Identification Tags
 Collection Date; Submission Date
 Country; Name
 Mutations

EPI_ISL_402123 GWHABKF00000001 MT019529
 2019-12-24 2020-01-11
 China BetaCoV/Wuhan/IPBCAMS-WH-01/2019
 A3778G A8388G T8987A AAAA29900-

EPI_ISL_402123 GWHABKF00000001 MT019529
 2019-12-24 2020-01-11
 China BetaCoV/Wuhan/IPBCAMS-WH-01/2019
 A3778G A8388G T8987A AAAA29900-

EPI_ISL_406798 CNA0007332 LR757998 NMDC60013002-01
 2019-12-26 2020-01-30
 China WH01
 ATTAAAGGTTTATACCTTCCCAGGT1- C6968A T11764A AAAAAAAAAAAA29892-

EPI_ISL_406798 CNA0007332 LR757998 NMDC60013002-01
 2019-12-26 2020-01-30
 China WH01
 ATTAAAGGTTTATACCTTCCCAGGT1- C6968A T11764A AAAAAAAAAAAA29892-

EPI_ISL_406798 CNA0007332 LR757998 NMDC60013002-01
 2019-12-26 2020-01-30
 China WH01
 ATTAAAGGTTTATACCTTCCCAGGT1- C6968A T11764A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_402119 NMDC60013084-01
 2019-12-30 2020-01-10
 China BetaCoV/Wuhan/IVDC-HB-01/2019
 AAAAAAAAAAAA29892-

EPI_ISL_402121 NMDC60013086-01
 2019-12-30 2020-01-10
 China BetaCoV/Wuhan/IVDC-HB-05/2019
 G20670A G20679A AAAAAAAAAAAA29892-

EPI_ISL_402124 GWHABKL00000001 MN996528
 2019-12-30 2020-01-11
 China WIV04
 AAAAAAAAAAAA29892-

EPI_ISL_402124 GWHABKL00000001 MN996528
 2019-12-30 2020-01-11
 China WIV04
 AAAAAAAAAAAA29892-

EPI_ISL_402127 GWHABKK00000001 MN996527
 2019-12-30 2020-01-18
 China WIV02
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G21316A A24325G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_402127 GWHABKK00000001 MN996527
 2019-12-30 2020-01-18
 China WIV02
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G21316A A24325G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_402128 GWHABKM00000001 MN996529
 2019-12-30 2020-01-18
 China WIV05
 ATTAAAGGTTTA1- G7016A A21137G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_402128 GWHABKM00000001 MN996529
 2019-12-30 2020-01-18
 China WIV05
 ATTAAAGGTTTA1- G7016A A21137G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_402129 GWHABKN00000001 MN996530
 2019-12-30 2020-01-18
 China WIV06
 ATTAAAGGTTTATA1- ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_402129 GWHABKN00000001 MN996530
 2019-12-30 2020-01-18
 China WIV06
 ATTAAAGGTTTATA1- ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_402130 GWHABKO00000001 MN996531
 2019-12-30 2020-01-18
 China WIV07
 ATTAAAGGTTTAT1- A8001C C9534T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_402130 GWHABKO00000001 MN996531
 2019-12-30 2020-01-18
 China WIV07
 ATTAAAGGTTTAT1- A8001C C9534T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_402132 NMDC60013088-01
 2019-12-30 2020-01-19
 China BetaCoV/Wuhan/HBCDC-HB-01/2019
 ATTAAAGGTTT1- T21656A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_403929 GWHABKI00000001 MT019532
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-04/2019
 AAAAAAAAAAAAA29891-

EPI_ISL_403929 GWHABKI00000001 MT019532
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-04/2019
 AAAAAAAAAAAAA29891-

EPI_ISL_403930 GWHABKH00000001 MT019531
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-03/2019
 T6996C AAAA29900-

EPI_ISL_403930 GWHABKH00000001 MT019531
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-03/2019
 T6996C AAAA29900-

EPI_ISL_403931 GWHABKG00000001 MT019530
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-02/2019
 T104A TT111CG CT119GC G124A AAAAAAAAAAAAAA29890-

EPI_ISL_403931 GWHABKG00000001 MT019530
 2019-12-30 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-02/2019
 T104A TT111CG CT119GC G124A AAAAAAAAAAAAAA29890-

EPI_ISL_412898 NMDC60013090-01
 2019-12-30 2020-02-28
 China BetaCoV/Wuhan/HBCDC-HB-02/2019
 ATTAAAGGTTT1- A24325G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_412899 NMDC60013091-01
 2019-12-30 2020-02-28
 China BetaCoV/Wuhan/HBCDC-HB-03/2019
 ATTAAAGGTTT1- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_412900 NMDC60013092-01
 2019-12-30 2020-02-28
 China BetaCoV/Wuhan/HBCDC-HB-04/2019
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGGAGACTCCGTGGAGGAGGTCTTATCAGAGGCACGTCAACATCTTAAAGATGGCACTTGTGGCTTAGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTTGAACAGCCCTATGTGTTCATCAAACGTTCGGATGCTCGAACTGCACCTCATGGTCATGTTATGGTTGAGCTGGTAGCAGAACTCGAAGGCATTCAGTACGGTCGT1- G765C A2215C T4608A C4628G G4631C TTAAATTTGGAAGAAGCTGCTCGGTATATGAGATCTCTCAAAGTGCCAGCTACAGTTTCTGTTTCTTCACCTGATGCTGTTACAGCGTATAATGGTTA4634C T4732C AC4736TT T4747C C4763G T6006C T6820C A6837C T6976A T6978A T6980C G6986C T6988A C7006A T9316A GT9324AA G9648C G9653C A9826C T9831C T9861G T21656G A24325G G28597C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_434534
 2019-12-30 2020-04-28
 China hCoV-19/Wuhan/IVDC-HB-GX02/2019
 A24325G AAAAAAAAAAA29893-

MT291826 GWHABKZ01000001
 2019-12-30 2020-02-25
 China SARS-CoV-2/Wuhan_IME-WH01/human/2019/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- T4946C C8782T T28144C AAAAAAAA29896-

MT291827 GWHACAT01000001
 2019-12-30 2020-03-02
 China SARS-CoV-2/Wuhan_IME-WH02/human/2019/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- AAAAAAAA29896-

MT291828 GWHACAU01000001
 2019-12-30 2020-03-02
 China SARS-CoV-2/Wuhan_IME-WH03/human/2019/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A24325G AAAAAAAA29896-

MT291829 GWHACAV01000001
 2019-12-30 2020-03-02
 China SARS-CoV-2/Wuhan_IME-WH04/human/2019/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT291830 GWHACAW01000001
 2019-12-30 2020-03-02
 China SARS-CoV-2/Wuhan_IME-WH05/human/2019/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- AAAAAAAA29896-

NMDC60013002-06
 2019-12-30 2020-01-28
 China BetaCoV/Wuhan/WH19008/2019 
 A24325G AAAAAAAAAAAA29892-

NMDC60013002-08
 2019-12-30 2020-01-28
 China BetaCoV/Wuhan/WH19001/2019
 AAAAAAAAAAAA29892-

NMDC60013002-10
 2019-12-30 2020-01-28
 China BetaCoV/Wuhan/WH19005/2019
 G20670A G20679A AAAAAAAAAAAA29892-

EPI_ISL_402120 NMDC60013085-01
 2020-01-01 2020-01-11
 China BetaCoV/Wuhan/IVDC-HB-04/2020
 C27493T C28253T AAAAAAA29897-

EPI_ISL_403928 GWHABKJ00000001 MT019533
 2020-01-01 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-05/2020
 G7866T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_403928 GWHABKJ00000001 MT019533
 2020-01-01 2020-01-21
 China BetaCoV/Wuhan/IPBCAMS-WH-05/2020
 G7866T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_406800 CNA0007334 LR757996 NMDC60013002-03
 2020-01-01 2020-01-30
 China WH03
 ATTAAAGGTTTATACCTTCC1- AAAAAAAAAAAAAAA29889-

EPI_ISL_406800 CNA0007334 LR757996 NMDC60013002-03
 2020-01-01 2020-01-30
 China WH03
 ATTAAAGGTTTATACCTTCC1- AAAAAAAAAAAAAAA29889-

EPI_ISL_406800 CNA0007334 LR757996 NMDC60013002-03
 2020-01-01 2020-01-30
 China WH03
 ATTAAAGGTTTATACCTTCC1- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_408514 NMDC60013073-01
 2020-01-01 2020-02-09
 China Wuhan/IVDC-HB-envF13-20/2020
 C15T C48A AAAAAAAAAAAA29892-

EPI_ISL_408515 NMDC60013074-01
 2020-01-01 2020-02-09
 China Wuhan/IVDC-HB-envF13-21/2020
 C48A A12350C A29019T AAAAAAAAAAAA29892-

NMDC60013002-09
 2020-01-01 2020-01-28
 China BetaCoV/Wuhan/WH19004/2020
 C27493T C28253T AAAAAAA29897-

EPI_ISL_406716 MN988668
 2020-01-02 2020-01-23
 China 2019-nCoV WHU01
 A1- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_406717 MN988669
 2020-01-02 2020-01-23
 China 2019-nCoV WHU02
 A1- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514752 MT034054
 2020-01-03 2020-02-09
 China SARS-CoV-2/human/CHN/Beijing-01/2020
 ATTAAAGGTTT1- T13270C -A29859TCCG GAA29864TCC CAA29870TTT A29876C A29878GCCTCTTCCTC A29880T AAAAAAAAAAAAAAAAAAAAAA29882CT

EPI_ISL_529972
 2020-01-04 2020-09-10
 Spain hCoV-19/Spain/MD-H12-37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_406801 CNA0007335 LR757995 NMDC60013002-04
 2020-01-05 2020-01-30
 China WH04
 ATTAAAGGTTTATAC1- C16T C8782T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_406801 CNA0007335 LR757995 NMDC60013002-04
 2020-01-05 2020-01-30
 China WH04
 ATTAAAGGTTTATAC1- C16T C8782T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_406801 CNA0007335 LR757995 NMDC60013002-04
 2020-01-05 2020-01-30
 China WH04
 ATTAAAGGTTTATAC1- C16T C8782T T28144C C29854T T29856A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_434692
 2020-01-05 2020-05-01
 Thailand hCoV-19/Thailand/NIH-15/2020
 ATTAAAGGTTT1- TATACATGTCTCTGGGACCAATGG21763- CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529973
 2020-01-05 2020-09-10
 Spain hCoV-19/Spain/MD-H12-38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C25480T C27005T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_529974
 2020-01-06 2020-09-10
 Spain hCoV-19/Spain/MD-H12-39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAC1966- C3037T C4002T A6248C C6813T C14408T A20268G A23403G G26834T G28230T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_529975
 2020-01-07 2020-09-10
 Spain hCoV-19/Spain/MD-H12-40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2890C C3037T C14408T A20268G A23403G G29734C G29759T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

NMDC60013002-07
 2020-01-07 2020-01-28
 China BetaCoV/Wuhan/YS8011/2020 
 A29869- AAAAAAAAAAAA29892-

EPI_ISL_403962
 2020-01-08 2020-01-17
 Thailand hCoV-19/Thailand/61/2020
 ATTAAAGGTTT1- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_411957 MT093631
 2020-01-08 2020-02-21
 China SARS-CoV-2/human/CHN/WH-09/2020
 ATTAAAGGTTTAT1- C186T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_412459 NMDC60013089-01
 2020-01-08 2020-02-26
 China BetaCoV/Jingzhou/HBCDC-HB-01/2020
 ATTAAAGGTTT1- C18828T C26370T C27944T C28093T G28183A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_437623 MT447155
 2020-01-08 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200040-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_529976
 2020-01-08 2020-09-10
 Spain hCoV-19/Spain/MD-H12-41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_529977
 2020-01-09 2020-09-10
 Spain hCoV-19/Spain/MD-H12-42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10747T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_406030 MN938384
 2020-01-10 2020-01-14
 China 2019-nCoV_HKU-SZ-002a_2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C8782T T28144C C29095T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_450500 GWHACDE01000001 MT259226
 2020-01-10 2020-03-26
 China SARS-CoV-2/Wuhan_OS52/human/2020/CHN
 ATTAAAGGTTTATA1- T565C C17825T T27384C G29573A G29861A G29868C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_529978
 2020-01-10 2020-09-10
 Spain hCoV-19/Spain/MD-H12-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T C14408T A20268G A23403G C29218T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_405839 MN975262
 2020-01-11 2020-01-21
 China 2019-nCoV_HKU-SZ-005b_2020
 C8782T C9561T T15607C T28144C C29095T AAAAAAAAAAAA29892-

EPI_ISL_408486 NMDC60013081-01
 2020-01-11 2020-02-09
 China Jiangxi/IVDC-JX-002/2020
 G8274A AAAAAAAAAAAA29892-

EPI_ISL_421252
 2020-01-11 2020-04-07
 China hCoV-19/Pingxiang/JX5/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G8274A AAAAAAAAAAAA29892-

EPI_ISL_403963
 2020-01-13 2020-01-17
 Thailand hCoV-19/Thailand/74/2020
 ATTAAAGGTTT1- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_406592
 2020-01-13 2020-01-29
 China hCoV-19/Shenzhen/SZTH-001/2020
 C1648T T2169C A3801C A4644G G4656C GT4728TA T4739C T5464C A6308G C6786G T6834G A6838G T8091A T8455C T12597A T15636A C19269T T20315A G24947C A25347G A26108T A26141T G26755C A26759T T28144C C29095T AAAAAAAAAAAA29892-

EPI_ISL_406593
 2020-01-13 2020-01-29
 China hCoV-19/Shenzhen/SZTH-002/2020
 C8782T T28144C C29095T AAAAAAAAAAAA29892-

EPI_ISL_410301 MT072688
 2020-01-13 2020-02-14
 Nepal SARS-CoV-2/human/NPL/61-TW/2020
 ATTAAAGGTTTATAC1- C24034T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_447909
 2020-01-13 2020-05-19
 Thailand hCoV-19/Thailand/Nonthaburi_59/2020
 AAAAAAAAAAAA29892-

EPI_ISL_529979
 2020-01-13 2020-09-10
 Spain hCoV-19/Spain/MD-H12-46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- GGTCTT1598- C7967T C8782T C16694T C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_403932 NMDC60013005-01
 2020-01-14 2020-01-22
 China BetaCoV/Guangdong/20SF012/2020
 ATTAAAGGTTT1- C8782T T28144C C29095T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529980
 2020-01-14 2020-09-10
 Spain hCoV-19/Spain/MD-H12-47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C27476T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_403933 NMDC60013006-01
 2020-01-15 2020-01-22
 China BetaCoV/Guangdong/20SF013/2020
 ATTAAAGGTTT1- C8782T T28144C C29095T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_403934 NMDC60013007-01
 2020-01-15 2020-01-22
 China BetaCoV/Guangdong/20SF014/2020
 ATTAAAGGTTT1- T23569C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_403935 NMDC60013008-01
 2020-01-15 2020-01-22
 China BetaCoV/Guangdong/20SF025/2020
 ATTAAAGGTTT1- C8782T T28144C C29095T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_408484 NMDC60013079-01
 2020-01-15 2020-02-09
 China Sichuan/IVDC-SC-001/2020
 C8782T T19190A C24034T T26729C G28077C T28144C AAAAAAAAAAAA29892-

EPI_ISL_447910
 2020-01-15 2020-05-19
 Thailand hCoV-19/Thailand/Nonthaburi_68/2020
 AAAAAAAAAAAA29892-

EPI_ISL_529981
 2020-01-15 2020-09-10
 Spain hCoV-19/Spain/MD-H12-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G C26447T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_404227 NMDC60013099-01
 2020-01-16 2020-01-21
 China BetaCoV/Zhejiang/WZ-01/2020
 ATTAAAGGTTTATACCTTC1- A31G C583T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_406594
 2020-01-16 2020-01-29
 China hCoV-19/Shenzhen/SZTH-003/2020
 A1CCAGAAGAA C27577T C28854T AAAAAAAAAAAA29892-

EPI_ISL_406595
 2020-01-16 2020-01-29
 China hCoV-19/Shenzhen/SZTH-004/2020
 A1CCAGAAGAA G709A T6846C A11707G A19959C A22622G G22652T T23569C T25645C C28716T AAAAAAAAAAAA29892-

EPI_ISL_434693
 2020-01-16 2020-05-01
 Thailand hCoV-19/Thailand/NIH-59/2020
 ATTAAAG1- C13035Y T26258K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_529982
 2020-01-16 2020-09-10
 Spain hCoV-19/Spain/MD-H12-49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_403936 NMDC60013010-01
 2020-01-17 2020-01-22
 China BetaCoV/Guangdong/20SF028/2020
 ATTAAAGGTTT1- C21707T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_404228 NMDC60013100-01
 2020-01-17 2020-01-21
 China BetaCoV/Zhejiang/WZ-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_408480 NMDC60013075-01
 2020-01-17 2020-02-09
 China Yunnan/IVDC-YN-003/2020
 C8782T G11083T T28144C AAAAAAAAAAAA29892-

EPI_ISL_412978 NMDC60013093-01
 2020-01-17 2020-03-02
 China BetaCoV/Wuhan/HBCDC-HB-02/2020
 ATTAAAGGTTTAT1- C8782T C12141A C23816T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_529983
 2020-01-17 2020-09-10
 Spain hCoV-19/Spain/MD-H12-50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539333
 2020-01-17 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P2/2020
 T25525A

MT049951
 2020-01-17 2020-02-09
 China SARS-CoV-2/human/CHN/Yunnan-01/2020
 C75A C8782T G11083C T21644A T28144C

MW011762
 2020-01-17 2020-09-16
 China SARS-CoV-2/human/CHN/P2-SARS-CoV-2/2020
 T25525A

EPI_ISL_403937
 2020-01-18 2020-01-22
 China hCoV-19/Guangdong/20SF040/2020
 ATTAAAGGTTT1- C21707T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_408481 NMDC60013076-01
 2020-01-18 2020-02-09
 China Chongqing/IVDC-CQ-001/2020
 G11083T AAAAAAAAAAAA29892-

EPI_ISL_408485 NMDC60013080-01
 2020-01-18 2020-02-09
 China BetaCoV/Beijing/IVDC-BJ-005/2020
 A4- C8782T C17002T C24034T GTTTT24140CAAAA T24471C T25652A T26729C G26834T G28077C T28144C AAAAAAAAAAAA29892-

EPI_ISL_412979 NMDC60013094-01
 2020-01-18 2020-03-02
 China BetaCoV/Wuhan/HBCDC-HB-03/2020
 ATTAAAGGTTT1- C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_412980 NMDC60013095-01
 2020-01-18 2020-03-02
 China BetaCoV/Wuhan/HBCDC-HB-04/2020
 ATTAAAGGTTTATA1- C8782T T18996C C24370T T28144C T29029C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_412981 NMDC60013096-01
 2020-01-18 2020-03-02
 China BetaCoV/Wuhan/HBCDC-HB-05/2020
 ATTAAAGGTTTATACC1- G1397A A6528R G11083T T11709A T28688C G29742T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_529984
 2020-01-18 2020-09-10
 Spain hCoV-19/Spain/MD-H12-52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6968T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_404895 MN985325
 2020-01-19 2020-01-24
 United States SARS-CoV-2/human/USA/USA-WA1/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_407313
 2020-01-19 2020-02-05
 China hCoV-19/Hangzhou/HZCDC0001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_408482 NMDC60013077-01
 2020-01-19 2020-02-09
 China BetaCoV/Shandong/IVDC-SD-001/2020
 G1397A C7299T C10789T G11083T C27612G T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_408488 NMDC60013082-01
 2020-01-19 2020-02-09
 China Jiangsu/IVDC-JS-001/2020
 T54- T58A AAAAAAAAAAAA29892-

EPI_ISL_529985
 2020-01-19 2020-09-10
 Spain hCoV-19/Spain/MD-H12-53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT233526
 2020-01-19 2020-03-23
 United States SARS-CoV-2/human/USA/USA-WA1/2020
 ATTAAAGGTTTATACCTT1- C8782T C18060T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

MT246667
 2020-01-19 2020-03-25
 United States SARS-CoV-2/human/USA/USA-WA1/2020
 ATTA1- C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

MT952134
 2020-01-19 2020-09-02
 United States SARS-CoV-2/human/USA/WA-CDC-WA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C8782T C18060T T28144C TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_406970 GWHABKS00000001 MT039873
 2020-01-20 2020-02-03
 China SARS-CoV-2/human/Hangzhou/HZ-1/2020
 ATT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421235
 2020-01-20 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T A21282G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421236
 2020-01-20 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T A21282G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428449 NMDC60013112-01
 2020-01-20 2020-04-21
 China hCoV-19/Guangdong/20SF123/2020
 C8782T C18060T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_479799
 2020-01-20 2020-07-01
 Japan hCoV-19/Japan/PG-0015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479800
 2020-01-20 2020-07-01
 Japan hCoV-19/Japan/PG-0016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A A29433G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_529986
 2020-01-20 2020-09-10
 Spain hCoV-19/Spain/MD-H12-54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T C14408T A20268G A23403G C25427T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT226610
 2020-01-20 2020-03-20
 China SARS-CoV-2/human/CHN/KMS1/2020
 G4288T A4307C A7479G C8782T G11083T G11207C T11233G G12041C G12160C G12202C G12208T G12355C G12378A G12464T G12467T G12491T G12514C G12572T G12578T G12582T G12600A G12660C G12685C G12773T G12793T G20980C T21784A T28144C AAAA29900-

EPI_ISL_404253 MN988713
 2020-01-21 2020-01-25
 United States 2019-nCoV/USA-IL1/2020
 T490W C3177Y C8782Y C24034Y T26729Y G28077S T28144Y C28854Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_408478
 2020-01-21 2020-02-09
 China hCoV-19/Chongqing/YC01/2020
 C1342T C8782T C18060T T28144C C29200T AAAAAAAAAAAA29892-

EPI_ISL_411060
 2020-01-21 2020-02-19
 China hCoV-19/Fujian/8/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416389
 2020-01-21 2020-03-20
 China hCoV-19/Shanghai/SH0093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G27754T G28851T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_417064
 2020-01-21 2020-03-24
 China hCoV-19/Hong Kong/VB20017970-2/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T28861C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_418441 MT253701
 2020-01-21 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418442 MT253702
 2020-01-21 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418504 MT253708
 2020-01-21 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418506 MT253709
 2020-01-21 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418507 MT253710
 2020-01-21 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_421227
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0091L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421229
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0090L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421231
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0049L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421232
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0048L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421233
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421234
 2020-01-21 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6187T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421243
 2020-01-21 2020-04-07
 China hCoV-19/Nanchang/JX14/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T A8924G A8926T T28144C AAAAAAAAAAAA29892-

EPI_ISL_428443 NMDC60013106-01
 2020-01-21 2020-04-21
 China hCoV-19/Guangdong/20SF115/2020
 C8782T C24034T C24099T T26729C G28077C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428447 NMDC60013110-01
 2020-01-21 2020-04-21
 China hCoV-19/Guangdong/20SF117/2020
 C8782T C15480T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_529987
 2020-01-21 2020-09-10
 Spain hCoV-19/Spain/MD-H12-55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C27476T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_406036 MN994468
 2020-01-22 2020-01-27
 United States 2019-nCoV/USA-CA2/2020
 C17000T G26144T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_406223 MN997409
 2020-01-22 2020-01-28
 United States 2019-nCoV/USA-AZ1/2020
 C8782T G11083T T28144C C29095T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_406531 NMDC60013011-01
 2020-01-22 2020-01-29
 China BetaCoV/Guangdong/20SF174/2020
 ATTAAAGGTTTATACCTTCCCAG1- C21707T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_406533 NMDC60013012-01
 2020-01-22 2020-01-29
 China BetaCoV/Guangzhou/20SF206/2020
 ATTAAAGGTTTATACCTTCCCAG1- C15324T C29303T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_406534 NMDC60013013-01
 2020-01-22 2020-01-29
 China BetaCoV/Foshan/20SF207/2020
 ATTAAAGGTTTATACCTTCCCAG1- C28291T C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_406535 NMDC60013014-01
 2020-01-22 2020-01-29
 China BetaCoV/Foshan/20SF210/2020
 ATTAAAGGTTTATACCTTCCCAG1- C17373T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_406536 NMDC60013015-01
 2020-01-22 2020-01-29
 China BetaCoV/Foshan/20SF211/2020
 ATTAAAGGTTTATACCTTCCCAG1- C17373T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_408976
 2020-01-22 2020-02-11
 Australia hCoV-19/Australia/NSW02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8327T G29449T AGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCT29735- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_411066
 2020-01-22 2020-02-19
 China hCoV-19/Fujian/13/2020
 C17373T G29755A AAAAAAAAAAAA29892-

EPI_ISL_412028 MT644268
 2020-01-22 2020-02-24
 China SARS-CoV-2/human/HKG/VM20001061/2020
 ATTAAAGGTTTAT1- C1663T C8782T G22661T C24034Y T26729C G28077C T28144C G29862T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_415711
 2020-01-22 2020-03-19
 China hCoV-19/Hangzhou/ZJU-05/2020
 -T2AGAGTGCTTAG GG7AT -10TTAATCAGCACGAAGTTCTACTTGCACCA

EPI_ISL_417443
 2020-01-22 2020-03-26
 China hCoV-19/Hong Kong/XM-PII-S4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C1663T C4455T C8782T C21636T G22661T CTAATTCTCCTCGGCGGGCACGTAGTGTAG23595- C24034T G28077C T28144C C29095T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418267 MT192773
 2020-01-22 2020-03-14
 Vietnam SARS-CoV-2/human/VNM/nCoV-19-02S/2020
 A26- C28T C10232T AAAAAAAAAAAA29892-

EPI_ISL_418269 MT192772
 2020-01-22 2020-03-14
 Vietnam SARS-CoV-2/human/VNM/nCoV-19-01S/2020
 C10232T AAAAAAAAAAAA29892-

EPI_ISL_418502 MT253705
 2020-01-22 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418503 MT253706
 2020-01-22 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C16247Y CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_421225
 2020-01-22 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421226
 2020-01-22 2020-04-07
 China hCoV-19/Hangzhou/HZCDC0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421237
 2020-01-22 2020-04-07
 China hCoV-19/Jiujiang/JX22/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_421244
 2020-01-22 2020-04-07
 China hCoV-19/Shangrao/JX29/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_434571 MT230904
 2020-01-22 2020-03-22
 China SARS-CoV-2/human/HKG/HKU-001a/2020
 C1663T C8782T G22661T C24034T T26729C G28077C T28144C AAAAAAAAAAAA29892-

EPI_ISL_434694
 2020-01-22 2020-05-01
 Thailand hCoV-19/Thailand/NIH-162/2020
 ATTAAAGGTTT1- C18885T G19846R CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_449476 MT079843
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV001/2020
 -2ACTGAG A1G AA4GG G7C T10G A12G ACCT14TTTC -20GTTGAAA C2536T C8782T T8886C T28144C

EPI_ISL_449477 MT079844
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV002/2020
 ATT1TCG -7GTTGGTT A12G AC14TA T17C CCC19GGG G23A TA25GT C28T C2536T C8782T T8886C T28144C

EPI_ISL_449478 MT079845
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV003/2020
 A1CCTACAAGAGA TA3CG -7AGTTGGTT C8782T T18996C C24370T T28144C T29029C -CC29835GTGAGATTAAAAGTTAATA G29841C GA29843AC T29847G AA29849GC GC29853TG TC29856AG G29861C G29868TCATTCTGC A29873G AA29875GT A29878G AA29880CT A29883T A29885T -29887TCGT AAA29890CGG AAA29897GCG -29904CGTTTA

EPI_ISL_449479 MT079846
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV004/2020
 ATT1-CG -7GTTGGTT A12G AC14TA T17C CCC19GGG G23A TA25GT C28T C2536T C8782T T8886C T28144C -CC29835GTGAGATTAAAGTTAATA G29841C GA29843AC T29847G AA29849GC GC29853TG TC29856AG G29861C G29868TCATTCTGC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873G

EPI_ISL_449480 MT079847
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV005/2020
 A1G AAA4- C8782T C10626T T28144C CCCC29835- A29839G T29842A -29847AAAG TAG29851CTA T29855A -29859ACTTGTGC G29861T AGAA29863TAGT GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_449481 MT079848
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV006/2020
 ATTAAAGGTT1- A12G ACC14GTT -20TCGTTGAAA C8782T T28144C -CC29835GTGAGATTAAAGTTAATA G29841C GA29843AC T29847G AA29849GC GC29853TG TC29856AG G29861C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_449482 MT079849
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV007/2020
 A1G AAA4GGTT A12G AC14TA T17C CCC19GGG G23A TA25GT C28T C8782T G16325C T28144C

EPI_ISL_449483 MT079850
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV008/2020
 A1GGA TAA3CGG -7AAGTTGGTT C2536T C8782T T8886C T28144C TAG29826GGT CCCC29835- A29839G T29842A -29847AAAG TAG29851CTA T29855A -29859ACTTGTGC G29861T AGAA29863TAGT GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_449484 MT079851
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV011/2020
 C8782T T28144C -29904CCGAAAGCTTGTGTTACATTGTATGCTTTAGTGGCAGTACGTTTTTTGCCGAGGCTTCTTAGAAGCCTCAGCAGCAGATTTCTTAGTGACAGTTTGGCCTTGTTGTTGTTGGCCT

EPI_ISL_449485 MT079852
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV012/2020
 -2AACCTGTAAAACAGGCAAACTGAG A1G AA4GG G7C T10G A12G ACCT14TTTC -20GTTGAAA T25G AC27CA AA30GG CAA33TCT -A38ATCTTC C8782T T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_449486 MT079853
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCAT1- C2536T C8782T T8886C T28144C A29876G A29879G A29882GGCTGATGAAACTCAAGCCTTACCGC A29884G A29886G A29888C A29890G A29893G A29897C AA29899GC -29904CTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATG

EPI_ISL_449487 MT079854
 2020-01-22 2020-02-18
 China SARS-CoV-2/human/CHN/WHUHnCoV021/2020
 A1G AA4GG G7C T10G A12G ACCT14TTTC -20GTTGAAA TA25-G A31GGCTCTCC C17249T C17894T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450444 MT039874
 2020-01-22 2020-02-09
 China SARS-CoV-2/human/CHN/IME-HZ01/2020
 ATTAAAGGTTTA1- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_451323
 2020-01-22 2020-05-24
 China hCoV-19/China/SC-MY-057/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C683T T13243C

EPI_ISL_455683 MT407649
 2020-01-22 2020-04-27
 China SARS-CoV-2/human/CHN/CN1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C8782T C15480T T28144C AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_455684 MT407650
 2020-01-22 2020-04-27
 China SARS-CoV-2/human/CHN/CN2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C8782T C13170T C15480T T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_455685 MT407651
 2020-01-22 2020-04-27
 China SARS-CoV-2/human/CHN/CN5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- G6337T C8782T C15480T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_529988
 2020-01-22 2020-09-10
 Spain hCoV-19/Spain/MD-H12-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5622T A9134C C9474T C14408T A20268G A23403G C26534T C29218T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT547814
 2020-01-22 2020-06-01
 United States SARS-CoV-2/human/HKG/VM20001061/2020
 ATTAAAGGTTTATA1- C1663T C8782T C12919T C21636T G22661T G23607A C24034T C24566G T26729C TTTTAAAGTTTCCATTTGGAATCTTGA27264- G28077C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_406031
 2020-01-23 2020-01-27
 Taiwan hCoV-19/Taiwan/2/2020
 ATT1- G16188T A25964G G26144T A29877T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_406034 MN994467
 2020-01-23 2020-01-27
 United States 2019-nCoV/USA-CA1/2020
 G1548A C8782T C24034T T26729C G28077C T28144C A28792T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_406538 NMDC60013016-01
 2020-01-23 2020-01-29
 China BetaCoV/Guangdong/20SF201/2020
 ATTAAAGGTTTATACCTTCCCAG1- AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_406596
 2020-01-23 2020-01-29
 France hCoV-19/France/IDF0372/2020
 ATTAAAGGTTT1- G22661T G26144T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_406597
 2020-01-23 2020-01-29
 France hCoV-19/France/IDF0373/2020
 ATTAAAGGTTTATACCTTC1- G22661T G26144T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_406973
 2020-01-23 2020-02-03
 Singapore hCoV-19/Singapore/1/2020
 A25060G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_408479
 2020-01-23 2020-02-09
 China hCoV-19/Chongqing/ZX01/2020
 AAAAAAAAAAAA29892-

EPI_ISL_410532
 2020-01-23 2020-02-17
 Japan hCoV-19/Japan/OS-20-07-1/2020
 ATT1- AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_410720
 2020-01-23 2020-02-18
 France hCoV-19/France/IDF0372-isl/2020
 G22661T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_411950
 2020-01-23 2020-02-22
 China hCoV-19/Jiangsu/JS01/2020
 C3768T C25919T C29732T AAAAAAAAAAAA29892-

EPI_ISL_413015
 2020-01-23 2020-03-02
 Canada hCoV-19/Canada/ON_VIDO-01/2020
 ATTAAAGGTTTA1- AAGTCATTT686- A5084G C26261T C28854T AA29902-

EPI_ISL_418508 MT253696
 2020-01-23 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418509 MT253697
 2020-01-23 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418510 MT253698
 2020-01-23 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_421248
 2020-01-23 2020-04-07
 China hCoV-19/Nanchang/JX39/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C289T T2922C C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_425177
 2020-01-23 2020-04-14
 Canada hCoV-19/Canada/ON_ON-VIDO-01-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A5084G C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_431785
 2020-01-23 2020-04-29
 China hCoV-19/Fujian/3520022Y/2020
 ATTAAA1- A26- C1077T C8782T T28144C G28878A G29742A -29851T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_434563 MT114412
 2020-01-23 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-902a/2020
 AT1- T28861C AAAAAAAAAAAA29892-

EPI_ISL_437612 MT447166
 2020-01-23 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI203285-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_437622 MT447156
 2020-01-23 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200383-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G26144T T27285C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_450196
 2020-01-23 2020-05-20
 Thailand hCoV-19/Thailand/Bangkok_168/2020
 C2915A A14280G G15327T G17686T G25217T AAAAAAAAAAAA29892-

EPI_ISL_451390
 2020-01-23 2020-05-24
 China hCoV-19/China/SC-WCH4-288/2020
 A16824G C26753T T28144C

EPI_ISL_468726 MT622319
 2020-01-23 2020-06-16
 China SARS-CoV-2/human/CHN/Shanghai_CH-03/2020
 AT1- C8782T C18029T C18060T C25487T T28144C A29884G A29888G AAAAAAAAAAAA29892-

EPI_ISL_529989
 2020-01-23 2020-09-10
 Spain hCoV-19/Spain/MD-H12-57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16744A A20268G G21190A A23403G T26301G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_407893
 2020-01-24 2020-02-06
 Australia hCoV-19/Australia/NSW01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_408668 EPI_ISL_416427
 2020-01-24 2020-02-10
 Vietnam hCoV-19/Vietnam/VR03-38142/2020
 A26- C28T C8782T C24034T T26729C G28077C T28144C T29859C GAGAATGA29862- A29875G A29877C AAAAA29899-

EPI_ISL_411926
 2020-01-24 2020-02-21
 Taiwan hCoV-19/Taiwan/3/2020
 C8782T T28144C A29889G AAAAAAAAAAAA29892-

EPI_ISL_411952
 2020-01-24 2020-02-22
 China hCoV-19/Jiangsu/JS02/2020
 G3860A C7420T G13571T C21707T G26211T AAAAAAAAAAAA29892-

EPI_ISL_411953
 2020-01-24 2020-02-22
 China hCoV-19/Jiangsu/JS03/2020
 AAAAAAAAAAAA29892-

EPI_ISL_413485
 2020-01-24 2020-03-05
 China hCoV-19/Anhui/SZ005/2020
 ATT1- A4T C2189T T3086C A5094G C8782T G11083- C16049T G17122A T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_414938
 2020-01-24 2020-03-16
 China hCoV-19/Shandong/LY005-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T3171C C8782T T28144C TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAG29817- GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416046
 2020-01-24 2020-03-20
 China hCoV-19/Hangzhou/ZJU-04/2020
 A1CCCCCCCTTTTCAAGCAGAAGACGGCATACGAGA TA3GG -G7TCTCGTGACTGGAGTTCAGACGTGTGCTCTTCCA T10C

EPI_ISL_416829
 2020-01-24 2020-03-23
 Malaysia hCoV-19/Malaysia/MKAK-CL-2020-5045/2020
 ATTAAAGGTTTA1- C398T C27131T G27147C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416866
 2020-01-24 2020-03-23
 Malaysia hCoV-19/Malaysia/MKAK-CL-2020-5047/2020
 ATTAAAGGTT1- G27147C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416884
 2020-01-24 2020-03-23
 Malaysia hCoV-19/Malaysia/MKAK-CL-2020-5049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- -194ACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA CTATACATGTCTCTGGGACCAATGGTA21762- G27147C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_417030
 2020-01-24 2020-03-24
 Australia hCoV-19/Australia/NSW04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2445T C8782T T20367C T28144C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418511 MT253699
 2020-01-24 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_422425 NMDC60013101-01
 2020-01-24 2020-04-10
 China hCoV-19/Zhejiang/HZ103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C23575T TG29867- AAAAAAAAAAAAAAAAAAAAA29883G

EPI_ISL_424355 GWHACAX01000001 MT291831
 2020-01-24 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ01/2020
 ATTAA1- C8782T G11937A C16293T T28144C C29095T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_424355 GWHACAX01000001 MT291831
 2020-01-24 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ01/2020
 ATTAA1- C8782T G11937A C16293T T28144C C29095T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_428465 NMDC60013128-01
 2020-01-24 2020-04-21
 China hCoV-19/Guangdong/20SF616/2020
 G8179T G25630C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_430734
 2020-01-24 2020-04-27
 China hCoV-19/Beijing/BJ53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10604T A15647G A21137G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430735
 2020-01-24 2020-04-27
 China hCoV-19/Beijing/BJ54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10604T A15647G A21137G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434564 MT114413
 2020-01-24 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-902b/2020
 T28861C AAAAAAAAAAAA29892-

EPI_ISL_434565 MT114414
 2020-01-24 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-903a/2020
 G1397A G11083T T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_447911
 2020-01-24 2020-05-19
 Thailand hCoV-19/Thailand/Nonthaburi_193/2020
 C2942T G4390T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_450408 MT365028
 2020-01-24 2020-04-17
 China SARS-CoV-2/human/HKG/HKU-905a/2020
 G1397A G11083T T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_451345
 2020-01-24 2020-05-24
 China hCoV-19/China/SC-PHCC1-022/2020
 C241T C3037T A23403G

EPI_ISL_451360
 2020-01-24 2020-05-24
 China hCoV-19/China/SC-PHCC2-040/2020
 C8782T C21767T T28144C C29095T

EPI_ISL_451361
 2020-01-24 2020-05-24
 China hCoV-19/China/SC-PHCC2-041/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500-

EPI_ISL_451392
 2020-01-24 2020-05-24
 China hCoV-19/China/SC-WCH4-290/2020
 

EPI_ISL_495459
 2020-01-24 2020-07-23
 China hCoV-19/Lishui/LS003/2020
 ATTAAAGGTTT1- C3885A C12778T T13270C G29449T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_529990
 2020-01-24 2020-09-10
 Spain hCoV-19/Spain/MD-H12-58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A12130T C14408T A20268G A23403G C29546A ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_406844 MT007544
 2020-01-25 2020-01-31
 Australia SARS-CoV-2/human/AUS/VIC01/2020
 T19065C T22303G G26144T CGATCGAGTG29750-

EPI_ISL_407084 LC521925
 2020-01-25 2020-02-04
 Japan BetaCoV/Japan/AI/I-004/2020
 ATT1- GGAGACTCCGTGGAGGAGGTCTTA359- C1912T C18512T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_407193
 2020-01-25 2020-02-04
 South Korea hCoV-19/South Korea/KCDC03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- T4402C G5062T C8782T T28144C TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_407214 MT020880
 2020-01-25 2020-02-04
 United States 2019-nCoV/USA-WA1-A12/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_407215 MT020881
 2020-01-25 2020-02-04
 United States 2019-nCoV/USA-WA1-F6/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_407987
 2020-01-25 2020-02-07
 Singapore hCoV-19/Singapore/2/2020
 A1- G27147C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_408977
 2020-01-25 2020-02-11
 Australia hCoV-19/Australia/NSW03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_410531
 2020-01-25 2020-02-17
 Japan hCoV-19/Japan/NA-20-05-1/2020
 ATT1- AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_411915 MT192759
 2020-01-25 2020-03-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AAAAAAAAAAAAAA29890-

EPI_ISL_411915 MT192759
 2020-01-25 2020-03-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AAAAAAAAAAAAAA29890-

EPI_ISL_413014
 2020-01-25 2020-03-02
 Canada hCoV-19/Canada/ON_PHL2445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- A5084G C28854T AAA29901-

EPI_ISL_413691 CNA0013890
 2020-01-25 2020-03-09
 China Weifang/WFCDC0001/2020
 ATTAAAGGT1- C8782T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_414940
 2020-01-25 2020-03-16
 China hCoV-19/Shandong/LY007-2/2020
 ATTAAA1- T3171C C8782T T28144C TGTGATTTTAAT29840- G29853C T29855G TT29858CA GA29862TC A29865G T29867G A29869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_415709
 2020-01-25 2020-03-19
 China hCoV-19/Hangzhou/ZJU-01/2020
 AT1CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCAAGCAGAAGACGGCATACGAGATCGAG A6T -8TGACTGGA T11C T13G -16GTGTGCT C21G GG23TC AAC26- G11083T G23607A G26144T

EPI_ISL_416044
 2020-01-25 2020-03-20
 China hCoV-19/Hangzhou/ZJU-03/2020
 AT1CCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCAAGCAGAAGACGGCATACGAGATAATGAGCGGTGAC AA4GG G8T T10CAGACGTGTGCTCTTCCGA A12C G16846T

EPI_ISL_416316
 2020-01-25 2020-03-20
 China hCoV-19/Shanghai/SH0002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416317
 2020-01-25 2020-03-20
 China hCoV-19/Shanghai/SH0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C37T C8782T T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416411 MT450920
 2020-01-25 2020-03-20
 Australia SARS-CoV-2/human/AUS/VIC03/2020
 ATTA1- G26144T

EPI_ISL_417178
 2020-01-25 2020-03-24
 China hCoV-19/Hong Kong/HKPU6_2101/2020
 C745T C26198T

EPI_ISL_418327
 2020-01-25 2020-01-25
 Canada hCoV-19/Canada/ON_PHL4181/2020
 A1- A5084G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418512 MT253700
 2020-01-25 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418513 MT253703
 2020-01-25 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418514 MT253704
 2020-01-25 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_418515 MT253707
 2020-01-25 2020-03-27
 China SARS-CoV-2/human/CHN/HZ-638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_421242
 2020-01-25 2020-04-07
 China hCoV-19/Ganzhou/JX81/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_421245
 2020-01-25 2020-04-07
 China hCoV-19/Nanchang/JX90/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A8173T C8782T T16909A T20852A C21997A T25724C T28144C AAAAAAAAAAAA29892-

EPI_ISL_421249
 2020-01-25 2020-04-07
 China hCoV-19/Xinyu/JX122/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_424356 GWHACAY01000001 MT291832
 2020-01-25 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ02/2020
 ATTAAAGG1- T4402C G5062T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_424356 GWHACAY01000001 MT291832
 2020-01-25 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ02/2020
 ATTAAAGG1- T4402C G5062T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428464 NMDC60013127-01
 2020-01-25 2020-04-21
 China hCoV-19/Guangdong/20SF602/2020
 G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429852
 2020-01-25 2020-04-24
 China hCoV-19/Lishui/LS111/2020
 ATTAAAGGTTT1- C3885A C12778T T13270C G29449T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871TT

EPI_ISL_437620 MT447158
 2020-01-25 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200468-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C2942T G4390T C8782T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437621 MT447157
 2020-01-25 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200433-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_447912
 2020-01-25 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_237/2020
 C2942T G4390T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_447914
 2020-01-25 2020-05-19
 Thailand hCoV-19/Thailand/Phuket_247/2020
 AAAAAAAAAAAA29892-

EPI_ISL_450489 GWHACDJ01000001 MT259231
 2020-01-25 2020-03-26
 China SARS-CoV-2/Wuhan_YB012504/human/2020/CHN
 ATTAAAGGTTTATA1- C20692T G29868C AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_450504 GWHACDI01000001 MT259230
 2020-01-25 2020-03-26
 China SARS-CoV-2/Wuhan_YB012506/human/2020/CHN
 ATTAAAGGTTTATA1- C17373T G29868C AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_451382
 2020-01-25 2020-05-24
 China hCoV-19/China/SC-WCH-315/2020
 ATTAAAGGTTTATACCTTCCCAG1- C12896T C17373T C23191T

EPI_ISL_493149 GWHALPE01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A137/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C5869T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493150 GWHALPF01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A142/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C C5869T C18109A ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493151 GWHALPG01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A145/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C5869T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493152 GWHALPH01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A148/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C C5869T C24130A ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493153 GWHALPI01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A152/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C C5869T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493154 GWHALPJ01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A153/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493155 GWHALPK01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A160/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C C24130A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_493156 GWHALPL01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A163/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C C24130A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493157 GWHALPM01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A164/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493158 GWHALPN01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A167/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C28115T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493159 GWHALPO01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A168/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1079C T6556C A13625G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493161 GWHALPP01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A170/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C2462T G18380A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493163 GWHALPQ01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A174/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C19386T G22081A ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493164 GWHALPR01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A182/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C28253T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493165 GWHALPS01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A191/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G2888T C8782T G18816T A26565C T28144C ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493166 GWHALPT01000001
 2020-01-25 2020-07-21
 China SARS-CoV-2/Wuhan_A192/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G7615A A13175G ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_497860
 2020-01-25 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C745T C26198T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509505
 2020-01-25 2020-08-05
 Australia hCoV-19/Australia/NSW2153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_529991
 2020-01-25 2020-09-10
 Spain hCoV-19/Spain/MD-H12-59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C25418A C26873T G27147T C28854T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539334
 2020-01-25 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P5/2020
 T25525A

GWHAORD01000001
 2020-01-25 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P2.1/2020
 

MW011763
 2020-01-25 2020-09-16
 China SARS-CoV-2/human/CHN/P5-SARS-CoV-2/2020
 T25525A

CNA0013697
 2020-01-26 2020-03-09
 China Guangzhou/GZ8H0001/2020
 ATTAAAGGTTT1- C8782T C12534T C13072T T28144C ATGA29866GCTG AA29871CT A29874T AAA29876TGG A29881G AAAAA29883GCCCT AAAAA29890TGTGT AA29899TT A29903TTTTAGTAGTGCT

CNA0013698
 2020-01-26 2020-03-09
 China Guangzhou/GZ8H0002/2020
 ATTAAAGGTTTATA1- C16A C8782T C12534T C13072T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

CNA0013702
 2020-01-26 2020-03-09
 China Guangzhou/GZ8H0007/2020
 ATTAAAGGTTTAT1- C8782T C12534T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

CNA0013708
 2020-01-26 2020-03-09
 China Guangzhou/GZ8H0016/2020
 ATTAAAGGTTTAT1- C15324T C17550T C29303T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875C

EPI_ISL_413518 MT135041
 2020-01-26 2020-03-02
 China SARS-CoV-2/human/CHN/105/2020
 T4402C G5062T C8782T T28144C

EPI_ISL_413692 CNA0013889
 2020-01-26 2020-03-09
 China Weifang/WFCDC0002/2020
 ATTAAAGGTTT1- T22020C G24680T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416042
 2020-01-26 2020-03-20
 China hCoV-19/Hangzhou/ZJU-02/2020
 -T2AGAGTGCTTAG GG7AT -10TTAATCAGCACGAAGTTCTACTTGCACCA C8782T T28144C

EPI_ISL_416473
 2020-01-26 2020-03-22
 China hCoV-19/Hangzhou/ZJU-08/2020
 A1CCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCAAGCAGAAGACGGCATACGAGATGCGCA AA5GT -8ACTGGA T11C T13G -16GTGTGCT C21G GG23TC AAC26- C8782T C18060T T28144C

EPI_ISL_421239
 2020-01-26 2020-04-07
 China hCoV-19/Shangrao/JX105/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G1265A C8782T C10741T T28144C AAAAAAAAAAAA29892-

EPI_ISL_421253
 2020-01-26 2020-04-07
 China hCoV-19/Jian/JX129/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T21111G G24680T C25539T AAAAAAAAAAAA29892-

EPI_ISL_421260
 2020-01-26 2020-04-07
 China hCoV-19/Xinyu/JX124/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G1397A G11083T G24812T T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_428466 NMDC60013129-01
 2020-01-26 2020-04-21
 China hCoV-19/Guangdong/20SF629/2020
 G4184A C11074T G11083T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428467 NMDC60013130-01
 2020-01-26 2020-04-21
 China hCoV-19/Guangdong/20SF630/2020
 C4890T C17373T G28041T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428468 NMDC60013131-01
 2020-01-26 2020-04-21
 China hCoV-19/Guangdong/20SF632/2020
 C4890T C17373T G28041T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437619 MT447159
 2020-01-26 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200478-NST/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C9996T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_447915
 2020-01-26 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_269/2020
 C9996T G26144T AAAAAAAAAAAA29892-

EPI_ISL_450501 GWHACDF01000001 MT259227
 2020-01-26 2020-03-26
 China SARS-CoV-2/Wuhan_YB012611/human/2020/CHN
 ATTAAAGGTTTATA1- T1623C T3299C C20692T C25156T AT29844GG TT29847GG G29868C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_450502 GWHACDG01000001 MT259228
 2020-01-26 2020-03-26
 China SARS-CoV-2/Wuhan_YB012605/human/2020/CHN
 ATTAAAGGTTTATA1- C20692T TT29845GA G29861A G29868C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_450503 GWHACDH01000001 MT259229
 2020-01-26 2020-03-26
 China SARS-CoV-2/Wuhan_YB012602/human/2020/CHN
 ATTAAAGGTTTATA1- C20692T G29868C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_451312
 2020-01-26 2020-05-24
 China hCoV-19/China/SC-GA-061/2020
 C683T A3368- C18512T G18525- C25317T

EPI_ISL_451313
 2020-01-26 2020-05-24
 China hCoV-19/China/SC-GA-062/2020
 T23287G C26478T

EPI_ISL_451365
 2020-01-26 2020-05-24
 China hCoV-19/China/SC-PHCC2-045/2020
 C8782T A22206G C25317T T28144C

EPI_ISL_455680 GWHAMMJ01000001 MT534630
 2020-01-26 2020-05-29
 China SARS-CoV-2/human/CHN/Changzhou_JS27/2020
 G11083T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_455686 MT407652
 2020-01-26 2020-04-27
 China SARS-CoV-2/human/CHN/CN3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- A19722G C23525T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_455687 MT407653
 2020-01-26 2020-04-27
 China SARS-CoV-2/human/CHN/CN4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C2485T T3380C C8782T T9370G T13954G C18060T T28144C AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_493167 GWHALRI01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C5/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A23116T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493168 GWHALRJ01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C7/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T T28144C ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493169 GWHALRK01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C10/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- T4402C G5062T C8782T C22747T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493170 GWHALRL01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C12/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493171 GWHALRM01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C13/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C18060T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493172 GWHALRN01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C14/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A1620C C2623T A25383G C28253T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493173 GWHALRO01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C26/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- T5905C C8782T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493174 GWHALRP01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C31/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G8432T C8782T G18712T T28144C C29095T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493175 GWHALRQ01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C43/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C7482T C8782T C12513T C27213T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493176 GWHALRR01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C45/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G15907A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493177 GWHALRS01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C47/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493178 GWHALRT01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C77/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T T13402G T28144C ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493179 GWHALRU01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C93/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T T13402G ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493180 GWHALRV01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C94/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C13730T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493181 GWHALRW01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C98/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17410T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493182 GWHALRX01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C100/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493183 GWHALRY01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C101/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T T28144C ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493184 GWHALRZ01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C102/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17410T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493185 GWHALSA01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C103/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17410T T28144C ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_493186 GWHALSB01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C106/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C16349T C17410T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493188 GWHALSC01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C109/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17410T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493189 GWHALSD01000001
 2020-01-26 2020-07-21
 China SARS-CoV-2/Wuhan_C111/human/2020/CHN
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17410T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_529992
 2020-01-26 2020-09-10
 Spain hCoV-19/Spain/MD-H12-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3473A C8782T C19983T C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539337
 2020-01-26 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P8/2020
 T25525A

MW011766
 2020-01-26 2020-09-16
 China SARS-CoV-2/human/CHN/P8-SARS-CoV-2/2020
 T25525A

EPI_ISL_410044 MT044258
 2020-01-27 2020-02-11
 United States 2019-nCoV/USA-CA6/2020
 TGGTCATGTTATGGT508- AAGTCATTT686- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_410713
 2020-01-27 2020-02-18
 Singapore hCoV-19/Singapore/7/2020
 G26144T C28849T AAAAAAAAAAAA29892-

EPI_ISL_411902
 2020-01-27 2020-02-21
 Cambodia hCoV-19/Cambodia/0012/2020
 A1- G25654T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_413522 MT012098
 2020-01-27 2020-02-01
 India SARS-CoV-2/human/IND/29/2020
 ATTAAAGGTTTAT1- T2277C C6695T C14657T C17373T TTA21991- G22785T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413693 CNA0013888
 2020-01-27 2020-03-09
 China Weifang/WFCDC0003/2020
 ATTAAAGGTTTAT1- C2334T C26198T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_413694 CNA0013887
 2020-01-27 2020-03-09
 China Weifang/WFCDC0004/2020
 ATTAAAGGTTT1- T22020C G24680T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_418996
 2020-01-27 2020-04-01
 Singapore hCoV-19/Singapore/15/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_421247
 2020-01-27 2020-04-07
 China hCoV-19/Nanchang/JX149/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_421256
 2020-01-27 2020-04-07
 China hCoV-19/Jian/JX169/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C11575A G26144T G26640T AAAAAAAAAAAA29892-

EPI_ISL_421259
 2020-01-27 2020-04-07
 China hCoV-19/Pingxiang/JX151/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C22323T AAAAAAAAAAAA29892-

EPI_ISL_424359 GWHACBB01000001 MT291835
 2020-01-27 2020-04-19
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ05/2020
 ATTAA1- T7082C C15866G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_424359 GWHACBB01000001 MT291835
 2020-01-27 2020-04-19
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ05/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C186T C23520T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_428469 NMDC60013132-01
 2020-01-27 2020-04-21
 China hCoV-19/Guangdong/20SF665/2020
 TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428470 NMDC60013133-01
 2020-01-27 2020-04-21
 China hCoV-19/Guangdong/20SF684/2020
 C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428471 NMDC60013134-01
 2020-01-27 2020-04-21
 China hCoV-19/Guangdong/20SF685/2020
 C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428473 NMDC60013136-01
 2020-01-27 2020-04-21
 China hCoV-19/Guangdong/20SF758/2020
 C815T C12213T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429102 CNA0013954
 2020-01-27 2020-04-23
 China Guangzhou/GZMU0059/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_434566 MT114415
 2020-01-27 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-903b/2020
 G1397A G11083T T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_434567 MT114416
 2020-01-27 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-907a/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C6501T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_434569 MT114418
 2020-01-27 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-908a/2020
 C8092T G11083T AAAAAAAAAAAA29892-

EPI_ISL_451319
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-MY-053/2020
 C635T T28144C C28253T

EPI_ISL_451320
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-MY-054/2020
 T28144C

EPI_ISL_451339
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-NJ-090/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500-

EPI_ISL_451351
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-PHCC1-030/2020
 C9565A G10178- G17590T T28144C

EPI_ISL_451353
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-PHCC1-032/2020
 T28144C

EPI_ISL_451359
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-PHCC2-039/2020
 G26458A

EPI_ISL_451381
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-WCH-311/2020
 AT1- G26144T

EPI_ISL_451384
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-WCH3-255/2020
 C8782T T28144C

EPI_ISL_451387
 2020-01-27 2020-05-24
 China hCoV-19/China/SC-WCH4-285/2020
 

EPI_ISL_462283
 2020-01-27 2020-06-08
 Singapore hCoV-19/Singapore/165/2020
 T4693Y T9642C A11451G C25214T C26873Y AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_518548 MT971484
 2020-01-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5749/2020
 ATTAAAGGTTTA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_529993
 2020-01-27 2020-09-10
 Spain hCoV-19/Spain/MD-H12-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G22468T A23403G A24129G GGG28881AAC T29685G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539336
 2020-01-27 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P7/2020
 T25525A

MT123292
 2020-01-27 2020-02-28
 China SARS-CoV-2/human/CHN/IQTC04/2020
 A1C C8782T C12534T C13072T T28144C A29873T AAA29876GGT AAA29880GCG -29886TTCCTTGTC AA29888CT A29892C AA29894CG AAAAA29899GGCGC

MW011765
 2020-01-27 2020-09-16
 China SARS-CoV-2/human/CHN/P7-SARS-CoV-2/2020
 T25525A

CNA0013703
 2020-01-28 2020-03-09
 China Guangzhou/GZ8H0008/2020
 ATTAAAGGTTTATA1- G6819T C13072T G29527A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_406862
 2020-01-28 2020-01-31
 Germany hCoV-19/Germany/BavPat1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_407894 MT050414
 2020-01-28 2020-02-06
 Australia SARS-CoV-2/human/AUS/QLD01/2020_FSS915
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C8782T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_410045 MT044257
 2020-01-28 2020-02-11
 United States 2019-nCoV/USA-IL2/2020
 T490A C3177T C8782T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_411219
 2020-01-28 2020-02-19
 France hCoV-19/France/IDF0386-islP1/2020
 G22661T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_411220
 2020-01-28 2020-02-19
 France hCoV-19/France/IDF0386-islP3/2020
 G22661T G26144T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_411927
 2020-01-28 2020-02-21
 Taiwan hCoV-19/Taiwan/4/2020
 A1- AAAAAAAAAAAA29892-

EPI_ISL_413519 MT135042
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/231/2020
 T4402C G5062T C8782T T28144C

EPI_ISL_413520 MT135043
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/233/2020
 T4402C G5062T C8782T T28144C A29301T

EPI_ISL_413521 MT135044
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/235/2020
 T4402C G5062T C8782T T28144C

EPI_ISL_416318
 2020-01-28 2020-03-20
 China hCoV-19/Shanghai/SH0004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C23347T T28144C C29095T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416319
 2020-01-28 2020-03-20
 China hCoV-19/Shanghai/SH0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T28144C C29095T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416320
 2020-01-28 2020-03-20
 China hCoV-19/Shanghai/SH0007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A22695G C24370T T27554C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416321
 2020-01-28 2020-03-20
 China hCoV-19/Shanghai/SH0008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C203T C14889T C21707T C26533T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416474
 2020-01-28 2020-03-22
 China hCoV-19/Hangzhou/ZJU-09/2020
 A1CCCCCCCTTTTCAAGCAGAAGACGGCATACGAGA T3C A5T -G7GCCGGTGACTGGAGTTCAGACGTGTGCTCTTCCA T10C T22303G

EPI_ISL_424357 GWHACAZ01000001 MT291833
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ03/2020
 ATTAAAGGTTTATACCTTCC1- T4402C G5062T C8782T T28144C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_424357 GWHACAZ01000001 MT291833
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ03/2020
 ATTAAAGGTTTATACCTTCC1- T4402C G5062T C8782T T28144C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_424358 GWHACBA01000001 MT291834
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ04/2020
 ATTAAAGG1- G2875A T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_424358 GWHACBA01000001 MT291834
 2020-01-28 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ04/2020
 ATTAAAGG1- G2875A T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_428472 NMDC60013135-01
 2020-01-28 2020-04-21
 China hCoV-19/Guangdong/20SF753/2020
 G16188T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428474 NMDC60013137-01
 2020-01-28 2020-04-21
 China hCoV-19/Guangdong/20SF808/2020
 C12741T C27150T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428475 NMDC60013138-01
 2020-01-28 2020-04-21
 China hCoV-19/Guangdong/20SF812/2020
 C2749T C15324T C16658T C25810G G28827A C29303T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428476 NMDC60013139-01
 2020-01-28 2020-04-21
 China hCoV-19/Guangdong/20SF813/2020
 C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429853
 2020-01-28 2020-04-24
 China hCoV-19/Lishui/LS556/2020
 ATTAAAGGTTT1- C3885A C12778T T13270C G29449T AA29893CT AAAAAA29898C

EPI_ISL_430443
 2020-01-28 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC085/2020
 A1G TA3AC T3163A T16272C G27147C G29862T GAA29864CCT GA29868CC AAA29872GGT A29877C AA29881CC AAAAAAAAAAAAAAAAAAA29885C

EPI_ISL_450198 MT270101
 2020-01-28 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat1-ChVir929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450200 MT270103
 2020-01-28 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat3-ChVir1020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_451376
 2020-01-28 2020-05-24
 China hCoV-19/China/SC-WCH1-005/2020
 C8529T G20635A C22482T G26144T

EPI_ISL_451378
 2020-01-28 2020-05-24
 China hCoV-19/China/SC-WCH2-017/2020
 C26370T C29640T G29742A

EPI_ISL_529994
 2020-01-28 2020-09-10
 Spain hCoV-19/Spain/MD-H12-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G22468T A23403G A24129G GGG28881AAC T29685G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539335
 2020-01-28 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P6/2020
 A8891G T13781G T25525A

MW011764
 2020-01-28 2020-09-16
 China SARS-CoV-2/human/CHN/P6-SARS-CoV-2/2020
 A8891G T13781G T25525A

NMDC60013275
 2020-01-28 2020-06-01
 China hCoV-19/Guangzhou/ID104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G26144T C29870A

NMDC60013276
 2020-01-28 2020-06-01
 China hCoV-19/Guangzhou/ID097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10604T A11822G C29303T G29868A

CNA0013699
 2020-01-29 2020-03-09
 China Guangzhou/GZ8H0003/2020
 -2AACAAACCCAAGGAAATTGTCCGGACCAGGAACTAATCAGACAACGAACTGA A5C G7AACATT TTTA9GCCG C8782T C12534T C13072T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

CNA0013704
 2020-01-29 2020-03-09
 China Guangzhou/GZ8H0010/2020
 ATTAAAGGTTT1- G6819T T6996C C17373T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872C

CNA0013705
 2020-01-29 2020-03-09
 China Guangzhou/GZ8H0011/2020
 ATTAAAGGTTT1- G6819T C17373T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_407071
 2020-01-29 2020-02-03
 United Kingdom hCoV-19/England/01/2020
 C8782T T18488C T22586Y T23605G T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_407073
 2020-01-29 2020-02-03
 United Kingdom hCoV-19/England/02/2020
 C8782T T18488C T23605G T28144C A29596G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_408008 MT027062
 2020-01-29 2020-02-06
 United States 2019-nCoV/USA-CA3/2020
 G614A A5084G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_408009 MT027063
 2020-01-29 2020-02-06
 United States 2019-nCoV/USA-CA4/2020
 G614A A5084G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_408010 MT027064
 2020-01-29 2020-02-06
 United States 2019-nCoV/USA-CA5/2020
 C2091T C21707T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_408430
 2020-01-29 2020-02-08
 France hCoV-19/France/IDF0515/2020
 A1- C1190T C9438T G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_408431
 2020-01-29 2020-02-08
 France hCoV-19/France/IDF0626/2020
 ATTAAAGGTTT1- C25153T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_408665 LC522973
 2020-01-29 2020-02-10
 Japan 2019-nCoV/Japan/TY/WK-012/2020
 ATT1- C2662T C3792T C8782T T28144C C29095T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_408669 LC522972
 2020-01-29 2020-02-10
 Japan 2019-nCoV/Japan/KY/V-029/2020
 ATT1- G11557T C15324T C25810G C29303T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_409067 MT039888
 2020-01-29 2020-02-11
 United States 2019-nCoV/USA-MA1/2020
 G3518T G5480R A17423G C24034T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_410545
 2020-01-29 2020-02-17
 Italy hCoV-19/Italy/INMI1-isl/2020
 A2269T G26144T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_410984
 2020-01-29 2020-02-18
 France hCoV-19/France/IDF0515-isl/2020
 C1190T C9438T G11083T

EPI_ISL_412967 MT123291
 2020-01-29 2020-02-28
 China SARS-CoV-2/human/CHN/IQTC02/2020
 A1CCCTGAATTAGACTCA -4CAAGG G6819T C17373T C19610T G29527A A29886CCTTGT A29888G A29890G A29892G AA29894GT AA29902TT

EPI_ISL_412974
 2020-01-29 2020-03-01
 Italy hCoV-19/Italy/SPL1/2020
 G11083T G26144T

EPI_ISL_416322
 2020-01-29 2020-03-20
 China hCoV-19/Shanghai/SH0009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C17372T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416323
 2020-01-29 2020-03-20
 China hCoV-19/Shanghai/SH0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C3176T C8782T C21855T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416324
 2020-01-29 2020-03-20
 China hCoV-19/Shanghai/SH0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C12896T C17373T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_418993
 2020-01-29 2020-04-01
 Singapore hCoV-19/Singapore/20/2020
 C865T C6573Y C8782T C13694T C18060T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_418994
 2020-01-29 2020-04-01
 Singapore hCoV-19/Singapore/3Clin/2020
 G261K G9953R T9959Y G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_421238
 2020-01-29 2020-04-07
 China hCoV-19/Nanchang/JX174/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T G13183A T28144C C29095T AAAAAAAAAAAA29892-

EPI_ISL_421261
 2020-01-29 2020-04-07
 China hCoV-19/Nanchang/JX176/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G1397A G24812T A28305C T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_421262
 2020-01-29 2020-04-07
 China hCoV-19/Nanchang/JX155/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G1397A G11083T G24812T A28305C T28688C G29742T AAAAAAAAAAAA29892-

EPI_ISL_424360 GWHACBD01000001 MT291836
 2020-01-29 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ07/2020
 ATTAAAGG1- C8782T C23271T C24023T G26526T G27225T T28144C C28887T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_424360 GWHACBD01000001 MT291836
 2020-01-29 2020-03-02
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ07/2020
 ATTAAAGG1- C8782T C23271T C24023T G26526T G27225T T28144C C28887T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_428441 NMDC60013104-01
 2020-01-29 2020-04-21
 China hCoV-19/Guangdong/20SF1107/2020
 A3842G C8782T C25521T G27632A T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428478 NMDC60013141-01
 2020-01-29 2020-04-21
 China hCoV-19/Guangdong/20SF840/2020
 C4890T C17373T G28041T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429096 CNA0013948
 2020-01-29 2020-04-23
 China Guangzhou/GZMU0051/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429097 CNA0013949
 2020-01-29 2020-04-23
 China Guangzhou/GZMU0052/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429098 CNA0013950
 2020-01-29 2020-04-23
 China Guangzhou/GZMU0054/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429105 CNA0013957
 2020-01-29 2020-04-23
 China Guangzhou/GZMU0055/2020
 C21707T A29866G G29868A C29870A AA29872TT AAAA29876TTTT AA29881GT AAAA29884GCGC

EPI_ISL_430722
 2020-01-29 2020-04-27
 China hCoV-19/Beijing/BJ287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C23271T C24023T G26526T G27225T T28144C C28887T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_430725
 2020-01-29 2020-04-27
 China hCoV-19/Beijing/BJ288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C23271T C24023T G26526T G27225T T28144C C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430736
 2020-01-29 2020-04-27
 China hCoV-19/Beijing/BJ252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10604T A15647G A21137G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430742
 2020-01-29 2020-04-27
 China hCoV-19/Beijing/BJ251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C10604T A15647G A21137G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434568 MT114417
 2020-01-29 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-907b/2020
 C6501T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_434570 MT114419
 2020-01-29 2020-02-24
 China SARS-CoV-2/human/HKG/HKU-908b/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8092T G11083T AAAAAAAAAAAAAAAA29888-

EPI_ISL_435137
 2020-01-29 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L5630/2020
 C8782T C12880T T28144C C29095T

EPI_ISL_437618 MT447160
 2020-01-29 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200615-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G2117T C2915A G15327T G25217T GAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29745-

EPI_ISL_447916
 2020-01-29 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_323/2020
 C6941T A18114G C26370T AAAAAAAAAAAA29892-

EPI_ISL_447917
 2020-01-29 2020-05-19
 Thailand hCoV-19/Thailand/Nonthaburi_363/2020
 C1150T G26144T AAAAAAAAAAAA29892-

EPI_ISL_450199 MT270102
 2020-01-29 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat4-ChVir1019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G6446A C9891Y A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_451330
 2020-01-29 2020-05-24
 China hCoV-19/China/SC-NC-071/2020
 AAGATTTTC729- C26404T T28144C

EPI_ISL_451335
 2020-01-29 2020-05-24
 China hCoV-19/China/SC-NC-076/2020
 C17676T CC18109-T

EPI_ISL_451336
 2020-01-29 2020-05-24
 China hCoV-19/China/SC-NC-077/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G11369A

EPI_ISL_451363
 2020-01-29 2020-05-24
 China hCoV-19/China/SC-PHCC2-043/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500-

EPI_ISL_451366
 2020-01-29 2020-05-24
 China hCoV-19/China/SC-PHCC2-046/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- CC18109-T TG18987-

EPI_ISL_497771
 2020-01-29 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T13929C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497797
 2020-01-29 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9967T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497827
 2020-01-29 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9967T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529995
 2020-01-29 2020-09-10
 Spain hCoV-19/Spain/MD-H12-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G22468T A23403G A24129G GGG28881AAC T29685G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539338
 2020-01-29 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P10/2020
 T25525A

EPI_ISL_539339
 2020-01-29 2020-09-16
 China hCoV-19/Hunan/HN-CIDC-P11/2020
 C15951T T25525A

MT020781
 2020-01-29 2020-02-04
 Finland nCoV-FIN-29-Jan-2020
 A1C C21707T TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807-

MT123293
 2020-01-29 2020-02-28
 China SARS-CoV-2/human/CHN/IQTC03/2020
 ATTAAA1- G654A G6819T T6996C C17373T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

MW011767
 2020-01-29 2020-09-16
 China SARS-CoV-2/human/CHN/P10-SARS-CoV-2/2020
 T25525A

MW011768
 2020-01-29 2020-09-16
 China SARS-CoV-2/human/CHN/P11-SARS-CoV-2/2020
 C15951T T25525A

NMDC60013277
 2020-01-29 2020-06-01
 China hCoV-19/Guangzhou/ID100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C26447G T28144C T28250G A28254- C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_407896 MT050415
 2020-01-30 2020-02-06
 Australia SARS-CoV-2/human/AUS/QLD02/2020_FSS916
 ATTAAA1- C8782T C24990T C25587T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_412029
 2020-01-30 2020-02-24
 China hCoV-19/Hong Kong/VB20024950-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T13929C G26144T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_412869
 2020-01-30 2020-02-28
 South Korea hCoV-19/South Korea/KCDC05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- A1740C T8767C C8782T C17104T G26167T T28144C G29593A A29869G AAAAAAAAAAAAAAAA29888-

EPI_ISL_412870
 2020-01-30 2020-02-28
 South Korea hCoV-19/South Korea/KCDC06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_413853 NMDC60013020-01
 2020-01-30 2020-03-09
 China hCoV-19/Guangdong/2020XN4243-P0035/2020
 C8782T T28144C G28878A G29742A

EPI_ISL_413854 NMDC60013021-01
 2020-01-30 2020-03-09
 China hCoV-19/Guangdong/2020XN4475-P0042/2020
 C6501T C8782T T28144C

EPI_ISL_413858 NMDC60013025-01
 2020-01-30 2020-03-09
 China hCoV-19/Guangdong/2020XN4459-P0041/2020
 C8782T T28144C

EPI_ISL_413860 NMDC60013027-01
 2020-01-30 2020-03-09
 China hCoV-19/Guangdong/2020XN4273-P0036/2020
 T8767C C8782T T28144C G29593A

EPI_ISL_414941
 2020-01-30 2020-03-16
 China hCoV-19/Shandong/LY008-2/2020
 ATTAAAGGTTTATACC1- T3171C C8782T T28144C AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_416326
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416331
 2020-01-30 2020-03-20
 China hCoV-19/China/Shanghai/SH0022
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1397A A10323G C11074T G11083T T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416332
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1397A A10323G C11074T G11083T T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416333
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416352
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416365
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T4463C C4596T A5084G T7144A T8800C C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416366
 2020-01-30 2020-03-20
 China hCoV-19/Shanghai/SH0059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G285T C8782T T23986C G25947T T28144C C29095T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421241
 2020-01-30 2020-04-07
 China hCoV-19/Nanchang/JX177/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C3768T T8767C C8782T C12076T T28144C AAAAAAAAAAAA29892-

EPI_ISL_425118
 2020-01-30 2020-04-14
 South Korea hCoV-19/Korea/KCDC2002/2020
 ATTAAAGGTTTATACCT1- T8767C C8782T C17104T G26167T T28144C G29593A

EPI_ISL_428442 NMDC60013105-01
 2020-01-30 2020-04-21
 China hCoV-19/Guangdong/20SF1136/2020
 G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428444 NMDC60013107-01
 2020-01-30 2020-04-21
 China hCoV-19/Guangdong/20SF1152/2020
 G3518T G12797A A17423G G28655T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428445 NMDC60013108-01
 2020-01-30 2020-04-21
 China hCoV-19/Guangdong/20SF1153/2020
 A5084G G27261A C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_450209 MT270112
 2020-01-30 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat2-ChVir984-ChVir1017/2020
 ATTAAAGGTTTATAC1- C241T C3037T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_450409 MT365029
 2020-01-30 2020-04-17
 China SARS-CoV-2/human/HKG/HKU-911a/2020
 C9967T AAAAAAAAAAAA29892-

EPI_ISL_450412 MT365032
 2020-01-30 2020-04-17
 China SARS-CoV-2/human/HKG/HKU-904a/2020
 ATTA1- C4158T C8782T C18828T T28144C AAAAAAAAAAAA29892-

EPI_ISL_451302
 2020-01-30 2020-05-24
 Italy hCoV-19/Italy/INMI2-N/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_451314
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-GA-063/2020
 C18512T

EPI_ISL_451315
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-GA-064/2020
 C18512T

EPI_ISL_451332
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-NC-073/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C17573T A18535- T28144C

EPI_ISL_451334
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-NC-075/2020
 C3037T C16247T

EPI_ISL_451337
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-NC-078/2020
 C18060T G20275T T28144C G28195T

EPI_ISL_451343
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-NJ-094/2020
 CC18109-T A22511G

EPI_ISL_451389
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-WCH4-287/2020
 C19145T T28144C

EPI_ISL_451395
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-WCH4-301/2020
 A13175G C17676T

EPI_ISL_451396
 2020-01-30 2020-05-24
 China hCoV-19/China/SC-YA-087/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C17373T CC18109-T

EPI_ISL_455603
 2020-01-30 2020-06-01
 Australia hCoV-19/Australia/VPRL014/2020
 C3037T C17074T C27213T T27384C

EPI_ISL_455790
 2020-01-30 2020-06-01
 Malaysia hCoV-19/Malaysia/IMR_WC119/2020
 ATTAAAGGTTTATACCTTCCCA1- G4390T C5717T C8782T G16075T T28144C TAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29693-

EPI_ISL_463894
 2020-01-30 2020-06-10
 China hCoV-19/Shaoxing/02/2020
 ATTAAAG1- C8782T T28144C AAAAAAAAAAAAAAAAA29887-

EPI_ISL_463895
 2020-01-30 2020-06-10
 China hCoV-19/Shaoxing/03/2020
 ATTAAAGGTT1- C8782T T28144C

EPI_ISL_468032
 2020-01-30 2020-06-16
 Australia hCoV-19/Australia/SAP214/2020
 AT1- C3037T C17074T C27213T T27384C

EPI_ISL_468037
 2020-01-30 2020-06-16
 Australia hCoV-19/Australia/SAP305/2020
 C3037T C17074T C27213T T27384C

EPI_ISL_480779 MT745747
 2020-01-30 2020-07-02
 Australia SARS-CoV-2/human/AUS/SA02/2020
 C3037T C17074T C27213T T27384C

EPI_ISL_480780 MT745748
 2020-01-30 2020-07-02
 Australia SARS-CoV-2/human/AUS/SA03/2020
 C3037T C17074T C27213T T27384C

EPI_ISL_497962
 2020-01-30 2020-07-26
 South Korea hCoV-19/Korea/KCDC2061/2020
 ATTAAA1- A26- C28T G7675T T8767C C8782T C17104T C18167T G26167T T28144C G29134A G29593A C29743T T29867A

EPI_ISL_529996
 2020-01-30 2020-09-10
 Spain hCoV-19/Spain/MD-H12-65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C3037T C14408T A20268G C21742T A23403G C26735T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT066156
 2020-01-30 2020-02-14
 Italy SARS-CoV-2/human/ITA/INMI1/2020
 A2269T G26144T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

CNA0013700
 2020-01-31 2020-03-09
 China Guangzhou/GZ8H0004/2020
 AT1GC AA4GC G8A -A11TGGAG C8782T C12534T C13072T G27235A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

CNA0013701
 2020-01-31 2020-03-09
 China Guangzhou/GZ8H0005/2020
 A1G A4G -11TTAATTGTTACTTTCCTTTACAATCATATGGTTTCCAACCCAC C8782T C12534T C13072T T28144C A29878G A29882G A29887G A29890G A29893G A29896G AAAAA29899-

EPI_ISL_408489 MT066175
 2020-01-31 2020-02-09
 Taiwan SARS-CoV-2/NTU01/TWN/human/2020
 C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_408666 LC522974
 2020-01-31 2020-02-10
 Japan 2019-nCoV/Japan/TY/WK-501/2020
 ATT1- C2662T C8782T T28144C C29095T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_408667 LC522975
 2020-01-31 2020-02-10
 Japan 2019-nCoV/Japan/TY/WK-521/2020
 ATT1- C2662T C8782T T28144C C29095T G29705T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_408670 MT039887
 2020-01-31 2020-02-10
 United States 2019-nCoV/USA-WI1/2020
 C17373T ATT20298- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_410546
 2020-01-31 2020-02-17
 Italy hCoV-19/Italy/INMI1-cs/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- G11083T G26144T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_412871
 2020-01-31 2020-02-28
 South Korea hCoV-19/South Korea/KCDC07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- C1779T T4402C G5062T C8782T C15017T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_413523 MT050493
 2020-01-31 2020-02-11
 India SARS-CoV-2/human/IND/166/2020
 ATTAAAGGTTTATACCTTCC1- A1691G C6501T C8782T C16877T C24351T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_413857 NMDC60013024-01
 2020-01-31 2020-03-09
 China hCoV-19/Guangdong/2020XN4448-P0002/2020
 A1430G G5155A G16535T C18568T A19705G

EPI_ISL_416390
 2020-01-31 2020-03-20
 China hCoV-19/Shanghai/SH0094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3885A G6513T G20335A G29449T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428488
 2020-01-31 2020-04-21
 Taiwan hCoV-19/Taiwan/8/2020
 ATTA1- C8299T A28792T AAAAAAAAAAAA29892-

EPI_ISL_428489
 2020-01-31 2020-04-21
 Taiwan hCoV-19/Taiwan/5/2020
 A4T C8299T A28792T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_447913
 2020-01-31 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_238/2020
 C2942T G4390T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_450410 MT365030
 2020-01-31 2020-04-17
 China SARS-CoV-2/human/HKG/HKU-913a/2020
 A17423G A20667G C28854T AAAAAAAAAAAA29892-

EPI_ISL_451325
 2020-01-31 2020-05-24
 China hCoV-19/China/SC-MY-059/2020
 C1342T C10507T C18060T T28144C

EPI_ISL_451344
 2020-01-31 2020-05-24
 China hCoV-19/China/SC-NJ-095/2020
 

EPI_ISL_451374
 2020-01-31 2020-05-24
 China hCoV-19/China/SC-WCH-082/2020
 A13175G

EPI_ISL_451397
 2020-01-31 2020-05-24
 China hCoV-19/China/SC-YA-088/2020
 CC18109-T

EPI_ISL_451398
 2020-01-31 2020-05-24
 China hCoV-19/China/SC-YB-085/2020
 

EPI_ISL_452363
 2020-01-31 2020-05-27
 China hCoV-19/Beijing/DT-WH04/2020
 A2966C T28144C C28253T

EPI_ISL_475997
 2020-01-31 2020-06-25
 Singapore hCoV-19/Singapore/466/2020
 C8782T C19910Y T20880Y C23896Y T28144C G28878A AAAAAAAAAAAA29892-

EPI_ISL_476139
 2020-01-31 2020-06-25
 Sweden hCoV-19/Sweden/20-02114/2020
 C12194T A17376G G26144T

EPI_ISL_497963
 2020-01-31 2020-07-26
 South Korea hCoV-19/Korea/KCDC2062/2020
 ATTAAA1- A26- C28T T4402C G5062T C8782T T28144C C29743T

EPI_ISL_529997
 2020-01-31 2020-09-10
 Spain hCoV-19/Spain/MD-H12-66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T C14408T A20268G A23403G T24346C G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

GWHAORL01000001
 2020-01-31 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P6.1/2020
 C8782T T28144C

MT077125
 2020-01-31 2020-02-17
 Italy SARS-CoV-2/human/ITA/INMI1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- G11083T G26144T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

NMDC60013278
 2020-01-31 2020-06-01
 China hCoV-19/Guangzhou/ID101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C26447G T28144C T28250G A28254- C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013283
 2020-01-31 2020-06-01
 China hCoV-19/Guangzhou/ID103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A6659G C8782T C10604T A15647G G23856T T28144C G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_411929 MT039890
 2020-01-xx 2020-02-11
 South Korea SNU01
 G2971T C6031T C12115T T15597C C20936T C22224G G25775T G26144T T26354A

EPI_ISL_414511 LC529905
 2020-01-xx 2020-03-04
 Japan TKYE6182_2020
 C15324T C25810G C29303T

EPI_ISL_434560 MT186683
 2020-01-xx 2020-03-12
 China SARS-CoV-2/human/HKG/HK20/2020
 T13929C T21467C G26144T AAAAAAAAAAAAAAA29889-

EPI_ISL_450201 MT270104
 2020-01-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat6-ChVir1247/2020
 ATTAAAGGTTTATA1- C241T C3037T G6446A A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_450202 MT270105
 2020-01-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat5-ChVir1248/2020
 ATTAAAGGTT1- C241T C3037T G6446A A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_450205 MT270108
 2020-01-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat9-ChVir1433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446A C22323T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450206 MT270109
 2020-01-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat11-ChVir1459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_407988
 2020-02-01 2020-02-07
 Singapore hCoV-19/Singapore/3/2020
 AT1- G11083T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_409024 EPI_ISL_412030
 2020-02-01 2020-02-24
 China hCoV-19/Hong Kong/VB20026565-2/2020
 ATTAAAGGTTTATACCTTCCCA1- G11083T G29841A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_412872
 2020-02-01 2020-02-28
 South Korea hCoV-19/South Korea/KCDC12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- ACAAAAAAAAAAAAAA29869-

EPI_ISL_413861 NMDC60013028-01
 2020-02-01 2020-03-09
 China hCoV-19/Guangdong/GD2020080-P0010/2020
 A11782G C12473T

EPI_ISL_413863 NMDC60013030-01
 2020-02-01 2020-03-09
 China hCoV-19/Guangdong/GD2020087-P0008/2020
 C22787G G26144T

EPI_ISL_416336
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- T49A C14676T C28826T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416338
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C24034T T26729C G28077C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416341
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C24034T T26729C G28077C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416361
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C15324T G20383T C29303T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416367
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A9437T C12473T C25047T A27669T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416370
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C9442T T25209C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416372
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A4550G C8782T T9477A T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416379
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9442T T25209C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416381
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C24034T T26729C G28077C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416387
 2020-02-01 2020-03-20
 China hCoV-19/Shanghai/SH0088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C15324T T24405G C29303T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_418809
 2020-02-01 2020-03-30
 Japan hCoV-19/Japan/UT-NCGM02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2662T C3792T C8782T T28144C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429085 CNA0013938
 2020-02-01 2020-04-23
 China Guangzhou/GZMU0033/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429086 CNA0013939
 2020-02-01 2020-04-23
 China Guangzhou/GZMU0034/2020
 T2A AA4CT C21707T

EPI_ISL_429088 CNA0013940
 2020-02-01 2020-04-23
 China Guangzhou/GZMU0035/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429104 CNA0013956
 2020-02-01 2020-04-23
 China Guangzhou/GZMU0036/2020
 AT1CC A4G C21707T A29866G G29868A C29870A AA29872TT AAAA29876TTTT AA29881GT AAAA29884GTGC

EPI_ISL_429854
 2020-02-01 2020-04-24
 China hCoV-19/Lishui/LS557/2020
 ATTAAAGGTTT1- C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_437624 MT447154
 2020-02-01 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI200893-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C1150T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_447918
 2020-02-01 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_580/2020
 A8388T C8782T T8987C T28144C C29095T AAAA29900-

EPI_ISL_450203 MT270106
 2020-02-01 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat7-ChVir1289/2020
 AT1- C241T C3037T G6446A A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_451316
 2020-02-01 2020-05-24
 China hCoV-19/China/SC-GA-065/2020
 C8281T G26144T

EPI_ISL_451322
 2020-02-01 2020-05-24
 China hCoV-19/China/SC-MY-056/2020
 T28144C

EPI_ISL_451327
 2020-02-01 2020-05-24
 China hCoV-19/China/SC-NC-067/2020
 C17373T

EPI_ISL_451333
 2020-02-01 2020-05-24
 China hCoV-19/China/SC-NC-074/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T28144C C28253T

EPI_ISL_452360
 2020-02-01 2020-05-27
 China hCoV-19/Beijing/DT-WH01/2020
 

EPI_ISL_452362
 2020-02-01 2020-05-27
 China hCoV-19/Beijing/DT-WH03/2020
 T6552G T8022G

EPI_ISL_455466
 2020-02-01 2020-05-30
 China hCoV-19/Yingtan/JX2480/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C2574T T6348C AAAAAAAAAAAA29892-

EPI_ISL_529998
 2020-02-01 2020-09-10
 Spain hCoV-19/Spain/MD-H12-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

GWHAORI01000001
 2020-02-01 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P4.2/2020
 G237T C241T G2229A C3037T C14408T T19561A A23403G

EPI_ISL_410719
 2020-02-02 2020-02-18
 Singapore hCoV-19/Singapore/11/2020
 ATTAAAGG1- A13679G C17373T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_411218
 2020-02-02 2020-02-19
 France hCoV-19/France/IDF0571/2020
 C1190T C9438T G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_413697 CNA0013886
 2020-02-02 2020-03-09
 China Weifang/WFCDC0012/2020
 ATTAAAGGTTTAT1- C207T T946C C8782T A11430G T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_414510 MT121215
 2020-02-02 2020-02-27
 China SARS-CoV-2/human/CHN/SH01/2020
 C6026T C12473T -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_416047
 2020-02-02 2020-03-20
 China hCoV-19/Hangzhou/ZJU-06/2020
 AT1CCCCCTTTTCAAGCAGAAGACGGCATACGAGATACGAATTCGTGAC AA4GG -G7GTTCAGACGTGTGCTCTTCCA T10C C3885A C12778T T13270C G29449T

EPI_ISL_416325
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G21853A G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416330
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C8782T C15480T G25767T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416335
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C207T T946C C6363T C8782T A11430G T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416340
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C3768T A16474G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416362
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G28845T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416397
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G61T C20692T C23533T C26326T G28233A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416398
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C5239T C17373T C28830A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416401
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C20692T C25006T G28233A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416403
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T54A C8782T T9370G T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416405
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C11962T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416409
 2020-02-02 2020-03-20
 China hCoV-19/Shanghai/SH0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1566C C8782T C24034T T26729C G28077C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421257
 2020-02-02 2020-04-07
 China hCoV-19/Shangrao/JX1215/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C21707T AAAAAAAAAAAA29892-

EPI_ISL_426164
 2020-02-02 2020-04-15
 South Korea hCoV-19/Korea/KCDC2004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1-

EPI_ISL_426168
 2020-02-02 2020-04-15
 South Korea hCoV-19/Korea/KCDC2006/2020
 ATTAAAGGTTTATAC1- C16T C4276T T4402C G5062T C8782T T28144C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_430728
 2020-02-02 2020-04-27
 China hCoV-19/Beijing/BJ492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C16293T T28144C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450411 MT365031
 2020-02-02 2020-04-17
 China SARS-CoV-2/human/HKG/HKU-915a/2020
 A17423G C28854T AAAAAAAAAAAA29892-

EPI_ISL_451321
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-MY-055/2020
 A28145C

EPI_ISL_451324
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-MY-058/2020
 T13243C CC18109-T

EPI_ISL_451326
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-MY-060/2020
 G3013T T13243C G27261A T27356C

EPI_ISL_451328
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-NC-068/2020
 C3717T A16824G C17373T

EPI_ISL_451331
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-NC-072/2020
 C3717T A16824G C17373T

EPI_ISL_451383
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-WCH3-254/2020
 C173T A3517G C8782T C21711T C23893T G25909A T28144C G28878A C29555T C29640T G29742A

EPI_ISL_451386
 2020-02-02 2020-05-24
 China hCoV-19/China/SC-WCH4-284/2020
 T14451G

EPI_ISL_529999
 2020-02-02 2020-09-10
 Spain hCoV-19/Spain/MD-H12-68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T C14408T G14863A C19164T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_536435
 2020-02-02 2020-09-16
 Singapore hCoV-19/Singapore/894/2020
 A1- C1780T C8782T T28144C C29095T AAAAAAAAAAAA29892-

NMDC60013279
 2020-02-02 2020-06-01
 China hCoV-19/Guangzhou/ID099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C26447G T28144C T28250G A28254- G29041C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_407976
 2020-02-03 2020-02-07
 Belgium hCoV-19/Belgium/GHB-03021/2020
 C8782T T28144C A29863T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_410535
 2020-02-03 2020-02-17
 Singapore hCoV-19/Singapore/4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T T28144C G28878A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_410714
 2020-02-03 2020-02-18
 Singapore hCoV-19/Singapore/8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C21859T G26144T AGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29797-

EPI_ISL_416339
 2020-02-03 2020-03-20
 China hCoV-19/Shanghai/SH0030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C4655T C8782T G9890T G20527T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416425
 2020-02-03 2020-03-21
 China hCoV-19/Hangzhou/ZJU-07/2020
 -T2AGAGTGCTTAG GG7AT -10TTAATCAGCACGAAGTTCTACTTGCACCA T1405C G9802T A19945G C25267T C27615G

EPI_ISL_418990
 2020-02-03 2020-04-01
 China hCoV-19/Hangzhou/ZJU-010/2020
 ATTAAAGGTTTATACCTTC1- C16114T G22205C -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_421250
 2020-02-03 2020-04-07
 China hCoV-19/Shangrao/JX1177/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C1912T G6266A C12896T C28854T T28867C AAAAAAAAAAAA29892-

EPI_ISL_421251
 2020-02-03 2020-04-07
 China hCoV-19/Shangrao/JX1176/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G845T C1912T A3375C C12896T C28854T T28867C AAAAAAAAAAAA29892-

EPI_ISL_421254
 2020-02-03 2020-04-07
 China hCoV-19/Shangrao/JX1178/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A13555T AAAAAAAAAAAA29892-

EPI_ISL_437617 MT447161
 2020-02-03 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI201712-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G26144T C29774T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_450204 MT270107
 2020-02-03 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat8-ChVir1356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451300
 2020-02-03 2020-05-24
 Italy hCoV-19/Italy/INMI1-N/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2269T G11083T G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_451301
 2020-02-03 2020-05-24
 Italy hCoV-19/Italy/INMI2-B/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_451317
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-GA-066/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G626T A23469T T28144C T28157C

EPI_ISL_451341
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-NJ-092/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- A1087- T13243C

EPI_ISL_451357
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-PHCC1-036/2020
 G1495T C13821T C18377T G29737A

EPI_ISL_451358
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-PHCC2-038/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C TG18987-

EPI_ISL_451372
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-PHCC2-052/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T11566A T17407C CC18109-T

EPI_ISL_451373
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-WCH-081/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- CC18109-T

EPI_ISL_451385
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-WCH3-259/2020
 

EPI_ISL_451394
 2020-02-03 2020-05-24
 China hCoV-19/China/SC-WCH4-293/2020
 C173T C23893T T28144C G28878A C29640T G29742A

EPI_ISL_454919
 2020-02-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-143/2020
 T28144C

EPI_ISL_455463
 2020-02-03 2020-05-30
 China hCoV-19/Jiujiang/JX490/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C9967T AAAAAAAAAAAA29892-

EPI_ISL_489996
 2020-02-03 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/477/2020
 C241T T826C C1218T C3037T C5173T A8031G C14408T A15257G C18877T A23403G G25563T C26735T

EPI_ISL_497783
 2020-02-03 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T13929C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530000
 2020-02-03 2020-09-10
 Spain hCoV-19/Spain/MD-H12-69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10012C C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755883
 2020-02-03 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/477/2020
 C241T T826C C1218T C3037T C5173T A8031G C14408T A15257G C18877T A23403G G25563T C26735T

EPI_ISL_410715
 2020-02-04 2020-02-18
 Singapore hCoV-19/Singapore/9/2020
 C10138T G26144T AAAAAAAAAAAA29892-

EPI_ISL_410716
 2020-02-04 2020-02-18
 Singapore hCoV-19/Singapore/10/2020
 AT1- C10138T G26144T AAAAAAAAAAAA29892-

EPI_ISL_413711 CNA0013885
 2020-02-04 2020-03-09
 China Weifang/WFCDC0014/2020
 ATTAAAGGTT1- C6501T C8782T C16887T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_413761 CNA0013877
 2020-02-04 2020-03-09
 China Weifang/WFCDC0026/2020
 ATTAAAGGTTTAT1- C207T T946C C8782T A11430G T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_416337
 2020-02-04 2020-03-20
 China hCoV-19/Shanghai/SH0028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A14823T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416342
 2020-02-04 2020-03-20
 China hCoV-19/Shanghai/SH0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A871G A3027G C3787T G11083T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416353
 2020-02-04 2020-03-20
 China hCoV-19/Shanghai/SH0044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G2293T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416355
 2020-02-04 2020-03-20
 China hCoV-19/Shanghai/SH0047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3885A C12778T T13270C A23670G T28340C G29449T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416886
 2020-02-04 2020-03-23
 Malaysia hCoV-19/Malaysia/MKAK-CL-2020-6430/2020
 ATTAAAGGTTTAT1- T6025C C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_417518 MT374101
 2020-02-04 2020-02-04
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-02/2020
 C8782T A16841G C21707T C24213T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848-

EPI_ISL_418991
 2020-02-04 2020-04-01
 China hCoV-19/Hangzhou/ZJU-011/2020
 ATTAAAGGTTTATACCTTC1- T22303G TTG27775CGA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_426166
 2020-02-04 2020-04-15
 South Korea hCoV-19/Korea/KCDC2005/2020
 ATTAAAGGTTTATACC1- AAAAAAAAAAAAAAAA29888-

EPI_ISL_447919
 2020-02-04 2020-05-19
 Thailand hCoV-19/Thailand/Samut prakarn_840/2020
 C13665T A23403G G26144T C26895T C29774T AAAAAAAAAAAA29892-

EPI_ISL_451346
 2020-02-04 2020-05-24
 China hCoV-19/China/SC-PHCC1-025/2020
 C8782T T28144C C29095T C29586T

EPI_ISL_451370
 2020-02-04 2020-05-24
 China hCoV-19/China/SC-PHCC2-050/2020
 C8782T T28144C C29095T C29586T

EPI_ISL_451399
 2020-02-04 2020-05-24
 China hCoV-19/China/SC-YB-086/2020
 TAAAA17201- C17373T T25382C

EPI_ISL_452357
 2020-02-04 2020-05-27
 China hCoV-19/Beijing/DT-WH02/2020
 G15327T C18029T G24812T A28305C G29742T

EPI_ISL_454981
 2020-02-04 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-240/2020
 

EPI_ISL_455391
 2020-02-04 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-228/2020
 TG14865- G20623T A20636- G22343C

EPI_ISL_489997
 2020-02-04 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/492/2020
 C241T C3037T A5277G C14408T C18877T A23403G G23426T T24295C G25563T C26735T

EPI_ISL_530001
 2020-02-04 2020-09-10
 Spain hCoV-19/Spain/MD-H12-70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T C14408T A20268G A23403G C25427T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755884
 2020-02-04 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/492/2020
 C241T C3037T A5277G C14408T C18877T A23403G G23426T T24295C G25563T C26735T

EPI_ISL_410218 MT066176
 2020-02-05 2020-02-13
 Taiwan SARS-CoV-2/NTU02/TWN/human/2020
 A9034G C9491T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_410717 MT050416
 2020-02-05 2020-02-18
 Australia SARS-CoV-2/human/AUS/QLD03/2020_FSS917
 ATTAA1- C8782T T18603C T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_410718
 2020-02-05 2020-02-18
 Australia hCoV-19/Australia/QLD04/2020
 ATTAA1- C8782T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_412966 MT123290
 2020-02-05 2020-02-27
 China SARS-CoV-2/human/CHN/IQTC01/2020
 A1C A4T C15324T C29303T AA29884GG A29887G AAAAAAAAAAAAAAA29889-

EPI_ISL_413729 CNA0013884
 2020-02-05 2020-03-09
 China Weifang/WFCDC0015/2020
 ATTAAAGGTTT1- C8782T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_413746 CNA0013883
 2020-02-05 2020-03-09
 China Weifang/WFCDC0016/2020
 ATTAAAGGTTTAT1- C8782T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_413791 CNA0013876
 2020-02-05 2020-03-09
 China Weifang/WFCDC0028/2020
 ATTAAAGGTTT1- C207T T946C C8782T A11430G A16474G C25000A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_414040
 2020-02-05 2020-03-11
 United Kingdom hCoV-19/England/200641094/2020
 ATG1605- A24495R A28052W

EPI_ISL_416376
 2020-02-05 2020-03-20
 China hCoV-19/Shanghai/SH0073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421240
 2020-02-05 2020-04-07
 China hCoV-19/Shangrao/JX1948/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_426169
 2020-02-05 2020-04-15
 South Korea hCoV-19/Korea/KCDC2007/2020
 ATTAAAGGTTTATAC1-

EPI_ISL_426171
 2020-02-05 2020-04-15
 South Korea hCoV-19/Korea/KCDC2008/2020
 ATT1- T4402C G5062T C8782T C11572T T28144C AAAAAAA29897-

EPI_ISL_426180
 2020-02-05 2020-04-15
 South Korea hCoV-19/Korea/KCDC2010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- T4402C G5062T C8782T C17474T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_429080 CNA0013933
 2020-02-05 2020-04-23
 China Guangzhou/GZMU0019/2020
 C241T C3037T A23403G AAAAAAAAAAAA29892-

EPI_ISL_429082 CNA0013935
 2020-02-05 2020-04-23
 China Guangzhou/GZMU0023/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429083 CNA0013936
 2020-02-05 2020-04-23
 China Guangzhou/GZMU0024/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429084 CNA0013937
 2020-02-05 2020-04-23
 China Guangzhou/GZMU0025/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_444273 MT446312
 2020-02-05 2020-05-08
 China SARS-CoV-2/human/Guangzhou/IQTC05/2020
 AT1- G6819T T6996C C14235T C17373T G29527A AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_451329
 2020-02-05 2020-05-24
 China hCoV-19/China/SC-NC-069/2020
 C3717T A16824G C17373T T27645C

EPI_ISL_451338
 2020-02-05 2020-05-24
 China hCoV-19/China/SC-NJ-089/2020
 

EPI_ISL_452364
 2020-02-05 2020-05-27
 China hCoV-19/Beijing/DT-BJ04/2020
 G1397A T6552G T8022G T20891G G24812T A28305C G29742T

EPI_ISL_455462
 2020-02-05 2020-05-30
 China hCoV-19/Fuzhou/JX2012/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C1342T C8782T C16466T C18060T T28144C AAAAAAAAAAAA29892-

EPI_ISL_455464
 2020-02-05 2020-05-30
 China hCoV-19/Fuzhou/JX2009/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C1342T C8782T C18060T G23868C T28144C AAAAAAAAAAAA29892-

EPI_ISL_530002
 2020-02-05 2020-09-10
 Spain hCoV-19/Spain/MD-H12-71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T C14408T A20268G A23403G C25427T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

GWHAORJ01000001
 2020-02-05 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P5.1/2020
 T4008C T28031C

NMDC60013142-01
 2020-02-05 2020-04-25
 China ICDC-DT005
 ATTAAAGGTTTAT1- G25064A G26144T G28077T A29869T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_410536
 2020-02-06 2020-02-17
 Singapore hCoV-19/Singapore/5/2020
 AT1- C10138T G26144T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_411954 MT106052
 2020-02-06 2020-02-22
 United States 2019-nCoV/USA-CA7/2020
 C8782T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_412873
 2020-02-06 2020-02-28
 South Korea hCoV-19/South Korea/KCDC24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- T3086C C6255T C8782T G11083T G17122A T28144C A29871G AAAAAAAAAAAAAAAA29888-

EPI_ISL_413017
 2020-02-06 2020-03-03
 South Korea hCoV-19/South Korea/KUMC01/2020
 T4402C G5062T G26144T G26640T T26677C T28144C

EPI_ISL_413018
 2020-02-06 2020-03-03
 South Korea hCoV-19/South Korea/KUMC02/2020
 ATTAAAGGTTTA1- A2707G G26144T G26640T T26677C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416334
 2020-02-06 2020-03-20
 China hCoV-19/Shanghai/SH0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1555A C3037T A9238G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416907
 2020-02-06 2020-03-23
 Malaysia hCoV-19/Malaysia/MKAK-CL-2020-7554/2020
 ATTAAAGGTTTATA1- C1758T C10604T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422428
 2020-02-06 2020-04-10
 Singapore hCoV-19/Singapore/35/2020
 ATTA1- C5526Y C17074Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_428458 NMDC60013121-01
 2020-02-06 2020-04-21
 China hCoV-19/Guangdong/20SF2546/2020
 C8782T C17502T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_451340
 2020-02-06 2020-05-24
 China hCoV-19/China/SC-NJ-091/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- AA3174TT CT3177AG AA3180TT T13243C A18114G

EPI_ISL_454964
 2020-02-06 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-216/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C28093T C29303T

EPI_ISL_455461
 2020-02-06 2020-05-30
 China hCoV-19/Yichun/JX2391/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T76A T78G C482T C6543T C8782T T14565A C14567G G26467T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457726
 2020-02-06 2020-06-02
 Taiwan hCoV-19/Taiwan/TSGH-35/2020
 

EPI_ISL_457730
 2020-02-06 2020-06-02
 Taiwan hCoV-19/Taiwan/TSGH-36/2020
 G11083T G26144T -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACTAATAAAGAAACATACTGGAACATCCC

EPI_ISL_497964
 2020-02-06 2020-07-26
 South Korea hCoV-19/Korea/KCDC2063/2020
 A1- A26- T3086C C6255T C8782T G11083T G17122A T28144C

EPI_ISL_497965
 2020-02-06 2020-07-26
 South Korea hCoV-19/Korea/KCDC2064/2020
 A1- AC27- T3086C C6255T C8782T G11083T G17122A T28144C

EPI_ISL_530003
 2020-02-06 2020-09-10
 Spain hCoV-19/Spain/MD-H12-72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G A27307G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

GWHAORH01000001
 2020-02-06 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P4.1/2020
 C337T C3429T C6268T C18512T

EPI_ISL_411951 MT093571
 2020-02-07 2020-02-20
 Sweden SARS-CoV-2/human/SWE/01/2020
 G2717A A9274G CT13225GC A17376G T23952G G26144T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_412982 NMDC60013097-01
 2020-02-07 2020-03-02
 China BetaCoV/Wuhan/HBCDC-HB-06/2020
 ATTAAAGGTTTATAC1- G5657A C8782T A23403G A25725G T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_413748 CNA0013882
 2020-02-07 2020-03-09
 China Weifang/WFCDC0018/2020
 ATTAAAGGTTTATA1- C8782T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_413749 CNA0013881
 2020-02-07 2020-03-09
 China Weifang/WFCDC0019/2020
 ATTAAAGGTTT1- C8782T C14768T A17805T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_413750 CNA0013880
 2020-02-07 2020-03-09
 China Weifang/WFCDC0020/2020
 A1- C8782T T28144C AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_413751 CNA0013879
 2020-02-07 2020-03-09
 China Weifang/WFCDC0021/2020
 ATTAAAGGTTTA1- C8782T TTT27792- T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_414043
 2020-02-07 2020-03-11
 United Kingdom hCoV-19/England/200690306/2020
 ATG1605- C15237Y

EPI_ISL_416373
 2020-02-07 2020-03-20
 China hCoV-19/Shanghai/SH0070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G1397A G1805A G11083T T28688C C29670T G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416377
 2020-02-07 2020-03-20
 China hCoV-19/Shanghai/SH0074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T28144C C29095T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426173
 2020-02-07 2020-04-15
 South Korea hCoV-19/Korea/KCDC2009/2020
 ATTAAAGGTTTATAC1- C16T T4402C G5062T C8782T C11572T T28144C A29869G AAAAAAAAAAAAAAAA29888-

EPI_ISL_426629
 2020-02-07 2020-04-17
 Taiwan hCoV-19/Taiwan/TSGH-01/2020
 G11083T T19355G A24762T A24788T A24818T C25339T G26144T

EPI_ISL_429074 CNA0013927
 2020-02-07 2020-04-23
 China Guangzhou/GZMU0003/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429075 CNA0013928
 2020-02-07 2020-04-23
 China Guangzhou/GZMU0008/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429077 CNA0013930
 2020-02-07 2020-04-23
 China Guangzhou/GZMU0010/2020
 C21707T AAAAAAAAAAAA29892-

EPI_ISL_429078 CNA0013931
 2020-02-07 2020-04-23
 China Guangzhou/GZMU0013/2020
 C21707T T29867C

EPI_ISL_430740
 2020-02-07 2020-04-27
 China hCoV-19/Beijing/BJ710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C25460T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437616 MT447162
 2020-02-07 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI202205-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T G17814T T28144C C29095T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_450207 MT270110
 2020-02-07 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat10-ChVir1482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451356
 2020-02-07 2020-05-24
 China hCoV-19/China/SC-PHCC1-035/2020
 C829T G26144T

EPI_ISL_455385
 2020-02-07 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-193/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11050A AG14142- TG14865- C25624T

EPI_ISL_493421
 2020-02-07 2020-07-21
 Singapore hCoV-19/Singapore/661/2020
 ATTA1- C17373T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_530004
 2020-02-07 2020-09-10
 Spain hCoV-19/Spain/MD-H12-73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G A27307G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_410486
 2020-02-08 2020-02-14
 France hCoV-19/France/RA739/2020
 ATG1605- AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_412983 NMDC60013098-01
 2020-02-08 2020-03-02
 China BetaCoV/Tianmen/HBCDC-HB-07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTT1- A3175G G3179A C8782T C14422T C14585T G23405C T28144C C28315T T29680K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_413809 CNA0013893
 2020-02-08 2020-03-09
 China Weifang/WFCDC0029/2020
 ATTAAAGGTTTAT1- C8782T G18686T T28144C C29095T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_414041
 2020-02-08 2020-03-11
 United Kingdom hCoV-19/England/200690245/2020
 ATG1605- C28253Y

EPI_ISL_414042
 2020-02-08 2020-03-11
 United Kingdom hCoV-19/England/200690300/2020
 ATG1605- A11002M

EPI_ISL_414044
 2020-02-08 2020-03-11
 United Kingdom hCoV-19/England/200690756/2020
 ATG1605- C6638Y G13507R

EPI_ISL_416363
 2020-02-08 2020-03-20
 China hCoV-19/Shanghai/SH0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C15324T C29303T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416382
 2020-02-08 2020-03-20
 China hCoV-19/Shanghai/SH0080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G1397A C2570T C9333T T11032C G11083T C12073T C17502T T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416415 MT450924
 2020-02-08 2020-03-20
 Australia SARS-CoV-2/human/AUS/VIC07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C10038T T28144C G28878A G29742A

EPI_ISL_417187
 2020-02-08 2020-03-24
 China hCoV-19/Hong Kong/HKPU29_0102/2020
 C9962T T13929C C14724T T21584G G26144T

EPI_ISL_417188
 2020-02-08 2020-03-24
 China hCoV-19/Hong Kong/HKPU30_2901/2020
 C9962T T13929C C14724T T21584G G26144T

EPI_ISL_421258
 2020-02-08 2020-04-07
 China hCoV-19/Shangrao/JX1974/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C7938G C11750T C21707T AAAAAAAAAAAA29892-

EPI_ISL_429089 CNA0013941
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0037/2020
 C241T C3037T A23403G AAAAAAAAAAAA29892-

EPI_ISL_429090 CNA0013942
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0039/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429091 CNA0013943
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0041/2020
 C8782T T28144C A29882C AAAAAAAAAAAA29892-

EPI_ISL_429092 CNA0013944
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0045/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429093 CNA0013945
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0046/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_429094 CNA0013946
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0049/2020
 C8782T C26447G T28144C T28250G C29095T

EPI_ISL_429095 CNA0013947
 2020-02-08 2020-04-23
 China Guangzhou/GZMU0050/2020
 ATT1GAC G8A TT10CC C8782T C26447G T28144C T28250G C29095T

EPI_ISL_430724
 2020-02-08 2020-04-27
 China hCoV-19/Beijing/BJ752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C14198T C16293T T28144C C29095T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_435134
 2020-02-08 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L4280/2020
 C29303T

EPI_ISL_450208 MT270111
 2020-02-08 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat14-ChVir1483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451076 EPI_ISL_451377
 2020-02-08 2020-05-23
 China hCoV-19/Sichuan/SC-WCH2-006/2020
 T28144C C29640T G29742A

EPI_ISL_451349
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-PHCC1-028/2020
 CC18109-T

EPI_ISL_451350
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-PHCC1-029/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G1820A C27247T A27300-

EPI_ISL_451352
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-PHCC1-031/2020
 C683T G16197T G16325- TG18987- T21836C

EPI_ISL_451367
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-PHCC2-047/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C CC18109-T

EPI_ISL_451369
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-PHCC2-049/2020
 G1820A G8013A C18267T C21711T TTT21980- GCTTTA22289- C23741T G28845A G28919A

EPI_ISL_451375
 2020-02-08 2020-05-24
 China hCoV-19/China/SC-WCH1-002/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- AAGATTTTC729- T13243C CC18109-T

EPI_ISL_452359
 2020-02-08 2020-05-27
 China hCoV-19/Beijing/DT-BJ02/2020
 G11405C T21146C G26144T

EPI_ISL_455791
 2020-02-08 2020-06-01
 Malaysia hCoV-19/Malaysia/IMR_WC413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C1758T C10604T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_457733
 2020-02-08 2020-06-02
 Taiwan hCoV-19/Taiwan/TSGH-37/2020
 A1226C C14573T G18106T C29199T T29360G -29899AACCCCCAAAAAAAAAAAAAAAAAAACAACAAATTAAAAACAAAAAAAAAAAAAAATAAAAAATATAAAGGAGATAAAAATAATATT -29904CA

EPI_ISL_530005
 2020-02-08 2020-09-10
 Spain hCoV-19/Spain/MD-H12-75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6040T C8683T C8782T G12661A C15738T C26088T G26152A T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_410537
 2020-02-09 2020-02-17
 Singapore hCoV-19/Singapore/6/2020
 ATTAAAGGTTTATACC1- G27147C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_412116
 2020-02-09 2020-02-24
 United Kingdom hCoV-19/England/09c/2020
 A2480G C2558T C14805T G26144T

EPI_ISL_413864 NMDC60013031-01
 2020-02-09 2020-03-09
 China hCoV-19/Guangdong/GD2020246-P0028/2020
 C15324T C29303T

EPI_ISL_414527
 2020-02-09 2020-03-13
 China hCoV-19/Hong Kong/VM20002493-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T13929C A23717G G26144T G29239T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_416380
 2020-02-09 2020-03-20
 China hCoV-19/Shanghai/SH0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G2293T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416393
 2020-02-09 2020-03-20
 China hCoV-19/Shanghai/SH0101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G2293T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416404
 2020-02-09 2020-03-20
 China hCoV-19/Shanghai/SH0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_417185
 2020-02-09 2020-03-24
 China hCoV-19/Hong Kong/HKPU28_3001/2020
 G26144T

EPI_ISL_417193
 2020-02-09 2020-03-24
 China hCoV-19/Hong Kong/HKPU32_0402/2020
 C9962T T13929C C14724T T21584G G21974T G26144T

EPI_ISL_417197
 2020-02-09 2020-03-24
 China hCoV-19/Hong Kong/HKPU34_3001/2020
 C9962T T13929C T21584G G21974T G26144T

EPI_ISL_418815
 2020-02-09 2020-03-31
 China hCoV-19/Hong Kong/HKPU36-0702/2020
 C9962T C12756T T13929C C14724T T21584G G26144T

EPI_ISL_426182
 2020-02-09 2020-04-15
 South Korea hCoV-19/Korea/KCDC2012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- T490A C1101T G3119A C8782T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_451348
 2020-02-09 2020-05-24
 China hCoV-19/China/SC-PHCC1-027/2020
 T3086C C8782T G11083T G17122A T17407C C21711T C25721T G27261A G27967T T28144C

EPI_ISL_451354
 2020-02-09 2020-05-24
 China hCoV-19/China/SC-PHCC1-033/2020
 T3086C C8782T G11083T T15393G G17122A G27261A G27967T T28144C

EPI_ISL_451371
 2020-02-09 2020-05-24
 China hCoV-19/China/SC-PHCC2-051/2020
 C8782T C19637T T28144C

EPI_ISL_454980
 2020-02-09 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-239/2020
 

EPI_ISL_455460
 2020-02-09 2020-05-30
 China hCoV-19/Yichun/JX2325/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T C25046T T28144C C29095T AAAAAAAAAAAA29892-

EPI_ISL_455792
 2020-02-09 2020-06-01
 Malaysia hCoV-19/Malaysia/IMR_WC458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C1758T C10604T ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_462293
 2020-02-09 2020-06-08
 Singapore hCoV-19/Singapore/175/2020
 T3412W C9474Y C9603Y G17847R T18339Y C20099Y C21707T A21949M AAAAAAAAAAAA29892-

EPI_ISL_464168
 2020-02-09 2020-06-11
 United Kingdom hCoV-19/England/20072030304/2020
 A2480G C2558T G11083T C14805T G26144T A29478R

EPI_ISL_482680
 2020-02-09 2020-07-05
 Singapore hCoV-19/Singapore/320nan/2020
 G27147C

EPI_ISL_489998
 2020-02-09 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/509/2020
 C241T C829T C3037T G7067A C14408T C18264T C18877T A23403G G25563T C26735T

EPI_ISL_497966
 2020-02-09 2020-07-26
 South Korea hCoV-19/Korea/KCDC2065/2020
 A1G TA3- T490A C1101T G3119A G3661A C8782T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAA29889-

EPI_ISL_530006
 2020-02-09 2020-09-10
 Spain hCoV-19/Spain/MD-H12-76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9603T G11083T G26144T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

GWHAORB01000001
 2020-02-09 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P1.1/2020
 G26144T

MT755885
 2020-02-09 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/509/2020
 C241T C829T C3037T G7067A C14408T C18264T C18877T A23403G G25563T C26735T

NMDC60013280
 2020-02-09 2020-06-01
 China hCoV-19/Guangzhou/ID004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G11837T T28144C C29095T C29870A

EPI_ISL_411955 MT106053
 2020-02-10 2020-02-22
 United States 2019-nCoV/USA-CA8/2020
 A24325G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_412968 LC528232
 2020-02-10 2020-02-26
 Japan SARS-CoV-2/Hu/DP/Kng/19-020
 A1TTGCTTA T3G GG7AT TA13AT CT16- G11083T AA29884TT AAAA29888TTTT AA29893GT AAAAAAAA29896GTGC

EPI_ISL_412969 LC528233
 2020-02-10 2020-02-26
 Japan SARS-CoV-2/Hu/DP/Kng/19-027
 ATT1CCC G7ATGCTGTT G11083T C29635T A29876C AAA29878GTG A29883C AAAA29886TGCT AAA29891GGG AAAAAAAAA29895-

EPI_ISL_413753 CNA0013878
 2020-02-10 2020-03-09
 China Weifang/WFCDC0024/2020
 ATTAAAGGTTTA1- A5608G C7164T CTTTACTTG22281- AAAAAAAAA29895-

EPI_ISL_414528
 2020-02-10 2020-03-13
 China hCoV-19/Hong Kong/VM20002507-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T13929C G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418992
 2020-02-10 2020-04-01
 Singapore hCoV-19/Singapore/17/2020
 T21524G C21575T G26144T G29737S AAAAAAAAAAAA29892-

EPI_ISL_419214
 2020-02-10 2020-04-01
 China hCoV-19/Hong Kong/HKPU39-3001/2020
 C9962T T13929C C14724T T21584G G26144T

EPI_ISL_419215
 2020-02-10 2020-04-01
 China hCoV-19/Hong Kong/HKPU40-2801/2020
 C9962T T13929C C14724T T21584G G26144T

EPI_ISL_419216
 2020-02-10 2020-04-01
 China hCoV-19/Hong Kong/HKPU41-0802/2020
 C9962T T13929C C14724T T21584G G21974T G26144T

EPI_ISL_430741
 2020-02-10 2020-04-27
 China hCoV-19/Beijing/BJ782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C14198T C16293T T28144C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451388
 2020-02-10 2020-05-24
 China hCoV-19/China/SC-WCH4-286/2020
 

EPI_ISL_454930
 2020-02-10 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-163/2020
 T18765C T25382C

EPI_ISL_454931
 2020-02-10 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-164/2020
 C8529T C17690T T25382C C25611A

EPI_ISL_455374
 2020-02-10 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-162/2020
 C8529T ATA17609- G18412- C22482T

EPI_ISL_455465
 2020-02-10 2020-05-30
 China hCoV-19/Fuzhou/JX2019/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C2570T A24454G G26144T AAAAAAAAAAAA29892-

EPI_ISL_489999
 2020-02-10 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/518/2020
 C241T C3037T A3790G C14408T C15342T C18877T A23403G G25543T G25563T C26735T

EPI_ISL_490000
 2020-02-10 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/523/2020
 C241T C829T C3037T G7067A G12793T C14408T C18264T C18877T A23403G G25563T C26735T

EPI_ISL_530007
 2020-02-10 2020-09-10
 Spain hCoV-19/Spain/MD-H12-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5339T G7954T G11365T T13447G C14408T C22444T A23403G GGG28881AAC ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755886
 2020-02-10 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/518/2020
 C241T C3037T A3790G C14408T C15342T C18877T A23403G G25543T G25563T C26735T

MT755887
 2020-02-10 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/523/2020
 C241T C829T C3037T G7067A G12793T C14408T C18264T C18877T A23403G G25563T C26735T

EPI_ISL_411956 MT106054
 2020-02-11 2020-02-22
 United States 2019-nCoV/USA-TX1/2020
 C8782T T18603C T18975A A19175C C27925T T28144C C29095T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416402
 2020-02-11 2020-03-20
 China hCoV-19/Shanghai/SH0115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C289T C8782T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416429
 2020-02-11 2020-03-21
 Vietnam hCoV-19/Vietnam/CM99/2020
 C8782T A9259G G21142T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_419222
 2020-02-11 2020-04-01
 China hCoV-19/Hong Kong/HKPU48-0202/2020
 A22474G G23088A G23090T G26144T

EPI_ISL_451342
 2020-02-11 2020-05-24
 China hCoV-19/China/SC-NJ-093/2020
 C15720T CT27874TC CACG27879TC C27883T T28144C

EPI_ISL_452358
 2020-02-11 2020-05-27
 China hCoV-19/Beijing/DT-BJ01/2020
 

EPI_ISL_452361
 2020-02-11 2020-05-27
 China hCoV-19/Beijing/DT-BJ03/2020
 T8022G G21452A T28144C

EPI_ISL_454932
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-166/2020
 T22777C G22793T G22857T

EPI_ISL_454933
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-167/2020
 

EPI_ISL_454934
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-168/2020
 C8529T

EPI_ISL_454935
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-169/2020
 G26239A

EPI_ISL_454936
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-170/2020
 G26558T

EPI_ISL_454937
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-171/2020
 C22482T

EPI_ISL_455011
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-279/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C3768T ATA3951- T13243C C16045T

EPI_ISL_455375
 2020-02-11 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-165/2020
 G18412- T25382C

EPI_ISL_457687 CNA0013981
 2020-02-11 2020-06-02
 China Guangzhou/GZMU0074/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457688 CNA0013982
 2020-02-11 2020-06-02
 China Guangzhou/GZMU0075/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457689 CNA0013983
 2020-02-11 2020-06-02
 China Guangzhou/GZMU0077/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457690 CNA0013984
 2020-02-11 2020-06-02
 China Guangzhou/GZMU0078/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457691 CNA0013985
 2020-02-11 2020-06-02
 China Guangzhou/GZMU0079/2020
 G6819T C17373T C28854T G29527A A29878C AAAAAAAAAAAA29892-

EPI_ISL_530008
 2020-02-11 2020-09-10
 Spain hCoV-19/Spain/MD-H12-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11071C G11083T C24616T G26144T C29659T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_414569
 2020-02-12 2020-03-13
 China hCoV-19/Hong Kong/VM20002582-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T13929C G25500A G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_426187
 2020-02-12 2020-04-15
 South Korea hCoV-19/Korea/KCDC2014/2020
 ATTAAAGGTTTATACC1- T490A C1101T G3119A C8782T C24034T T26729C C26873T G28077C T28144C A29869G AAAAAAAAAAAAAAAA29888-

EPI_ISL_430444
 2020-02-12 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC627/2020
 ATTAAAGGTTTA1- C1758T C10604T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_451298
 2020-02-12 2020-05-24
 Italy hCoV-19/Italy/INMI1-B1/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A2269T G11083T G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_451355
 2020-02-12 2020-05-24
 China hCoV-19/China/SC-PHCC1-034/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T28144C

EPI_ISL_451364
 2020-02-12 2020-05-24
 China hCoV-19/China/SC-PHCC2-044/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- TTAAAAT1362- C13019T T13243C C26333T C26340T

EPI_ISL_455386
 2020-02-12 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-198/2020
 TG14865-

EPI_ISL_455467
 2020-02-12 2020-05-30
 China hCoV-19/Yichun/JX2424/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C6543T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_530009
 2020-02-12 2020-09-10
 Spain hCoV-19/Spain/MD-H12-80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6726T G10072T C14408T C19160T A20268G A23403G G25630T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_414380
 2020-02-13 2020-03-12
 Singapore hCoV-19/Singapore/14/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_416399
 2020-02-13 2020-03-20
 China hCoV-19/Shanghai/SH0110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C7239T T8916G C16887T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_419000
 2020-02-13 2020-04-01
 Singapore hCoV-19/Singapore/21/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_419224
 2020-02-13 2020-04-01
 China hCoV-19/Hong Kong/HKPU52-3101/2020
 G25500A G26144T

EPI_ISL_419226
 2020-02-13 2020-04-01
 China hCoV-19/Hong Kong/HKPU54-0302/2020
 C203T C1404T A4426G C15273T A22429G G26144T

EPI_ISL_451362
 2020-02-13 2020-05-24
 China hCoV-19/China/SC-PHCC2-042/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- A1430G C6318T G16535T CC18109-T TG18987-

EPI_ISL_451391
 2020-02-13 2020-05-24
 China hCoV-19/China/SC-WCH4-289/2020
 A16824G

EPI_ISL_454417 MT510728
 2020-02-13 2020-05-25
 China SARS-CoV-2/human/CHN/SARS-CoV-2-MZ01 Meizhou_MZ01/2020
 C3817T C8782T T15983A G25598T T28144C

EPI_ISL_454999
 2020-02-13 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-264/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11897T T13243C T14684C

EPI_ISL_464169
 2020-02-13 2020-06-11
 United Kingdom hCoV-19/England/20078003804/2020
 A2480G C2558T G11083T C14805T G26144T A29478R

EPI_ISL_479850
 2020-02-13 2020-07-01
 Japan hCoV-19/Japan/PG-0114/2020
 ATTAAAGGTTT1- T8323C G11083T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490001
 2020-02-13 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/545/2020
 C241T C3037T C14408T C18877T C22444T A23403G A23503G G25563T C26735T

EPI_ISL_490002
 2020-02-13 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/553/2020
 C241T G713T C897T C3037T T7386C A7487G C14408T C18555T C18877T A23403G G25563T C26735T

EPI_ISL_530010
 2020-02-13 2020-09-10
 Spain hCoV-19/Spain/MD-H12-81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10747T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755888
 2020-02-13 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/545/2020
 C241T C3037T C14408T C18877T C22444T A23403G A23503G G25563T C26735T

MT755889
 2020-02-13 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/553/2020
 C241T G713T C897T C3037T T7386C A7487G C14408T C18555T C18877T A23403G G25563T C26735T

EPI_ISL_416394
 2020-02-14 2020-03-20
 China hCoV-19/Shanghai/SH0102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G2293T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_418998
 2020-02-14 2020-04-01
 Singapore hCoV-19/Singapore/14Clin/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_420889 LC534418
 2020-02-14 2020-03-19
 Japan SARS-CoV-2/Hu/DP/Kng/19-031
 ATTA1- C7105T G11083T G15418T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451368
 2020-02-14 2020-05-24
 China hCoV-19/China/SC-PHCC2-048/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C8782T C19637T T28144C

EPI_ISL_455000
 2020-02-14 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-265/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11897T T13243C T14684C

EPI_ISL_457692 CNA0013986
 2020-02-14 2020-06-02
 China Guangzhou/GZMU0081/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457693 CNA0013987
 2020-02-14 2020-06-02
 China Guangzhou/GZMU0083/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_530011
 2020-02-14 2020-09-10
 Spain hCoV-19/Spain/MD-H12-82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7945T C14408T A20268G A23403G G26918T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_416406
 2020-02-15 2020-03-20
 China hCoV-19/Shanghai/SH0125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C5869T C9474T G11083T C17502T G19518T C25207T T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416407
 2020-02-15 2020-03-20
 China hCoV-19/Shanghai/SH0126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1397A C5869T G11083T C17502T G19518T C25207T T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416565 LC570961
 2020-02-15 2020-03-23
 Japan DP0005
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T C18656T C29635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416566 LC570962
 2020-02-15 2020-03-23
 Japan DP0027
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T A12964G A29324G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416567 LC570963
 2020-02-15 2020-03-23
 Japan DP0037
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T G11410A G15907A TA29564- TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_416569 LC570967
 2020-02-15 2020-03-23
 Japan DP0059
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416570 LC570968
 2020-02-15 2020-03-23
 Japan DP0065
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C254T G11083T G22104T G29736T G29751C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416571 LC570969
 2020-02-15 2020-03-23
 Japan DP0077
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G4127A G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416572 LC570970
 2020-02-15 2020-03-23
 Japan DP0078
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416573 LC570971
 2020-02-15 2020-03-23
 Japan DP0104
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416574 LC570972
 2020-02-15 2020-03-23
 Japan DP0107
 ATT1- G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416575 LC570973
 2020-02-15 2020-03-23
 Japan DP0121
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416576 LC570974
 2020-02-15 2020-03-23
 Japan DP0133
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416577 LC570975
 2020-02-15 2020-03-23
 Japan DP0134
 ATT1- G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416578 LC570976
 2020-02-15 2020-03-23
 Japan DP0152
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C9474T G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416579 LC570977
 2020-02-15 2020-03-23
 Japan DP0158
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- T8004C G11083T A21917G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416580 LC570978
 2020-02-15 2020-03-23
 Japan DP0184
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416581 LC570979
 2020-02-15 2020-03-23
 Japan DP0190
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- T8323C G11083T C25658T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416582 LC570980
 2020-02-15 2020-03-23
 Japan DP0191
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- A3854G G11083T C29635T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416583 LC570981
 2020-02-15 2020-03-23
 Japan DP0196
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C5284T G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416584 LC570982
 2020-02-15 2020-03-23
 Japan DP0200
 ATT1- A3132G G11083T G11410A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_451393
 2020-02-15 2020-05-24
 China hCoV-19/China/SC-WCH4-291/2020
 A16824G

EPI_ISL_454418 MT510727
 2020-02-15 2020-05-25
 China SARS-CoV-2/human/CHN/SARS-CoV-2-MZ02 Meizhou_MZ02/2020
 G2203T C2701A C3817T C8782T T15983A T28144C

EPI_ISL_455003
 2020-02-15 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-268/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T4873C A4992C C11897T T13243C T14684C A26098T

EPI_ISL_479824
 2020-02-15 2020-07-01
 Japan hCoV-19/Japan/PG-0066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480042
 2020-02-15 2020-07-01
 Japan hCoV-19/Japan/PG-0372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_530012
 2020-02-15 2020-09-10
 Spain hCoV-19/Spain/MD-H12-83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7945T C14408T A20268G G21296A A23403G G26918T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_416585 LC570983
 2020-02-16 2020-03-23
 Japan DP0236
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C335T G11083T G29736T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416586 LC570984
 2020-02-16 2020-03-23
 Japan DP0274
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416587 LC570985
 2020-02-16 2020-03-23
 Japan DP0278
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A15246G C29635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416588 LC570986
 2020-02-16 2020-03-23
 Japan DP0286
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- TGGTCATGTTATGGT508- G11083T C29635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416589 LC570987
 2020-02-16 2020-03-23
 Japan DP0287
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T G11310T A24819G G29674T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416590 LC570988
 2020-02-16 2020-03-23
 Japan DP0289
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416591 LC570989
 2020-02-16 2020-03-23
 Japan DP0290
 ATT1- G11083T T24436C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416592 LC570990
 2020-02-16 2020-03-23
 Japan DP0294
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416593 LC570991
 2020-02-16 2020-03-23
 Japan DP0311
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4127A G11083T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_416594 LC570992
 2020-02-16 2020-03-23
 Japan DP0319
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416595 LC570993
 2020-02-16 2020-03-23
 Japan DP0328
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416596 LC570994
 2020-02-16 2020-03-23
 Japan DP0344
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416597 LC570995
 2020-02-16 2020-03-23
 Japan DP0346
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_416598 LC570996
 2020-02-16 2020-03-23
 Japan DP0357
 ATTAAAGG1- G11083T C29635T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_416599 LC570997
 2020-02-16 2020-03-23
 Japan DP0361
 ATTAAAGGTTTATACCTTC1- G11083T G11410A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416600 LC570998
 2020-02-16 2020-03-23
 Japan DP0438
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416601 LC570999
 2020-02-16 2020-03-23
 Japan DP0457
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G4201T G11083T C25000T G25244T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_416603 LC571002
 2020-02-16 2020-03-23
 Japan DP0464
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T C18656T C29635T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416604 LC571003
 2020-02-16 2020-03-23
 Japan DP0476
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T C21575T C29592T C29635T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_416605 LC571004
 2020-02-16 2020-03-23
 Japan DP0481
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- T973C G9141A G11083T G26062T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_416606 LC571005
 2020-02-16 2020-03-23
 Japan DP0482
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_422429
 2020-02-16 2020-04-10
 Singapore hCoV-19/Singapore/36/2020
 ATTAAA1- G27147C T29244K CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_428822
 2020-02-16 2020-04-22
 Singapore hCoV-19/Singapore/43/2020
 ATTAAA1- C8782T G14414K ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- G28378K AAAAAAAAAAAA29892-

EPI_ISL_454749
 2020-02-16 2020-05-29
 Japan hCoV-19/Japan/DP0321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464175
 2020-02-16 2020-06-11
 United Kingdom hCoV-19/England/20080000104/2020
 A2480G C2558T G11083T C14805T A23999G G26144T

EPI_ISL_466615
 2020-02-16 2020-06-11
 United Kingdom hCoV-19/England/20168037604/2020
 C241T C3037T C14408T A23223G A23403G C25587T T26483C GGG28881AAC

EPI_ISL_477170
 2020-02-16 2020-06-29
 Singapore hCoV-19/Singapore/470/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_490003
 2020-02-16 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/562/2020
 C241T T586A C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28333T C28854T

EPI_ISL_530013
 2020-02-16 2020-09-10
 Spain hCoV-19/Spain/MD-H12-84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1426T C3037T C6794G C14408T A20268G A23403G T25663C G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_538435
 2020-02-16 2020-09-17
 Singapore hCoV-19/Singapore/36nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G27147C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT755890
 2020-02-16 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/562/2020
 C241T T586A C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28333T C28854T

EPI_ISL_413606 MT159717
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-1/2020
 C3099T G11083T G28378T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413612 MT159705
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-7/2020
 C3738T G11083T G11410A C26326T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413613 MT159706
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-8/2020
 C9474T G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413614 MT159710
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-9/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413615 MT159707
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-10/2020
 G3259T G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413616 MT159708
 2020-02-17 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-11/2020
 C10036T G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414378
 2020-02-17 2020-03-12
 Singapore hCoV-19/Singapore/12/2020
 C8782T T24011C C25568A ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- C29741T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_414483 MT184911
 2020-02-17 2020-03-12
 United States 2019-nCoV/USA-CruiseA-24/2020
 C1063Y C3099T C10083Y C10507T G11083T G15193S G15586K C15810Y C28253Y G28378T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414484 MT184912
 2020-02-17 2020-03-12
 United States 2019-nCoV/USA-CruiseA-25/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416607 LC571006
 2020-02-17 2020-03-23
 Japan DP0543
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A5845T G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416608 LC571007
 2020-02-17 2020-03-23
 Japan DP0544
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A5845T G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416609 LC571008
 2020-02-17 2020-03-23
 Japan DP0568
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416610 LC571009
 2020-02-17 2020-03-23
 Japan DP0588
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T C29635T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416611 LC571010
 2020-02-17 2020-03-23
 Japan DP0644
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416612 LC571011
 2020-02-17 2020-03-23
 Japan DP0645
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T G27282A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416613 LC571012
 2020-02-17 2020-03-23
 Japan DP0654
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T C18656T C20762T C24797A C29463T C29635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416614 LC571013
 2020-02-17 2020-03-23
 Japan DP0687
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T G20709T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416617 LC571019
 2020-02-17 2020-03-23
 Japan DP0699
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_416619 LC571022
 2020-02-17 2020-03-23
 Japan DP0703
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G11083T C18656T C29635T TGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29691-

EPI_ISL_416620 LC571023
 2020-02-17 2020-03-23
 Japan DP0724
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T G27214T AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_416621 LC571024
 2020-02-17 2020-03-23
 Japan DP0743
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T G29227T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_416622 LC571025
 2020-02-17 2020-03-23
 Japan DP0752
 ATTA1- C4158T G11083T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_416624 LC571030
 2020-02-17 2020-03-23
 Japan DP0764
 ATT1- G11083T C18656T C29635T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416625 LC571031
 2020-02-17 2020-03-23
 Japan DP0765
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- C9223T G11083T C18656T C29635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416627 LC571034
 2020-02-17 2020-03-23
 Japan DP0785
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G11083T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_416628 LC571035
 2020-02-17 2020-03-23
 Japan DP0786
 ATTAAAGGTTTATACCTTCCCAGGTA1- G11083T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_416629 LC571036
 2020-02-17 2020-03-23
 Japan DP0802
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416630 LC571037
 2020-02-17 2020-03-23
 Japan DP0803
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- G4162T G11083T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_416631 LC571038
 2020-02-17 2020-03-23
 Japan DP0804
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_416632 LC571039
 2020-02-17 2020-03-23
 Japan DP0827
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416633 LC571040
 2020-02-17 2020-03-23
 Japan DP0880
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T C27804T AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_416634 LC571041
 2020-02-17 2020-03-23
 Japan DP0890
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G11083T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419228
 2020-02-17 2020-04-01
 China hCoV-19/Hong Kong/HKPU60-0802/2020
 A5536G

EPI_ISL_428462 NMDC60013125-01
 2020-02-17 2020-04-21
 China hCoV-19/Guangdong/20SF4047/2020
 C8782T C17502T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_454974
 2020-02-17 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-231/2020
 T490A T26729C G28077C T28144C

EPI_ISL_455002
 2020-02-17 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-267/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C

EPI_ISL_455006
 2020-02-17 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-271/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C

EPI_ISL_457694 CNA0013988
 2020-02-17 2020-06-02
 China Guangzhou/GZMU0092/2020
 G6819T C17373T C28854T G29527A AAAAAAAAAAAA29892-

EPI_ISL_457695 CNA0013989
 2020-02-17 2020-06-02
 China Guangzhou/GZMU0095/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_479851
 2020-02-17 2020-07-01
 Japan hCoV-19/Japan/PG-0115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479863
 2020-02-17 2020-07-01
 Japan hCoV-19/Japan/PG-0140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A3132G G11083T G11410A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480030
 2020-02-17 2020-07-01
 Japan hCoV-19/Japan/PG-0359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- G11083T C18656T C29635T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_490004
 2020-02-17 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/578/2020
 C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C27527T C28854T C29421T

EPI_ISL_497961
 2020-02-17 2020-07-26
 South Korea hCoV-19/Korea/KCDC2060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCA1- G5572T G11083T C14805T G26144T A29869G AAAAAAAAAAAAAAAA29888-

EPI_ISL_530014
 2020-02-17 2020-09-10
 Spain hCoV-19/Spain/MD-H12-85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T C14408T A20268G A23403G C29218T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755891
 2020-02-17 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/578/2020
 C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C27527T C28854T C29421T

EPI_ISL_413607 MT159718
 2020-02-18 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-2/2020
 G11083T C28409T G29736T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413608 MT159719
 2020-02-18 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-3/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413620 MT159713
 2020-02-18 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-15/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413621 MT159714
 2020-02-18 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-16/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414379
 2020-02-18 2020-03-12
 Singapore hCoV-19/Singapore/13/2020
 A1- C8782T T17723C ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- C28868T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_414479 MT184907
 2020-02-18 2020-03-12
 United States SARS-CoV-2/human/USA/CruiseA-19/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414482 MT184910
 2020-02-18 2020-03-12
 United States 2019-nCoV/USA-CruiseA-23/2020
 C254T C1911Y T9157C G11083T G22104T G29736T G29751C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427810
 2020-02-18 2020-04-19
 South Korea hCoV-19/Korea/KCDC2016/2020
 ATTAAAGGTT1- G174T A2406G G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427811
 2020-02-18 2020-04-19
 South Korea hCoV-19/Korea/KCDC2017/2020
 ATTA1- G5572T G11083T C14805T T15399C G26144T

EPI_ISL_427813
 2020-02-18 2020-04-19
 South Korea hCoV-19/Korea/KCDC2019/2020
 ATTA1- G5572T G11083T C14805T G26144T

EPI_ISL_471425
 2020-02-18 2020-06-21
 South Korea hCoV-19/Korea/KCDC2020/2020
 G5572T G11083T C14805T G26144T

EPI_ISL_471426
 2020-02-18 2020-06-21
 South Korea hCoV-19/Korea/KCDC2021/2020
 C3411T G5572T G11083T C13551T C14805T G26144T

EPI_ISL_471438
 2020-02-18 2020-06-21
 South Korea hCoV-19/Korea/KCDC2022/2020
 A1- G5572T G11083T C14805T G26144T

EPI_ISL_479797
 2020-02-18 2020-07-01
 Japan hCoV-19/Japan/PG-0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C6151T C11752T C12708T C23191T G24410T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_479798
 2020-02-18 2020-07-01
 Japan hCoV-19/Japan/PG-0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C6151T C11752T C12708T C23191T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490005
 2020-02-18 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/583/2020
 C241T C3037T A9102G C14408T C18877T A23403G G25563T C26735T C29250T

EPI_ISL_490006
 2020-02-18 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/596/2020
 C241T C3037T C14408T C18877T C22444T A23403G A23503G G25563T C26735T

EPI_ISL_493414
 2020-02-18 2020-07-21
 Singapore hCoV-19/Singapore/654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- G27147C G29798T AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_530015
 2020-02-18 2020-09-10
 Spain hCoV-19/Spain/MD-H12-87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2724T C3037T A4307G C14408T C18117T A20268G A23403G C28854T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT755892
 2020-02-18 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/583/2020
 C241T C3037T A9102G C14408T C18877T A23403G G25563T C26735T C29250T

MT755893
 2020-02-18 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/596/2020
 C241T C3037T C14408T C18877T C22444T A23403G A23503G G25563T C26735T

EPI_ISL_419231
 2020-02-19 2020-04-01
 China hCoV-19/Hong Kong/HKPU63-1402/2020
 G22309T G22936T

EPI_ISL_419232
 2020-02-19 2020-04-01
 China hCoV-19/Hong Kong/HKPU64-1202/2020
 G1149T G5539A C9962T G11083T C14724T T21584G G26144T

EPI_ISL_427812
 2020-02-19 2020-04-19
 South Korea hCoV-19/Korea/KCDC2018/2020
 ATTAAAGGTTT1- T4402C G5062T C8782T T28144C

EPI_ISL_451318
 2020-02-19 2020-05-24
 China hCoV-19/China/SC-LZ-079/2020
 C18060T T28144C

EPI_ISL_454952
 2020-02-19 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-200/2020
 T12706A T28144C

EPI_ISL_471439
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2023/2020
 ATTAA1- T3142C G5572T G11083T C14805T G26144T

EPI_ISL_471440
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2024/2020
 A1- T921A G5572T G11083T C14805T C15216T G26144T AAAAAAAA29896-

EPI_ISL_471441
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2025/2020
 ATTAAAGGTTTA1- T693C G5572T G11083T C14805T G26144T

EPI_ISL_471442
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- G5572T G11083T C14805T G26144T

EPI_ISL_471443
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2027/2020
 G5572T G11083T C14805T G26144T G29717A

EPI_ISL_471446
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- G5572T G11083T C14805T C21575T G26144T

EPI_ISL_471447
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2041/2020
 ATTAAAGGTTT1- G5572T G11083T C14805T G26144T

EPI_ISL_471448
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2042/2020
 AT1- G5572T C11074T G11083T C12049T C14805T A17457R T25219C G26144T

EPI_ISL_471449
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2043/2020
 G5572T G11083T C14805T G26144T

EPI_ISL_471450
 2020-02-19 2020-06-21
 South Korea hCoV-19/Korea/KCDC2044/2020
 ATTA1- G5572T C11074T G11083T C12049T C14805T G26144T

EPI_ISL_476795
 2020-02-19 2020-06-26
 Singapore hCoV-19/Singapore/469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480031
 2020-02-19 2020-07-01
 Japan hCoV-19/Japan/PG-0361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G9141A G11083T G26062T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_497960
 2020-02-19 2020-07-26
 South Korea hCoV-19/Korea/KCDC2039/2020
 G5572T G11083T C14805T G26144T

EPI_ISL_497968
 2020-02-19 2020-07-26
 South Korea hCoV-19/Korea/KCDC2067/2020
 G5572T G11083T C14805T G21778A T22928C C23917T G26144T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_497969
 2020-02-19 2020-07-26
 South Korea hCoV-19/Korea/KCDC2068/2020
 ATTAAAGGTTT1- T3142C G5572T G11083T C14805T G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_412973
 2020-02-20 2020-03-01
 Italy hCoV-19/Italy/CDG1/2020
 C241T C3037T C14408T A23403G

EPI_ISL_413456 MT598633
 2020-02-20 2020-03-05
 United States SARS-CoV-2/human/USA/WA-S2/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_413459
 2020-02-20 2020-03-05
 Japan hCoV-19/Japan/TK-20-31-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAG1- G11083T C29635T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_413617 MT159709
 2020-02-20 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-12/2020
 G11083T C29635T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413618 MT159711
 2020-02-20 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-13/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418325
 2020-02-20 2020-02-20
 Canada hCoV-19/Canada/ON_PHL5472/2020
 A1- G1397A A2832G G11083T T28688C G29742T AGTGTAC29756- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451347
 2020-02-20 2020-05-24
 China hCoV-19/China/SC-PHCC1-026/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- TGCAGCTTTTGCTACTGCTCAAGAAGCTTATGAGCAGGCTGTTGCTAATGGTGATTCTGAAGTTGTTCTTAAAAAGTT12127- C23895A T28144C G28878A

EPI_ISL_454965
 2020-02-20 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-220/2020
 C8055T C8266T C18329T C22006T C22858T C23298A

EPI_ISL_457696 CNA0013990
 2020-02-20 2020-06-02
 China Guangzhou/GZMU0099/2020
 C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457697 CNA0013991
 2020-02-20 2020-06-02
 China Guangzhou/GZMU0101/2020
 T3160C G6819T C17373T C21711T G29527A AAAAAAAAAAAA29892-

EPI_ISL_471444
 2020-02-20 2020-06-21
 South Korea hCoV-19/Korea/KCDC2028/2020
 ATTAAAGGTTTA1- G5572T G11083T C14805T G26144T

EPI_ISL_471445
 2020-02-20 2020-06-21
 South Korea hCoV-19/Korea/KCDC2029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTC1- C1342A G11083T C14805T G26144T C26681T AAAAAAAAAAAAAAAA29888-

EPI_ISL_471451
 2020-02-20 2020-06-21
 South Korea hCoV-19/Korea/KCDC2045/2020
 ATTAAAGGTTTATAC1- G5572T A9889G G11083T C14805T G26144T

EPI_ISL_471453
 2020-02-20 2020-06-21
 South Korea hCoV-19/Korea/KCDC2047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- T490A C1101T G3119A C8782T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481376
 2020-02-20 2020-07-03
 South Korea hCoV-19/Korea/KCDC2056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C176T G5572T G11083T C14805T C19983T G26144T

EPI_ISL_490007
 2020-02-20 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/610/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C27527T C28854T

EPI_ISL_497951
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- A118G G11083T C14805T G26144T C26681T ACAAAAAAAAAAAAAA29869-

EPI_ISL_497953
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2032/2020
 G11083T C14805T A23512G C25416T G26144T C26681T

EPI_ISL_497954
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2033/2020
 G11083T C14805T G26144T C26681T

EPI_ISL_497955
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2034/2020
 A1C G11083T C14805T T21769C G26144T C26681T

EPI_ISL_497956
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2035/2020
 ATTA1- G11083T C14805T G26144T C26681T G27556T

EPI_ISL_497957
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2036/2020
 ATTA1- G11083T C14805T G26144T C26681T

EPI_ISL_497958
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2037/2020
 AT1- G11083T C14805T G26144T C26681T

EPI_ISL_497959
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2038/2020
 A1- G11083T C14805T G26144T C26681T

EPI_ISL_497967
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2066/2020
 ATTAAAGGTTTATAC1- G5572T G11083T C14805T G26144T ACAAAAAAAAAAAAAA29869-

EPI_ISL_497971
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2070/2020
 G5572T G11083T C14805T G22955T G26144T T29851A CTTAGGAGAATG29857-

EPI_ISL_497972
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2071/2020
 ATTAAAGGTTTATAC1- G5572T G11083T C14805T G26144T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_497973
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2072/2020
 ATTAAA1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497974
 2020-02-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2073/2020
 T921A G5572T G11083T C14805T G26144T ATTTTAATAGCTTCTTAGGAGAATGAC29844-

EPI_ISL_530016
 2020-02-20 2020-09-10
 Spain hCoV-19/Spain/MD-H12-89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7122C C14408T T17126C A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_538436
 2020-02-20 2020-09-17
 Singapore hCoV-19/Singapore/913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2325A T21524G C21575T C24784T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540993
 2020-02-20 2020-09-22
 South korea hCoV-19/South Korea/IHC597/2020
 ATTAAAGGTTTATACC1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_540994
 2020-02-20 2020-09-22
 South korea hCoV-19/South Korea/IHC610/2020
 ATTAAAGGTTTATACC1- T3142C G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

MT755894
 2020-02-20 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/610/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C27527T C28854T

EPI_ISL_413609 MT159720
 2020-02-21 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-4/2020
 C1385T G11083T C29230T C29635T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413610 MT159721
 2020-02-21 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-5/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413611 MT159722
 2020-02-21 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-6/2020
 G11083T G11410A C26326T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414480 MT184908
 2020-02-21 2020-03-12
 United States SARS-CoV-2/human/USA/CruiseA-21/2020
 C254T G11083T G29736T G29751C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414481 MT184909
 2020-02-21 2020-03-12
 United States SARS-CoV-2/human/USA/CruiseA-22/2020
 G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_417137 MT627270
 2020-02-21 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S84/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418218
 2020-02-21 2020-03-29
 France hCoV-19/France/HF1465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_419831 MT641645
 2020-02-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/NT01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3099T G11083T G28378T

EPI_ISL_419832 MT641646
 2020-02-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/NT02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C9333T G11083T C11671T T11737C

EPI_ISL_429968
 2020-02-21 2020-04-24
 France hCoV-19/France/HF1463/2020
 C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_447900 MT476384
 2020-02-21 2020-05-15
 United States SARS-CoV-2/ENV/USA/UF-11/2020
 A1T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_451306
 2020-02-21 2020-05-24
 Italy hCoV-19/Italy/PV-5314-B/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_451307
 2020-02-21 2020-05-24
 Italy hCoV-19/Italy/PV-5314-N/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G24077T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_454920
 2020-02-21 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-148/2020
 G26144T C29545T

EPI_ISL_454921
 2020-02-21 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-149/2020
 C1218T A5027G C15324T G22343C C27247T C29303T

EPI_ISL_454995
 2020-02-21 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-115/2020
 A4800G A9737G C10626T C29109T

EPI_ISL_471452
 2020-02-21 2020-06-21
 South Korea hCoV-19/Korea/KCDC2046/2020
 AT1- C11074T G11083T C14805T G26144T C26681T

EPI_ISL_471454
 2020-02-21 2020-06-21
 South Korea hCoV-19/Korea/KCDC2048/2020
 ATTAAAGGTTTAT1- G5572T C6327T G11083T C14805T G26144T

EPI_ISL_471455
 2020-02-21 2020-06-21
 South Korea hCoV-19/Korea/KCDC2049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C2857M G5572T A9204R G11083T A13614W C14805T G26144T

EPI_ISL_479870
 2020-02-21 2020-07-01
 Japan hCoV-19/Japan/PG-0159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C28854T G29543C TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_480032
 2020-02-21 2020-07-01
 Japan hCoV-19/Japan/PG-0362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G11083T C18656T C29635T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480043
 2020-02-21 2020-07-01
 Japan hCoV-19/Japan/PG-0373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_481370
 2020-02-21 2020-07-03
 South Korea hCoV-19/Korea/KCDC2050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_481371
 2020-02-21 2020-07-03
 South Korea hCoV-19/Korea/KCDC2051/2020
 T4402C G5062T C8782T C21846T T22117G T28144C

EPI_ISL_481372
 2020-02-21 2020-07-03
 South Korea hCoV-19/Korea/KCDC2052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G5572T G11083T C14805T G26144T

EPI_ISL_481374
 2020-02-21 2020-07-03
 South Korea hCoV-19/Korea/KCDC2054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G1721S G5572T G11083T C14805T C19983T G26144T

EPI_ISL_497970
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2069/2020
 G5572T G11083T C14805T C16575T A18095G G20974T T23395A G26144T TTTAATAGCTTCTTAGGAGAATG29846-

EPI_ISL_497975
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2074/2020
 ATTAAAGGTTTATACC1- C2146T G11083T C14805T G26144T C26681T ACAAAAAAAAAAAAAA29869-

EPI_ISL_497976
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2075/2020
 ATTAAAGGTT1- G5572T G11083T C12488T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497977
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2076/2020
 ATTAAAGGTTTA1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497978
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2077/2020
 ATTAAAGGTTT1- G662A G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497979
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2078/2020
 ATTAAAGGTTT1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_497980
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2079/2020
 ATTAAAGGTTTA1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497981
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2080/2020
 ATTAAAGGTTT1- G5572T G11083T C14805T C17747T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497982
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2081/2020
 ATTAAAGGTTT1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497984
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2083/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497991
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2090/2020
 ATTAAAGGTTTATACCTTC1- G5572T G11083T C14805T G26144T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_497992
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2091/2020
 ATTAAAGGTTTA1- G5572T G11083T C14805T G26144T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_497993
 2020-02-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2092/2020
 ATTAAAGGTTTATACCTTCCC1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_527873
 2020-02-21 2020-09-05
 Nigeria hCoV-19/Nigeria/ED01-CV155/2020
 ATTAA1- C21T A2480G C2558T G11083T C14805T G26144T C26625T C27297T G28851T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_530017
 2020-02-21 2020-09-10
 Spain hCoV-19/Spain/MD-H12-90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C26208T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_540995
 2020-02-21 2020-09-22
 South korea hCoV-19/South Korea/IHC614/2020
 ATTAAAGGTTTATACC1- G5572T G11083T C14805T A15337G G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_414571
 2020-02-22 2020-03-13
 China hCoV-19/Hong Kong/VM20002849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G11083T C29366T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417135 MT627288
 2020-02-22 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S82/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_420456
 2020-02-22 2020-04-06
 Australia hCoV-19/Australia/WA11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C3037T C9333T G11083T C11671T T11737C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_430131 MT627630
 2020-02-22 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S277/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_437615 MT447163
 2020-02-22 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI202620-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C2942T G4390T C8782T G20134T G24047A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_454911
 2020-02-22 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-134/2020
 G3013T C17167A

EPI_ISL_454973
 2020-02-22 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-229/2020
 T28144C

EPI_ISL_455010
 2020-02-22 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-278/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T4873C T13243C T14684C A23503T

EPI_ISL_457699
 2020-02-22 2020-06-02
 Italy hCoV-19/Italy/206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T A23403G TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_460079
 2020-02-22 2020-06-05
 Italy hCoV-19/Italy/BG-5825-22Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G A26530G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460091
 2020-02-22 2020-06-05
 Italy hCoV-19/Italy/MI-5925-22Feb/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_468039
 2020-02-22 2020-06-16
 Australia hCoV-19/Australia/SAP097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3099T G11083T G28378T

EPI_ISL_480033
 2020-02-22 2020-07-01
 Japan hCoV-19/Japan/PG-0363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G11083T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480044
 2020-02-22 2020-07-01
 Japan hCoV-19/Japan/PG-0374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1244T G3179A C6982T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480045
 2020-02-22 2020-07-01
 Japan hCoV-19/Japan/PG-0375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A691T G3179A C6982T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480046
 2020-02-22 2020-07-01
 Japan hCoV-19/Japan/PG-0376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_481375
 2020-02-22 2020-07-03
 South Korea hCoV-19/Korea/KCDC2055/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- G5572T G11083T C14805T G26144T

EPI_ISL_481378
 2020-02-22 2020-07-03
 South Korea hCoV-19/Korea/KCDC2058/2020
 G5572T G11083T T12520C C14805T G26144T

EPI_ISL_486659
 2020-02-22 2020-07-10
 Italy hCoV-19/Italy/Hsacco-3/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_497983
 2020-02-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2082/2020
 ATTAAAGGTTTAT1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497985
 2020-02-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2084/2020
 G5572T G11083T C14805T G26144T

EPI_ISL_497987
 2020-02-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2086/2020
 ATTAAAGGTTTATAC1- G5572T G11083T G13564T C14805T G15708T G26144T

EPI_ISL_497989
 2020-02-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- G5572T G11083T C14805T C25521T G26144T

EPI_ISL_530018
 2020-02-22 2020-09-10
 Spain hCoV-19/Spain/MD-H12-91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A18585T A20268G A23403G C28638T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_540996
 2020-02-22 2020-09-22
 South korea hCoV-19/South Korea/IHC685/2020
 ATTAAAGGTTTATACC1- G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_412026
 2020-02-23 2020-02-24
 China hCoV-19/Hefei/2/2020
 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_412862 MT118835
 2020-02-23 2020-02-27
 United States 2019-nCoV/USA-CA9/2020
 C9924T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419211
 2020-02-23 2020-04-01
 Israel hCoV-19/Israel/ISR_JP0320/2020
 ATTAAAGGTTTATACCTTCC1- CA21GG G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_425117
 2020-02-23 2020-04-14
 South Korea hCoV-19/Korea/KCDC2001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_426163
 2020-02-23 2020-04-15
 South Korea hCoV-19/Korea/KCDC2003/2020
 TTAAAGGTTTATACC2- G7675T T8767C C8782T C17104T C18167T G26167T T28144C G29593A ACAAAAAAAAAAAAAA29869- A29885G

EPI_ISL_426167
 2020-02-23 2020-04-15
 South Korea hCoV-19/Korea/KCDC2003/2020/P1
 TTAAAGGTTTATACC2- G7675T T8767C C8782T C17104T C18167T G26167T T28144C G29593A ACAAAAAAAAAAAAAA29869- A29885G

EPI_ISL_426181
 2020-02-23 2020-04-15
 South Korea hCoV-19/Korea/KCDC2011/2020
 ATTAAAGGTTTATAC1- C16T T4402C G5062T C8782T C17474T T28144C A29871G AAAAAAAAAAAAAAAA29888-

EPI_ISL_426183
 2020-02-23 2020-04-15
 South Korea hCoV-19/Korea/KCDC2013/2020
 ATTAAAGGTTTATAC1- T490A C1101T G3119A C8782T C24034T T26729C G28077C T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_455008
 2020-02-23 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-274/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- A9243G C11074T G11083T T13243C G29742T

EPI_ISL_455365
 2020-02-23 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-132/2020
 G9130T G18412- T25382C T28144C C29095T G29179T

EPI_ISL_455366
 2020-02-23 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-133/2020
 G10412T C26447G T28144C T29251- G29737T

EPI_ISL_455367
 2020-02-23 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-139/2020
 G18412- C26447G

EPI_ISL_455368
 2020-02-23 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-144/2020
 C8782T C19154T C26447G T28144C T28250G A28254- C29095T G29179T

EPI_ISL_457701
 2020-02-23 2020-06-02
 Oman hCoV-19/Oman/RESP-20-797/2020
 C884T G1397A G8653T G11083T T28688C G29742T

EPI_ISL_479864
 2020-02-23 2020-07-01
 Japan hCoV-19/Japan/PG-0141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G1458T GG28903CT TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_481373
 2020-02-23 2020-07-03
 South Korea hCoV-19/Korea/KCDC2053/2020
 G5572T C6267T G11083T C14805T G26144T

EPI_ISL_481377
 2020-02-23 2020-07-03
 South Korea hCoV-19/Korea/KCDC2057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- G2129K G5572T A9889G G11083T G11999K G12758R C14805T G26144T T27705K

EPI_ISL_486660
 2020-02-23 2020-07-10
 Italy hCoV-19/Italy/Hsacco-4/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490008 MT755895
 2020-02-23 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/627/2020
 C241T C1549T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_497988
 2020-02-23 2020-07-26
 South Korea hCoV-19/Korea/KCDC2087/2020
 ATTAAAGGTTTATACCT1- G5572T G11083T C14805T G26144T

EPI_ISL_497994
 2020-02-23 2020-07-26
 South Korea hCoV-19/Korea/KCDC2093/2020
 A1- G5572T A10699G G11083T C14805T G26144T

EPI_ISL_530019
 2020-02-23 2020-09-10
 Spain hCoV-19/Spain/MD-H12-93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1181T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_540997
 2020-02-23 2020-09-22
 South korea hCoV-19/South Korea/IHC719/2020
 ATTAAAGGTTTATACC1- T3142C G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_412970 MT152824
 2020-02-24 2020-03-01
 United States SARS-CoV-2/human/USA/WA2/2020
 C5784T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_413622 MT159715
 2020-02-24 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-17/2020
 A5845T G11083T A25137C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413623 MT159716
 2020-02-24 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-18/2020
 TGGTCATGTTATGGT508- G11083T C22033A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413996
 2020-02-24 2020-03-10
 Switzerland hCoV-19/Switzerland/TI9486/2020
 ATTAAAG1- A187G C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_414485 MT184913
 2020-02-24 2020-03-12
 United States 2019-nCoV/USA-CruiseA-26/2020
 G11083T C12513Y T20988Y C25587Y C28367Y G28916A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414519 MT215194
 2020-02-24 2020-03-13
 China SARS-CoV-2/human/HKG.85_VM20002868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1595A C9962T C11704T T13929C C14724T T21584G G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417445
 2020-02-24 2020-02-24
 Italy hCoV-19/Italy/UniMI01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T A11827T G11831T C11871T T11987A T12538A A12547T T12551A C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_417446
 2020-02-24 2020-02-24
 Italy hCoV-19/Italy/UniMI02/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C7239A T7249G G7272A C7279A G7290A C7296A C7299A T7345A T7348A T7351G A7603C A7606T G7646C T7666A A7710G C14408T A23403G A23450T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864A

EPI_ISL_417447
 2020-02-24 2020-03-26
 Italy hCoV-19/Italy/UniMI03/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864A

EPI_ISL_419247
 2020-02-24 2020-04-01
 China hCoV-19/Hong Kong/HKPU83-1702/2020
 G1149T C9962T G11083T C14724T T21584G G26144T

EPI_ISL_419835 MT641648
 2020-02-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/NT05/2020
 ATTAAAGGT1- G11083T C29635T

EPI_ISL_430292 MT632586
 2020-02-24 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S254/2020
 C5784T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_437932
 2020-02-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0045/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_450442 MT412134
 2020-02-24 2020-04-29
 China SARS-CoV-2/human/CHN/HN03/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A270G T4402C G5062T C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_454915
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-138/2020
 C15324T C28093T C29303T

EPI_ISL_454998
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-120/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C8782T T28144C

EPI_ISL_455004
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-269/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C

EPI_ISL_455009
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-276/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11897T T13243C T14684C G24262T

EPI_ISL_455013
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-282/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C C26447G

EPI_ISL_455370
 2020-02-24 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-146/2020
 G625T C19154T C26447G T28144C T28250G A28254-

EPI_ISL_457704
 2020-02-24 2020-06-02
 Oman hCoV-19/Oman/RESP-20-837/2020
 C635T C884T G1397A G8653T G11083T G14443T T24211C C27155T T28688C G29742T

EPI_ISL_460086
 2020-02-24 2020-06-05
 Italy hCoV-19/Italy/CR-7070-24Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479997
 2020-02-24 2020-07-01
 Japan hCoV-19/Japan/PG-0322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_481379
 2020-02-24 2020-07-03
 South Korea hCoV-19/Korea/KCDC2059/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G5572T A9889G G11083T C14805T C16961T G26144T

EPI_ISL_490009
 2020-02-24 2020-07-14
 Saudi Arabia hCoV-19/Saudi Arabia/640/2020
 C241T C3037T C11956T T13345G C14408T T17796G C18877T A23403G G25563T C26735T

EPI_ISL_497784
 2020-02-24 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497986
 2020-02-24 2020-07-26
 South Korea hCoV-19/Korea/KCDC2085/2020
 ATTAAAGGTTTATACCTTCC1- G5572T G11083T C14805T G22346T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497990
 2020-02-24 2020-07-26
 South Korea hCoV-19/Korea/KCDC2089/2020
 ATTAAAGGTTTA1- G5572T G11083T C14805T G26144T AAA29901-

EPI_ISL_506947
 2020-02-24 2020-08-02
 South Korea hCoV-19/Korea/KCDC2153/2020
 ATTAAAGGTTTATA1- G256T G5572T G11083T C14805T C21575T G26144T C29098T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_530020
 2020-02-24 2020-09-10
 Spain hCoV-19/Spain/MD-H12-94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539531
 2020-02-24 2020-09-18
 Spain hCoV-19/Spain/CN-ISCIII-201048/2020
 C241T C3037T C3792T A4000C C8645A C14408T G21280A A21487G T21539C T21656C A23403G A23880T T29760C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_568579
 2020-02-24 2020-10-02
 Italy hCoV-19/Italy/LOM-INMI-10734/2020
 C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

MT755896
 2020-02-24 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/640/2020
 C241T C3037T C11956T T13345G C14408T T17796G C18877T A23403G G25563T C26735T

EPI_ISL_412912
 2020-02-25 2020-02-28
 Germany hCoV-19/Germany/Baden-Wuerttemberg-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_412964
 2020-02-25 2020-02-28
 Brazil hCoV-19/Brazil/SPBR-01/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAA29891-

EPI_ISL_413619 MT159712
 2020-02-25 2020-03-09
 United States SARS-CoV-2/human/USA/CruiseA-14/2020
 C6636T G11083T C11750T C11956T T25795C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414005
 2020-02-25 2020-03-10
 United Kingdom hCoV-19/England/200940527/2020
 A2480G C2558T C11171Y C14805T T21072C G26144T

EPI_ISL_414009
 2020-02-25 2020-03-10
 United Kingdom hCoV-19/England/200960515/2020
 C10741T C14805T G26144T

EPI_ISL_414497 MT582498
 2020-02-25 2020-03-12
 Germany SARS-CoV-2/human/DEU/NRW-02.1/2020
 G1440A G2891A

EPI_ISL_414517 MT215195
 2020-02-25 2020-03-13
 China SARS-CoV-2/human/HKG/90_VM20002907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1595A C9962T C11704T T13929C C14724T T21584G G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_414623
 2020-02-25 2020-03-15
 France hCoV-19/France/GE1583/2020/P1
 C8782T T9477A C14805T C25553T G25979T T28144C C28657T C28863T A29887C A29891C A29894C

EPI_ISL_414663 CNA0013710 MT568635
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0016/2020
 ATTAAAGGTTT1- C8782T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_414687 CNA0013712 MT568637
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0031/2020
 ATTAAAGGTTTA1- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872G

EPI_ISL_414688 CNA0013713 MT568638
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0042/2020
 ATTAAAGGTTTAT1- C8782T C26447G T28144C T28250G A28254- C29095T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_414689 CNA0013714 MT568639
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0044/2020
 ATTAAAGGTTT1- C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872G

EPI_ISL_414690 CNA0013715 MT568640
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0047/2020
 ATTAAAGGTTTAT1- C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_414691 CNA0013716 MT568641
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0048/2020
 AT1- C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_414692 CNA0013717 MT568634
 2020-02-25 2020-03-16
 China Guangzhou/GZMU0014/2020
 ATTAAAGGTTTA1- A1430G G16535T C18568T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_418251
 2020-02-25 2020-02-25
 Spain hCoV-19/Spain/Madrid201105/2020
 C241T C3037T C8782T T11244C C14408T C21263T A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_430737
 2020-02-25 2020-04-27
 China hCoV-19/Beijing/BJ1112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1848T T8767C C8782T C9520T C17104T A22622G G26167T GAT27382CTC A28055G T28144C G29593A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435121
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0184/2020
 C1170T C1185T G1397A G11083T T16545C C18377T T28688C G29374A G29742T

EPI_ISL_435126
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0904/2020
 G61T G1397A G11083T C20235A T20787C T22042C T28688C T28835C A29060G G29742T

EPI_ISL_435131
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L2409/2020
 G1397A G11083T T28688C G29742T

EPI_ISL_435135
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L4682/2020
 G1397A G2246A C9246T T28688C G29742T

EPI_ISL_435138
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L6599/2020
 C13957T C15324T T21644C C23170T C24378T C29303T

EPI_ISL_435139
 2020-02-25 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L6627/2020
 G1397A C2724T G11083T T28688C G29742T

EPI_ISL_437613 MT447165
 2020-02-25 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI202872-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T G6865T C8782T G10670C G20134T G24047A T28144C TTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29709-

EPI_ISL_437614 MT447164
 2020-02-25 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI202769-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G529T A895G T1891G C2652T G20134T G24047A T28144C CCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29732-

EPI_ISL_447252
 2020-02-25 2020-05-17
 Taiwan hCoV-19/Taiwan/TSGH-26/2020
 G199T C1059T G1397A A1637T T2290G -11075TTT G11083T G25785T A28288G T28648C T28688C T28888A G29742T -29870CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC

EPI_ISL_447920
 2020-02-25 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_1716/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C A29873G AAAAAAAAAAAA29892-

EPI_ISL_454912
 2020-02-25 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-135/2020
 

EPI_ISL_455012
 2020-02-25 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-280/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T4873C T13243C T14684C

EPI_ISL_460094
 2020-02-25 2020-06-05
 Italy hCoV-19/Italy/PV-8058-25Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20255G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_464185
 2020-02-25 2020-06-11
 United Kingdom hCoV-19/England/20094061404/2020
 G11083T A19949W A20055R

EPI_ISL_464186
 2020-02-25 2020-06-11
 United Kingdom hCoV-19/England/20094061504/2020
 C635Y C6606Y C7735Y G11083T C11976Y C28253Y

EPI_ISL_479802
 2020-02-25 2020-07-01
 Japan hCoV-19/Japan/PG-0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C11752T A14513G AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_479852
 2020-02-25 2020-07-01
 Japan hCoV-19/Japan/PG-0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G11083T TTTGGGTGTTTA21982- C28310A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479871
 2020-02-25 2020-07-01
 Japan hCoV-19/Japan/PG-0160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T G28380T C28854T G29543C ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_479998
 2020-02-25 2020-07-01
 Japan hCoV-19/Japan/PG-0323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480047
 2020-02-25 2020-07-01
 Japan hCoV-19/Japan/PG-0377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_493137 MT781415
 2020-02-25 2020-07-21
 Thailand SARS-CoV-2/human/THA/MUMT-3/2020
 ATT1- A895G C2942T G4390T C8782T G24047A T28144C GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_501220
 2020-02-25 2020-07-31
 Malaysia hCoV-19/Malaysia/6359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C11752T C19170A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_530021
 2020-02-25 2020-09-10
 Spain hCoV-19/Spain/MD-H12-95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15327T A20268G A23403G G29734C C29741T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_413019
 2020-02-26 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477102/2020
 -11075TTT G11083T C14805T T17247C C24378T G26144T C26894T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_413997
 2020-02-26 2020-03-10
 Switzerland hCoV-19/Switzerland/GE3895/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_414011
 2020-02-26 2020-03-10
 United Kingdom hCoV-19/England/200990006/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_414499 MT582496
 2020-02-26 2020-03-12
 Germany SARS-CoV-2/human/DEU/NRW-04/2020
 G1440A G2891A C4655T C22323Y

EPI_ISL_414600
 2020-02-26 2020-03-14
 France hCoV-19/France/GE1583/2020
 C8782T T9477A C14805T C25553T G25979T T28144C C28657T C28863T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_414624
 2020-02-26 2020-03-15
 France hCoV-19/France/N1620/2020/P1
 T18C A187G C241T C3037T C10728T C14408T A23403G

EPI_ISL_414625
 2020-02-26 2020-03-15
 France hCoV-19/France/PL1643/2020
 C241T C1059T C3037T C12049T T13521C C14408T A23403G G25563T

EPI_ISL_415741 MT370516
 2020-02-26 2020-03-19
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-03/2020
 AT1- C1059T G1397A G11083T C23934T T28648C T28688C G29742T A29903-

EPI_ISL_416142
 2020-02-26 2020-03-20
 Denmark hCoV-19/Denmark/SSI-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23116T A23403G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_416502
 2020-02-26 2020-03-22
 France hCoV-19/France/B2330/2020
 C241T C1059T C3037T G12866A C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_417134 MT627263
 2020-02-26 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S81/2020
 A4494G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417484
 2020-02-26 2020-03-26
 Norway hCoV-19/Norway/1380/2020
 ATTAAAGGT1- C884T G1397A C3040T G8653T A9353R G11083T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_418219
 2020-02-26 2020-03-29
 France hCoV-19/France/B1623/2020
 C241T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418247
 2020-02-26 2020-02-26
 Spain hCoV-19/Spain/CastillayLeon201061/2020
 C241T C3037T C8782T C14408T C17285T A23403G GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_419250
 2020-02-26 2020-04-01
 China hCoV-19/Hong Kong/HKPU89-2502/2020
 G1149T C9962T G11083T C14724T T21584G G26144T

EPI_ISL_419554
 2020-02-26 2020-04-02
 United States hCoV-19/USA/CA_2602/2020
 G14718T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419656
 2020-02-26 2020-04-03
 Austria hCoV-19/Austria/CeMM0003/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_421246
 2020-02-26 2020-04-07
 China hCoV-19/Nanchang/JXN3T4/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T28144C AAAAAAAAAAAA29892-

EPI_ISL_427809
 2020-02-26 2020-04-19
 South Korea hCoV-19/Korea/KCDC2015/2020
 ATTAAAGGTTTATACC1- CA117TG G5572T G11083T C14805T G26144T C28311T A29871T AAAAAAAAAAAAAAAA29888-

EPI_ISL_430126 MT627627
 2020-02-26 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S272/2020
 A4494G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_435580
 2020-02-26 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC101/2020
 G14718T

EPI_ISL_450747
 2020-02-26 2020-05-22
 Canada hCoV-19/Canada/ON_SHSC-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C835T C884T G1397A G8653T G11083T T28688C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_454996
 2020-02-26 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-116/2020
 C6720T C8782T C21034T T28144C

EPI_ISL_455007
 2020-02-26 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-272/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C965T T4873C T13243C T14684C A26098T

EPI_ISL_457698 CNA0013992
 2020-02-26 2020-06-02
 China Guangzhou/GZMU0117/2020
 T3160C G6819T C17373T C21711T G29527A AAAAAAAAAAAA29892-

EPI_ISL_460082
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/BG-9209-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460083
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/BG-9225-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G A26530G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460087
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/CR-9206-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460088
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/CR-9214-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T C23191T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460089
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/CR-9491-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460095
 2020-02-26 2020-06-05
 Italy hCoV-19/Italy/PV-9675-26Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C14980T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_464187
 2020-02-26 2020-06-11
 United Kingdom hCoV-19/England/20096051004/2020
 T3628Y G11083T C11976Y

EPI_ISL_464195
 2020-02-26 2020-06-11
 United Kingdom hCoV-19/England/20098017604/2020
 C241T C3037T C7420T C14408T A23403G

EPI_ISL_475544
 2020-02-26 2020-06-23
 Sweden hCoV-19/Sweden/20-04736/2020
 T1391G G1397A C3393T T14577C T28688C G29742T

EPI_ISL_479826
 2020-02-26 2020-07-01
 Japan hCoV-19/Japan/PG-0071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C11752T G16636T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480048
 2020-02-26 2020-07-01
 Japan hCoV-19/Japan/PG-0378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_480049
 2020-02-26 2020-07-01
 Japan hCoV-19/Japan/PG-0379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G3179A C6982T C8782T G25106A T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_485398 MT730002
 2020-02-26 2020-07-08
 South Korea SARS-CoV-2/human/KOR/2020-CoV55_Nasopharynx/2020
 ATTAAAGGTTTATAC1- T3142C G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_486664
 2020-02-26 2020-07-10
 Italy hCoV-19/Italy/Hsacco-8/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_490010 MT755897
 2020-02-26 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/656/2020
 C241T C3037T G3476A C14408T C18877T A23403G G25563T G25687T C26735T

EPI_ISL_497995
 2020-02-26 2020-07-26
 South Korea hCoV-19/Korea/KCDC2094/2020
 G5572T G11083T C14805T C19145T G26144T

EPI_ISL_510547
 2020-02-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2203/2020
 AC27- A29T C32A G5572T G11083T C14805T G26144T C28311T

EPI_ISL_516083 MT479216
 2020-02-26 2020-05-18
 Italy SARS-CoV-2/human/ITA/71205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T G22205S A23403G T25464Y A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_527916
 2020-02-26 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42167340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527917
 2020-02-26 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42167842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_530022
 2020-02-26 2020-09-10
 Spain hCoV-19/Spain/MD-H12-96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5411A C6541T A11830G C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

MT276324
 2020-02-26 2020-04-02
 United States SARS-CoV-2/human/USA/CA_2602/2020
 G14718T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_412972
 2020-02-27 2020-03-01
 Mexico hCoV-19/Mexico/CDMX-InDRE_01/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_413020
 2020-02-27 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477377/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC G29422T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_413025 MT163716
 2020-02-27 2020-03-03
 United States SARS-CoV-2/human/USA/WA3-UW1/2020
 A1T AC35TT T2446C C3411T G5572T G11083T C14805T G26144T G29864A TG29867AA C29870A

EPI_ISL_413490
 2020-02-27 2020-03-05
 New Zealand hCoV-19/New Zealand/01/2020
 G1397A G11083T G25618A T28688C G29742T

EPI_ISL_413513
 2020-02-27 2020-03-06
 South Korea hCoV-19/South Korea/KUMC03/2020
 ATTAAAGGTTTA1- T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413514
 2020-02-27 2020-03-06
 South Korea hCoV-19/South Korea/KUMC04/2020
 ATTAAAGGTTTA1- T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413515
 2020-02-27 2020-03-06
 South Korea hCoV-19/South Korea/KUMC05/2020
 ATTAAAGGTTTA1- T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413516
 2020-02-27 2020-03-06
 South Korea hCoV-19/South Korea/KUMC06/2020
 ATTAAAGGTTTA1- T4402C G5062T C8782T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413555
 2020-02-27 2020-03-07
 United Kingdom hCoV-19/Wales/PHW1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_413558 MT419831
 2020-02-27 2020-03-07
 United States SARS-CoV-2/human/USA/CA-CDPH-UC2/2020
 C9924T A15641C TAT29832CTG

EPI_ISL_413559 MT419830
 2020-02-27 2020-03-07
 United States SARS-CoV-2/human/USA/CA-CDPH-UC3/2020
 C21T C9924T C9951T

EPI_ISL_413999
 2020-02-27 2020-03-10
 Switzerland hCoV-19/Switzerland/AG0361/2020
 ATTAAAGGTTT1- C241T C3037T C14408T G20398A A23403G A26530G AAAAA29899-

EPI_ISL_414008
 2020-02-27 2020-03-10
 United Kingdom hCoV-19/England/200960041/2020
 G1397A G11083T C12249T G21641K C21658T T28688C G29742T

EPI_ISL_414012
 2020-02-27 2020-03-10
 United Kingdom hCoV-19/England/200990723/2020
 C241T C3037T G11842A C14408T A23403G GGG28881AAC

EPI_ISL_414019
 2020-02-27 2020-03-10
 Switzerland hCoV-19/Switzerland/GE3121/2020
 ATTAAAG1- C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_414020
 2020-02-27 2020-03-10
 Switzerland hCoV-19/Switzerland/GE5373/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_414021
 2020-02-27 2020-03-10
 Switzerland hCoV-19/Switzerland/BL0902/2020
 ATTAAAGGTT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC AAA29901-

EPI_ISL_414022
 2020-02-27 2020-03-10
 Switzerland hCoV-19/Switzerland/GE9586/2020
 ATTAAAGG1- C241T C3037T C14408T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_414505 MT582494
 2020-02-27 2020-03-13
 Germany SARS-CoV-2/human/DEU/NRW-06/2020
 G1440A G2891A

EPI_ISL_414523
 2020-02-27 2020-03-13
 United Kingdom hCoV-19/England/200990660/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_414686
 2020-02-27 2020-03-16
 China hCoV-19/Guangzhou/GZMU0030/2020/P2
 ATTAAAGGTTTA1- C186T C1734T G26458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_415641
 2020-02-27 2020-03-18
 Georgia hCoV-19/Georgia/Tb-54/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A915G G11083T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_415698
 2020-02-27 2020-03-19
 Switzerland hCoV-19/Switzerland/GR2988/2020
 ATTA1- C241T C3037T C13176T C14408T A23403G GGG28881AAC

EPI_ISL_415699
 2020-02-27 2020-03-19
 Switzerland hCoV-19/Switzerland/GR3043/2020
 ATTAAAGGT1- C241T C3037T C13176T C14408T A23403G GGG28881AAC

EPI_ISL_415743 MT370518
 2020-02-27 2020-03-19
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-05/2020
 C1059T G1397A G11083T C23934T T28648C T28688C G29742T

EPI_ISL_416484 MT233519
 2020-02-27 2020-03-22
 Spain SARS-CoV-2/human/ESP/Valencia5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417096 MT627276
 2020-02-27 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S43/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417483
 2020-02-27 2020-03-26
 Norway hCoV-19/Norway/1379/2020
 ATTAAAG1- C1346M G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_419555
 2020-02-27 2020-04-02
 United States hCoV-19/USA/WA_5030/2020
 T2446C C3411T G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419558
 2020-02-27 2020-04-02
 United States hCoV-19/USA/OR_2656/2020
 G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420799 MT304474
 2020-02-27 2020-04-06
 South Korea SARS-CoV-2/human/KOR/BA-ACH_2604/2020
 G5572T G11083T C14805T G26144T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_428830
 2020-02-27 2020-04-22
 Singapore hCoV-19/Singapore/51/2020
 ATTAAA1- C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_430847
 2020-02-27 2020-04-28
 Sweden hCoV-19/Sweden/20-04631/2020
 G1397A A7970G G11083T G14653A C18788T T28688C G29742T

EPI_ISL_437993
 2020-02-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0143/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC A29865R AAAAAAAAAAAAAA29890-

EPI_ISL_450512
 2020-02-27 2020-05-21
 Lebanon hCoV-19/Lebanon/S5_762/2020
 G8A C884T G1397A C1884T A7766G G8653T G11083T C25578T T28688C G29742T

EPI_ISL_454750
 2020-02-27 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10001/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_454916
 2020-02-27 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-140/2020
 C17690T C22482T

EPI_ISL_454992
 2020-02-27 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-109/2020
 G26144T

EPI_ISL_457749
 2020-02-27 2020-06-02
 Italy hCoV-19/Italy/484/2020
 ATTAAA1- C241T C3037T C14408T A23403G A26530G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_464193
 2020-02-27 2020-06-11
 United Kingdom hCoV-19/England/20098017204/2020
 C635Y C7735Y G11083T C11976Y C28253Y

EPI_ISL_464194
 2020-02-27 2020-06-11
 United Kingdom hCoV-19/England/20098017504/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_470851
 2020-02-27 2020-06-19
 Australia hCoV-19/Australia/WA34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C9333T G11083T C11671T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_476559
 2020-02-27 2020-06-25
 Morocco hCoV-19/Morocco/refstage1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_479827
 2020-02-27 2020-07-01
 Japan hCoV-19/Japan/PG-0072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A10276G C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479828
 2020-02-27 2020-07-01
 Japan hCoV-19/Japan/PG-0074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAAC1- C11752T C19170A A29433G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490011 MT755898
 2020-02-27 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/671/2020
 C66T C241T C3037T T4096C C5700T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_497996
 2020-02-27 2020-07-26
 South Korea hCoV-19/Korea/KCDC2095/2020
 ATTAAAGGTTTATACC1- G5572T G11083T C14805T C25416T G26144T AATGACAAAAAAAAAAAA29865- A29885G

EPI_ISL_497998
 2020-02-27 2020-07-26
 South Korea hCoV-19/Korea/KCDC2097/2020
 ATTAA1- C203T G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_506948
 2020-02-27 2020-08-02
 South Korea hCoV-19/Korea/KCDC2154/2020
 ATTAA1- G256T G5572T G11083T C14805T C21575T G26144T C29098T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_506949
 2020-02-27 2020-08-02
 South Korea hCoV-19/Korea/KCDC2155/2020
 AT1- G256T G5572T G11083T C14805T C21575T G26144T C29098T

EPI_ISL_530023
 2020-02-27 2020-09-10
 Spain hCoV-19/Spain/MD-H12-97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T A12048G C13115T T25541C C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_547499
 2020-02-27 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T24079A GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT276325
 2020-02-27 2020-04-02
 United States SARS-CoV-2/human/USA/WA_5030/2020
 T2446C C3411T G5572T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

MT276328
 2020-02-27 2020-04-02
 United States SARS-CoV-2/human/USA/OR_2656/2020
 G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_412975
 2020-02-28 2020-03-02
 Australia hCoV-19/Australia/NSW05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G4255A G11083T A20047G T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_413016
 2020-02-28 2020-03-02
 Brazil hCoV-19/Brazil/SPBR-02/2020
 C2388T G11083T C14805T T17247C G26144T

EPI_ISL_413455 MT163717
 2020-02-28 2020-03-04
 United States SARS-CoV-2/human/USA/WA4-UW2/2020
 ATTAAA1- C8782T C17747T A17858G C18060T T28144C TG29867AA C29870A

EPI_ISL_413488 MT582499
 2020-02-28 2020-03-05
 Germany SARS-CoV-2/human/DEU/NRW-01/2020
 G1440A G2891A C4655T G8422A C22323T C29546A

EPI_ISL_413557 MT419829
 2020-02-28 2020-03-07
 United States SARS-CoV-2/human/USA/CA-CDPH-UC1/2020
 C5184T C8782T C17747T A17858G C18060T T28144C C29253T

EPI_ISL_413560 MT598634
 2020-02-28 2020-03-07
 United States SARS-CoV-2/human/USA/WA-S3/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_413594
 2020-02-28 2020-03-08
 Australia hCoV-19/Australia/NSW08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G25323T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_413595
 2020-02-28 2020-03-09
 Australia hCoV-19/Australia/NSW09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T C24381T G28457A T28688C C29627T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_413596
 2020-02-28 2020-03-08
 Australia hCoV-19/Australia/NSW10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- T18351Y G25323T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_414006
 2020-02-28 2020-03-10
 United Kingdom hCoV-19/England/200990724/2020
 A2480G C2558T C14805T T21072C G26144T

EPI_ISL_414007
 2020-02-28 2020-03-10
 United Kingdom hCoV-19/England/200990725/2020
 A2480G C2558T C14805T T21072C G26144T

EPI_ISL_414509 MT582491
 2020-02-28 2020-03-13
 Germany SARS-CoV-2/human/DEU/NRW-09/2020
 G1440A G2891A C27849T

EPI_ISL_414522
 2020-02-28 2020-03-13
 United Kingdom hCoV-19/England/200990002/2020
 G1397A A3263G A8981G G9479T A9514G T9931C T28688C G29742T

EPI_ISL_415454
 2020-02-28 2020-03-17
 Switzerland hCoV-19/Switzerland/GE1422/2020
 ATTAAAG1- C241T C3037T C10834T C14408T A23403G GGG28881AAC T29148C

EPI_ISL_415455
 2020-02-28 2020-03-17
 Switzerland hCoV-19/Switzerland/GE0199/2020
 ATTAAAGGTTT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_415700
 2020-02-28 2020-03-19
 Switzerland hCoV-19/Switzerland/GE1402/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G GGG28881AAC T29148C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416143
 2020-02-28 2020-03-20
 Denmark hCoV-19/Denmark/SSI-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T T13402G C14408T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_417093 MT627286
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S40/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417095 MT627295
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S42/2020
 C5784T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417097 MT627275
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S44/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417147 MT627258
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S94/2020
 C8782T C14805T C17747T A17858G C18060T T28144C

EPI_ISL_417148 MT627235
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S95/2020
 C1326T C8782T C17304T C17747T A17858G C18060T T28144C

EPI_ISL_417149 MT627226
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S96/2020
 C1326T C8782T C17304T C17747T A17858G C18060T T28144C

EPI_ISL_417150 MT627219
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S97/2020
 C8782T C17304T C17747T A17858G C18060T T28144C

EPI_ISL_417152 MT627318
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S99/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417154 MT627290
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S101/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417155 MT627274
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S102/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417156 MT627253
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S103/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417158 MT627252
 2020-02-28 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S105/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417922 MT527178
 2020-02-28 2020-03-27
 Italy SARS-CoV-2/human/ITA/INMI4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T A23403G GGG28881AAC TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_418220
 2020-02-28 2020-03-29
 France hCoV-19/France/HF1645/2020
 C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418243
 2020-02-28 2020-03-29
 Spain hCoV-19/Spain/Andalucia201272/2020
 G11083T C14805T C23707T G26144T T27384C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418382
 2020-02-28 2020
 Canada hCoV-19/Canada/ON_PHL5930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418799
 2020-02-28 2020-03-31
 Australia hCoV-19/Australia/QLDID922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C15324T A15477G T21644C C24130T C29303T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418995
 2020-02-28 2020-04-01
 Singapore hCoV-19/Singapore/12Clin/2020
 C8782T C25568A ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_419553 MT276323
 2020-02-28 2020-04-02
 United States SARS-CoV-2/human/USA/RI_0520/2020
 C241T C3037T C3369T C6190T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419559 MT276329
 2020-02-28 2020-04-02
 United States SARS-CoV-2/human/USA/FL_5125/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419560 MT276330
 2020-02-28 2020-04-02
 United States SARS-CoV-2/human/USA/FL_5091/2020
 A5995G C8782T C16457T A17858G C18060T C22480T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420135
 2020-02-28 2020-04-05
 Norway hCoV-19/Norway/1455/2020
 ATTAAAGGTT1- T7876A G11083T T22392Y A22404W G22454R G22462K G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_425178
 2020-02-28 2020-04-14
 Spain hCoV-19/Spain/Valencia54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430272 MT632567
 2020-02-28 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S234/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_437994
 2020-02-28 2020-05-12
 Austria hCoV-19/Austria/CeMM0146/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_437995
 2020-02-28 2020-05-12
 Austria hCoV-19/Austria/CeMM0147/2020
 C241T G2447K C3037T G12832A C14408T G14701K C14703Y T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_452139
 2020-02-28 2020-05-26
 Mexico hCoV-19/Mexico/CDMX-InDRE_07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_454751
 2020-02-28 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10002/2020
 ATTA1- C241T C3037T A6314T T7570C A10018T C14408T G15392A A23403G GGG28881AAC T29148C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_454752
 2020-02-28 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordBrabant_10003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- T514C ATG1605- C17410T G25116T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_454753
 2020-02-28 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_10004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_454754
 2020-02-28 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_10005/2020
 ATTAAA1- C241T C3037T C14408T A18172T A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_454922
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-152/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T25382C

EPI_ISL_454923
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-155/2020
 G10412T A18114G T25382C

EPI_ISL_454924
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-156/2020
 C17894T G25074T

EPI_ISL_454925
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-157/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G6622T G10412T ATA17609- C22482T

EPI_ISL_454926
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-158/2020
 C9534A A17423G C28854T

EPI_ISL_454927
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-159/2020
 G10412T

EPI_ISL_454928
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-160/2020
 

EPI_ISL_454929
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-161/2020
 AAGATTTTC729- G3013T C8529T C17690T

EPI_ISL_454939
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-173/2020
 AAGATTTTC729- G3013T C22482T

EPI_ISL_454940
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-176/2020
 

EPI_ISL_454993
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-113/2020
 G26144T

EPI_ISL_455314
 2020-02-28 2020-05-29
 Spain hCoV-19/Spain/Andalucia201257/2020
 AT1- C6449T C8782T TG8827AT C16267T G16507T A19659G A20264C T28144C

EPI_ISL_455373
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-154/2020
 G18412- T26330C

EPI_ISL_455376
 2020-02-28 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-174/2020
 C8782T C19154T C26447G T28144C T28250G A28254- C29095T G29179T

EPI_ISL_460080
 2020-02-28 2020-06-05
 Italy hCoV-19/Italy/BG-11639-28Feb/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A2342G C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460090
 2020-02-28 2020-06-05
 Italy hCoV-19/Italy/LO-11550-28Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C17676T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460092
 2020-02-28 2020-06-05
 Italy hCoV-19/Italy/PV-11951-28Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_464199
 2020-02-28 2020-06-11
 United Kingdom hCoV-19/England/20099000304/2020
 G1397A G11083T C12249Y C21658T T28688C G29742T

EPI_ISL_464201
 2020-02-28 2020-06-11
 United Kingdom hCoV-19/England/20099000804/2020
 C7735Y G11083T C20956Y C22432G C25521Y C27735Y C28253Y

EPI_ISL_464219
 2020-02-28 2020-06-11
 United Kingdom hCoV-19/England/20099071804/2020
 C241T C3037T C14408T G19406A A23403G

EPI_ISL_464224
 2020-02-28 2020-06-11
 United Kingdom hCoV-19/England/20099072604/2020
 A2480G C2558T G11083T C14805T T21072C G22427R G26144T

EPI_ISL_464228
 2020-02-28 2020-06-11
 United Kingdom hCoV-19/England/20099089504/2020
 G1397A C2881Y G4866A A9514G G11083T A17799G T28688C G29742T

EPI_ISL_469253 MT627325
 2020-02-28 2020-06-16
 China SARS-CoV-2/human/CHN/Shanghai_CH-02/2020
 ATTAAAG1- C14676T C19884T C23525T C28826T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_475545
 2020-02-28 2020-06-23
 Sweden hCoV-19/Sweden/20-04850/2020
 G1397A A7970G G14653A C18788T T28688C G29742T

EPI_ISL_475546
 2020-02-28 2020-06-23
 Sweden hCoV-19/Sweden/20-04851/2020
 G1397A A7970G G14653A C18788T T28688C G29742T

EPI_ISL_475547
 2020-02-28 2020-06-23
 Sweden hCoV-19/Sweden/20-04852/2020
 G1397A A7970G G14653A C18788T T28688C G29742T

EPI_ISL_475836
 2020-02-28 2020-06-25
 Austria hCoV-19/Austria/CeMM0401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10039T G12832A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479803
 2020-02-28 2020-07-01
 Japan hCoV-19/Japan/PG-0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_479829
 2020-02-28 2020-07-01
 Japan hCoV-19/Japan/PG-0076/2020
 ATTAAAGGTTT1- C11752T C19170A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479830
 2020-02-28 2020-07-01
 Japan hCoV-19/Japan/PG-0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479913
 2020-02-28 2020-07-01
 Japan hCoV-19/Japan/PG-0213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- T4402C G5062T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_506950
 2020-02-28 2020-08-02
 South Korea hCoV-19/Korea/KCDC2156/2020
 ATTAAA1- G256T G5572T G11083T C14805T C21575T G26144T C29098T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_506952
 2020-02-28 2020-08-02
 South Korea hCoV-19/Korea/KCDC2158/2020
 ATTA1- G256T G5572T G11083T C14805T C21575T G26144T C29098T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_506953
 2020-02-28 2020-08-02
 South Korea hCoV-19/Korea/KCDC2159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G256T G5572T G11083T C14805T T20177C C21575T G26144T C29098T

EPI_ISL_508933
 2020-02-28 2020-08-04
 France hCoV-19/France/ARA05288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_516084 MT483875
 2020-02-28 2020-05-19
 Italy SARS-CoV-2/human/ITA/73696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C14408T A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516085 MT483881
 2020-02-28 2020-05-19
 Italy SARS-CoV-2/human/ITA/73702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1302Y C3037T C14408T T21765W A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_530024
 2020-02-28 2020-09-10
 Spain hCoV-19/Spain/MD-H12-98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_537558
 2020-02-28 2020-09-16
 United States hCoV-19/USA/CA-UCLA-260/2020
 ATTAAAGGTTTAT1- C313T G1397A C7594A G11083T G20238T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_539497
 2020-02-28 2020-09-18
 Spain hCoV-19/Spain/AN-ISCIII-201273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A436C C8438T A8445T A8456T A8472G G8491A G11083T C14805T G19620A C21263T C23707T C26088T A26108G GAAT29864-

EPI_ISL_539557
 2020-02-28 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201239/2020
 C241T C3037T C8319T C14408T T19597A A19673G A22168G A23403G A26530G

EPI_ISL_539558
 2020-02-28 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201248/2020
 C6449T T16324C TT16478AC G16745A C16792T C22444T C26088T T28144C

GWHAORF01000001
 2020-02-28 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P3.1/2020
 G13617T G26144T

MT126808
 2020-02-28 2020-03-01
 Brazil SARS-CoV-2/human/BRA/SP02/2020
 G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_413021
 2020-02-29 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477757/2020
 C241T C959T C3037T C5812Y G10265A C14408T A23403G T27618C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_413022
 2020-02-29 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477796/2020
 C241T C3037T C14408T A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_413023
 2020-02-29 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C313T C3037T C14408T A22168C A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_413024
 2020-02-29 2020-03-03
 Switzerland hCoV-19/Switzerland/1000477806/2020
 C241T C3037T C13647Y C14408T T19839C A23403G G26227K GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_413213
 2020-02-29 2020-03-04
 Australia hCoV-19/Australia/NSW06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T G1397A G8653T G11083T C24904T T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_413214
 2020-02-29 2020-03-04
 Australia hCoV-19/Australia/NSW07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_413457 MT163718
 2020-02-29 2020-03-05
 United States SARS-CoV-2/human/USA/WA6-UW3/2020
 A1T TAAA3GGTT C20S C8782T C17747T A17858G C18060T T28144C

EPI_ISL_413593
 2020-02-29 2020-03-07
 Luxembourg hCoV-19/Luxembourg/Lux1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C23575T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414015
 2020-02-29 2020-03-10
 Brazil hCoV-19/Brazil/SPBR-06/2020
 ATTA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAA29891-

EPI_ISL_414016
 2020-02-29 2020-03-10
 Brazil hCoV-19/Brazil/SPBR-05/2020
 C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_414414
 2020-02-29 2020-03-12
 Australia hCoV-19/Australia/QLD09/2020
 ATTAAA1- G1397A C11074T G11083T T28688C G29374A G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_414476 MT370904
 2020-02-29 2020-03-12
 United States SARS-CoV-2/human/USA/NY1-PV08001/2020
 G1397A G3242A A9514G G11083T C25214T T28688C G29027T G29742T

EPI_ISL_414626
 2020-02-29 2020-03-15
 France hCoV-19/France/HF1684/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_415128
 2020-02-29 2020-03-16
 Brazil hCoV-19/Brazil/ES-225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T C4423T G11083T C14805T G26144T TGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29793-

EPI_ISL_415129
 2020-02-29 2020-03-16
 United Kingdom hCoV-19/England/20099038206/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_415159
 2020-02-29 2020-03-16
 Belgium hCoV-19/Belgium/BA-02291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1666C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415456
 2020-02-29 2020-03-17
 Switzerland hCoV-19/Switzerland/BE6651/2020
 ATTA1- C241T C3037T C6861T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_415457
 2020-02-29 2020-03-17
 Switzerland hCoV-19/Switzerland/AG7120/2020
 ATTAAAG1- C241T C3037T C14408T A23403G GGG28881AAC T29148C

EPI_ISL_415459
 2020-02-29 2020-03-17
 Switzerland hCoV-19/Switzerland/VD0503/2020
 ATTAAAGGTTT1- C241T C3037T G13503T C14408T A23403G GGG28881AAC

EPI_ISL_416460 MT598640
 2020-02-29 2020-03-22
 United States SARS-CoV-2/human/USA/WA-S5/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_416461 MT598639
 2020-02-29 2020-03-22
 United States SARS-CoV-2/human/USA/WA-S6/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_416465 MT598641
 2020-02-29 2020-03-22
 United States SARS-CoV-2/human/USA/WA-S10/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_416742
 2020-02-29 2020-03-23
 Czech Republic hCoV-19/Czech Republic/ChVir1630/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_417098 MT627307
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S45/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417099 MT627299
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S46/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417100 MT627267
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S47/2020
 C5784T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417101 MT627279
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S48/2020
 C5784T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417108 MT627293
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S55/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417142 MT627233
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S89/2020
 C8782T C15240T C17747T A17858G C18060T C21774T T28144C

EPI_ISL_417143 MT627243
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S90/2020
 C8782T C15240T C17747T A17858G C18060T C21774T T28144C

EPI_ISL_417145 MT627261
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S92/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417146 MT627269
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S93/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417151 MT627248
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S98/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417153 MT627315
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S100/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417159 MT627216
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S106/2020
 C5622T C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417160 MT627245
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S107/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417161 MT627304
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S108/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417168 MT627312
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S115/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417172 MT627242
 2020-02-29 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S119/2020
 C8782T G14638T C17747T A17858G C18060T T28144C

EPI_ISL_417318 MT419841
 2020-02-29 2020-03-25
 United States SARS-CoV-2/human/USA/CA-SCCPHD-UC14/2020
 G29711T

EPI_ISL_417488
 2020-02-29 2020-03-26
 Norway hCoV-19/Norway/1493/2020
 ATTAAAGGTT1- T7876A G11083T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418344
 2020-02-29 2020
 Canada hCoV-19/Canada/ON_PHL2259/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418345
 2020-02-29 2020-02-29
 Canada hCoV-19/Canada/ON_PHL8751/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419556 MT276326
 2020-02-29 2020-04-02
 United States SARS-CoV-2/human/USA/GA_2741/2020
 C241T C3037T C14408T G18898T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419557 MT276327
 2020-02-29 2020-04-02
 United States SARS-CoV-2/human/USA/GA_2742/2020
 C241T C3037T C14408T G18898T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420791 MT304484
 2020-02-29 2020-04-06
 United States SARS-CoV-2/human/USA/NH_0004/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420796 MT304489
 2020-02-29 2020-04-06
 United States SARS-CoV-2/human/USA/TX_2039/2020
 C367Y G1785K C5208Y C9195Y C10747Y G10916K G11083T C12830Y C20703Y T22333Y C23492Y C29353T C29546T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420800 MT304475
 2020-02-29 2020-04-06
 South Korea SARS-CoV-2/human/KOR/BA-ACH_2718/2020
 G5572T G11083T C14805T G26144T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420801 MT304476
 2020-02-29 2020-04-06
 South Korea SARS-CoV-2/human/KOR/BA-ACH_2719/2020
 G5572T G11083T C14805T G26144T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_430135 MT627625
 2020-02-29 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S281/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430160 MT632605
 2020-02-29 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S123/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430273 MT632612
 2020-02-29 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S235/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430281 MT632545
 2020-02-29 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S243/2020
 C8782T C17747T A17858G C18060T T28144C C28957T

EPI_ISL_430441
 2020-02-29 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC1097/2020
 ATTA1- A29881T AAAA29884TGCC A29889G A29891GTGTCTT A29893T A29897GTCTCT AA29902GGCCGGGCGCAGTGGC

EPI_ISL_430442
 2020-02-29 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC1098/2020
 ATTAAAGGTTT1- ATCAGACTCAGACTA23583- AAA29872GTG AA29877TG AAAAA29880TTGTG AAAA29886GCTT AA29892CC AAAAA29897TGGTG A29903CTCCAATTGC

EPI_ISL_430469
 2020-02-29 2020-04-27
 Greece hCoV-19/Greece/127_HPI/2020
 C241T C3037T C14408T A23403G G29868R AAAAAAAAAAAA29892-

EPI_ISL_435583
 2020-02-29 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC104/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_435587
 2020-02-29 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC108/2020
 G14718T C23430T

EPI_ISL_444274 MT479223
 2020-02-29 2020-05-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-21/2020
 ATT1- C1059T G1397A C7521T G11083T A12555C C23606T C23934T T28648C T28688C G29742T

EPI_ISL_452332
 2020-02-29 2020-05-27
 China hCoV-19/Beijing/DT-travelUSA01/2020
 

EPI_ISL_455326
 2020-02-29 2020-05-29
 Spain hCoV-19/Spain/Canarias201939/2020
 C241T C3037T T4579A A6466G G10447A C14408T A23403G G25444T GGG28881AAC CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_455336
 2020-02-29 2020-05-29
 Spain hCoV-19/Spain/LaRioja201277/2020
 C8782T T9477A C14805T G24040T G25979T T28144C C28657T C28863T ATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29677-

EPI_ISL_455350
 2020-02-29 2020-05-29
 Spain hCoV-19/Spain/PaisVasco201385/2020
 A3765G G8353T G8553T C8782T T9477A C14805T T23926G C23934A TA24071CT G25979T T28144C C28657T C28863T T29840C TG29842AT T29846C TA29848GC T29851G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_455351
 2020-02-29 2020-05-29
 Spain hCoV-19/Spain/PaisVasco201388/2020
 T8586A C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_455793
 2020-02-29 2020-06-01
 Malaysia hCoV-19/Malaysia/IMR_WC1114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G677A G15689A T21408C G23607A TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_460084
 2020-02-29 2020-06-05
 Italy hCoV-19/Italy/BS-12256-29Feb/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_461101
 2020-02-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_464212
 2020-02-29 2020-06-11
 United Kingdom hCoV-19/England/20099068604/2020
 G1397A A3263G A8981G G9479T A9514G T9931C G11083T T28688C G29742T

EPI_ISL_464215
 2020-02-29 2020-06-11
 United Kingdom hCoV-19/England/20099069504/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_464217
 2020-02-29 2020-06-11
 United Kingdom hCoV-19/England/20099070104/2020
 C11074T G11083T C14805T T17247C G26144T

EPI_ISL_479804
 2020-02-29 2020-07-01
 Japan hCoV-19/Japan/PG-0036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C11752T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_488388
 2020-02-29 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506951
 2020-02-29 2020-08-02
 South Korea hCoV-19/Korea/KCDC2157/2020
 ATTAAAGGTTTATA1- C16A G256T G5572T G11083T C14805T C21575T G26144T C29098T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_525575
 2020-02-29 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-10131-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1397A G3242A A9514G G11083T C25214T C27657T T28688C G29027T G29742T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_530025
 2020-02-29 2020-09-10
 Spain hCoV-19/Spain/MD-LP100-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3990T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_416741
 2020-02-xx 2020-03-23
 Lithuania hCoV-19/Lithuania/ChVir1632/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_434561
 2020-02-xx 2020-04-22
 Japan hCoV-19/Japan/TKYE6968/2020
 C1997T C8782T C27503T T28144C

EPI_ISL_447608 MT358638 MT539726
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM1/2020
 G3518T G12704T G12797A A17423G T27272C C28854T

EPI_ISL_447609 MT358639
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM3/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_447610 MT358640
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM4/2020
 C241T C3037T A6228G C14408T C16289Y A23403G GGG28881AAC C28961T C29870M

EPI_ISL_447611 MT358641
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM5/2020
 G1440A G2891A A23235G

EPI_ISL_447612 MT358642
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM6/2020
 C241T C3037T A6228G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_447613 MT358643
 2020-02-xx 2020-04-17
 Germany SARS-CoV-2/human/DEU/FFM7/2020
 C241T C3037T C14408T C15324T C23179Y A23403G

EPI_ISL_450210 MT270113
 2020-02-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat16-ChVir1530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTG1- C241T C3037T G6446A A23403G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_450211 MT270114
 2020-02-xx 2020-03-28
 Germany SARS-CoV-2/human/DEU/BavPat15-ChVir1484-ChVir1536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5714G A9019R T15152Y C17410T A17635R T20020Y A23403G C25466T A28549R CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_463220
 2020-02-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25367465/2020
 A187G C241T C1616T C3037T C14408T A23403G C29311T

EPI_ISL_468724 LC553269
 2020-02-xx 2020-06-03
 Japan TKYE6938_2020
 ATTAAAGGTTTATA1- G11083T

EPI_ISL_479792
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A6561G C11752T C19170A TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_479793
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479794
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479795
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C11752T C19170A A29433G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479796
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479801
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479809
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G5008T C8782T G16381A T17877C T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479810
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G5008T C8782T G16381A T17877C T28144C G28878A G29742A ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_479811
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G5008T C8782T T9093C G16381A T17877C C19269T T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479825
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T4351C G11083T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479865
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1458T T7153C GG28903CT CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479866
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G1458T G22632A GG28903CT CTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29803-

EPI_ISL_479867
 2020-02-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G1458T GG28903CT TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_507039
 2020-02-xx 2020-08-03
 South Korea hCoV-19/South Korea/CBNU-nCoV01/2020
 TA3CG -7AGTTGGTT T3086C C6255T C8782T G11083T G17122A T28144C -29865A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

LC542976
 2020-02-xx 2020-04-20
 Japan TKYE6968_2020
 C1997T C8782T C27503T T28144C

MT276597
 2020-02-xx 2020-04-02
 Israel SARS-CoV-2/human/ISR/ISR_JP0320/2020
 ATTAAAGGTTTATACCTTCC1- CA21GG G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_413458 MT163719
 2020-03-01 2020-03-05
 United States SARS-CoV-2/human/USA/WA7-UW4/2020
 C8782T C17747T A17858G C18060T T20281C T28144C

EPI_ISL_413486 MT163720
 2020-03-01 2020-03-05
 United States SARS-CoV-2/human/USA/WA8-UW5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAAC1- A3406C C5784T C8782T C17747T A17858G C18060T C23525T T28144C

EPI_ISL_413572 LR878224
 2020-03-01 2020-03-07
 Netherlands hCoV-19/Netherlands/Haarlem_1363688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T T1666C C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413582 LR878241
 2020-03-01 2020-03-07
 Netherlands hCoV-19/Netherlands/Rotterdam_1363790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- ATG1605- C12621T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413589 LR878358
 2020-03-01 2020-03-07
 Netherlands hCoV-19/Netherlands/Utrecht_1363628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T G2527T C3037T C6428T G11083T C14408T A23403G A25575C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413647
 2020-03-01 2020-03-09
 Portugal hCoV-19/Portugal/CV62/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_413648
 2020-03-01 2020-03-09
 Portugal hCoV-19/Portugal/CV63/2020
 C241T C3037T C14408T A23403G C29144T

EPI_ISL_414023
 2020-03-01 2020-03-10
 Switzerland hCoV-19/Switzerland/VD5615/2020
 ATTAAAGGTTT1- C241T C3037T G13503T C14408T A23403G GGG28881AAC A29903-

EPI_ISL_414524
 2020-03-01 2020-03-13
 United Kingdom hCoV-19/England/200991076/2020
 C241T C3037T C14408T C16949Y A23403G A26530G G28739T

EPI_ISL_415154
 2020-03-01 2020-03-16
 Belgium hCoV-19/Belgium/BM-03012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415155
 2020-03-01 2020-03-16
 Belgium hCoV-19/Belgium/VAG-03013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G A26530G C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415156
 2020-03-01 2020-03-16
 Belgium hCoV-19/Belgium/SH-03014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15504G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415157
 2020-03-01 2020-03-16
 Belgium hCoV-19/Belgium/BC-03016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415158
 2020-03-01 2020-03-16
 Belgium hCoV-19/Belgium/QKJ-03015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415458
 2020-03-01 2020-03-17
 Switzerland hCoV-19/Switzerland/GE8102/2020
 ATTAAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_415581
 2020-03-01 2020-03-18
 Canada hCoV-19/Canada/BC_02421/2020
 G1397A G11083T C19484T T28688C G29742T

EPI_ISL_415703
 2020-03-01 2020-03-19
 Switzerland hCoV-19/Switzerland/TI2045/2020
 ATTAAAG1- C241T C3037T C12357T C14408T A23403G GGG28881AAC

EPI_ISL_416144
 2020-03-01 2020-03-20
 Denmark hCoV-19/Denmark/SSI-03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7392T C14408T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416503
 2020-03-01 2020-03-22
 France hCoV-19/France/B2334/2020
 C3987T G5357T G11083T G20887A G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_417086 MT627244
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S33/2020
 C8782T C17747T A17858G C18060T T28144C T28976C

EPI_ISL_417139 MT627246
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S86/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417140 MT627225
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S87/2020
 C8782T C17747T A17858G C18060T T20281C T28144C

EPI_ISL_417141 MT627287
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S88/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417162 MT627298
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S109/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417171 MT627254
 2020-03-01 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S118/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417236
 2020-03-01 2020-03-25
 United Kingdom hCoV-19/England/20104015302/2020
 C241T C3037T A11755R C14408T C20031M A23403G C27046T GGG28881RRS

EPI_ISL_417418
 2020-03-01 2020-03-25
 Italy hCoV-19/Italy/FVG/ICGEB_S1/2020
 C241T C3037T C14408T A23403G -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_417419
 2020-03-01 2020-03-25
 Italy hCoV-19/Italy/FVG/ICGEB_S5/2020
 AT1- C241T C3037T C14408T A23403G G29009A -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_417421
 2020-03-01 2020-03-25
 Italy hCoV-19/Italy/FVG/ICGEB_S8/2020
 C241T C3037T C14408T A23403G A29874G A29876G A29882G A29890G A29896G AA29899GG -29904GAGAAAAAAGAAAGAAAAAGAAGAAAAGAGAAAAGGGAAAAGGAAGAGGAAAAGGAGAAAGAGATCGGAAGACG

EPI_ISL_417423
 2020-03-01 2020-03-25
 Italy hCoV-19/Italy/FVG/ICGEB_S9/2020
 A1GGA C241T C3037T C14408T A23403G AAAAAAAAAAAAA29891-

EPI_ISL_417486
 2020-03-01 2020-03-26
 Norway hCoV-19/Norway/1538/2020
 ATTAAAG1- G4142R C7390T G11083T C11833T C15495M G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_417487
 2020-03-01 2020-03-26
 Norway hCoV-19/Norway/1539/2020
 ATTAAAGGTTT1- C7390T G11083T C11833T T20197Y G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_417688
 2020-03-01 2020-03-27
 Iceland hCoV-19/Iceland/12/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417736
 2020-03-01 2020-03-27
 Iceland hCoV-19/Iceland/14/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417921 MT525950
 2020-03-01 2020-03-27
 Italy SARS-CoV-2/human/ITA/INMI3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T A23403G TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_418245
 2020-03-01 2020-03-01
 Spain hCoV-19/Spain/CastillaLaMancha201328/2020
 C6449T C8782T C26088T T28144C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418246
 2020-03-01 2020-03-01
 Spain hCoV-19/Spain/CastillaLaMancha201329/2020
 C6449T C8782T G13617T C26088T T28144C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418248
 2020-03-01 2020-03-01
 Spain hCoV-19/Spain/CastillayLeon201323/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418987
 2020-03-01 2020-03-31
 Belgium hCoV-19/Belgium/CG-030158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418999
 2020-03-01 2020-04-01
 Singapore hCoV-19/Singapore/18/2020
 C3426T C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_419210 MT276598
 2020-03-01 2020-04-01
 Israel SARS-CoV-2/human/ISR/ISR_IT0320/2020
 A1GGGGGA C241T C313T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420789 MT304483
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/IL_1375/2020
 C17249Y C28057Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420790 MT304482
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/IL_1293/2020
 AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420794 MT304487
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/OR_5430/2020
 G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420795 MT304488
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/RI_0556/2020
 C241T C3037T C14408T A20268G A23403G C27684T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420797 MT304490
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/TX_2817/2020
 C241T G932A C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420798 MT304491
 2020-03-01 2020-04-06
 United States SARS-CoV-2/human/USA/TX_2967/2020
 C241T C3037T C5663Y C7860Y T11654Y T12122Y C14408T C18877T A23403G G25563T C28315Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_430274 MT632597
 2020-03-01 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S236/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430285 MT632585
 2020-03-01 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S247/2020
 C8782T C17747T A17858G C18060T C20234T T28144C

EPI_ISL_430287 MT632607
 2020-03-01 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S249/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430793
 2020-03-01 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1059Y C3037T G13489R C14408T C17165T A20268R A23403G C23731Y T27299C GGG28881AAC T29148Y TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_431101
 2020-03-01 2020-04-29
 India hCoV-19/India/GMC-RK100/2020
 G9479K C15324T A15477G T21644C C24130T C29303T C29870A

EPI_ISL_437604 MT447174
 2020-03-01 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI206377-NST/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_447330
 2020-03-01 2020-05-17
 Israel hCoV-19/Israel/51137031/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_451308
 2020-03-01 2020-05-24
 Italy hCoV-19/Italy/LO-13075-B/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_451309
 2020-03-01 2020-05-24
 Italy hCoV-19/Italy/LO-13075-N/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_454733 MT531537
 2020-03-01 2020-05-28
 Italy SARS-CoV-2/human/ITA/Siena-1/2020
 AT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_454918
 2020-03-01 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-142/2020
 

EPI_ISL_454955
 2020-03-01 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-205/2020
 

EPI_ISL_454975
 2020-03-01 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-232/2020
 C1060A A7902G G26144T C29518T

EPI_ISL_455337
 2020-03-01 2020-05-29
 Spain hCoV-19/Spain/LaRioja201334/2020
 C8782T T9477A C14805T T17328G A17337T A17346C T21321C T24765C G25979T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_460085
 2020-03-01 2020-06-05
 Italy hCoV-19/Italy/CR-13221-1Mar/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_464227
 2020-03-01 2020-06-11
 United Kingdom hCoV-19/England/20099089404/2020
 G1397A G4866A A9514G G11083T A17799R T28688C G29742T

EPI_ISL_464334
 2020-03-01 2020-06-11
 United Kingdom hCoV-19/England/201040152/2020
 C241T C3037T A11755G C14408T A23403G C27046T GGG28881AAC

EPI_ISL_464335
 2020-03-01 2020-06-11
 United Kingdom hCoV-19/England/201040154/2020
 C241T C3037T A11755R C14408T C20031M A23403G C27046T GGG28881RRS

EPI_ISL_467161
 2020-03-01 2020-06-12
 Spain hCoV-19/Spain/COV001608/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_468764
 2020-03-01 2020-06-17
 Spain hCoV-19/Spain/Logrono_h2285/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_479812
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479823
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C37A C8782T G16381A T17877C T28144C G28878A G29742A TTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29820-

EPI_ISL_479914
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- T4402C G5062T C8782T C23185T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479915
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- T4402C G5062T C8782T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479916
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- T4402C G5062T C8782T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480050
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3179A C6982T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480051
 2020-03-01 2020-07-01
 Japan hCoV-19/Japan/PG-0382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_490012 MT755899
 2020-03-01 2020-07-14
 Saudi Arabia SARS-CoV-2/human/SAU/677/2020
 C241T C2644T C3037T C14408T C18877T A22528G A23403G G23755T G25563T T26038C C26735T

EPI_ISL_497997
 2020-03-01 2020-07-26
 South Korea hCoV-19/Korea/KCDC2096/2020
 ATTAAAGGTTTATACC1- G256T G5572T G11083T C14805T C21575T G26144T C29098T AAAA29900-

EPI_ISL_508934
 2020-03-01 2020-08-04
 France hCoV-19/France/ARA0591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509712 MT844024
 2020-03-01 2020-08-05
 Belize SARS-CoV-2/human/BLZ/CDC-6846/2020
 C241T C313T C3037T C14408T A23403G G25456T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_523503
 2020-03-01 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524474
 2020-03-01 2020-08-28
 Switzerland hCoV-19/Switzerland/AG-1000477914/2020
 C241T C3037T C14408T A23403G GGG28881AAC T29148C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_524475
 2020-03-01 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000477916/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T C14571Y T15071W A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524782
 2020-03-01 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000477909/2020
 ATTAAA1- C241T C3037T C14408T C20762Y A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_530026
 2020-03-01 2020-09-10
 Spain hCoV-19/Spain/MD-LP100-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_535716
 2020-03-01 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00210314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C506T G1397A C9967T G11083T G14335T C22414T T28688C C28854T G29742T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535717
 2020-03-01 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00212401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535718
 2020-03-01 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00213013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539550
 2020-03-01 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-202045/2020
 G11083T C14805T T17247C G26144T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_539551
 2020-03-01 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-202050/2020
 C241T C3037T T5359G C14408T A20268G C23123A A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

MT415320
 2020-03-01 2020-04-29
 India SARS-CoV-2/human/IND/OUMRK100/2020
 AT1- G9479K C15324T A15477G T21644C C24130T C29303T C29870A

EPI_ISL_413566 LR878232
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Blaricum_1364780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413573 LR878238
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Hardinxveld_Giessendam_1364806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C16762T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413577 LR878236
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Naarden_1364774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413580 LR878243
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Oisterwijk_1364072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413583 LR878230
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Rotterdam_1364040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413590 LR878242
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Utrecht_1364066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413591 LR878235
 2020-03-02 2020-03-07
 Netherlands hCoV-19/Netherlands/Zeewolde_1365080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413592
 2020-03-02 2020-03-07
 Taiwan hCoV-19/Taiwan/NTU03/2020
 C241T C3037T C14408T C15857Y C18877T A23403G G25563T G26211K AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_413597
 2020-03-02 2020-03-08
 Australia hCoV-19/Australia/NSW11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_414014
 2020-03-02 2020-03-10
 Brazil hCoV-19/Brazil/SPBR-03/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_414423 LR878258 LR878325
 2020-03-02 2020-03-12
 Netherlands hCoV-19/Netherlands/Gelderland_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414428 LR878231
 2020-03-02 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordBrabant_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T T514C C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414429 LR878251
 2020-03-02 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordBrabant_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414439 LR878260
 2020-03-02 2020-03-12
 Netherlands hCoV-19/Netherlands/Utrecht_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414520
 2020-03-02 2020-03-13
 Germany hCoV-19/Germany/BavPat2/2020
 ATTAAAGG1- G1397A C8880T G9479T A9514G T9931C G11083T T28688C G29742T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414521
 2020-03-02 2020-03-13
 Germany hCoV-19/Germany/BavPat3/2020
 ATTAAAG1- C8782T G23900C T28144C C29095T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_414525
 2020-03-02 2020-03-13
 United Kingdom hCoV-19/England/201040081/2020
 C241T T1927W C3037T C14408T A23403G

EPI_ISL_414577
 2020-03-02 2020-03-13
 Chile hCoV-19/Chile/Talca-1/2020
 AT1GG A4G AGGT6CATC C8782T C17470T G18907T C26088T T28144C G28580T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_414627
 2020-03-02 2020-03-15
 France hCoV-19/France/HF1795/2020
 ATTAAA1- T13A G45C C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_414628
 2020-03-02 2020-03-15
 France hCoV-19/France/HF1805/2020
 C241T C3037T C14408T A23403G A24956G G25563T G29868- A29892C A29894C

EPI_ISL_415584
 2020-03-02 2020-03-18
 Canada hCoV-19/Canada/BC_41851/2020
 C8782T A17858G C18060T T28144C G29736T

EPI_ISL_415650
 2020-03-02 2020-03-18
 France hCoV-19/France/IDF2075/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28857A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_415701
 2020-03-02 2020-03-19
 Switzerland hCoV-19/Switzerland/BS0914/2020
 ATTA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_415702
 2020-03-02 2020-03-19
 Switzerland hCoV-19/Switzerland/SZ1417/2020
 ATTAAAGG1- C241T C3037T G11083T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_416140
 2020-03-02 2020-03-20
 Denmark hCoV-19/Denmark/SSI-05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416153
 2020-03-02 2020-03-20
 Denmark hCoV-19/Denmark/SSI-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A30T A187G C241T C3037T T13402G C14408T T20891G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416412 MT450921
 2020-03-02 2020-03-20
 Australia SARS-CoV-2/human/AUS/VIC04/2020
 ATTAAAGGTT1- C884T G1397A G8653T G11083T C12357T C13506T C26447T T28688C G29742T A29865R

EPI_ISL_416458
 2020-03-02 2020-03-22
 Kuwait hCoV-19/Kuwait/KU12/2020
 ATTAAAGGT1- C884T G1397A A3472G C4999Y G8653T G11083T G27613T T28688C G29742T

EPI_ISL_416467
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/MTR-03021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416468
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/GMH-03022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416470
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/DB-03023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T C3784T T3793C C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416471
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/DBD-03024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416472
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/UMF-03025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416476
 2020-03-02 2020-03-22
 Belgium hCoV-19/Belgium/MTR-03026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416505
 2020-03-02 2020-03-22
 France hCoV-19/France/B2336/2020
 C241T C1059T C3037T C14408T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_416519
 2020-03-02 2020-03-22
 New Zealand hCoV-19/NewZealand/20VR0189/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_416541
 2020-03-02 2020-03-23
 Kuwait hCoV-19/Kuwait/KU09/2020
 A1- C884T G1397A A2239C G8653T G11083T A20059T A25980C T28688C G29742T

EPI_ISL_416542
 2020-03-02 2020-03-23
 Kuwait hCoV-19/Kuwait/KU17/2020
 ATTAAAGGTT1- G1397A G11083T G14653A T28688C G29742T

EPI_ISL_416543
 2020-03-02 2020-03-23
 Kuwait hCoV-19/Kuwait/KU18/2020
 ATTAAAG1- C884T G1397A C2143A T2241Y C7008M G8653T G11083T C13860T C26882Y T28688C G29742T

EPI_ISL_417068 MT627273
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S15/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417072 MT627281
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S19/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417073 MT627316
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S20/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417074 MT627296
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S21/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417075 MT627228
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S22/2020
 G2422A C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417076 MT627231
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S23/2020
 G2422A C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_417077 MT627272
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S24/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417079 MT627262
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S26/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417081 MT627266
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S28/2020
 C8782T C17747T A17858G C18060T G22988A T28144C

EPI_ISL_417082 MT627280
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S29/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417085 MT627241
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S32/2020
 C8782T C17747T A17858G C18060T G22988A T28144C

EPI_ISL_417087 MT627309
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S34/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417088 MT627217
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S35/2020
 T5941G C11095T C17747T A17858G C18060T G26596T T28144C

EPI_ISL_417089 MT627317
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S36/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417112 MT627305
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S59/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417144 MT627283
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S91/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417169 MT627271
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S116/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417170 MT627251
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S117/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417175 MT627249
 2020-03-02 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S122/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417226
 2020-03-02 2020-03-25
 United Kingdom hCoV-19/England/20104004902/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_417233
 2020-03-02 2020-03-25
 United Kingdom hCoV-19/England/20104009002/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417234
 2020-03-02 2020-03-25
 United Kingdom hCoV-19/England/20104009102/2020
 C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC

EPI_ISL_417235
 2020-03-02 2020-03-25
 United Kingdom hCoV-19/England/20104013703/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417427
 2020-03-02 2020-03-25
 Belgium hCoV-19/Belgium/VI-03027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C11412T C14408T A23403G C27046T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_417428
 2020-03-02 2020-03-25
 Belgium hCoV-19/Belgium/FR-03029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C5730T C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_417693
 2020-03-02 2020-03-27
 Iceland hCoV-19/Iceland/25/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417734
 2020-03-02 2020-03-27
 Iceland hCoV-19/Iceland/22/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417800
 2020-03-02 2020-03-27
 Iceland hCoV-19/Iceland/15/2020
 C241T C3037T C14408T C23086T A23403G C27046T GGG28881AAC C29095T

EPI_ISL_417817
 2020-03-02 2020-03-27
 Iceland hCoV-19/Iceland/19/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417840
 2020-03-02 2020-03-27
 Iceland hCoV-19/Iceland/23/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417981
 2020-03-02 2020-03-27
 Spain hCoV-19/Spain/Madrid_R10_33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T9477A C14805T T28144C C28863T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_418207
 2020-03-02 2020-03-29
 Senegal hCoV-19/Senegal/016/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_418241
 2020-03-02 2020-03-29
 Algeria hCoV-19/Algeria/G0638_2264/2020
 C241T C1059T C3037T C10582T C14408T C18115T A23403G G25563T C25777T C26461T C29353T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_418244
 2020-03-02 2020-03-02
 Spain hCoV-19/Spain/Andalucia201373/2020
 ATG1605- C8782T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418253
 2020-03-02 2020-03-02
 Spain hCoV-19/Spain/PaisVasco201382/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418986
 2020-03-02 2020-03-31
 Belgium hCoV-19/Belgium/RS-030257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T T13402G T13408C C14408T A20268G A23403G ACAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_419001
 2020-03-02 2020-04-01
 Singapore hCoV-19/Singapore/19/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- AAAAAAAAAAAA29892-

EPI_ISL_419679
 2020-03-02 2020-04-03
 Spain hCoV-19/Spain/Valencia15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21691T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420037
 2020-03-02 2020-04-04
 Algeria hCoV-19/Algeria/G0860_2262/2020
 C241T C1059T C3037T C5730T C10582T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_420099
 2020-03-02 2020-04-05
 Singapore hCoV-19/Singapore/22/2020
 C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420100
 2020-03-02 2020-04-05
 Singapore hCoV-19/Singapore/23/2020
 ATTA1- C8782T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420784 MT304477
 2020-03-02 2020-04-06
 United States SARS-CoV-2/human/USA/AZ_4811/2020
 C241T C3037T C14408T C16762Y T19839C A23403G G26918K GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420785 MT304478
 2020-03-02 2020-04-06
 United States SARS-CoV-2/human/USA/FL_6318/2020
 C241T C313Y C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420792 MT304485
 2020-03-02 2020-04-06
 United States SARS-CoV-2/human/USA/NH_0008/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420793 MT304486
 2020-03-02 2020-04-06
 United States SARS-CoV-2/human/USA/NY_2929/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_422865 LR878121
 2020-03-02 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9223T G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424855
 2020-03-02 2020-04-13
 United States hCoV-19/USA/FL_7169/2020
 C241T C3037T C8389T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426179
 2020-03-02 2020-04-15
 India hCoV-19/India/c31/2020
 ATTAAAGGTTTAT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_429335
 2020-03-02 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI103/2020
 C884T G1397A A6646G G8653T G11083T G11534A G14371T C18570T T28688C G29742T

EPI_ISL_430202 MT632549
 2020-03-02 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S164/2020
 C8782T G15664A C17747T A17858G C18060T T28144C

EPI_ISL_430276 MT632548
 2020-03-02 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S238/2020
 C8782T T15927G C17747T A17858G C18060T C26936T T28144C

EPI_ISL_430290 MT632518
 2020-03-02 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S252/2020
 C8782T T17475C C17747T A17858G C18060T T28144C G29783T

EPI_ISL_430294 MT632581
 2020-03-02 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S256/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_436050 MT434813
 2020-03-02 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0144NYC/2020
 A11217G C17440T G29711T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_437663
 2020-03-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-248/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_437996
 2020-03-02 2020-05-12
 Austria hCoV-19/Austria/CeMM0148/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_452218
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM1/2020
 G3518T G12704T G12797A A17423G T27272C C28854T

EPI_ISL_452219
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM3/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_452220
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM4/2020
 C241T C3037T A6228G C14408T C16289Y A23403G GGG28881AAC C28961T C29870M

EPI_ISL_452221
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM5/2020
 G1440A G2891A A23235G

EPI_ISL_452222
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM6/2020
 C241T C3037T A6228G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_452223
 2020-03-02 2020-05-27
 Germany hCoV-19/Germany/FrankfurtFFM7/2020
 C241T C3037T C14408T C15324T C23179Y A23403G

EPI_ISL_454868
 2020-03-02 2020-05-29
 Sweden hCoV-19/Sweden/20-50052/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454869
 2020-03-02 2020-05-29
 Sweden hCoV-19/Sweden/20-50053/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454904
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-122/2020
 

EPI_ISL_454905
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-124/2020
 T28144C

EPI_ISL_454906
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-125/2020
 C8529T C17690T

EPI_ISL_454907
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-126/2020
 A4884G T28144C C29095T

EPI_ISL_454908
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-127/2020
 T25043C

EPI_ISL_454909
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-130/2020
 C26447G

EPI_ISL_454910
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-131/2020
 A9243G G11083T

EPI_ISL_454938
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-172/2020
 AAGATTTTC729- G10412T T25382C

EPI_ISL_454942
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-181/2020
 G3013T

EPI_ISL_454943
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-182/2020
 A9243G C9598T C11074T C14183T C16376T

EPI_ISL_454968
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-223/2020
 G26144T

EPI_ISL_454985
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-098/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G26144T

EPI_ISL_454986
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-099/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G1397A G3328T T7237C A9243G C10789T G11083T A14651C

EPI_ISL_454987
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-100/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G1397A G29742T

EPI_ISL_454988
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-102/2020
 G1397A A9243G C10789T G11083T G29742T

EPI_ISL_454989
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-104/2020
 C8782T T18603C C23220T C27925T T28144C C29095T

EPI_ISL_454990
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-107/2020
 G1397A G11083T G29742T A29776T

EPI_ISL_454991
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-108/2020
 C203T G1397A C3096T A9243G C10789T C11074T G11083T C12459T C25046T G29742T

EPI_ISL_454994
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-114/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11897T T13243C T14684C

EPI_ISL_454997
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-117/2020
 G1264T G1397A G3328T T7237C A9243G C10789T C11074T G11083T A14651C G29742T

EPI_ISL_455001
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-266/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C11897T T13243C C13799T T14684C

EPI_ISL_455005
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-270/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C

EPI_ISL_455014
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-283/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C8782T T13243C A19887G C29095T G29742T

EPI_ISL_455327
 2020-03-02 2020-05-29
 Spain hCoV-19/Spain/CastillaLaMancha201306/2020
 C241T C3037T C14408T A23403G C29144T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_455363
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-123/2020
 TG14865- C23286- T25382C C26447G C28422A

EPI_ISL_455364
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-129/2020
 C19154T C26447G T28144C T28250G A28254- C29095T G29179T

EPI_ISL_455369
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-145/2020
 T383C C8529T TG14865- T25382C

EPI_ISL_455371
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-147/2020
 T20965- C25041A

EPI_ISL_455399
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-101/2020
 C3168A C6990T CC18109-T G21724T

EPI_ISL_455400
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-103/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G11083T C11173T C13019T T13243C C17130T CC18109-T G21004A

EPI_ISL_455401
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-105/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- CC18109-T T22549C

EPI_ISL_455402
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-106/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C TG14865- CC18109-T

EPI_ISL_455403
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-110/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- C8481T T14749C CC18109-T

EPI_ISL_455404
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-111/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G12761A T13243C A15201T CC18109-T C21587T G26144T C26222T C26344T

EPI_ISL_455405
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-112/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T4873C AAG12147- CC18109-T G21004A

EPI_ISL_455406
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-118/2020
 C8782T G11230T C14408A A15668G T18603C A19887G A26161- C27925T T28144C C29095T

EPI_ISL_455407
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-119/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C C15857T CC18109-T C21711T

EPI_ISL_455408
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM-121/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- CC18109-T C21707T

EPI_ISL_455411
 2020-03-02 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-277/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G914- T13243C T14684C CC18109-T A26098T C26139T C26198T G26475T

EPI_ISL_455848
 2020-03-02 2020-06-01
 Sweden hCoV-19/Sweden/20-50056/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_457706
 2020-03-02 2020-06-02
 Oman hCoV-19/Oman/RESP-20-1189/2020
 C884T T1209C G1397A G8653T C17069T G27561T T28688C C29250T G29742T

EPI_ISL_459909
 2020-03-02 2020-06-05
 China hCoV-19/Harbin/HRB-26/2020
 C9491T C25603T AAAAAAAAAAAA29892-

EPI_ISL_461113
 2020-03-02 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8139T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_464275
 2020-03-02 2020-06-11
 United Kingdom hCoV-19/England/20102003804/2020
 A2480G C2558T G11083T C14805T T21072C A23570R G26144T

EPI_ISL_464347
 2020-03-02 2020-06-11
 United Kingdom hCoV-19/England/201041387/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC

EPI_ISL_468763
 2020-03-02 2020-06-17
 Spain hCoV-19/Spain/Logrono_h2286/2020
 A6616R C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_475551
 2020-03-02 2020-06-23
 Sweden hCoV-19/Sweden/20-08067/2020
 G1397A C17550T A18425C T28688C G29742T

EPI_ISL_479821
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T G16381A T17877C T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479831
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479832
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479833
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479979
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0303/2020
 ATTAAAGGTTTA1- G3179A C6982T C8782T C25904T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479980
 2020-03-02 2020-07-01
 Japan hCoV-19/Japan/PG-0304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G3179A C6982T C8782T C25904T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488371
 2020-03-02 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488788
 2020-03-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-281050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488800
 2020-03-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-281041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890Y C14408T A23403G C25350T G29777R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500085
 2020-03-02 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4D52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC C29421T

EPI_ISL_500105
 2020-03-02 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A50C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1514T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_508935
 2020-03-02 2020-08-04
 France hCoV-19/France/ARA0592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_524476
 2020-03-02 2020-08-28
 Switzerland hCoV-19/Switzerland/AG-1000478260/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_524478
 2020-03-02 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000478320/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC G29422T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_529065
 2020-03-02 2020-09-10
 Peru hCoV-19/Peru/LIM-UPCH-0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4002T T4092G A7479G G10097A C13297T C13536T C14408T A23403G C23731T G27478T GGG28881AAC G29179T TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_530027
 2020-03-02 2020-09-10
 Spain hCoV-19/Spain/MD-LP101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1722T A1866G C3037T G13240A C14408T G18271A A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539556
 2020-03-02 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-34696/2020
 C241T C3037T C14408T A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

GWHAORO01000001
 2020-03-02 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-CP2/2020
 C241T C3037T C14408T T14950C A23403G

MT292574
 2020-03-02 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21691T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT325565
 2020-03-02 2020-04-10
 United States SARS-CoV-2/human/USA/FL_7169/2020
 C241T C3037T C8389T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_413489
 2020-03-03 2020-03-05
 Italy hCoV-19/Italy/UniSR1/2020
 ATTAAA1- A187G C241T C3037T A6956C C14408T A23403G AAAAAAAAAA29894-

EPI_ISL_413563
 2020-03-03 2020-03-07
 United States hCoV-19/USA/WA12-UW8/2020
 ATTAAA1- C8782T C9430A C17747T A17858G C18060T T28144C

EPI_ISL_413579 LR878240
 2020-03-03 2020-03-07
 Netherlands hCoV-19/Netherlands/Nootdorp_1364222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413584 LR878237
 2020-03-03 2020-03-07
 Netherlands hCoV-19/Netherlands/Rotterdam_1364740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413587 LR878233
 2020-03-03 2020-03-07
 Netherlands hCoV-19/Netherlands/Tilburg_1364286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_413600
 2020-03-03 2020-03-09
 Australia hCoV-19/Australia/NSW14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1397A G4255A G11083T A20047G T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_413602
 2020-03-03 2020-03-09
 Finland hCoV-19/Finland/FIN03032020A/2020
 C241T C3037T C14408T G22865T A23403G C29585T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_413603
 2020-03-03 2020-03-09
 Finland hCoV-19/Finland/FIN03032020B/2020
 ATT1- G11083T C14805T G26144T G29405C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_413604
 2020-03-03 2020-03-09
 Finland hCoV-19/Finland/FIN03032020C/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807C

EPI_ISL_414433 LR878257
 2020-03-03 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordHolland_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414435 LR878245
 2020-03-03 2020-03-12
 Netherlands hCoV-19/Netherlands/Utrecht_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C15407T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414443 LR878259
 2020-03-03 2020-03-12
 Netherlands hCoV-19/Netherlands/Utrecht_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414445 LR878253
 2020-03-03 2020-03-12
 Netherlands hCoV-19/Netherlands/ZuidHolland_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T G4255T C5284T C14408T T16456G C20051T A23403G C24117T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414446 LR878249
 2020-03-03 2020-03-12
 Netherlands hCoV-19/Netherlands/ZuidHolland_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414526
 2020-03-03 2020-03-13
 United Kingdom hCoV-19/England/201040141/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_414545 LR878310
 2020-03-03 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3145T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414549 LR878305
 2020-03-03 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordHolland_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3145T C14408T T19839C A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414562 LR878311
 2020-03-03 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2507T C3037T G3145T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414563 LR878312
 2020-03-03 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G3145T C12621T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414579
 2020-03-03 2020-03-13
 Chile hCoV-19/Chile/Santiago-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C1884Y C8782T T9477A C14805T G25979T T28144C C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_414586
 2020-03-03 2020-03-13
 Ireland hCoV-19/Ireland/Limerick-19934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414587
 2020-03-03 2020-03-13
 Ireland hCoV-19/Ireland/Limerick-19935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414629
 2020-03-03 2020-03-15
 France hCoV-19/France/HF1870/2020
 C241T C3037T C14408T C15324T C16428T A23403G T29867-

EPI_ISL_414630
 2020-03-03 2020-03-15
 France hCoV-19/France/HF1871/2020
 C241T C1059T C2003T C3037T C10582T C14408T A23403G G25563T C27059T

EPI_ISL_415153
 2020-03-03 2020-03-16
 Belgium hCoV-19/Belgium/VLM-03011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G A26530G C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415646
 2020-03-03 2020-03-18
 Italy hCoV-19/Denmark/SSI-101/2020
 -TA2AGAGAACAGATCTACAAGAGACG G7A TA11GGTTGGTTTGT TCCC18GGGA C241T C3037T C14408T A23403G C23575T G23587C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_415648
 2020-03-03 2020-03-18
 Italy hCoV-19/Denmark/SSI-104/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C1302T C3037T C14408T C18656T A23403G G25563T T29858G G29861A G29864A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_416028
 2020-03-03 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-07/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416033
 2020-03-03 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-11/2020
 G1440A G2891A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416141
 2020-03-03 2020-03-20
 Denmark hCoV-19/Denmark/SSI-09/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_416466 MT598642
 2020-03-03 2020-03-22
 United States SARS-CoV-2/human/USA/WA-S11/2020
 C8782T T15927G C17747T A17858G C18060T C26936T T28144C

EPI_ISL_416469
 2020-03-03 2020-03-22
 Belgium hCoV-19/Belgium/SN-03031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T T3793C C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416475
 2020-03-03 2020-03-22
 Belgium hCoV-19/Belgium/DBA-03032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416488
 2020-03-03 2020-03-22
 Poland hCoV-19/Poland/PL_P1/2020
 G198A G1440A G2891A

EPI_ISL_416506
 2020-03-03 2020-03-22
 France hCoV-19/France/B2337/2020
 C241T C1059T C3037T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416730
 2020-03-03 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFCB1/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_416731
 2020-03-03 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFCC0/2020
 C241T C3037T C14408T G20434T A23403G C25350T C26858T

EPI_ISL_416732
 2020-03-03 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFCDF/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_416740
 2020-03-03 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFD54/2020
 T514C

EPI_ISL_416746
 2020-03-03 2020-03-23
 France hCoV-19/France/Valence_425/2020
 C241T C3037T C14408T G18266T G22199T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417065 MT627303
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S12/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417066 MT627285
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S13/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417069 MT627265
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S16/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417070 MT627292
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S17/2020
 C8782T C17747T A17858G C18060T C23202T T28144C

EPI_ISL_417071 MT627237
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S18/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417104 MT627311
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S51/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417105 MT627255
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S52/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417106 MT627308
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S53/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417110 MT627284
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S57/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417115 MT627221
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S62/2020
 C8782T C9430A C17747T A17858G C18060T T28144C

EPI_ISL_417117 MT627223
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S64/2020
 C8782T T16701C C17747T A17858G C18060T T28144C

EPI_ISL_417118 MT627297
 2020-03-03 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S65/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417227
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20104007503/2020
 C241T C3037T C14408T A23403G

EPI_ISL_417231
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20104008802/2020
 C241T C3037T C7528T C14408T C17762T A23403G C25350T

EPI_ISL_417240
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20106004803/2020
 C241T C3037T C14408T G20434T A23403G C25350T C26858T

EPI_ISL_417244
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20106005403/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29256T

EPI_ISL_417246
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20106145903/2020
 C2091T G11083T C14805T T17247C G26144T

EPI_ISL_417248
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20108003302/2020
 T2C C241T C3037T C14408T A23403G G24077T

EPI_ISL_417256
 2020-03-03 2020-03-25
 United Kingdom hCoV-19/England/20108007302/2020
 C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC

EPI_ISL_417383
 2020-03-03 2020-03-25
 Australia hCoV-19/Australia/NSW15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T G11083T C18928T T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417429
 2020-03-03 2020-03-25
 Belgium hCoV-19/Belgium/MMJ-03034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_417430
 2020-03-03 2020-03-25
 Belgium hCoV-19/Belgium/RT-03035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C575T C3037T C14408T A23403G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_417491
 2020-03-03 2020-03-26
 Italy hCoV-19/Italy/UnivPM1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C14408T A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_417773
 2020-03-03 2020-03-27
 Iceland hCoV-19/Iceland/30/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29195T

EPI_ISL_417842
 2020-03-03 2020-03-27
 Iceland hCoV-19/Iceland/31/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417979
 2020-03-03 2020-03-27
 Spain hCoV-19/Spain/Madrid_R2_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T A9204G A11636T A21352G T25356C T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417980
 2020-03-03 2020-03-27
 Spain hCoV-19/Spain/Madrid_R5_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T12364A A19719T C26088T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417986
 2020-03-03 2020-03-28
 Portugal hCoV-19/Portugal/PT0001b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C27046T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417987
 2020-03-03 2020-03-28
 Portugal hCoV-19/Portugal/PT0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418010
 2020-03-03 2020-03-28
 Portugal hCoV-19/Portugal/PT0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418209
 2020-03-03 2020-03-29
 Senegal hCoV-19/Senegal/026/2020
 T3C C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T T28297C

EPI_ISL_418249
 2020-03-03 2020-03-03
 Spain hCoV-19/Spain/CastillayLeon201372/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_418824
 2020-03-03 2020-03-31
 Canada hCoV-19/Canada/BC_4078583/2020
 G1397A G11083T T28688C G29742T

EPI_ISL_419234
 2020-03-03 2020-04-01
 Spain hCoV-19/Spain/LaRioja201575/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_419240
 2020-03-03 2020-04-01
 Spain hCoV-19/Spain/PaisVasco201607/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T CTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29788-

EPI_ISL_420543 MT577009
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/763/2020
 AT1- C241T C3037T C4809T C8782T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_420545 MT577010
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/770/2020
 ATTAAAGGT1- C241T C3037T C4809T C8782T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_420547 MT577011
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/772/2020
 ATTA1- C241T C3037T C4809T C14408T A23403G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_420549 MT577012
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/773/2020
 ATTAAAGGTTTAT1- C241T C3037T C4809T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_420551 MT577013
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/777/2020
 ATTAAAGGTTTATAC1- C241T C3037T C4809T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_420553 MT577014
 2020-03-03 2020-04-06
 India SARS-CoV-2/human/IND/781/2020
 A1- A4T C241T C3037T C4809T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_420555
 2020-03-03 2020-04-06
 India hCoV-19/India/c32/2020
 ATTAAAGGTTTAT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_420786 MT304480
 2020-03-03 2020-04-06
 United States SARS-CoV-2/human/USA/GA_1320/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420787 MT304479
 2020-03-03 2020-04-06
 United States SARS-CoV-2/human/USA/GA_1299/2020
 C241T C3037T C14408T A23403G T25554G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_422825 LR878152
 2020-03-03 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422898 LR877782
 2020-03-03 2020-04-11
 Netherlands hCoV-19/Netherlands/Utrecht_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_425224
 2020-03-03 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10495-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_425795
 2020-03-03 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425807
 2020-03-03 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12455Y C14408T A23403G C25350T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426025
 2020-03-03 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10496-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C12396T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426026
 2020-03-03 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10528-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28808T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_428683
 2020-03-03 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_13/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3037T C8782T A20268G A23403G C26088T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_429447
 2020-03-03 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI29/2020
 C241T C3037T C14408T G20060T A23403G GGG28881AAC

EPI_ISL_430118 MT627609
 2020-03-03 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S264/2020
 T6178C C8782T C17747T A17858G C18060T G25993A A27525G T28144C

EPI_ISL_430271 MT632558
 2020-03-03 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S233/2020
 C8782T C17747T A17858G C18060T C20234T T28144C

EPI_ISL_430288 MT632606
 2020-03-03 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S250/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430837
 2020-03-03 2020-04-28
 Thailand hCoV-19/Thailand/TNIC-1889/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T G18938A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_434697
 2020-03-03 2020-05-01
 Thailand hCoV-19/Thailand/NIH-1889/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T G18938A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_437997
 2020-03-03 2020-05-12
 Austria hCoV-19/Austria/CeMM0149/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_437998
 2020-03-03 2020-05-12
 Austria hCoV-19/Austria/CeMM0150/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_437999
 2020-03-03 2020-05-12
 Austria hCoV-19/Austria/CeMM0153/2020
 C241T C3037T C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438001
 2020-03-03 2020-05-12
 Italy hCoV-19/Austria/CeMM0155/2020
 C241T C3037T G3994T C14408T A23403G AAAAAAAAAAAAAAAA29888-

EPI_ISL_438002
 2020-03-03 2020-05-12
 Italy hCoV-19/Austria/CeMM0156/2020
 C241T C3037T G3994T C14408T T22521K A23403G AAAAAAAA29896-

EPI_ISL_452099
 2020-03-03 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-97/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_452116 MT512444
 2020-03-03 2020-05-26
 United States SARS-CoV-2/human/USA/NJ-CDC-3036/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452124 MT512424
 2020-03-03 2020-05-26
 United States SARS-CoV-2/human/USA/NC-CDC-6999/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452780
 2020-03-03 2020-05-27
 Spain hCoV-19/Spain/COV000678/2020
 C8782T T9477A C14805T C17285T G25979T T28144C C28657T C28863T

EPI_ISL_454447
 2020-03-03 2020-05-28
 Sweden hCoV-19/Sweden/20-08060/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454448
 2020-03-03 2020-05-28
 Sweden hCoV-19/Sweden/20-08071/2020
 C241T C1190T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454449
 2020-03-03 2020-05-28
 Sweden hCoV-19/Sweden/20-08072/2020
 C241T C3037T C9693T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454450
 2020-03-03 2020-05-28
 Sweden hCoV-19/Sweden/20-08073/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454755
 2020-03-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10006/2020
 ATTAAAGGTTTAT1- G1397A C4755T G11083T A18800T T28688C G29742T AAAAAA29898-

EPI_ISL_454870
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50055/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454872
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50089/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_454873
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50090/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_454878
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50099/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_454879
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50101/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454880
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50104/2020
 C241T C3037T C14408T A23403G

EPI_ISL_454881
 2020-03-03 2020-05-29
 Sweden hCoV-19/Sweden/20-50107/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454913
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-136/2020
 A9243G G11083T

EPI_ISL_454914
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-137/2020
 C23538T T25382C

EPI_ISL_454917
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH1-141/2020
 T711A C10594T

EPI_ISL_454947
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-191/2020
 C1707A T28144C

EPI_ISL_455324
 2020-03-03 2020-05-29
 Spain hCoV-19/Spain/Andalucia201649/2020
 C241T C3037T C8782T A20655T AA20657TG C20660A

EPI_ISL_455341
 2020-03-03 2020-05-29
 Spain hCoV-19/Spain/LaRioja201570/2020
 C8782T T9477A C14805T G18268A G25979T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_455342
 2020-03-03 2020-05-29
 Spain hCoV-19/Spain/LaRioja201572/2020
 A29T T87G T10849C G25979T G27915A T28144C TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_455343
 2020-03-03 2020-05-29
 Spain hCoV-19/Spain/LaRioja201576/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_455372
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH2-151/2020
 C8529T G10412T TG14865-

EPI_ISL_455377
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-177/2020
 G18412- C22482T

EPI_ISL_455382
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-187/2020
 C2980A G3013T A3298T C14768A T20965- C22482T

EPI_ISL_455383
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-188/2020
 C11481A TG14865- C27925A

EPI_ISL_455410
 2020-03-03 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-275/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C CC18109-T

EPI_ISL_455596
 2020-03-03 2020-06-01
 Australia hCoV-19/Australia/VPRL004/2020
 G1397A G11083T A18425C G26730T T28688C C28868A G29742T

EPI_ISL_455853
 2020-03-03 2020-06-01
 Sweden hCoV-19/Sweden/20-50100/2020
 C241T C3037T C5730T C14408T A23403G G25456T GGG28881AAC

EPI_ISL_455854
 2020-03-03 2020-06-01
 Sweden hCoV-19/Sweden/20-50103/2020
 C241T C1190T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455855
 2020-03-03 2020-06-01
 Sweden hCoV-19/Sweden/20-50105/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_456190
 2020-03-03 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1109/2020
 C3096T G11083T C12781T G13627T C14805T C15540T C15656T G17944T A21863G G26144T A28338G

EPI_ISL_459965
 2020-03-03 2020-06-05
 Morocco hCoV-19/Morocco/6887/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_461114
 2020-03-03 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_464294
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201021555/2020
 C11074T G11083T C14805T T17247C G22468K G26144T

EPI_ISL_464295
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201021557/2020
 G11083T C14805T T17247C G26144T C26353Y C28253Y

EPI_ISL_464296
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201021559/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_464318
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201040073/2020
 C241T T1927W C3037T C14408T A19304R A23403G

EPI_ISL_464323
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201040079/2020
 C241T T1456Y C3037T T7090K C14408T G15829K G20098K C22530Y A23403G G24077K

EPI_ISL_464356
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060004/2020
 C241T C3037T C14408T G20434T A23403G C25350T C26858T

EPI_ISL_464361
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060015/2020
 C241T C3037T G13348K C14408T A23403G C27046T GGG28881AAC

EPI_ISL_464363
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060018/2020
 T514C ATG1605- C16375Y

EPI_ISL_464365
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060020/2020
 C241T C3037T C14408T C20031A A22538R A23403G C27046T GGG28881AAC

EPI_ISL_464372
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060035/2020
 C241T C3037T T9668Y C14408T A23403G C25350T

EPI_ISL_464383
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060052/2020
 C241T C1625Y C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_464401
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201060300/2020
 A1305T C2976Y G3774R C10408Y G11083T G26144T

EPI_ISL_464441
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201080049/2020
 C241T C3037T C4999Y C14408T A23403G GGG28881AAC

EPI_ISL_464443
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201080051/2020
 A113G C241T C3037T C14408T A23403G C26942T GGG28881AAC

EPI_ISL_464452
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201080064/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_464461
 2020-03-03 2020-06-11
 United Kingdom hCoV-19/England/201080078/2020
 C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC G29000K

EPI_ISL_469075
 2020-03-03 2020-06-17
 Sweden hCoV-19/Sweden/20-50106/2020
 C241T C3037T C14408T C21855T A23403G C27046T GGG28881AAC

EPI_ISL_479813
 2020-03-03 2020-07-01
 Japan hCoV-19/Japan/PG-0050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479814
 2020-03-03 2020-07-01
 Japan hCoV-19/Japan/PG-0051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- A6561G C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479890
 2020-03-03 2020-07-01
 Japan hCoV-19/Japan/PG-0182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T C10615T G16381A T17877C T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480052
 2020-03-03 2020-07-01
 Japan hCoV-19/Japan/PG-0383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480053
 2020-03-03 2020-07-01
 Japan hCoV-19/Japan/PG-0384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_482672
 2020-03-03 2020-07-05
 Singapore hCoV-19/Singapore/24nan/2020
 A23359G

EPI_ISL_482746 MT705205
 2020-03-03 2020-07-04
 Netherlands SARS-CoV-2/human/NLD/Leiden-0001/2020
 ATTAAAGGTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_483066
 2020-03-03 2020-07-07
 Australia hCoV-19/Australia/SAP098/2020
 A1- G1397A G11083T A18425C G26730T T28688C C28868A G29742T

EPI_ISL_488202
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F5ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A113G C241T C3037T C14408T A23403G C26942T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488219
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F5A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488244
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F5B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488450
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F5DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A113G C241T C3037T C14408T A23403G C26942T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488760
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-281023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488803
 2020-03-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-28106F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3994T C14408T G15910T TTA21991- A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492397
 2020-03-03 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1854521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7528T C14408T C17762T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493139 MT781414
 2020-03-03 2020-07-21
 Thailand SARS-CoV-2/human/THA/MUMT-4/2020
 ATTAAAGGT1- A1515G C9223T C14805T A17799G T21765G G26144T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_500097
 2020-03-03 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4F10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC C29870A

EPI_ISL_524477
 2020-03-03 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000478309/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_524479
 2020-03-03 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000478554/2020
 C241T C3037T C14408T C21178T A23403G C24026T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_524482
 2020-03-03 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000478518/2020
 C241T C3037T C14408T C14708Y A23403G GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_524484
 2020-03-03 2020-08-28
 Switzerland hCoV-19/Switzerland/SZ-1000478990/2020
 ATTAAA1- C241T C3037T C4777T C14408T C23086T A23403G C27046T A27764C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_530028
 2020-03-03 2020-09-10
 Spain hCoV-19/Spain/MD-LP102-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C14404T C14703T C19983T A20239G C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_537403
 2020-03-03 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_537811
 2020-03-03 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C26088T G27915A T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539500
 2020-03-03 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201435/2020
 G11071C G11083T C24382T

EPI_ISL_539549
 2020-03-03 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-202044/2020
 C241T C3037T G8330C G8470A C14408T A22496G A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_540998
 2020-03-03 2020-09-22
 South korea hCoV-19/South Korea/IHC1215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C3168T C8090T G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAA29888-

EPI_ISL_540999
 2020-03-03 2020-09-22
 South korea hCoV-19/South Korea/IHC1217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- C3168T C8090T G11083T C14805T T17247C G26144T G27470A AAAAAAAAAAAAAAAA29888-

MT873497
 2020-03-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00002/2020
 ATTAAA1- G11083T C14805T T17247C G26144T G28895T

EPI_ISL_413598
 2020-03-04 2020-03-08
 Australia hCoV-19/Australia/NSW12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T C24381T G28457A T28688C C29627T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_413599
 2020-03-04 2020-03-08
 Australia hCoV-19/Australia/NSW13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1397A C2113T G11083T C18928T C26213Y T28688C G29374A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_414017
 2020-03-04 2020-03-10
 Brazil hCoV-19/Brazil/SPBR-04/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_414027
 2020-03-04 2020-03-10
 United Kingdom hCoV-19/Scotland/CVR05/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_414045
 2020-03-04 2020-03-11
 Brazil hCoV-19/Brazil/RJ-314/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T A23403G GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_414363
 2020-03-04 2020-03-11
 United States hCoV-19/USA/WA-UW15/2020
 C8782T C17747T A17858G C18060T C23758T T28144C G29861A G29864A

EPI_ISL_414487
 2020-03-04 2020-03-12
 Ireland hCoV-19/Ireland/COR-20134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414500
 2020-03-04 2020-03-12
 United Kingdom hCoV-19/England/Sheff01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414578
 2020-03-04 2020-03-13
 Chile hCoV-19/Chile/Talca-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17470T G18907K C26088T T28144C G28580T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_414597
 2020-03-04 2020-03-14
 United States hCoV-19/USA/WA-UW28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- T150C T153G T5860C C8782T C17747T A17858G C18060T T28144C

EPI_ISL_414631
 2020-03-04 2020-03-15
 France hCoV-19/France/GE1973/2020
 C241T C3037T C14408T A23403G

EPI_ISL_414632
 2020-03-04 2020-03-15
 France hCoV-19/France/GE1977/2020
 G210T C241T C2416T C3037T C14408T A23403G C24378T G25563T G29543T A29876C

EPI_ISL_414633
 2020-03-04 2020-03-15
 France hCoV-19/France/IDF1980/2020
 C241T C2416T C3037T C14408T A23403G G25563T AATGA29865CCCAT A29871T A29887G

EPI_ISL_414634
 2020-03-04 2020-03-15
 France hCoV-19/France/HF1986/2020
 T18C A26- C28T C241T C1059T C3037T C5348T A8651G C14408T A23403G C25046G G25563T A29866C

EPI_ISL_414635
 2020-03-04 2020-03-15
 France hCoV-19/France/HF1988/2020
 G105T C241T C1059T C3037T C14408T A20766G A23403G G25563T

EPI_ISL_414636
 2020-03-04 2020-03-15
 France hCoV-19/France/HF1989/2020
 A26- C28T G105T C241T C1059T C3037T C14408T A15213G A20766G A23403G G25563T G26199T

EPI_ISL_414637
 2020-03-04 2020-03-15
 France hCoV-19/France/HF1993/2020
 T13A C241T C2416T C3037T C14408T C19884T A23403G G25563T A29888G A29892G A29896G A29900G

EPI_ISL_414638
 2020-03-04 2020-03-15
 France hCoV-19/France/HF1995/2020
 C241T C2416T C3037T T12722C C14408T A23403G G25563T

EPI_ISL_414646
 2020-03-04 2020-03-15
 Finland hCoV-19/Finland/FIN-266/2020
 C241T C3037T C14408T A23403G A26530G GTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29808-

EPI_ISL_415105
 2020-03-04 2020-03-16
 Brazil hCoV-19/Brazil/BA-312/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C14408T A23403G A26945T GGG28881AAC GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_415151 MT370842
 2020-03-04 2020-03-16
 United States SARS-CoV-2/human/USA/NY2-PV08100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_415629
 2020-03-04 2020-03-18
 United Kingdom hCoV-19/Scotland/EDB004/2020
 C241T C3037T C14408T A23403G

EPI_ISL_415704
 2020-03-04 2020-03-19
 Switzerland hCoV-19/Switzerland/BE2536/2020
 ATTAAAGG1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_416029
 2020-03-04 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-08/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416031
 2020-03-04 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-09/2020
 C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416032
 2020-03-04 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-10/2020
 C14805T T17247C G26144T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416034
 2020-03-04 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-12/2020
 C241T C3037T G10265A G11083T C14408T A23403G GGG28881AAC G29868T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416487 MT233523
 2020-03-04 2020-03-22
 Spain SARS-CoV-2/human/ESP/Valencia8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416494
 2020-03-04 2020-03-22
 France hCoV-19/France/N2223/2020
 A187G C241T C3037T C14408T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416747
 2020-03-04 2020-03-23
 France hCoV-19/France/Lyon_487/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_416748
 2020-03-04 2020-03-23
 France hCoV-19/France/Lyon_508/2020
 C241T C1059T C2306T C3037T C14408T C15952T G20134A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416749
 2020-03-04 2020-03-23
 France hCoV-19/France/Valence_532/2020
 C241T A618G C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416752
 2020-03-04 2020-03-23
 France hCoV-19/France/Clermont-Ferrand_650/2020
 C241T C3037T C14408T C15324T A23403G A23720G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416994
 2020-03-04 2020-03-23
 Spain hCoV-19/Spain/CastillayLeon201437/2020
 C8782T T9477A C14805T C18582T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_417010
 2020-03-04 2020-03-23
 Spain hCoV-19/Spain/Madrid201442/2020
 C241T C3037T C14408T A20268G A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_417091 MT627291
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S38/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417092 MT627300
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S39/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417102 MT627260
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S49/2020
 C8782T C17747T A17858G C18060T T28144C C29250T

EPI_ISL_417116 MT627306
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S63/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417120 MT627240
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S67/2020
 C8782T C17747T A17858G C18060T T28144C A28709T

EPI_ISL_417121 MT627277
 2020-03-04 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S68/2020
 C8782T C17747T A17858G C18060T T28144C A28709T

EPI_ISL_417222
 2020-03-04 2020-03-25
 United Kingdom hCoV-19/England/20104003002/2020
 C241T C3037T C14408T A23403G C29632Y

EPI_ISL_417232
 2020-03-04 2020-03-25
 United Kingdom hCoV-19/England/20104008902/2020
 C241T C1514T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417255
 2020-03-04 2020-03-25
 United Kingdom hCoV-19/England/20108007002/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_417264
 2020-03-04 2020-03-25
 United Kingdom hCoV-19/England/20109050306/2020
 T514C ATG1605-

EPI_ISL_417320 MT419842
 2020-03-04 2020-03-25
 United States SARS-CoV-2/human/USA/CA-SCCPHD-UC16/2020
 C7815T G29711T

EPI_ISL_417334
 2020-03-04 2020-03-25
 France hCoV-19/France/Lyon_06056/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417386
 2020-03-04 2020-03-25
 Australia hCoV-19/Australia/NSW21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T G11634T T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417422
 2020-03-04 2020-03-25
 Belgium hCoV-19/Belgium/DHWM-03041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_417424
 2020-03-04 2020-03-25
 Belgium hCoV-19/Belgium/Human/KA-03042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A17215G A23403G A26530G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_417426
 2020-03-04 2020-03-25
 Belgium hCoV-19/Belgium/SQ-03043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_417444 GWHACDD01000001 MT240479
 2020-03-04 2020-03-25
 Pakistan SARS-CoV-2/Gilgit1/Human/2020/PAK
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C884T C1348T G1397A C9159T G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_417444 GWHACDD01000001 MT240479
 2020-03-04 2020-03-25
 Pakistan SARS-CoV-2/Gilgit1/Human/2020/PAK
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C884T C1348T G1397A C9159T G11083T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_417677
 2020-03-04 2020-03-27
 Iceland hCoV-19/Iceland/39/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417681
 2020-03-04 2020-03-27
 Iceland hCoV-19/Iceland/37/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417715
 2020-03-04 2020-03-27
 Iceland hCoV-19/Iceland/45/2020
 C241T C1059T G1874A C3037T C14408T C18261T A23403G G25563T

EPI_ISL_417844
 2020-03-04 2020-03-27
 Iceland hCoV-19/Iceland/36/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417846
 2020-03-04 2020-03-27
 Iceland hCoV-19/Iceland/40/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417923
 2020-03-04 2020-03-27
 Italy hCoV-19/Italy/INMI5/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A20268G A23403G TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_417989
 2020-03-04 2020-03-28
 Portugal hCoV-19/Portugal/PT0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C335T C3037T C14408T G20398A A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418011
 2020-03-04 2020-03-28
 Portugal hCoV-19/Portugal/PT0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25791T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418208
 2020-03-04 2020-03-29
 Senegal hCoV-19/Senegal/020/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_418222
 2020-03-04 2020-03-29
 France hCoV-19/France/CVL2000/2020
 C241T C3037T C14408T C15324T C18656T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418252
 2020-03-04 2020-03-04
 Spain hCoV-19/Spain/Madrid201449/2020
 C8782T TGA21248- C26088T T28144C GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_418270
 2020-03-04 2020-03-04
 Belgium hCoV-19/Belgium/JL-03044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C27046T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_418988
 2020-03-04 2020-03-31
 Belgium hCoV-19/Belgium/JRH-030459/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T T19299G A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_418989
 2020-03-04 2020-03-31
 Belgium hCoV-19/Belgium/RT-030460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C575T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419233
 2020-03-04 2020-04-01
 Spain hCoV-19/Spain/Canarias201495/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_419709
 2020-03-04 2020-04-03
 Spain hCoV-19/Spain/PaisVasco201602/2020
 C8782T C8874T C14805T A23586G G25979T T28144C C28657T C28863T CTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29788-

EPI_ISL_420101
 2020-03-04 2020-04-05
 Singapore hCoV-19/Singapore/24/2020
 ATTA1- A23359G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420136
 2020-03-04 2020-04-05
 Norway hCoV-19/Norway/1694/2020
 ATTAAAG1- T7876A G11083T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_420314
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/NL-030447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420319
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/GJ-030458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1487A C2094T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420324
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/DVBJ-030468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420442
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/BGM-030444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420443
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/RA-030445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20398A A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420447
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/DJ-030452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T8022G T13402G C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420448
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/GSA-030454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420454
 2020-03-04 2020-04-06
 Belgium hCoV-19/Belgium/VJP-030463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4050C T4053C T8022G T13402G C14408T A23403G C27046T T28785G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420534
 2020-03-04 2020-04-06
 Australia hCoV-19/Australia/WA06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1714T C3037T C14408T A23403G C25350T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420788 MT304481
 2020-03-04 2020-04-06
 United States SARS-CoV-2/human/USA/GA_1445/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_422407
 2020-03-04 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU04/2020
 C1288T C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424344 MT528239
 2020-03-04 2020-04-12
 Italy SARS-CoV-2/human/ITA/INMI10/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2062T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_424667
 2020-03-04 2020-04-13
 Mexico hCoV-19/Mexico/EdoMex-InDRE_03/2020
 C8782T C17470T C26088T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_424858
 2020-03-04 2020-04-13
 United States hCoV-19/USA/GA_1621/2020
 C241T C3037T C14408T T19839C T22016W A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424869
 2020-03-04 2020-04-13
 United States hCoV-19/USA/MD_0026/2020
 C241T C3037T C14408T G15672T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424878
 2020-03-04 2020-04-13
 United States hCoV-19/USA/NJ_3592/2020
 C241T C1059T C3037T C14408T GG18505RK T22270Y TT22274WK A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424901
 2020-03-04 2020-04-13
 United States hCoV-19/USA/NJ_3201/2020
 C241T C3037T C14408T C18877T G19847A A23403G G25563T A28480T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424906
 2020-03-04 2020-04-13
 United States hCoV-19/USA/NY_1922/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424911
 2020-03-04 2020-04-13
 United States hCoV-19/USA/MA_9704/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424912
 2020-03-04 2020-04-13
 United States hCoV-19/USA/MA_9889/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425803
 2020-03-04 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426027
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10683-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T C17010A C21575T G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_426028
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10690-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T G10523C C12119T C14408T C18086A A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426029
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10695-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28808T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426030
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10703-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426031
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10704-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426032
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10707-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C25611T C25693T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426033
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10935-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28808T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426034
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10955-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426035
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10957-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426036
 2020-03-04 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10958-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426425 MT344953
 2020-03-04 2020-04-15
 United States SARS-CoV-2/human/USA/MD_0027/2020
 C241T G558K C3037T C14408T G16508K C18877T A23403G G24933K G25563T C26735Y T29244Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_429136
 2020-03-04 2020-04-23
 Sweden hCoV-19/Sweden/20-50048/2020
 C241T G1306T C3037T G11535T A12790G C13568T C14408T A23403G

EPI_ISL_429137
 2020-03-04 2020-04-23
 Sweden hCoV-19/Sweden/20-50076/2020
 C241T C3037T C13517T C14408T A23403G A26530G

EPI_ISL_429341
 2020-03-04 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI109/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_430113 MT627638
 2020-03-04 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S259/2020
 C8782T T15927G C17747T A17858G C18060T C26936T T28144C

EPI_ISL_430133 MT627618
 2020-03-04 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S279/2020
 C8782T C17747T A17858G C18060T C23758T T28144C

EPI_ISL_430200 MT632571
 2020-03-04 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S162/2020
 C8782T G16377T C17747T A17858G C18060T T28144C

EPI_ISL_430201 MT632604
 2020-03-04 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S163/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430279 MT632616
 2020-03-04 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S241/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430860
 2020-03-04 2020-04-28
 Sweden hCoV-19/Sweden/20-50043/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_435594
 2020-03-04 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC115/2020
 C10834T C17104T

EPI_ISL_435596
 2020-03-04 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC117/2020
 G9653T C27493T G29711T

EPI_ISL_436047 MT434786
 2020-03-04 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0052NYC/2020
 A6639G C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_438003
 2020-03-04 2020-05-12
 Austria hCoV-19/Austria/CeMM0157/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_438004
 2020-03-04 2020-05-12
 Austria hCoV-19/Austria/CeMM0158/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438005
 2020-03-04 2020-05-12
 Austria hCoV-19/Austria/CeMM0159/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_438006
 2020-03-04 2020-05-12
 Austria hCoV-19/Austria/CeMM0160/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_447843 MT472622
 2020-03-04 2020-05-14
 United States SARS-CoV-2/human/USA/MD-CDC-0025/2020
 C241T C1221Y C3037T C5211Y C14408T G14874K C16586Y C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450120
 2020-03-04 2020-05-20
 United States hCoV-19/USA/NY-PV09444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T A8565G C14408T C18877T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450508
 2020-03-04 2020-05-21
 Lebanon hCoV-19/Lebanon/S1_758/2020
 CT40AC C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_450511
 2020-03-04 2020-05-21
 Lebanon hCoV-19/Lebanon/S4_761/2020
 C37G CT40AC C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_452254
 2020-03-04 2020-05-27
 United Kingdom hCoV-19/England/20109003304/2020
 T514C ATG1605- C29400Y

EPI_ISL_452351
 2020-03-04 2020-05-27
 China hCoV-19/Beijing/DT-travelIT04/2020
 

EPI_ISL_454871
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50088/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454874
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50091/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454875
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50093/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_454876
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50096/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_454877
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50098/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454882
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50136/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454883
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50139/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454884
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50144/2020
 C241T C3037T C14408T A23403G A26530G G28739T

EPI_ISL_454885
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50147/2020
 C241T C3037T C14408T A23403G A26530G G28739T

EPI_ISL_454886
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50151/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_454887
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50153/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454888
 2020-03-04 2020-05-29
 Sweden hCoV-19/Sweden/20-50155/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454976
 2020-03-04 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-233/2020
 C21707T

EPI_ISL_455315
 2020-03-04 2020-05-29
 Spain hCoV-19/Spain/Andalucia201488/2020
 C241T C1059T C3037T C12400T C14408T A23403G G25563T

EPI_ISL_455338
 2020-03-04 2020-05-29
 Spain hCoV-19/Spain/LaRioja201563/2020
 G4148T C8782T T9477A C14805T G25979T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_455339
 2020-03-04 2020-05-29
 Spain hCoV-19/Spain/LaRioja201565/2020
 A30T CA3188GC A3889G A3943T A4020G T8724C C8782T T8854G T8869C C8980T T9477A C14805T G25979T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_455352
 2020-03-04 2020-05-29
 Spain hCoV-19/Spain/PaisVasco201491/2020
 C241T C8782T C8874T C14408T A23403G G29734C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_455353
 2020-03-04 2020-05-29
 Spain hCoV-19/Spain/PaisVasco201492/2020
 C241T C3037T C14408T A23403G T29822G TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_455846
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-08069/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_455849
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50092/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_455850
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50094/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455851
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50095/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455852
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50097/2020
 C241T C3037T G7042T C14408T A23403G GGG28881AAC

EPI_ISL_455856
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50140/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455857
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50141/2020
 C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC

EPI_ISL_455859
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50149/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455862
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50156/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455873
 2020-03-04 2020-06-01
 Sweden hCoV-19/Sweden/20-50214/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_457728
 2020-03-04 2020-06-02
 Italy hCoV-19/Italy/2389/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_460116 MT520191
 2020-03-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00440/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460250 MT520325
 2020-03-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00438/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_461146
 2020-03-04 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_464343
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201040706/2020
 C241T C3037T C14408T G23126K A23403G

EPI_ISL_464344
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201040707/2020
 C241T C3037T C14408T G23126K A23403G

EPI_ISL_464362
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060017/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_464380
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060046/2020
 C241T C3037T C14408T G20434T A23403G C25350T C26858T

EPI_ISL_464389
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060061/2020
 G1397A G11083T C12249T C21658T T28688C G29742T

EPI_ISL_464397
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060144/2020
 G1397A C3117T G11083T A13889G C22452T G28109T T28688C G29742T

EPI_ISL_464399
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060160/2020
 G1397A C3117T G3847K T6978Y G11083T A13889G A19939T C22513T G28109T T28688C G29742T

EPI_ISL_464402
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201060323/2020
 A2480G C2558T G11083T C14805T G26144T C26994T

EPI_ISL_464404
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201061034/2020
 A1515G C2862Y C9223T G11083T C14805T T17247C A17799G G26144T

EPI_ISL_464424
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201080012/2020
 T514C ATG1605- C21575T G28950R

EPI_ISL_464425
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201080013/2020
 T514C ATG1605- C21575T G28950R

EPI_ISL_464456
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201080071/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_464460
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/201080077/2020
 A2480G C2558T G11083T C14805T T21072C G26144T

EPI_ISL_464508
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/20109002904/2020
 C241T T898C C3037T C7834T C14408T A23403G C26907Y GGG28881AAC A29771C

EPI_ISL_464561
 2020-03-04 2020-06-11
 United Kingdom hCoV-19/England/20109041904/2020
 A2480G C2558T G11083T C14805T G26144T C26994T

EPI_ISL_468038
 2020-03-04 2020-06-16
 Australia hCoV-19/Australia/SAP099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G1397A G2778T G11083T A18425C G26730T T28688C C28868A G29742T

EPI_ISL_469076
 2020-03-04 2020-06-17
 Sweden hCoV-19/Sweden/20-50120/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_475552
 2020-03-04 2020-06-23
 Sweden hCoV-19/Sweden/20-08074/2020
 C14805T T17247C A20116G A21417G G26144T

EPI_ISL_479805
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T A10555G G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479806
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T A10555G G16381A T17877C T28144C G28878A G29742A AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_479834
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479835
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479917
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- T4402C G5062T C8782T T28144C TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480054
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480055
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480056
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G3179A C6982T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480057
 2020-03-04 2020-07-01
 Japan hCoV-19/Japan/PG-0388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_483194
 2020-03-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0515-SAN/2020
 ATTAAAGGTTTATACC1- C241T C1059T C1887T C3037T C14408T G22205C A23403G G25563T A29558G

EPI_ISL_489992
 2020-03-04 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR-WC9205/2020
 ATTAAAGGTTTA1- G1467A C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_489993
 2020-03-04 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR-WC9174/2020
 TT2AC -5AGTGTGCCTATT G1467A C6312A G11083T C13730T C23929T C28311T -A29865CCCTGGGCTCCCGCCGGCTTCTATTGACTTGGGTTAATCGTGTGACCGCGGTGGCTGGCACGAAT A29871C A29874CCCTGGGGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTTAATCACTGCTGTTTCCCGTGGGGGTGTGGCTAGGCTAAGCGTTTTGAGCTGCATTGCTGCGTGCTTGATGCTTGTCCCTTTTGATCGTGGTGATTTAGAGGGTGAACTCACTGGAACGGGGATGCTTGCATGTGTAATCTTACT A29877G AAA29879GCT A29884T A29886G AAAA29890GGCT AA29895GG AA29898CC A29903C

EPI_ISL_493329
 2020-03-04 2020-07-21
 Italy hCoV-19/Italy/INMI17/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C14408T A23403G A26530G T27501G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_497999
 2020-03-04 2020-07-26
 South Korea hCoV-19/Korea/KCDC2098/2020
 ATTAAAG1- G5572T G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_498000
 2020-03-04 2020-07-26
 South Korea hCoV-19/Korea/KCDC2099/2020
 ATTAAA1- G5572T G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_498001
 2020-03-04 2020-07-26
 South Korea hCoV-19/Korea/KCDC2100/2020
 ATTAAAG1- G5572T G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_498003
 2020-03-04 2020-07-26
 South Korea hCoV-19/Korea/KCDC2102/2020
 ATTAAAG1- G5572T G9923C G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_500106
 2020-03-04 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A50D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_501181
 2020-03-04 2020-07-31
 Malaysia hCoV-19/Malaysia/0956/2020
 ATTA1- C29870A

EPI_ISL_508936
 2020-03-04 2020-08-04
 France hCoV-19/France/ARA06032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C3037T C12116T C14408T C16640A A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_512990
 2020-03-04 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH721/2020
 C3037T C8782T C14408T C21549T A23403G G27281T G29742A

EPI_ISL_512991
 2020-03-04 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH722/2020
 C241T C3037T C8782T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512992
 2020-03-04 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH723/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_516086 MT483867
 2020-03-04 2020-05-18
 Italy SARS-CoV-2/human/ITA/78952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2910S C3037T C14408T C17822T A23403G A26530G G29462K GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516087 MT483874
 2020-03-04 2020-05-18
 Italy SARS-CoV-2/human/ITA/78955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T G4255T C14408T T15893Y A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516642
 2020-03-04 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D679-14/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_524481
 2020-03-04 2020-08-28
 Switzerland hCoV-19/Switzerland/AG-1000478772/2020
 C241T C3037T C9561Y C14408T A23403G GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_524483
 2020-03-04 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000478869/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A187G C241T C3037T C14408T A23403G C27494Y T27653C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_527928
 2020-03-04 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42176753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3239A C14408T C15324T G21800T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_530029
 2020-03-04 2020-09-10
 Spain hCoV-19/Spain/MD-LP102-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T C14408T A20268G A23403G C29171T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_539505
 2020-03-04 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201664/2020
 G11083T G26144T

EPI_ISL_547560
 2020-03-04 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT325569
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/GA_1621/2020
 C241T C3037T C14408T T19839C T22016W A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT325587
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/MD_0026/2020
 C241T C3037T C14408T G15672T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325596
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/NJ_3592/2020
 C241T C1059T C3037T C14408T GG18505RK T22270Y TT22274WK A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325622
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/NJ_3201/2020
 C241T C3037T C14408T C18877T G19847A A23403G G25563T A28480T AAAAAAAAAAAAAAAAAAAAA29883-

MT325627
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/NY_1922/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325632
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/MA_9704/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325633
 2020-03-04 2020-04-10
 United States SARS-CoV-2/human/USA/MA_9889/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT483880
 2020-03-04 2020-05-18
 Italy SARS-CoV-2/human/ITA/78955/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T G4255T C14408T G22205S A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_413650
 2020-03-05 2020-03-09
 United States hCoV-19/USA/WA15-UW11/2020
 A1T C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_413651
 2020-03-05 2020-03-09
 United States hCoV-19/USA/WA16-UW12/2020
 A1T T3G C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_413653
 2020-03-05 2020-03-09
 United States hCoV-19/USA/WA18-UW14/2020
 A1T A6T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_413925 MT419835
 2020-03-05 2020-03-10
 United States SARS-CoV-2/human/USA/CA-CDPH-UC7/2020
 A1G A3046G C8782T A16467G C17747T A17858G C18060T C23185T T28144C

EPI_ISL_413928 MT419837
 2020-03-05 2020-03-10
 United States SARS-CoV-2/human/USA/CA-CDPH-UC9/2020
 A3046G C8782T A16467G G16975T C17747T A17858G C18060T C23185T T28144C

EPI_ISL_413931 MT419839
 2020-03-05 2020-03-10
 United States SARS-CoV-2/human/USA/CA-CDPH-UC11/2020
 A3046G C8782T A16467G G16975T C17747T A17858G C18060T C23185T T28144C

EPI_ISL_414366
 2020-03-05 2020-03-11
 United States hCoV-19/USA/WA-UW18/2020
 ATTAAAGGT1- C8782T C17747T A17858G C18060T T28144C -29904GAA

EPI_ISL_414367
 2020-03-05 2020-03-11
 United States hCoV-19/USA/WA-UW19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- GG260CC A263- C8782T C17747T A17858G C18060T C25731T T28144C AAAAAAAAA29895-

EPI_ISL_414368
 2020-03-05 2020-03-11
 United States hCoV-19/USA/WA-UW20/2020
 ATTAAAGGTTTAT1- A35T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_414369
 2020-03-05 2020-03-11
 United States hCoV-19/USA/WA-UW21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- TT77AA A80T A82T C84A G86A C8782T C17747T A17858G C18060T T28144C -29904AAAAAANANANANV

EPI_ISL_414467 LR878283
 2020-03-05 2020-03-12
 Netherlands hCoV-19/Netherlands/ZuidHolland_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- ATG1605- C12068T C12621T TTA21991- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414561 LR878316
 2020-03-05 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3145T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414580
 2020-03-05 2020-03-13
 Chile hCoV-19/Chile/Santiago-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3393T C14408T A23403G GGG28881AAC CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_414588 MT188341
 2020-03-05 2020-03-13
 United States USA/MN1-MDH1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A6035G C8782T A16467G C17747T A17858G C18060T -C21385TTCT C23185T T28144C CCATGTGATTTTAATAGCTTCTT29837- TG29867CCTCTCGA C29870A A29892G AA29896GG

EPI_ISL_414593
 2020-03-05 2020-03-14
 United States hCoV-19/USA/WA-UW24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAA29896-

EPI_ISL_414594
 2020-03-05 2020-03-14
 United States hCoV-19/USA/WA-UW25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTT1- T3011C C3037T C14408T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_414595
 2020-03-05 2020-03-14
 United States hCoV-19/USA/WA-UW26/2020
 A1- T3G C832T C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_414598 MT198652
 2020-03-05 2020-03-16
 Spain SARS-CoV-2/human/ESP/Valencia003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414641
 2020-03-05 2020-03-15
 Finland hCoV-19/Finland/FIN-313/2020
 C241T C3037T C14408T C22277A A23403G C23635T C27046T GGG28881AAC GTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29808-

EPI_ISL_415605 MT252801
 2020-03-05 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGAT1- G261T C8782T C17747T A17858G C18060T T23010C T28144C TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_415649
 2020-03-05 2020-03-18
 France hCoV-19/France/HF2039/2020
 C241T C1059T T1666C C3037T C14408T A23403G C23520T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_415651
 2020-03-05 2020-03-18
 France hCoV-19/France/BFC2094/2020
 C241T C3037T G3728T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_415652
 2020-03-05 2020-03-18
 France hCoV-19/France/BFC2147/2020
 C241T C3037T C13051T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416035
 2020-03-05 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-13/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_416036
 2020-03-05 2020-03-20
 Brazil hCoV-19/Brazil/SPBR-14/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A23403G G25088T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416479
 2020-03-05 2020-03-22
 Georgia hCoV-19/Georgia/Tb-273/2020
 ATT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416507
 2020-03-05 2020-03-22
 France hCoV-19/France/B2340/2020
 C3987T G11083T G20887A T23084C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416743
 2020-03-05 2020-03-23
 Czech Republic hCoV-19/Czech Republic/ChVir1912/2020
 ATTAAAG1- C241T C3037T C14408T A23403G GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_416751
 2020-03-05 2020-03-23
 France hCoV-19/France/Clermont-Ferrand_651/2020
 C241T C3037T C14408T C15324T G19684T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417103 MT627236
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S50/2020
 C8782T C16466T C17747T A17858G C18060T T28144C

EPI_ISL_417107 MT627259
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S54/2020
 C8782T C16466T C17747T A17858G C18060T T28144C

EPI_ISL_417114 MT627282
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S61/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417122 MT627302
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S69/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417123 MT627250
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S70/2020
 C6813T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417124 MT627294
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S71/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417126 MT627229
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S73/2020
 C8782T G11083T C17747T A17858G C18060T T28144C

EPI_ISL_417127 MT627278
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S74/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417128 MT627314
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S75/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417129 MT627238
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S76/2020
 C8782T A14604G C17747T A17858G C18060T C21911T T28144C

EPI_ISL_417132 MT627257
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S79/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417133 MT627247
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S80/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417136 MT627232
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S83/2020
 C8782T G14126A C17747T A17858G C18060T T28144C

EPI_ISL_417157 MT627256
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S104/2020
 C6317T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417163 MT605816
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S110/2020
 C8782T T15927G C17747T A17858G C18060T C18401T C26936T T28144C

EPI_ISL_417167 MT627268
 2020-03-05 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S114/2020
 C6317T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417252
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20108006003/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417260
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20109035906/2020
 C241T C3037T C10116Y C14408T A23403G GGG28881AAC

EPI_ISL_417266
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20109050506/2020
 C241T C3037T C14408T A23403G C25350Y

EPI_ISL_417268
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20109050706/2020
 C2558T G11083T C14805T G26144T

EPI_ISL_417282
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20109056906/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_417286
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20109093706/2020
 ATG1605- C20270T A29683T

EPI_ISL_417302
 2020-03-05 2020-03-25
 United Kingdom hCoV-19/England/20110000706/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417384
 2020-03-05 2020-03-25
 Australia hCoV-19/Australia/NSW18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C5223T G11083T T22213C T28688C C29563T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417388
 2020-03-05 2020-03-25
 Australia hCoV-19/Australia/NSW25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C21034T C23929T C28311T C29732T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417519 MT374102
 2020-03-05 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-06/2020
 AT1- C1059T G1397A G11083T C23934T T28648C T28688C G29742T

EPI_ISL_417683
 2020-03-05 2020-03-27
 Iceland hCoV-19/Iceland/47/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417851
 2020-03-05 2020-03-27
 Iceland hCoV-19/Iceland/53/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_417988
 2020-03-05 2020-03-28
 Portugal hCoV-19/Portugal/PT0004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418223
 2020-03-05 2020-03-29
 France hCoV-19/France/HF2060/2020
 C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418330
 2020-03-05 2020-03-05
 Canada hCoV-19/Canada/ON_PHL8580/2020
 A1- C8782T C17747T A17858G C18060T T18863C A24694T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418366
 2020-03-05 2020-03-05
 Canada hCoV-19/Canada/ON_PHL3350/2020
 A1- C241T C3037T A10630G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418792
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/GL-030546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T C14408T C23393T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418796
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/VDLH-030548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418797
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/VDLH-030548/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_418798
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/GS-030549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418806
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/BG-030551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418848
 2020-03-05 2020-03-31
 Canada hCoV-19/Canada/BC_8159203/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418863
 2020-03-05 2020-03-31
 Belgium hCoV-19/Belgium/VS-030542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17002T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419230
 2020-03-05 2020-04-01
 Spain hCoV-19/Spain/Andalucia201617/2020
 C8782T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419238
 2020-03-05 2020-04-01
 Spain hCoV-19/Spain/PaisVasco201493/2020
 T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419566
 2020-03-05 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS0641910/2020
 G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_420102
 2020-03-05 2020-04-05
 Singapore hCoV-19/Singapore/25/2020
 ATTAAAGG1- C18888T C21306T G24368C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420103
 2020-03-05 2020-04-05
 Singapore hCoV-19/Singapore/26/2020
 ATTAAAGGTTTA1- C17536Y C18680Y C21306T T27919Y G29773K TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420104
 2020-03-05 2020-04-05
 Singapore hCoV-19/Singapore/27/2020
 ATT1- T9W A7479G G11083T C14805T T17247C C25572T G26144T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420139
 2020-03-05 2020-04-05
 Norway hCoV-19/Norway/1811/2020
 ATTAAAGGTTT1- C241T C3037T C14408T G15575T A23403G A26530G C29541T AAAAAA29898-

EPI_ISL_420317
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/RJ-030552/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A4050C T4053C C14408T A23403G C27046T T28785G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_420322
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/DBOM-030566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1666C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420325
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/DLDJ-030569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420329
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/GE-030573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A12982G C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420330
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/MCW-030574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420331
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/LY-030575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420334
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/GOF-030578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420337
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/PAN-030681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420339
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/SJ-030583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420344
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/RJL-030588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420348
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/FM-030592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420349
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/DD-030593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12139C A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420353
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/LD-030597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y C1376T C3037T A8072G C14408T C18131T A23403G GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420354
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/BS-030598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420367
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/JK-0305110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420444
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/MF-030546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420453
 2020-03-05 2020-04-06
 Belgium hCoV-19/Belgium/VF-030562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4050C T13402G C14408T A23403G C27046T C28344A GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420541
 2020-03-05 2020-04-06
 Slovenia hCoV-19/Slovenia/808/2020
 ATTAAA1- G11083T C14805T C23707T G26144T T27384C C28826T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_421171
 2020-03-05 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_1301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421182
 2020-03-05 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10001/2020
 C241T C1059T C3037T C14408T A23403G C23679T G25563T G28857A

EPI_ISL_424843
 2020-03-05 2020-04-13
 United States hCoV-19/USA/MA_0020/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424853
 2020-03-05 2020-04-13
 United States hCoV-19/USA/FL_9590/2020
 G11083T C14805T A15779C T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424854
 2020-03-05 2020-04-13
 United States hCoV-19/USA/FL_9655/2020
 T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635Y G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424859
 2020-03-05 2020-04-13
 United States hCoV-19/USA/GA_1847/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424874
 2020-03-05 2020-04-13
 United States hCoV-19/USA/NE_6605/2020
 G1440A G2891A C12651T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424881
 2020-03-05 2020-04-13
 United States hCoV-19/USA/PA_1802/2020
 C241T C3037T C14408T A20268G A23403G G29734C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424882
 2020-03-05 2020-04-13
 United States hCoV-19/USA/PA_1881/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424887
 2020-03-05 2020-04-13
 United States hCoV-19/USA/RI_0702/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424889
 2020-03-05 2020-04-13
 United States hCoV-19/USA/UT_8199/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424902
 2020-03-05 2020-04-13
 United States hCoV-19/USA/SC_3520/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424905
 2020-03-05 2020-04-13
 United States hCoV-19/USA/SC_3572/2020
 C241T C3037T G4255T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424908
 2020-03-05 2020-04-13
 United States hCoV-19/USA/MA_8932/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424909
 2020-03-05 2020-04-13
 United States hCoV-19/USA/MA_8933/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424910
 2020-03-05 2020-04-13
 United States hCoV-19/USA/MA_9703/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424913
 2020-03-05 2020-04-13
 United States hCoV-19/USA/MA_1355/2020
 C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425806
 2020-03-05 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6364A C14408T A18710G A20268G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425819
 2020-03-05 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB002/2020
 T514C C19484T

EPI_ISL_426037
 2020-03-05 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-10999-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426038
 2020-03-05 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11000-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T C17010A C21575T G26144T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426039
 2020-03-05 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11003-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426040
 2020-03-05 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11017-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426420 MT344948
 2020-03-05 2020-04-15
 United States SARS-CoV-2/human/USA/HI_4970/2020
 C241T C3037T C14408T A20268G A23403G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426426 MT344954
 2020-03-05 2020-04-15
 United States SARS-CoV-2/human/USA/MN_0100/2020
 A6035G C8782T A16467G C17747T A17858G C18060T C23185T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426512
 2020-03-05 2020-04-17
 United States hCoV-19/USA/AZ-TG268893/2020
 C4633T C8782T C14645T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427299
 2020-03-05 2020-04-18
 Brazil hCoV-19/Brazil/RJ-352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T9477A C14805T A21694G G25979T T28144C C28657T C28863T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_429138
 2020-03-05 2020-04-23
 Sweden hCoV-19/Sweden/20-50087/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_430117 MT627626
 2020-03-05 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S263/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430119 MT627637
 2020-03-05 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S265/2020
 C8782T C17747T A17858G C18060T G22984A T27384C T28144C

EPI_ISL_430122 MT627632
 2020-03-05 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S268/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430146 MT627612
 2020-03-05 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S292/2020
 C8782T C17747T A17858G C18060T G26466A T28144C

EPI_ISL_430152 MT627623
 2020-03-05 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S298/2020
 C8782T C16750T C17747T A17858G C18060T T28144C

EPI_ISL_430439
 2020-03-05 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC1177/2020
 A1GGGCAGACGGGCGA A4T C11752T C19170A A29877G AA29879TG A29882T AAAAAAAAAAAAAAAAAA29886G

EPI_ISL_430440
 2020-03-05 2020-04-27
 Malaysia hCoV-19/Malaysia/IMR_WC1170/2020
 A1TTTTTTACTATGGTTGAAAAGATGTGCCCTACTGAACAAAAATCACACATGAAGATTTACTTTGTGA -A3CAG AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_435601
 2020-03-05 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC122/2020
 

EPI_ISL_436048 MT434782
 2020-03-05 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0076NYC/2020
 C241T C1059T C3037T C11916T C13536T C14408T C18998T A23403G G25563T A28989W G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_437204
 2020-03-05 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0002/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_437894 MT459897
 2020-03-05 2020-05-11
 Greece SARS-CoV-2/human/GRC/234_31670/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437929
 2020-03-05 2020-05-12
 Austria hCoV-19/Austria/CeMM0041/2020
 C241T C3037T C14408T T22521K A23403G AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_438007
 2020-03-05 2020-05-12
 Austria hCoV-19/Austria/CeMM0161/2020
 C241T C3037T G12832A C14408T A23403G G24102C C26894T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438008
 2020-03-05 2020-05-12
 Austria hCoV-19/Austria/CeMM0162/2020
 C241T C3037T G12832A C14408T A23403G G24102C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_443313
 2020-03-05 2020-05-12
 France hCoV-19/France/B6041/2020
 C241T C3037T C14408T C22120T A23403G C23575T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_445246
 2020-03-05 2020-05-15
 Chile hCoV-19/Chile/Puerto_Montt_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GATTTT29843A AT29850GA TC29856AT TAGG29859- G29864A G29868C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_447846 MT472623
 2020-03-05 2020-05-14
 United States SARS-CoV-2/human/USA/VT-CDC-0303/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451934
 2020-03-05 2020-05-25
 Croatia hCoV-19/Croatia/ZG-297-20/2020
 ATTAAAGGTT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28209T GGG28881AAC

EPI_ISL_452134 MT512417
 2020-03-05 2020-05-26
 United States SARS-CoV-2/human/USA/IL-CDC-1732/2020
 C8782Y G13571K C16694M G16912K C17747T A17858G G18002K C18060T T28144C G28631R AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452352
 2020-03-05 2020-05-27
 China hCoV-19/Beijing/DT-travelIT01/2020
 A12C C241T C3037T T6552G C14408T C18568T A23118C A23403G

EPI_ISL_452751
 2020-03-05 2020-05-27
 Spain hCoV-19/Spain/COV000717/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452754
 2020-03-05 2020-05-27
 Spain hCoV-19/Spain/COV000714/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_452759
 2020-03-05 2020-05-27
 Spain hCoV-19/Spain/COV000707/2020
 C8782T T9477A C14805T G25785T G25979T T28144C C28657T C28863T

EPI_ISL_454451
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08076/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454452
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08077/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454453
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08078/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454454
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08079/2020
 C241T C3037T C14408T A20608G A23403G C27046T GGG28881AAC

EPI_ISL_454455
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08081/2020
 C241T C3037T C14408T A20608G A23403G C27046T GGG28881AAC

EPI_ISL_454456
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08082/2020
 C241T C3037T C14408T A23403G

EPI_ISL_454457
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08083/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454458
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08084/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_454459
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08085/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_454460
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08086/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_454461
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08088/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454462
 2020-03-05 2020-05-28
 Sweden hCoV-19/Sweden/20-08090/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454592
 2020-03-05 2020-05-28
 Croatia hCoV-19/Croatia/297_Varazdin/2020
 ATTAAA1- C241T C3037T C4002T G10097A TA12494WM AC12498WM C13536T C14408T A23403G G25593C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_454756
 2020-03-05 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10007/2020
 ATTA1- T514C ATG1605- C18647T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_455316
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201613/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_455317
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201614/2020
 A436C G7160T C8782T T9477A A19673G T19843C T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455318
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C14805T C21342G C23707T T27384C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455319
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- A21187C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455320
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201620/2020
 C8782T T9477A C12513T C14805T T23590A A25765T C26681T T28144C C28657T C28863T

EPI_ISL_455321
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201622/2020
 C2143T T3981C A3985G C8782T T9477A C14805T G25979T T28144C C28657T

EPI_ISL_455322
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Andalucia201623/2020
 C1419T C8782T T9477A C14805T T21657A A22110T T28144C C28657T C28863T

EPI_ISL_455325
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/Canarias201811/2020
 A391G C635T C1875T C3792T T4579A C8782T T9477A A9673T C9687T C14805T A21620T C28657T T29760C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_455340
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/LaRioja201568/2020
 C8782T T9477A C14805T T28144C C28657T C28863T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_455354
 2020-03-05 2020-05-29
 Spain hCoV-19/Spain/PaisVasco201920/2020
 C241T C8782T C8874T C14408T A23403G G29734C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_455409
 2020-03-05 2020-05-29
 China hCoV-19/Wuhan/HB-WHCM2-273/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- T13243C T14684C CC18109-T

EPI_ISL_455444
 2020-03-05 2020-05-29
 Poland hCoV-19/Poland/PL_P31/2020
 C241T C3037T C14408T A23403G

EPI_ISL_455858
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50148/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_455860
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50150/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455861
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50154/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_455863
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50194/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_455864
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50196/2020
 C241T C3037T C14408T A23403G C27046T G27506T GGG28881AAC

EPI_ISL_455867
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50201/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_455868
 2020-03-05 2020-06-01
 Sweden hCoV-19/Sweden/20-50202/2020
 C241T C3037T C14408T G17658T G22583A A23403G T24152C

EPI_ISL_455958
 2020-03-05 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10170/2020
 C241T C3037T C5175T T11638C C14408T A23403G GGG28881AAC C29708T G29736T

EPI_ISL_464417
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080001/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29256T

EPI_ISL_464423
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080010/2020
 C241T T586W C3037T C14408T A23403G C25350T

EPI_ISL_464427
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080017/2020
 G11083T C14805T G22464T C23707T G26144T T27384C

EPI_ISL_464432
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080027/2020
 A2480G C2558T G11083T C14805T T21072C G26144T

EPI_ISL_464447
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080056/2020
 C241T C3037T G3994T C14408T G15910T TTA21991- A23403G

EPI_ISL_464449
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080059/2020
 C241T C3037T C14408T A23403G

EPI_ISL_464467
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080091/2020
 A39R C241T C3037T C14408T T17835C A23403G

EPI_ISL_464473
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201080164/2020
 T514C ATG1605- A28973T

EPI_ISL_464479
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/201081250/2020
 G1397A C2511T G11083T T17659G C23625T C28253Y T28688Y C28849G G29742T

EPI_ISL_464480
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/20108125404/2020
 G1397A G11083T T17659G C23625T G28242K T28688C C28849G G29742T

EPI_ISL_464545
 2020-03-05 2020-06-11
 United Kingdom hCoV-19/England/20109019704/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_466927 LR824035
 2020-03-05 2020-06-12
 Switzerland 100002
 C241T C835Y C3037T C3096Y G3243R AA3361WW C3597Y A5257W C5497Y A6105W T7302Y T11182Y G12838R C14408T C15324T C15328Y T16614Y A19437W A19767M G20291K G20730R AC20761MY T20765Y GA20781KW G21508R G21604S T21628Y C22347M G22644K C22735Y A23403G C23435Y C24213Y A25591R A25986R T26094Y C26735Y C27002Y A27062M C27219Y G28727S C29750M C29754M C29762M C29769M T29772K A29796R

EPI_ISL_469079
 2020-03-05 2020-06-17
 Sweden hCoV-19/Sweden/20-08089/2020
 C241T C3037T G5572T C14408T A23403G A25024G C27046T GGG28881AAC

EPI_ISL_475843
 2020-03-05 2020-06-25
 Austria hCoV-19/Austria/CeMM0413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T G14653A C18252T T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475853
 2020-03-05 2020-06-25
 Austria hCoV-19/Austria/CeMM0425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T25304C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475866
 2020-03-05 2020-06-25
 Austria hCoV-19/Austria/CeMM0449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15277T C15324T A16734G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476797
 2020-03-05 2020-06-26
 Singapore hCoV-19/Singapore/28nan/2020
 CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479807
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C8782T G16381A T17877C T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479815
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479836
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T T18144A C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479886
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- ATG1605- C17898T A29596G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479887
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- ATG1605- C17898T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479888
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479925
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T T9490C G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480034
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C8782T G16381A T17877C C26139T T28144C G28878A G29742A AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_480058
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480059
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- G3179A C6982T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480060
 2020-03-05 2020-07-01
 Japan hCoV-19/Japan/PG-0391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_482468
 2020-03-05 2020-07-03
 Peru hCoV-19/Peru/01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTG1- C241T C3037T C14408T C15277T A21917G A23403G A26530G TTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29680-

EPI_ISL_482469
 2020-03-05 2020-07-03
 Canada hCoV-19/Canada/NS_40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482575
 2020-03-05 2020-07-04
 China hCoV-19/Hangzhou/HZCDC6111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_488337
 2020-03-05 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488831
 2020-03-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-28115D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492987
 2020-03-05 2020-07-20
 Italy hCoV-19/Italy/NegrarVR_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C13620T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_498002
 2020-03-05 2020-07-26
 South Korea hCoV-19/Korea/KCDC2101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G11083T G13564T C14805T G15708T G26144T CTTAGGAGAATG29857-

EPI_ISL_500086
 2020-03-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4D70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_500091
 2020-03-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4E04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2558T G11083T C14805T G26144T

EPI_ISL_500099
 2020-03-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4FB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_500101
 2020-03-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC AAAAAAAAA29895-

EPI_ISL_500112
 2020-03-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350T

EPI_ISL_500391
 2020-03-05 2020-07-28
 Spain hCoV-19/Spain/COV005957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_523199
 2020-03-05 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524485
 2020-03-05 2020-08-28
 Switzerland hCoV-19/Switzerland/ZH-1000479112/2020
 C241T C3037T G5008T C14408T C19170T G19509A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_525576
 2020-03-05 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-10713-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525577
 2020-03-05 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-10715-01/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527931
 2020-03-05 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42177239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527932
 2020-03-05 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42177430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_527933
 2020-03-05 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42177434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527934
 2020-03-05 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42177585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_530030
 2020-03-05 2020-09-10
 Spain hCoV-19/Spain/MD-LP103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G25273C C25585T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_537410
 2020-03-05 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C8782T T9477A C14805T G24386K G25979T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539498
 2020-03-05 2020-09-18
 Spain hCoV-19/Spain/AN-ISCIII-201618/2020
 ATG1605- C5318T TTGAATATG22065- A22116T A22155G

EPI_ISL_539501
 2020-03-05 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201587/2020
 G11071C C11074T G11083T C24382T G26144T

EPI_ISL_539502
 2020-03-05 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201588/2020
 C8782T G26144T

EPI_ISL_547525
 2020-03-05 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C C6078T C18647T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547559
 2020-03-05 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560620
 2020-03-05 2020-09-29
 France hCoV-19/France/GE8767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT325566
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/FL_9590/2020
 G11083T C14805T A15779C T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

MT325567
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/FL_9655/2020
 T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635Y G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325570
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/GA_1847/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325582
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/MA_0020/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325592
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/NE_6605/2020
 G1440A G2891A C12651T AAAAAAAAAAAAAAAAAAAAA29883-

MT325599
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/PA_1802/2020
 C241T C3037T C14408T A20268G A23403G G29734C AAAAAAAAAAAAAAAAAAAAA29883-

MT325600
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/PA_1881/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325605
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/RI_0702/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325609
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/UT_8199/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325623
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3520/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325626
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3572/2020
 C241T C3037T G4255T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAA29883-

MT325629
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/MA_8932/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

MT325630
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/MA_8933/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325631
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/MA_9703/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325634
 2020-03-05 2020-04-10
 United States SARS-CoV-2/human/USA/MA_1355/2020
 C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

MT873080
 2020-03-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00003/2020
 ATTAAA1- G11083T C14805T T17247C G26144T AAAAAAAAAAAAAA29890-

EPI_ISL_414451 LR878275
 2020-03-06 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordBrabant_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G11083T C14805T T17247C T23926C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414452 LR878295
 2020-03-06 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordBrabant_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C4763T G29392T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414457 LR878293
 2020-03-06 2020-03-12
 Netherlands hCoV-19/Netherlands/NoordBrabant_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C7063T C14408T A23403G G28739T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414468 LR878272
 2020-03-06 2020-03-12
 Netherlands hCoV-19/Netherlands/ZuidHolland_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G11083T C14805T G15535T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414470 LR878267
 2020-03-06 2020-03-12
 Netherlands hCoV-19/Netherlands/ZuidHolland_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G GGG28881AAC C29362T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414558 LR878287
 2020-03-06 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T G1397A G3145T G11083T C20235A T20787C T22042C T28688C T28835C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414591
 2020-03-06 2020-03-14
 United States hCoV-19/USA/WA-UW22/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C40T G1397A G11083T T28688C G29742T AAAAAAAAAA29894-

EPI_ISL_414592
 2020-03-06 2020-03-14
 United States hCoV-19/USA/WA-UW23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A35W C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_415435
 2020-03-06 2020-03-17
 United Kingdom hCoV-19/Wales/PHW06/2020
 ATTAAAGGTTTA1- C241T C3037T C6990T C14408T TATGTAAATAAACATGCATTCCACACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAACAATTACCATTTTTCTATTACTCTGACAGTCCATGTGAGTCTCATGGAAAACAAGTAGTGTCAGATATAGATTATGTACCACTAAAGTCTGCTACGTGTATAACACGTTGCAATTTAGGTGGTGCTGTCTGTAGACATCATGCTAATGAGTACAGATTGTATCTCGATGCTTATAACATGATGATCTCAGC19297- A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_415658
 2020-03-06 2020-03-19
 Chile hCoV-19/Chile/Santiago_op2d1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_415705
 2020-03-06 2020-03-19
 Switzerland hCoV-19/Switzerland/GE4135/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_415706
 2020-03-06 2020-03-19
 Switzerland hCoV-19/Switzerland/GE06207/2020
 A4T C241T C3037T C14408T C15324T A23403G

EPI_ISL_416430
 2020-03-06 2020-03-21
 Vietnam hCoV-19/Vietnam/CM295/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_416431
 2020-03-06 2020-03-21
 Vietnam hCoV-19/Vietnam/CM296/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G GGG28881AAC A29879C A29885T

EPI_ISL_416454 MT252822
 2020-03-06 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- T150C T153G C8782T C17747T A17858G C18060T T28144C C29870A A29903G

EPI_ISL_416509
 2020-03-06 2020-03-22
 France hCoV-19/France/B2344/2020
 C241T C1059T A1547G C3037T C14408T G21920A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416510
 2020-03-06 2020-03-22
 France hCoV-19/France/B2346/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416750
 2020-03-06 2020-03-23
 France hCoV-19/France/Lyon_683/2020
 C241T C3037T C14408T C15324T C21552T A23403G C24990T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416753
 2020-03-06 2020-03-23
 France hCoV-19/France/Lyon_06464 /2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416754
 2020-03-06 2020-03-23
 France hCoV-19/France/Lyon_06487/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_416756
 2020-03-06 2020-03-23
 France hCoV-19/France/Lyon_06531/2020
 C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417119 MT627310
 2020-03-06 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S66/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417125 MT627289
 2020-03-06 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S72/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417258
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20108034006/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_417272
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20109052006/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417283
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20109058906/2020
 T514C ATG1605-

EPI_ISL_417285
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20109093606/2020
 T931C ATG1605- T12418C G20024A G26416C G29425A

EPI_ISL_417289
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20109094006/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_417297
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20109099006/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29256T

EPI_ISL_417301
 2020-03-06 2020-03-25
 United Kingdom hCoV-19/England/20110000606/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417335
 2020-03-06 2020-03-25
 France hCoV-19/France/Lyon_06573/2020
 ATG1605- C3787T C12621T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417336
 2020-03-06 2020-03-25
 France hCoV-19/France/Lyon_0668/2020
 C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417385
 2020-03-06 2020-03-25
 Australia hCoV-19/Australia/NSW19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A A10912G G11083T T22213C T28688C C29563T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417387
 2020-03-06 2020-03-25
 Australia hCoV-19/Australia/NSW24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T G1397A G8653T G11083T C24904T T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417425
 2020-03-06 2020-03-25
 Belgium hCoV-19/Belgium/VBK-03061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C6628T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_417684
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/54/2020
 C241T C3037T T3862A C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417692
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/57/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417731
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/61/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417757
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/62/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417852
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/56/2020
 C241T C3037T C14408T A23403G A25958G C27046T GGG28881AAC

EPI_ISL_417853
 2020-03-06 2020-03-27
 Iceland hCoV-19/Iceland/59/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417877
 2020-03-06 2020-03-27
 Slovakia hCoV-19/Slovakia/SK-BMC1/2020
 C241T C884T C3037T C14408T A23403G A26530G

EPI_ISL_417879
 2020-03-06 2020-03-27
 Slovakia hCoV-19/Slovakia/SK-BMC5/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_418012
 2020-03-06 2020-03-28
 Portugal hCoV-19/Portugal/PT0027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418516
 2020-03-06 2020-03-30
 Ireland hCoV-19/Ireland/21023/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC C29095T

EPI_ISL_418548
 2020-03-06 2020-03-30
 Ireland hCoV-19/Ireland/21145/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_418794
 2020-03-06 2020-03-31
 Belgium hCoV-19/Belgium/VHRA-030644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2893G C3037T C14408T A20276G A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418795
 2020-03-06 2020-03-31
 Belgium hCoV-19/Belgium/NKR-030645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418805
 2020-03-06 2020-03-31
 Belgium hCoV-19/Belgium/VPE-030650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G9388T C11020T C18501T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418818
 2020-03-06 2020-03-31
 Canada hCoV-19/Canada/BC_1318414/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418981
 2020-03-06 2020-03-31
 Belgium hCoV-19/Belgium/VRAR-030643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C14408T T15504G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419658
 2020-03-06 2020-04-03
 Austria hCoV-19/Austria/CeMM0005/2020
 T10721K G11083T C14805T T17247C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420105
 2020-03-06 2020-04-05
 Singapore hCoV-19/Singapore/28/2020
 ATTAAAGGTTTAT1- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420294
 2020-03-06 2020-04-06
 Slovenia hCoV-19/Slovenia/4584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T TTA21991- A23403G -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_420315
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/RYR-030649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1487A C2094T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420321
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/WWM-030665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420326
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/AKM-030670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T C21676T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420328
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/VGA-030672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4396G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420332
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/WAM-030676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420333
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/RS-030677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1487A C3037T C14408T A23403G GGG28881AAC G29690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420335
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/CD-030679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420336
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/PA-030680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420340
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/MJP-030684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1487A C2094T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420341
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/LM-030685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420342
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/ECC-030686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420343
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/BM-030687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T A23403G G25563T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420345
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/MC-030689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420347
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/DA-030691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420350
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/BDW-030694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420351
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/VMC-030695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1376T C3037T A8072G C14408T C18131T A23403G GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420355
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/RR-030699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T G19525T C21676T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420356
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/MJP-0306100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420441
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/RA-030664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420446
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/DAL-030650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420449
 2020-03-06 2020-04-06
 Belgium hCoV-19/Belgium/VHC-030655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4050C G4255T T13402G C14408T A23403G A26530G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_424841
 2020-03-06 2020-04-13
 United States hCoV-19/USA/SC_3569/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424844
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3672/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424845
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3699/2020
 C241T C2416T C3037T C3261M C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424846
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3878/2020
 C241T C2416T C3037T C14408T C17747Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424852
 2020-03-06 2020-04-13
 United States hCoV-19/USA/DC_0004/2020
 C8782T C16667Y C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424856
 2020-03-06 2020-04-13
 United States hCoV-19/USA/FL_9656/2020
 C8782T A16467G C17747T A17858G C18060T C23185T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424857
 2020-03-06 2020-04-13
 United States hCoV-19/USA/FL_1177/2020
 C241T C3037T C5467T C8389T C14408T A23403G T25245Y G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424867
 2020-03-06 2020-04-13
 United States hCoV-19/USA/KS_4126/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424870
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MO_4470/2020
 C241T C313T C3037T C13384T C14408T A23403G GGG28881AAC C29353T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424871
 2020-03-06 2020-04-13
 United States hCoV-19/USA/NC_6999/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424876
 2020-03-06 2020-04-13
 United States hCoV-19/USA/NH_0029/2020
 C241T C3037T C5007T C14408T C14554T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424877
 2020-03-06 2020-04-13
 United States hCoV-19/USA/NH_0033/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424886
 2020-03-06 2020-04-13
 United States hCoV-19/USA/PA_4405/2020
 C241T C3037T C14408T GG18505RK C18877T G19847A A23403G G25563T A28480T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424907
 2020-03-06 2020-04-13
 United States hCoV-19/USA/VA_6171/2020
 A361G C8782T G22468T T25559G T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424914
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_2652/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26109T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424915
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3614/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424916
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3616/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424917
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3623/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424918
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3626/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424920
 2020-03-06 2020-04-13
 United States hCoV-19/USA/MA_3653/2020
 C241T C2416T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425796
 2020-03-06 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425797
 2020-03-06 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20823T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425802
 2020-03-06 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425805
 2020-03-06 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425808
 2020-03-06 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426041
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11180-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426042
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11202-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C11651T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426043
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11284-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426044
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11291-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A8882G C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426045
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11344-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426046
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11353-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426047
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11354-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426048
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11379-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426049
 2020-03-06 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11380-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C4084T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426292
 2020-03-06 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-11207-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_427293
 2020-03-06 2020-04-18
 Brazil hCoV-19/Brazil/BA-510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G A26945T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_429139
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50123/2020
 C241T C3037T A12790G A13308G C13568T C14408T A23403G

EPI_ISL_429140
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50125/2020
 

EPI_ISL_429141
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50130/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429142
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50131/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429143
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50132/2020
 C241T C313T C3037T G4109A C14408T A23403G GGG28881AAC

EPI_ISL_429144
 2020-03-06 2020-04-23
 Sweden hCoV-19/Sweden/20-50133/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429239
 2020-03-06 2020-04-23
 China hCoV-19/Yunnan/0306-466/2020
 ATG1431- G15910T

EPI_ISL_429346
 2020-03-06 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI117/2020
 C241T C3037T C14408T A23403G

EPI_ISL_430124 MT627614
 2020-03-06 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S270/2020
 C8782T T15927G C17747T A17858G C18060T C18401T C26936T T28144C

EPI_ISL_430129 MT627624
 2020-03-06 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S275/2020
 C8782T C16887T C17747T A17858G C18060T T28144C

EPI_ISL_430141 MT627633
 2020-03-06 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S287/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430142 MT627629
 2020-03-06 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S288/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430278 MT632619
 2020-03-06 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S240/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430297
 2020-03-06 2020-04-26
 South Africa hCoV-19/South Africa/R02827/2020
 

EPI_ISL_430861
 2020-03-06 2020-04-28
 Sweden hCoV-19/Sweden/20-50129/2020
 C241T C3037T C10252T A12790G C13568T C14408T A23403G

EPI_ISL_435609
 2020-03-06 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC130/2020
 G29711T

EPI_ISL_437660
 2020-03-06 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-245/2020
 C241T C3037T C14408T A23403G

EPI_ISL_438009
 2020-03-06 2020-05-12
 Italy hCoV-19/Austria/CeMM0163/2020
 C241T C3037T G3994T C14408T T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438010
 2020-03-06 2020-05-12
 Austria hCoV-19/Austria/CeMM0165/2020
 C241T C3037T G12832A C14408T A23403G AG28877WS GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438011
 2020-03-06 2020-05-12
 Austria hCoV-19/Austria/CeMM0166/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_438012
 2020-03-06 2020-05-12
 Austria hCoV-19/Austria/CeMM0167/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC AAAA29900-

EPI_ISL_445245
 2020-03-06 2020-05-15
 Chile hCoV-19/Chile/Santiago_3/2020
 ATTAAAGGTTTA1- C8782T T9477A C14805T A15165R G25979T T28144C C28657T C28863T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_447841 MT472624
 2020-03-06 2020-05-14
 United States SARS-CoV-2/human/USA/FL-CDC-7619/2020
 C241T C683Y C3037T G4263K C4703Y A4725W C5184Y C5654Y A5891R C12123Y C14408T C14662Y C18877T A23403G G25563T G25696K G26596K C28475Y C28687Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452353
 2020-03-06 2020-05-27
 China hCoV-19/Beijing/DT-travelIT02/2020
 C241T C3037T T8022G C14408T C18568T A23403G

EPI_ISL_452763
 2020-03-06 2020-05-27
 Spain hCoV-19/Spain/COV000703/2020
 C8782T T9477A C14805T C15654T G25979T T28144C C28657T C28863T

EPI_ISL_452773
 2020-03-06 2020-05-27
 Spain hCoV-19/Spain/COV000691/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454464
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08092/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454465
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08093/2020
 C241T C843T C3037T C3743T C14408T T22153C G22583A A23403G

EPI_ISL_454466
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08094/2020
 C241T C843T C3037T C14408T G22583A A23403G

EPI_ISL_454467
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08095/2020
 C241T C3037T C14408T A23403G C24138T GGG28881AAC

EPI_ISL_454468
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08096/2020
 C241T C3037T C3373A C14408T C23271T A23403G GGG28881AAC

EPI_ISL_454469
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08098/2020
 C241T C3037T C14408T A23403G C24138T GGG28881AAC

EPI_ISL_454470
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08099/2020
 C241T C3037T C10377T C14408T T23084C A23403G GGG28881AAC

EPI_ISL_454471
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08100/2020
 C241T C3037T C9857T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454475
 2020-03-06 2020-05-28
 Sweden hCoV-19/Sweden/20-08104/2020
 C241T C3037T C14408T A23403G

EPI_ISL_454757
 2020-03-06 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10008/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_454889
 2020-03-06 2020-05-29
 Sweden hCoV-19/Sweden/20-50208/2020
 C241T C3037T C14408T C19718T G22583A A23403G

EPI_ISL_455323
 2020-03-06 2020-05-29
 Spain hCoV-19/Spain/Andalucia201636/2020
 AT1- T5077C A5222G T6998G A7015T C8782T TG8827AT T10962G G11083T C14805T T19346C T19713A T19826C A23403G C23707T T27384C T27560C A29285G

EPI_ISL_455595
 2020-03-06 2020-06-01
 Australia hCoV-19/Australia/VPRL002/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_455713
 2020-03-06 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_148/2020
 A1- A4G C241T C3037T GT5513A C14408T A23403G T27794A GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_455865
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50198/2020
 C241T C3037T C14408T A21875G A23403G C27046T GGG28881AAC T29834G

EPI_ISL_455866
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50199/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_455869
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50206/2020
 C241T C3037T C14408T G15850T G17658T G22583A A23403G

EPI_ISL_455870
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50209/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_455871
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50212/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455872
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50213/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_455875
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50218/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455876
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50219/2020
 C241T C3037T C14408T A23403G

EPI_ISL_455907
 2020-03-06 2020-06-01
 Sweden hCoV-19/Sweden/20-50266/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_457700
 2020-03-06 2020-06-02
 Italy hCoV-19/Italy/2629/2020
 ATTAAA1- C241T C3037T C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_460333 MT520408
 2020-03-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00428/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_464438
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/201080039/2020
 C241T C3037T C14408T G20434T A22625R A23403G C25350T C26858T

EPI_ISL_464444
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/201080053/2020
 C241T C3037T C14408T A23403G C27046T GGG28881RRS

EPI_ISL_464450
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/201080061/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_464464
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/201080081/2020
 G1397A G2246A C3817Y G11083T C27549Y T28688Y G29742T

EPI_ISL_464525
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/20109007104/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_464549
 2020-03-06 2020-06-11
 United Kingdom hCoV-19/England/20109028804/2020
 C241T C2638Y C2940T C3037T C14408T A23403G

EPI_ISL_466936 LR824043
 2020-03-06 2020-06-12
 Switzerland 100011
 C241T G284R C3037T C12896T C14408T A19298W G19481R T22384Y T22516W A23403G G25952R

EPI_ISL_466937 LR824045
 2020-03-06 2020-06-12
 Switzerland 100012
 C241T C3037T C12896T C14408T A19410R C19512Y C22445M T22516W A23403G

EPI_ISL_469077
 2020-03-06 2020-06-17
 Sweden hCoV-19/Sweden/20-50216/2020
 C241T C3037T C14408T AGC19005- A23403G C27046T C28344A GGG28881AAC

EPI_ISL_475871
 2020-03-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A4284M C17518Y A20255R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475877
 2020-03-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12832A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475886
 2020-03-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476796
 2020-03-06 2020-06-26
 Singapore hCoV-19/Singapore/27nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A7479G G11083T C14805T T17247C C25572T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476903 MT827812
 2020-03-06 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAA

EPI_ISL_479808
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C11752T C19170A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479816
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479837
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C11752T C19170A G28857T TTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29822-

EPI_ISL_479838
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A A29433G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479889
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T G17721T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480061
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G3179A C6982T C8782T G17523T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_480062
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480063
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_480064
 2020-03-06 2020-07-01
 Japan hCoV-19/Japan/PG-0395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_482576
 2020-03-06 2020-07-04
 China hCoV-19/Hangzhou/HZCDC6224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G9190T G11083T T14034C C14805T C16468T T17247C T19646C C24133T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486663
 2020-03-06 2020-07-10
 Italy hCoV-19/Italy/Hsacco-7/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_487269
 2020-03-06 2020-07-14
 Peru hCoV-19/Peru/Peru002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_488253
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488254
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3955T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488262
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488324
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3365T A6030G C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488364
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3955T C14408T A23403G C27046T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_488829
 2020-03-06 2020-07-14
 United Kingdom hCoV-19/England/NORT-2811C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G17658R G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489836
 2020-03-06 2020-07-14
 Peru hCoV-19/Peru/Peru003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_489837
 2020-03-06 2020-07-14
 Peru hCoV-19/Peru/Peru004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491431
 2020-03-06 2020-07-16
 Peru hCoV-19/Peru/INS-026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C813T C3037T C14408T A23403G G25429T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491438
 2020-03-06 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T C21638T A23403G G26143A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_497791
 2020-03-06 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1595A C7735T C9962T G11083T C11704T T13929C C14724T T21584G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500100
 2020-03-06 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4FC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC G29256T

EPI_ISL_500398
 2020-03-06 2020-07-28
 Spain hCoV-19/Spain/COV005964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C8980T T9477A C14805T G25979T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_506955
 2020-03-06 2020-08-02
 South Korea hCoV-19/Korea/KCDC2161/2020
 G5572T C10808T G11083T C14805T C21575T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_513314
 2020-03-06 2020-08-13
 Czech Republic hCoV-19/Czech Republic/NRL_1259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25563T G26109T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515293
 2020-03-06 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0004/2020
 ATTA1- G29711T

EPI_ISL_516634
 2020-03-06 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D665-6/2020
 ATT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516645
 2020-03-06 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D715-D799-17/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G G29254T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_523935
 2020-03-06 2020-08-27
 Germany hCoV-19/Germany/NW-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T17803K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525536
 2020-03-06 2020-08-31
 France hCoV-19/France/ARA06391/2020
 ATT1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_525579
 2020-03-06 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11171-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T T22795C A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525580
 2020-03-06 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11244-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T G7320A C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527739
 2020-03-06 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_530031
 2020-03-06 2020-09-10
 Spain hCoV-19/Spain/MD-LP104-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C9165T G9928T T21378C C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_538446
 2020-03-06 2020-09-17
 Singapore hCoV-19/Singapore/50nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A23359G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539503
 2020-03-06 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201596/2020
 T1483C C2836T G11071C G11083T G26144T

EPI_ISL_539504
 2020-03-06 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201597/2020
 T1483C C2836T G11071C G11083T G26144T

EPI_ISL_539509
 2020-03-06 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201687/2020
 G11071C G11083T C16466T G26144T

EPI_ISL_539510
 2020-03-06 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201688/2020
 T6549A A6551T G11071C G11083T C24382T G26144T

EPI_ISL_539532
 2020-03-06 2020-09-18
 Spain hCoV-19/Spain/CN-ISCIII-201810/2020
 A391G C635T A3245T T3360A C3792T T4579A A4860G A6063G C8645A T11134C C14805T T19616C T19843C G21280A A21487G T21539C T21656C C21678T T22917A A23013C A23880T A24500T T28144C C28657T C28863T T29760C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_547524
 2020-03-06 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547526
 2020-03-06 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566047
 2020-03-06 2020-10-01
 United Kingdom hCoV-19/England/201090128/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

GWHAORP01000001
 2020-03-06 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-CP3/2020
 C241T C313T C3037T C14408T T16254C A23403G A25497G

GWHAORQ01000001
 2020-03-06 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-CP4/2020
 C241T C1059T C3037T A23403G

MT325563
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/DC_0004/2020
 C8782T C16667Y C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325564
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/FL_1177/2020
 C241T C3037T C5467T C8389T C14408T A23403G T25245Y G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325568
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/FL_9656/2020
 C8782T A16467G C17747T A17858G C18060T C23185T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325580
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/KS_4126/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325583
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3672/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325584
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3699/2020
 C241T C2416T C3037T C3261M C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325585
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3878/2020
 C241T C2416T C3037T C14408T C17747Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325588
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MO_4470/2020
 C241T C313T C3037T C13384T C14408T A23403G GGG28881AAC C29353T AAAAAAAAAAAAAAAAAAAAA29883-

MT325591
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/NC_6999/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325594
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/NH_0029/2020
 C241T C3037T C5007T C14408T C14554T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325595
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/NH_0033/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAA29883-

MT325604
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/PA_4405/2020
 C241T C3037T C14408T GG18505RK C18877T G19847A A23403G G25563T A28480T AAAAAAAAAAAAAAAAAAAAA29883-

MT325606
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3569/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325616
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3623/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325628
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/VA_6171/2020
 A361G C8782T G22468T T25559G T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAA29883-

MT325635
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_2652/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26109T AAAAAAAAAAAAAAAAAAAAA29883-

MT325636
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3614/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

MT325637
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3616/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325638
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3626/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325640
 2020-03-06 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3653/2020
 C241T C2416T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT396241
 2020-03-06 2020-04-21
 China SARS-CoV-2/human/CHN/YN-0306-466/2020
 ATG1431- G15910T

EPI_ISL_414551
 2020-03-07 2020-03-13
 Netherlands hCoV-19/Netherlands/Utrecht_47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414552
 2020-03-07 2020-03-13
 Netherlands hCoV-19/Netherlands/Utrecht_46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414559 LR878303
 2020-03-07 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3145T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414589 MT188340
 2020-03-07 2020-03-13
 United States USA/MN2-MDH2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C C17410T AAAA29900-

EPI_ISL_414619
 2020-03-07 2020-03-15
 United States hCoV-19/USA/WA-UW32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGA1- C6317T C8782T C9693T C17747T A17858G C18060T T28144C

EPI_ISL_414621
 2020-03-07 2020-03-15
 United States hCoV-19/USA/WA-UW34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGG1- C8782T C17747T A17858G C18060T T28144C AAAAAAA29897-

EPI_ISL_414643
 2020-03-07 2020-03-15
 Finland hCoV-19/Finland/FIN-508/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_415491 LR878112
 2020-03-07 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415660
 2020-03-07 2020-03-19
 Chile hCoV-19/Chile/Santiago_op3d1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_415708
 2020-03-07 2020-03-19
 Switzerland hCoV-19/Switzerland/GE4984/2020
 ATTAAAGG1- C241T C3037T C13862T C14408T A23403G C28836T

EPI_ISL_416428
 2020-03-07 2020-03-21
 Vietnam hCoV-19/Vietnam/39607/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416432
 2020-03-07 2020-03-21
 Saudi Arabia hCoV-19/SaudiArabia/KAIMRC-Alghoribi/2020
 AT1CC A4G T10A T13A -16CTTA C6312A G11083T C13730T C23929T A25615G C28311T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_416455 MT252823
 2020-03-07 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATA1- C8782T TG9704CT C17747T A17858G C18060T T28144C -29904AAANANANDAA

EPI_ISL_416511
 2020-03-07 2020-03-22
 France hCoV-19/France/B2348/2020
 C241T C1059T C3037T A5608G C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_416512
 2020-03-07 2020-03-22
 France hCoV-19/France/B2349/2020
 C241T C1059T C3037T C14408T G21920A A23403G G25563T CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_416513
 2020-03-07 2020-03-22
 France hCoV-19/France/B2351/2020
 C241T C1059T C3037T C14408T C18928T G21920A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_416733
 2020-03-07 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFCEE/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_416757
 2020-03-07 2020-03-23
 France hCoV-19/France/Bourg-en-Bresse_06678/2020
 C241T C3037T C14408T C15324T G21724T A23403G C25433T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417007
 2020-03-07 2020-03-23
 Spain hCoV-19/Spain/Galicia201663/2020
 C241T C3037T C14408T A20268G A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_417009
 2020-03-07 2020-03-23
 Belgium hCoV-19/Belgium/ULG-3665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G11083T C14805T T17247C C22323T G26144T A29598G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417164 MT605817
 2020-03-07 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S111/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417186 MT324062
 2020-03-07 2020-04-10
 South Africa SARS-CoV-2/human/ZAF/R03006/2020
 C241T C3037T C13620T C14408T C21595T A23403G

EPI_ISL_417276
 2020-03-07 2020-03-25
 United Kingdom hCoV-19/England/20109052506/2020
 G1125A ATG1605- C3787T C27911T

EPI_ISL_417279
 2020-03-07 2020-03-25
 United Kingdom hCoV-19/England/20109053606/2020
 C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC G29392T

EPI_ISL_417280
 2020-03-07 2020-03-25
 United Kingdom hCoV-19/England/20109054806/2020
 C21T A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_417337
 2020-03-07 2020-03-25
 France hCoV-19/France/Lyon_06625/2020
 C241T C3037T A11935C C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417338
 2020-03-07 2020-03-25
 France hCoV-19/France/Macon_06756/2020
 C241T C1059T C1684T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417340
 2020-03-07 2020-03-25
 France hCoV-19/France/Bourg-en-Bresse_06813/2020
 C241T C1059T C3037T C3176T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417705
 2020-03-07 2020-03-27
 Iceland hCoV-19/Iceland/65/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417855
 2020-03-07 2020-03-27
 Iceland hCoV-19/Iceland/63/2020
 C241T C1059T C3037T C14408T G20419T A23403G G25563T

EPI_ISL_417857
 2020-03-07 2020-03-27
 Iceland hCoV-19/Iceland/66/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417878
 2020-03-07 2020-03-27
 Slovakia hCoV-19/Slovakia/SK-BMC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_417992
 2020-03-07 2020-03-28
 Portugal hCoV-19/Portugal/PT0007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3373A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417997
 2020-03-07 2020-03-28
 Portugal hCoV-19/Portugal/PT0012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417999
 2020-03-07 2020-03-28
 Portugal hCoV-19/Portugal/PT0014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418013
 2020-03-07 2020-03-28
 Portugal hCoV-19/Portugal/PT0028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3373A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418334
 2020-03-07 2020-03-07
 Canada hCoV-19/Canada/ON_PHL4069/2020
 A1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418346
 2020-03-07 2020-03-07
 Canada hCoV-19/Canada/ON_PHL0743/2020
 A1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418349
 2020-03-07 2020-03-07
 Canada hCoV-19/Canada/ON_PHL3650/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418371
 2020-03-07 2020-03-07
 Canada hCoV-19/Canada/ON_PHL2653/2020
 A1- C241T C3037T C9246T C14408T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418667
 2020-03-07 2020-03-30
 United Kingdom hCoV-19/England/20109047803/2020
 C241T C3037T C14408T A23403G

EPI_ISL_418852
 2020-03-07 2020-03-31
 Canada hCoV-19/Canada/BC_8718874/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_419235
 2020-03-07 2020-04-01
 Spain hCoV-19/Spain/Madrid201706/2020
 C241T C3037T G11719A C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419237
 2020-03-07 2020-04-01
 Spain hCoV-19/Spain/Madrid201738/2020
 G11083T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419736 MT450932
 2020-03-07 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419737 MT450933
 2020-03-07 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC18/2020
 ATTAA1- A2480G C2558T T6971C G6975T G6977A C8895Y C9170T G11083T C14805T C23034G G26144T

EPI_ISL_420316
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/QOJ-030751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T A4050C T8022G T13002C C14408T CA23266AG A23403G G23441C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420318
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/TG-030757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C5886T A12307G T13402G C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_420323
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/BJ-030767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12880T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420327
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/HL-030771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23393T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420352
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/DCS-030796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420450
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/KN-030756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4050C T13402G T13408C C14408T C15324T C15371T A23403G G28690T T28785G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420451
 2020-03-07 2020-04-06
 Belgium hCoV-19/Belgium/HC-030760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4255T G8687A T13402G C14408T T16456G A23403G A26530G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420600
 2020-03-07 2020-04-06
 Argentina hCoV-19/Argentina/C121/2020
 A26C C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422804 LR878113
 2020-03-07 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C T21462C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424342 MT528237
 2020-03-07 2020-04-12
 Italy SARS-CoV-2/human/ITA/INMI8/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G C23575T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_424842
 2020-03-07 2020-04-13
 United States hCoV-19/USA/SC_3575/2020
 T490A C3177T C8782T C16466T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424847
 2020-03-07 2020-04-13
 United States hCoV-19/USA/MA_4811/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424850
 2020-03-07 2020-04-13
 United States hCoV-19/USA/IL_0087/2020
 C241T C3037T C10507T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424851
 2020-03-07 2020-04-13
 United States hCoV-19/USA/IL_0089/2020
 C8782T G16396T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424873
 2020-03-07 2020-04-13
 United States hCoV-19/USA/NC_0031/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424875
 2020-03-07 2020-04-13
 United States hCoV-19/USA/NE_7025/2020
 G1440A G2891A C12651T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424883
 2020-03-07 2020-04-13
 United States hCoV-19/USA/PA_2317/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424890
 2020-03-07 2020-04-13
 United States hCoV-19/USA/UT_8906/2020
 C241T C379A C1059T C3037T C14408T GG18505RK A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424899
 2020-03-07 2020-04-13
 United States hCoV-19/USA/IA_6391/2020
 C241T C3037T C14408T G22335T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424900
 2020-03-07 2020-04-13
 United States hCoV-19/USA/IA_6390/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424903
 2020-03-07 2020-04-13
 United States hCoV-19/USA/SC_3570/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424904
 2020-03-07 2020-04-13
 United States hCoV-19/USA/SC_3571/2020
 T490A C3177T C8782T T11635C T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424919
 2020-03-07 2020-04-13
 United States hCoV-19/USA/MA_3642/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425798
 2020-03-07 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G14829K A23403G C25350T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425804
 2020-03-07 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13694T C14408T A23403G C28310T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426417 MT344945
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/GA_2070/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426421 MT344949
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/HI_7881/2020
 C8717Y C8782T C14724T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426422 MT344950
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/IN_72003/2020
 C241T C2416T C3037T C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426427 MT344962
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/MN_0101/2020
 T514C ATG1605- C17410T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_426429 MT344961
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/NV_0016/2020
 ATG1605- C20270T A29683T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426431 MT344956
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/OH_0020/2020
 C241T GTTATG515- C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426432 MT344957
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/PA_2734/2020
 C241T GTTATG515- C3037T C14408T C18877T A23403G C25516T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426433 MT344958
 2020-03-07 2020-04-15
 United States SARS-CoV-2/human/USA/PA_2735/2020
 C241T GTTATG515- C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427370
 2020-03-07 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10122/2020
 C241T C3037T C5974T C8394T C12469T C14408T C15277T C15324T A23403G

EPI_ISL_428676
 2020-03-07 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP19_4952/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3037T C8782T A20268G A23403G C26088T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_429339
 2020-03-07 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI107/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429340
 2020-03-07 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI108/2020
 C241T C3037T A8072G C14408T A23403G

EPI_ISL_430064
 2020-03-07 2020-04-25
 Australia hCoV-19/Australia/VIC-CBA4/2020
 C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_430291 MT632593
 2020-03-07 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S253/2020
 C8782T C17747T A17858G C18060T C20235T T28144C

EPI_ISL_434687
 2020-03-07 2020-05-01
 United States hCoV-19/USA/DC-HP00006/2020
 C241T C2416T C3037T A3094G C14408T A23403G G25563T

EPI_ISL_435303
 2020-03-07 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_022/2020
 ATTAA1- C241T C3037T C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_435305
 2020-03-07 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_435612
 2020-03-07 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC133/2020
 C26601T

EPI_ISL_435615
 2020-03-07 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC136/2020
 C26032T G29711T

EPI_ISL_437210
 2020-03-07 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0009/2020
 C241T C3037T C14408T A23403G C27046T G27762T GGG28881AAC

EPI_ISL_437895 MT459899
 2020-03-07 2020-05-11
 Greece SARS-CoV-2/human/GRC/236_31815/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C2508T G9190T G11083T C12213T C14805T G15919T T17247C G26144T G26172A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438013
 2020-03-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0168/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_438014
 2020-03-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0169/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC

EPI_ISL_438015
 2020-03-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0170/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438016
 2020-03-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0171/2020
 C241T C3037T T4747Y G12832A C14408T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_438017
 2020-03-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0172/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_447842 MT472626
 2020-03-07 2020-05-14
 United States SARS-CoV-2/human/USA/IA-CDC-8200/2020
 C241T C3037T C14408T G22335T A23403G G28931A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450116
 2020-03-07 2020-05-20
 United States hCoV-19/USA/NY-PV09439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_452100
 2020-03-07 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-99/2020
 C241T C3037T A8072G C14408T A23403G GGG28881AAC

EPI_ISL_452125 MT512425
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/GA-CDC-2059/2020
 T490A C3177T C6720T C8782Y T18736C C24034T T26729C G28077S T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452127 MT512427
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/CO-CDC-5610/2020
 C8782Y A12787G C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452130 MT512430
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/CO-CDC-5607/2020
 C9803T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452345
 2020-03-07 2020-05-27
 China hCoV-19/Beijing/DT-travelES03/2020
 C241T C3037T C14408T A20268G C20897T T20901C A23403G

EPI_ISL_452354
 2020-03-07 2020-05-27
 China hCoV-19/Beijing/DT-travelIT03/2020
 C241T C3037T T8022G C14408T C18568T T20891G A23403G

EPI_ISL_452452
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV001922/2020
 C8782T T9477A C11674Y C14805T G25979T T28144C C28657T C28863T T29148Y G29402T

EPI_ISL_452742
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000738/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452744
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000736/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_452747
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000728/2020
 C8782T T9477A C14805T G19086K A23586G G25979T T28144C C28657T C28863T C29870A

EPI_ISL_452748
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000727/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452749
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000721/2020
 G343K C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452755
 2020-03-07 2020-05-27
 Spain hCoV-19/Spain/COV000712/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454436
 2020-03-07 2020-05-28
 Sweden hCoV-19/Sweden/20-08040/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_454472
 2020-03-07 2020-05-28
 Sweden hCoV-19/Sweden/20-08101/2020
 C241T C3037T A12358T C14408T A23403G GGG28881AAC

EPI_ISL_454473
 2020-03-07 2020-05-28
 Sweden hCoV-19/Sweden/20-08102/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454474
 2020-03-07 2020-05-28
 Sweden hCoV-19/Sweden/20-08103/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454494
 2020-03-07 2020-05-28
 Sweden hCoV-19/Sweden/20-08045/2020
 C241T C3037T C14408T A23403G G29140T

EPI_ISL_454890
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50220/2020
 C241T C3037T C11866T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454891
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50222/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454892
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50224/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC A28995T

EPI_ISL_454893
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50227/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_454896
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50260/2020
 C241T C3037T C14408T C23393T A23403G

EPI_ISL_454903
 2020-03-07 2020-05-29
 Sweden hCoV-19/Sweden/20-50268/2020
 C241T C3037T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_455874
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50217/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455877
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50221/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_455879
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50229/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455880
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50238/2020
 C241T A2292G C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_455881
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50240/2020
 C241T C3037T C14408T C23393T A23403G G29639A

EPI_ISL_455882
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50241/2020
 C241T G509A C3037T C14408T G17658T G22583A A23403G

EPI_ISL_455883
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50242/2020
 C241T C3037T C3373A C5654T C14408T G19962T A23403G C24034T GGG28881AAC

EPI_ISL_455885
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50245/2020
 C241T C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_455886
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50246/2020
 C241T A2292G C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_455889
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50250/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_455890
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50251/2020
 C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC

EPI_ISL_455892
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50254/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455893
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50255/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455894
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50256/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455897
 2020-03-07 2020-06-01
 Sweden hCoV-19/Sweden/20-50259/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_457796 MT646069
 2020-03-07 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00052/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_457797 MT646117
 2020-03-07 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00054/2020
 C241T C1059T C3037T G12191K C14408T A23403G G25563T

EPI_ISL_460103 MT520178
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00426/2020
 ATTAAAG1- C241T C2416T C3037T C14408T A23403G G25563T G26849T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460117 MT520192
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00417/2020
 ATTAAAGGTTTATA1- C241T C2416T C3037T C14408T A23403G G25563T C26681T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460212 MT520287
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460235 MT520310
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460239 MT520314
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00437/2020
 ATTAAA1- C241T C2416T C3037T G12361T C14408T A17399C A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460241 MT520316
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00415/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_460245 MT520320
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00420/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460266 MT520341
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C2416T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460300 MT520375
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00419/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_460313 MT520388
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00425/2020
 ATTAAAGGTTTATAC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460321 MT520396
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00443/2020
 ATTAAA1- C241T C2416T C3037T G12361T C14408T A17399C C18929T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_460353 MT520428
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00416/2020
 ATTAAAG1- C241T C2416T C3037T C10015T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460366 MT520441
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00430/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460371 MT520446
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00418/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460384 MT520459
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00422/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460397 MT520472
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00424/2020
 ATTAAAGGTTTATACCTT1- C241T C2416T C3037T G5461T C14408T A23403G G25563T G26233T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_460434 MT520509
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00439/2020
 ATTAAAGGTTT1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460442 MT520517
 2020-03-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00432/2020
 ATTAAAGGTTTATAC1- C241T C2416T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_469078
 2020-03-07 2020-06-17
 Sweden hCoV-19/Sweden/20-50261/2020
 C241T C3037T G11761T C14408T A23403G C27046T GGG28881AAC -29708GAGCTGC

EPI_ISL_475549
 2020-03-07 2020-06-23
 Sweden hCoV-19/Sweden/20-08046/2020
 G1397A A7970G G14653A C18788T T28688C G29742T

EPI_ISL_475872
 2020-03-07 2020-06-25
 Austria hCoV-19/Austria/CeMM0461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475878
 2020-03-07 2020-06-25
 Austria hCoV-19/Austria/CeMM0473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479817
 2020-03-07 2020-07-01
 Japan hCoV-19/Japan/PG-0054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C11752T C12068T C19170A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479818
 2020-03-07 2020-07-01
 Japan hCoV-19/Japan/PG-0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C11752T C12068T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479839
 2020-03-07 2020-07-01
 Japan hCoV-19/Japan/PG-0095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C11752T C12068T C19170A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479840
 2020-03-07 2020-07-01
 Japan hCoV-19/Japan/PG-0097/2020
 ATTAAAGGTTTATACC1- C11752T C19170A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479903
 2020-03-07 2020-07-01
 Japan hCoV-19/Japan/PG-0200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_482577
 2020-03-07 2020-07-04
 China hCoV-19/Hangzhou/HZCDC6228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C23575T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483547
 2020-03-07 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C835T C884T G1397A G8653T G11083T G23426A T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_488277
 2020-03-07 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F7AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T24814C C27046T C28814G GGG28881AAC C29784T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488355
 2020-03-07 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F69F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11321A C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491437
 2020-03-07 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1059T C3037T C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_500109
 2020-03-07 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2558T G11083T C14805T G26144T

EPI_ISL_500400
 2020-03-07 2020-07-28
 Spain hCoV-19/Spain/COV005966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C8980T T9477A C14805T G25979T T28144C C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_500401
 2020-03-07 2020-07-28
 Spain hCoV-19/Spain/COV005967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C8980T T9477A C14805T G25979T T28144C C28657T C28863T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_506954
 2020-03-07 2020-08-02
 South Korea hCoV-19/Korea/KCDC2160/2020
 ATT1- C241T G1820A G5572T G11083T C14805T C21575T G22592T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510265
 2020-03-07 2020-08-06
 Spain hCoV-19/Spain/COV003176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C10078T C14408T C16726T A23403G G25563T

EPI_ISL_516626
 2020-03-07 2020-08-21
 Peru hCoV-19/Peru/INS-087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C813T G1212T C3037T C14408T A23403G G25429T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_516629
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D712-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_516630
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D666-2/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_516631
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D718-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_516632
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D672-4/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516635
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D667-7/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516636
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D671-8/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_516638
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D710-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T G20469R A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_516640
 2020-03-07 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D717-D761-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T A14801R A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_523927
 2020-03-07 2020-08-27
 Germany hCoV-19/Germany/NW-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523949
 2020-03-07 2020-08-27
 Germany hCoV-19/Germany/NW-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525581
 2020-03-07 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11509-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TA27267- TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525582
 2020-03-07 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11513-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525583
 2020-03-07 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11537-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525584
 2020-03-07 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11538-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_529033
 2020-03-07 2020-09-09
 United States hCoV-19/USA/NY-Wadsworth-11460-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T C17010A C21575T G26144T C26985A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_530032
 2020-03-07 2020-09-10
 Spain hCoV-19/Spain/MD-LP104-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5274T C14408T A18001C A20268G C21304T A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_537412
 2020-03-07 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C14805T G25979T A28024W T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539506
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201665/2020
 T8392C A8897G G11083T G26144T

EPI_ISL_539507
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201672/2020
 G11083T T12826A

EPI_ISL_539508
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201673/2020
 G11083T G26144T

EPI_ISL_539511
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201692/2020
 G11083T G26144T

EPI_ISL_539512
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201693/2020
 C4543T G11071C G11083T G26144T

EPI_ISL_539513
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201779/2020
 C106T C4543T T8057C G11071C C11074T G11083T G26144T

EPI_ISL_539514
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201780/2020
 G11071C G11083T G26144T

EPI_ISL_539559
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201654/2020
 A15657G T28144C C29485A C29603A

EPI_ISL_539560
 2020-03-07 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201655/2020
 G11083T G26144T

EPI_ISL_566048
 2020-03-07 2020-10-01
 United Kingdom hCoV-19/England/201090129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A11755G C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_569244
 2020-03-07 2020-10-02
 France hCoV-19/France/IHU-0014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT325577
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/IL_0087/2020
 C241T C3037T C10507T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325578
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/IL_0089/2020
 C8782T G16396T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325586
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/MA_4811/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

MT325590
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/NC_0031/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325593
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/NE_7025/2020
 G1440A G2891A C12651T AAAAAAAAAAAAAAAAAAAAA29883-

MT325601
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/PA_2317/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325607
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3575/2020
 T490A C3177T C8782T C16466T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325610
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/UT_8906/2020
 C241T C379A C1059T C3037T C14408T GG18505RK A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325615
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6391/2020
 C241T C3037T C14408T G22335T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325621
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6390/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325624
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3570/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325625
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/SC_3571/2020
 T490A C3177T C8782T T11635C T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325639
 2020-03-07 2020-04-10
 United States SARS-CoV-2/human/USA/MA_3642/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

MT459898
 2020-03-07 2020-05-11
 Greece SARS-CoV-2/human/GRC/235_31783/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT509463
 2020-03-07 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T A3094G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_414536 LR878319
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C6255T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414537 LR878326
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C6255T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414539 LR878336
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C6255T G25252T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414554 LR878314
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/Utrecht_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414555 LR878309
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/Utrecht_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6255T C8782T G16381A T28144C G28878A G29742A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414557 LR878289
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3145T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414564 LR878308
 2020-03-08 2020-03-13
 Netherlands hCoV-19/Netherlands/ZuidHolland_22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414616
 2020-03-08 2020-03-15
 United States hCoV-19/USA/WA-UW29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_414617
 2020-03-08 2020-03-15
 United States hCoV-19/USA/WA-UW30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- T150C T153G C8782T C17747T A17858G C18060T A26530G T28144C G29422A A29903-

EPI_ISL_414618
 2020-03-08 2020-03-15
 United States hCoV-19/USA/WA-UW31/2020
 TA3BD C8782T C10369T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_414620
 2020-03-08 2020-03-15
 United States hCoV-19/USA/WA-UW33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAA1- C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_414642
 2020-03-08 2020-03-15
 Finland hCoV-19/Finland/FIN-455/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_415478 LR878087
 2020-03-08 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G210T A2480G C2558T G11083T C14805T G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415479 LR878074
 2020-03-08 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- G9314T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415481 LR878084
 2020-03-08 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C6255T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415606 MT252802
 2020-03-08 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- G261B C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAA29892-

EPI_ISL_415608 MT252804
 2020-03-08 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW43/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C6310T C8782T C17747T A17858G C18060T G27327T T28144C -29904AANANANADA

EPI_ISL_415609 MT252805
 2020-03-08 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW44/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AACC34TTTA C6310T C8782T C17747T A17858G C18060T G27327T T28144C GA29868CT -29904ANANNAAT

EPI_ISL_415615 MT252810
 2020-03-08 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- T2153A A3889G C8782T C17747T A17858G C18060T C27167T T28144C

EPI_ISL_415616 MT252811
 2020-03-08 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATC1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_415640
 2020-03-08 2020-03-18
 United Kingdom hCoV-19/Scotland/EDB003/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_415661
 2020-03-08 2020-03-19
 Chile hCoV-19/Chile/Santiago_op4d1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_415707
 2020-03-08 2020-03-19
 Switzerland hCoV-19/Switzerland/GE6679/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_416477
 2020-03-08 2020-03-22
 Georgia hCoV-19/Georgia/Tb-390/2020
 ATT1- C8782T T9477A C14805T G15359A G25979T T28144C C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_416493
 2020-03-08 2020-03-22
 France hCoV-19/France/HF2196/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416758
 2020-03-08 2020-03-23
 France hCoV-19/France/Lyon_0693/2020
 C241T C337T C3037T T9208C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417017
 2020-03-08 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T C9438T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417165 MT605815
 2020-03-08 2020-03-24
 United States SARS-CoV-2/human/USA/WA-S112/2020
 C8782T C17747T A17858G C18060T C18894T T28144C

EPI_ISL_417265
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20109050406/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_417291
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20109094206/2020
 G11083T C14267T C14805T T17247C C24023T G26144T

EPI_ISL_417293
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20109097506/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417295
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20109098806/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417299
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20109099206/2020
 C241T C3037T C3373A C14408T C14688T A23403G GGG28881AAC

EPI_ISL_417312
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20110059306/2020
 ATG1605- C1912T A19953M

EPI_ISL_417313
 2020-03-08 2020-03-25
 United Kingdom hCoV-19/England/20110097506/2020
 ATG1605- C14621T

EPI_ISL_417339
 2020-03-08 2020-03-25
 France hCoV-19/France/Lyon_06820/2020
 C241T C3037T A11935C C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417390
 2020-03-08 2020-03-25
 Australia hCoV-19/Australia/NSW27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3732T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417391
 2020-03-08 2020-03-25
 Australia hCoV-19/Australia/NSW28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T T9743C G11083T G14122T C18928T T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417393
 2020-03-08 2020-03-25
 Australia hCoV-19/Australia/NSW35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1397A C2113T T9574C G11071C C11074T G11083T C18928T T28688C G29374A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417728
 2020-03-08 2020-03-27
 Iceland hCoV-19/Iceland/70/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC T29104C

EPI_ISL_417749
 2020-03-08 2020-03-27
 Iceland hCoV-19/Iceland/69/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417880
 2020-03-08 2020-03-27
 Slovakia hCoV-19/Slovakia/SK-BMC6/2020
 T514C ATG1605- C17410T TG29867WR

EPI_ISL_417991
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0006b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C28310T C29144T T29446C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417993
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417994
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25791T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417995
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3373A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417996
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_417998
 2020-03-08 2020-03-28
 Portugal hCoV-19/Portugal/PT0013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418224
 2020-03-08 2020-03-29
 France hCoV-19/France/HF2150/2020
 C241T C1059T C3037T C14408T A23403G G25563T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418225
 2020-03-08 2020-03-29
 France hCoV-19/France/HF2155/2020
 C241T C2416T C3037T C6666T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418242
 2020-03-08 2020-03-29
 Algeria hCoV-19/Algeria/G0640_2265/2020
 C241T C1059T C3037T C10582T C14408T A23403G G25563T C29353T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_418322
 2020-03-08 2020-03-08
 Canada hCoV-19/Canada/ON_PHL3917/2020
 A1- G1397A G11083T T22032C T28688C G29742T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418331
 2020-03-08 2020-03-08
 Canada hCoV-19/Canada/ON_PHL6883/2020
 A1- A2500G C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418348
 2020-03-08 2020-03-08
 Canada hCoV-19/Canada/ON_PHL3680/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T G28368A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418355
 2020-03-08 2020-03-08
 Canada hCoV-19/Canada/ON_PHLU8150/2020
 A1- C241T C3037T C14408T A23403G G29254T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418580
 2020-03-08 2020-03-30
 Ireland hCoV-19/Ireland/Dublin-22361/2020
 C241T C3037T A3558G C14408T A15914G A23403G GGG28881AAC

EPI_ISL_418581
 2020-03-08 2020-03-30
 Ireland hCoV-19/Ireland/Dublin-22428/2020
 C241T C3037T C6628T C14408T A23403G GGG28881AAC

EPI_ISL_419260 MT322401
 2020-03-08 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0008/2020
 ATT1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_419296 LC547518
 2020-03-08 2020-04-02
 Japan hCoV-19/Japan/P1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419578
 2020-03-08 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS2614631/2020
 C241T C3037T G11083K C14408T C15324T C16551M A19397W A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419741 MT450935
 2020-03-08 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC20/2020
 ATTAAAGGTTTATACCTTC1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_421173
 2020-03-08 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_1703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11704T C14408T G15327T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_422805 LR878118
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422807 LR878119
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422808 LR878132
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C13119T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422811 LR878145
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422818 LR878133
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422819 LR878149
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T4427C C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422864
 2020-03-08 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424861
 2020-03-08 2020-04-13
 United States hCoV-19/USA/GA_2118/2020
 T490A C3177T C8782T G14118A T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424865
 2020-03-08 2020-04-13
 United States hCoV-19/USA/IA_6394/2020
 C241T T3011C C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424872
 2020-03-08 2020-04-13
 United States hCoV-19/USA/NC_0024/2020
 C241T C2416T C3037T C14408T G14707K A23403G G25563T G26233T G28812K AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424880
 2020-03-08 2020-04-13
 United States hCoV-19/USA/OH_0023/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424884
 2020-03-08 2020-04-13
 United States hCoV-19/USA/PA_2937/2020
 C241T C2416T C3037T C14408T T15393Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424888
 2020-03-08 2020-04-13
 United States hCoV-19/USA/SC_6370/2020
 T490A C3177T C6525Y C8782T C8956T C17074Y T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424891
 2020-03-08 2020-04-13
 United States hCoV-19/USA/VA_6352/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424892
 2020-03-08 2020-04-13
 United States hCoV-19/USA/VA_6377/2020
 C241T C3037T C14408T GG18505RK C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424893
 2020-03-08 2020-04-13
 United States hCoV-19/USA/VA_6382/2020
 C8782T C17747T A17858G C18060T G18756K T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424894
 2020-03-08 2020-04-13
 United States hCoV-19/USA/VA_6389/2020
 C241T C3037T G11417T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424895
 2020-03-08 2020-04-13
 United States hCoV-19/USA/IA_6396/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424896
 2020-03-08 2020-04-13
 United States hCoV-19/USA/IA_6395/2020
 C241T T3011C C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424897
 2020-03-08 2020-04-13
 United States hCoV-19/USA/IA_6401/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424898
 2020-03-08 2020-04-13
 United States hCoV-19/USA/IA_6399/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426050
 2020-03-08 2020-04-14
 United States hCoV-19/USA/NY-Wadsworth-11666-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426290
 2020-03-08 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-11735-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426291
 2020-03-08 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-11717-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C8770Y C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426311
 2020-03-08 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-11736-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426416 MT344944
 2020-03-08 2020-04-15
 United States SARS-CoV-2/human/USA/CT_9849/2020
 C241Y C1059Y C8782T G13571K T16857Y C17747Y A17858G C18060T A23403R G24933K T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426423 MT344951
 2020-03-08 2020-04-15
 United States SARS-CoV-2/human/USA/IN_82003/2020
 C241T C2416T C3037T C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426428 MT344963
 2020-03-08 2020-04-15
 United States SARS-CoV-2/human/USA/NC_0025/2020
 G204K C241T C2416T C3037T G3638R C4543T G11042S C14408T A23403G T24412Y G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426430 MT344955
 2020-03-08 2020-04-15
 United States SARS-CoV-2/human/USA/OH_0019/2020
 C241T GTTATG515- C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426434 MT344959
 2020-03-08 2020-04-15
 United States SARS-CoV-2/human/USA/PA_2887/2020
 C241T C1059T C3037T C13994Y C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_428678
 2020-03-08 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP22_5885/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3037T C8782T A20268G A23403G C26088T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_428679
 2020-03-08 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP23_5852/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T T17126C A20268G A23403G -29826T -29861T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_428823
 2020-03-08 2020-04-22
 Singapore hCoV-19/Singapore/44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- T9542Y G9950R C14029Y AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_428828
 2020-03-08 2020-04-22
 Singapore hCoV-19/Singapore/49/2020
 ATTA1- C241T C3037T C14408T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_428829
 2020-03-08 2020-04-22
 Singapore hCoV-19/Singapore/50/2020
 A23359G AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_429145
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50170/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429146
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50171/2020
 C241T G1306T C3037T G11535T A12790G C13568T C14408T A23403G

EPI_ISL_429147
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50172/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429148
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50173/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429150
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50175/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429151
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50176/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429152
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50179/2020
 C241T C2416T C3037T C14408T G21746T A23403G G25563T

EPI_ISL_429153
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50180/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429154
 2020-03-08 2020-04-23
 Sweden hCoV-19/Sweden/20-50181/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429337
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI105/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429342
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI110/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429344
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI113/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429348
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI119/2020
 C241T C1059T C3037T C5886T C14408T G20419T A23403G G25563T

EPI_ISL_429349
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI120/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429350
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI121/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429351
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI122/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429352
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI123/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429353
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI125/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429354
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI126/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429355
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI128/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429356
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI129/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429357
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI132/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429497
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI404/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429499
 2020-03-08 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI405/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_430128 MT627616
 2020-03-08 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S274/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_430270 MT632502
 2020-03-08 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S232/2020
 G2840A C8782T C17747T A17858G C18060T C23029T A26045G T28144C

EPI_ISL_430293 MT632575
 2020-03-08 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S255/2020
 G2840A C8782T C17747T A17858G C18060T A26045G T28144C

EPI_ISL_430862
 2020-03-08 2020-04-28
 Sweden hCoV-19/Sweden/20-50185/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434127 MT632951
 2020-03-08 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S367/2020
 C8782T C17747T A17858G C18060T C18894T T28144C

EPI_ISL_436061 MT434794
 2020-03-08 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0319NYC/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436072 MT434816
 2020-03-08 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0592NYC/2020
 C241T ATG518- C1059T C6578T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_437244
 2020-03-08 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0045/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437642
 2020-03-08 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-133/2020
 C241T T658C C3037T C14408T A23403G A24862G C28629T

EPI_ISL_437647
 2020-03-08 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-135/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_437648
 2020-03-08 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-136/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437649
 2020-03-08 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-137/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437650
 2020-03-08 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-138/2020
 C241T C1059T C3037T A6133G C14408T G20419T A23403G G25563T C27707T

EPI_ISL_437896 MT459900
 2020-03-08 2020-05-11
 Greece SARS-CoV-2/human/GRC/237_31890/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18877T A23403G A24367G G25563T G25855T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438018
 2020-03-08 2020-05-12
 Austria hCoV-19/Austria/CeMM0175/2020
 C241T G2809K C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438019
 2020-03-08 2020-05-12
 Austria hCoV-19/Austria/CeMM0176/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAA29888-

EPI_ISL_438020
 2020-03-08 2020-05-12
 Austria hCoV-19/Austria/CeMM0177/2020
 C241T C3037T G12832A C14408T C20457T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438233
 2020-03-08 2020-05-12
 United States hCoV-19/USA/MD-HP00075/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_445247
 2020-03-08 2020-05-15
 Chile hCoV-19/Chile/Santiago_4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C8782T T9477A C14805T G25979T C27727A C28087Y T28144C A28416T C28657T C28863T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_447840 MT472627
 2020-03-08 2020-05-14
 United States SARS-CoV-2/human/USA/DC-CDC-0019/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_447844 MT472621
 2020-03-08 2020-05-14
 United States SARS-CoV-2/human/USA/PA-CDC-2908/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_447845 MT472625
 2020-03-08 2020-05-14
 United States SARS-CoV-2/human/USA/PR-CDC-3578/2020
 C241T C3037T C5284Y T8647Y C11339Y T12629C C14408T C17649Y A23403G C25731Y C27161Y T29470A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450119
 2020-03-08 2020-05-20
 United States hCoV-19/USA/NY-PV09442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T G10523C C12119T C14408T C18086A A23403G G25563T TTAAAGTTTCCATTTGGAATCTTGATTACATCATA27266- AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450405 MT276600
 2020-03-08 2020-04-02
 China SARS-CoV-2/human/HKG/case113_VM2003179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1595A C9962T C11704T T13929C C14724T T21584G G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_451989
 2020-03-08 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-102/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451990
 2020-03-08 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-104/2020
 C241T C3037T C14408T A23403G C23575T G23587C C24374T

EPI_ISL_452126 MT512426
 2020-03-08 2020-05-26
 United States SARS-CoV-2/human/USA/NC-CDC-0034/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452128 MT512428
 2020-03-08 2020-05-26
 United States SARS-CoV-2/human/USA/CO-CDC-5667/2020
 C8782Y G11583K A12787G C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452717
 2020-03-08 2020-05-27
 Spain hCoV-19/Spain/COV000805/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_452738
 2020-03-08 2020-05-27
 Spain hCoV-19/Spain/COV000750/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454437
 2020-03-08 2020-05-28
 Sweden hCoV-19/Sweden/20-08042/2020
 C241T C3037T G11761T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454438
 2020-03-08 2020-05-28
 Sweden hCoV-19/Sweden/20-08043/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_454478
 2020-03-08 2020-05-28
 Sweden hCoV-19/Sweden/20-08107/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454485
 2020-03-08 2020-05-28
 Sweden hCoV-19/Sweden/20-08114/2020
 C241T C3037T C14408T C23086T A23403G C27046T GGG28881AAC

EPI_ISL_454495
 2020-03-08 2020-05-28
 Sweden hCoV-19/Sweden/20-08047/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC G29711T

EPI_ISL_454894
 2020-03-08 2020-05-29
 Sweden hCoV-19/Sweden/20-50248/2020
 C241T C3037T G12079A C14408T G15598T C16260T A23403G GGG28881AAC

EPI_ISL_454895
 2020-03-08 2020-05-29
 Sweden hCoV-19/Sweden/20-50252/2020
 C241T C3037T T9544C C14408T A23403G C26894T GGG28881AAC

EPI_ISL_455845
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-08179/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_455878
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50223/2020
 C241T C3037T C14408T A23403G

EPI_ISL_455884
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50244/2020
 C241T C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_455887
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50247/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455888
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50249/2020
 C241T C3037T C14408T A23403G C25782T GGG28881AAC

EPI_ISL_455891
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50253/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455895
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50257/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455896
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50258/2020
 C241T C3037T C14408T G15598T A23403G GGG28881AAC

EPI_ISL_455904
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50270/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_455906
 2020-03-08 2020-06-01
 Sweden hCoV-19/Sweden/20-50274/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_457826
 2020-03-08 2020-06-02
 Italy hCoV-19/Italy/AMC2-1245/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G A26530G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_460252 MT520327
 2020-03-08 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00435/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_460354 MT520429
 2020-03-08 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00444/2020
 ATTAAAGGTTTATACC1- C241T C2416T C3037T C14408T A23403G G25563T C27654T G29628T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_467950
 2020-03-08 2020-06-16
 United States hCoV-19/USA/CA-SR0415/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_467982
 2020-03-08 2020-06-16
 United States hCoV-19/USA/CA-SR0460/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_475548
 2020-03-08 2020-06-23
 Sweden hCoV-19/Sweden/20-08041/2020
 C14805T T17247C G26144T

EPI_ISL_475830
 2020-03-08 2020-06-25
 Austria hCoV-19/Austria/CeMM0390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479791
 2020-03-08 2020-07-01
 Italy hCoV-19/Italy/FVG-ICGEB_S26/2020
 C241T C3037T C14408T G15708A A23403G T26463C

EPI_ISL_479819
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479820
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T G16381A T17877C T28144C G28878A G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_479822
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479841
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G11083T C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479842
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A G28857T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479918
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- A2160G T4402C G5062T C8782T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479919
 2020-03-08 2020-07-01
 Japan hCoV-19/Japan/PG-0219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A2160G T4402C G5062T C8782T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_485001
 2020-03-08 2020-07-09
 South Korea hCoV-19/South Korea/A2/2020
 ATTAAAGGTTTA1- C2232Y G5572T C9924T G11083T C14805T C24381T G26144T G27754T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_488228
 2020-03-08 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G19518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488310
 2020-03-08 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489987
 2020-03-08 2020-07-14
 Peru hCoV-19/Peru/INS-009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_492985
 2020-03-08 2020-07-20
 Italy hCoV-19/Italy/NegrarVR_6/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T T3793C C14408T A16311G A23403G C23575T T29867A C29870A

EPI_ISL_495663 MT827203
 2020-03-08 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1488/2020
 ATTAAAGGTTT1- C8782T C9246T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_500399
 2020-03-08 2020-07-28
 Spain hCoV-19/Spain/COV005965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C8980T T9477A C14805T G25979T T28144C C28657T C28863T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_506956
 2020-03-08 2020-08-02
 South Korea hCoV-19/Korea/KCDC2162/2020
 ATTAAAGG1- C241T G5572T G11083T C14805T C21575T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_511891
 2020-03-08 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_0207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_516079 MT483878
 2020-03-08 2020-05-18
 Italy SARS-CoV-2/human/ITA/32898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T A3219G C14408T C20956Y A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516633
 2020-03-08 2020-08-21
 Germany hCoV-19/Berlin/ChVir-D658-5/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_516641
 2020-03-08 2020-08-21
 Germany hCoV-19/Berlin/ChVir-W1191-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C3037T C14408T A23403G ACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29761-

EPI_ISL_525586
 2020-03-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11679-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T A26161- TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525587
 2020-03-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11681-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525588
 2020-03-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11690-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525589
 2020-03-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11719-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T C8770Y C14408T A14480G A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525590
 2020-03-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-11789-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_527955
 2020-03-08 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42181327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AAAAAAAAA29895-

EPI_ISL_529034
 2020-03-08 2020-09-09
 United States hCoV-19/USA/NY-Wadsworth-11661-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T T20961C A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_530033
 2020-03-08 2020-09-10
 Spain hCoV-19/Spain/MD-LP104-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T A1788C C3037T C14408T C18131T A20268G A23403G G28027C G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_538267 MW010248
 2020-03-08 2020-09-16
 United States SARS-CoV-2/human/USA/MD-MDH-0183/2020
 C241T GTTATG515- C884T C3037T C14408T C18877T A23403G G25563T T29867A C29870G

EPI_ISL_539515
 2020-03-08 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201782/2020
 G11083T C18326T G26144T

EPI_ISL_539516
 2020-03-08 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201784/2020
 T7991C G11083T G26144T

EPI_ISL_539517
 2020-03-08 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201848/2020
 G11071C G11083T C13134G G19872T

EPI_ISL_547457
 2020-03-08 2020-09-24
 Netherlands hCoV-19/Netherlands/FR-RIVM-10083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T G28086T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547458
 2020-03-08 2020-09-24
 Netherlands hCoV-19/Netherlands/FR-RIVM-10084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T G28086T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547460
 2020-03-08 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T18513C A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566049
 2020-03-08 2020-10-01
 United Kingdom hCoV-19/England/201100832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G15438K A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT325572
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/GA_2118/2020
 T490A C3177T C8782T G14118A T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325576
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6394/2020
 C241T T3011C C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325589
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/NC_0024/2020
 C241T C2416T C3037T C14408T G14707K A23403G G25563T G26233T G28812K AAAAAAAAAAAAAAAAAAAAA29883-

MT325598
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/OH_0023/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325602
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/PA_2937/2020
 C241T C2416T C3037T C14408T T15393Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325608
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/SC_6370/2020
 T490A C3177T C6525Y C8782T C8956T C17074Y T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325611
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/VA_6352/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325612
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/VA_6377/2020
 C241T C3037T C14408T GG18505RK C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT325613
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/VA_6382/2020
 C8782T C17747T A17858G C18060T G18756K T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325614
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/VA_6389/2020
 C241T C3037T G11417T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325617
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6396/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325618
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6395/2020
 C241T T3011C C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325619
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6401/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325620
 2020-03-08 2020-04-10
 United States SARS-CoV-2/human/USA/IA_6399/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT509474
 2020-03-08 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810552
 2020-03-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0415-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810580
 2020-03-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0460-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_414544 LR878330
 2020-03-09 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G2198A C6255T C10456T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_414590 MT188339
 2020-03-09 2020-03-13
 United States USA/MN3-MDH3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1102T C8782T C17747T A17858G C18060T T21147C C21386T C22432T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415460 LR878335
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/Flevoland_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415462 LR878318
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/Gelderland_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415463 LR878331
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/Gelderland_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415466 LR878215
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415473 LR878350
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1594T C3037T C11109T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415474 LR878352
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1594T C3037T C11109T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415480 LR878092
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T G4255T C5284T C14408T T16456G C20051T A23403G C24117T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415482 LR878086
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G G25855T C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415483 LR878109
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C10741T C14408T A23403G C27046T C28344A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415496 LR878357
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415497 LR878216
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC G29290T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415498 LR878217
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415502 LR878339
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415508 LR878355
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- TCA12620- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415510 LR878354
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG518- G1018A ATG1605- C16762T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415511 LR878337
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415512 LR878320
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T1570C G11083T C14805T T17247C T21462C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415529 LR878333
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415530 LR878327
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415531 LR878323
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G1440A G2891A C7011T C23996T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415532 LR878328
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G T25187C G28300T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415533 LR878322
 2020-03-09 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415592 MT252787
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATA1- C8782T T16242C C17747T A17858G C18060T T28144C G29628T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_415595 MT252793
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW67/2020
 ATTAAA1- GGT7AAC T11A C8782T C17747T A17858G C18060T T28144C C29870A A29903G

EPI_ISL_415596 MT252788
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T23010C T28144C TG29867AA

EPI_ISL_415600 MT252789
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C5784T C8782T C9836T C17747T A17858G C18060T T28144C C28344T A29866V A29869T

EPI_ISL_415607 MT252803
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T150C T153G A3635G C8782T T15849C C17747T A17858G C18060T T28144C AAAAAAA29897-

EPI_ISL_415611 MT252806
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW46/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T27384C T28144C -29904ANANANANA

EPI_ISL_415612 MT252807
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HWTH C1419T C8782T G14126A C17747T A17858G C18060T T28144C -29904ANANANADA

EPI_ISL_415613 MT252808
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW48/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C -29904ANANAAVC

EPI_ISL_415614 MT252809
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCT1- C8782T C17747T A17858G C18060T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_415617 MT252815
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T28144C A29869H A29903-

EPI_ISL_415619 MT252813
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C8782T C17747T A17858G C18060T T28144C -29904ANANANANANA

EPI_ISL_415620 MT252814
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW55/2020
 ATTAAAGGTTTATACCTT1- G8083T C8782T C17747T A17858G C18060T T27384C T28144C -29904ANANANANA

EPI_ISL_415621 MT252812
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C12915T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_415622 MT252816
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T C21380T T28144C GA29868CT

EPI_ISL_415624 MT252818
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C6310T C8782T C17747T A17858G C18060T G27327T T28144C AA29902-

EPI_ISL_415625 MT252820
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29865C GA29868CT AA29902-

EPI_ISL_415627 MT252817
 2020-03-09 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW62/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C4754T G8602A C8782T C17747T A17858G C18060T G26152A T28144C

EPI_ISL_415630
 2020-03-09 2020-03-18
 United Kingdom hCoV-19/Scotland/CVR07/2020
 A2480G C2558T C2918T C5340T G11083T C14805T G26144T

EPI_ISL_415654
 2020-03-09 2020-03-18
 France hCoV-19/France/HF2174/2020
 C241T C2416T C3037T A12745G C14408T C20234T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416682 MT252760
 2020-03-09 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGC1- C8782T C17403T C17747T A17858G C18060T G22984A T27384C T28144C A29903-

EPI_ISL_416734
 2020-03-09 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFCFD/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_416739
 2020-03-09 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFD45/2020
 G431A C20270T A29683T

EPI_ISL_417311
 2020-03-09 2020-03-25
 United Kingdom hCoV-19/England/20110058706/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_417389
 2020-03-09 2020-03-25
 Australia hCoV-19/Australia/NSW26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T A9483G G11083T C18928T G24227A T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417520 MT374103
 2020-03-09 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-07/2020
 ATTAAAGGTTT1- C1059T G1397A G11083T C19547T C23934T T28648C T28688C G29742T AAAAAA29898-

EPI_ISL_417861
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/73/2020
 C241T C842T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417862
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/77/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417863
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/78/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417865
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/80/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417866
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/81/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417867
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/82/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC T29104C

EPI_ISL_417868
 2020-03-09 2020-03-27
 Iceland hCoV-19/Iceland/83/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417952
 2020-03-09 2020-03-27
 Spain hCoV-19/Spain/Madrid_H2_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G11083T G26144T CCAATGGAGATTGAT27370- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417969
 2020-03-09 2020-03-27
 Spain hCoV-19/Spain/Madrid_LP10_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A361G C3037T A9204G A20268G A21352G CA22006AC A23403G C26456T T27740C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417972
 2020-03-09 2020-03-27
 Spain hCoV-19/Spain/Madrid_LP12_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T T18099C A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417975
 2020-03-09 2020-03-27
 Spain hCoV-19/Spain/Madrid_LP14_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G11083T C14805T T17247C G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417978
 2020-03-09 2020-03-27
 Spain hCoV-19/Spain/Madrid_LP15_4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6286T C14408T A20268G A23403G C24422A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_418014
 2020-03-09 2020-03-28
 Portugal hCoV-19/Portugal/PT0029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25791T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418015
 2020-03-09 2020-03-28
 Portugal hCoV-19/Portugal/PT0030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25791T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418226
 2020-03-09 2020-03-29
 France hCoV-19/France/HF2381/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418339
 2020-03-09 2020-03-09
 Canada hCoV-19/Canada/ON_PHL3877/2020
 A1- C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418340
 2020-03-09 2020-03-09
 Canada hCoV-19/Canada/ON_PHL1083/2020
 A1- C6990T C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418353
 2020-03-09 2020-03-09
 Canada hCoV-19/Canada/ON_PHL0539/2020
 A1- C241T C2416T C3037T A5937C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418668
 2020-03-09 2020-03-30
 United Kingdom hCoV-19/England/20110136302/2020
 C241T C2416T C3037T C14408T G20578T A23403G G25563T

EPI_ISL_418819
 2020-03-09 2020-03-31
 Canada hCoV-19/Canada/BC_3808524/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418820
 2020-03-09 2020-03-31
 Canada hCoV-19/Canada/BC_3842755/2020
 C8782T C14724T C17747T A17858G C18060T T28144C

EPI_ISL_418823
 2020-03-09 2020-03-31
 Canada hCoV-19/Canada/BC_3989992/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418830
 2020-03-09 2020-03-31
 Canada hCoV-19/Canada/BC_4799711/2020
 C5170T C8782T C16468T T17673C A17858G C18060T T28144C

EPI_ISL_418982
 2020-03-09 2020-03-31
 Belgium hCoV-19/Belgium/HAA-030953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418983
 2020-03-09 2020-03-31
 Belgium hCoV-19/Belgium/DWAEE-030954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10741T C14408T A23403G C27046T C28344A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418984
 2020-03-09 2020-03-31
 Belgium hCoV-19/Belgium/BG-030955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T C21676T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418985
 2020-03-09 2020-03-31
 Belgium hCoV-19/Belgium/LT-030956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419261 MT322402
 2020-03-09 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0009/2020
 ATTAA1- C241T C3037T C14408T C18877T A23403G G25563T C29870A

EPI_ISL_419262 MT322403
 2020-03-09 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0010/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T G18756T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_419299 LC547521
 2020-03-09 2020-04-02
 Japan hCoV-19/Japan/P3-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C4321T C14408T C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_419676
 2020-03-09 2020-04-03
 Spain hCoV-19/Spain/Valencia12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419677
 2020-03-09 2020-04-03
 Spain hCoV-19/Spain/Valencia13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419678
 2020-03-09 2020-04-03
 Spain hCoV-19/Spain/Valencia14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G24928T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419740 MT450936
 2020-03-09 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC21/2020
 ATTA1- A2480G C2558T T6971C G6975T G6977A C9170T G11083T C14805T G26144T C26464T

EPI_ISL_419742 MT450937
 2020-03-09 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C6638T C14408T A20755C A23403G G25563T

EPI_ISL_419743 MT450938
 2020-03-09 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T T6971C G6975T G6977A C9170T G11083T C14805T G26144T

EPI_ISL_420107
 2020-03-09 2020-04-05
 Singapore hCoV-19/Singapore/30/2020
 ATTAAAGGTTTATACCTTCCCAG1- C8782T G18040T ACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCAT27848- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420112
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420113
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8782T T9477A C14805T C20582T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420114
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C8782T T9477A C14805T C21697T G25979T T28144C C28657T C28863T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_420115
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C1707T C8782T T9477A C14805T C20801T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420116
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420117
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420118
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420119
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_420120
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia35/2020
 ATTA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_420121
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia36/2020
 ATTAAAGGTT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420122
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420123
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420124
 2020-03-09 2020-04-05
 Spain hCoV-19/Spain/Valencia39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420145
 2020-03-09 2020-04-05
 Norway hCoV-19/Norway/1951/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_420150
 2020-03-09 2020-04-05
 Norway hCoV-19/Norway/2084/2020
 ATTAAAGGT1- C241T A761G C1059T C3037T A6825C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_420320
 2020-03-09 2020-04-06
 Belgium hCoV-19/Belgium/030959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8394T C12260G C14408T C15324T A23403G A28804G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420338
 2020-03-09 2020-04-06
 Belgium hCoV-19/Belgium/AC-030982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420346
 2020-03-09 2020-04-06
 Belgium hCoV-19/Belgium/SB-030990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A13947T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420445
 2020-03-09 2020-04-06
 Belgium hCoV-19/Belgium/FAE-030948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420452
 2020-03-09 2020-04-06
 Belgium hCoV-19/Belgium/RDC-030961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420890 LC534419
 2020-03-09 2020-03-19
 Japan SARS-CoV-2/Hu/Kng/19-437
 ATTAAAGGTTTA1- T13C C11752T G29140T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_421172
 2020-03-09 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_1502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6248C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_422642 LR877927
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422809 LR878150
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422821 LR878143
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422822 LR878139
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G A29419G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422823 LR878148
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422827 LR878153
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C14768T G29000T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422837 LR878157
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422862 LR878204
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14583T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422863 LR878199
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422870 LR877742
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422871 LR877743
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422872 LR877751
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422879 LR877761
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422880 LR877767
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23638T C28139A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422881 LR877764
 2020-03-09 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C22498T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424054
 2020-03-09 2020-04-12
 United Kingdom hCoV-19/England/20129059204/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_424848
 2020-03-09 2020-04-13
 United States hCoV-19/USA/AZ_8132/2020
 C8782T A16628G C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424849
 2020-03-09 2020-04-13
 United States hCoV-19/USA/AZ_8135/2020
 C8782T C17747T A17858G C18060T G18197R T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424866
 2020-03-09 2020-04-13
 United States hCoV-19/USA/IN_2001/2020
 C241T C3037T C14408T GG18505RK A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424868
 2020-03-09 2020-04-13
 United States hCoV-19/USA/LA_0842/2020
 C241T C1059T C3037T C10319T A14012T C14408T C17894T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424879
 2020-03-09 2020-04-13
 United States hCoV-19/USA/NV_0052/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T A27151R AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424885
 2020-03-09 2020-04-13
 United States hCoV-19/USA/PA_4395/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425799
 2020-03-09 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29540T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425801
 2020-03-09 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G C27524T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425809
 2020-03-09 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425845
 2020-03-09 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB039/2020
 C241T A23403G

EPI_ISL_426424 MT344952
 2020-03-09 2020-04-15
 United States SARS-CoV-2/human/USA/IN_92003/2020
 C203Y C241T C2416T C3037T A4364M C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426435 MT344960
 2020-03-09 2020-04-15
 United States SARS-CoV-2/human/USA/RI_0882/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_428674
 2020-03-09 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP11_2271/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T G11083T A23403G C26088T G26144T T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_428675
 2020-03-09 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP16_6193/2020
 ATTAAAGGTTTATACCTTCCCAG1- C8782T A23403G C26088T T28144C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_428680
 2020-03-09 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP24_5999/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G G29734C -29826T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_428699
 2020-03-09 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_36/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_429155
 2020-03-09 2020-04-23
 Sweden hCoV-19/Sweden/20-50230/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_429156
 2020-03-09 2020-04-23
 Sweden hCoV-19/Sweden/20-50232/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_429343
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI111/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429345
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI114/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29705T

EPI_ISL_429358
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI139/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429360
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI142/2020
 G1440A G2891A C7011T

EPI_ISL_429361
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI143/2020
 C241T C1059T C3037T C14408T C18377T A23403G G25563T

EPI_ISL_429364
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI146/2020
 C241T C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429368
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI150/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429369
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI151/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429370
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI154/2020
 C241T C1059T C3037T C14408T G17314A A23403G G25563T

EPI_ISL_429373
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI157/2020
 G1440A G2891A C7011T

EPI_ISL_429374
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI158/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429375
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI159/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_429376
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI160/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_429377
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI162/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429378
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI163/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429379
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI164/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429381
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI167/2020
 C241T C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429382
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI168/2020
 C241T C1059T C3037T C14408T C19263T A23403G G25563T

EPI_ISL_429383
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI169/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429384
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI171/2020
 C241T C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429385
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI172/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429386
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI173/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429387
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI174/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429395
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI194/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429396
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI195/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429399
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI201/2020
 C241T C3037T C14408T A23403G G27163T G28329T

EPI_ISL_429402
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI204/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29509T

EPI_ISL_429414
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI235/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429495
 2020-03-09 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI402/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429667
 2020-03-09 2020-04-24
 Brazil hCoV-19/Brazil/CV4/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C3037T C14408T C18877T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_429806
 2020-03-09 2020-04-24
 Canada hCoV-19/Canada/NB_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430134
 2020-03-09 2020-04-26
 United States hCoV-19/USA/WA-S280/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430720
 2020-03-09 2020-04-27
 Spain hCoV-19/Spain/Madrid-LP32/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A20268G A23403G G29734C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859G

EPI_ISL_430863
 2020-03-09 2020-04-28
 Sweden hCoV-19/Sweden/20-50231/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_434126 MT632990
 2020-03-09 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S366/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434455
 2020-03-09 2020-04-29
 Greece hCoV-19/Greece/133/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C6312G C14408T C18877T A23403G G25563T G29861T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864T

EPI_ISL_434484
 2020-03-09 2020-04-29
 Greece hCoV-19/Greece/148/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434744
 2020-03-09 2020-05-01
 United States hCoV-19/USA/TX-HMH035/2020
 C241T C1059T C3037T C14408T A23403G G23755T G25563T

EPI_ISL_434745
 2020-03-09 2020-05-01
 United States hCoV-19/USA/TX-HMH036/2020
 C241T C1059T C3037T C14408T A23403G G23755T G25563T

EPI_ISL_434753
 2020-03-09 2020-05-01
 United States hCoV-19/USA/TX-HMH044/2020
 C241T C1059T C3037T C14408T C21648T A23403G G25563T

EPI_ISL_435308
 2020-03-09 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_435310
 2020-03-09 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6027T C14408T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_435621
 2020-03-09 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC142/2020
 A25443C

EPI_ISL_436049 MT434787
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0097NYC/2020
 C1625T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436051 MT434788
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0162NYC/2020
 C241T C1059T C10851T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436052 MT434783
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0165NYC/2020
 C1625T A10155R G11083T C12992T A13265T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436053 MT434784
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0166NYC/2020
 C1625T G11083T A13265T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436054 MT434814
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0168NYC/2020
 C1625T G11083T A13265T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436055 MT434789
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0171NYC/2020
 C241T C2592A C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436056 MT434815
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0175NYC/2020
 C241T C1059T C14408T A23403G G25563T C27549T GCAAACTGT29440- T29726W AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436060 MT434793
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0302NYC/2020
 C241T C1059T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436062 MT434795
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0331NYC/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436063 MT434796
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0334NYC/2020
 C241T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436066 MT434798
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0440NYC/2020
 C241T C1059T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436067 MT434799
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0444NYC/2020
 C241T C1059T C14408T C21846T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436068 MT434800
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0472NYC/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436069 MT434801
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0475NYC/2020
 C241T C1059T C10851T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436076 MT434807
 2020-03-09 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0874NYC/2020
 C5730T C14805T T17247C G18985T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436963
 2020-03-09 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-197/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437913
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0023/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_437914
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0024/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_437915
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0025/2020
 C241T C1059T C3037T C14408T G21204T A23403G G25563T G29511T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437917
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0028/2020
 C241T C1059T C3037T C14408T G15380T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437918
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0029/2020
 C241T C1059T C3037T C3992Y G3994K A10037M C14408T T22521K A23403G C25509T G25563T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_437919
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0030/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T G29783T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437920
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0031/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437925
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0036/2020
 C241T C1059T C3037T C14408T G20419T T22521K A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437926
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0037/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437927
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0038/2020
 C241T C1059T C3037T C14408T G15380K A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437930
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0042/2020
 C241T C1059T C3037T C14408T A18760R T22521K A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437931
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0043/2020
 G1440A G2891R C7011T C9693T T22521K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438022
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0180/2020
 C241T C3037T G12832A G14335K C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_438023
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0181/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438024
 2020-03-09 2020-05-12
 Austria hCoV-19/Austria/CeMM0182/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442523
 2020-03-09 2020-05-12
 Iran hCoV-19/Iran/KHGRC-1.1-IPI-8206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G1397A G11083T C18377T G29374A G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_444833
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1261/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_444834
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1262/2020
 C241T C3037T C13499T C14408T A23403G C24096T C27046T GGG28881AAC

EPI_ISL_444835
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1263/2020
 C241T C1392T C3037T C14408T A20268G A23403G C24026T C27012T

EPI_ISL_444836
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1264/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444837
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1265/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444838
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1268/2020
 C241T C1059T C3037T C14408T C21699T A23403G G25563T

EPI_ISL_444839
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1269/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444840
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1270/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444893
 2020-03-09 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-762/2020
 C241T C1059T C3037T G9190T C14408T G15380T A23403G G25563T

EPI_ISL_445248
 2020-03-09 2020-05-15
 Chile hCoV-19/Chile/Santiago_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T G15286R A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445249
 2020-03-09 2020-05-15
 Chile hCoV-19/Chile/Santiago_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G11083T G26144T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445250
 2020-03-09 2020-05-15
 Chile hCoV-19/Chile/Santiago_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_445252
 2020-03-09 2020-05-15
 Chile hCoV-19/Chile/Santiago_9/2020
 AT1GGACTTACAAC AA5TC G8ATCTCTT C241T C3037T C14408T A20268G A23403G G29734C CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_447122
 2020-03-09 2020-05-16
 Belgium hCoV-19/Belgium/ULG-8937/2020
 C241T C3037T G4255T T14022A C14408T A23403G A26530G

EPI_ISL_447251
 2020-03-09 2020-05-17
 Israel hCoV-19/Israel/CVL-n3120/2020
 C241T C643T C3037T C3787T C11916T C14408T C15324T A20431R G20464C A23403G

EPI_ISL_447645 MT459901
 2020-03-09 2020-05-11
 Greece SARS-CoV-2/human/GRC/238_31927/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447651 MT459914
 2020-03-09 2020-05-11
 Greece SARS-CoV-2/human/GRC/259_31928/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450093
 2020-03-09 2020-05-20
 United States hCoV-19/USA/NY-PV09413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G101A C241T C1059T C3037T C5183T C14408T A23403G C23997T G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450123
 2020-03-09 2020-05-20
 United States hCoV-19/USA/NY-PV09449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450793 MT507271
 2020-03-09 2020-05-22
 Jamaica SARS-CoV-2/human/JAM/JM-CDC-0869/2020
 A2480G C2558T G11083T C14805T G26144T G28321A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451988
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-101/2020
 C241T G885T C3037T C5884T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_451991
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-106/2020
 C241T C3037T C14408T A23403G G29447T

EPI_ISL_451992
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-107/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451993
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-108/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451994
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-110/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_451995
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-111/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451996
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-112/2020
 C241T C1059T C1302T C3037T T10573C C11202T C11344T C14408T A23403G G25563T G26842A

EPI_ISL_451997
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-113/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451998
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-114/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451999
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-115/2020
 C241T C1059T C3037T C14408T G20709T A23403G G25563T

EPI_ISL_452000
 2020-03-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-116/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452109 MT512437
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/NM-CDC-3589/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452110 MT512438
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/FL-CDC-6318/2020
 C241T C313T C1616Y C3037T C14408T A23403G C25521Y GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452111 MT512439
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/FL-CDC-2718/2020
 T490A C3177T C8782Y T18736C G19684T C24034T T26729C C27635Y G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452129 MT512429
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/CO-CDC-5780/2020
 C8782Y C10818Y C14937T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452131 MT512431
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/IN-CDC-2013/2020
 T490A C3177T C8782Y T18736Y G19684T C24034T T26729C C27635Y G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452132 MT512415
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/FL-CDC-2316/2020
 C241T GTTATG515- C884T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452135 MT512418
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/IN-CDC-2005/2020
 C241T C2416T C3037T C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452136 MT512419
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/IN-CDC-2006/2020
 C241T C2416T C3037T C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452715
 2020-03-09 2020-05-27
 Spain hCoV-19/Spain/COV000812/2020
 T3022C C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452721
 2020-03-09 2020-05-27
 Spain hCoV-19/Spain/COV000793/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452722
 2020-03-09 2020-05-27
 Spain hCoV-19/Spain/COV000792/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452726
 2020-03-09 2020-05-27
 Spain hCoV-19/Spain/COV000779/2020
 G1148T C8782T T9477A T12175G C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454000
 2020-03-09 2020-05-28
 Portugal hCoV-19/Portugal/PT0285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454001
 2020-03-09 2020-05-28
 Portugal hCoV-19/Portugal/PT0286a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454003
 2020-03-09 2020-05-28
 Portugal hCoV-19/Portugal/PT0287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G5425T G11083T C14805T T17247C G26144T AGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29716-

EPI_ISL_454416 MT510999
 2020-03-09 2020-05-23
 Netherlands SARS-CoV-2/human/NLD/Leiden-0002/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G C23606Y

EPI_ISL_454439
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08044/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_454440
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08124/2020
 C241T G779A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454441
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08125/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454442
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08126/2020
 C241T C1059T C3037T C14408T G20419T A23403G G25563T

EPI_ISL_454479
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08108/2020
 C241T C3037T C6402T C14408T T23287C A23403G GGG28881AAC

EPI_ISL_454480
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08109/2020
 C241T C3037T C14408T C19488T A23403G GGG28881AAC

EPI_ISL_454481
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08110/2020
 C241T C6402T C14408T T23287C A23403G GGG28881AAC

EPI_ISL_454482
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08111/2020
 C241T C3037T C14408T A23403G C23683T GGG28881AAC

EPI_ISL_454483
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08112/2020
 C241T C3037T C14408T A23403G C23683T GGG28881AAC

EPI_ISL_454484
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08113/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454486
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08115/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454487
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08116/2020
 C241T C3037T C14408T A23403G

EPI_ISL_454488
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08118/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454489
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08119/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454490
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08120/2020
 C241T C3037T C4878T C14408T G18780T G22583A A23403G

EPI_ISL_454491
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08121/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454492
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08122/2020
 C241T C3037T C14408T G22583A A23403G

EPI_ISL_454493
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08123/2020
 C241T C2141T C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_454496
 2020-03-09 2020-05-28
 Sweden hCoV-19/Sweden/20-08054/2020
 C241T C3037T C14408T A23403G G27163T G28329T

EPI_ISL_454595
 2020-03-09 2020-05-28
 Croatia hCoV-19/Croatia/361_Pula/2020
 ATTAA1- C241T C3037T C3373M CCT5548MMY A5552W TT6619WW G6865T C14408T T20147C A23403G G25593C TGTTG28238YKC T28245G T28251CTG CA28253TC GGG28881AAC TTC29309GAA AGA29314CCC CAAGT29318YRMKW ATT29324WYW T29328K TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_454690 MW008579
 2020-03-09 2020-05-28
 United States SARS-CoV-2/human/USA/GA-EHC-083E/2020
 ATTAAA1- C241T C3037T C14408T A23403G G25563T GTTCTA28090- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_455328
 2020-03-09 2020-05-29
 Spain hCoV-19/Spain/Galicia201792/2020
 A1- A27C C8782T G8927A AG8938GA T9477A C14805T A21174G G25537T G25979T T28144C C28657T C28863T C29718T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455329
 2020-03-09 2020-05-29
 Spain hCoV-19/Spain/Galicia201793/2020
 A1- A27C A8527G T8671A C8782T T9477A C14805T G25537T G25979T T28144C C28657T C28863T C29718T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455330
 2020-03-09 2020-05-29
 Spain hCoV-19/Spain/Galicia201796/2020
 A1- C8782T T9477A C14805T A19705C T21368A G25537T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455714
 2020-03-09 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_301/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455715
 2020-03-09 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_302/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T GT5513A C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_455847
 2020-03-09 2020-06-01
 Sweden hCoV-19/Sweden/20-08117/2020
 C241T C3037T C14408T A23403G

EPI_ISL_455902
 2020-03-09 2020-06-01
 Sweden hCoV-19/Sweden/20-08127/2020
 G1440A T1778C G2891A C7011T C7299T T24514C G25593C

EPI_ISL_455905
 2020-03-09 2020-06-01
 Sweden hCoV-19/Sweden/20-50272/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_455909
 2020-03-09 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C

EPI_ISL_460311 MT520386
 2020-03-09 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T C5284T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_461003
 2020-03-09 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4655T G8422A G19648T C22323T C29546A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461104
 2020-03-09 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461105
 2020-03-09 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461106
 2020-03-09 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462328
 2020-03-09 2020-06-08
 Singapore hCoV-19/Singapore/210/2020
 AAAAAAAAAAAA29892-

EPI_ISL_464755
 2020-03-09 2020-06-11
 United Kingdom hCoV-19/England/201141471/2020
 C241T C3037T C14408T G20213R A23403G

EPI_ISL_464767
 2020-03-09 2020-06-11
 United Kingdom hCoV-19/England/201141596/2020
 T514C ATG1605- C22591T

EPI_ISL_464806
 2020-03-09 2020-06-11
 United Kingdom hCoV-19/England/201160910/2020
 C241T C3037T C6968T C14408T A23403G GGG28881AAC

EPI_ISL_464807
 2020-03-09 2020-06-11
 United Kingdom hCoV-19/England/201160912/2020
 G11083T C14805T T17247C C22444T G25784C G26144T

EPI_ISL_464808
 2020-03-09 2020-06-11
 United Kingdom hCoV-19/England/201160953/2020
 G1440A G2891R A27669G

EPI_ISL_466943 LR824058
 2020-03-09 2020-06-12
 Switzerland 100019
 C241T C3037T C14408T A19298W A19356W T19516Y C19522Y A22453R A23403G GGG28881AAC

EPI_ISL_466950 LR824047
 2020-03-09 2020-06-12
 Switzerland 100026
 C241Y C3037Y G11083K C12400Y C14408Y C14805Y T17247Y G22454R C22506S A23403R G26144K

EPI_ISL_469074
 2020-03-09 2020-06-17
 Sweden hCoV-19/Sweden/20-08134/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_469143
 2020-03-09 2020-06-17
 Singapore hCoV-19/Singapore/394/2020
 AAAAAAAAAAAA29892-

EPI_ISL_470882
 2020-03-09 2020-06-19
 Norway hCoV-19/Norway/1949/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_471528
 2020-03-09 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_1751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475550
 2020-03-09 2020-06-23
 Sweden hCoV-19/Sweden/20-08056/2020
 G1397A A7970G G14653A C18788T T28688C G29742T

EPI_ISL_475558
 2020-03-09 2020-06-23
 Sweden hCoV-19/Sweden/20-50204/2020
 C14805T T17247C G26144T

EPI_ISL_475559
 2020-03-09 2020-06-23
 Sweden hCoV-19/Sweden/20-50210/2020
 C884T G1397A TTG3333- C4455T C6070T C8480T G8653T G11083- T28688C G29742T

EPI_ISL_475837
 2020-03-09 2020-06-25
 Austria hCoV-19/Austria/CeMM0402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2000C C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475844
 2020-03-09 2020-06-25
 Austria hCoV-19/Austria/CeMM0414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479843
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479844
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C5093T C11752T C19170A TTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29822-

EPI_ISL_479845
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479846
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A ATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29819-

EPI_ISL_479920
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C140T A2160G T4402C G5062T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479921
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A2160G T4402C G5062T C8782T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479928
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T C15324T A23403G AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_479929
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T C15324T A23403G AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_479930
 2020-03-09 2020-07-01
 Japan hCoV-19/Japan/PG-0235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T C15324T A23403G TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_482451
 2020-03-09 2020-07-03
 United States hCoV-19/USA/OR-PROV-216/2020
 A4236G G11083T C14805T T25655C G26144T

EPI_ISL_482988
 2020-03-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17010T C17747T A17858G C18060T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_486646
 2020-03-09 2020-07-10
 Italy hCoV-19/Italy/HSacco-2/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_488349
 2020-03-09 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488748
 2020-03-09 2020-07-14
 United Kingdom hCoV-19/England/NORT-28125A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29081R G29540T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488756
 2020-03-09 2020-07-14
 United Kingdom hCoV-19/England/NORT-2812A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488807
 2020-03-09 2020-07-14
 United Kingdom hCoV-19/England/NORT-28124B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29540T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489839
 2020-03-09 2020-07-14
 Peru hCoV-19/Peru/Peru008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T A20268G A23403G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_489989
 2020-03-09 2020-07-14
 Peru hCoV-19/Peru/INS-012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T A16216G A20268G A23403G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_497769
 2020-03-09 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1595A A3790G A8121G C9962T G11083T C11704T T13929C C14724T T21584G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498004
 2020-03-09 2020-07-26
 South Korea hCoV-19/Korea/KCDC2103/2020
 T4402C G5062T C8782T G17814T T28144C

EPI_ISL_498005
 2020-03-09 2020-07-26
 South Korea hCoV-19/Korea/KCDC2104/2020
 ATTAAAG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_500042
 2020-03-09 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A47AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1514T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_500048
 2020-03-09 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T A9634W G11083T C14805T G26144T C29870A

EPI_ISL_500402
 2020-03-09 2020-07-28
 Spain hCoV-19/Spain/COV005968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C583T C8782T T9477A C14805T G25979T C26527T T28144C C28603Y C28657T C28863T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500626
 2020-03-09 2020-07-29
 Australia hCoV-19/Australia/NSW2137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500632
 2020-03-09 2020-07-29
 Australia hCoV-19/Australia/NSW2154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500633
 2020-03-09 2020-07-29
 Australia hCoV-19/Australia/NSW2155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T G11083T C18928T T28688C G29374A G29742T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_506957
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2163/2020
 ATTAAAG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_506958
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2164/2020
 ATTAAAG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_506959
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2165/2020
 ATTAAAGGTTT1- T4402C G5062T C7528T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_506960
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2166/2020
 ATTAAAG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_506961
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2167/2020
 ATTAAAGG1- G124A T4402C G5062T T8168A C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_506962
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2168/2020
 ATTAAAG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_506963
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2169/2020
 ATTAAAGGTTT1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_506964
 2020-03-09 2020-08-02
 South Korea hCoV-19/Korea/KCDC2170/2020
 ATTAAAGG1- T4402C G5062T C8782T G17814T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_507010 MT820461
 2020-03-09 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC01/2020
 ATTAAAGGTTTATACC1- C6312A G11083T C13730T C23929T A25615G C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508937
 2020-03-09 2020-08-04
 France hCoV-19/France/ARA06923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T A11935C C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508938
 2020-03-09 2020-08-04
 France hCoV-19/France/ARA07055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508939
 2020-03-09 2020-08-04
 France hCoV-19/France/ARA07148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTG1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508940
 2020-03-09 2020-08-04
 France hCoV-19/France/ARA07169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T G16852T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_510166
 2020-03-09 2020-08-06
 Spain hCoV-19/Spain/Madrid/COV005280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241Y C3037Y C8782Y C13115Y C13356Y C13665Y C14408Y A20268R A23403R T25541Y C26088Y T28144Y CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510817
 2020-03-09 2020-08-07
 Sweden hCoV-19/Sweden/20-50310/2020
 C241T C3037T C14408T C20031A C20320T A23403G T25674C C27046T GGG28881AAC

EPI_ISL_512653
 2020-03-09 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C6696T C10702T C14408T A20268G A23403G C26461T -29812A GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_516080 MT483876
 2020-03-09 2020-05-18
 Italy SARS-CoV-2/human/ITA/34104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T G4255T T6640C C14408T A23403G A26057G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516081 MT483877
 2020-03-09 2020-05-18
 Italy SARS-CoV-2/human/ITA/34117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C12115T C14408T A23403G A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_522349
 2020-03-09 2020-08-25
 Belgium hCoV-19/Belgium/rega-0309752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T T11654C C14408T G17427T A23403G G23873A T28144C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523932
 2020-03-09 2020-08-27
 Germany hCoV-19/Germany/NW-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525591
 2020-03-09 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12211-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T595A C1059T C3037T C12534T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525611
 2020-03-09 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-14419-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C7869T C8782T C11941T T18736C C24034T T26729C G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525612
 2020-03-09 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-14422-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T G28376T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_527956
 2020-03-09 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42181461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C17285T A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_534790
 2020-03-09 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2A78/2020
 G11083T C14805T G26031T G26144T G28842T AAAAAAAAAA29894-

EPI_ISL_538268 MW010249
 2020-03-09 2020-09-16
 United States SARS-CoV-2/human/USA/MD-MDH-0184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C18877T A23403G G25563T T29867A C29870A

EPI_ISL_539114
 2020-03-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8CC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18606T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539208
 2020-03-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438R C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539518
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201849/2020
 G11083T G26144T C29801A

EPI_ISL_539519
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/AR-ISCIII-201850/2020
 A8686T G11083T G26144T

EPI_ISL_539555
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-209818/2020
 C241T C3037T C11514T A12765G C14408T A20268G A23403G T25779A C27247T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_539561
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201899/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_539563
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/GA-ISCIII-201794/2020
 A6T GGCTATTGATGGTGGTGTCACTCGTGACATAGCATCTACAGATAC8695- CCAGCGTGGTGGTAGTTATACTAATGACAAAGCTTGCCCATTGATTGCTGCAGTCATAACAAGAGAAGTGGGTTTTGTCGTGCCTGGTTTGCCTGGCACGATATTACGCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCAGTTGGTAACATCTGT8782- T9477A C14805T G25537T G25979T T28144C C28657T C28863T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_539569
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/NA-ISCIII-201944/2020
 A3778G T9477A C14805T T28144C C28657T C28863T A29004T

EPI_ISL_539570
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/NA-ISCIII-201945/2020
 C8782T T9477A C14805T C17304T G25979T T28144C C28657T C28863T

EPI_ISL_539571
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/NA-ISCIII-201951/2020
 ATTAAAGG1- C8782T T9477A C14805T C21077T G25979T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539572
 2020-03-09 2020-09-18
 Spain hCoV-19/Spain/NA-ISCIII-201952/2020
 A8256G C8281T C8320A T9477A A10988G C14805T C21575T T25705A G25979T T28144C C28657T C28863T

EPI_ISL_547514
 2020-03-09 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C280T T514C C583T T1606C C18647T G21776T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547527
 2020-03-09 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C G4255T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547528
 2020-03-09 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548367
 2020-03-09 2020-09-26
 United States hCoV-19/USA/CA-CZB-3635/2020
 ATTAAAG1- G8S T10W C241T C3037T C14408T C15720Y C18877T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MT292569
 2020-03-09 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT292571
 2020-03-09 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT292573
 2020-03-09 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G24928T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT320891
 2020-03-09 2020-04-10
 Iran SARS-CoV-2/human/IRN/HGRC-1.1-IPI-8206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G1397A G11083T C18377T G29374A G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT325561
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/AZ_8132/2020
 C8782T A16628G C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325562
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/AZ_8135/2020
 C8782T C17747T A17858G C18060T G18197R T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT325579
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/IN_2001/2020
 C241T C3037T C14408T GG18505RK A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT325581
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/LA_0842/2020
 C241T C1059T C3037T C10319T A14012T C14408T C17894T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

MT325597
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/NV_0052/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T A27151R AAAAAAAAAAAAAAAAAAAAA29883-

MT325603
 2020-03-09 2020-04-10
 United States SARS-CoV-2/human/USA/PA_4395/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT459849
 2020-03-09 2020-05-11
 Greece SARS-CoV-2/human/GRC/133_31929/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C6312G C14408T C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459863
 2020-03-09 2020-05-11
 Greece SARS-CoV-2/human/GRC/148_31943/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT956917
 2020-03-09 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-79876568/2020
 C241T C3037T C14408T A23403G

EPI_ISL_415461
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/Gelderland_1-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C8782T G16381A T28144C G28878A G29742A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415465 LR878344
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415467 LR878218
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C10741T C14408T A23403G C27046T C28344A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415468 LR878083
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415469 LR878080
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415476 LR878351
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C18029T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415492 LR878097
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T1570C G11083T C14408T C14805T T17247C T21462C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415495 LR878345
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G1440A G2891A G16075T G29383T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415500 LR878347
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C17410T G27754T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415526 LR878334
 2020-03-10 2020-03-17
 Netherlands hCoV-19/Netherlands/Utrecht_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C8782T G16381A T28144C G28878A G29742A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415591 MT252791
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW63/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_415594 MT252796
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- T5860C C8782T C17747T A17858G C18060T T18099A T28144C

EPI_ISL_415597 MT252794
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW69/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_415598 MT252798
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_415601 MT252792
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T T3011C C3037T C14408T A23403G

EPI_ISL_415602 MT252795
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW74/2020
 ATTAAAGGTTTATA1- CCCAGG19- CAAACCAACCAA28T C832T C8782T C17747T A17858G C18060T T28144C GAA29864TCT GA29868CT A29903-

EPI_ISL_415603 MT252797
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW75/2020
 ATTAAAG1- AACC34HWYH C8782T C17747T A17858G C18060T A24877G T28144C -29904ANANANA

EPI_ISL_415604 MT252800
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C8782T C17747T A17858G C18060T C23758T T28144C -29904ANAAANA

EPI_ISL_415626 MT252819
 2020-03-10 2020-03-18
 United States SARS-CoV-2/human/USA/WA-UW61/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T GTT669- C8782T G17158A C17747T A17858G C18060T T28144C -29904AAAAA

EPI_ISL_415631
 2020-03-10 2020-03-18
 United Kingdom hCoV-19/Scotland/CVR10/2020
 A1515G G11083T C14805T T17247C A21625G G26144T

EPI_ISL_415642
 2020-03-10 2020-03-18
 Georgia hCoV-19/Georgia/Tb-477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T C14408T A23403G ATGA29866GCTG AA29871CT A29874T AAA29876TGG AAAAAAAAAAAAAAAAAAAAAAA29881G

EPI_ISL_415643
 2020-03-10 2020-03-18
 Georgia hCoV-19/Georgia/Tb-468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- A915G C10319T G11083T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_415787 MT263074
 2020-03-10 2020-03-30
 Peru SARS-CoV-2/human/PER/Peru-10/2020
 ATTAAAGGT1- C241T C3037T A8945G C14408T A23403G T24022C GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_416433 MT252677
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW77/2020
 ATTAAAGGTTTATACCTT1- AACC34HTTH C8782T C17747T A17858G C18060T T28144C -29904ANANANANA

EPI_ISL_416434 MT252678
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T T16419C A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416435 MT252679
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW79/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C1929T C5784T C8782T C17747T A17858G C18060T G26730A T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416436 MT252680
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- G2782T T5860C C8782T C17747T A17858G C18060T G26063T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416437 MT252681
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- C4084T C8782T C17747T A17858G C18060T T28144C A29869G AAAAAAA29897-

EPI_ISL_416438 MT252682
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW82/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAA29892-

EPI_ISL_416439
 2020-03-10 2020-03-21
 United States hCoV-19/USA/WA-UW83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C832T C8782T A13901G C17747T A17858G C18060T C27945T T28144C A29869T -29904ANANANANAAA

EPI_ISL_416440 MT252683
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- T150C T153G C8782T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416441 MT252684
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C8782T C17747T A17858G C18060T A18121G C27741T T28144C T29410C AAAAAAAA29896-

EPI_ISL_416442 MT252685
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAAC1- C8782T C17747T A17858G C18060T T28144C AAAAAA29898-

EPI_ISL_416443 MT252686
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- A6693G C8782T C17747T A17858G C18060T T28144C A29869H

EPI_ISL_416444 MT252687
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G354A C4755T C8782T C17747T A17858G C18060T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_416445 MT252688
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW89/2020
 A55C C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416446 MT252689
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- ATG518- C8782T C17747T A17858G C18060T T28144C AAAAAA29898-

EPI_ISL_416447 MT252690
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T C17747T A17858G C18060T C21646T G22988A T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416451 MT252694
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T C17747T A17858G C18060T T28144C C29733T A29876C AAAAAAAA29896-

EPI_ISL_416452 MT252695
 2020-03-10 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T C27005T G29553A AAAAAAAAAA29894-

EPI_ISL_416495
 2020-03-10 2020-03-22
 France hCoV-19/France/HF2234/2020
 C241T C1059T C3037T C14408T A18682G A23403G G25563T C29739T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_416496
 2020-03-10 2020-03-22
 France hCoV-19/France/HF2237/2020
 C241T C1059T C3037T C14408T A23403G G25563T A26459G G27490T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_416497
 2020-03-10 2020-03-22
 France hCoV-19/France/HF2239/2020
 A4T C241T C2416T C3037T T12722C C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416521
 2020-03-10 2020-03-22
 Saudi Arabia hCoV-19/SaudiArabia/SCDC-3321/2020
 TTA2C TT9CCAAACTGTCAC C241T C3037T C14408T C18877T A23403G G25563T C26735T AAAAAAAAAAAA29892-

EPI_ISL_416522
 2020-03-10 2020-03-22
 Saudi Arabia hCoV-19/SaudiArabia/SCDC-3324/2020
 TTA2C TT9CCAAACTGTCAC C241T C3037T C14408T C18877T A23403G G25563T C26735T AAAAAAAAAAAA29892-

EPI_ISL_416650 MT252776
 2020-03-10 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C556T C6310T C8782T C17747T A17858G C18060T G27327T T28144C G28300T -29904ANANANANANANA

EPI_ISL_416660 MT252786
 2020-03-10 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416672
 2020-03-10 2020-03-23
 United States hCoV-19/USA/WA-UW134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T -19713TTACACAAAAGTTGATGGTGTTGATGTAGAATTGTTTGAAAATAAAACAACATTACCTGTTAATGTAGCATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416745
 2020-03-10 2020-03-23
 France hCoV-19/France/Pollionay_1733/2020
 C241T C3037T C14408T C15324T A15860G G19872T A23403G C25416T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417191 MT911534
 2020-03-10 2020-03-24
 United States SARS-CoV-2/human/USA/MN5-MDH5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T20833C A23403G GGG28881AAC AT29697GA A29700G AGA29714GAG -29744GA -29776A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417392
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T -11075TTT G11083T C18928T T28688C G29374A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417394
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1820A A2480G C2558T T8599C G11083T C14805T G26144T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417395
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417396
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C6312A G11083T C13730T C23929T A25615G C28311T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417399
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2558T G11083T C14805T G26144T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417400
 2020-03-10 2020-03-25
 Australia hCoV-19/Australia/NSW44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C6312A G11083T C13730T C23929T C28311T C29614T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417457 MT582488
 2020-03-10 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-12/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417521 MT374104
 2020-03-10 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-08/2020
 C1059T G1397A G11083T C23934T T28648C T28688C G29742T

EPI_ISL_417682
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/101/2020
 C241T C1059T C1302T C2939T C3037T T11191G C14408T A23403G G25563T

EPI_ISL_417698
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/103/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_417730
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/93/2020
 C241T C3037T C14408T A23403G

EPI_ISL_417732
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/94/2020
 A1515G C9223T G11083T C14805T T17247C A17799G G26144T G29321T

EPI_ISL_417761
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/84/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417777
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/102/2020
 C241T C799T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_417872
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/90/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417873
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/91/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27532T

EPI_ISL_417876
 2020-03-10 2020-03-27
 Iceland hCoV-19/Iceland/97/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417958 MT334529
 2020-03-10 2020-03-27
 United States SARS-CoV-2/human/USA/UT-00010/2020
 G1440A G2891A C7011T G29868V

EPI_ISL_418000
 2020-03-10 2020-03-28
 Portugal hCoV-19/Portugal/PT0015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- ATG1605- G5332T C20270T C20703T A29683T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418001
 2020-03-10 2020-03-28
 Portugal hCoV-19/Portugal/PT0016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3373A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418003
 2020-03-10 2020-03-28
 Portugal hCoV-19/Portugal/PT0018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418016
 2020-03-10 2020-03-28
 Portugal hCoV-19/Portugal/PT0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25791T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418210
 2020-03-10 2020-03-29
 Senegal hCoV-19/Senegal/073/2020
 C241T C3037T C14408T A23403G G27261T

EPI_ISL_418333
 2020-03-10 2020-03-10
 Canada hCoV-19/Canada/ON_PHL3501/2020
 A1- T8767C C8782T T10771C C17733T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418362
 2020-03-10 2020-03-10
 Canada hCoV-19/Canada/ON_PHL3536/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418365
 2020-03-10 2020-03-10
 Canada hCoV-19/Canada/ON_PHL0977/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418369
 2020-03-10 2020-03-10
 Canada hCoV-19/Canada/ON_PHL8539/2020
 A1- C241T C3037T C3373A C9733T C14408T A23403G GGG28881AAC A29877G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418582
 2020-03-10 2020-03-30
 Ireland hCoV-19/Ireland/22901/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_418583
 2020-03-10 2020-03-30
 Ireland hCoV-19/Ireland/24042/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_418584
 2020-03-10 2020-03-30
 Ireland hCoV-19/Ireland/24052/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_418676
 2020-03-10 2020-03-30
 United Kingdom hCoV-19/England/20122074602/2020
 G11083T C14805T G26144T C26533Y

EPI_ISL_418793
 2020-03-10 2020-03-31
 Belgium hCoV-19/Belgium/SS-031047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23393T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418800
 2020-03-10 2020-03-31
 Belgium hCoV-19/Belgium/CS-031052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A C2469T G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418821
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_3968175/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418822
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_3972884/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418825
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_4118226/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418826
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_4122951/2020
 C8782T A17858G C18060T T28144C G29736T

EPI_ISL_418829
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_4540462/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418836
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_6004567/2020
 C241T C3037T C12138T C14408T C18877T A23403G G25563T

EPI_ISL_418837
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_6129127/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_418839
 2020-03-10 2020-03-31
 Canada hCoV-19/Canada/BC_6489864/2020
 A187G C241T C3037T C14408T A23403G G29810T

EPI_ISL_419263 MT322404
 2020-03-10 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T T28144C C29870A

EPI_ISL_419297 LC547519
 2020-03-10 2020-04-02
 Japan hCoV-19/Japan/P2-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C14408T C18877T A23403G G25563T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_419298 LC547520
 2020-03-10 2020-04-02
 Japan hCoV-19/Japan/P2-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419659
 2020-03-10 2020-04-03
 Austria hCoV-19/Austria/CeMM0006/2020
 C241T C3037T C14408T A20268G A23403G C27092T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419661
 2020-03-10 2020-04-03
 Austria hCoV-19/Austria/CeMM0008/2020
 C241T C3037T C14408T A20268G G22349K A23403G C26958Y G29734C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419665
 2020-03-10 2020-04-03
 Austria hCoV-19/Austria/CeMM0012/2020
 C241T C1059T C3037T G10981K C14408T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_419680
 2020-03-10 2020-04-03
 Spain hCoV-19/Spain/Valencia16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419681
 2020-03-10 2020-04-03
 Spain hCoV-19/Spain/Valencia17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419706 MT322405
 2020-03-10 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0012/2020
 AT1-C C241T C2416T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_419712 MT322410
 2020-03-10 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0020/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_419744 MT450940
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC25/2020
 ATTAAAGGTTTATAC1- A1515G C9223T G11083T C14805T T17247C G21795A G26144T

EPI_ISL_419745 MT450941
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC26/2020
 AT1- G1440A G2891A C7011T

EPI_ISL_419746 MT450942
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC27/2020
 ATTA1- T490A T998G C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419747 MT450943
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC28/2020
 ATTAAAGGTTTA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419748 MT450944
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC29/2020
 A1- C241T C3037T T11638C C14408T A23403G T23797Y C28232Y GGG28881AAC C29708T

EPI_ISL_419749 MT450945
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C1076T G1397A G11083T G19788T T28688C G29742T

EPI_ISL_419750 MT450946
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419751 MT450947
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419752 MT450948
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419753 MT450949
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC34/2020
 ATTAAAGG1- A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C G29742T

EPI_ISL_419755 MT450950
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419765 MT450951
 2020-03-10 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC36/2020
 ATTAAAGGTTTATACCTT1- G7128A G11083T C14805T T17247C G26144T

EPI_ISL_420108
 2020-03-10 2020-04-05
 Singapore hCoV-19/Singapore/31/2020
 ATTAAAGGTTTA1- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420141
 2020-03-10 2020-04-05
 Norway hCoV-19/Norway/1867/2020
 ATTAAA1- C241T C3037T C5547T C5730T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_420143
 2020-03-10 2020-04-05
 Norway hCoV-19/Norway/1917/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_420147
 2020-03-10 2020-04-05
 Norway hCoV-19/Norway/1989/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_420313
 2020-03-10 2020-04-06
 Norway hCoV-19/Norway/1953/2020
 ATTAAAGGTTT1- C241T C3037T T3725G C14408T A23403G A26530G

EPI_ISL_421662
 2020-03-10 2020-04-09
 India hCoV-19/India/1073/2020
 ATTAAAGGTTTATAC1- C884T G1397A A3472G G8653T T9318A T9320A T9357A G11083T G27613T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_421663
 2020-03-10 2020-04-09
 India hCoV-19/India/1093/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C884T G1397A C2141A A3472G G8653T G11083T T25612G G25641C G27613T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_421664
 2020-03-10 2020-04-09
 India hCoV-19/India/1100/2020
 ATTAAAGGTTT1- C884T G1397A A3472G G8653T G11083T A16061G G27613T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_421665
 2020-03-10 2020-04-09
 India hCoV-19/India/1104/2020
 ATTAAAGGTTTAT1- C884T G1397A C2638T G8653T C9226T G11083T C13548T C17573T A25980C T28688C G29742T A29879G A29883T A29901T

EPI_ISL_421666
 2020-03-10 2020-04-09
 India hCoV-19/India/1111/2020
 ATTAAAGGTTTA1- C1267T G1397A A9514G G11083T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_421667
 2020-03-10 2020-04-09
 India hCoV-19/India/1115/2020
 ATTAAAG1- C884T G1397A A3472G G8653T G11083T G27613T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_421668
 2020-03-10 2020-04-09
 India hCoV-19/India/1125/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C583T G1397A TACTAT6853- C7011T C11074T G11083T C25904T C27213T C27999T T28688C G29742T A29891G

EPI_ISL_422641 LR878122
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422661 LR878195
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C10186T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422662 LR878201
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422834 LR878165
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422835 LR878155
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422839 LR878162
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C878A G11083T C14805T T17247C G26144T C26353T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422894 LR878117
 2020-03-10 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordHolland_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424352 GWHACEY01000001 MT281577
 2020-03-10 2020-04-04
 China SARS-CoV-2/Fuyang_FY002/human/2020/CHN
 T721C G1895T G11083T C21711T G26144T A29695G

EPI_ISL_424352 GWHACEY01000001 MT281577
 2020-03-10 2020-04-04
 China SARS-CoV-2/Fuyang_FY002/human/2020/CHN
 T721C G1895T G11083T C21711T G26144T A29695G

EPI_ISL_424361
 2020-03-10 2020-04-13
 India hCoV-19/India/1063/2020
 AT1- G7C C884T G1397A G8653T G11083T G27613T T28688C C29296T G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424362
 2020-03-10 2020-04-13
 India hCoV-19/India/1135/2020
 ATTAAAGGTTTATAC1- C241T C3037T C4809T C14408T C22855A C22858A T22861A T22863A A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_424670
 2020-03-10 2020-04-13
 Mexico hCoV-19/Mexico/Queretaro-InDRE_04/2020
 C8782T C26088T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_424864
 2020-03-10 2020-04-13
 United States hCoV-19/USA/GA_2343/2020
 T490A C3177T C8782T T18736C C21588T C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425179
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425180
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425181
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425182
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21697T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425183
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21697T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425184
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425185
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425186
 2020-03-10 2020-04-14
 Spain hCoV-19/Spain/Valencia62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425663
 2020-03-10 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425800
 2020-03-10 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6653R C14408T C23086T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426293
 2020-03-10 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-12883-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426362
 2020-03-10 2020-04-16
 Mexico hCoV-19/Mexico/CDMX-INCMNSZ_02/2020
 C8782T T9477A C14805T C23280T G25979T T28144C C28657T C28863T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427305
 2020-03-10 2020-04-18
 Brazil hCoV-19/Brazil/SC-766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C6312A G11083T C12403T C13730T C23929T C28311T AG29782CT G29786C TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_427306
 2020-03-10 2020-04-18
 Brazil hCoV-19/Brazil/SC-769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AG29782CT G29786C TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_428671 MT371048
 2020-03-10 2020-04-21
 Sri Lanka SARS-CoV-2/human/LKA/COV53/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429157
 2020-03-10 2020-04-23
 Sweden hCoV-19/Sweden/20-50234/2020
 C241T C3037T C14408T A23403G G25273T GGG28881AAC

EPI_ISL_429158
 2020-03-10 2020-04-23
 Sweden hCoV-19/Sweden/20-50235/2020
 C241T C3037T A12790G C13568T G14209A C14408T A23403G

EPI_ISL_429262
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH01/2020
 C241T A761G C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429263
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH02/2020
 C241T C583T C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429264
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH03/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429265
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH04/2020
 C241T C1059T C3037T C8476T G13749T C14408T A23403G G25563T

EPI_ISL_429266
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH05/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429267
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH06/2020
 C241T C1059T C3037T G13749T C14408T A23403G G25563T

EPI_ISL_429268
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH07/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429269
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH08/2020
 C241T C1059T C3037T G12070T C14408T A23403G G24199T G25563T

EPI_ISL_429270
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH11/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429271
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH13/2020
 C241T C1059T C3037T C12885T C14408T A23403G G25563T

EPI_ISL_429272
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH14/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429273
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH15/2020
 C106T C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_429274
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH16/2020
 C241T C1059T C3037T C14408T C19263T A23403G G25563T

EPI_ISL_429275
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH17/2020
 C241T C1059T C3037T C14408T C19263T A23403G G25563T

EPI_ISL_429276
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH18/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429277
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH19/2020
 C241T C1059T C3037T A6133G C14408T G20419T A23403G G25563T

EPI_ISL_429278
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH20/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_429279
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH21/2020
 G1440A G2891A C7011T

EPI_ISL_429280
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH22/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429281
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH23/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429371
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI155/2020
 C241T C1059T C3037T C14408T A23403G G25563T A29389G

EPI_ISL_429372
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI156/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429404
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI207/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429405
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI209/2020
 C241T C3037T C14408T A23403G G27163T G28329T

EPI_ISL_429408
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI216/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429409
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI219/2020
 C241T C1059T C3037T A23403G G25563T

EPI_ISL_429410
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI221/2020
 C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC

EPI_ISL_429420
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI258/2020
 G1440A G2891A C7011T

EPI_ISL_429421
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI259/2020
 G1440A G2891A C7011T

EPI_ISL_429424
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI262/2020
 C241T T658C C3037T C14408T G21604T A23403G A24862G G26209C C28629T

EPI_ISL_429425
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI263/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429426
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI264/2020
 G1440A G2891A C7011T

EPI_ISL_429427
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI265/2020
 G1440A G2891A C7011T

EPI_ISL_429428
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI268/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429431
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI271/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_429433
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI272/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429434
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI273/2020
 C241T T658C C3037T C14408T A23403G A24862G G26209C C28629T

EPI_ISL_429439
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI279/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429440
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI280/2020
 C241T C1059T C3037T C14408T A23403G T25414C G25563T

EPI_ISL_429448
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI293/2020
 G1440A G2891A C7011T C11962T

EPI_ISL_429449
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI298/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429450
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI299/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429451
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI300/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429452
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI301/2020
 C241T C1059T C3037T C7162T C14408T T18300C A23403G G25563T

EPI_ISL_429453
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI302/2020
 C241T C1059T C3037T C14408T A23403G G25563T A29389G

EPI_ISL_429501
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI407/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429502
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI408/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429503
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI409/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429505
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI411/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429507
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI412/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429509
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI413/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429511
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI414/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429513
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI416/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429514
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI417/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429516
 2020-03-10 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI418/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29422T

EPI_ISL_429807
 2020-03-10 2020-04-24
 Canada hCoV-19/Canada/MB_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A C8139T G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430136 MT627621
 2020-03-10 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S282/2020
 C241T C1059T C3037T C6040T C14408T A23403G G25563T C29259T

EPI_ISL_430286 MT632609
 2020-03-10 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S248/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430718
 2020-03-10 2020-04-27
 Spain hCoV-19/Spain/Madrid_H12_16/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C3037T C14408T A20268G A23403G G29734C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_430886 MT412239
 2020-03-10 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-547/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C8782T G11083T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_434125 MT632837
 2020-03-10 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S365/2020
 C17747T A17858G C18060T G20580A C21721T C26456T C27498T T28144C

EPI_ISL_434475
 2020-03-10 2020-04-29
 Greece hCoV-19/Greece/134/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T C14805T G26144T G28842T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434476
 2020-03-10 2020-04-29
 Greece hCoV-19/Greece/135/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434636 MT295464
 2020-03-10 2020-04-06
 United States SARS CoV-2/human/USA/UF-1/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_434643
 2020-03-10 2020-04-30
 Sweden hCoV-19/Sweden/20-05448/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_434644
 2020-03-10 2020-04-30
 Sweden hCoV-19/Sweden/20-05469/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_435129
 2020-03-10 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L1758/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435133
 2020-03-10 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L4184/2020
 G2494A C18501T

EPI_ISL_435311
 2020-03-10 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0418/2020
 A1- A5C C241T C3037T A6276G C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_435312
 2020-03-10 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29878G AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_435627
 2020-03-10 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC148/2020
 C15848T G29711T

EPI_ISL_435634
 2020-03-10 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC155/2020
 G27798A C27874T

EPI_ISL_436074 MT434805
 2020-03-10 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0862NYC/2020
 C241T C1059T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436075 MT434806
 2020-03-10 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0863NYC/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436803 MT439233
 2020-03-10 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436965
 2020-03-10 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-284/2020
 C241T GTTATG515- C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_437657
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-242/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29422T

EPI_ISL_437658
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-243/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437659
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-244/2020
 G1440A G2891A C7011T

EPI_ISL_437661
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-246/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437662
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-247/2020
 C241T C1059T C3037T -11075T C14408T G20419T A23403G G25563T

EPI_ISL_437664
 2020-03-10 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-251/2020
 G1440A G2891A C7011T

EPI_ISL_437900 MT459908
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/248_32261/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C6312G C14408T A15593G C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437903 MT459915
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/243_32202/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C10202T C14408T A23403G C25350T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437905 MT459917
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/246_32206/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C5183T C14408T C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437923
 2020-03-10 2020-05-12
 Austria hCoV-19/Austria/CeMM0034/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437928
 2020-03-10 2020-05-12
 Austria hCoV-19/Austria/CeMM0039/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437974
 2020-03-10 2020-05-12
 Austria hCoV-19/Austria/CeMM0116/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_438025
 2020-03-10 2020-05-12
 Austria hCoV-19/Austria/CeMM0183/2020
 C241T C3037T G12832A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_441410
 2020-03-10 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1023D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444841
 2020-03-10 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1272/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_445251
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C313T C3037T C14408T A23403G C25782T C28102T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_445253
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_10/2020
 A1C C241T C3037T C14408T C18877T A23403G G25563T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834C

EPI_ISL_445255
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_12/2020
 A5G G7C C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC C29109T CTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29831-

EPI_ISL_445256
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_13/2020
 AT1GGTTTATGATCCTTTGCAACCTGAA A4T T76W T78K C241T C313T C3037T C14408T G18826T G20006T A23403G GGG28881AAC TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834C

EPI_ISL_445257
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_14/2020
 -2ACACAGTTTATGATCCTTTGCAACCTGAA -5GACAGAATGTACAT T76W T78K C8782T C14599T G18826T C19983T C26088T C26873T T28144C CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_445259
 2020-03-10 2020-05-15
 Chile hCoV-19/Chile/Santiago_16/2020
 TTAAAGGTTTATACCT2- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834C

EPI_ISL_447646 MT459902
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/239_32178/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447647 MT459907
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/247_32207/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447648 MT459909
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/250_32267/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450087
 2020-03-10 2020-05-20
 United States hCoV-19/USA/NY-PV09407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14178T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450113
 2020-03-10 2020-05-20
 United States hCoV-19/USA/NY-PV09436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450114
 2020-03-10 2020-05-20
 United States hCoV-19/USA/NY-PV09437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_452105 MT512433
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/TX-CDC-3008/2020
 C241T C1059T C3037T C14408T A23403G G25015K G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452106 MT512434
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/LA-CDC-0499/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452107 MT512435
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/LA-CDC-0757/2020
 C241T C1059T C1913T C3037T C14408T A23403G G25563T C27964T C28099T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452108 MT512436
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/MN-CDC-0103/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452112 MT512440
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/TX-CDC-3009/2020
 C241T C2416T C3037T T9708C C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452113 MT512441
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/MN-CDC-0108/2020
 T490A C3177T T3766C C5211T C8782Y A16790R T18736C C24034T T26729C C27635Y G28077S T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452114 MT512442
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/KS-CDC-4589/2020
 C241T C3037T C14408T A23403G C23683Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452117 MT512445
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/NJ-CDC-7300/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452133 MT512416
 2020-03-10 2020-05-26
 United States SARS-CoV-2/human/USA/MN-CDC-0106/2020
 C8782T T10480C C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452213
 2020-03-10 2020-05-27
 India hCoV-19/India/NIV-981/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1397A A3039G G11083T A18052G A25596G T28688C A28795G G29742T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452539
 2020-03-10 2020-05-27
 Spain hCoV-19/Spain/COV001362/2020
 C8782T A11430R G20068K C20132T C26088T T28144C

EPI_ISL_452541
 2020-03-10 2020-05-27
 Spain hCoV-19/Spain/COV001360/2020
 C8782T C10782Y C20132T C26088T T28144C

EPI_ISL_452735
 2020-03-10 2020-05-27
 Spain hCoV-19/Spain/COV000754/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_454004
 2020-03-10 2020-05-28
 Portugal hCoV-19/Portugal/PT0288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454005
 2020-03-10 2020-05-28
 Portugal hCoV-19/Portugal/PT0289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A17013T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454443
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08128/2020
 G1440A G2891A C7011T C18804T C23520T

EPI_ISL_454444
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08129/2020
 C241T C3037T C5547T C5730T C14408T A23403G GGG28881AAC

EPI_ISL_454445
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08131/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_454446
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08132/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454476
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08105/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454477
 2020-03-10 2020-05-28
 Sweden hCoV-19/Sweden/20-08106/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454785
 2020-03-10 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10036/2020
 ATTAAAGGTTTAT1- T514C ATG1605- C17410T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_454897
 2020-03-10 2020-05-29
 Sweden hCoV-19/Sweden/20-50283/2020
 G1440A G2891A C7011T C26568T

EPI_ISL_454898
 2020-03-10 2020-05-29
 Sweden hCoV-19/Sweden/20-50285/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_454899
 2020-03-10 2020-05-29
 Sweden hCoV-19/Sweden/20-50288/2020
 G1440A G2891A C7011T

EPI_ISL_454900
 2020-03-10 2020-05-29
 Sweden hCoV-19/Sweden/20-50292/2020
 C241T C3037T G4255T C14408T T16456G C20051T A23403G A26530G G29348T

EPI_ISL_454901
 2020-03-10 2020-05-29
 Sweden hCoV-19/Sweden/20-50293/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T G27916A

EPI_ISL_455331
 2020-03-10 2020-05-29
 Spain hCoV-19/Spain/Galicia201863/2020
 A1- A6T C8782T T9477A C14805T G25455T G25537T G25979T T28144C C28657T C28863T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_455332
 2020-03-10 2020-05-29
 Spain hCoV-19/Spain/Galicia202076/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_455356 MT539163 MW008580
 2020-03-10 2020-05-29
 United States SARS-CoV-2/human/USA/GA-EHC-086H/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- T490A C3177T C8782T A9507G T18736C C24034T T26729C G27506C C27635T T27698G G28077C T28144C A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455360
 2020-03-10 2020-05-29
 United States hCoV-19/USA/GA-EHC-087I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T T27698G G28077C T28144C A29700G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455840
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50276/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_455841
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50280/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_455843
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-08158/2020
 G1440A G2891A C7011T G25593C

EPI_ISL_455844
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-08162/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_455898
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50284/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_455899
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50286/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_455900
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50287/2020
 C241T C1059T C3037T C13506T C14408T A23403G G25563T C26201T

EPI_ISL_455901
 2020-03-10 2020-06-01
 Sweden hCoV-19/Sweden/20-50289/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_456117
 2020-03-10 2020-06-02
 Colombia hCoV-19/Colombia/INS-79253/2020
 C8782T C13384T C17470T G19735T C26088T T28144C G28985T

EPI_ISL_460821
 2020-03-10 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461001
 2020-03-10 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T15665C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461103
 2020-03-10 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T C24107T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461109
 2020-03-10 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- A27383G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461111
 2020-03-10 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_464745
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201141179/2020
 C241T A1461G C3037T C5730T C14408T T20166W C23179Y A23403G GGG28881AAC

EPI_ISL_464783
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201160065/2020
 C241T C3037T GT5743SY C14408T A23403G G24301K G25429T

EPI_ISL_464788
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201160216/2020
 ATG1605- C16247Y G20335T C20806Y

EPI_ISL_464797
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201160628/2020
 A2480G C2558T A9741R G11083T C14284Y C14805T C22088T G26144T

EPI_ISL_464817
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201161180/2020
 C241T C3037T C14408T G19677T A23403G GGG28881AAC

EPI_ISL_464830
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201161300/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_464831
 2020-03-10 2020-06-11
 United Kingdom hCoV-19/England/201161311/2020
 A2480G C2558T G11083T C14805T G26144T G29254T

EPI_ISL_466949 LR824049
 2020-03-10 2020-06-12
 Switzerland 100025
 C241T C3037T C14408T C15324T G15444T T19372K T19468Y A19548R T22516W A23403G

EPI_ISL_466951 LR824052
 2020-03-10 2020-06-12
 Switzerland 100027
 C241T C3037T C14408T C15324T A19298W C19386Y A19410R A19472M A23403G

EPI_ISL_466953 LR824064
 2020-03-10 2020-06-12
 Switzerland 100029
 C241T C3037T C14408T C15324T G15444T G19501K A23403G

EPI_ISL_466955 LR824063
 2020-03-10 2020-06-12
 Switzerland 100031
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_467951
 2020-03-10 2020-06-16
 United States hCoV-19/USA/CA-SR0416/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_467958
 2020-03-10 2020-06-16
 United States hCoV-19/USA/CA-SR0428/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_467973
 2020-03-10 2020-06-16
 United States hCoV-19/USA/CA-SR0449/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_469073
 2020-03-10 2020-06-17
 Sweden hCoV-19/Sweden/20-08130/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_471530
 2020-03-10 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_1885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G T28010C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471540
 2020-03-10 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_2307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T22510C A23403G GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475553
 2020-03-10 2020-06-23
 Sweden hCoV-19/Sweden/20-08133/2020
 T514C ATG1605- A13512G G16117T C17410T

EPI_ISL_475554
 2020-03-10 2020-06-23
 Sweden hCoV-19/Sweden/20-08136/2020
 ATG1605- T6163A C8748T C12923A C13430T C19366T T28110C

EPI_ISL_475555
 2020-03-10 2020-06-23
 Sweden hCoV-19/Sweden/20-08160/2020
 C1385T C14805T T17247C G26144T

EPI_ISL_475560
 2020-03-10 2020-06-23
 Sweden hCoV-19/Sweden/20-50237/2020
 C241T C3037T C3373A C5654T C14408T A23403G C24034T GGG28881AAC

EPI_ISL_475561
 2020-03-10 2020-06-23
 Sweden hCoV-19/Sweden/20-50243/2020
 T514C ATG1605- G3403A G23856T

EPI_ISL_475831
 2020-03-10 2020-06-25
 Austria hCoV-19/Austria/CeMM0391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22450T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475854
 2020-03-10 2020-06-25
 Austria hCoV-19/Austria/CeMM0426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475879
 2020-03-10 2020-06-25
 Austria hCoV-19/Austria/CeMM0474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22450T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475913
 2020-03-10 2020-06-25
 Austria hCoV-19/Austria/CeMM0563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476813
 2020-03-10 2020-06-26
 Singapore hCoV-19/Singapore/477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26143A G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479847
 2020-03-10 2020-07-01
 Japan hCoV-19/Japan/PG-0110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C11752T C19170A C28253T G28857T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479848
 2020-03-10 2020-07-01
 Japan hCoV-19/Japan/PG-0111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479849
 2020-03-10 2020-07-01
 Japan hCoV-19/Japan/PG-0113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A C29614T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480310
 2020-03-10 2020-07-01
 Bulgaria hCoV-19/Bulgaria/41/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_480791 MT703958
 2020-03-10 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T A4528G C14408T C17410T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_481077
 2020-03-10 2020-07-02
 Spain hCoV-19/Spain/Madrid_COV004908/2020
 C241T C1572Y C3037T C14408T A20268G A23403G

EPI_ISL_482989
 2020-03-10 2020-07-06
 United States hCoV-19/USA/MN-MDH-1268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C36T C241T C3037T C14408T A23403G C27046T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_482994
 2020-03-10 2020-07-06
 United States hCoV-19/USA/MN-MDH-1273/2020
 ATTAAAGGTTTATACC1- C8782T C15240T A17858G C18060T C20178T C21774T G25217T T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_485832 MT739438 MT913051
 2020-03-10 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0530/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C29548A

EPI_ISL_488223
 2020-03-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488241
 2020-03-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F7C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488306
 2020-03-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F7F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C21789Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488413
 2020-03-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F6F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26109T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488447
 2020-03-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F78D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C G12070K C14408T A23403G C25584A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489990
 2020-03-10 2020-07-14
 Peru hCoV-19/Peru/INS-014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T T8800C C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_490315
 2020-03-10 2020-07-15
 Peru hCoV-19/Peru/INS-016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T G10265A C14408T G14829T A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491099
 2020-03-10 2020-07-15
 United States hCoV-19/USA/SC-DHEC-0008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_491463
 2020-03-10 2020-07-17
 Peru hCoV-19/Peru/INS-013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T C17410Y C18804Y C19160Y A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_492601
 2020-03-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A481G C3037T C14408T A14691G G20398A A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492986
 2020-03-10 2020-07-20
 Italy hCoV-19/Italy/NegrarVR_7/2020
 ATTA1- C241T C3037T C14408T A23403G G25909T C27213T T29867A C29870A

EPI_ISL_495116
 2020-03-10 2020-07-22
 United Kingdom hCoV-19/England/BRIS-18547FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498006
 2020-03-10 2020-07-26
 South Korea hCoV-19/Korea/KCDC2105/2020
 AT1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498007
 2020-03-10 2020-07-26
 South Korea hCoV-19/Korea/KCDC2106/2020
 ATTAAAGG1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498008
 2020-03-10 2020-07-26
 South Korea hCoV-19/Korea/KCDC2107/2020
 ATT1- G5572T G11083T C14805T G26144T G27441T AAAAAAAAAAAA29892-

EPI_ISL_499815
 2020-03-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4B1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C11747T G29032A

EPI_ISL_499824
 2020-03-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A48D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- TGTTATGGT514- A2480G C2558T G11083T C14805T G26144T

EPI_ISL_500037
 2020-03-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A C14408T C14688T A23403G GGG28881AAC C29870A

EPI_ISL_500057
 2020-03-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A496D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R A10323G C10507T

EPI_ISL_500067
 2020-03-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4A97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_500407
 2020-03-10 2020-07-28
 Spain hCoV-19/Spain/COV005973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500429
 2020-03-10 2020-07-28
 Spain hCoV-19/Spain/COV005997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500627
 2020-03-10 2020-07-29
 Australia hCoV-19/Australia/NSW2139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T G11083T C15720T C18928T T28688C G29374A G29742T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500637
 2020-03-10 2020-07-29
 Australia hCoV-19/Australia/NSW2159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_508941
 2020-03-10 2020-08-04
 France hCoV-19/France/ARA0731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T TTTAAAGTTTCCATTTGGAATCTTGA27265- AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_508942
 2020-03-10 2020-08-04
 France hCoV-19/France/ARA07314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T G1306T C3037T C14408T C15324T A15860G G18859T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_510274
 2020-03-10 2020-08-06
 Spain hCoV-19/Spain/COV004035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_513414 MT886288
 2020-03-10 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514338 EPI_ISL_516786
 2020-03-10 2020-08-16
 Peru hCoV-19/Peru/INS-065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_516801
 2020-03-10 2020-08-24
 Singapore hCoV-19/Singapore/829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26143A G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516842
 2020-03-10 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FCAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4021T C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516870
 2020-03-10 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FBEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5302R C14408T A23403G G23608R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517958
 2020-03-10 2020-08-24
 Peru hCoV-19/Peru/INS-068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C15277T A21917G A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_524472
 2020-03-10 2020-08-28
 Peru hCoV-19/Peru/ARE-INS-087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C813T G1212T C3037T C14408T A23403G G25429T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_525592
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12669-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C12242T C13426T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525593
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12692-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28808T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525594
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12767-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C7119T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525595
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12806-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A8882G C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525596
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12813-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28808T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525598
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12848-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A8882G C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525602
 2020-03-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13459-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G640A C1059T C3037T C4655T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527974
 2020-03-10 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42184365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_534975
 2020-03-10 2020-09-14
 United Kingdom hCoV-19/England/OXON-B47F7/2020
 C241T C3037T C14408T A23403G G24077T G26167T

EPI_ISL_535720
 2020-03-10 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00213733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535721
 2020-03-10 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00213861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T G18534A A23403G G25563T G28086R T28088W CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_535723
 2020-03-10 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00214023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537426
 2020-03-10 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C583T C8782T T9477A C14805T G25979T C26527T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537828
 2020-03-10 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T G17302T C21762Y A23403G G25563T C25688T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538823
 2020-03-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA15E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G23426T C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539562
 2020-03-10 2020-09-18
 Spain hCoV-19/Spain/EX-ISCIII-201963/2020
 C241T C3037T C14408T A20268G A23403G C27476T

EPI_ISL_539564
 2020-03-10 2020-09-18
 Spain hCoV-19/Spain/GA-ISCIII-201859/2020
 A1- A27C C8782T T9477A C14805T GACATGAGTA21394- T21434A G25537T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539565
 2020-03-10 2020-09-18
 Spain hCoV-19/Spain/GA-ISCIII-202075/2020
 A1- T3A G11083T C19366T T21181C G26144T G29474T G29742T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_547450
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Curacao/CW-RIVM-10092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1606C G29032A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547451
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Curacao/CW-RIVM-10093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1606C G29032A C29754T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547452
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Curacao/CW-RIVM-10094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1606C G29032A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547461
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547491
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547501
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2000C C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547502
 2020-03-10 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549176
 2020-03-10 2020-09-28
 Sweden hCoV-19/Sweden/RV-FOI-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C1912T C25047T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560621
 2020-03-10 2020-09-29
 France hCoV-19/France/GE8771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G28690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560972
 2020-03-10 2020-09-30
 Sweden hCoV-19/Sweden/20-50303/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G G23663T C23731T T24311C GGG28881AAC

EPI_ISL_569250
 2020-03-10 2020-10-02
 France hCoV-19/France/IHU-0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T G11083T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT292570
 2020-03-10 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT292572
 2020-03-10 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T T18834C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT292575
 2020-03-10 2020-04-05
 Spain SARS-CoV-2/human/ESP/Valencia16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT325575
 2020-03-10 2020-04-10
 United States SARS-CoV-2/human/USA/GA_2343/2020
 T490A C3177T C8782T T18736C C21588T C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT459850
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/134_32124/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T C14805T G26144T G28842T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459851
 2020-03-10 2020-05-11
 Greece SARS-CoV-2/human/GRC/135_32174/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT764174
 2020-03-10 2020-07-15
 United States SARS-CoV-2/human/USA/COVID20-0008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT810553
 2020-03-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0416-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810560
 2020-03-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0428-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810573
 2020-03-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0449-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873332
 2020-03-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00011/2020
 ATTA1- C8782T C17747T A17858G C18060T C21789T T28144C

MT956918
 2020-03-10 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-70062002/2020
 C241T C3037T C14408T A23403G C29250T

EPI_ISL_414648
 2020-03-11 2020-03-16
 United States hCoV-19/USA/CA-PC101P/2020
 C241T C3037T C14408T C18814T A23403G

EPI_ISL_415471 LR878338
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415472 LR878349
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415501 LR878342
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415503 LR878356
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C8782T T9477A G10523A C14805T G18662T G25273C G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415505 LR878348
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- T3541C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415506 LR878353
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- TCA12620- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415514 LR878082
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415515 LR878091
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415516 LR878078
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- ATG1605- T6163A C12923A C13430T C19366T T28110C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415534 LR878075
 2020-03-11 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T TTA21991- A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_416024
 2020-03-11 2020-03-19
 United Kingdom hCoV-19/Wales/PHW35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A C20270T C28725T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416448 MT252691
 2020-03-11 2020-03-21
 United States SARS-CoV-2/human/USA/WA-UW92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_416480
 2020-03-11 2020-03-22
 Georgia hCoV-19/Georgia/Tb-537/2020
 ATT1- A915G G11083T G23522C G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_416498
 2020-03-11 2020-03-22
 France hCoV-19/France/IDF2256/2020
 C241T C1059T C3037T C10582T C14408T A23403G C23707T G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416499
 2020-03-11 2020-03-22
 France hCoV-19/France/IDF2278/2020
 C241T C3037T C14408T C15324T A23403G C27208T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_416524
 2020-03-11 2020-03-22
 Japan hCoV-19/Japan/SMU-0311S2/2020
 G101A C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_416525
 2020-03-11 2020-03-22
 Japan hCoV-19/Japan/SMU-0311S3/2020
 C241T C3037T C14408T A23403G C29743T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_416641 MT252767
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW103/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C A29871C AAA29901-

EPI_ISL_416642 MT252768
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416643 MT252769
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW105/2020
 ATTAAAGG1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416644 MT252770
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- G6220A C8782T C17747T A17858G C18060T T28144C G29862A AAA29901-

EPI_ISL_416646 MT252772
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- A1515G C9223T G11083T C14805T T17247C G26144T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416647 MT252773
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_416648 MT252774
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW110/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416649 MT252775
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T27384C T28144C A29903-

EPI_ISL_416651 MT252777
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW113/2020
 ATTAAA1- GTTT8CACA T41- C6310T C8782T C17747T A17858G C18060T G27327T T28144C G28378T AAA29901-

EPI_ISL_416652 MT252778
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- G101A C6696T C8782T C17747T A17858G C18060T T28144C C29416T

EPI_ISL_416653 MT252779
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW115/2020
 ATTAAAGG1- A74C C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_416654 MT252780
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW116/2020
 ATTAAA1- -55C A6693G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_416655 MT252781
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C14408T A23403G G25302T G25563T AAAA29900-

EPI_ISL_416656 MT252782
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_416657 MT252783
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW119/2020
 AT1GA A4T ACC35TTH C8782T C17747T A17858G C18060T T28144C TTC29728GGG CC29732GA AG29735CT A29740T G29764T A29768C A29771C A29776T

EPI_ISL_416658 MT252784
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW120/2020
 A1- C241T C3037T C14408T A23403G -29904ANANANA

EPI_ISL_416659 MT252785
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416668 MT252748
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW130/2020
 ATTAAAG1- AACC34HTTH C8782T C17747T A17858G C18060T T27384C T28144C -29904AAAAAAAAAA

EPI_ISL_416669 MT252749
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- A3635G C8782T C17747T A17858G C18060T T28144C TG29867-A C29870A

EPI_ISL_416674 MT252752
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AACC34CTTT C241T C3037T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416675 MT252753
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34CTTH A1515G G1944A C9223T G11083T C14805T T17247C A17799G C23987T G26144T G29862A -29904ANANAHATANA

EPI_ISL_416676 MT252754
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_416678 MT252756
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416679 MT252757
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW141/2020
 ATTAAAGGTTTATACCTTCCCAGG1- CAAACCAACC28- C8782T C17059A C17747T A17858G C18060T T28144C T28229G A29903C

EPI_ISL_416680 MT252758
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAAC1- C8782T C9565T C17747T A17858G C18060T T28144C G29688T G29692T G29862A AAAAAAA29897-

EPI_ISL_416681 MT252759
 2020-03-11 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- -55C C8782T C17747T A17858G C18060T T28144C GA29868VT

EPI_ISL_417031
 2020-03-11 2020-03-24
 Australia hCoV-19/Australia/QLDID919/2020
 ATTAAA1- C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_417032
 2020-03-11 2020-03-24
 Australia hCoV-19/Australia/QLDID920/2020
 ATTAAA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_417033
 2020-03-11 2020-03-24
 Australia hCoV-19/Australia/QLDID921/2020
 ATTAA1- C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_417211
 2020-03-11 2020-03-25
 New Zealand hCoV-19/NewZealand/CoV001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTT1- T514C ATG1605- C22591T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_417212
 2020-03-11 2020-03-25
 New Zealand hCoV-19/NewZealand/CoV002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGA1- C1684T G11083- G13627T C14805T C15540T G26144T A28338G A29403G GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_417397
 2020-03-11 2020-03-25
 Australia hCoV-19/Australia/NSW39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417398
 2020-03-11 2020-03-25
 Australia hCoV-19/Australia/NSW40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1397A C2113T A9483G G11083T C18928T A19974G T28688C G29374A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417405
 2020-03-11 2020-03-25
 Australia hCoV-19/Australia/NSW52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G11083T C14805T T17247C G26144T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417406
 2020-03-11 2020-03-25
 Australia hCoV-19/Australia/NSW53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417458 MT582487
 2020-03-11 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-13/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29540T

EPI_ISL_417459 MT582486
 2020-03-11 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-14/2020
 G1440A G2891A

EPI_ISL_417460 MT582485
 2020-03-11 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-15/2020
 C241Y T514Y C1059Y C3037Y C14408Y C17410T A23403R G25563K G29422K

EPI_ISL_417461 MT582484
 2020-03-11 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-16/2020
 G1440A G2891A

EPI_ISL_417462 MT582483
 2020-03-11 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-17/2020
 G1440A G2891A

EPI_ISL_417690
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/125/2020
 C218T C241T C1059T C1302T C3037T G8911T C14408T T14907G A23403G G25563T G29553A

EPI_ISL_417691
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/111/2020
 C241T C3037T C14408T A23403G

EPI_ISL_417722
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/110/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417748
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/109/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417770
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/112/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_417779
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/106/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417783
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/123/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_417871
 2020-03-11 2020-03-27
 Iceland hCoV-19/Iceland/9/2020
 C8782T T9445C C17747T A17858G A24694T T28144C G29140T

EPI_ISL_417924
 2020-03-11 2020-03-27
 Colombia hCoV-19/Colombia/INS-79256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17470T C26088T T28144C G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417956
 2020-03-11 2020-03-27
 Spain hCoV-19/Spain/Madrid_H5_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G ACCACACAAGGCAGATGGGCTATATAAACGTTTTC29544- G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_418002
 2020-03-11 2020-03-28
 Portugal hCoV-19/Portugal/PT0017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418211
 2020-03-11 2020-03-29
 Senegal hCoV-19/Senegal/082/2020
 C241T C3037T C14408T A23403G G27261T

EPI_ISL_418212
 2020-03-11 2020-03-29
 Senegal hCoV-19/Senegal/087/2020
 C241T C3037T C14408T A23403G G27261T

EPI_ISL_418324
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL3318/2020
 A1- G1397A C9693T G11083T G20887A C21627T T28688C C28830T G29742T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418332
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL0052/2020
 A1- C8782T C17747T A17858G C18060T C21614T A24694T G27478T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418347
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL3741/2020
 A1- C241T C2416T C3037T C14408T A23403G G25563T A29413G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418352
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL5672/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T G29422T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418360
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL3692/2020
 A1- C241T C1059T C3037T C14408T A18702T A23403G G25563T G28373T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418363
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL3695/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418370
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL0654/2020
 A1- C241T C3037T C3373A C9733T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418374
 2020-03-11 2020-03-11
 Canada hCoV-19/Canada/ON_PHL4232/2020
 A1- C241T C1059T C3037T C14408T T18212A A23403G G23593A A23597T T23600C G25563T G28368A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418669
 2020-03-11 2020-03-30
 United Kingdom hCoV-19/England/20116022902/2020
 T586C C5974T C11074T G11083T G13627T C14805T C15540T G26144T A28338G C28961T

EPI_ISL_418670
 2020-03-11 2020-03-30
 United Kingdom hCoV-19/England/20116025603/2020
 ATG1605- C25207T A25594C

EPI_ISL_418816
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_0443574/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_418831
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_5275718/2020
 C241T C3037T C14408T C18348T C18877T A23403G G25563T

EPI_ISL_418832
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_5282984/2020
 C228T G1397A C5467T G9479T A9514G G11083T G26720C T28688C T28835C G29742T

EPI_ISL_418833
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_5306970/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_418834
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_5522039/2020
 A187G C241T C3037T C14408T C17676T C21721T A23403G

EPI_ISL_418835
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_5979789/2020
 C241T C3037T C6762T C14408T C18348T C18877T A23403G G25563T

EPI_ISL_418841
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_6981299/2020
 C8782T G14197A C17747T A17858G C18060T T28144C

EPI_ISL_418842
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_6997898/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_418845
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_7515663/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_418853
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_8894200/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418854
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_8896915/2020
 C8782T A17858G C18060T T25468C T28144C

EPI_ISL_418855
 2020-03-11 2020-03-31
 Canada hCoV-19/Canada/BC_8897642/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418965 MT334541
 2020-03-11 2020-03-31
 United States SARS-CoV-2/human/USA/UT-00023/2020
 A1- C241T C3037T C14408T C16289T A23403G G25429T C29870A

EPI_ISL_418967 MT334542
 2020-03-11 2020-03-31
 United States SARS-CoV-2/human/USA/UT-00025/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_419301 LC547523
 2020-03-11 2020-04-02
 Japan hCoV-19/Japan/P4-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419573
 2020-03-11 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS1874423/2020
 C241T C3037T G10368A C14408T G18844R A20268G A23403G G29734C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419587
 2020-03-11 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS4691488/2020
 C241T C829Y C3037T G11858A C14408T C15324T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_419590
 2020-03-11 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS5032431/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27020R AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_419606
 2020-03-11 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS9862689/2020
 C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419666
 2020-03-11 2020-04-03
 Austria hCoV-19/Austria/CeMM0013/2020
 C241T C1059T C3037T C14408T G19962R A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_419711 MT322407
 2020-03-11 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T T28144C G29868A C29870A

EPI_ISL_419713 MT322411
 2020-03-11 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A361G C8782T G22468T T25559G T28144C G28878A G29742A

EPI_ISL_419756 MT450953
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10350T C14408T C15277T C15324T G20887R A23403G

EPI_ISL_419757 MT450954
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC39/2020
 A1- C21T C241T C1059T C3037T A4015G G4951A C14408T A23403G G25563T

EPI_ISL_419758 MT450955
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC40/2020
 A1- C8782T T10771C C17747T A17858G C18060T T28144C G29751T

EPI_ISL_419760 MT450956
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC41/2020
 ATTA1- C8782T T10771C C17747T A17858G C18060T T28144C C28315T G29751T

EPI_ISL_419761 MT450957
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC42/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A30T C6312A G11083T C13730T C23929T C28311T

EPI_ISL_419763 MT450958
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5457A C14408T A23403G GGG28881AAC

EPI_ISL_419767 MT450959
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_419802 MT450960
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419816 MT450961
 2020-03-11 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC46/2020
 ATTA1- A1646G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_420028 MT322408
 2020-03-11 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C37S C8782T C17747T A17858G C18060T T28144C C29870A

EPI_ISL_420029 MT322409
 2020-03-11 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0019/2020
 ATT1- C8782T C17747T A17858G C18060T T28144C C29870A

EPI_ISL_420109
 2020-03-11 2020-04-05
 Singapore hCoV-19/Singapore/32/2020
 ATTAAAGGTTT1- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420110
 2020-03-11 2020-04-05
 Singapore hCoV-19/Singapore/33/2020/P1
 ATTAAAGGTTTA1- A4473G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420125
 2020-03-11 2020-04-05
 Spain hCoV-19/Spain/Valencia41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21786A A23403G G29009A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420146
 2020-03-11 2020-04-05
 Norway hCoV-19/Norway/1955/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_420899
 2020-03-11 2020-04-07
 Germany hCoV-19/Germany/BAV-V2010492/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_421351 MT370892
 2020-03-11 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G10265A C14408T A23403G GGG28881AAC AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421500
 2020-03-11 2020-04-08
 France hCoV-19/France/HF2306/2020
 C241T C1059T C3037T T3710C C10582T C14408T A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_422643 LR877943
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422676 LR877723
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C27920T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422677 LR877725
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C25511T C29719T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422678 LR877731
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T C14408T A23403G A24862G A26871C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422840 LR878156
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422842 LR878171
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C2485T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422843 LR878184
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422866 LR878115
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20647T G22661T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422867 LR878123
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20647T G22661T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422873 LR877741
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422875 LR877732
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T T21158C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422876 LR877735
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422897 LR878128
 2020-03-11 2020-04-11
 Netherlands hCoV-19/Netherlands/Utrecht_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20647T G22661T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424672
 2020-03-11 2020-04-13
 Mexico hCoV-19/Mexico/Puebla-InDRE_05/2020
 C241T A1308G C3037T C14408T C17639T A20268G A23403G G27506T C28638T A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_425212
 2020-03-11 2020-04-14
 Spain hCoV-19/Spain/Valencia88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425213
 2020-03-11 2020-04-14
 Spain hCoV-19/Spain/Valencia89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425466
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DEEA/2020
 ATG1605- C20270T

EPI_ISL_425672
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20936T C23086T A23403G C27046T GGG28881AAC GCTAGAATG28895- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425758
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A761G C1059T C3037T A6825C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425821
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB015/2020
 C241T A1515G C14805T A17799G

EPI_ISL_425822
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB016/2020
 C241T C1059T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425836
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB030/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425842
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB036/2020
 C241T C1059T C3037T C14408T A23403G

EPI_ISL_425844
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB038/2020
 C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425847
 2020-03-11 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB042/2020
 C241T C3037T C14408T G16075T T18689A A23403G C27046T GGG28881AAC

EPI_ISL_426294
 2020-03-11 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-13468-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T G1738T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426513
 2020-03-11 2020-04-17
 United States hCoV-19/USA/AZ-TG268903/2020
 C8782T T11194C C15240T C17747T A17858G C18060T C21774T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426514
 2020-03-11 2020-04-17
 United States hCoV-19/USA/AZ-TG268905/2020
 C241T C379A C1059T C1267T C3037T T7672C C14408T C22802G A23403G G25563T A29871C AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_427300
 2020-03-11 2020-04-18
 Brazil hCoV-19/Brazil/RJ-477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G A26927G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_427301
 2020-03-11 2020-04-18
 Brazil hCoV-19/Brazil/RJ-477i/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G A26927G GGG28881AAC GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_428355
 2020-03-11 2020-04-20
 France hCoV-19/France/IDF2251/2020
 T10A C241T C1059T C3037T T6175C C10582T C14408T A23403G C23707T G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_428356
 2020-03-11 2020-04-20
 France hCoV-19/France/IDF2252/2020
 C241T C1059T C3037T C10582T C14408T A23403G C23707T G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_428357
 2020-03-11 2020-04-20
 France hCoV-19/France/IDF2253/2020
 C241T C1059T C3037T C10582T C14408T A23403G C23707T G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_428677
 2020-03-11 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP20_2327/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T T9477A G12522A C14805T G25979T T28144C C28657T C28863T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856C

EPI_ISL_428681
 2020-03-11 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP27_2548/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840CT

EPI_ISL_428682
 2020-03-11 2020-04-21
 Spain hCoV-19/Spain/Madrid_LP30_2226/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C7279T C14408T A20268G A23403G -29826T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_428703
 2020-03-11 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_3304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428704
 2020-03-11 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_3405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T12364A A19719T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428860
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Moscow-62505/2020
 C241T C3037T C14408T C18568T A23403G A26530G

EPI_ISL_428861
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Moscow-62501/2020
 C241T C3037T C14408T G18310A A23403G A26530G

EPI_ISL_428862
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Moscow-62506/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_428863
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Moscow-62508/2020
 C241T C3037T C10208T C14408T A23403G G25459T GGG28881AAC

EPI_ISL_428864
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Moscow-62502/2020
 C241T C3037T C10208T C14408T A23403G G25459T GGG28881AAC

EPI_ISL_428865
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Lipetsk-62704/2020
 C241T C2939T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_428866
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Lipetsk-62707/2020
 C241T C3037T C14408T A19126G A23403G C27046T GGG28881AAC

EPI_ISL_428867
 2020-03-11 2020-04-22
 Russia hCoV-19/Russia/Krasnodar-63401/2020
 C241T C3037T C14408T A23403G A23618G C27046T GGG28881AAC

EPI_ISL_429115
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08142/2020
 G1440A G2891A C7011T

EPI_ISL_429117
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08145/2020
 C241T C3037T C14408T G17140T A23403G C27046T GGG28881AAC

EPI_ISL_429118
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08146/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429119
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08148/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429120
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08149/2020
 C241T C3037T G11083T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_429121
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08151/2020
 C241T C1059T C3037T C14408T G17721T A23403G G25563T C27294T

EPI_ISL_429122
 2020-03-11 2020-04-23
 Sweden hCoV-19/Sweden/20-08155/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_429282
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH24/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429283
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH25/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429284
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH26/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_429285
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH27/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T C25658T

EPI_ISL_429287
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH29/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_429406
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI213/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429407
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI215/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429517
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI419/2020
 C241T C1059T C3037T G5518T C14408T C15989T A23403G G25563T C29546T

EPI_ISL_429518
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI420/2020
 C241T C3037T G10870T C14408T C23086T A23403G C27046T GGG28881AAC

EPI_ISL_429520
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI423/2020
 C241T C1059T C3037T C14408T A15189G A23403G G25563T C28171T

EPI_ISL_429521
 2020-03-11 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI424/2020
 C241T C1059T C1302T A2444G C3037T C14408T A23403G G25563T

EPI_ISL_430282
 2020-03-11 2020-04-26
 United States hCoV-19/USA/WA-S244/2020
 C8782T C17747T A17858G C18060T C26735T C27577T T28144C

EPI_ISL_430289 MT632570
 2020-03-11 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S251/2020
 C6310T C8782T C17747T A17858G C18060T G27327T T28144C

EPI_ISL_430719
 2020-03-11 2020-04-27
 Spain hCoV-19/Spain/Madrid-LP29/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C217T TCAAAGGGATTGTACAGAAAGTGTGTT2402- A2443G -3852A TT4273GA AGAGTGT6876- TCTACTCAACCGCTGCTTTAGGTGTTTTAATGTCTAATTTAGGCATGCCTTCTTACTGTACTGGTTACAGAGAAGGCTATTTGAACTCTACTAATGTCACTATTGCAACCTACTGTACTGGTTCTATACCTTGTAGTGTTTGTCTT6996- G11083T A21551T G26144T ATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCTTGTAAAACCTTCTTTTTACGTTTACTCTCGTGTTAAAAATCTGAATTCTTCTAGAGTTCCTGATCTTCTGG26358C C27883T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_430721
 2020-03-11 2020-04-27
 Spain hCoV-19/Spain/Madrid-LP33/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G7393T C14408T G15327T A20268G A23403G -29826T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_430848
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08144/2020
 G1440A G2891A C7011T G11083T

EPI_ISL_430849
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08147/2020
 C241T C1059T C3037T A12393G C14408T G20419T A23403G G25563T C27294T

EPI_ISL_430850
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08150/2020
 C241T C1059T C3037T C14408T G17721T A23403G G25563T C27294T

EPI_ISL_430851
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08152/2020
 C241T C1059T C3037T C14408T G20419T A23403G G25563T C27294T

EPI_ISL_430852
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08154/2020
 G600A G1820A A2480G C2558T T8599C G11083T C14805T C14925T G26144T

EPI_ISL_430853
 2020-03-11 2020-04-28
 Sweden hCoV-19/Sweden/20-08167/2020
 C241T C1059T A2219G C3037T G3340T C14408T C15237T C23185T A23403G G25563T

EPI_ISL_430867 MT412252
 2020-03-11 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ACC31TTY C36T T7084C C8782T C17747T A17858G C18060T C21410T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430870 MT412253
 2020-03-11 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-518/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430878 MT412246
 2020-03-11 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T A14604G C17747T A17858G C18060T C21911T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430879 MT412242
 2020-03-11 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-526/2020
 TAAAGGTTTATACCTTCCCAGGTAACAAA3- C36T C241T C1059T C3037T C14408T A23403G G25563T -29904AAAAAAAAAAA

EPI_ISL_430882 MT412245
 2020-03-11 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-536/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T G15760A A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_431102
 2020-03-11 2020-04-29
 India hCoV-19/India/GMC-KN318/2020
 C241T C3037T C14408T A23403G

EPI_ISL_434471
 2020-03-11 2020-04-29
 Greece hCoV-19/Greece/149/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1440A G2891A TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434473
 2020-03-11 2020-04-29
 Greece hCoV-19/Greece/136/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G24236T GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434474
 2020-03-11 2020-04-29
 Greece hCoV-19/Greece/137/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A6646G C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434479
 2020-03-11 2020-04-29
 Greece hCoV-19/Greece/138/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434737
 2020-03-11 2020-05-01
 United States hCoV-19/USA/TX-HMH028/2020
 C241T C3037T C14408T G16741T C18877T A23403G G25563T

EPI_ISL_435058
 2020-03-11 2020-05-02
 South Africa hCoV-19/South Africa/R02606/2020
 C241T C3037T T7630G T7640G T7642G T7648A T8329G C11499A G11501C C13620T C14408T A18230T A18238T A18245T C18248T A18250T A18253T A18259T A18269T A18277T A18279T A18282T A18284T G18286T A18288T A18294T GA18297TT C21595T A23403G T23437A T26631A T26651A G28895T T29604A

EPI_ISL_435136
 2020-03-11 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L5621/2020
 C241T C3037T C13568T C14408T A23403G

EPI_ISL_435144
 2020-03-11 2020-05-03
 Spain hCoV-19/Spain/Madrid_LP28_2522/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A23403G T27803C GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_435631
 2020-03-11 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC152/2020
 C8782T A16467G C17747T A17858G C18060T C23185T T28144C C29200T

EPI_ISL_435636
 2020-03-11 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC157/2020
 T9250C G9973A A13510G G29711T

EPI_ISL_435637
 2020-03-11 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC158/2020
 T18278C C20628T G29711T

EPI_ISL_435674
 2020-03-11 2020-05-05
 Brunei hCoV-19/Brunei/2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- A46G T286Y G2897A C6312A A9930R G11083T C13730T A14620R C18747Y C21005Y A21080W C23929T G25198R C28311T GATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29751-

EPI_ISL_435675
 2020-03-11 2020-05-05
 Brunei hCoV-19/Brunei/3/2020
 A1- G2897A C6312A A9683R G11083T C13730T C23929T C28311T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_436804 MT439234
 2020-03-11 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437228
 2020-03-11 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0029/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25585T

EPI_ISL_437246
 2020-03-11 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0047/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437247
 2020-03-11 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0048/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_437248
 2020-03-11 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0049/2020
 C241T C1812T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_437611 MT447167
 2020-03-11 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI204487-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A1515G C9223T G11083T A14597G C14805T T17247C A17799G G26144T A28615G TACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29748-

EPI_ISL_437901 MT459910
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/251_32400/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G2229A C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437908 MT459922
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/264_32497/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A23403G C28826T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437941
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0071/2020
 C241T C3037T C14408T T22521K A23403G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437942
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0073/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437976
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0119/2020
 T6163A C12923A C13430T C19366T T22521K A27379R T28110C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437978
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0121/2020
 C241T C1059T C3037T C14408T C19961T T22521K A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437979
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0123/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437980
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0124/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437981
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0125/2020
 C241T C1059T C3037T G9190T C14408T G15380T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_437982
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0126/2020
 C241T C3037T C3373M C6629Y C14408T T22521K A23403G G25563K GGG28881RRS TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437983
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0127/2020
 C241T C1059Y C3037T C3373M C14408T C14980Y G15380K A23403G G25563K GGG28881RRS AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_437984
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0128/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438026
 2020-03-11 2020-05-12
 Austria hCoV-19/Austria/CeMM0184/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438028
 2020-03-11 2020-05-12
 Italy hCoV-19/Austria/CeMM0186/2020
 C241T C3037T G3994T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438230
 2020-03-11 2020-05-12
 United States hCoV-19/USA/DC-HP00072/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T

EPI_ISL_438234
 2020-03-11 2020-05-12
 United States hCoV-19/USA/MD-HP00076/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_441412
 2020-03-11 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1023F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_443195
 2020-03-11 2020-05-12
 Singapore hCoV-19/Singapore/103/2020
 T76W T78K C6312A C8139T G11083T C13730T T14696W C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_444817
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1235/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444818
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1238/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_444819
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1239/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_444820
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1241/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444822
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1243/2020
 G1440A G2891A C7011T G29645T

EPI_ISL_444823
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1244/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444824
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1245/2020
 G1440A G2891A C7011T

EPI_ISL_444825
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1246/2020
 C241T C3037T C13499T C14408T A23403G C24096T G25266T C27046T GGG28881AAC

EPI_ISL_444826
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1248/2020
 C241T C1059T C3037T C14408T G23401T A23403G G25563T

EPI_ISL_444827
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1249/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444828
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1250/2020
 T514C ATG1605- C21648T C23758T C25517T

EPI_ISL_444829
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1252/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444831
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1257/2020
 C241T C1059T C3037T C14408T G17808C A23403G G25563T

EPI_ISL_444832
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1260/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_444890
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-756/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444891
 2020-03-11 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-757/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444994
 2020-03-11 2020-05-14
 United States hCoV-19/USA/CA_NHRC_01/2020
 ATTAAAGGTTTAT1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_445221
 2020-03-11 2020-05-15
 Sweden hCoV-19/Sweden/20-05444/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_445254
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G C29144T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834C

EPI_ISL_445258
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_15/2020
 T2C A4T C8782T T9477A C14805T G25979T T28144C C28657T A28692R C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_445260
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T T9477A A12506R C14805T C21812T G25979T C26735T T28144C C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_445261
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_18/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C6317A C14408T A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445262
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_19/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G1085T C3037T C14408T A23403G CTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29831-

EPI_ISL_445263
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T A7636R G9136R C14408T A20268G A23403G TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834CT

EPI_ISL_445265
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Santiago_22/2020
 -2ACACAGTTTATGATCCTTTGCAACCTGAA -5GACTCATTCAAGGAGGAGTT C241T C3037T C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_445332
 2020-03-11 2020-05-15
 Chile hCoV-19/Chile/Chillan_3/2020
 ATTAAAGGTTTATACC1- C241T C3037T T7034A C14408T A20268G C21846T A23403G CA29838TG GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_447253
 2020-03-11 2020-05-17
 Taiwan hCoV-19/Taiwan/TSGH-27/2020
 T7876C AA29902GTCCGAAAAAAAAAACAAAAGATAAAATTTAGTAAAGAGGAGATAGAAAAAAAAAACACGAC

EPI_ISL_447635 MT459864
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/149_32357/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1440A G2891A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447649 MT459912
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/254_32422/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447650 MT459913
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/255_32525/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447652 MT459920
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/262_32443/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447653 MT459921
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/263_32477/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450088
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14178T C14408T A23403G G25563T TCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCT26780- AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450089
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450091
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C6720T C8782T C17747T A17858G C18060T T28144C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450092
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C9491T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450108
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T G14580T A23403G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450110
 2020-03-11 2020-05-20
 United States hCoV-19/USA/NY-PV09433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C8782T C17747T A17858G C18060T T28144C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450351
 2020-03-11 2020-05-20
 Norway hCoV-19/Norway/Trondheim-E9/2020
 ATTAAAGGTTTATACCTTCC1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_450352
 2020-03-11 2020-05-20
 Norway hCoV-19/Norway/Trondheim-E10/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T A4761M C14408T A23403G A26530G C28603T AAAAAAAAAAAAAAA29889-

EPI_ISL_450515
 2020-03-11 2020-05-21
 Lebanon hCoV-19/Lebanon/S9_764/2020
 CT40AC C884T G1397A G8653T G11083T G22021T C25611T T28688C G29742T

EPI_ISL_450601 MT509669
 2020-03-11 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20322/2020
 C241T C1059T C3037T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_450792 MT507793
 2020-03-11 2020-05-22
 Jamaica SARS-CoV-2/homo sapien/JAM/JM-CDC-0078/2020
 G6589T -11075TTT G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450794 MT507272
 2020-03-11 2020-05-22
 Jamaica SARS-CoV-2/human/JAM/JM-CDC-4376/2020
 C6312A G11083T C11416Y C13730Y C19524T C23929T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452001
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-119/2020
 C241T C3037T C14408T A23403G

EPI_ISL_452002
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-121/2020
 C241T C1392T C3037T C14408T A20268G A23403G C24026T C27012T

EPI_ISL_452003
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-122/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452004
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-123/2020
 C241T T658C C3037T C14408T C21622T A23403G A24862G C28629T C29253T

EPI_ISL_452005
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-124/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452007
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-126/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_452008
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-127/2020
 C241T C1059T C3037T A12151G C14408T A23403G G25563T

EPI_ISL_452009
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-128/2020
 

EPI_ISL_452010
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-129/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_452012
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-131/2020
 C241T C1059T C1302T C3037T T10573C C11344T C14408T A23403G G25563T G26842A

EPI_ISL_452013
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-134/2020
 C218T C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452014
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-135/2020
 C241T C1059T C1302T C3037T C14408T A20541G A23403G G25563T

EPI_ISL_452015
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-136/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_452016
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-137/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452017
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-138/2020
 C241T C1059T C3037T C14408T G15380T G19480A A23403G G25563T

EPI_ISL_452018
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-139/2020
 C241T C1059T C3037T C14408T C20762T A23403G G25563T

EPI_ISL_452019
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-140/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_452020
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-141/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452021
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-142/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452022
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-143/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452023
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-144/2020
 G1440A G2891A C7011T G25593C

EPI_ISL_452024
 2020-03-11 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-145/2020
 C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452115 MT512443
 2020-03-11 2020-05-26
 United States SARS-CoV-2/human/USA/TX-CDC-8001/2020
 T490A C3177T C8782T T18736Y C24034T C26204T T26729C G26775T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452701
 2020-03-11 2020-05-27
 Spain hCoV-19/Spain/COV000847/2020
 C8782T T9477A C14805T C16375Y C16949Y G25979T T28144C C28657T C28863T C29870A

EPI_ISL_452703
 2020-03-11 2020-05-27
 Spain hCoV-19/Spain/COV000843/2020
 A5212G C8782T T9477A C14805T G25599T G25979T T28144C C28657T C28863T

EPI_ISL_454007
 2020-03-11 2020-05-28
 Portugal hCoV-19/Portugal/PT0291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454222
 2020-03-11 2020-05-28
 Portugal hCoV-19/Portugal/PT0498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G26144T A29684G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454758
 2020-03-11 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10009/2020
 ATTAAAGGTTTAT1- C241T C3037T G11761T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_454786
 2020-03-11 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10037/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T C20647T G22661T A23403G A24862G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_454902
 2020-03-11 2020-05-29
 Sweden hCoV-19/Sweden/20-50294/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_455333
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Galicia202230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A20268G A23403G T29832A T29834C CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_455334
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Galicia202282/2020
 A1- C241T C3037T C7604T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455335
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Galicia202297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A20268G A21395T A23403G TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_455344
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Melilla202020/2020
 ATTAAAGGTTTATACC1- C241T C3037T C5884T A8449G G8470T C14408T A20268G A23403G GAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29703-

EPI_ISL_455345
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Melilla202134/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T A8537T C14408T G21225T T21272C A23403G G25563T G28620T TAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29823-

EPI_ISL_455346
 2020-03-11 2020-05-29
 Spain hCoV-19/Spain/Melilla202135/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C17639T A20268G A21356G A23403G C28638T TTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29820-

EPI_ISL_455439
 2020-03-11 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_15/2020
 ATTA1- C8782T C17747T A17858G C18060T C21707T C23422T A24694T T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_455842
 2020-03-11 2020-06-01
 Sweden hCoV-19/Sweden/20-08156/2020
 C241T C1059T C3037T C12885T C14408T A23403G G25563T

EPI_ISL_455903
 2020-03-11 2020-06-01
 Sweden hCoV-19/Sweden/20-50279/2020
 T239A G1440A G2891A C7011T G25593C

EPI_ISL_455910
 2020-03-11 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0107/2020
 A1- C6312A G11083T C13730T C19524T C23929T C28311T

EPI_ISL_456163
 2020-03-11 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0712/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457799 MT646071
 2020-03-11 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00057/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_457808 MT646078
 2020-03-11 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00067/2020
 C241T C629T C1059T C3037T C14408T C21772T A23403G C23453T G25563T

EPI_ISL_460440 MT520515
 2020-03-11 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00006/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_460467 MT520542
 2020-03-11 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00004/2020
 ATTA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_460472 MT520547
 2020-03-11 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00005/2020
 ATTAAAGGTTTATACC1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_461147
 2020-03-11 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T6353C C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462210
 2020-03-11 2020-06-08
 Belgium hCoV-19/Belgium/BWM-0311356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_463008
 2020-03-11 2020-06-09
 Germany hCoV-19/Germany/Muenster_FI1103201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC G29540T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_463741
 2020-03-11 2020-06-10
 Cyprus hCoV-19/Cyprus/001/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_464721
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201140309/2020
 G11083T C14805T T17247C A19828R G26144T

EPI_ISL_464734
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201140432/2020
 GT5743SY G11083T G26144T

EPI_ISL_464770
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160002/2020
 C241T C3037T C11563Y C13329Y A13341M C14408T A20728M G22051R A22116W G22147R C22251Y A23403G G29097K

EPI_ISL_464776
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160010/2020
 T11G C241T C3037T C14408T T17835C A23403G

EPI_ISL_464777
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160011/2020
 C241T C3037T C14408T T17835C A23403G

EPI_ISL_464778
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160012/2020
 C241T C3037T C14408T T17835C A23403G

EPI_ISL_464785
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160068/2020
 C241T C3037T GT5743SY C14408T A23403G C25096T GGG28881AAC

EPI_ISL_464790
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160243/2020
 T1368C C6990T G11083T C14805T A22500W C23707T G26144T

EPI_ISL_464791
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160258/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_464795
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160276/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_464803
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201160756/2020
 C241T C3037T C14408T G21508R A23403G

EPI_ISL_464824
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201161219/2020
 C241T G942R C3037T C14408T A23403G GGG28881AAC

EPI_ISL_464843
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201161462/2020
 C241T C3037T G3901T C14408T A20268G A23403G

EPI_ISL_464849
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201161484/2020
 C241T C2416T C2509Y C3037T A9848R C14408T C14786T A16597G G19292K G20578T A23403G G25563T

EPI_ISL_464863
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201161611/2020
 ATG1605- C20270T A29683T

EPI_ISL_464900
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/201180343/2020
 C241Y C3037Y GT5743SY C14408Y A23403R GGG28881RRS

EPI_ISL_464948
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/20118104004/2020
 ATG1605- G17266A

EPI_ISL_464949
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/20118104104/2020
 ATG1605- G17266A

EPI_ISL_465084
 2020-03-11 2020-06-11
 United Kingdom hCoV-19/England/20119060904/2020
 A187G C241T C1997T C3037T C8290T C14408T A23403G A24110T G24821T

EPI_ISL_466959 LR824069
 2020-03-11 2020-06-12
 Switzerland 100035
 C241T C3037T C14408T T22497Y T22516W A23403G C27046T GGG28881AAC

EPI_ISL_466960 LR824079
 2020-03-11 2020-06-12
 Switzerland 100036
 C241T C3037T C6762T C14408T C15324T A19298W TT22515YW A23403G

EPI_ISL_466961 LR824074
 2020-03-11 2020-06-12
 Switzerland 100037
 C241T C3037T G4255T C10582T C14408T T19329Y C19343S T19401W G22104K C22347S T22516W A23403G G25947A A26530R C29249T

EPI_ISL_466970 LR824071
 2020-03-11 2020-06-12
 Switzerland 100048
 C241T C3037T C14408T T19335Y T19500Y A19548R T22463W A23403G

EPI_ISL_467925 MT614520
 2020-03-11 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1545T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467959
 2020-03-11 2020-06-16
 United States hCoV-19/USA/CA-SR0429/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468731
 2020-03-11 2020-06-17
 Belgium hCoV-19/Belgium/UGent-82/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468732
 2020-03-11 2020-06-17
 Belgium hCoV-19/Belgium/UGent-83/2020
 C241T C3037T C4809T C14408T A23403G

EPI_ISL_468734
 2020-03-11 2020-06-17
 Belgium hCoV-19/Belgium/UGent-86/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_468735
 2020-03-11 2020-06-17
 Belgium hCoV-19/Belgium/UGent-87/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468736
 2020-03-11 2020-06-17
 Belgium hCoV-19/Belgium/UGent-88/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_469282
 2020-03-11 2020-06-18
 France hCoV-19/France/211_80/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T T13006C C14408T C23277T A23403G G25563T C25688T

EPI_ISL_471547
 2020-03-11 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_2554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3955T C14408T A23403G G25534T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475838
 2020-03-11 2020-06-25
 Austria hCoV-19/Austria/CeMM0403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475910
 2020-03-11 2020-06-25
 Austria hCoV-19/Austria/CeMM0559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15380K T16993Y A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475919
 2020-03-11 2020-06-25
 Austria hCoV-19/Austria/CeMM0570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G443A T1570C G11083T G14656T C14805T T17247C T21739C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475920
 2020-03-11 2020-06-25
 Austria hCoV-19/Austria/CeMM0571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G20709T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476067
 2020-03-11 2020-06-25
 Czech Republic hCoV-19/Czech Republic/NRL_4033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28512A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476785
 2020-03-11 2020-06-25
 United States hCoV-19/USA/CA-CZB-1768/2020
 ATTAAAGGTTT1- G11083T C14805T T15922C T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_479662 MT678839
 2020-03-11 2020-06-30
 South Korea SARS-CoV-2/human/KOR/CNUHV03/2020
 T120C A963G C2536T A3553G G3815A T4120C T4402C A5019G G5062T A6030G A6391G A6505G T7198C T7380C T7576C G7684A T8296C T8439C T8523C C8782T G8876A T9179C A9218G G11083T TGAT11275AATC T13147C A13315G T14086C A14681G T15728C T17772C A17809G T18613C C21377G T21432C T21439C A21675G T21819C C21846T A21849G A22013G T22117G T24073C T24565C T27534C G27593A T27956C T28144C T28516C A29355T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_479853
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C8626T C14408T C18877T A23403G G25563T C26735T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479854
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479872
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A G28857T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479905
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T G16381A T17877C T28144C G28878A G29742A GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_479906
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479907
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_479922
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C140T A2160G T4402C G5062T C8782T G11083T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479931
 2020-03-11 2020-07-01
 Japan hCoV-19/Japan/PG-0237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C4784T C8782T C9979T G16381A T17877C T28144C G28878A G29742A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_481283
 2020-03-11 2020-07-02
 United States hCoV-19/USA/NY-NYU-VC-003/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_482483
 2020-03-11 2020-07-03
 Canada hCoV-19/Canada/MB_79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482990
 2020-03-11 2020-07-06
 United States hCoV-19/USA/MN-MDH-1269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_482995
 2020-03-11 2020-07-06
 United States hCoV-19/USA/MN-MDH-1274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C11776T C14408T A23403G GGG28881AAC T29855- GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483542
 2020-03-11 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G4144T G11083T C11109T C19862T T27384C T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483543
 2020-03-11 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T T28688C G29543T G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_485831 MT739437 MT913050
 2020-03-11 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C2416T C3037T C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_485833 MT739439 MT913052
 2020-03-11 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0531/2020
 ATTA1- C241T C2416T C3037T C10626T C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_485834 MT739440 MT913053
 2020-03-11 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485845 MT739451 MT913064
 2020-03-11 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_487275 MT747438
 2020-03-11 2020-07-13
 Belgium SARS-CoV-2/Felis catus/BEL/BE-MG-0320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488190
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F76F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21660T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488199
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F79C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G199T C241T A1461G C2334T C3037T C5730T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488201
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488287
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3189T C14408T A23403G GGG28881AAC G29540T G29736A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488356
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488434
 2020-03-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F77E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21660T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489838
 2020-03-11 2020-07-14
 Peru hCoV-19/Peru/Peru006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T T15282C A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_489988
 2020-03-11 2020-07-14
 Peru hCoV-19/Peru/INS-011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_490209
 2020-03-11 2020-07-15
 Peru hCoV-19/Peru/INS-015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T A1087G G1598A C3037T T5124G C12970T C14408T A20268G G21220T A23403G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491440
 2020-03-11 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T C21638T A23403G G26143A TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_491446
 2020-03-11 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T C17104T C21638T A23403G G26143A ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_492665
 2020-03-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C8655T G29000T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492735
 2020-03-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G659S C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492984
 2020-03-11 2020-07-20
 Italy hCoV-19/Italy/NegrarVR_5/2020
 A1- A187G C241T C3037T C14408T C14889T A23403G T29867A C29870A

EPI_ISL_498010
 2020-03-11 2020-07-26
 South Korea hCoV-19/Korea/KCDC2109/2020
 ATTAAAGGTT1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498013
 2020-03-11 2020-07-26
 South Korea hCoV-19/Korea/KCDC2112/2020
 ATTAAAGG1- A2196C G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498168
 2020-03-11 2020-07-27
 Colombia hCoV-19/Colombia/T1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G578A C17747T A17858G C18060T A24694T T28144C A29365G A29547G G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498169
 2020-03-11 2020-07-27
 Colombia hCoV-19/Colombia/T8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G578A C18060T A24694T T28144C A29365G A29547G G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498170
 2020-03-11 2020-07-27
 Colombia hCoV-19/Colombia/T12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G578A C8782T C17747T A17858G C18060T A24694T G25785T T28144C A29365G A29547G G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500038
 2020-03-11 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC C29870A

EPI_ISL_500044
 2020-03-11 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A47EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25513Y GGG28881AAC

EPI_ISL_500058
 2020-03-11 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A498B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350T A28254G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500410
 2020-03-11 2020-07-28
 Spain hCoV-19/Spain/COV005976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_500411
 2020-03-11 2020-07-28
 Spain hCoV-19/Spain/COV005977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_500413
 2020-03-11 2020-07-28
 Spain hCoV-19/Spain/COV005979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G6337T T13006C C14408T G17302T A23403G G25563T C25688T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_500449
 2020-03-11 2020-07-28
 Spain hCoV-19/Spain/COV006019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G T28600C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_500634
 2020-03-11 2020-07-29
 Australia hCoV-19/Australia/NSW2156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500635
 2020-03-11 2020-07-29
 Australia hCoV-19/Australia/NSW2157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C9165T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_508766 MT834608
 2020-03-11 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0562/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508767 MT834609
 2020-03-11 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0563/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508872
 2020-03-11 2020-08-04
 France hCoV-19/France/ARA07639/2020
 ATTAAA1- C241T C337T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508910
 2020-03-11 2020-08-04
 France hCoV-19/France/NA01745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508943
 2020-03-11 2020-08-04
 France hCoV-19/France/ARA07722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T G28423A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508944
 2020-03-11 2020-08-04
 France hCoV-19/France/ARA07731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- T514C ATG1605- C17410T C28610G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508945
 2020-03-11 2020-08-04
 France hCoV-19/France/ARA0779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_511892
 2020-03-11 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_0554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29881G A29883T A29885T

EPI_ISL_515294
 2020-03-11 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0005/2020
 ATTAAA1- C8782T C17747T A17858G C18060T A25385G T28144C

EPI_ISL_515974
 2020-03-11 2020-08-20
 Denmark hCoV-19/Denmark/ALAB-1000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516831
 2020-03-11 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FCEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516836
 2020-03-11 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FC63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9711T C14408T A23403G A26530G G28739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523810
 2020-03-11 2020-08-26
 Peru hCoV-19/Peru/LAL-INS-070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C8782T C26088T T28144C ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_523934
 2020-03-11 2020-08-27
 Germany hCoV-19/Germany/NW-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C6317T C9891Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523968
 2020-03-11 2020-08-27
 Moldova hCoV-19/Moldova/ChVir7776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_525597
 2020-03-11 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-12824-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525599
 2020-03-11 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13245-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A1515G C9223T G11083T C14805T T17247C A17799G C23987T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_525600
 2020-03-11 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13260-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525601
 2020-03-11 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13391-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A8882G C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528001
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G16245A C21057T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528002
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C10755T C14408T C15324T A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528003
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528004
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_528005
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528006
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528007
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528008
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528009
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G3251T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528010
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3251T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528011
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528012
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C15810T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528013
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528015
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42186686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528017
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_528023
 2020-03-11 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42187456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_534933
 2020-03-11 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4153/2020
 C241T C3037T C14408T C22009T A23403G C27046T C27595T GGG28881AAC

EPI_ISL_534981
 2020-03-11 2020-09-14
 United Kingdom hCoV-19/England/OXON-B48C7/2020
 G11083T C14805T G26031T G26144T G28842T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_535728
 2020-03-11 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00214517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535729
 2020-03-11 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00214546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C799T C1427T C8782T C17747T A17858G C18060T A24694T G25543A T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535823
 2020-03-11 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00224795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536436
 2020-03-11 2020-09-16
 Singapore hCoV-19/Singapore/895/2020
 A1- C4320T A29746R AAAAAAAAAAAA29892-

EPI_ISL_536553
 2020-03-11 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-160/2020
 ATTA1- C241T A1087G G1598A C3037T T5124G C12970T C14408T A20268G G21220T A23403G G29734C

EPI_ISL_537414
 2020-03-11 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538266 MW010247
 2020-03-11 2020-09-16
 United States SARS-CoV-2/human/USA/MD-MDH-0182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T GTTATG515- C3037T C14408T C18877T A23403G G25563T G29864A T29867- C29870G

EPI_ISL_539566
 2020-03-11 2020-09-18
 Spain hCoV-19/Spain/GA-ISCIII-202077/2020
 A1- A6T C2143T GGCTATTGATGGTGGTGTCACTCGTGACATAGCATCTACAGATAC8695- CCAGCGTGGTGGTAGTTATACTAATGACAAAGCTTGCCCATTGATTGCTGCAGTCATAACAAGAGAAGTGGGTTTTGTCGTGCCTGGTTTGCCTGGCACGATATTACGCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCAGTTGGTAACATCTGT8782- T9477A C14805T G25785T G25979T T28144C C28657T C28863T A29716G A29767G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_541138
 2020-03-11 2020-09-22
 Czech Republic hCoV-19/Czech Republic/NRL-1753/20
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A610G ATG1605- G18985T C19366T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_547480
 2020-03-11 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547481
 2020-03-11 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548245
 2020-03-11 2020-09-25
 Sweden hCoV-19/Sweden/20-08157/2020
 A610G ATG1605- G18985T C19366T G27915C

EPI_ISL_548982
 2020-03-11 2020-09-28
 Singapore hCoV-19/Singapore/974/2020
 ATTA1- A1515G C9223T G11083T C14805T T17247C A21625G G26144T AAAAAAAAAAAA29892-

EPI_ISL_548987
 2020-03-11 2020-09-28
 Singapore hCoV-19/Singapore/979/2020
 ATTAAAGGTTT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T A29700G AAAAAAAAAAAA29892-

MT192765
 2020-03-11 2020-03-16
 United States SARS-CoV-2/human/USA/PC00101P/2020
 ATTAAAG1- C241T C3037T C14408T C18814T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT256924
 2020-03-11 2020-03-27
 Colombia SARS-CoV-2/human/COL/79256_Antioquia/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17470T C26088T T28144C G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT415321
 2020-03-11 2020-04-30
 India SARS-CoV-2/human/IND/GMCKN318/2020
 C241T C3037T C14408T A23403G

MT444148
 2020-03-11 2020-05-07
 United States SARS-CoV-2/human/USA/CA-NHRC-01/2020
 ATTAAAGGTTTAT1- C8782T C17747T A17858G C18060T A24694T T28144C

MT459852
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/136_32338/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G24236T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459853
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/137_32340/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A6646G C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459854
 2020-03-11 2020-05-11
 Greece SARS-CoV-2/human/GRC/138_32343/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT509472
 2020-03-11 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509475
 2020-03-11 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT671822
 2020-03-11 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1768/2020
 ATTAAAGGTTT1- G11083T C14805T T15922C T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT703677
 2020-03-11 2020-07-02
 United States SARS-CoV-2/human/USA/NYU-VC-003/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

MT810561
 2020-03-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0429-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT956914
 2020-03-11 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-72114039/2020
 C241T G425A GTTATG515- G787T C3037T C14408T A20268G A23403G C29250T

MW014808
 2020-03-11 2020-09-17
 United States SARS-CoV-2/human/USA/COVID20-1196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C18877T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MW030220
 2020-03-11 2020-09-22
 Peru SARS-CoV-2/human/PER/covper084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T A1087G G1598A C3037T T5124G C12970T C14408T A20268G G21220T A23403G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013240
 2020-03-11 2020-06-01
 China hCoV-19/Guangzhou/ID132/2020
 T3A C241T C3037T T12436A C14408T C15324T A23403G ATT29163- T29470A G29868A

EPI_ISL_415475 LR878077
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C6255T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415485 LR878095
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1457T C1594T C3037T C11109T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415524 LR878096
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415525 LR878090
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordHolland_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T A6825C C13358T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415527 LR878079
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/Utrecht_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G11083T A12820G C13119T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415535 LR878111
 2020-03-12 2020-03-17
 Netherlands hCoV-19/Netherlands/ZuidHolland_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T T658C C3037T C14408T A23403G A24862G C28629T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415655
 2020-03-12 2020-03-19
 United Kingdom hCoV-19/Wales/PHW27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16393T G22583A A23403G G27366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415657
 2020-03-12 2020-03-19
 United Kingdom hCoV-19/Wales/PHW37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415920
 2020-03-12 2020-03-19
 United Kingdom hCoV-19/Wales/PHW32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C25669T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416635 MT252761
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C8782T C17747T A17858G C18060T T27384C T28144C G29862A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416636 MT252762
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW98/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C17747T A17858G C18060T A27237T T28144C A29869D -29904ANANANANANA

EPI_ISL_416637 MT252763
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17747T A17858G C18060T T28144C -29904ANANAC

EPI_ISL_416638 MT252764
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31W AACC34HTTH C8782T C17747T A17858G C18060T T28144C -29904AAATAT

EPI_ISL_416661 MT252741
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW123/2020
 ATTAAAGGTTTATACCTTCCCAG1- GT24AA AACC34TTTA C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAA29898-

EPI_ISL_416662 MT252742
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW124/2020
 ATTAAAG1- A34H C8782T C17747T A17858G C18060T T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_416663 MT252743
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C8782T C17747T A17858G C18060T T28144C G29862A A29903-

EPI_ISL_416664 MT252744
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW126/2020
 ATT1- T10A C8782T C11704T C17747T A17858G C18060T C19961T T28144C AAA29901-

EPI_ISL_416665 MT252745
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW127/2020
 ATTAAAGGTTT1- C1238T C8782T C17747T A17858G C18060T T28144C T28924C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416666 MT252746
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW128/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_416667 MT252747
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW129/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T T15927G C17747T A17858G C18060T C18401T C26936T T28144C -29904ACANA

EPI_ISL_416671 MT252750
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- C241T C3037T C14408T G16741T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416677 MT252755
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C8782T T15927G C17747T A17858G C18060T G20167T C26936T T28144C C29580T -29904CANANAHA

EPI_ISL_416693 MT252726
 2020-03-12 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G24348T G25563T G29553A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_417346 MT246454
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW197/2020
 ATTAAAGGT1- C1469T G11083T C14805T T17247C G26144T G29254T AA29902-

EPI_ISL_417347 MT246455
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- T47Y G332T C5784T C8782T C17747T A17858G C18060T C20823T T28144C A29903-

EPI_ISL_417349 MT246457
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C140T TAG4879- C8782T C12213T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_417351 MT246459
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW202/2020
 T2C AAGGTT5- C8782T G11161A C17474T C17747T A17858G C18060T G18149T T28144C A29865G A29869H -29904ANANANANAAA

EPI_ISL_417352 MT246460
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW203/2020
 TTA2GCT C241T C1059T C3037T C14408T A23403G G25563T -29904ANANAAANAAAAA

EPI_ISL_417364 MT246472
 2020-03-12 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C8782T T11320C C17747T A17858G C18060T G25494T T28144C AAAAAAAA29896-

EPI_ISL_417404
 2020-03-12 2020-03-25
 Australia hCoV-19/Australia/NSW50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C313T C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417452 MT251974
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/CT-UW238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C3037T C14408T C18877T A23403G G25563T G29864V TG29867AA

EPI_ISL_417469 MT911538
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN31-MDH31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6078Y G13489R C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_417470 MT911539
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN32-MDH32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13019T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417471 MT911540
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN34-MDH34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G -29820T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417472 MT911541
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN35-MDH35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839T

EPI_ISL_417474 MT911543
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN38-MDH38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3738Y C14408T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417475
 2020-03-12 2020-03-26
 United States hCoV-19/USA/MN39-MDH39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A4912C C14805T C17010A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417476 MT911544
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN40-MDH40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417477 MT911545
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN41-MDH41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C8782T C14322T C17747T A17858G C18060Y A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417479 MT911547
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN43-MDH43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037Y C14408T A23403R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417480 MT911548
 2020-03-12 2020-03-26
 United States SARS-CoV-2/human/USA/MN44-MDH44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4633T C8782T T15927G C17747T A17858G C18060T T21158C C26936T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417696
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/135/2020
 C5142T G5880A G11083T C14805T T17247C G26144T

EPI_ISL_417713
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/130/2020
 C241T C3037T C14408T T22324C A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417714
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/129/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417720
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/138/2020
 C8782T T9445C C17747T A17858G C18060T A24694T T28144C

EPI_ISL_417727
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/127/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_417735
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/134/2020
 C241T C1059T A2786G C3037T C14408T G20419T A23403G G25563T

EPI_ISL_417771
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/131/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417784
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/124/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417785
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/126/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417786
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/128/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417787
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/132/2020
 C241T C1059T C3037T C14408T A23403G G25563T T27407C

EPI_ISL_417788
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/133/2020
 C241T C3037T C14408T C15324T C21575T A23403G

EPI_ISL_417789
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/136/2020
 C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417790
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/139/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417791
 2020-03-12 2020-03-27
 Iceland hCoV-19/Iceland/140/2020
 C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417954
 2020-03-12 2020-03-27
 Spain hCoV-19/Spain/Madrid_H3_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C19017T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417957
 2020-03-12 2020-03-27
 Spain hCoV-19/Spain/Madrid_H7_36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11704T C14408T A20268G A23403G ACCACACAAGGCAGATGGGCTATATAAACGTTTTC29544- G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417961
 2020-03-12 2020-03-27
 Spain hCoV-19/Spain/Madrid_H9_38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T9477A C14805T G25979T C26681T T28144C C28657T C28863T C29835- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417963
 2020-03-12 2020-03-27
 Spain hCoV-19/Spain/Madrid_H10_39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_417967
 2020-03-12 2020-03-27
 Spain hCoV-19/Spain/Madrid_H11_40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C17639T A20268G A23403G C28638T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_418004
 2020-03-12 2020-03-28
 Portugal hCoV-19/Portugal/PT0019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25537T C26150T G27798T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418005
 2020-03-12 2020-03-28
 Portugal hCoV-19/Portugal/PT0020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G11083T C14805T T17247C G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418182
 2020-03-12 2020-03-28
 Spain hCoV-19/Spain/Madrid_H8_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11704T C14408T A20268G A23403G ACCACACAAGGCAGATGGGCTATATAAACGTTTTC29544- G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_418213
 2020-03-12 2020-03-29
 Senegal hCoV-19/Senegal/094/2020
 C241T C3037T C14408T A23403G G27261T C29421T

EPI_ISL_418227
 2020-03-12 2020-03-29
 France hCoV-19/France/HF2393/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C335T C2416T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_418228
 2020-03-12 2020-03-29
 France hCoV-19/France/HF2405/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C9803T C14408T C14645T A23403G G25563T C27434T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_418229
 2020-03-12 2020-03-29
 France hCoV-19/France/IDF2410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_418326
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL7972/2020
 A1- G1397A A2832G G11083T T28688C G29742T AGTGTAC29756- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418329
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL5694/2020
 A1- G1440A G2891A C7011T C11074T G11083T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418336
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL5705/2020
 A1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418337
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL3802/2020
 A1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418338
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL5710/2020
 A1- T8767C C8782T T10771C C12076T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418341
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL0142/2020
 A1- C8782T C17747T A17858G C18060T C18568T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418351
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL3575/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418356
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL6980/2020
 A1- C241T C1059T C3037T C9863T C14408T C17339T A22976G A23403G G25563T G28368A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418358
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL5756/2020
 A1- C241T C1059T C3037T C11916T C14408T C18998T C22444T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418359
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL5757/2020
 A1- C241T C1059T C3037T C11916T C14408T C18998T C22444T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418361
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL1095/2020
 A1- C241T C1059T C3037T C14408T A23403G G25217T G25563T A29866T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418367
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL7513/2020
 A1- C203T C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418368
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL3458/2020
 A1- A163G C241T C3037T C14408T A16422C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418372
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL8458/2020
 A1- C241T C3037T C3373A T13532C C14408T A23403G G25906T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418375
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL0141/2020
 A1- C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418376
 2020-03-12 2020-03-12
 Canada hCoV-19/Canada/ON_PHL3459/2020
 A1- C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418811
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/NB_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418812
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/MB_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418838
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/BC_6404889/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_418843
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/BC_7277381/2020
 C8782T A17858G C18060T T28144C

EPI_ISL_418846
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/BC_7553799/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_418847
 2020-03-12 2020-03-31
 Canada hCoV-19/Canada/BC_8150537/2020
 C8782T C10789T C17747T A17858G C18060T C20132T T28144C

EPI_ISL_419302 LC547524
 2020-03-12 2020-04-02
 Japan hCoV-19/Japan/P4-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_419303 LC547525
 2020-03-12 2020-04-02
 Japan hCoV-19/Japan/P4-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419309 LC547531
 2020-03-12 2020-04-02
 Japan hCoV-19/Japan/P5-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_419313 MT262993
 2020-03-12 2020-03-30
 Pakistan SARS-Cov-2/human/PAK/Manga1/2020
 TTTCTATTGGTTCTT9721- TTGTATCTCGATGCTTATAAC19516- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419563
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS0156959/2020
 C241T C3037T C14408T C15324T C16887T A23403G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_419570
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS1234709/2020
 C241T C3037T C14408T C15324T C16887T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_419580
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS2907333/2020
 C241T C3037T C14408T C15324T C16887T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419595
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS7753431/2020
 C241T C1059T C3037T C14408T A23403G G25563T T27299C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419596
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS7866283/2020
 C241T G520K C3037T C14408T T19839C G22180A A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_419602
 2020-03-12 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS9324837/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_419708 MT339043
 2020-03-12 2020-04-03
 United States SARS-CoV-2/human/USA/VA-DCLS-0014/2020
 ATT1- C241T C1059T C3037T C3253T C14408T A23403G G25563T TGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTC27702- C29870M

EPI_ISL_419710 MT322406
 2020-03-12 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0016/2020
 ATTAAAGGTTTATACCT1- C241T C2416T C3037T C10626T C10712T C14408T C22444T A23403G G25563T

EPI_ISL_419759 MT450962
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC47/2020
 ATTAAAGGTTTATACC1- A2480G C2558T T6971C G6975T G6977A C9170T G11083T C14805T G23755C G26144T

EPI_ISL_419762 MT450963
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C21301M A23403G G25563T

EPI_ISL_419764 MT450964
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC49/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T C18060T A23403G G25563T

EPI_ISL_419766 MT450965
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419768 MT450967
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T11638C C13047T C14408T A23403G GGG28881AAC C29708T

EPI_ISL_419769 MT450968
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419770 MT450969
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC54/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_419776 MT450970
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C14805T T17247C C18457T G26144T

EPI_ISL_419777 MT450971
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T A25050G T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419779 MT450972
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A1646G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_419784 MT450973
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C1076T G1397A G11083T T28688C G29742T

EPI_ISL_419826 MT450966
 2020-03-12 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC51/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C C29085T A29700G GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_420039
 2020-03-12 2020-04-04
 France hCoV-19/France/GE2720/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420040
 2020-03-12 2020-04-04
 France hCoV-19/France/GE2722/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_420111
 2020-03-12 2020-04-05
 Singapore hCoV-19/Singapore/34/2020
 ATTAAAGGTTTA1- C9502Y A19116R C21711T C24477Y T26232Y TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_420126
 2020-03-12 2020-04-05
 Spain hCoV-19/Spain/Valencia42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420127
 2020-03-12 2020-04-05
 Spain hCoV-19/Spain/Valencia43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420128
 2020-03-12 2020-04-05
 Spain hCoV-19/Spain/Valencia44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420292
 2020-03-12 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0655/2020
 A2480G C2558T G11083T C14805T C15755T G26144T

EPI_ISL_420901
 2020-03-12 2020-04-07
 Germany hCoV-19/Germany/BAV-V2010840/2020
 C241T C3037T C12756T C14408T A23403G C28121T

EPI_ISL_421501
 2020-03-12 2020-04-08
 France hCoV-19/France/IDF2359/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421502
 2020-03-12 2020-04-08
 France hCoV-19/France/IDF2412/2020
 C241T C1059T C3037T G11083T C14408T C17822T C21622A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421503
 2020-03-12 2020-04-08
 France hCoV-19/France/IDF2414/2020
 C241T C1059T C3037T G11083T T14394C C14408T G16852T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421669
 2020-03-12 2020-04-09
 India hCoV-19/India/1616/2020
 ATTAAAGGTTTAT1- C884T G1397A G8653T G11083T A19182G G19735T T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_421670
 2020-03-12 2020-04-09
 India hCoV-19/India/1617/2020
 A4G C884T G1397A G6220A G8653T T10667C G11083T C22792A CA28253AC T28688C G28913T G29742T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_421671
 2020-03-12 2020-04-09
 India hCoV-19/India/1621/2020
 ATTAAAGGTTTAT1- C835T C884T G1397A G8653T G11083T G23426A T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_421672
 2020-03-12 2020-04-09
 India hCoV-19/India/1644/2020
 ATTAAAGGTTTATAC1- C884T G1397A C8043T G8653T G11083T A26226G T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422877 LR877746
 2020-03-12 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G29449T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424363
 2020-03-12 2020-04-13
 India hCoV-19/India/1652/2020
 ATTAAAGGTTTATACCTTCCCA1- C884T G1397A T8329A T8336A T8347A G8653T G11083T A26226G T28688C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424673
 2020-03-12 2020-04-13
 Mexico hCoV-19/Mexico/CDMX-InDRE_06/2020
 C936T C8782T G11083T C17747T A17858G C18060T A24694T T28144C G28812T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_425468
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF05/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425470
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF23/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425662
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425674
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425692
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425699
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G18090T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425720
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T G18651T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425724
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T G18651T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425749
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27163T G28329T T29360C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425756
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23086T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425757
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425763
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1483A C3037T C14408T A23403G G24751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425785
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_425788
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18443K A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425790
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425813
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C7869T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425815
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_425828
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB022/2020
 C241T C3037T C14408T A23403G

EPI_ISL_425829
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB023/2020
 C14408T

EPI_ISL_425830
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB024/2020
 C241T C3037T C14408T A23403G

EPI_ISL_425843
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB037/2020
 C14805T C19484T G28842T

EPI_ISL_425848
 2020-03-12 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB044/2020
 

EPI_ISL_426322
 2020-03-12 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-14726-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T A10024G G11083T T14706C C14805T C17010A C21575T G26144T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426361
 2020-03-12 2020-04-16
 Mexico hCoV-19/Mexico/CDMX-INCMNSZ_01/2020
 C8782T C17747T A17858G C18060T C21707T C23422T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_426363
 2020-03-12 2020-04-16
 Mexico hCoV-19/Mexico/CDMX-INCMNSZ_03/2020
 C8782T C17747T A17858G C18060T C21707T C23422T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426364
 2020-03-12 2020-04-16
 Mexico hCoV-19/Mexico/CDMX-INCMNSZ_04/2020
 C8782T C17747T A17858G C18060T C21707T C23422T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426518
 2020-03-12 2020-04-17
 United States hCoV-19/USA/AZ-TG268915/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426531
 2020-03-12 2020-04-17
 United States hCoV-19/USA/AZ-TG269883/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427526
 2020-03-12 2020-04-19
 United States hCoV-19/USA/NY-WCMP2C03P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871MG

EPI_ISL_427527
 2020-03-12 2020-04-19
 United States hCoV-19/USA/NY-WCMP2D02P/2020
 C8782T C17747T A17858G C18060T A21404G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872G

EPI_ISL_427528
 2020-03-12 2020-04-19
 United States hCoV-19/USA/NY-WCMP2D04P/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872G

EPI_ISL_427529
 2020-03-12 2020-04-19
 United States hCoV-19/USA/NY-WCMP2H03P/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427530
 2020-03-12 2020-04-19
 United States hCoV-19/USA/NY-WCMP3E02P/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_428692
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_29/2020
 ATTAAAGGTTTATACCTTC1- C8782T T9477A C14805T A22151G G25979T C28087T T28144C C28657T C28863T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861A

EPI_ISL_428693
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_30/2020
 AT1TG A4T C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_428694
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_31/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T A6248C C14408T A20268G A23403G C25413T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_428695
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_32/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12068T C14408T C16952T A20268G A23403G T29848A A29850T A29860T GAGA29862TTAG GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_428696
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_33/2020
 ATTAAAGGTTTATA1- T25G C241T C3037T C14408T A20268G A23403G -29826T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_428697
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_34/2020
 ATTAAAGGTTT1- C3373T G11083T G26144T G28209C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_428698
 2020-03-12 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_35/2020
 ATTAAAGGTTTATACCTT1- A5838C C8782T G18186T C20611T C26088T T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_429123
 2020-03-12 2020-04-23
 Sweden hCoV-19/Sweden/20-08169/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429124
 2020-03-12 2020-04-23
 Sweden hCoV-19/Sweden/20-08170/2020
 C241T C3037T C14408T A21137G A23403G

EPI_ISL_429125
 2020-03-12 2020-04-23
 Sweden hCoV-19/Sweden/20-08173/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_429160
 2020-03-12 2020-04-23
 Sweden hCoV-19/Sweden/20-50312/2020
 A187G C241T C3037T C14408T C14741T A23403G

EPI_ISL_429161
 2020-03-12 2020-04-23
 Sweden hCoV-19/Sweden/20-50315/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_429256
 2020-03-12 2020-04-23
 Spain hCoV-19/Spain/Vircell001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A6248C C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_429289
 2020-03-12 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH31/2020
 C241T C1059T C1302T C3037T C14408T C14585T A23403G G25563T

EPI_ISL_429525
 2020-03-12 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI426/2020
 C241T C1059T C3037T C14408T G20275T A23403G G25563T

EPI_ISL_429811
 2020-03-12 2020-04-24
 Canada hCoV-19/Canada/NB_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430114 MT627613
 2020-03-12 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S260/2020
 C8782T C17747T A17858G C18060T T27222C T27384C T28144C

EPI_ISL_430127 MT627636
 2020-03-12 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S273/2020
 C1419T C8782T G14126A C17747T A17858G C18060T T28144C

EPI_ISL_430175 MT632562
 2020-03-12 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S138/2020
 C8782T C17747T A17858G C18060T A24667G T28144C

EPI_ISL_430176 MT632595
 2020-03-12 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S139/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_430177 MT632598
 2020-03-12 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S140/2020
 C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_430854
 2020-03-12 2020-04-28
 Sweden hCoV-19/Sweden/20-08171/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_430855
 2020-03-12 2020-04-28
 Sweden hCoV-19/Sweden/20-08172/2020
 C241T C1059T C3037T C14408T G20419T A23403G G25563T C26895T

EPI_ISL_430877 MT412248
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C8782T C17747T A17858G C18060T T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_430880 MT412247
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-530/2020
 A1- T3G A31T C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_430883 MT412250
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-542/2020
 ATTAAAGGTTT1- TA13AG C16A T18G AG22GA C36Y C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430884 MT412249
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-543/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_430885 MT412251
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-546/2020
 ATTAA1- A31T C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_430889 MT412244
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31W AC35HT C8782T C17747T A17858G C18060T G22984A T27384C T28144C -29904AAAAAAAAAA

EPI_ISL_430890 MT412243
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-581/2020
 ATTAAAGGTTT1- A31W C36T C8782T C17747T A17858G C18060T T28144C A28910T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_430891 MT412236
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-586/2020
 ATTAAAGGTTTATAC1- CCCAGGTAACAAACCAA19- C36T C241T T833C C1059T C3037T G11222T C14408T C14676T A23403G G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430892 MT412238
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-596/2020
 ATTAAAGGTTTATACCTTCCCA1- C36T C8782T C17747T A17858G C18060T C18788T C21306T A27525G T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430893 MT412240
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-600/2020
 ATTAAAGGTTTATA1- A34W C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430894 MT412237
 2020-03-12 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-602/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_434467
 2020-03-12 2020-04-29
 Greece hCoV-19/Greece/141/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C16073T A23403G GGG28881AAC C28887T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434472
 2020-03-12 2020-04-29
 Greece hCoV-19/Greece/139/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434485
 2020-03-12 2020-04-29
 Greece hCoV-19/Greece/150/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C2508T G9190T G11083T C14805T G15919T T17247C G26144T G26172A TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434646
 2020-03-12 2020-04-30
 Sweden hCoV-19/Sweden/20-05653/2020
 C241T C1059T C1093T C1302T C2197T C3037T C14408T A23403G G25563T

EPI_ISL_435060
 2020-03-12 2020-05-02
 India hCoV-19/India/NCDC-01257/2020
 C241T C1601A C2040T C3037T T6552K T8022K T12339Y C14408T G16917K C17885Y C18377M T18690K A20255R T22515Y A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435119
 2020-03-12 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0/2020
 C241T C1059T C3037T C14408T C21781T A23403G G25563T G26775T C29415T

EPI_ISL_435123
 2020-03-12 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0484/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435130
 2020-03-12 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L2185/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435140
 2020-03-12 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L7356/2020
 C241T C3037T G4201T C14408T A23403G C26527T

EPI_ISL_435141
 2020-03-12 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L9440/2020
 C241T C1997T C3037T C8290T C14408T C17678T A23403G A24110T

EPI_ISL_435639
 2020-03-12 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC160/2020
 G29711T

EPI_ISL_435641
 2020-03-12 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC162/2020
 C26032T G29711T

EPI_ISL_435643
 2020-03-12 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC164/2020
 C241T C3037T C13517T C14408T A23403G C25350T

EPI_ISL_436210
 2020-03-12 2020-05-06
 Spain hCoV-19/Spain/Valencia115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436211
 2020-03-12 2020-05-06
 Spain hCoV-19/Spain/Valencia116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A A10323G C14805T G24928T G25979T T28144C C28657T C28863T G29742A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436295
 2020-03-12 2020-05-06
 Spain hCoV-19/Spain/Valencia200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G C29144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436808 MT439237
 2020-03-12 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20179/2020
 ATTAAAGGTT1- C241T C1059T C3037T A5011M T9046C C14408T T19584Y A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_437211
 2020-03-12 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0010/2020
 C241T C3037T C12756T C14408T A23403G C28121T

EPI_ISL_437218
 2020-03-12 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0017/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437223
 2020-03-12 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0023/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437249
 2020-03-12 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0050/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437250
 2020-03-12 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0051/2020
 C241T C3037T A7881G C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_437609 MT447169
 2020-03-12 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI204514-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_437610 MT447168
 2020-03-12 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI204512-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G90T C241T C3037T C14408T G20398A C21156T A23403G G24056T A26530G CGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29733-

EPI_ISL_437876 MT459870
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/202_32984/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC C28887T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437877 MT459872
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/204_33112/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2434T C3037T C14408T A23403G C25350T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437921
 2020-03-12 2020-05-12
 Austria hCoV-19/Austria/CeMM0032/2020
 C241T C1059T C3037T C14117T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437922
 2020-03-12 2020-05-12
 Austria hCoV-19/Austria/CeMM0033/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437940
 2020-03-12 2020-05-12
 Austria hCoV-19/Austria/CeMM0068/2020
 C241T C3037T G4255T C14408T A23403G A26530R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437968
 2020-03-12 2020-05-12
 Austria hCoV-19/Austria/CeMM0109/2020
 C241T C3037T C14408T C15324T A23403G A23558G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437969
 2020-03-12 2020-05-12
 Austria hCoV-19/Austria/CeMM0111/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29540T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_443198
 2020-03-12 2020-05-12
 Singapore hCoV-19/Singapore/106/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_444519 EPI_ISL_454691
 2020-03-12 2020-05-28
 United States hCoV-19/USA/NY-QDX-01-2/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_445109
 2020-03-12 2020-05-15
 United States hCoV-19/USA/CA-SR0118/2020
 C884T G1397A G8653T G11083T C20628T A25980C T28688C G29742T

EPI_ISL_445264
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Santiago_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC C29109T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834C

EPI_ISL_445266
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Antofagasta_1/2020
 ATTA1GAAT C8090T C8782T C13115T C13665T A19667G T25541C C26088T A27797R T28144C GGAGAAT29861- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445267
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Antofagasta_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C13115T C13665T T25541C C26088T T28144C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445331
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Chillan_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445333
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Concepcion_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- A34G C241T C3037T C12546T C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838T

EPI_ISL_445357
 2020-03-12 2020-05-15
 Chile hCoV-19/Chile/Santiago_61/2020
 TT2CA -AG5CCA -14GATCCTTTGCA -18GAATTAGACTCA C241T G1319A C3037T C8389T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447636 MT459871
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/203_33026/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450086
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450090
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450094
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450095
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450098
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C25688A GCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29773-

EPI_ISL_450102
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C2676T T6329C C8782T A22606T T28144C G28878A G29742A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450106
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450107
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G4255T C14408T T16456G C20051T A23403G A26530G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450109
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C506T C3037T C14408T A20268G A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450118
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450121
 2020-03-12 2020-05-20
 United States hCoV-19/USA/NY-PV09446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450834
 2020-03-12 2020-05-22
 Sweden hCoV-19/Sweden/20-08168/2020
 C241T C1059T C3037T C14408T G17721T C21952T A23403G G25563T C27294T

EPI_ISL_451669 LR824229
 2020-03-12 2020-05-25
 Switzerland 100076
 C241T C3037T A5958G C14408T C15324T C22413Y A23403G

EPI_ISL_451688 LR824243
 2020-03-12 2020-05-25
 Switzerland 100096
 C241T C1059T C3037T C14408T G15380K A19298W T22516W A23403G G25563T

EPI_ISL_452025
 2020-03-12 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-148/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452331
 2020-03-12 2020-05-27
 China hCoV-19/Beijing/DT-travelCA01/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452333
 2020-03-12 2020-05-27
 China hCoV-19/Beijing/DT-travelIRI01/2020
 C16A C884T G1397A T8022G G8653T T20891G T28688C G29742T

EPI_ISL_452342
 2020-03-12 2020-05-27
 China hCoV-19/Beijing/DT-travelNO01/2020
 A23403G AG24389CC G28881A

EPI_ISL_452344
 2020-03-12 2020-05-27
 China hCoV-19/Beijing/DT-travelES02/2020
 C203T T8395A C14805T A22151G G25979T T28144C C28657T C28863T

EPI_ISL_452531
 2020-03-12 2020-05-27
 Spain hCoV-19/Spain/COV001370/2020
 C241T C3037T C4058T A7807R C14408T A20268G A23403G G28881T G29734C

EPI_ISL_452535
 2020-03-12 2020-05-27
 Spain hCoV-19/Spain/COV001366/2020
 C2040T C8782T G11083T C26088T T28144C

EPI_ISL_454006
 2020-03-12 2020-05-28
 Portugal hCoV-19/Portugal/PT0290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454009
 2020-03-12 2020-05-28
 Portugal hCoV-19/Portugal/PT0293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G G24077T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454787
 2020-03-12 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10038/2020
 ATTAAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T A28305G GGG28881AAC AAAAAA29898-

EPI_ISL_454944
 2020-03-12 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-183/2020
 A9243G G11083T

EPI_ISL_454983
 2020-03-12 2020-05-29
 China hCoV-19/Wuhan/HB-WH6-246/2020
 C15981T T26729C G28077C T28144C

EPI_ISL_455122
 2020-03-12 2020-05-29
 Netherlands hCoV-19/Netherlands/Gelderland_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1594T C3037T C11109T G14241T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455123
 2020-03-12 2020-05-29
 Netherlands hCoV-19/Netherlands/Gelderland_14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C12073T C14408T C16049T A23403G G25563T A27440C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455292
 2020-03-12 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5310T C14408T G18907T G20940A A23403G C24382T C27046T GGG28881AAC G29751C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455293
 2020-03-12 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T16515C A23403G G27074A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455380
 2020-03-12 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-184/2020
 TG14865- C22482T

EPI_ISL_455436
 2020-03-12 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_12/2020
 ATTAAAGGTTTA1- C241T C1387T C3037T C14408T A20268G A23403G G25337T G29734C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_455456
 2020-03-12 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C26088T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_455624
 2020-03-12 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok_2295/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C AAAAAAAAAAAA29892-

EPI_ISL_455922
 2020-03-12 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G11083T C14805T T17247C G26144T

EPI_ISL_455925
 2020-03-12 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0131/2020
 ATTAAAG1- A895G C2942T C3768Y G4390T C8782T C9598T G20134T G24047A G27877T T28144C C29245Y

EPI_ISL_457154
 2020-03-12 2020-06-02
 United Kingdom hCoV-19/England/EXET-135CC1/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457721
 2020-03-12 2020-06-02
 Italy hCoV-19/Italy/4411/2020
 C241T C3037T C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_459863
 2020-03-12 2020-06-04
 Chile hCoV-19/Chile/Talca-25343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462255
 2020-03-12 2020-06-08
 Belgium hCoV-19/Belgium/REGA-0312401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1457T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464793
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/201160271/2020
 C241T C3037T GT5743SY C14408T C16289T A23403G G25429T

EPI_ISL_464800
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/201160647/2020
 C241T C3037T C14408T A23403G A26530R

EPI_ISL_464852
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/201161525/2020
 ATG1605-

EPI_ISL_464874
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/201180001/2020
 C241T C3037T C14408T T17835C A23403G

EPI_ISL_464879
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/201180067/2020
 C936T -11075TTT G11083T C14318T C14805T C23707T G26144T

EPI_ISL_464939
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118070604/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_464958
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118123004/2020
 C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC A29467T

EPI_ISL_464972
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118143104/2020
 G1440A G2891R C10507T G11299T C19113T G28077T

EPI_ISL_464973
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118143704/2020
 A2480G C2558T G4105K T10480C G11083T C14805T T26130C G26144T C27559T

EPI_ISL_464976
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118147904/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_464978
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118148804/2020
 ATG1605- C10450Y

EPI_ISL_464979
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118151104/2020
 A2480G C2558T G11083T C14805T T16309C G26144T

EPI_ISL_464980
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118151404/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_464985
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118158504/2020
 G11083T C14805T C23707T G26144T

EPI_ISL_464989
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20118164704/2020
 C21T G1413R A1515G C9223T -11075TTT G11083T C14805T T17247C C17626T C19781Y G26144T

EPI_ISL_465001
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119000304/2020
 C241T C3037T C14408T A23403G A26530R G29468T

EPI_ISL_465002
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119000404/2020
 C241T C3037T C3373A C11195T C14408T C17440T T20123C A23403G GGG28881AAC

EPI_ISL_465030
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119011704/2020
 A187G C241T C3037T C14408T C14741T A23403G

EPI_ISL_465039
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119029504/2020
 C241T C3037T C3373A C11195T C14408T C15216T A23403G GGG28881AAC

EPI_ISL_465046
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119032104/2020
 C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_465049
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119033504/2020
 C66T C7334T A7479G C9144Y G11083T C14805T C15222T T17247C C21575T C25572T G26144T

EPI_ISL_465065
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119044404/2020
 A2480G C2558T G11083T C14805T C18348T T19728Y C23557T G26144T

EPI_ISL_465083
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119059404/2020
 C241T C3037T C13511T C14408T A23403G GGG28881AAC

EPI_ISL_465091
 2020-03-12 2020-06-11
 United Kingdom hCoV-19/England/20119064904/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_466977 LR824093
 2020-03-12 2020-06-12
 Switzerland 100055
 C241T C3037T C12085Y C14408T C15324T A15887M G16188T T19350W C22413M A23403G

EPI_ISL_466979 LR824097
 2020-03-12 2020-06-12
 Switzerland 100057
 C241T C3037T C14408T A20268G G21538K A22411R A23403G C28854T

EPI_ISL_466980 LR824088
 2020-03-12 2020-06-12
 Switzerland 100058
 C241T C3037T A12825R C14408T C15324T C22347S T22372Y A23403G C28854T

EPI_ISL_466991 LR824101
 2020-03-12 2020-06-12
 Switzerland 100069
 C241T C3037T C4901T C6286T C14408T A19298W C19318Y C19360Y A23403G GGG28881AAC

EPI_ISL_466995 LR824099
 2020-03-12 2020-06-12
 Switzerland 100073
 C241T C3037T A8072G C14408T A19298W T19316Y G19507K A23403G GGG28881AAC C29739T

EPI_ISL_467090
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV002595/2020
 C241T C3037T C12242T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_467097
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001531/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467103
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001587/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467113
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001566/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467114
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001553/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467116
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001560/2020
 A4293G C8782T T9477A C14805T A23586G G25979T T28144C C28657T C28706T C28863T C29870A

EPI_ISL_467126
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001601/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467129
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001588/2020
 C8782T T9477A G11083T C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467132
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001600/2020
 C8782T T9477A C14805T G25244T G25979T T28144C C28657T C28863T

EPI_ISL_467134
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001611/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467153
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001612/2020
 C8782T T9477A C14805T C21997T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467158
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001610/2020
 C8782T T9477A C14805T C17410T G25979T T28144C G28643A C28657T C28863T C29870A

EPI_ISL_467165
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001606/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467172
 2020-03-12 2020-06-12
 Spain hCoV-19/Spain/COV001558/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467599
 2020-03-12 2020-06-14
 United States hCoV-19/USA/NM-UNM-00018/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_467915 MT614510
 2020-03-12 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TAG423- C1059T C1887T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467917 MT614512
 2020-03-12 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467920 MT614515
 2020-03-12 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467964
 2020-03-12 2020-06-16
 United States hCoV-19/USA/CA-SR0436/2020
 G7798T C8782T C17747T A17858G C18060T C20148T T28144C

EPI_ISL_468572 MT627419
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/CO-QDX-89/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468573 MT627420
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/HI-QDX-163/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T

EPI_ISL_468574 MT627421
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/HI-QDX-164/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T

EPI_ISL_468575 MT627422
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/IN-QDX-85/2020
 ATTAAAG1- C241T C3037T C14408T A23403G

EPI_ISL_468576 MT627423
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-100/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_468577 MT627424
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-102/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29364T

EPI_ISL_468578 MT627425
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-105/2020
 ATTAAAGGTT1- C206T A2480G C2558T G11083T G11851T C14805T C17010A A20979T C21575T G26144T

EPI_ISL_468579 MT627426
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-106/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_468580 MT627427
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-108/2020
 G2305T G11083T G11108T C14805T A15779C T17247C T19506C G26144T

EPI_ISL_468581 MT627428
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-109/2020
 C241T C1059T C3037T C3253T C8770T C14408T A23403G G25563T

EPI_ISL_468582 MT627429
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-87/2020
 C241T C1059T C3037T C11289T CC14407TT A23403G G25563T C29509T

EPI_ISL_468583 MT627430
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-88/2020
 C241T C1059T C3037T C4246T C14408T A23403G G25563T

EPI_ISL_468584 MT627431
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-90/2020
 C241T C1059T C3037T C5142T C14408T A23403G G25563T

EPI_ISL_468585 MT627432
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-91/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_468586 MT627433
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-94/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C8917T C14408T C18877T A23403G G25563T

EPI_ISL_468587 MT627434
 2020-03-12 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-95/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_474910
 2020-03-12 2020-06-23
 Spain hCoV-19/Spain/Las_Palmas-COV002593/2020
 C241T C2094T C3037T A10323G C14408T C14980T A20268G A23403G

EPI_ISL_475085
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-08174/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_475128
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50298/2020
 C241T C1059T C3037T A10633C C14408T A23403G G24368T G25563T

EPI_ISL_475129
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50299/2020
 C241T C3037T C10376T C14408T A23403G GGG28881AAC

EPI_ISL_475130
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50301/2020
 C241T C3037T A12790G C13568T C14408T A23403G

EPI_ISL_475131
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50304/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475132
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50305/2020
 G1440A G2891A C7011T

EPI_ISL_475133
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50307/2020
 C241T C1059T C3037T C14408T C19263T A23403G G25563T

EPI_ISL_475134
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50308/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475135
 2020-03-12 2020-06-23
 Sweden hCoV-19/Sweden/20-50313/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_475912
 2020-03-12 2020-06-25
 Austria hCoV-19/Austria/CeMM0562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3177M C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476906 MT827823
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C8782T C16726T C17747T A17858G C18060T T28144C T29410C C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_476910
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C2061T C8782T C17747T A17858G C18060T G21305A T23010C T28144C TG29867AA -29904AAAAAAAAAAAAAAA

EPI_ISL_476911 MT827831
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-631/2020
 A1- AA4CT TCAC95ATGA C241T C1059T C3037T C14408T A23403G G25563T C26270T G29553A -29904AAAA

EPI_ISL_476914 MT827832
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C3037T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_476919
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- C241T C1059T C3037T C14408T A23403G G25563T -29904AAAAAAAAAAAAA

EPI_ISL_476920 MT827815
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-661/2020
 ATTAAAGGTTTATACCTTCC1- C36T C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAA

EPI_ISL_476922
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- TCAC95ATGA C8782T C17747T A17858G C18060T T23010C G25471T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_476923
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACG1- C8782T C17747T A17858G C18060T T23010C T28144C -29904AAAAAAAAAAAA

EPI_ISL_476924 MT827811
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C15720T C17747T A17858G C18060T T28144C TG29867AA C29870A

EPI_ISL_476925 MT827813
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_476926
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-672/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C2061T C8782T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_476931 MT827835
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-685/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T A23403G GGG28881AAC -29904AAAAAAAAAAAAAA

EPI_ISL_476932
 2020-03-12 2020-06-27
 United States hCoV-19/USA/UN-UW-686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AACC34TTTH C2061T C8782T C10641T C17747T A17858G C18060T T23010C T28144C -29904AAAAAAAAAAAAAA

EPI_ISL_476936 MT827818
 2020-03-12 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAG1- C8782T C11704T C17747T A17858G C18060T T22020C T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_479855
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C8782T G16381A T17877C T28144C G28878A G29742A TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_479856
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_479857
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_479858
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C C27297T T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479859
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_479862
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- A3132G C4776T G11083T G11410A G14268A C21711T A23941G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479873
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C5512T G11083T C11752T C19170A G28857T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479874
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C5512T G11083T C11752T C19170A G28857T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479875
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C17825T C19170A C24334T C29614T C29724T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479876
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C11752T C19170A C24334T C29614T TTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29820-

EPI_ISL_479877
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C5691T C11752T C19170A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479923
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- A2160G T4402C G5062T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479999
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T G14140T C14408T A23403G A25167C C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480103
 2020-03-12 2020-07-01
 Japan hCoV-19/Japan/PG-0437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T G16381A T17877C T19420C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480796 MT703963
 2020-03-12 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481253
 2020-03-12 2020-07-03
 Germany hCoV-19/Germany/BW-RKI-N-0001/2020
 ATTAAAGGTTTAT1- C241T C3037T C11878T C14408T C15324T A23403G C23575T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_482578
 2020-03-12 2020-07-04
 China hCoV-19/Hangzhou/HZCDC6445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C23575T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482991
 2020-03-12 2020-07-06
 United States hCoV-19/USA/MN-MDH-1270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C8782T T28144C G28878A G29742A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_482992
 2020-03-12 2020-07-06
 United States hCoV-19/USA/MN-MDH-1271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1102T C8782T A17858G C18060T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482993
 2020-03-12 2020-07-06
 United States hCoV-19/USA/MN-MDH-1272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_482996
 2020-03-12 2020-07-06
 United States hCoV-19/USA/MN-MDH-1275/2020
 ATTAAAGGTTTA1- C8782T C17010T A17858G C18060T T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_482997
 2020-03-12 2020-07-06
 United States hCoV-19/USA/MN-MDH-1276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_483718
 2020-03-12 2020-07-08
 Israel hCoV-19/Israel/n14264/2020
 C241T G625A C3037T G4412- G5200C TG5285- -6697T C6813T A8651C G9270C -10047T C12499T G12824- A12949T C13458T A13696T C14408T C18877T T18884C C19943A C20179T TG22483- A23403G T24948C G25563T

EPI_ISL_483720
 2020-03-12 2020-07-08
 Israel hCoV-19/Israel/n14265/2020
 C241T AA2514- C3037T T4546C C14408T C18877T G22487- A23403G G25563T

EPI_ISL_484191
 2020-03-12 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265E368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C5170T C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485838 MT739444 MT913057
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38R C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485840 MT739446 MT913059
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T TTA20339- A23403G G25563T

EPI_ISL_485842 MT739448 MT913061
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C799T C1427T A8212G C8782T G8828A C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485844 MT739450 MT913063
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0543/2020
 AT1- C3589T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485849 MT739455 MT913068
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_485850 MT739456 MT913069
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T G10523C C12119T C14408T C18086A A23403G G25563T

EPI_ISL_485854 MT739460 MT913073
 2020-03-12 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0553/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485944
 2020-03-12 2020-07-10
 United States hCoV-19/USA/CT-UW-673/2020
 ATTAAAGGTTTAT1- TCT232CAC G237A C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_485948
 2020-03-12 2020-07-10
 United States hCoV-19/USA/OR-UW-679/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C241T C1059T C3037T C14408T G14730A AA14732TG A17701T GC17706TA C21059T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_488466
 2020-03-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-284178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G256A C3037T C5310T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488737
 2020-03-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-28414B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488764
 2020-03-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-281357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488771
 2020-03-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-281348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15380T C19934Y A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488806
 2020-03-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-2813A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492505
 2020-03-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C17825T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492575
 2020-03-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1309FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T6634Y C6696T C11001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492672
 2020-03-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130BBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C13423T C14805T T17247C TGTAACTTTGAAGCAAGG25428- G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492694
 2020-03-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1309ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C6696T T9642K C11001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494571
 2020-03-12 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_494573
 2020-03-12 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G

EPI_ISL_495118
 2020-03-12 2020-07-22
 United Kingdom hCoV-19/England/BRIS-1331A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498009
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498011
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2110/2020
 ATTA1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498012
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2111/2020
 G5572T G11083T C14805T G26144T G27441T AAA29901-

EPI_ISL_498014
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2113/2020
 ATTA1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_498015
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2114/2020
 A1- G5572T G11083T G14055T C14805T G26144T

EPI_ISL_498016
 2020-03-12 2020-07-26
 South Korea hCoV-19/Korea/KCDC2115/2020
 AT1- G5572T G11083T C14805T G26144T G27441T

EPI_ISL_499816
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4C46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G431A ATG1605- C20270T C23114Y G26754A C28725T A29683T

EPI_ISL_500040
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G21624T A23403G GGG28881AAC

EPI_ISL_500055
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T G15380T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500068
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4AB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1321M C1567T G11083T C14805T T17247C G26144T

EPI_ISL_500073
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4B2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G C9223T G11083T C14805T T17247C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500083
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4CDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G16075T T18689A C20031A C21614T A23403G C27046T GGG28881AAC

EPI_ISL_500084
 2020-03-12 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4D16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_500636
 2020-03-12 2020-07-29
 Australia hCoV-19/Australia/NSW2158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507049
 2020-03-12 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D05D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C7279T G11083T C14805T G26144T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_508765 MT834607
 2020-03-12 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_508873
 2020-03-12 2020-08-04
 France hCoV-19/France/ARA07910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508946
 2020-03-12 2020-08-04
 France hCoV-19/France/ARA08067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTC1- C241T C1059T C3037T C14408T A23403G G25563T G28423A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508947
 2020-03-12 2020-08-04
 France hCoV-19/France/ARA0814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T T469C C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_510268
 2020-03-12 2020-08-06
 Spain hCoV-19/Spain/COV004025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T3331Y C12400T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510320
 2020-03-12 2020-08-06
 Spain hCoV-19/Spain/COV005011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510323
 2020-03-12 2020-08-06
 Spain hCoV-19/Spain/COV005014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510325
 2020-03-12 2020-08-06
 Spain hCoV-19/Spain/COV005016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C11651A C17470T C26088T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510424
 2020-03-12 2020-08-06
 Spain hCoV-19/Spain/COV006080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T G21786A A23403G G29009A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_513415 MT886289
 2020-03-12 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGT1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_515295
 2020-03-12 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0006/2020
 ATTA1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_515296
 2020-03-12 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0007/2020
 AT1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_516802
 2020-03-12 2020-08-24
 Singapore hCoV-19/Singapore/830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523523
 2020-03-12 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523524
 2020-03-12 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523526
 2020-03-12 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523937
 2020-03-12 2020-08-27
 Germany hCoV-19/Germany/NW-66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C9603T C26151T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523948
 2020-03-12 2020-08-27
 Germany hCoV-19/Germany/NW-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9344T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523966
 2020-03-12 2020-08-27
 Moldova hCoV-19/Moldova/ChVir7777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_525603
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13894-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525604
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13903-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T ATGGTCATGTTATGGTTG507- C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525605
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13904-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525606
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13972-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C26198T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525607
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13977-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C17747T A17858G C18060T A21944G T28144C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525608
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-13978-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18877T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525609
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-14203-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C17747T A17858G C18060T T28144C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525610
 2020-03-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-14368-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G25429T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526937
 2020-03-12 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1302T C3037T C6196T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_528016
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42186690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_528020
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528021
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528022
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G22487C A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528024
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G G24095T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528025
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528027
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42187833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528028
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528029
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42187936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G17722T A23403G AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_528030
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/AG-UHB-42187967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G G28881T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528031
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42188011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G9190T C14408T G15380T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528032
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42188088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G T26286C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528033
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42188149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C17285T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528034
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42188447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C3037T C14408T A23403G G29050A GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_528037
 2020-03-12 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42188679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_529961
 2020-03-12 2020-09-10
 Indonesia hCoV-19/Indonesia/JI-ITD-136N/2020
 ATTAAAGGTTT1- A20294G

EPI_ISL_534731
 2020-03-12 2020-09-14
 United States hCoV-19/USA/NY-WC-13741-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535731
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T C14408T A23403G C28651T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535732
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215586/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C5284T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535735
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535736
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535737
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535738
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C2295T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535739
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T C20078A G20578T A23403G A23572G C23575T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535740
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535741
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535742
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535743
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00215981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535744
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535745
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2831C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535749
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535751
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11514T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535764
 2020-03-12 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536440
 2020-03-12 2020-09-16
 Singapore hCoV-19/Singapore/899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_537577
 2020-03-12 2020-09-16
 United States hCoV-19/USA/CA-UCLA-48/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_537584
 2020-03-12 2020-09-16
 United States hCoV-19/USA/CA-UCLA-59/2020
 ATTAAAGGTTTATACC1- C241T AAGTCATTT686- C2416T C3037T C14408T A23403G G25563T G27915A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_537602
 2020-03-12 2020-09-16
 United States hCoV-19/USA/CA-UCLA-81/2020
 ATTAAAGGTTTATAC1- G1397A G11083T T28688C G28851T G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_537836
 2020-03-12 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T C29870A

EPI_ISL_537837
 2020-03-12 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G G29734C C29870A

EPI_ISL_538842
 2020-03-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA14F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T C28313Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538933
 2020-03-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539144
 2020-03-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8CD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539499
 2020-03-12 2020-09-18
 Spain hCoV-19/Spain/AN-ISCIII-202657/2020
 C241T AC538TA G4444T AA4452TG CA4456TT A4892G G5286A A5511T T5514G C8782T T9320A T9477A G10565A C12876T C14805T T24141C G24164A T24371A T25735A G25979T A25985G A26030G A26583G A26662C T26731C C27641T T28144C C28657T C28863T

EPI_ISL_539520
 2020-03-12 2020-09-18
 Spain hCoV-19/Spain/CE-ISCIII-202293/2020
 C1342T A1830G G11083T C14805T TGT22643ACA T22655C TCT22658CTG G26144T

EPI_ISL_540434 MW021514
 2020-03-12 2020-09-21
 United States SARS-CoV-2/human/USA/TN-CDC-7936/2020
 C241T C1059T C3037T C14408T T18513A A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_541370
 2020-03-12 2020-09-22
 Brazil hCoV-19/Brazil/SC-770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T A5706G C14408T A23403G T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541375
 2020-03-12 2020-09-22
 Brazil hCoV-19/Brazil/SE-6535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A20268G A23403G A25018T GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_547453
 2020-03-12 2020-09-24
 Netherlands hCoV-19/Curacao/CW-RIVM-10100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C C16762T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547462
 2020-03-12 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C A6350C C17410T G28028T A29735G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568918
 2020-03-12 2020-10-02
 France hCoV-19/France/IHU-0659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4002T C6861T G10097A C13536T A14240G C14408T A23403G C23731T C28391T GGG28881AAC G29692T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569251
 2020-03-12 2020-10-02
 France hCoV-19/France/IHU-0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569326
 2020-03-12 2020-10-02
 France hCoV-19/France/IHU-0130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T G11083T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT452574
 2020-03-12 2020-05-10
 United States SAR-CoV-2/human/USA/NY-QDX-00000001/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T

MT459855
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/139_32716/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459857
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/141_32983/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C16073T A23403G GGG28881AAC C28887T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459865
 2020-03-12 2020-05-11
 Greece SARS-CoV-2/human/GRC/150_32764/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C2508T G9190T G11083T C14805T G15919T T17247C G26144T G26172A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT670015
 2020-03-12 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-25343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810479
 2020-03-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1380-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- T833C C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810481
 2020-03-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1382-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810565
 2020-03-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0436-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G7798T C8782T C17747T A17858G C18060T C20148T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811175
 2020-03-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0118-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T C20628T A25980C T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT827816
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACG1- C8782T C17747T A17858G C18060T T23010C T28144C

MT827820
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C2061T C8782T C10641T C17747T A17858G C18060T T23010C T28144C

MT827822
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C2061T C8782T C17747T A17858G C18060T T23010C T28144C

MT827825
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- TCAC95ATGA C8782T C17747T A17858G C18060T T23010C G25471T T28144C

MT827836
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C241T C1059T C3037T C14408T A23403G G25563T

MT827839
 2020-03-12 2020-08-02
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C2061T C8782T C17747T A17858G C18060T G21305A T23010C T28144C TG29867AA

NMDC60013261
 2020-03-12 2020-06-01
 China hCoV-19/Guangzhou/ID006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_415486 LR878100
 2020-03-13 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G11083T T13078C G14653T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415487 LR878094
 2020-03-13 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T A23403G T25414C G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415488 LR878108
 2020-03-13 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G A24862G G27870T G29477T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415489 LR878099
 2020-03-13 2020-03-17
 Netherlands hCoV-19/Netherlands/NA_32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415539
 2020-03-13 2020-03-17
 United States hCoV-19/USA/UT-01/2020
 G11083T C18060T C26326T

EPI_ISL_415541
 2020-03-13 2020-03-17
 United States hCoV-19/USA/UT-03/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_415542
 2020-03-13 2020-03-17
 United States hCoV-19/USA/UT-04/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_415543
 2020-03-13 2020-03-17
 United States hCoV-19/USA/UT-05/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_415544
 2020-03-13 2020-03-17
 United States hCoV-19/USA/UT-06/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_416482
 2020-03-13 2020-03-22
 Georgia hCoV-19/Georgia/Tb/2020
 ATT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416690 MT252728
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T T28144C AAA29901-

EPI_ISL_416691 MT252729
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C936T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416694 MT252727
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW156/2020
 ATTAAAG1- C8782T AGG13512TTA C17747T A17858G C18060T G20128A T27384C T28144C C29518T AAAA29900R

EPI_ISL_416696 MT252731
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW158/2020
 ATTAAAGGTTTA1- C2676T C8782T A22606T T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416697 MT252732
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862A

EPI_ISL_416698 MT252733
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904ANANAAANANG

EPI_ISL_416699 MT252722
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_416700 MT252723
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C2469T C8782T C17747T A17858G C18060T C18877T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_416701 MT252721
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- TT6963AC C6968A C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAA29892-

EPI_ISL_416703 MT252724
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T C17747T A17858G C18060T G20991A T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_416705 MT252699
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416706 MT252700
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C6312A G11083T C13730T C23929T C28311T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416709 MT252707
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW171/2020
 ATTAAAGGTTTATAC1- C8782T C17747T A17858G C18060T G21255C G25273C T28144C A29866C GA29868BT AAA29901-

EPI_ISL_416710 MT252708
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C1238T C3593T C4683T T4779C C8782T C17747T A17858G C18060T A27200G T28144C T28924C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416716 MT252697
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416720
 2020-03-13 2020-03-23
 United States hCoV-19/USA/WA-UW182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCA1- -8652TGTTTAAACATACTGACTTTTCAAGTGAAATCATAGGATACAAGGCTATTGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN C8782T T10763C -13066ATCTTTCTGTGCTTTTGCTGTAGATGCTGCTAAAGCTTACAAAGATTATCTAGCTAGTGGTGGACAACCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN G13126T C17747T A17858G C18060T T27384C T28144C A29865C G29868C -29904ANANANANANAG

EPI_ISL_416721 MT252698
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_416724 MT252705
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416725 MT252706
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416726 MT252702
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW188/2020
 T2- GG7AA A460G A7079G C8782T C17747T A17858G C18060T T28144C -29904GAVNNAAAA

EPI_ISL_416727 MT252703
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T T11320C C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416728 MT252704
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T C17747T A17858G C18060T T28144C A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416729 MT252696
 2020-03-13 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_417016
 2020-03-13 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417315
 2020-03-13 2020-03-25
 United Kingdom hCoV-19/England/20118044606/2020
 A2480G C2558T A6474G A9634T G11083T C14805T G26144T

EPI_ISL_417330 MT419851
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/CA-CDPH-UC26/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417341 MT246449
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_417342 MT246450
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_417343 MT246451
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T G16075T T18689A C20031A A23403G C27046T GGG28881AAC -29904AAANANAAA

EPI_ISL_417344 MT246452
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW195/2020
 ATTAAAG1- C8782T C17747T A17858G C18060T A27525G T28144C AAAAAAAA29896-

EPI_ISL_417345 MT246453
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAA29898-

EPI_ISL_417353 MT246461
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW204/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C8782T C17747T A17858G C18060T C21575T G22988A T28144C -29904TANATA

EPI_ISL_417354 MT246462
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW205/2020
 T2H G8768A C8782T C17747T A17858G C18060T A27525G T28144C

EPI_ISL_417356 MT246464
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T C17747T A17858G C18060T C27276T T27384C T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_417358 MT246466
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW209/2020
 ATTAAA1- AACC34HTTH C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417362 MT246470
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW213/2020
 ATTAAAGGTTTATACCTT1- AACC34HTTH C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_417367 MT246475
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW218/2020
 ATTAAAGGTTTATACCTTCC1- C8782T C9180T G11083T C16887T C17747T A17858G C18060T T28144C C29774T AAAAAA29898-

EPI_ISL_417368 MT246476
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C5052T C8782T C17474T C17747T A17858G C18060T G27226T T28144C A29903-

EPI_ISL_417371 MT246479
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- T221C C8782T C17747T A17858G C18060T T28144C G29862A A29903-

EPI_ISL_417372 MT246480
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW223/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T -29904AA

EPI_ISL_417373 MT246481
 2020-03-13 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- AACC34HTTH C241T C1059T C3037T C14408T A23403G G25563T -29904AA

EPI_ISL_417401
 2020-03-13 2020-03-25
 Australia hCoV-19/Australia/NSW45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C6312A G11083T C13730T C23929T C28311T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417402
 2020-03-13 2020-03-25
 Australia hCoV-19/Australia/NSW47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G G25483A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417456 MT251980
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C140T G4642A TAG4879- C8782T C12213T C17747T A17858G C18060T C27807T T28144C G29862D AAAA29900-

EPI_ISL_417463 MT582482
 2020-03-13 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-18/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417473 MT911542
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN36-MDH36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21191M A23403G A25876R CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_417478 MT911546
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN42-MDH42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223Y C14805T T17247Y G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417492 MT911549
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN45-MDH45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6078Y G13489R C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_417493 MT911550
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN46-MDH46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13019T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417494 MT911551
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN47-MDH47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G -29820T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417495 MT911552
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN48-MDH48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839T

EPI_ISL_417496 MT911553
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN51-MDH51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21191M A23403G A25876R -29716A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_417497 MT911554
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN52-MDH52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3738Y C14408T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417498
 2020-03-13 2020-03-26
 United States hCoV-19/USA/MN53-MDH53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A4912C C14805T C17010A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417499 MT911555
 2020-03-13 2020-03-26
 United States SARS-CoV-2/human/USA/MN55-MDH55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417514
 2020-03-13 2020-03-27
 United States hCoV-19/USA/WI-UW-22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417522 MT374105
 2020-03-13 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-09/2020
 AT1- G11083T C14805T T17247C G26144T A29903-

EPI_ISL_417523 MT374106
 2020-03-13 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-10/2020
 AT1- C228T G1397A G9479T A9514G G11083T A19818G G26720C G28202T T28688C T28835C G29742T AA29902-

EPI_ISL_417694
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/3/2020
 C241T C3037T C14408T G18214T A23403G A26530G

EPI_ISL_417711
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/150/2020
 A187G C241T C3037T C14408T C16017T T16515C A23403G

EPI_ISL_417739
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/5/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417741
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/145/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417744
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/137/2020
 C241T C799T C14408T A20268G A23403G

EPI_ISL_417745
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/152/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417755
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/169/2020
 C241T A1331G C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417759
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/166/2020
 G1440A G2891A C7011T G25593C

EPI_ISL_417793
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/142/2020
 G1440A G2891A C27661T

EPI_ISL_417795
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/144/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417796
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/146/2020
 C241T C3037T C14408T G16864A A23403G GGG28881AAC

EPI_ISL_417797
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/147/2020
 C186T C241T AAGTCATTT686- C1059T C3037T G11552T C14408T A23403G T24907C G25563T

EPI_ISL_417798
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/148/2020
 C241T C799T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_417799
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/149/2020
 C151T C241T C3037T C14408T A23403G A26530G

EPI_ISL_417801
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/151/2020
 T3034C G11083T C14805T C16054T T17247C T17859C G26144T G29751C

EPI_ISL_417802
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/153/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417803
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/156/2020
 A187G C241T C3037T C14408T C15857T A23403G

EPI_ISL_417804
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/157/2020
 C241T T658C C3037T C14408T A23403G A24862G C28629T

EPI_ISL_417805
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/158/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417806
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/159/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_417810
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/168/2020
 C28T C241T C3037T A8203G A10323G C14408T A20268G A23403G G24193T

EPI_ISL_417854
 2020-03-13 2020-03-27
 Iceland hCoV-19/Iceland/6/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417964 MT334533
 2020-03-13 2020-03-27
 United States SARS-CoV-2/human/USA/UT-00014/2020
 AT1-C C8782T C17747T A17858G C18060T T28144C G28727T

EPI_ISL_418006
 2020-03-13 2020-03-28
 Portugal hCoV-19/Portugal/PT0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418007
 2020-03-13 2020-03-28
 Portugal hCoV-19/Portugal/PT0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25273T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418008
 2020-03-13 2020-03-28
 Portugal hCoV-19/Portugal/PT0023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4444T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418028 MT259235
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C241T C1059T C3037T A13748G C14408T A23403G G25563T C27964T AAAA29900-

EPI_ISL_418036 MT259243
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418039 MT259246
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- A35W T150C T153G C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418042 MT259249
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAA1- C241T C1059T C1191T C3037T C14408T G21724C A23403G G25563T C27964T

EPI_ISL_418049 MT259256
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW264/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T C27964T C28099T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418051 MT259258
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/MN-UW266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAA1- C1059T C3037T C14408T A23403G G25563T C27964T C28099T T29867A -29904AAAAAAAAAAAAA

EPI_ISL_418056 MT259263
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW271/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C3037T C14408T A23403G GGG28881AAC -29904VAARAA

EPI_ISL_418057 MT259264
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW272/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_418059 MT259266
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_418061 MT259268
 2020-03-13 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C8782T C17747T A17858G C18060T T28144C A29869T -29904AAA

EPI_ISL_418110
 2020-03-13 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-23D6A/2020
 ATTA1- G1440A G2891A G28851T

EPI_ISL_418216
 2020-03-13 2020-03-29
 Senegal hCoV-19/Senegal/136/2020
 C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T

EPI_ISL_418230
 2020-03-13 2020-03-29
 France hCoV-19/France/IDF2420/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T C15324T A23403G AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_418364
 2020-03-13 2020-03-13
 Canada hCoV-19/Canada/ON_PHL6922/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418377
 2020-03-13 2020-03-13
 Canada hCoV-19/Canada/ON_PHL1898/2020
 A1- C190G C241T C3037T C14408T A23403G G25563T GTTCTA28090- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418379
 2020-03-13 2020-03-13
 Canada hCoV-19/Canada/ON_PHL7512/2020
 A1- C854T TGT1576- ATG1605- G3287T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418380
 2020-03-13 2020
 Canada hCoV-19/Canada/ON_PHL3476/2020
 A1- T184- T8767C C8782T T10771C C17747T A17858G C18060T A25031T G25166A T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418386
 2020-03-13 2020-03-13
 Finland hCoV-19/Finland/13M26/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_418390
 2020-03-13 2020-03-13
 Finland hCoV-19/Finland/13M33/2020
 C241T C2416T C3037T A10874G C14408T G19559T A23403G G23611A G25563T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_418391
 2020-03-13 2020-03-13
 Finland hCoV-19/Finland/13M57/2020
 C241T C3037T C14408T A20268G A23403G C28854T AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_418392
 2020-03-13 2020-03-13
 Finland hCoV-19/Finland/13M58/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_418395
 2020-03-13 2020-03-13
 Finland hCoV-19/Finland/13M65/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_418671
 2020-03-13 2020-03-30
 United Kingdom hCoV-19/England/20119026102/2020
 C241T C3037T C14408T G14580T A23403G

EPI_ISL_418734
 2020-03-13 2020-03-30
 United Kingdom hCoV-19/England/20124097102/2020
 G11083T C14805T C15480T C23707T A25056G G26144T

EPI_ISL_418771 MT262896
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH2/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418772 MT262897
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH3/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418773 MT262898
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH4/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418774 MT262899
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH5/2020
 C8782T T13845C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418775 MT262900
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH6/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418776 MT262901
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH7/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418777 MT262902
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH8/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418778 MT262903
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH9/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418779 MT262904
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH10/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418780 MT262905
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH11/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418781 MT262906
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH12/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418782 MT262915
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH13/2020
 C8782T C17747T A17858G C18060T G23120T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418783 MT262907
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH14/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418784 MT262908
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH17/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418785 MT262909
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH18/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418786 MT262910
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH19/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418787 MT262911
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH20/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418788 MT262912
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH21/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418789 MT262913
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH22/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418790 MT262916
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH23/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418791 MT262914
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-NH24/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418813
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/MB_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418814
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/NS_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A6400G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418817
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_0554880/2020
 C7200T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418849
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_8486790/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_418851
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_8622445/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418856
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_9345042/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_418857
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_9345715/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_418858
 2020-03-13 2020-03-31
 Canada hCoV-19/Canada/BC_9446031/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T

EPI_ISL_418866 MT263381
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW298/2020
 ATTAAAG1- AACC34WTTM C8782T C17747T A17858G C18060T T28144C -29904AAANANAAANADA

EPI_ISL_418867 MT263382
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW299/2020
 ATTAAAGGTTTAT1- AACC34TTTA C8782T C17747T A17858G C18060T T28144C A29866T GA29868BT -29904AHATANANA

EPI_ISL_418868 MT263383
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- G219T C8782T C17747T A17858G C18060T T28144C TG29867AA

EPI_ISL_418882 MT263396
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW315/2020
 AT1TG A4H C8782T C17747T A17858G C18060T T28144C A29880C

EPI_ISL_418893 MT263406
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/MN-UW326/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C10319T C14408T C15720T A23403G G25563T C27964T GA29868CT -29904AAAAAAAA

EPI_ISL_418901 MT263414
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C2110T C8782T C17747T A17858G C18060T C21575T T28144C

EPI_ISL_418902 MT263415
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/MN-UW335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C673T C1059T C3037T C4683T C14408T A23403G G25563T C27964T -29878AAACAAAAAAC

EPI_ISL_418915 MT263428
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/IL-UW348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- C241T C1059T C3037T C5183T C14408T A23403G G25563T G25691T A29903-

EPI_ISL_418916 MT263429
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/IL-UW349/2020
 ATTAAAGGTTTAT1- AACC34HTTA G1440A G2891A C28854T A29903-

EPI_ISL_418918 MT263431
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C11916T C14408T A23403G G25563T A29903-

EPI_ISL_418919 MT263432
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- A55C C241T C1059T C3037T C14408T A23403G G25563T -29904AAANAAANAA

EPI_ISL_418920 MT263433
 2020-03-13 2020-03-30
 United States SARS-CoV-2/human/USA/IL-UW353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34HTT C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_419310 LC547532
 2020-03-13 2020-04-02
 Japan hCoV-19/Japan/P5-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_419311 LC547533
 2020-03-13 2020-04-02
 Japan hCoV-19/Japan/P5-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29229A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419392 MT911563
 2020-03-13 2020-04-02
 United States SARS-CoV-2/human/USA/MN64-MDH64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419582
 2020-03-13 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS3156434/2020
 A187G C241T C3037T C14408T A23403G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_419584
 2020-03-13 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS3711853/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419600
 2020-03-13 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS9080444/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_419660
 2020-03-13 2020-04-03
 Austria hCoV-19/Austria/CeMM0007/2020
 C241T C3037T C14408T C18877T A23403G G25563T A28049R TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419771 MT450974
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T

EPI_ISL_419772 MT450975
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC60/2020
 ATTA1- C21T G7007A C8782T G18180A C26088T T28144C C28868A

EPI_ISL_419774 MT450977
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_419780 MT450980
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C1076T G1397A G11083T T28688C G29742T

EPI_ISL_419781 MT450981
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC67/2020
 A1- C8782T C17747T A17858G C18060T T28144C T29855C

EPI_ISL_419782 MT450982
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C17747T A17858G C18060T A24694T G25340A T28144C

EPI_ISL_419783 MT450983
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC69/2020
 ATTA1- C8782T C17747T A17858G C18060T A24694T G25340A T28144C

EPI_ISL_419786 MT450984
 2020-03-13 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C14805T T17247C G26144T

EPI_ISL_420129
 2020-03-13 2020-04-05
 Spain hCoV-19/Spain/Valencia45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C2997T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420532
 2020-03-13 2020-04-06
 Australia hCoV-19/Australia/WA02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G C25350T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420537
 2020-03-13 2020-04-06
 Australia hCoV-19/Australia/WA07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- T1368C C6990T G11083T C14805T C20736T C23707T G26144T C27925T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420628 MT322412
 2020-03-13 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0024/2020
 AT1- C8626T C8782T C17747T A17858G C18060T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_421354 MT370915
 2020-03-13 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T A2018G C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421360 MT370881
 2020-03-13 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A20755C A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421415 MT370889
 2020-03-13 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G A24520G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_422408
 2020-03-13 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU05/2020
 C241T C1059T A2219G C3037T C14408T C23185T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422409
 2020-03-13 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU06/2020
 A1515G C9223T G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422410
 2020-03-13 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU07/2020
 ATG1605- G2036A C3990T A18333T C19011T A23614G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422430
 2020-03-13 2020-04-10
 Singapore hCoV-19/Singapore/37/2020
 ATTAAA1- C241T G373K C1059T C1093M C3037T C13643Y C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_422644 LR877940
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A A6466G C7164T T7672C G11083T C12651T C23191T G26196A C28377T T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422799 LR878116
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422801 LR878120
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422802 LR878125
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- A2871G C17410T C24919T G27390T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422803 LR878126
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422868 LR878114
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422869 LR877736 LR878140
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A12820G C13119T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422905 LR878135
 2020-03-13 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A12820G C13119T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422961
 2020-03-13 2020-04-12
 United States hCoV-19/USA/IL-UW-1265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH G578A C8782T C17747T A17858G C18060T A24694T C25207T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_425471
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF32/2020
 ATG1605- C13965T C20270T

EPI_ISL_425650
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425652
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22208T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425653
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20823T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425654
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20823Y A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425670
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425671
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C G29227A C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425730
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR20/2020
 

EPI_ISL_425739
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425759
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T C14408T A23403G T26497C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_425760
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425761
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425764
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9967Y G11083T C14805T T17247C G26144T G27915R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425765
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9246T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425766
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C5340T G11083T C14805T T22574C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425767
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9565T C14408T C22277A A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425769
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T C3037T C3373A C14408T A23403G T26066Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425770
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C5340T G11083T C14805T T22574C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425772
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G443A A1587G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425773
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425774
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425777
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10741T C14408T A23403G C27046T C28344A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425779
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425783
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425791
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26640T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425817
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26640T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425827
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB021/2020
 C241T C3037T C14408T A23403G

EPI_ISL_425839
 2020-03-13 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB033/2020
 C241T C3037T G10201T C14408T A23403G GGG28881AAC G29540T

EPI_ISL_426515
 2020-03-13 2020-04-17
 United States hCoV-19/USA/AZ-TG268909/2020
 C241T C1059T C3037T C14408T C19862T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427294
 2020-03-13 2020-04-18
 Brazil hCoV-19/Brazil/DF-615i/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_427295
 2020-03-13 2020-04-18
 Brazil hCoV-19/Brazil/DF-619i/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_427531
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4A02N/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427532
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4B06P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427533
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4C01P/2020
 C241T C1059T C3037T C7735T C14408T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427534
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4C02N/2020
 C241T C1059T C3037T C7735T C14408T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427535
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4D01P/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427536
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4D04P/2020
 C6720T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871W

EPI_ISL_427537
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4E05P/2020
 C241T C1059T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870WCGG

EPI_ISL_427538
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4G04P/2020
 C241T C1059T C3037T C6145T C14408T C21575Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_427539
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP4H03P/2020
 C241T C1059T C3037T C6573T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_427540
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP5F01P/2020
 C241T C1059T C3037T G12769T C14408T A23403G G25563T G26452T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427541
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP5G03P/2020
 G11083T C14805T T17247C G26144T C27883T A29871R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427542
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP5H02P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871R

EPI_ISL_427543
 2020-03-13 2020-04-19
 United States hCoV-19/USA/NY-WCMP5H03P/2020
 G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_428724
 2020-03-13 2020-04-21
 United States hCoV-19/USA/WI-UW-250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428831
 2020-03-13 2020-04-22
 Singapore hCoV-19/Singapore/52/2020
 ATTAAA1- T87Y A1515R C4331T C9223T G11083T C14805T T17247C G26144T C28775T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_428868
 2020-03-13 2020-04-22
 Russia hCoV-19/Russia/StPetersburg-64304/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428869
 2020-03-13 2020-04-22
 Russia hCoV-19/Russia/Moscow_64405/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_428870
 2020-03-13 2020-04-22
 Russia hCoV-19/Russia/Moscow-64601/2020
 C241T C2933T C3037T G4255T C14408T G14511T G16935T A23403G A26530G

EPI_ISL_428871
 2020-03-13 2020-04-22
 Russia hCoV-19/Russia/Krasnoyarsk-66501/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429164
 2020-03-13 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A895G C2942T G4390T C8782T C9598T G14212A G20134T G24047A T28144C C28453Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429165
 2020-03-13 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0026/2020
 A1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_429166
 2020-03-13 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0028/2020
 AT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429167
 2020-03-13 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0029/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C

EPI_ISL_429293
 2020-03-13 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH37/2020
 C241T C1059T C1302T C3037T C9979T C14408T A23403G G25563T G29779T

EPI_ISL_429295
 2020-03-13 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH39/2020
 T514C ATG1605- C17410T

EPI_ISL_429300
 2020-03-13 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH46/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429669
 2020-03-13 2020-04-24
 Brazil hCoV-19/Brazil/CV6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C3037T C11956T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_430150 MT627619
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S296/2020
 C8782T C17747T A17858G C18060T G21255C G26365T T28144C

EPI_ISL_430151 MT627615
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S297/2020
 G3955T A8681G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430162 MT632613
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S125/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430163 MT632600
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S126/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430164 MT632602
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S127/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430165 MT632569
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S128/2020
 C8782T T13845C C17747T A17858G C18060T T28144C

EPI_ISL_430166 MT632603
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S129/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430167 MT632610
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S130/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430168 MT632552
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S131/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430170 MT632623
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S133/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430172 MT632580
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S135/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430173 MT632555
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S136/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430174 MT632582
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S137/2020
 C8782T C17747T A17858G C18060T G23120T T28144C

EPI_ISL_430178 MT632618
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S141/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430179 MT632608
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S142/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430185 MT632541
 2020-03-13 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S148/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_430881 MT412233
 2020-03-13 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-531/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- AACC34TTTA C8782T C17747T A17858G C18060T G21255C T28144C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_430888 MT412235
 2020-03-13 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-558/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A31T AAC34TTT C8782T C17747T A17858G C18060T A27397G T28144C

EPI_ISL_430895 MT412234
 2020-03-13 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-604/2020
 ATTAAAGGTTTAT1- CCCAGGTAACAAACCAA19- C36T C8782T C9866T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_431118
 2020-03-13 2020-04-29
 China hCoV-19/Fujian/IM3520001T/2020
 ATTAAAGGTTTATACCTTC1- A26- C28T C241T C1059T C3037T C14408T A23403G G25563T G26589T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_434486
 2020-03-13 2020-04-29
 Greece hCoV-19/Greece/151/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434645
 2020-03-13 2020-04-30
 Sweden hCoV-19/Sweden/20-05627/2020
 C241T C3037T C14408T A23403G

EPI_ISL_434684
 2020-03-13 2020-05-01
 United States hCoV-19/USA/MD-HP00023/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434699
 2020-03-13 2020-05-01
 Thailand hCoV-19/Thailand/NIH-2296/2020
 ATTAAAGGTTTAT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C C29854Y C29857Y AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_434726
 2020-03-13 2020-05-01
 United States hCoV-19/USA/TX-HMH016/2020
 C241T C1059T C3037T C14408T A23403G G24794T G25563T C27964T

EPI_ISL_434727
 2020-03-13 2020-05-01
 United States hCoV-19/USA/TX-HMH017/2020
 C241T C1059T C3037T C14408T A23403G G24794T G25563T C27964T

EPI_ISL_435063
 2020-03-13 2020-05-02
 India hCoV-19/India/NCDC-01326/2020
 C241T C1059T C3037T T8022K A8026W C10449Y C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435313
 2020-03-13 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C14408T A23403G T25652G TT27792- GGG28881AAC A29122C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_435314
 2020-03-13 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14184T C14408T C15720T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_435649
 2020-03-13 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC170/2020
 G26951T C27874T

EPI_ISL_435654
 2020-03-13 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC175/2020
 G26951T C27874T

EPI_ISL_435720
 2020-03-13 2020-05-05
 United States hCoV-19/USA/CT-Yale-151/2020
 C241T C1059T G1149A C3037T C14408T A20755C A23403G G25563T

EPI_ISL_436070 MT434802
 2020-03-13 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0495NYC/2020
 C241T C1059T T5698C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436212
 2020-03-13 2020-05-06
 Spain hCoV-19/Spain/Valencia117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2358T C3037T C5348T C14408T A23403G C25207T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436213
 2020-03-13 2020-05-06
 Spain hCoV-19/Spain/Valencia118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C14805T C20582T G25979T T28144C C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436214
 2020-03-13 2020-05-06
 Spain hCoV-19/Spain/Valencia119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436290
 2020-03-13 2020-05-06
 Spain hCoV-19/Spain/Valencia195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T T17126C A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436292
 2020-03-13 2020-05-06
 Spain hCoV-19/Spain/Valencia197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436812 MT439244
 2020-03-13 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T C26060T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_436814 MT439245
 2020-03-13 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437967
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0108/2020
 C7011Y G11083T C14805Y C18086Y T22521K G26144K G28842K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437975
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0117/2020
 C241T C1059T C3037T C14408T G15380T T22521K A23403G G25563T C27654Y TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_437985
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0132/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T A27023G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437986
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0133/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437987
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0134/2020
 C241T A761G C1059T C3037T A6825C C14408T T22521K A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_437988
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0135/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437989
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0136/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437990
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0137/2020
 C241T C3037T C3373A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437991
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0139/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_437992
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0140/2020
 C241T C1059Y C3037T C3373M C14408T G15380K A23403G G25563K GGG28881RRS AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438029
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0188/2020
 C241T C1059T C3037T G13921K C14408T A23403G T25414Y G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_438030
 2020-03-13 2020-05-12
 Italy hCoV-19/Austria/CeMM0189/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_438031
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0190/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_438032
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0191/2020
 T514C C17410T T22521K G28048T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438033
 2020-03-13 2020-05-12
 Austria hCoV-19/Austria/CeMM0192/2020
 G1440A C7011T AAAAAAAAAAA29893-

EPI_ISL_440399
 2020-03-13 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7558F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C3037T C3373A C11195T C14408T A23403G G23755T T25202K GGG28881AAC

EPI_ISL_444455 EPI_ISL_454693
 2020-03-13 2020-05-28
 United States hCoV-19/USA/CA-QDX-03-2/2020
 G4285T C8782T C17747T A17858G C18060T T28144C C29642T AAAAAAAAAAAAAAAA29888-

EPI_ISL_444493 MT466071
 2020-03-13 2020-05-13
 Uruguay SARS-CoV-2/human/URY/Mdeo-1/2020
 C8782T C17470T C26088T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_444518 EPI_ISL_454692
 2020-03-13 2020-05-28
 United States hCoV-19/USA/WA-QDX-02-2/2020
 G2840A G5572T C8782T C17747T A17858G C18060T A26045G T28144C

EPI_ISL_445096
 2020-03-13 2020-05-15
 United States hCoV-19/USA/CA-SR0097/2020
 C8782T C17747T A17858G C18060T C21614T A24694T G26929A T28144C C29870A

EPI_ISL_445271
 2020-03-13 2020-05-15
 Chile hCoV-19/Chile/Chillan_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445358
 2020-03-13 2020-05-15
 Chile hCoV-19/Chile/Santiago_62/2020
 T2C A4T A7591R C8782T C14599T G18826T C19983T C26088T C26873T T28144C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_447121
 2020-03-13 2020-05-16
 Belgium hCoV-19/Belgium/ULG-6842/2020
 G1440A G2891A

EPI_ISL_447123
 2020-03-13 2020-05-16
 Belgium hCoV-19/Belgium/ULG-9535/2020
 C241T C3037T C14408T A23403G

EPI_ISL_447638 MT459874
 2020-03-13 2020-05-11
 Greece SARS-CoV-2/human/GRC/206_33492/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447639 MT459875
 2020-03-13 2020-05-11
 Greece SARS-CoV-2/human/GRC/207_33548/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447921
 2020-03-13 2020-05-19
 Thailand hCoV-19/Thailand/Bangkok_2294/2020
 C2708T C6312A T8987A G11083T C13730T C23929T C28311T AAAA29900-

EPI_ISL_450096
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T ACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29768-

EPI_ISL_450097
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_450099
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450100
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G G25644T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_450101
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450105
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C27964T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450111
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T T9070C T10960C C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450112
 2020-03-13 2020-05-20
 United States hCoV-19/USA/NY-PV09435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450514
 2020-03-13 2020-05-21
 Lebanon hCoV-19/Lebanon/S8_767/2020
 CT40AC C241T C3037T C6198A A8651- C8655T A8658G C13381T C14408T A23403G G25563T C25609T C28354T

EPI_ISL_451673 LR824235
 2020-03-13 2020-05-25
 Switzerland 100081
 C241T C3037T A8095R C14408T C15324T A23403G

EPI_ISL_451674 LR824237
 2020-03-13 2020-05-25
 Switzerland 100082
 C241T C3037T C12100T C14408T C15324T T22516D A23403G

EPI_ISL_451675 LR824236
 2020-03-13 2020-05-25
 Switzerland 100083
 C241T C3037T C4582Y C14408T C15324T C17336Y C19366M T19370H T19538Y A22398M T22516K A23403G

EPI_ISL_451676 LR824240
 2020-03-13 2020-05-25
 Switzerland 100084
 C241T C3037T C14408T T22372Y A23403G

EPI_ISL_451677 LR824238
 2020-03-13 2020-05-25
 Switzerland 100085
 C241T C3037T C6040T C9891Y C14408T A19298W T19482K G19542K A22368W A23403G

EPI_ISL_451678 LR824247
 2020-03-13 2020-05-25
 Switzerland 100086
 C241T C3037T C14408T C15324T C22347S C22498M A23403G G28690K C29733Y

EPI_ISL_451682 LR824249
 2020-03-13 2020-05-25
 Switzerland 100090
 C241T C1059T C3037T G11083T C14408T C16616T G22363K A23403G G25563T

EPI_ISL_451683 LR824248
 2020-03-13 2020-05-25
 Switzerland 100091
 C241T C3037T C14408T C15324T G22361K A23403G G28373T

EPI_ISL_451684 LR824250
 2020-03-13 2020-05-25
 Switzerland 100092
 C241T C643Y C3037T C3787T C3924Y C14408T C15251Y C15324T A19298W T19350Y T19456Y T19473W T19482K T19497W A22394R A23403G C27503Y G29779K

EPI_ISL_451685 LR824251
 2020-03-13 2020-05-25
 Switzerland 100093
 C241T C3037T C5175Y C14408T C15324T A19298W A23403G C23551Y

EPI_ISL_451689 LR824241
 2020-03-13 2020-05-25
 Switzerland 100097
 C241T C1059T C1824Y C3037T C14408T A17631M A19298W T19344Y A19357R C19366Y G19486S A19535R A23403G G25563T

EPI_ISL_451691 LR824244
 2020-03-13 2020-05-25
 Switzerland 100099
 C241T C3037T C14408T T19839C A22488R T22516W A23403G GGG28881AAC

EPI_ISL_452118 MT512446
 2020-03-13 2020-05-26
 United States SARS-CoV-2/human/USA/AZ-CDC-1911/2020
 C241T C1059T C3037T C13297T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452320
 2020-03-13 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20446/2020
 C241T G960R C1059T C3037T C4202T C14408T A23403G G25563T C28289Y

EPI_ISL_452327
 2020-03-13 2020-05-27
 China hCoV-19/Beijing/DT-travelAT01/2020
 C241T C1059T C3037T T8022G C14408T T19299G T20891G A23403G G25217T G25563T

EPI_ISL_452329
 2020-03-13 2020-05-27
 China hCoV-19/Beijing/DT-travelDE01/2020
 

EPI_ISL_452459
 2020-03-13 2020-05-27
 Spain hCoV-19/Spain/COV001889/2020
 C2676T C8782T G11083T C11620T C19263T G21770R C26088T T28144C

EPI_ISL_454011
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C2143T C8782T T9477A C14805T G25785T G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454012
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C2143T C8782T T9477A C14805T G25785T G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454013
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C2143T C8782T T9477A C14805T G25785T G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454014
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454223
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G16744A A20268G G21190A A23403G T26301G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454329
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C19374T C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454330
 2020-03-13 2020-05-28
 Portugal hCoV-19/Portugal/PT0607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454526
 2020-03-13 2020-05-28
 India hCoV-19/India/NIV-1804/2020
 G1397A A3039G G11083T A18052G A25596G T28688C A28795G G29742T A29827T G29830C

EPI_ISL_454527
 2020-03-13 2020-05-28
 India hCoV-19/India/NIV-2387/2020
 C241T C3037T C14408T A23403G A26530G G26690T G29830T

EPI_ISL_454759
 2020-03-13 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10010/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C20844T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_454941
 2020-03-13 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-179/2020
 

EPI_ISL_455355 MT539162 MW008562
 2020-03-13 2020-05-29
 United States SARS-CoV-2/human/USA/GA-EHC-009I/2020
 ATTAAA1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_455378
 2020-03-13 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-178/2020
 T953C TG14865- C22482T T25382C

EPI_ISL_455379
 2020-03-13 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-180/2020
 AG14463-

EPI_ISL_455434
 2020-03-13 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_10/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A20755C A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_455445
 2020-03-13 2020-05-29
 Poland hCoV-19/Poland/PL_P32/2020
 C241T C3037T G4255T C14408T A20355G A23403G A26530G C29642T

EPI_ISL_455446
 2020-03-13 2020-05-29
 Poland hCoV-19/Poland/PL_P33/2020
 C241T C3037T G4255T C14408T A20355G A23403G A26530G C29642T

EPI_ISL_455587
 2020-03-13 2020-06-01
 Thailand hCoV-19/Thailand/Nakhonnayok_2829/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_455607
 2020-03-13 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok_2489/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_455927
 2020-03-13 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0133/2020
 ATTAAAGGTTT1- C2708T C6312A G11083T C13730T C23929T C28311T

EPI_ISL_455931
 2020-03-13 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A895G C2942T G4390T C8782T C9598T G20134T G21296A G24047A G27877T T28144C AAAAAA29898-

EPI_ISL_457805 MT646075
 2020-03-13 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00063/2020
 C6312A G11083T C11455T C13730T C23929T C28311T

EPI_ISL_460253 MT520328
 2020-03-13 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00514/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460665
 2020-03-13 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2755A C3037T ATGTAGACAATTCTA6561- C14408T C15324T G22616T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461115
 2020-03-13 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17125T T17247C G26144T G27201T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462477
 2020-03-13 2020-06-08
 Spain hCoV-19/Spain/Andalucia202659/2020
 A8621G C8782T TG8827AT T9477A A10181G T11110A C13059T C14805T G14997T A15954G T16167A G25720A -26532A C26681T T28144C C28657T C28863T

EPI_ISL_463970
 2020-03-13 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T G19469K A23403G G25217T G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_463988
 2020-03-13 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S5/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_463993
 2020-03-13 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S7/2020
 ATTAAAG1- T490A C3177T C8782T C16260T T18736C C24034T T26729C G28077C T28144C A29700G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_464908
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20118039804/2020
 G1440A G2891R C10336Y C13423T A27669G

EPI_ISL_464923
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20118050804/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_464957
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20118112104/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_464997
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20118176104/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_465036
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20119026204/2020
 A2480G C2558T G11083T C14805T C16349Y C18877T G26144T

EPI_ISL_465059
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20119041204/2020
 A2480G C2558T G11083T A14185T C14805T G26144T

EPI_ISL_465079
 2020-03-13 2020-06-11
 United Kingdom hCoV-19/England/20119057204/2020
 A1515G C9223T G11083T C14805T T17247C A21625G G26144T C27972T

EPI_ISL_467105
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001575/2020
 C8782T T9477A C14805T A23586G G25979T T28144C C28657T T28705C C28863T

EPI_ISL_467124
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001580/2020
 C241T C3037T C14408T A20268G A23403G C28854T C29870A

EPI_ISL_467136
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001585/2020
 C8782T T9477A C14805T C21997T G25979T T28144C C28657T C28863T

EPI_ISL_467142
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001594/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467156
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001577/2020
 C5730Y C8782T T9477A C14805T C16163Y G25979T G26769K C27526M T28144C C28657T C28863T C29870A

EPI_ISL_467159
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001528/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467160
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001598/2020
 C4012T C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467175
 2020-03-13 2020-06-12
 Spain hCoV-19/Spain/COV001604/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467430
 2020-03-13 2020-06-14
 China hCoV-19/Harbin/HRB-25/2020
 C2401T G23236T C23525T G29449T AAAAAAAAAA29894-

EPI_ISL_467832 MT614464
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C379A C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467839 MT614471
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A652G C1059T C1387T C3037T C14408T A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467844 MT614527
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/FL-QDX-121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467845 MT614528
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/GA-QDX-115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467846 MT614529
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/GA-QDX-116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T C26681T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467847 MT614530
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/GA-QDX-122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467848 MT614561
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/GA-QDX-152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467849 MT614476
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/GA-QDX-53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C16466T T18736C C21575T C24034T T26729C G28077C T28144C C28849T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467851 MT614532
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467867 MT614536
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/MD-QDX-113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G C23895T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467868 MT614488
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/MI-QDX-26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467874 MT614537
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467876 MT614539
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C14408T C18877T G20014T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467878 MT614541
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2497G C3037T C14408T A22666G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467902 MT614504
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C14408T C14585T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467905 MT614555
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/TN-QDX-126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467909 MT614556
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2840A G5572T C8782T C17747T A17858G C18060T A26045G T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467910 MT614557
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T18736C G19967T C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467911 MT614558
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C16308T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467912 MT614559
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467913 MT614560
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22450T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467918 MT614513
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11878A C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467919 MT614514
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467921 MT614516
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467924 MT614519
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/UT-QDX-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467926 MT614521
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/WA-QDX-22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467927 MT614522
 2020-03-13 2020-06-15
 United States SARS-CoV-2/human/USA/WA-QDX-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4790A C8782T C18060T T28144C G28907T A29824G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467960
 2020-03-13 2020-06-16
 United States hCoV-19/USA/CA-SR0430/2020
 C241T C1059T A2018G C3037T C14408T A23403G G25563T

EPI_ISL_468388 MT628124
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1413/2020
 C241T C379A C1059T C3037T C14408T A23403G G25012A G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468507 MT628230
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1576/2020
 C4776T A6867G C8782T C17747Y A17858G C18060T G28086T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468560 MT627407
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-101/2020
 C241T C379A C1059T C3037T C7039T C14408T A23403G G25563T

EPI_ISL_468561 MT627408
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-103/2020
 A187G C241T C3037T C14408T A23403G C25916T

EPI_ISL_468562 MT627409
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-110/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T

EPI_ISL_468563 MT627410
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-111/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_468564 MT627411
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-83/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T

EPI_ISL_468565 MT627412
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-84/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_468566 MT627413
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-86/2020
 C241T C3037T C14408T A23403G

EPI_ISL_468567 MT627414
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-92/2020
 C4115T C8782T C17747T A17858G C18060T A22005G C25046T T28144C

EPI_ISL_468568 MT627415
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-97/2020
 C241T C3037T C14408T C19488T A23403G C28826T GGG28881AAC

EPI_ISL_468569 MT627416
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-QDX-98/2020
 C241T C1059T A2165G C3037T C14408T A23403G G25563T G29711T

EPI_ISL_468571 MT627418
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/CO-QDX-107/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468588 MT627435
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/NY-QDX-96/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_468589 MT627436
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/OK-QDX-93/2020
 AAGTCATTT686- C14925T

EPI_ISL_468590 MT627437
 2020-03-13 2020-06-16
 United States SARS-CoV-2/human/USA/WA-QDX-104/2020
 ATT1- T137C A4590G C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_468738
 2020-03-13 2020-06-17
 Belgium hCoV-19/Belgium/UGent-90/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468739
 2020-03-13 2020-06-17
 Belgium hCoV-19/Belgium/UGent-91/2020
 C241T C3037T C4809T G12092T C14408T A23403G

EPI_ISL_468740
 2020-03-13 2020-06-17
 Belgium hCoV-19/Belgium/UGent-92/2020
 C241T C3037T G4255T C14408T A23403G A26530G

EPI_ISL_468741
 2020-03-13 2020-06-17
 Belgium hCoV-19/Belgium/UGent-93/2020
 C241T C1059T C3037T C14408T A23403G A25035G G25563T

EPI_ISL_471230
 2020-03-13 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475086
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50327/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475087
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50335/2020
 C241T C1059T C3037T C8961T C14408T A23403G G24368T G25563T

EPI_ISL_475088
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50336/2020
 C241T C1059T C3037T C9565T C14408T A23403G G24368T G25563T

EPI_ISL_475089
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50337/2020
 C241T C3037T C14408T C20384T A23403G C27046T GGG28881AAC A29442T

EPI_ISL_475090
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50341/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475091
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50342/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475136
 2020-03-13 2020-06-23
 Sweden hCoV-19/Sweden/20-50320/2020
 G1440A G2891A C7011T G28812T

EPI_ISL_475855
 2020-03-13 2020-06-25
 Austria hCoV-19/Austria/CeMM0427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476782
 2020-03-13 2020-06-25
 United States hCoV-19/USA/CA-CZB-1765/2020
 ATTAAA1- C241T C3037T C14408T A20268G G22249T A23403R AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_476783
 2020-03-13 2020-06-25
 United States hCoV-19/USA/CA-CZB-1766/2020
 ATTA1- C8782T C17747T A17858G C18060T A24694T G28086T T28144C A29878M

EPI_ISL_476784
 2020-03-13 2020-06-25
 United States hCoV-19/USA/CA-CZB-1767/2020
 G10642T C11074T G11083T C14805T T17247C G26144T

EPI_ISL_476814
 2020-03-13 2020-06-26
 Singapore hCoV-19/Singapore/478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476907 MT827827
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_476908 MT827843
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C1469T G11083T C14805T T17247C G26144T G29254T TG29867AA C29870A

EPI_ISL_476915 MT827845
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-650/2020
 ATTAAAGGTTT1- G116C C241T C3037T C14408T A23403G GGG28881AAC TG29867AA C29870A

EPI_ISL_476916 MT827833
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-651/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G GGG28881AAC -29904AAAAAAAAAAAAAAA

EPI_ISL_476917 MT827842
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGC1- C241T C1059T A2018G C3037T C14408T A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_476918 MT827834
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/CT-UW-653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- AC35WT C241T C3037T C14408T A23403G GGG28881AAC -29904AAAAAAAAAAAAAA

EPI_ISL_476921 MT827829
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-662/2020
 ATTAAAGG1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_476928 MT827828
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-676/2020
 A1- AC35TT C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_476930 MT827817
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCT1- C5467T C8782T C17747T A17858G C18060T T28144C C29119T -29904AAAAAAAAAAAA

EPI_ISL_476933 MT827821
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- G4510T C8782T C17747T A17858G C18060T G27906T T28144C -29904AAAAAAAAAAAAAA

EPI_ISL_476935 MT827810
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C6285T C8782T C17747T A17858G C18060T G27364T T28144C

EPI_ISL_476938 MT827840
 2020-03-13 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-864/2020
 A1- C36T C140T TAG4879- C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_479878
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C5787T C11752T C19170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479896
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C10833T C14408T C18877T A23403G G25563T C26735T TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_479897
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C10833T C14408T C18877T A23403G G25563T C26735T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479904
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C3656T C8782T G16381A T17877C T28144C G28878A G29742A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_479932
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0241/2020
 ATTAAAGGTTT1- T4402C G5062T C8782T G12070T T28144C G29742T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480002
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C TTTGGGTGTTTA21982- T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480104
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C4784T C8782T G16381A T17877C T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480105
 2020-03-13 2020-07-01
 Japan hCoV-19/Japan/PG-0440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C8782T G16381A T17877C T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480959
 2020-03-13 2020-07-02
 Spain hCoV-19/Spain/Donostia-San_Sebastian_COV003214/2020
 C8782T T9477A C14805T G25979T G28109T T28144C C28657T C28863T C29025Y

EPI_ISL_481549
 2020-03-13 2020-07-03
 Finland hCoV-19/Finland/13M6S4/2020
 C241T C3037T C5512T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482484
 2020-03-13 2020-07-03
 Canada hCoV-19/Canada/MB_80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_483545
 2020-03-13 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C G21761T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_484189
 2020-03-13 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265E34A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485002
 2020-03-13 2020-07-09
 South Korea hCoV-19/South Korea/A3/2020
 ATTAAA1- T4402C G5062T C8782T G17814T T28144C A29903-

EPI_ISL_485835 MT739441 MT913054
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0534/2020
 ATTA1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_485836 MT739442 MT913055
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T A23403G G25563T G28968T G29688T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_485839 MT739445 MT913058
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T C17747T A17858G C18060T C18486T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_485846 MT739452 MT913065
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_485852 MT739458 MT913071
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0551/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T G28086T AA29902-

EPI_ISL_485855 MT739461 MT913074
 2020-03-13 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0554/2020
 ATTAAAGGTTTATACCT1- C6027T A10236G G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_486105
 2020-03-13 2020-07-10
 United States hCoV-19/USA/WA-UW-682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- A8539T C8782T T15927G C17747T A17858G C18060T C26936T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486106
 2020-03-13 2020-07-10
 United States hCoV-19/USA/WA-UW-688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- -65TNNN C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486427 MT738101
 2020-03-13 2020-07-09
 Brazil SARS-CoV-2/human/BRA/HIAE-SP03/2020
 C241T C3037T T7168C C11022T C14408T A23403G C25904T T27299C GGG28881AAC T29148C

EPI_ISL_488273
 2020-03-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F7BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488758
 2020-03-13 2020-07-14
 United Kingdom hCoV-19/England/NORT-2813B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7072T A8072G T10057C C14408T C16329T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488791
 2020-03-13 2020-07-14
 United Kingdom hCoV-19/England/NORT-2841D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488820
 2020-03-13 2020-07-14
 United Kingdom hCoV-19/England/NORT-2841A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488834
 2020-03-13 2020-07-14
 United Kingdom hCoV-19/England/NORT-281384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6726T G11083T C14805T G15444T A17205G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492332
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18545A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492557
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2416Y A2480G C2558T C2706T A7025G C9724T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492619
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2706T A7025G C9724T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492630
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1309CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A21625G G26144T G29427K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492675
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G G25552T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492719
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1309DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A21625G G26144T G29427K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492726
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130ADB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC A29078G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492730
 2020-03-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130AEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC A29078G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497831
 2020-03-13 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499814
 2020-03-13 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4AF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- G18315A

EPI_ISL_500064
 2020-03-13 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4A6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T A13623T C14805T C25568T G26144T

EPI_ISL_500071
 2020-03-13 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4AE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G A26530R T27280C

EPI_ISL_500088
 2020-03-13 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4DAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T C14805T G26144T

EPI_ISL_500598
 2020-03-13 2020-07-29
 Australia hCoV-19/Australia/NSW2011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G4255A G9431T C10319T G11083T C16466T G19117A A20047G T28688C G29742T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500628
 2020-03-13 2020-07-29
 Australia hCoV-19/Australia/NSW2147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G29348T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507030 MT820488
 2020-03-13 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCA1- C241T C3037T C14408T C18877T A23403G G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507050
 2020-03-13 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D08A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C7279T G11083T C14805T G26144T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_508769 MT834611
 2020-03-13 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C16457T C17747T A17858G C18060T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508772 MT834614
 2020-03-13 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0568/2020
 ATTAAAGGTTTATACC1- G599A C7162T C8782T C16457T C17747T A17858G C18060T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508874
 2020-03-13 2020-08-04
 France hCoV-19/France/ARA08589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25563T C26013T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508948
 2020-03-13 2020-08-04
 France hCoV-19/France/ARA08417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509695 MT844047
 2020-03-13 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1227/2020
 C241T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509716 MT846420
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0658/2020
 ATT1- C1191T C8782T C17747T A17858G C18060T G25445T A28081G T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_509718 MT846422
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0660/2020
 ATTAA1- C8782T C16457T C17747T A17858G C18060T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509724 MT846428
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0666/2020
 ATTA1- C241T C3037T T6294C C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509725 MT846429
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0667/2020
 AT1- C241T C3037T T6294C C14408T A20268G A23403G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_509726 MT846430
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C4002T C6543T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G28908T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_509727 MT846431
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0669/2020
 ATTA1- C241T C3037T C5467T C8389T C14408T A23403G G24050T G25563T C26191T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509728 MT846432
 2020-03-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0670/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_510269
 2020-03-13 2020-08-06
 Spain hCoV-19/Spain/COV004027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C18084T T18630C C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510312
 2020-03-13 2020-08-06
 Spain hCoV-19/Spain/COV005003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G G29734C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510328
 2020-03-13 2020-08-06
 Spain hCoV-19/Spain/COV005019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T G17814T A19810G A20268G A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_513416 MT886290
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513418 MT886292
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T C3037T C14408T C22450T A23403G AATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29814-

EPI_ISL_513420 MT886294
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513423 MT886297
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTG1- C241T C3037T C14408T C17550T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513427 MT886301
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- G1440A G2891A C7011T C12876T G25593C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513432 MT886306
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513434 MT886308
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513435 MT886309
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513464 MT886338
 2020-03-13 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- A5317G C8782T C17747T A17858G C18060T A19476G T28144C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_516267
 2020-03-13 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C11109T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517770
 2020-03-13 2020-08-24
 Peru hCoV-19/Peru/INS-061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179K ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_523960
 2020-03-13 2020-08-27
 Moldova hCoV-19/Moldova/ChVir7768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G G29737T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_523994
 2020-03-13 2020-08-27
 Peru hCoV-19/Peru/LAM-INS-073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C313T C936T C3037T C14408T C17333T A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_524665
 2020-03-13 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525613
 2020-03-13 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-14811-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T T10771C C17747T A17858G C18060T T28144C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526938
 2020-03-13 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_526939
 2020-03-13 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T C25511T G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_526940
 2020-03-13 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1302T C3037T C6196T C14408T A23403G G25563T C25708T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_528039
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42188884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T T21715G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528040
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528041
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G C28344T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528042
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528043
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G5008T C14408T C15324T G18525T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528044
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5979T C14408T C15324T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528045
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C18486T G29032A G29616T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528046
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_528047
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528048
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4300T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528049
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C14408T A20268G A23403G C28854T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528050
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528051
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528052
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T5941A C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528053
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G12832A C14408T T18087A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528054
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528055
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42189866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528056
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42189907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528057
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_528059
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528061
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C15588T C15810T A23403G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_528063
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528064
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42190253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528065
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42190269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G T25414C G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528066
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G5539A C14408T C15324T A23403G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_528067
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528068
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528069
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190359/2020
 ATTAAAGGT1- C241T C3037T C14408T C15324T C17977G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528070
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T5941A C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528073
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42190581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C6696T C11001T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528077
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42190803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528079
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42190921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C21110T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528107
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G G28373T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528113
 2020-03-13 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T514C ATG1605- C17410T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_530034
 2020-03-13 2020-09-10
 Spain hCoV-19/Spain/MD-LP106-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534986
 2020-03-13 2020-09-14
 United Kingdom hCoV-19/England/OXON-B49E2/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC AAAAAAAAA29895-

EPI_ISL_535020
 2020-03-13 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4EA7/2020
 C241T C3037T T8672C C14408T A23403G G25429T C26461T

EPI_ISL_535746
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535752
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535753
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216909/2020
 ATTAAA1- C241T C1059T C3037T C14408T A18487W T19381Y A19758R A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535755
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00216993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T C18657T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535756
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535757
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G G25455T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535758
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535759
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535760
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTTATG515- AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535761
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535762
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535763
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535765
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15202T T22288A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535767
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9874G C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535768
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00217833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9874G C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535808
 2020-03-13 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00221391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536437
 2020-03-13 2020-09-16
 Singapore hCoV-19/Singapore/896/2020
 ATTAA1- C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_536545
 2020-03-13 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-150/2020
 ATTAAAG1- G11083T C14805T T17247C G26144T

EPI_ISL_537578
 2020-03-13 2020-09-16
 United States hCoV-19/USA/CA-UCLA-49/2020
 ATTAAAGGTTTATA1- C21T C241T C313T C3037T C14408T A23403G GGG28881AAC GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_539496
 2020-03-13 2020-09-18
 Andorra hCoV-19/Andorra/202552/2020
 C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_539523
 2020-03-13 2020-09-18
 Spain hCoV-19/Spain/CL-ISCIII-202362/2020
 ATTAAAG1- C241T C3037T C14408T A20268G A23403G C25731T

EPI_ISL_541371
 2020-03-13 2020-09-22
 Brazil hCoV-19/Brazil/SC-771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A187G C241T TGGTCATGTTATGGT508- C3037T C14408T A23403G GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_547445
 2020-03-13 2020-09-24
 Netherlands hCoV-19/Aruba/AW-RIVM-10101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C9170T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547469
 2020-03-13 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21648T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547470
 2020-03-13 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547557
 2020-03-13 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548246
 2020-03-13 2020-09-25
 Sweden hCoV-19/Sweden/20-08186/2020
 T514C ATG1605- C17410T

EPI_ISL_548354
 2020-03-13 2020-09-26
 United States hCoV-19/USA/CA-CZB-3636/2020
 AT1- C241T C379A C1059T C3037T G11083T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_560622
 2020-03-13 2020-09-29
 France hCoV-19/France/GE8774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568556
 2020-03-13 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-001/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- G3179A C6982T C8782T T28144C G29692K TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

MT452575
 2020-03-13 2020-05-10
 United States SAR-CoV-2/human/USA/WA-QDX-00000002/2020
 G2840A G5572T C8782T C17747T A17858G C18060T A26045G T28144C

MT452576
 2020-03-13 2020-05-10
 United States SAR-CoV-2/human/USA/CA-QDX-00000003/2020
 G4285T C8782T C17747T A17858G C18060T T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

MT459866
 2020-03-13 2020-05-11
 Greece SARS-CoV-2/human/GRC/151_33690/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT509454
 2020-03-13 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT671819
 2020-03-13 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1765/2020
 ATTAAA1- C241T C3037T C14408T A20268G G22249T A23403R AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT671820
 2020-03-13 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1766/2020
 ATTA1- C8782T C17747T A17858G C18060T A24694T G28086T T28144C A29878M

MT671821
 2020-03-13 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1767/2020
 G10642T C11074T G11083T C14805T T17247C G26144T

MT706143
 2020-03-13 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706243
 2020-03-13 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810562
 2020-03-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0430-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2018G C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811164
 2020-03-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0097-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T C21614T A24694T G26929A T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT994884
 2020-03-13 2020-09-13
 United States SARS-CoV-2/human/USA/UF-25/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

MW030214
 2020-03-13 2020-09-22
 Peru SARS-CoV-2/human/PER/covper074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTC1- G11083T C14805T T17247C G26144T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013239
 2020-03-13 2020-06-01
 China hCoV-19/Guangzhou/ID136/2020
 ATTAAAGGTTTATAC1- C241T C3037T G3566A T12436A C14408T C15324T A23403G

EPI_ISL_416478
 2020-03-14 2020-03-22
 Georgia hCoV-19/Georgia/Tb-673/2020
 ATT1- C241T C1059T C1385T C3037T T8566C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416523
 2020-03-14 2020-03-22
 United States hCoV-19/USA/WI-UW-03/2020
 A1- C241T C1059T C3037T T6814C G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_416684 MT252737
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- C5281T C6310T C8782T C17747T A17858G C18060T G27327T T28144C C29445T AAAAAAAA29896-

EPI_ISL_416686
 2020-03-14 2020-03-23
 United States hCoV-19/USA/WA-UW148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C6285T C8782T C17747T A17858G C18060T C20555T G27364T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416687 MT252735
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C8782T C17747T A17858G C18060T T27056C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416688 MT252740
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416689 MT252736
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34CTTT GTT669- C8782T G17158A C17747T A17858G C18060T T28144C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416707 MT252712
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416712 MT252709
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C8782T C17747T A17858G C18060T C23758T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_416714 MT252710
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW176/2020
 ATTAAAGGTTTATACCTT1- C1238T C8782T C17747T A17858G C18060T T28144C T28924C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416718 MT252716
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C8782T T14259C C17747T A17858G C18060T C23758T T28144C G29462T AA29902-

EPI_ISL_416723 MT252717
 2020-03-14 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- A1515G C9223T G11083T C14805T T17247C G26144T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_417359 MT246467
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW210/2020
 ATT1- AACC34TTTA C241T C1059T C3037T T9511C C14408T A23403G G25563T A29903-

EPI_ISL_417360 MT246468
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C8782T A14836G C17747T A17858G C18060T T28144C

EPI_ISL_417361 MT246469
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C8782T C13225T C17747T A17858G C18060T T28144C TG29867AA C29870A

EPI_ISL_417363 MT246471
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW214/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T G2632T C8782T G11083T C17747T A17858G C18060T T27384C T28144C

EPI_ISL_417365 MT246473
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C140T TAG4879- C8782T C17747T A17858G C18060T C19018T T28144C A29869W A29903-

EPI_ISL_417366 MT246474
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW217/2020
 ATTAAAGGTT1- AACC34HTTH G354A G5716T C8782T C17747T A17858G C18060T T28144C AAAAAAAAA29895-

EPI_ISL_417369 MT246477
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C6310T C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAA

EPI_ISL_417370 MT246478
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW221/2020
 ATTAAAGGTTTAT1- C8782T C17747T A17858G C18060T G22984A T27384C T28144C A29903-

EPI_ISL_417378 MT246486
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW229/2020
 ATTAAAG1- G8C TACCTTCCCAGGTAACAAACCAACC13- C6310T C8782T C17747T A17858G C18060T G27327T T28144C AAAA29900-

EPI_ISL_417380 MT246488
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AACC34TTTA C8782T C17747T A17858G C18060T C21575T G22988A T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_417381 MT246489
 2020-03-14 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C8782T C17747T A17858G C18060T G22984A T27384C T28144C C29870A -29904AAAAAAAAAAA

EPI_ISL_417403
 2020-03-14 2020-03-25
 Australia hCoV-19/Australia/NSW48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C6312A G11083T C13730T C23929T C28311T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417407
 2020-03-14 2020-03-25
 Australia hCoV-19/Australia/NSW54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417448 MT251977
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C832T C1545T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_417449 MT251978
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW235/2020
 AT1-B A4D C8782T G14229T C17747T A17858G C18060T T28144C -29904ANA

EPI_ISL_417450 MT251972
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T T28144C T28229G AAAAA29899-

EPI_ISL_417451 MT251973
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW237/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_417453 MT251975
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C3992T C8782T C17747T A17858G C18060T G22984A T27384C G27806A T28144C A29866G GA29868CT

EPI_ISL_417454 MT251976
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW240/2020
 AT29868-H AACC34TTTA C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AA29902-

EPI_ISL_417455 MT251979
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/WA-UW241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAA29891-

EPI_ISL_417464 MT582481
 2020-03-14 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-19/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_417465 MT582480
 2020-03-14 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-20/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417466 MT582479
 2020-03-14 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-21/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417500 MT911556
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/MN56-MDH56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C8782T C14322T C17747T A17858G C18060Y A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417501 MT911557
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/MN57-MDH57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223Y C14805T T17247Y G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417502 MT911558
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/MN58-MDH58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037Y C14408T A23403R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417503 MT911559
 2020-03-14 2020-03-26
 United States SARS-CoV-2/human/USA/MN59-MDH59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4633T C8782T T15927G C17747T A17858G C18060T T21158C C26936T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417509
 2020-03-14 2020-03-27
 United States hCoV-19/USA/WI-UW-16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14786T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417524 MT374107
 2020-03-14 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-11/2020
 A1- C228T G1397A G9479T A9514G G11083T A19818G G26720C G28202T T28688C T28835C G29742T

EPI_ISL_417525 MT374108
 2020-03-14 2020-03-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-12/2020
 AT1- C241T C3037T C14408T A23403G G23856T GGG28881AAC

EPI_ISL_417549
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/171/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417655
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/326/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_417659
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/330/2020
 A2480G C2558T C11074T G11083T C14805T G26144T

EPI_ISL_417663
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/334/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_417665
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/336/2020
 C241T C1059T A2018G C3037T C14408T T21995C A23403G G25563T

EPI_ISL_417725
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/161/2020
 G61T C241T C1059T C3037T G6266A C14408T A23403G G25563T

EPI_ISL_417758
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/164/2020
 C241T C3037T C14408T A23403G A26530G C28775T G29737A

EPI_ISL_417772
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/162/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417775
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/163/2020
 C241T C3037T C14408T A23403G A26530G G29737A

EPI_ISL_417812
 2020-03-14 2020-03-27
 Iceland hCoV-19/Iceland/176/2020
 C151T C241T C3037T C14408T A23403G A26530G

EPI_ISL_418041 MT259248
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/CT-UW256/2020
 ATTAAAGGTTTATAC1- AACC34HTTT C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G

EPI_ISL_418043 MT259250
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTA1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAA29899-

EPI_ISL_418044 MT259251
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW259/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C241T C1059T C3037T C14408T A23403G G25563T C29870M -29904AAAAAAAAAAAAA

EPI_ISL_418045 MT259252
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T C27999T G28077C T28144C A29700G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418055 MT259262
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTG1- C8782T C17747T A17858G C18060T C21646T G22988A T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_418060 MT259267
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW275/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AACC34TTTA T6691C C7843T G11083T A13768G C14805T A15869T T17247C C17639T G19542T G26144T C28915T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418062 MT259269
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW277/2020
 ATTAAA1- AAC34TTT A6424C C8782T G11042T C17747T A17858G C18060T T22207C A24694T T28144C A28283G AAA29901-

EPI_ISL_418066
 2020-03-14 2020-03-28
 United States hCoV-19/USA/WA-UW281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- G8602A C8782T -10255GGTACAGGCTGGTAATGTTCAACTCAGGGTTATTGGACATTCTATGCAAAATTGTGTACTTAAGCTTAGGGTTGATACAGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A10323G C17747T A17858G C18060T G26152A T28144C -29904AAAAANA

EPI_ISL_418069 MT259274
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17747T A17858G C18060T T28144C G28376A AAAAAAAA29896-

EPI_ISL_418070 MT259275
 2020-03-14 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AC35TT C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_418144
 2020-03-14 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-240E8/2020
 A1- G1440A G2891A C25669T G28851T

EPI_ISL_418147
 2020-03-14 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-24121/2020
 AT1- G1440A G2891A C25669T G28851T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_418196
 2020-03-14 2020-03-28
 United States hCoV-19/USA/NY-NYUMC11/2020
 C241T C1059T C3037T C14408T A23403G G25563T G27390C

EPI_ISL_418234
 2020-03-14 2020-03-29
 France hCoV-19/France/IDF2534/2020
 C241T C3037T T8156G C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_418255
 2020-03-14 2020-03-14
 Italy hCoV-19/Italy/TE4925/2020
 C48M C241T C3037T C6573T C14408T G22363T A23403G TC26532WY AAAA29900-

EPI_ISL_418256
 2020-03-14 2020-03-14
 Italy hCoV-19/Italy/TE4880/2020
 T42Y C241T C3037T C14408T A23403G GGG28881AAC AAAAA29899-

EPI_ISL_418258
 2020-03-14 2020-03-14
 Italy hCoV-19/Italy/TE4953/2020
 C48M C241T C3037T C14408T A23403G GGG28881AAC AA29902-

EPI_ISL_418323
 2020-03-14 2020-03-14
 Canada hCoV-19/Canada/ON_PHL3919/2020
 A1- G1397A G11083T T22032C T28688C G29742T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418335
 2020-03-14 2020-03-14
 Canada hCoV-19/Canada/ON_PHL4464/2020
 A1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418373
 2020-03-14 2020-03-14
 Canada hCoV-19/Canada/ON_PHL7590/2020
 A1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418401
 2020-03-14 2020-03-14
 Finland hCoV-19/Finland/14M12/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_418402
 2020-03-14 2020-03-14
 Finland hCoV-19/Finland/14M13/2020
 C241T C3037T C14408T C21843T A23403G C23575T G23587C AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_418403
 2020-03-14 2020-03-14
 Finland hCoV-19/Finland/14M14/2020
 C241T C3037T C14408T A23403G C23575T G23587C AATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29814-

EPI_ISL_418404
 2020-03-14 2020-03-14
 Finland hCoV-19/Finland/14M16/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_418406
 2020-03-14 2020-03-14
 Finland hCoV-19/Finland/14M26/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T AATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29814-

EPI_ISL_418410
 2020-03-14 2020-03-14
 Finland hCoV-19/Finland/14M77/2020
 C241T C3037T C14408T A20268G A23403G TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_418411
 2020-03-14 2020-03-14
 Finland hCoV-19/Finland/14M82/2020
 T514C ATG1605- C14913T C17410T C18647T A21137G G25440T GTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29808-

EPI_ISL_418626
 2020-03-14 2020-03-30
 Belgium hCoV-19/Belgium/ULG-7242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418628
 2020-03-14 2020-03-30
 Belgium hCoV-19/Belgium/ULG-7134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418630
 2020-03-14 2020-03-30
 Belgium hCoV-19/Belgium/ULG-7729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418801
 2020-03-14 2020-03-31
 Australia hCoV-19/Australia/QLDID923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418871 MT263386
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/CT-UW303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C2676T C8782T A22606T T28144C G28878A G29742A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_418878 MT263392
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW310/2020
 ATTAAAGGTTTATACCTTCC1- G23C CT84TC GG90-C C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418880 MT263394
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_418881 MT263395
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW314/2020
 ATTAAA1- C8782T G11083T C17747T A17858G C18060T T28144C T29410C G29557T -29904AAAAAAA

EPI_ISL_418887 MT263400
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- G8602A C8782T C17747T A17858G C18060T G26152A T28144C

EPI_ISL_418895 MT263408
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418898 MT263411
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/CT-UW331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C3037T C9534A C14408T C18877T A23403G G25563T GC28968CT -29904AAAAAAAAAAAAAA

EPI_ISL_418917 MT263430
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- C8782T C17747T A17858G C18060T T28144C C28708T A29869T

EPI_ISL_418924 MT263437
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_418926 MT263439
 2020-03-14 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW359/2020
 ATTAAAGGTTTATAC1- CCCAGGTAACAAACCAA19- CC36TH C241T C1059T C3037T C12809T C14408T A23403G G25563T AAAAAAAA29896-

EPI_ISL_418964 MT334540
 2020-03-14 2020-03-31
 United States SARS-CoV-2/human/USA/UT-00022/2020
 AT1- C241T C1059T C1887T C3037T C14408T A17615G A23403G G24794T G25563T

EPI_ISL_419388 MT911560
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN60-MDH60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T20406W A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419390 MT911561
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN62-MDH62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A6051C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419391 MT911562
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN63-MDH63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419393 MT911564
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN65-MDH65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12970T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419394 MT911565
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN66-MDH66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419395 MT911566
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN67-MDH67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11596T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419396 MT911567
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN68-MDH68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A19492G A23403G GGG28881AAC C29708Y G29810A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419397 MT911568
 2020-03-14 2020-04-02
 United States SARS-CoV-2/human/USA/MN69-MDH69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19101T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837T

EPI_ISL_419541 MT582476
 2020-03-14 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-24/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419568
 2020-03-14 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS0756270/2020
 C241T C3037T C14408T C15324T C16887T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_419579
 2020-03-14 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS2886370/2020
 C241T C3037T C14408T C15324T C16887T A23362R A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_419586
 2020-03-14 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS4134806/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_419607
 2020-03-14 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS9982497/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_419785 MT450985
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC73/2020
 ATTAAAGGTTTA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419789 MT450988
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419790
 2020-03-14 2020-04-03
 Australia hCoV-19/Australia/VIC78/2020
 ATTAAAGG1- ATG1605- C17898T G28237T A29903-

EPI_ISL_419791 MT450989
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC79/2020
 ATTAAAGGTTTATACCT1- C2558T A10081R G11083T C14805T G26144T

EPI_ISL_419792 MT450990
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C2558T G11083T C14805T A21137G G26144T

EPI_ISL_419793 MT450991
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC81/2020
 ATTAAAGGTTT1- C2558T G11083T C14724Y C14805T G26144T

EPI_ISL_419794 MT450992
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC82/2020
 ATTAAAGGTTTATACC1- T211C C2558T G11083T C14805T G23984A G26144T

EPI_ISL_419799 MT450993
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC83/2020
 A1- G11083T C14805T T17247C C23244T G26144T GTACGATCGAGT29747-

EPI_ISL_419803 MT450994
 2020-03-14 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC84/2020
 ATTAAAGGT1- A1515G C9223T G11083T C14805T T17247C T23335A G26144T

EPI_ISL_420531
 2020-03-14 2020-04-06
 Australia hCoV-19/Australia/WA01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1714T C3037T C14408T A23403G C25350T ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_420533
 2020-03-14 2020-04-06
 Australia hCoV-19/Australia/WA03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420538
 2020-03-14 2020-04-06
 Australia hCoV-19/Australia/WA09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- G4436A C8782T C17747T A17858G C18060T A24694T T28144C GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420539
 2020-03-14 2020-04-06
 Australia hCoV-19/Australia/WA10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C G29742T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420903
 2020-03-14 2020-04-07
 Germany hCoV-19/Germany/BAV-V2011395/2020
 A2480G C2558T G11083T A11090T C14805T G17338T C20429T G26144T

EPI_ISL_421191
 2020-03-14 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10013/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_421192
 2020-03-14 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10014/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_421193
 2020-03-14 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10015/2020
 C241T C3037T C4704T C14408T A23403G C29167T

EPI_ISL_421194
 2020-03-14 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10016/2020
 C241T C1059T C3037T C14408T A23403G C23679T G25135T G25563T G28857A

EPI_ISL_421222
 2020-03-14 2020-04-07
 China hCoV-19/Hangzhou/HZCDC6706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421346
 2020-03-14 2020-04-07
 United States hCoV-19/USA/WY-WYPHL004/2020
 C241T C1059T C3037T G10870T C14408T A23403G G25563T

EPI_ISL_421352 MT370919
 2020-03-14 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G10265A C14408T A23403G GGG28881AAC GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_421353 MT370839
 2020-03-14 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G10265A C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421355 MT370854
 2020-03-14 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421365 MT370857
 2020-03-14 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C2676T C8782T A22606T C23525T T28144C G28878A G29742A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421504
 2020-03-14 2020-04-08
 France hCoV-19/France/IDF2536/2020
 C241T G675A C3037T C6539T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421548
 2020-03-14 2020-04-08
 United States hCoV-19/USA/WY-WYPHL011/2020
 C8782T G15199A C17747T A17858G C18060T A27525G T28144C

EPI_ISL_421549
 2020-03-14 2020-04-08
 United States hCoV-19/USA/WY-WYPHL012/2020
 C8782T G15199A C17747T A17858G C18060T A27525G T28144C

EPI_ISL_422411
 2020-03-14 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU08/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422412
 2020-03-14 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU09/2020
 C241T C1059T C3037T C14408T C19524Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422797 LR878130
 2020-03-14 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422798 LR878124
 2020-03-14 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422812 LR878146
 2020-03-14 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422813 LR878134
 2020-03-14 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C8293A C11109T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424173 MT326181
 2020-03-14 2020-04-12
 United States SARS-CoV-2/human/USA/IL-UW-1311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAG1- C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_425473
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF50/2020
 A1515G C9223T G11083T C14697T C14805T T17247C C19017T G26144T

EPI_ISL_425474
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF6F/2020
 T514C ATG1605- C17410T

EPI_ISL_425475
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF7E/2020
 C2558T G11083T C14805T C15960T G20275T G26144T

EPI_ISL_425476
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DF9C/2020
 T514C ATG1605- C17410T

EPI_ISL_425477
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DFAB/2020
 ATG1605- C20270T

EPI_ISL_425647
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425648
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T C6040T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425656
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T C28814G GGG28881AAC C29784T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425668
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T C14805T T17247C G26144T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425780
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C25667T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425782
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5144T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425816
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C9430T C12710T T14313C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425823
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB017/2020
 C241T C1059T C1076T C3037T C14408T A23403G

EPI_ISL_425826
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB020/2020
 C241T C3037T C14408T A23403G

EPI_ISL_425849
 2020-03-14 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB045/2020
 

EPI_ISL_426296
 2020-03-14 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-16080-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C22120T A23403G C23575T G23587C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426310
 2020-03-14 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-15616-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426517
 2020-03-14 2020-04-17
 United States hCoV-19/USA/AZ-TG268913/2020
 C8782T A12334T C17747T A17858G C18060T C20132T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426519
 2020-03-14 2020-04-17
 United States hCoV-19/USA/AZ-TG268917/2020
 C241T C1059T C3037T C14408T C21575T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426528
 2020-03-14 2020-04-17
 United States hCoV-19/USA/AZ-TG269856/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427392
 2020-03-14 2020-04-18
 Taiwan hCoV-19/Taiwan/TSGH-05/2020
 C241T C3037T C14408T A23403G GGG28881AAC -29894AAAAAAAAT

EPI_ISL_427544
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9A05P/2020
 C8782T T10771C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427545
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9A08P/2020
 C241T C3037T C14408T C18877T A23403G G25563T C27603A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427546
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9B05P/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427547
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9B06P/2020
 AT1- C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427548
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9B08P/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871R

EPI_ISL_427549
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9B09P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427550
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9D03P/2020
 A1- C241T C1059T A2015R C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427551
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9E04P/2020
 ATTAAAGGTT1- C241T C1059T C3037T C6896T C14408T A23403G G25483A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427552
 2020-03-14 2020-04-19
 United States hCoV-19/USA/NY-WCMP9G04P/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_428725
 2020-03-14 2020-04-21
 United States hCoV-19/USA/WI-UW-251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13517T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429299
 2020-03-14 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH43/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429812
 2020-03-14 2020-04-24
 Canada hCoV-19/Canada/NS_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429816
 2020-03-14 2020-04-24
 Canada hCoV-19/Canada/NB_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429817
 2020-03-14 2020-04-24
 Canada hCoV-19/Canada/MB_36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429820
 2020-03-14 2020-04-24
 Canada hCoV-19/Canada/MB_39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430155 MT627634
 2020-03-14 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S301/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430183 MT632579
 2020-03-14 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S146/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_430184 MT632500
 2020-03-14 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S147/2020
 C1238T C8782T C17747T A17858G C18060T T28144C T28924C

EPI_ISL_430186 MT632547
 2020-03-14 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S149/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_430187 MT632624
 2020-03-14 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S150/2020
 C8782T T14259C C17747T A17858G C18060T C23758T T28144C G29462T

EPI_ISL_430743
 2020-03-14 2020-04-27
 China hCoV-19/env/Beijing/BJ2452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T G8653T C14408T A23403G A26507T A26530G G27746T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430744
 2020-03-14 2020-04-27
 China hCoV-19/env/Beijing/BJ2454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T G8653T C14408T A23403G A26507T A26530G G27746T CGAT29750- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430745
 2020-03-14 2020-04-27
 China hCoV-19/env/Beijing/BJ2456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T G4255T G8653T C14408T G19566T A23403G A26507T A26530G GTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTTTCAGACTG26779- G27746T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430746
 2020-03-14 2020-04-27
 China hCoV-19/env/Beijing/BJ2460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T G8653T C14408T A23403G A26507T A26530G G27746T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434478
 2020-03-14 2020-04-29
 Greece hCoV-19/Greece/142/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434588
 2020-03-14 2020-04-30
 United States hCoV-19/USA/MD-HP00038/2020
 C241T C337T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434683
 2020-03-14 2020-05-01
 United States hCoV-19/USA/MD-HP00020/2020
 C241T C3037T T9172C A10948G C14408T C16658T A23403G G26730T GGG28881AAC

EPI_ISL_434688
 2020-03-14 2020-05-01
 United States hCoV-19/USA/DC-HP00007/2020
 G204T C241T C1059T C3037T G8676T C14408T A23403G G25563T

EPI_ISL_434701
 2020-03-14 2020-05-01
 Thailand hCoV-19/Thailand/NIH-2472/2020
 ATTAAAGGTTTATACCT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_434703
 2020-03-14 2020-05-01
 Thailand hCoV-19/Thailand/NIH-2489/2020
 ATTAAAGGTTTATACCTT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_434724
 2020-03-14 2020-05-01
 United States hCoV-19/USA/TX-HMH014/2020
 C8782T T9477A C11396T C14805T C22350T G25979T T28144C C28657T C28863T

EPI_ISL_435120
 2020-03-14 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L068/2020
 C884T G1397A G8653T -11075TTT G11083T A19073G G27915T T28688C C29077T G29742T

EPI_ISL_435122
 2020-03-14 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0231/2020
 C884T G1397A G8653T A19073G G27915T T28688C C28868T C29077T G29742T

EPI_ISL_435142
 2020-03-14 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L9766/2020
 G520T C14636T

EPI_ISL_436219
 2020-03-14 2020-05-06
 Spain hCoV-19/Spain/Valencia124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T G26144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436220
 2020-03-14 2020-05-06
 Spain hCoV-19/Spain/Valencia125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436223
 2020-03-14 2020-05-06
 Spain hCoV-19/Spain/Valencia128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_437229
 2020-03-14 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0030/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437251
 2020-03-14 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0052/2020
 C241T C3037T C14408T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_437875 MT459836
 2020-03-14 2020-05-11
 Greece SARS-CoV-2/human/GRC/152_33705/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T G20002T A23403G T23927G C28657T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437878 MT459876
 2020-03-14 2020-05-11
 Greece SARS-CoV-2/human/GRC/208_33922/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC C28887T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437880 MT459878
 2020-03-14 2020-05-11
 Greece SARS-CoV-2/human/GRC/210_33942/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C9039T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437881 MT459880
 2020-03-14 2020-05-11
 Greece SARS-CoV-2/human/GRC/212_34023/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437902 MT459911
 2020-03-14 2020-05-11
 Greece SARS-CoV-2/human/GRC/153_33892/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G23868T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438034
 2020-03-14 2020-05-12
 Austria hCoV-19/Austria/CeMM0193/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438035
 2020-03-14 2020-05-12
 Austria hCoV-19/Austria/CeMM0194/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAA29895-

EPI_ISL_438036
 2020-03-14 2020-05-12
 Austria hCoV-19/Austria/CeMM0195/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_438037
 2020-03-14 2020-05-12
 Austria hCoV-19/Austria/CeMM0196/2020
 C241T C1059T C3037T C14408T A23403G G25563T G27375K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438038
 2020-03-14 2020-05-12
 Austria hCoV-19/Austria/CeMM0197/2020
 C241T C3037T G9526T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438039
 2020-03-14 2020-05-12
 Austria hCoV-19/Austria/CeMM0198/2020
 C241T C3037T C9665Y C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438223
 2020-03-14 2020-05-12
 United States hCoV-19/USA/DC-HP00026/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_440380
 2020-03-14 2020-05-12
 United Kingdom hCoV-19/England/CAMB-74FBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10936Y C14408T A23403G T25202K GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440403
 2020-03-14 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7525B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1348Y ATG1605- A3046R T4917Y T18699K C21575Y T25202K A29771G A29903-

EPI_ISL_441411
 2020-03-14 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1023E6/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444533
 2020-03-14 2020-05-14
 United States hCoV-19/USA/IL-NM023/2020
 C241T C1059T C3037T C3717T C14408T A23403G G25563T

EPI_ISL_444892
 2020-03-14 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-761/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_445097
 2020-03-14 2020-05-15
 United States hCoV-19/USA/CA-SR0098/2020
 C241T C1059T A2018G C3037T C14214T C14408T A23403G G25563T

EPI_ISL_445098
 2020-03-14 2020-05-15
 United States hCoV-19/USA/CA-SR0099/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_445102
 2020-03-14 2020-05-15
 United States hCoV-19/USA/CA-SR0106/2020
 C8782T C17747T A17858G C18060T C21614T A24694T C27223T T28144C C29870A

EPI_ISL_445268
 2020-03-14 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_1/2020
 T2C AAAG4TGCT A14G C241T C3037T C14408T A23403G C25350T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_445270
 2020-03-14 2020-05-15
 Chile hCoV-19/Chile/Temuco_1/2020
 ATTAAAGGTTTA1- C241T C3037T G10265A C14408T A23403G GGG28881AAC G29398T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445285
 2020-03-14 2020-05-15
 Chile hCoV-19/Chile/Valparaiso_2/2020
 TT2-G A5C C241T C3037T A12506R C14408T C18877T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_445303
 2020-03-14 2020-05-15
 Chile hCoV-19/Chile/Santiago_24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- G11083T A12506R C14805T T17247C C22477Y G26144T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_447089 MT506532
 2020-03-14 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20292/2020
 C241T C1059T C3037T C14408T C16428T A23403G G25563T AAAAAAA29897-

EPI_ISL_447093 MT506534
 2020-03-14 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20296/2020
 A6459R GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447107 MT506533
 2020-03-14 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20310/2020
 AAA29901-

EPI_ISL_447640 MT459879
 2020-03-14 2020-05-11
 Greece SARS-CoV-2/human/GRC/211_34005/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450103
 2020-03-14 2020-05-20
 United States hCoV-19/USA/NY-PV09425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450117
 2020-03-14 2020-05-20
 United States hCoV-19/USA/NY-PV09440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTG1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450197
 2020-03-14 2020-05-20
 Thailand hCoV-19/Thailand/Nonthaburi_2520/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_450233
 2020-03-14 2020-05-20
 United States hCoV-19/USA/CA-UCSF-UC41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C8090T G11083T C14805T T17247C G26144T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_450572 MT506201
 2020-03-14 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20361/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450576 MT506205
 2020-03-14 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20365/2020
 C241T C1059T C3037T C14408T A23403G G25563T AA29902-

EPI_ISL_450795 MT507273
 2020-03-14 2020-05-22
 Jamaica SARS-CoV-2/human/JAM/JM-CDC-5836/2020
 A2480G C2558T G11083T C14805T G26144T G28321A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451692 LR824254
 2020-03-14 2020-05-25
 Switzerland 100108
 C241T C1059T C3037T C14408T C16655Y A23403G G25563T G29422K

EPI_ISL_451693 LR824256
 2020-03-14 2020-05-25
 Switzerland 100109
 C241T C3037T C14408T C15324T A16474G C16887T A23403G

EPI_ISL_451961
 2020-03-14 2020-05-26
 Italy hCoV-19/Italy/IZSPB_CL1/2020
 C241T C3037T C14408T C19687T A23403G C26882T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_452287
 2020-03-14 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20413/2020
 T25Y C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_452309
 2020-03-14 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20435/2020
 C241T C1059T C1380T C3037T C14408T A23403G G25563T

EPI_ISL_452316
 2020-03-14 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20442/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_452523
 2020-03-14 2020-05-27
 Spain hCoV-19/Spain/COV001378/2020
 C8782T C26088T T28144C

EPI_ISL_454017
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454019
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454020
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G C27509T GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454021
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G246T C3037T C14408T A23403G G24098T G27703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454022
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G246T C3037T C14408T A23403G G24098T C25714T G27703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454023
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454025
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T G4432T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454026
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T G4300T C14408T G18498T C21575T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454032
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454224
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8109T C14408T G16744A A20268G C20762T G21190A A23403G T26301G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454328
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4002T G10097A C13536T C14408T C20368A A23403G C23731T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454331
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4002T G10097A C13536T C14408T C20368A A23403G C23731T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454332
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454333
 2020-03-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454760
 2020-03-14 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10011/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C850T C6449T C8782T G13617T C26088T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_454761
 2020-03-14 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- T514C ATG1605- G6662A C16762T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_454962
 2020-03-14 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-213/2020
 C4683T C6286T G26144T

EPI_ISL_454978
 2020-03-14 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-237/2020
 G28857A

EPI_ISL_454982
 2020-03-14 2020-05-29
 China hCoV-19/Wuhan/HB-WH6-242/2020
 G26144T

EPI_ISL_455347
 2020-03-14 2020-05-29
 Spain hCoV-19/Spain/Melilla202449/2020
 ATTAAAGGTTTATACC1- C241T C3037T C4058T C14408T A20268G A23403G G28881T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_455348
 2020-03-14 2020-05-29
 Spain hCoV-19/Spain/Melilla202452/2020
 ATTAAAGGTTTATACC1- C241T C3037T C5884T C14408T A18952G A20268G A23403G TAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29823-

EPI_ISL_455438
 2020-03-14 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A20268G A23403G G25183A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_455455
 2020-03-14 2020-05-29
 Mexico hCoV-19/Mexico/CDMX-InDRE_17/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G C27046T GGG28881AAC G29224T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_455585
 2020-03-14 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok_2974/2020
 A895G C2942T G4390T C8782T C9598T C11074T G20134T G24047A T28144C AAAAAAAAAAAA29892-

EPI_ISL_455605
 2020-03-14 2020-06-01
 Thailand hCoV-19/Thailand/Nonthaburi_2472/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_457732
 2020-03-14 2020-06-02
 Italy hCoV-19/Italy/4870/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457768 MT646053
 2020-03-14 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00113/2020
 T490A C3177T C6040T C8782T G12478A T17531C T18736C C24034T A25442G T26729C G28077C T28144C C28896G A29700G

EPI_ISL_457974
 2020-03-14 2020-06-02
 Oman hCoV-19/Oman/RESP-20-2282/2020
 C241T C3037T T10561C C14408T C15324T A23403G

EPI_ISL_460060
 2020-03-14 2020-06-05
 United States hCoV-19/USA/MN-MDH-70/2020
 AT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460061
 2020-03-14 2020-06-05
 United States hCoV-19/USA/MN-MDH-71/2020
 AT1-G C241T C3037T A8072G C13384T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_460067
 2020-03-14 2020-06-05
 United States hCoV-19/USA/MN-MDH-83/2020
 ATTA1- T17W C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_460074
 2020-03-14 2020-06-05
 United States hCoV-19/USA/MN-MDH-93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A38R C241T C313T C3037T C14408T -18562A C21005T A23403G -25263T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460347 MT520422
 2020-03-14 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00516/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C2416T C3037T C14408T A23403G C24096A G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_460415 MT520490
 2020-03-14 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C17747T A17858G C18060T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_460768
 2020-03-14 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G23868T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_463971
 2020-03-14 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A20268G A23403G G29734C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_465037
 2020-03-14 2020-06-11
 United Kingdom hCoV-19/England/20119027704/2020
 C241T C3037T G6884R T11638C C14408T A23403G GGG28881AAC C29708T

EPI_ISL_465038
 2020-03-14 2020-06-11
 United Kingdom hCoV-19/England/20119027904/2020
 C241T C3037T C14408T T21895Y A23403G G25429T

EPI_ISL_465043
 2020-03-14 2020-06-11
 United Kingdom hCoV-19/England/20119031304/2020
 C241T C751T C3037T C14408T A23403G

EPI_ISL_465050
 2020-03-14 2020-06-11
 United Kingdom hCoV-19/England/20119034404/2020
 C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_465070
 2020-03-14 2020-06-11
 United Kingdom hCoV-19/England/20119047904/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_465073
 2020-03-14 2020-06-11
 United Kingdom hCoV-19/England/20119049904/2020
 C241T C3037T A13907M C14408T A20268R A23403G C28854Y GGG28881RRS

EPI_ISL_465075
 2020-03-14 2020-06-11
 United Kingdom hCoV-19/England/20119054604/2020
 C241T C3037T T7090K C14408T T22791Y A23403G C25831T GGG28881AAC

EPI_ISL_467104
 2020-03-14 2020-06-12
 Spain hCoV-19/Spain/COV001583/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467147
 2020-03-14 2020-06-12
 Spain hCoV-19/Spain/COV001576/2020
 C8782T T9477A C14805T C16949Y G17350K G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467180
 2020-03-14 2020-06-12
 Spain hCoV-19/Spain/COV001574/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467590
 2020-03-14 2020-06-14
 United States hCoV-19/USA/NM-UNM-00007/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_467591
 2020-03-14 2020-06-14
 United States hCoV-19/USA/NM-UNM-00009/2020
 C241T C1059T C3037T G7743T C8733T C14408T G15372T A23403G G25563T

EPI_ISL_467598
 2020-03-14 2020-06-14
 United States hCoV-19/USA/NM-UNM-00016/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_467850 MT614531
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C8782T T11142C C17747T A17858G C18060T T28144C A29413T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467852 MT614533
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A20268G A23403G C28638T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467853 MT614534
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G12361T C14408T A17399C C18929T A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467854 MT614535
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467856 MT614477
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467857 MT614478
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T G15243T G19962T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467862 MT614483
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C C28717T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467864 MT614485
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1426T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467866 MT614487
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467873 MT614493
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/MI-QDX-71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467881 MT614496
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2018G C3037T C14408T A23403G C25418T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467882 MT614497
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467883 MT614498
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1426T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467908 MT614509
 2020-03-14 2020-06-15
 United States SARS-CoV-2/human/USA/TX-QDX-60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468001
 2020-03-14 2020-06-16
 Australia hCoV-19/Australia/SAP215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_468508 MT628231
 2020-03-14 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1577/2020
 ATTAAAGGT1- C4776T C8782T C17747T A17858G C18060T C21846Y G28086T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468752
 2020-03-14 2020-06-17
 Chile hCoV-19/Chile/Santiago-23741/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_471544
 2020-03-14 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_2312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471969
 2020-03-14 2020-06-23
 United Kingdom hCoV-19/England/EXET-1373AC/2020
 ATG1605- TAGTTTAAAAAT6511- C17898T

EPI_ISL_474859
 2020-03-14 2020-06-23
 Spain hCoV-19/Spain/Granada-COV002867/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_475928
 2020-03-14 2020-06-25
 Austria hCoV-19/Austria/CeMM0581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6352K C14408T A23403G G23675S G25563T GG28882RS CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475954
 2020-03-14 2020-06-25
 Singapore hCoV-19/Singapore/423/2020
 AAAAAAAAAAAA29892-

EPI_ISL_476778
 2020-03-14 2020-06-25
 United States hCoV-19/USA/CA-CZB-1761/2020
 ATTAAAG1- C241T C3037T C14408T T15922Y A23403R AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_476781
 2020-03-14 2020-06-25
 United States hCoV-19/USA/CA-CZB-1764/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T T28144C G29688T

EPI_ISL_476788
 2020-03-14 2020-06-25
 United States hCoV-19/USA/CA-CZB-1771/2020
 ATTAA1- A12298G G29711T

EPI_ISL_476802
 2020-03-14 2020-06-26
 China hCoV-19/Hong Kong/VM20003442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9857T G11083T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_476937 MT827837
 2020-03-14 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-862/2020
 ATTAAAGGT1- C241T C1059T C3037T C12809T C14408T A23403G G25563T -29904AAAAAAAAAAAAAAA

EPI_ISL_476939 MT827824
 2020-03-14 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-865/2020
 ATTAAA1- C1077A C8782T C14898T C17747T A17858G C18060T T28144C TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_479860
 2020-03-14 2020-07-01
 Japan hCoV-19/Japan/PG-0136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C5672T C8782T C13019T G16381A T17877C C27297T T28144C G28878A G29742A TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_479879
 2020-03-14 2020-07-01
 Japan hCoV-19/Japan/PG-0170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C19170A C28819A A29433G TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479880
 2020-03-14 2020-07-01
 Japan hCoV-19/Japan/PG-0171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_479926
 2020-03-14 2020-07-01
 Japan hCoV-19/Japan/PG-0230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480378 MT772545
 2020-03-14 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9520T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481251
 2020-03-14 2020-07-03
 Japan hCoV-19/Japan/NGS-IA-1/2020
 ATTAAA1- C8782T G16381A T17877C T28144C G28878A G29742A

EPI_ISL_482998
 2020-03-14 2020-07-06
 United States hCoV-19/USA/MN-MDH-1277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A20268G A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483548
 2020-03-14 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T G1397A G8653T C10775T G11083T T11974C T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_484700
 2020-03-14 2020-07-08
 Belgium hCoV-19/Belgium/ULG-10212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T G12191T C14408T T15366C T16479C A23403G G24348C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485837 MT739443 MT913056
 2020-03-14 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0536/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T C26768T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485847 MT739453 MT913066
 2020-03-14 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C2416T C3037T C10712T C14408T A15903G A23403G G25563T

EPI_ISL_485851 MT739457 MT913070
 2020-03-14 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T C20703T A23403G GGG28881AAC

EPI_ISL_486114
 2020-03-14 2020-07-10
 United States hCoV-19/USA/WA-UW-909/2020
 T2A C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_488608
 2020-03-14 2020-07-14
 United Kingdom hCoV-19/England/NORT-284196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10165Y C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488826
 2020-03-14 2020-07-14
 United Kingdom hCoV-19/England/NORT-281418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491439
 2020-03-14 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0027/2020
 ATTAAAGGT1- T11A C241T C1059T C3037T C14184T C14408T A23403G G24959T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491441
 2020-03-14 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6696T C10702T C14408T A20268G A23403G C26461T CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_491442
 2020-03-14 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0030/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T G942A C3037T C6696T C14408T A20268G A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_491443
 2020-03-14 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T T1028C C1059T C3037T C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_492515
 2020-03-14 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T G11083T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492547
 2020-03-14 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T G11083T G29543K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492592
 2020-03-14 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130BAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492620
 2020-03-14 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T G11083T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494624
 2020-03-14 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- A3046G C8782T A16467G G16975T C17747T A17858G C18060T C23185T T28144C

EPI_ISL_498017
 2020-03-14 2020-07-26
 South Korea hCoV-19/Korea/KCDC2116/2020
 ATTAAAG1- G5572T G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_498728 MT806789
 2020-03-14 2020-07-27
 United States SARS-CoV-2/human/USA/MI-QDX-216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A5011C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500087
 2020-03-14 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4D8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1623C C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_500092
 2020-03-14 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4E13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G

EPI_ISL_500102
 2020-03-14 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T A28692W TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500103
 2020-03-14 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T A13623T C14805T C25568T G26144T C29870A

EPI_ISL_500107
 2020-03-14 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A50FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_500108
 2020-03-14 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A510A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_500597
 2020-03-14 2020-07-29
 Australia hCoV-19/Australia/NSW2005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G845T C3037T C14408T A23403G A26530G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501564
 2020-03-14 2020-07-31
 United Kingdom hCoV-19/England/BRIS-1310BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T931C ATG1605- T12418C G20024A G26416C G29425A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501593
 2020-03-14 2020-07-31
 United Kingdom hCoV-19/England/BRIS-1310D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A21625G G26144T G29427K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507002
 2020-03-14 2020-08-03
 Singapore hCoV-19/Singapore/31nan/2020
 CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507003
 2020-03-14 2020-08-03
 Singapore hCoV-19/Singapore/758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507004
 2020-03-14 2020-08-03
 Singapore hCoV-19/Singapore/759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507011 MT820462
 2020-03-14 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T GGG28881AAC AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_507720
 2020-03-14 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_508774 MT834616
 2020-03-14 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C19063T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_508775 MT834617
 2020-03-14 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0571/2020
 AT1- C8782T C17747T A17858G C18060T C24240T A24694T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508866
 2020-03-14 2020-08-04
 Switzerland hCoV-19/Switzerland/1000482984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G AGGAGAATG29860- AAAAA29899-

EPI_ISL_508875
 2020-03-14 2020-08-04
 France hCoV-19/France/ARA0873/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25534A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508876
 2020-03-14 2020-08-04
 France hCoV-19/France/ARA08938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509222
 2020-03-14 2020-08-05
 Switzerland hCoV-19/Switzerland/1000503309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509503
 2020-03-14 2020-08-05
 Australia hCoV-19/Australia/NSW2146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509717 MT846421
 2020-03-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0659/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509719 MT846423
 2020-03-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0661/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C27964T C28099T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509721 MT846425
 2020-03-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0663/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509722 MT846426
 2020-03-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0664/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510271
 2020-03-14 2020-08-06
 Spain hCoV-19/Spain/COV004029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510273
 2020-03-14 2020-08-06
 Spain hCoV-19/Spain/COV004032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G C21364T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510275
 2020-03-14 2020-08-06
 Spain hCoV-19/Spain/COV004036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510956
 2020-03-14 2020-08-07
 Portugal hCoV-19/Portugal/PT0697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510958
 2020-03-14 2020-08-07
 Portugal hCoV-19/Portugal/PT0699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3373A C13297T C14408T C20016T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511035
 2020-03-14 2020-08-07
 Portugal hCoV-19/Portugal/PT0776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T721C C3037T C14408T A23403G C25549T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511039
 2020-03-14 2020-08-07
 Portugal hCoV-19/Portugal/PT0780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511437
 2020-03-14 2020-08-07
 Portugal hCoV-19/Portugal/PT1478a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T C21575T A23403G G25563T C28807T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_513419 MT886293
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513422 MT886296
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513424 MT886298
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513425 MT886299
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T G22241T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513426 MT886300
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513429 MT886303
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- A5317G C8782T C17747T T17826C A17858G C18060T A19476G T28144C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513430 MT886304
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T A2439G C3037T T3160C A13901G C14408T A23403G G25563T C26625T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513465 MT886339
 2020-03-14 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_515297
 2020-03-14 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0008/2020
 ATT1- A4803C G11083T C14805T T17247C G20580T G26144T

EPI_ISL_515299
 2020-03-14 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0010/2020
 ATTAAA1- C4999T C5170T C8782T T17673C C17747T A17858G C18060T C26735T T28144C AAA29901-

EPI_ISL_516268
 2020-03-14 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523962
 2020-03-14 2020-08-27
 Moldova hCoV-19/Moldova/ChVir7770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T11012C G11083T G13627T C14805T C15540T G26144T A28338G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_523964
 2020-03-14 2020-08-27
 Moldova hCoV-19/Moldova/ChVir7771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T8749C C14408T C15324T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_524656
 2020-03-14 2020-08-28
 United Kingdom hCoV-19/England/LOND-12602B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4668T G11083T T18669C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524798
 2020-03-14 2020-08-28
 Brazil hCoV-19/Brazil/RN-IEC-162277/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_525206
 2020-03-14 2020-08-28
 Peru hCoV-19/Peru/LAL-INS-064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C8782T C26088T T28144C ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_526941
 2020-03-14 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1302T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_528072
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42190565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C18508T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528074
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C643T C3037T C3787T C14408T C15324T A23403G T27206C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528080
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A642G C763A C3037T C7735T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528081
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C25658T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528082
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528083
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G5572T C8208T C14408T C15324T G20940T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528084
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42190998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1820A A2480G C2558T T8599C G11083T C14805T G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528085
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42190999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_528086
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G G28690T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_528087
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T658C C3037T C14408T A23403G A24862G C28629T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528088
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528089
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528090
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528092
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T G12278T C14805T T17247C G26144T G26730T G29414T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528093
 2020-03-14 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T G12278T C14805T T17247C G26144T G26730T G29414T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_530035
 2020-03-14 2020-09-10
 Spain hCoV-19/Spain/MD-LP106-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12970T C14408T A20268G A23403G C28333T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534797
 2020-03-14 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2B57/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T T8672C C14408T A23403G G25429T C26461T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_535770
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T28417C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535771
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T28417C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535772
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC A29307C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535773
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535774
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3580G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535775
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G10265A C14408T A19830G A23403G C25587T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535776
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G9974A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535777
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535778
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535779
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535780
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T G2659T C3037T C14408T T22078C A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535781
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535783
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535785
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00218559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535786
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T13180C C16084T T18736C C24034T T26729C C26882T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535787
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535788
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535790
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535792
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12885T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535794
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A G10201T C14408T A23403G GGG28881AAC C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535803
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535804
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C6638T C7011T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535805
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATT1080- C3037T C14408T C15324T A23403G G28690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535816
 2020-03-14 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00222448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2659T C3037T C14408T T22078C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536542
 2020-03-14 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-147/2020
 ATTAAAG1- C241T C3037T C14408T T19839C A23403G C27416T GGG28881AAC

EPI_ISL_536552
 2020-03-14 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-159/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_538012
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C5467T C14408T G17140T G17972T A20268G A23403G C24319Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538015
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538017
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC C29585T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538019
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C398T C8782T C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538023
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28471T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_538024
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T1476G C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538025
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G6352T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538030
 2020-03-14 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C17639T A20268G A23403G C28638T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538913
 2020-03-14 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16393Y G22583A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539015
 2020-03-14 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C18486T G22203T G29032A G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541000
 2020-03-14 2020-09-22
 South korea hCoV-19/South Korea/IHC2681/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T C14786T A23403G G25563T G28857A AAAAAAAAAAAAAAAA29888-

EPI_ISL_548978
 2020-03-14 2020-09-28
 Singapore hCoV-19/Singapore/970/2020
 ATT1- AAAAAAAAAAAA29892-

EPI_ISL_548981
 2020-03-14 2020-09-28
 Singapore hCoV-19/Singapore/973/2020
 A1- A7479G G11083T C14805T T17247C C25572T G26144T C28887T AAAAAAAAAAAA29892-

EPI_ISL_548986
 2020-03-14 2020-09-28
 Singapore hCoV-19/Singapore/978/2020
 ATTAAAGGTTTATA1- A29622G AAAAAAAAAAAA29892-

EPI_ISL_549001
 2020-03-14 2020-09-28
 Singapore hCoV-19/Singapore/993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A13947T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_566021
 2020-03-14 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1380T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

MT459858
 2020-03-14 2020-05-11
 Greece SARS-CoV-2/human/GRC/142_33859/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT509453
 2020-03-14 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T C16658T A23403G G26730T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509459
 2020-03-14 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C379A C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509464
 2020-03-14 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1059T C3037T G8676T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509490
 2020-03-14 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT510719
 2020-03-14 2020-05-25
 United States SARS-CoV-2/human/USA/hCoV-19-USA-CA-UCSF-UC41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C8090T G11083T C14805T T17247C G26144T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

MT577015
 2020-03-14 2020-03-14
 India SARS-CoV-2/human/IND/32/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAA29898-

MT670013
 2020-03-14 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-23741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT671815
 2020-03-14 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1761/2020
 ATTAAAG1- C241T C3037T C14408T T15922Y A23403R AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT671818
 2020-03-14 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1764/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T T28144C G29688T

MT671825
 2020-03-14 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1771/2020
 ATTAA1- A12298G G29711T

MT706138
 2020-03-14 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14786T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706244
 2020-03-14 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13517T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT772086
 2020-03-14 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-03/2020
 A1- C241T C1059T C3037T T6814C G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT797765
 2020-03-14 2020-07-24
 United States SARS-CoV-2/human/USA/COVID20-0014/2020
 ATTAAAGGT1- T490A C3177T C6525T C8782T C8956T T18736C C24034T T26729C G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT810508
 2020-03-14 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1499-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A3046G C8782T A16467G G16975T C17747T A17858G C18060T C23185T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811165
 2020-03-14 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0098-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2018G C3037T C14214T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811166
 2020-03-14 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0099-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MW008568
 2020-03-14 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-038L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T490A C3177T C8772T C8782T T18736C C24034T T26729C G28077C T28144C A29700G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

MW030211
 2020-03-14 2020-09-22
 Peru SARS-CoV-2/human/PER/covper071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTC1- C241T C3037T C14408T T19839C A23403G C27416T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030219
 2020-03-14 2020-09-22
 Peru SARS-CoV-2/human/PER/covper083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C14408T A23403G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_415710
 2020-03-15 2020-03-19
 Russia hCoV-19/Russia/StPetersburg-3524/2020
 C241T C3037T A4992C G12995C C14408T A23403G G25563T

EPI_ISL_416489
 2020-03-15 2020-03-22
 United States hCoV-19/USA/WI-UW-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A20268G A23403G C28638T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_416491
 2020-03-15 2020-03-22
 United States hCoV-19/USA/WI-UW-04/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T G15760A A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_416492
 2020-03-15 2020-03-22
 United States hCoV-19/USA/WI-UW-05/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T C14408T G15760A A23403G G25563T G29868T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_416514 MT450925
 2020-03-15 2020-03-22
 Australia SARS-CoV-2/human/AUS/VIC08/2020
 ATTA1- C8782T C17747T A17858G C18060T G25049K T28144C A29869R

EPI_ISL_416538
 2020-03-15 2020-03-23
 New Zealand hCoV-19/New Zealand/20VR0275/2020
 T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_416539
 2020-03-15 2020-03-23
 New Zealand hCoV-19/NewZealand/20VR0276/2020
 C8782T G19684T C24034T C27635T T28144C A29700G

EPI_ISL_416683 MT252738
 2020-03-15 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- AA34HT C37H G4148T C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416685 MT252739
 2020-03-15 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416711 MT252719
 2020-03-15 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW173/2020
 ATTAAAG1- T7582C C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_416713 MT252720
 2020-03-15 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- G373A C8782T C17747T A17858G C18060T G26143T T27384C T28144C G29862R AAAAAAAAAAAA29892-

EPI_ISL_416715 MT252714
 2020-03-15 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_416717 MT252713
 2020-03-15 2020-03-23
 United States SARS-CoV-2/human/USA/WA-UW179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_417020
 2020-03-15 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G C23679T G25563T G28857A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417021
 2020-03-15 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417022
 2020-03-15 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417023
 2020-03-15 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417025
 2020-03-15 2020-03-23
 Belgium hCoV-19/Belgium/ULG-7019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T C9438T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417374 MT246482
 2020-03-15 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C8782T T15927G C17747T A17858G C18060T C19269T C26936T T27722C T28144C AA29902-

EPI_ISL_417376 MT246484
 2020-03-15 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW227/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T C29870M A29903-

EPI_ISL_417377 MT246485
 2020-03-15 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGT1- C8782T C11674T C17747T A17858G C18060T T28144C C28826T TG29867AA C29870A

EPI_ISL_417379 MT246487
 2020-03-15 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW230/2020
 ATTAAAGGTTTATACC1- AACC34HTTH CG197TT TTT200CAG GTC204CGG G208T G210A C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAA29900-

EPI_ISL_417382 MT246490
 2020-03-15 2020-03-25
 United States SARS-CoV-2/human/USA/WA-UW233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AA

EPI_ISL_417467 MT582478
 2020-03-15 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-22/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417505
 2020-03-15 2020-03-26
 United States hCoV-19/USA/WI-UW-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417512
 2020-03-15 2020-03-27
 United States hCoV-19/USA/WI-UW-24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417516
 2020-03-15 2020-03-27
 United States hCoV-19/USA/WI-UW-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12809T C14408T A22524T A23403G T25476C G25563T C26625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417666
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/337/2020
 TAA1603- G2782T C20270T

EPI_ISL_417667
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/338/2020
 C20270T

EPI_ISL_417680
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/177/2020
 C241T C3037T A8203G A10323G C14408T A20268G A23403G G24193T

EPI_ISL_417700
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/173/2020
 C241T C1059T C3037T C13458T C14408T A23403G G25563T

EPI_ISL_417712
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/172/2020
 C241T A1331G C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417737
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/155/2020
 C241T C3037T C14408T C15324T C21575T A23403G

EPI_ISL_417740
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/7/2020
 C241T C3037T C14408T A23403G A26530G G29706T

EPI_ISL_417808
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/165/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417809
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/167/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417813
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/178/2020
 C241T C3037T C14408T G16864A A23403G GGG28881AAC

EPI_ISL_417819
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/192/2020
 C241T C3037T C14408T C15324T C21575T A23403G

EPI_ISL_417864
 2020-03-15 2020-03-27
 Iceland hCoV-19/Iceland/8/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_418009
 2020-03-15 2020-03-28
 Portugal hCoV-19/Portugal/PT0024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C17639T A20268G A23403G G27506T C28638T A29700G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418019
 2020-03-15 2020-03-28
 Portugal hCoV-19/Portugal/PT0034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25273T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418022
 2020-03-15 2020-03-28
 Portugal hCoV-19/Portugal/PT0037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T A13712G C14408T A20676G A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418038 MT259245
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C8782T C17747T A17858G C18060T T28144C -29904ANAVA

EPI_ISL_418064 MT259271
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW279/2020
 ATTAAAGGTTTA1- AACC34CTTT C8782T T15888C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_418067 MT259273
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW282/2020
 ATTAAAGGTTTATACCT1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904ANADA

EPI_ISL_418072 MT259277
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW287/2020
 ATTAAAGGTTTATACCTTC1- AACC34HTTH C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAA29901-

EPI_ISL_418073 MT259278
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW288/2020
 ATTAAA1- A35W C37H C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_418075 MT259280
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCA1- C8782T C10818T C14937T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_418076 MT259281
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A34W C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418077 MT259282
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17747T A17858G C18060T G22988A T28144C AAAAAAAAA29895-

EPI_ISL_418080 MT259285
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- A4236G G11083T C14805T A19137T T25655C G26144T AAAAAAA29897-

EPI_ISL_418081 MT259286
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW296/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T G12111A C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_418082 MT259287
 2020-03-15 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCG1- C8782T C10572T T11538C C17326T C17747T A17858G A17884G C18060T G19645T G23242T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_418136
 2020-03-15 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-23FFB/2020
 ATTAAAGG1- G1440A G2891A C25669T G28851T G29737S AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_418197
 2020-03-15 2020-03-28
 United States hCoV-19/USA/NY-NYUMC12/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T

EPI_ISL_418231
 2020-03-15 2020-03-29
 France hCoV-19/France/HF2496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T C15324T A23403G C24096T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_418232
 2020-03-15 2020-03-29
 France hCoV-19/France/IDF2532/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_418233
 2020-03-15 2020-03-29
 France hCoV-19/France/IDF2533/2020
 ATTAAAGGTTTATACCTTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_418354
 2020-03-15 2020-03-15
 Canada hCoV-19/Canada/ON_PHL4088/2020
 A1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418412
 2020-03-15 2020-03-15
 France hCoV-19/France/ARA094100/2020
 C241T T1270C C3037T C14408T C15324T C16762T A23403G C28818T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418413
 2020-03-15 2020-03-15
 France hCoV-19/France/ARA09428/2020
 C241T C3037T C14408T A23403G G25563T C26013T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_418414
 2020-03-15 2020-03-15
 France hCoV-19/France/ARA09434/2020
 C241T C3037T C14408T C15324T C16762T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418672
 2020-03-15 2020-03-30
 United Kingdom hCoV-19/England/20120002102/2020
 A2480G C2558T C9724T G11083T C14805T C20790T G26144T

EPI_ISL_418677
 2020-03-15 2020-03-30
 United Kingdom hCoV-19/England/20122087702/2020
 A2480G C2558T C7011T C10615Y G11083T G11405A C14805T A19476R C19961Y G26144T C28869T

EPI_ISL_418860 MT359865
 2020-03-15 2020-03-31
 Spain SARS-CoV-2/human/ESP/VH000001133/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_418884 MT263398
 2020-03-15 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW317/2020
 ATTAAAGGTTTATACCTT1- C6310T C8782T C17747T A17858G C18060T G27327T T28144C G28378T GA29868CT A29903-

EPI_ISL_418886 MT263399
 2020-03-15 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW319/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA G1401A C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAA

EPI_ISL_418928 MT263441
 2020-03-15 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCT1- C2094T C8782T C17747T A17858G C18060T T19203C G22984A T27384C T28144C AAAAAA29898-

EPI_ISL_418944 MT263457
 2020-03-15 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C7518T C8782T C17747T A17858G C18060T T23119A A27525G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_418945 MT263458
 2020-03-15 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW378/2020
 ATTAAAGGTTTAT1- AACC34TTTH A6693G C8782T C14877T C17747T A17858G C18060T T28144C A29188T AAAAAAAAA29895-

EPI_ISL_418955 MT263469
 2020-03-15 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C8782T C17747T A17858G C18060T G22984A T27384C T28144C TG29867AA C29870A -29904AAAAAAAAAAAAAAA

EPI_ISL_419542 MT582475
 2020-03-15 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-25/2020
 C241T C1059T C3037T G5861A C10969Y C14408T G15380T A23403G G25563T

EPI_ISL_419543 MT582474
 2020-03-15 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-26/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419544 MT582473
 2020-03-15 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-27/2020
 C241T C1059T C3037T C14408T A23403G G25563T GGG28881RRS G29422K

EPI_ISL_419545 MT582472
 2020-03-15 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-28/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419546 MT582471
 2020-03-15 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-29/2020
 C241T C1059T C3037T C14408T A23403G G25563T T27299Y

EPI_ISL_419548 MT582469
 2020-03-15 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-31/2020
 G210K A2480R C2558Y C3037Y G11083K A12715R C14408Y C14805Y A23403R G26144K GGG28881RRS

EPI_ISL_419549 MT582468
 2020-03-15 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-32/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29422T

EPI_ISL_419564
 2020-03-15 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS0366116/2020
 A187G C241T C3037T C14408T G17014T A23403G C26013T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_419583
 2020-03-15 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS3588186/2020
 C241T CTTAAT2822YWKRMW A2831M C3037T G4255T G5470K C14408T G20995T A23403G A26530G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_419589
 2020-03-15 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS4845603/2020
 C241T C1609Y C3037T C13862T C14408T A23403G C28836T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419597
 2020-03-15 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS7928872/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_419601
 2020-03-15 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS9086704/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_419795 MT450995
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC85/2020
 ATTAAAGGTTTATACCTTCCCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419796 MT450996
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC86/2020
 AT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419797 MT450997
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC87/2020
 ATT1- A2480G C2558T G11083T C14805T C19763T G26144T

EPI_ISL_419798 MT450998
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC88/2020
 ATTA1- A2480G C2558T G11083T C14805T C19763T G26144T

EPI_ISL_419800 MT450999
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC89/2020
 ATTAAAGG1- C241T C3037T C14408T C17104T A20268G A23403G G29734C

EPI_ISL_419801 MT451000
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC90/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A17993G A23403G GGG28881AAC

EPI_ISL_419804 MT451001
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC91/2020
 AT1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_419809 MT451002
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC92/2020
 ATTA1- C241T C3037T C14408T A23403G

EPI_ISL_419836 MT451043
 2020-03-15 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC139/2020
 ATTAAAGGTTTATACC1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_420177
 2020-03-15 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0840/2020
 A2480G C2558T C3619T G11083T C14805T G26144T C26735T C26885T

EPI_ISL_420303
 2020-03-15 2020-04-06
 United States hCoV-19/USA/AK-PHL002/2020
 ATTAAAGGTTTATACC1- C241T C3037T C6504T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_420304
 2020-03-15 2020-04-06
 United States hCoV-19/USA/AK-PHL003/2020
 ATTAAAGGTTTAT1- C241T C3037T C6504T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_420536
 2020-03-15 2020-04-06
 Australia hCoV-19/Australia/WA04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C8782Y C17747T A17858G C18060T A27525G T28144C GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_421221
 2020-03-15 2020-04-07
 China hCoV-19/Hangzhou/HZCDC6789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G9190T G11083T T14034C C14805T C16468T T17247C T19646C C24133T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_421366 MT370874
 2020-03-15 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_421505
 2020-03-15 2020-04-08
 France hCoV-19/France/IDF2548/2020
 C241T C1059T C3037T G5017T C10582T C14408T A23403G G25563T C27059T C29451T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421543
 2020-03-15 2020-04-08
 United States hCoV-19/USA/WY-WYPHL006/2020
 C241T C1059T C3037T G10870T C14408T A23403G G25563T

EPI_ISL_421544
 2020-03-15 2020-04-08
 United States hCoV-19/USA/WY-WYPHL007/2020
 C241T C1059T C3037T G10870T C14408T A23403G G25563T

EPI_ISL_421545
 2020-03-15 2020-04-08
 United States hCoV-19/USA/WY-WYPHL008/2020
 C241T C1059T C3037T G10870T C14408T A23403G G25563T

EPI_ISL_421683
 2020-03-15 2020-04-09
 United States hCoV-19/USA/MN124-MDH124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T T29699Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_422659 LR878200
 2020-03-15 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422815 LR878141
 2020-03-15 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422816 LR878137
 2020-03-15 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422817 LR878144
 2020-03-15 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_424626
 2020-03-15 2020-04-13
 Mexico hCoV-19/Mexico/CDMX-INER_04/2020
 C241T C2940T C3037T T6842A C14408T A23403G T26232C TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_424703
 2020-03-15 2020-04-13
 Sweden hCoV-19/Sweden/RV-FOI-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- ATG1605- C25047T G27706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425501
 2020-03-15 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E12C/2020
 C2558T G11083T C14805T C15960T G20275T G26144T

EPI_ISL_425657
 2020-03-15 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425658
 2020-03-15 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C T19420C G19684T C24034T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425669
 2020-03-15 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T C14805T T17247C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_425850
 2020-03-15 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB046/2020
 C9996T C14805T T17247C C19484T

EPI_ISL_426306
 2020-03-15 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-16004-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426316
 2020-03-15 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-16833-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T CAT29838ATC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426317
 2020-03-15 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-16480-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426319
 2020-03-15 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-16166-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C6573T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_427393
 2020-03-15 2020-04-18
 Taiwan hCoV-19/Taiwan/TSGH-06/2020
 G11083T G14277T G26144T

EPI_ISL_427553
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10A02P/2020
 ATT1- C241T C1059T C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871R

EPI_ISL_427554
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10A05P/2020
 ATTAAAGGTT1- C241T C1059T C2028Y C3037T C14408T C22987G A23403G C25469T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

EPI_ISL_427555
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10A06P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871K

EPI_ISL_427556
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10A12P/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T A1972G C2156T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_427557
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10B03P/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C28821M AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427558
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10B07N/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_427559
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10B08P/2020
 C241T C1059T C3037T C14408T G21452T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427560
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10B11P/2020
 ATT1- C241T C3037T C14408T A23403G A25505C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871M

EPI_ISL_427561
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10B12P/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27005T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427562
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10C03P/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_427563
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10C04P/2020
 C241T C1059T C3037T C14408T A14747G A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427564
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10C09P/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427565
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10C11P/2020
 ATTAAAGGTT1- C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871WG

EPI_ISL_427566
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10D06P/2020
 ATTA1- C241T C1059T C3037T C14408T G23311T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427567
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10D09P/2020
 AT1- C241T C1059T A2254G C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427568
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10D11P/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427569
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10E02P/2020
 ATTAA1- C241T C1059T C2445T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871MG

EPI_ISL_427570
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10E06P/2020
 ATTAA1- C241T C1059T C3037T G9572A C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871MG

EPI_ISL_427571
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10E07P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427572
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10F04P/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427573
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10F06P/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_427574
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10F09P/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

EPI_ISL_427575
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10F10P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427576
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10G05P/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T G23311T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871M

EPI_ISL_427577
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10G06P/2020
 C5730T G11083T C14805T T17247C G18985T G26144T AAAA29871RGGG AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_427578
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10G10P/2020
 T2K C241T C1059T C3037T C7728T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427579
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10G11P/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427580
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10H01P/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_427581
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10H04P/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A14747G A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427582
 2020-03-15 2020-04-19
 United States hCoV-19/USA/NY-WCMP10H08P/2020
 ATTAAAGGTTT1- C241T C3037T C7644T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872G

EPI_ISL_428253
 2020-03-15 2020-04-20
 United States hCoV-19/USA/WI-UW-157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428254
 2020-03-15 2020-04-20
 United States hCoV-19/USA/WI-UW-158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T T15366C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428255
 2020-03-15 2020-04-20
 United States hCoV-19/USA/WI-UW-159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T A6584G G11161A C14408T T15366C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428256
 2020-03-15 2020-04-20
 United States hCoV-19/USA/WI-UW-160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T T15366C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428491
 2020-03-15 2020-04-21
 Taiwan hCoV-19/Taiwan/58/2020
 AT1- C241T C3037T C14408T A23403G G23856T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_429116
 2020-03-15 2020-04-23
 Sweden hCoV-19/Sweden/20-08143/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T T24311C GGG28881AAC

EPI_ISL_429162
 2020-03-15 2020-04-23
 Sweden hCoV-19/Sweden/20-50357/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_429323
 2020-03-15 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH82/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429327
 2020-03-15 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH87/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429328
 2020-03-15 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH88/2020
 ATG1605- A16417G C28253A

EPI_ISL_429329
 2020-03-15 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH89/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29200T

EPI_ISL_429331
 2020-03-15 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH92/2020
 C241T C1059T C1302T C3037T C11074T C14408T A23403G G25563T

EPI_ISL_429813
 2020-03-15 2020-04-24
 Canada hCoV-19/Canada/NS_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A6400G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429814
 2020-03-15 2020-04-24
 Canada hCoV-19/Canada/NS_32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4668T A5094G C26641T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_429815
 2020-03-15 2020-04-24
 Canada hCoV-19/Canada/NL_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6990T C8782T T10771C C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430140 MT627635
 2020-03-15 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S286/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430180 MT632596
 2020-03-15 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S143/2020
 C8782T A11789G C17747T A17858G C18060T T28144C T29633C

EPI_ISL_430181 MT632621
 2020-03-15 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S144/2020
 A3492C C8782T A14199G C17747T A17858G C18060T T28144C

EPI_ISL_430182 MT632591
 2020-03-15 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S145/2020
 C8782T A14199G C17747T A17858G C18060T T28144C

EPI_ISL_431180
 2020-03-15 2020-04-29
 China hCoV-19/Fujian/IM3520002T/2020
 ATTAAAGGTTTATACCTTCC1- A26- C28T C241T C3037T C14408T A23403G G25088T GGG28881AAC -29805A ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_434689
 2020-03-15 2020-05-01
 United States hCoV-19/USA/MD-HP00010/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434718
 2020-03-15 2020-05-01
 United States hCoV-19/USA/TX-HMH07/2020
 C241T C1059T C3037T C14408T G17808T A23403G G25563T C27964T

EPI_ISL_434720
 2020-03-15 2020-05-01
 United States hCoV-19/USA/TX-HMH09/2020
 C1960T C10623T G11083T A12744T C14805T C23707T G25396T G26144T

EPI_ISL_434721
 2020-03-15 2020-05-01
 United States hCoV-19/USA/TX-HMH010/2020
 C241T C313T C3037T G6362A C14408T A23403G GGG28881AAC

EPI_ISL_434725
 2020-03-15 2020-05-01
 United States hCoV-19/USA/TX-HMH015/2020
 C241T C3037T C14408T C15328T A23403G GGG28881AAC

EPI_ISL_435065
 2020-03-15 2020-05-02
 India hCoV-19/India/NCDC-01475/2020
 C241T C3037T A5961R T8022K T13408K C14408T A16281R C18877T A19430R T19432Y C22444T A23403G AG24389MS G25563T C26735T C28854T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_435101
 2020-03-15 2020-05-02
 India hCoV-19/India/NCDC-01441/2020
 C884T G1397A G8653T G11083T T16993C T25461C A27191G T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435108
 2020-03-15 2020-05-02
 India hCoV-19/India/NCDC-01457/2020
 T76A T78K A2480G C2558T C9039M G9939K G11083T C14805T A16281R A17656G T18177W C21575T AG24389MS T25760Y G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435127
 2020-03-15 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L1014/2020
 A18163G

EPI_ISL_435128
 2020-03-15 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L1076/2020
 C241T C3037T G4255T G8653T C14408T A23403G A26507T A26530G G27746T

EPI_ISL_435132
 2020-03-15 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L3779/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_435315
 2020-03-15 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_436224
 2020-03-15 2020-05-06
 Spain hCoV-19/Spain/Valencia129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4105T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437234
 2020-03-15 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0035/2020
 A187G C241T C3037T C14408T A15064C A23403G

EPI_ISL_437584
 2020-03-15 2020-05-11
 United States hCoV-19/USA/CA-SR0199/2020
 A161G C884T G1397A A5742T G8653T A10512G G11083T A12130G C16111T G22745A T28688C G29742T

EPI_ISL_437883 MT459882
 2020-03-15 2020-05-11
 Greece SARS-CoV-2/human/GRC/214_34505/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- ATG1605- C17898T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437977
 2020-03-15 2020-05-12
 Austria hCoV-19/Austria/CeMM0120/2020
 A187G C241T C3037T G13193K C14408T T22521K A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_438040
 2020-03-15 2020-05-12
 Austria hCoV-19/Austria/CeMM0199/2020
 C241T A1140C C3037T C14408T A19652G A20268G T22521K A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_438041
 2020-03-15 2020-05-12
 Austria hCoV-19/Austria/CeMM0200/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438042
 2020-03-15 2020-05-12
 Austria hCoV-19/Austria/CeMM0201/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_438043
 2020-03-15 2020-05-12
 Austria hCoV-19/Austria/CeMM0204/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26428K A29865R AAAAAAAAAAAA29892-

EPI_ISL_438044
 2020-03-15 2020-05-12
 Austria hCoV-19/Austria/CeMM0205/2020
 C241T G285K C3037T G12832A T13227K C14408T C20457Y T22521K A23403G GGG28881AAC G29140K AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_438045
 2020-03-15 2020-05-12
 Austria hCoV-19/Austria/CeMM0206/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC AAA29901-

EPI_ISL_444525
 2020-03-15 2020-05-14
 United States hCoV-19/USA/IL-NM014/2020
 C241T C3037T C14408T G16912T A20268G A23403G

EPI_ISL_444532
 2020-03-15 2020-05-14
 United States hCoV-19/USA/IL-NM022/2020
 C8782T A17858G C18060T A24694T T28144C

EPI_ISL_444550
 2020-03-15 2020-05-14
 United States hCoV-19/USA/IL-NM054/2020
 C241T C1059T C3037T C11916T C14408T A23403G C25413T G25563T C28674T

EPI_ISL_445101
 2020-03-15 2020-05-15
 United States hCoV-19/USA/CA-SR0104/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29253T

EPI_ISL_445269
 2020-03-15 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G C25350T T29512K CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_445272
 2020-03-15 2020-05-15
 Chile hCoV-19/Chile/Valparaiso_1/2020
 ATTAAA1- C241T C934Y C3037T C14408T C15324T A23403G ATG29839GGA GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_445274
 2020-03-15 2020-05-15
 Chile hCoV-19/Chile/Rancagua_2/2020
 ATTAA1- ATG1605- C24034T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_445275
 2020-03-15 2020-05-15
 Chile hCoV-19/Chile/Rancagua_3/2020
 TT2-G C241T C3037T G10265A C14408T A23403G GGG28881AAC G29398T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_445276
 2020-03-15 2020-05-15
 Chile hCoV-19/Chile/Rancagua_4/2020
 A1C AA4GT G8A T10C A12G A14T CT16TC CCCAGGT19A C241T C3037T G10265A C14408T C15154Y A23403G GGG28881AAC G29398T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445304
 2020-03-15 2020-05-15
 Chile hCoV-19/Chile/Santiago_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T G1319A C3037T C8389T A12506R C14408T A23403G G25563T CATGTGATTTTAATA29838T CT29854TC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_447092 MT506537
 2020-03-15 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20295/2020
 C64T C241T C1059T C3037T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_447614
 2020-03-15 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU10/2020
 C241T C3037T T11032K C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_448222
 2020-03-15 2020-05-19
 Vietnam hCoV-19/Vietnam/IBT-14Mar/2020
 ATTAAAGGTTTATACCTTC1- C241T C2416T C3037T A3580G C14408T C17104T A23403G G25563T C26028T C28320T GCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29786-

EPI_ISL_450045
 2020-03-15 2020-05-19
 United States hCoV-19/USA/NY-PV09357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450048
 2020-03-15 2020-05-19
 United States hCoV-19/USA/NY-PV09360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T A23403G C26892T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_450049
 2020-03-15 2020-05-19
 United States hCoV-19/USA/NJ-PV09361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C1059T C3037T G9738T C14408T A23403G G25563T AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_450050
 2020-03-15 2020-05-19
 United States hCoV-19/USA/NY-PV09362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450232
 2020-03-15 2020-05-20
 United States hCoV-19/USA/CA-UCSF-UC40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29747A TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_450509
 2020-03-15 2020-05-21
 Lebanon hCoV-19/Lebanon/S2_759/2020
 CT40AC C241T C3037T C9118T C13381T C14408T A23403G G25563T

EPI_ISL_450580 MT506209
 2020-03-15 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20369/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450606 MT509674
 2020-03-15 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20327/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_450803 MT507281
 2020-03-15 2020-05-22
 United States SARS-CoV-2/human/USA/PA-CDC-9081/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451131
 2020-03-15 2020-05-23
 Australia hCoV-19/Australia/SAP111/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_451722 LR824293
 2020-03-15 2020-05-25
 Switzerland 100138
 C241T C3037T C3373A G3871K G11516A C14408T A19339M T19355W A19548R A22394M C22467M A23403G G24257T GGG28881AAC G29779K

EPI_ISL_451725 LR824282
 2020-03-15 2020-05-25
 Switzerland 100141
 C241T G1355T C3037T A5257W G10097R C10349Y C14408T A19298W G19780R C22347S A23403G C23731T GGG28881AAC

EPI_ISL_452285
 2020-03-15 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20411/2020
 C241T C1059T C3037T C14408T C19185T A23403G G25563T

EPI_ISL_452288
 2020-03-15 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20414/2020
 C241T C1059T C3037T A13453R C14408T A23403G G25563T

EPI_ISL_452347
 2020-03-15 2020-05-27
 China hCoV-19/Beijing/DT-travelGR01/2020
 C241T C3037T A23403G

EPI_ISL_452400
 2020-03-15 2020-05-27
 Spain hCoV-19/Spain/COV001993/2020
 C8782T T9477A C11674Y C14805T G25979T T28144C C28657T C28863T G29402T

EPI_ISL_452516
 2020-03-15 2020-05-27
 Spain hCoV-19/Spain/COV001385/2020
 C241T C3037T A12410G C14408T T19839C A23403G C28775Y GGG28881AAC

EPI_ISL_454029
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7101T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454033
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454035
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T C19269T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454036
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454037
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7221T A8241G A10323G C14408T A23403G G24077T C28013A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454039
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454040
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7101T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454045
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G246T C3037T C14408T A23403G G24098T C25714T G27703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454225
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T9477A C14805T A21694G G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454334
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454335
 2020-03-15 2020-05-28
 Portugal hCoV-19/Portugal/PT0612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454635 MT533232
 2020-03-15 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1277/2020
 AT1- C241T C1059T C3037T A6398C C14408T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_454945
 2020-03-15 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-185/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G10412T C14520A

EPI_ISL_454970
 2020-03-15 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-225/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500-

EPI_ISL_454984
 2020-03-15 2020-05-29
 China hCoV-19/Wuhan/HB-WH6-247/2020
 C7834T

EPI_ISL_455381
 2020-03-15 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-186/2020
 A8302G G10412T G12233T T20965- G27967T T28144C C28394A

EPI_ISL_455395
 2020-03-15 2020-05-29
 China hCoV-19/Wuhan/HB-WH6-241/2020
 G7133T TG14865- A27187G G27396T

EPI_ISL_455398
 2020-03-15 2020-05-29
 China hCoV-19/Wuhan/HB-WH6-245/2020
 G1577- G11083T TTG12909C G26144T

EPI_ISL_455449
 2020-03-15 2020-05-29
 Poland hCoV-19/Poland/PL_P36/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_455939
 2020-03-15 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C

EPI_ISL_455941
 2020-03-15 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A895G C2942T G4390T C8782T C9598T G11083T A11782G A19651M G20134T G24047A T28144C C29741T

EPI_ISL_456127
 2020-03-15 2020-06-02
 Colombia hCoV-19/Colombia/INS-79911/2020
 G11083T A12986G C14805T C16969T C23707T G26144T G28899T

EPI_ISL_456149
 2020-03-15 2020-06-02
 Colombia hCoV-19/Colombia/INS-80123/2020
 C241T C3037T T6067C C14408T A23403G GGG28881AAC

EPI_ISL_456150
 2020-03-15 2020-06-02
 Colombia hCoV-19/Colombia/INS-79965/2020
 C241T C3037T C5812T C14408T A20268G A23403G G24368T

EPI_ISL_457724
 2020-03-15 2020-06-02
 Italy hCoV-19/Italy/4875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- G213K C241T C3037T C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_457792 MT646065
 2020-03-15 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00048/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457807 MT646077
 2020-03-15 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00065/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_457937
 2020-03-15 2020-06-02
 Oman hCoV-19/Oman/RESP-20-1857/2020
 C884T G1397A C7164T G8653T G11083T G13639A T28688C C29421T G29742T

EPI_ISL_457938
 2020-03-15 2020-06-02
 Oman hCoV-19/Oman/RESP-20-1976/2020
 C3099A C8782T C25083T T28144C G28878A G29348A G29742A

EPI_ISL_459857
 2020-03-15 2020-06-04
 Chile hCoV-19/Chile/Independencia-27991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459966
 2020-03-15 2020-06-05
 Morocco hCoV-19/Morocco/6888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10427A C14408T C14786T C20389T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460045
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-103/2020
 ATTAAAGGTTTA1- C8782T A16275G C17747T A17858G C18060T T28144C AAAAAAAA29896-

EPI_ISL_460046
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38R G127T C8782T C17747T A17858G C18060T A24694T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_460047
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C8389T C14408T A23403G G25563T G27915A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_460050
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-125/2020
 ATTA1- C241T C3037T C14408T C16848T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_460051
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_460068
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-84/2020
 ATTAAAGGTTTATACCT1- C8782T C17747T A17858G C18060T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_460069
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T C14408T G20247T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_460072
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-91/2020
 ATTA1- T490A C3177T C8782T C10279T C15960T G17679A T18736C G19684T C24034T T26729C C27635T G28077C T28144C A28874G A29700G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_460073
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-92/2020
 ATTAAA1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_460075
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-94/2020
 ATTAAAGGT1- ATG1605- A1856G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_460076
 2020-03-15 2020-06-05
 United States hCoV-19/USA/MN-MDH-95/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_460816
 2020-03-15 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3924T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_465728
 2020-03-15 2020-06-11
 United Kingdom hCoV-19/England/20120106104/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_465754
 2020-03-15 2020-06-11
 United Kingdom hCoV-19/England/20122032304/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_465757
 2020-03-15 2020-06-11
 United Kingdom hCoV-19/England/20122054604/2020
 C241T C3037T C14408T G21119T A23403G G25429T

EPI_ISL_467152
 2020-03-15 2020-06-12
 Spain hCoV-19/Spain/COV001500/2020
 C241T C3037T C14408T A15002G A20268G A23403G G29734C

EPI_ISL_467608
 2020-03-15 2020-06-14
 United States hCoV-19/USA/NM-UNM-00027/2020
 C241T C313T C3037T A11348G C14408T A23403G GGG28881AAC

EPI_ISL_467812 MT614524
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7765A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467825 MT614457
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A3632G A10260G G11083T C14805T G25218T G26144T C28531T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467827 MT614459
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467828 MT614460
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2018G C3037T T3628C C14408T G19872T A23403G C25549T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467829 MT614461
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4776T C8782T C17747T A17858G C18060T G28086T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467830 MT614462
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A C8139T G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467834 MT614466
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1667G A6950G C8782T G13007A C17747T A17858G C18060T A24694T C25207T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467836 MT614468
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467837 MT614469
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6463T T9172C A10948G C14408T G17427T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467838 MT614470
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T5356C C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467843 MT614475
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1855T C8782T C17747T A17858G C18060T A24694T C26985T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467859 MT614480
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T T10288A C14408T G19398T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467860 MT614481
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467861 MT614482
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467863 MT614484
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21811T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467865 MT614486
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MA-QDX-69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20578T C21575T A23403G A26530G G28739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467869 MT614489
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MI-QDX-28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26313T C27879T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467870 MT614490
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MI-QDX-52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467871 MT614491
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MI-QDX-58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A G922A C3177T C8782T T18736C A22003G C24034T T26729C G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467872 MT614492
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/MI-QDX-70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467877 MT614540
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467879 MT614494
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467884 MT614542
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G21123T A23403G T23986C G25563T G28077C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467888 MT614546
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5148T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467892 MT614550
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467894 MT614552
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6926T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467896 MT614554
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C3294T C14408T C16616T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467898 MT614500
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467899 MT614501
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C8092T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467906 MT614507
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/TX-QDX-25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467907 MT614508
 2020-03-15 2020-06-15
 United States SARS-CoV-2/human/USA/TX-QDX-37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T G29140T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468390 MT628126
 2020-03-15 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1415/2020
 ATT1- C36M C241T C1059T C3037T C14408T A23403G G25563T T29458Y

EPI_ISL_468760
 2020-03-15 2020-06-17
 Chile hCoV-19/Chile/Chillan-25338/2020
 C241T C3037T G10265A C14408T A23403G GGG28881AAC

EPI_ISL_469241 MT630421
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/4637/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A918T G2447T C3037T C14408T C18877T C22444T A23403G T25551C G25563T C26735T C28854T C29541T TTCTT29855WWMWW GG29861RR G29864R TGA29867WSW

EPI_ISL_469242 MT630422
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/42952/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G T25655C C26299T GGG28881AAC TGA29867WSW

EPI_ISL_469243 MT630423
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/85613/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T C16466Y G22468T G28027T T28144C G28878A G29742A ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_469244 MT630424
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/85715/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T C18877T A23403G G25563T C26533T C26735T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_469245 MT630425
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/85790/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC C29200T C29750T TT29858YW GG29861RR G29864R ATGA29866MWRW

EPI_ISL_469246 MT630426
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/85791/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC C29200T C29750T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_469247 MT630427
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/86267/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1191A C3037T C14408T A23403G C23613T C28453T GGG28881AAC G29868S

EPI_ISL_469248 MT630428
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/86327/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC T29859W GG29861RS GAA29864SMM GA29868SW

EPI_ISL_469249 MT630429
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/86650/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C6402T C14408T C18877T A23403G G25563T C26735T G29868S

EPI_ISL_469250 MT630430
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/832279/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C3157T C7006T C14408T C18877T A23403G G25563T C26735T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_469251 MT630431
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/85790C/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC C29200T C29750T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_469252 MT630432
 2020-03-15 2020-06-15
 Saudi Arabia SARS-CoV-2/human/SAU/85791C/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC C29200T C29750T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_470540
 2020-03-15 2020-06-18
 United States hCoV-19/USA/WI-WSLH-200011/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_474960
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6751/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_474965
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5939/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_474969
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6100/2020
 T514C T1606C C17410T C19380T

EPI_ISL_474973
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5853/2020
 C241T C1059T C3037T A8651C C14408T A23403G G25563T

EPI_ISL_474974
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6035/2020
 C241T C3037T A8651C C14408T A23403G G23958C GGG28881AAC

EPI_ISL_474975
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6108/2020
 C241T C3037T C12049T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_474979
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5826/2020
 C313T C8802T C10755T

EPI_ISL_474980
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6005/2020
 G1397A A8651C G11083T C16247T C24865T T28688C G29742T

EPI_ISL_474981
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6140/2020
 C241T C2416T C3037T C14408T C19884T A23403G G25563T C26447A

EPI_ISL_474986
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5856/2020
 T1864G C6312A C13730T A24162G C28311T

EPI_ISL_474987
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6102/2020
 C241T C1059T C3037T G9928A C14408T A23403G G25563T

EPI_ISL_474988
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6118/2020
 A4- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_474992
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6106/2020
 -7T C241T C313T C3037T C14408T A23403G C24809T G28079T GGG28881AAC G29751C

EPI_ISL_474993
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6126/2020
 C241T C1059T C1387T T2128C C3037T C14408T A20755C A23403G G25563T

EPI_ISL_474994
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6131/2020
 C241T C3037T C14408T C15852T C16699T C17249T A23403G C27046T GGG28881AAC A29865G

EPI_ISL_474999
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6104/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475000
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6105/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475001
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6110/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27773G

EPI_ISL_475002
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6132/2020
 T1864G C6312A C13730T C28311T

EPI_ISL_475003
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6136/2020
 C241T C1059T C3037T G4504T A10994G C14408T A23403G G25563T

EPI_ISL_475010
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6112/2020
 C66A C241T C1059T C3037T C4048T C11916T C14408T C17304T C18998T A20755T C22802T A23403G G25563T C28256A G29540A

EPI_ISL_475013
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5908/2020
 C241T C3037T C4321T C14408T A23403G T27212C G27214T GGG28881AAC

EPI_ISL_475014
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5999/2020
 C241T C14408T C17470T C18877T A22805T A23403G G25563T C26088T

EPI_ISL_475015
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6142/2020
 C241T C3037T C14408T C22802A A23403G GGG28881AAC

EPI_ISL_475018
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5936/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25916T

EPI_ISL_475019
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-5991/2020
 C241T C1059T C3037T C5575T C11916T C14408T G15502T C16949T C18998T A23403G G25563T G29540A C29754T

EPI_ISL_475021
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6134/2020
 C241T C3037T T4885C C7851T C14408T C18683T C18877T A21137G C22326T A23403G G25563T

EPI_ISL_475022
 2020-03-15 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6157/2020
 G210T C241T C1059T T1877C C3037T C14408T A20755C A23403G G24095T G25563T

EPI_ISL_476780
 2020-03-15 2020-06-25
 United States hCoV-19/USA/CA-CZB-1763/2020
 AT1-

EPI_ISL_476801
 2020-03-15 2020-06-26
 China hCoV-19/Hong Kong/VM20003443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9857T G11083T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_476816
 2020-03-15 2020-06-26
 Singapore hCoV-19/Singapore/482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476822
 2020-03-15 2020-06-26
 Benin hCoV-19/Benin/197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A80W A82M G86K GTG88SKR C241T C3037T C14408T C15324T G23311T A23403G C29200T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_477291
 2020-03-15 2020-06-29
 United States hCoV-19/USA/MN-MDH-1202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C335T C8782T C17747T A17858G C18060T A24694T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_478536
 2020-03-15 2020-06-30
 United Kingdom hCoV-19/England/NORT-28420C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C21575T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479861
 2020-03-15 2020-07-01
 Japan hCoV-19/Japan/PG-0138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C6312A G11083T C13730T A14273T C23929T C28311T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479881
 2020-03-15 2020-07-01
 Japan hCoV-19/Japan/PG-0172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C11752T C19170A G28975T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_479924
 2020-03-15 2020-07-01
 Japan hCoV-19/Japan/PG-0227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- T4402C G5062T C8782T C16997T T18150C T28144C G29742T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480379 MT772546
 2020-03-15 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T18603C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480380 MT772547
 2020-03-15 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T809A C1059T C3037T C14408T C16017T C16616T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480998
 2020-03-15 2020-07-02
 Spain hCoV-19/Spain/Donostia-San_Sebastian_COV003225/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_482472
 2020-03-15 2020-07-03
 Canada hCoV-19/Canada/NB_55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T T26318C G28979T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482473
 2020-03-15 2020-07-03
 Canada hCoV-19/Canada/NB_56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482475
 2020-03-15 2020-07-03
 Canada hCoV-19/Canada/MB_59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482999
 2020-03-15 2020-07-06
 United States hCoV-19/USA/MN-MDH-1278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G11083T G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483000
 2020-03-15 2020-07-06
 United States hCoV-19/USA/MN-MDH-1279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G G25793T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_483001
 2020-03-15 2020-07-06
 United States hCoV-19/USA/MN-MDH-1280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G127T C8782T A17858G C18060T A24694T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_483546
 2020-03-15 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G2246A C9246T G11083T T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483923
 2020-03-15 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D1D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485848 MT739454 MT913067
 2020-03-15 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0547/2020
 ATTAAAGG1- C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_486422
 2020-03-15 2020-07-10
 Latvia hCoV-19/Latvia/039/2020
 C241T C1059T C3037T C3743T C14408T A23403G T23482C G25563T

EPI_ISL_488628
 2020-03-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-28422A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488707
 2020-03-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-28421B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488749
 2020-03-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-281506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C5170T C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488786
 2020-03-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-281454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488797
 2020-03-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-281463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3621A C14408T A23403G G25429T C27213T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488801
 2020-03-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-281524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491444
 2020-03-15 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C6696T C10702T C14408T A20268G A23403G C26461T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_491445
 2020-03-15 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C6696T C10702T C14408T A20268G A23403G C26461T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_491447
 2020-03-15 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C3037T C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_492978
 2020-03-15 2020-07-20
 Singapore hCoV-19/Singapore/480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493328
 2020-03-15 2020-07-21
 Italy hCoV-19/Italy/INMI16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_494575
 2020-03-15 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1384/2020
 ATTA1- A161G C884T G1397A A5742T G8653T A10512G G11083T A12130G C16111T G22745A T28688C G29742T

EPI_ISL_495610
 2020-03-15 2020-07-23
 United States hCoV-19/USA/MN-MDH-1311/2020
 ATTAAAG1- C241T C3037T A8072G C13384T C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_497796
 2020-03-15 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T G12565T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497850
 2020-03-15 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C23707T A25056G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498018
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2117/2020
 G5572T G11083T G14055T C14805T G26144T

EPI_ISL_498020
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2119/2020
 ATTA1- C2450T G5572T G11083T C14805T G26144T

EPI_ISL_498021
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2120/2020
 G5572T G11083T G13076T G14055T C14805T G26144T

EPI_ISL_498022
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2121/2020
 ATTAAAGGTTTATAC1- G5572T G11083T G14055T C14805T G26144T

EPI_ISL_498023
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G5572T G11083T C14805T G26144T

EPI_ISL_498024
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2123/2020
 ATTA1- C2450T G5572T G11083T C14805T G26144T A29873T

EPI_ISL_498025
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2124/2020
 ATTAA1- C1387T G5572T G11083T C14805T G26144T

EPI_ISL_498026
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2125/2020
 ATT1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_498027
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2126/2020
 ATT1- G5572T G7553A G11083T C14805T C19318T G19919A G26144T G28805T

EPI_ISL_498028
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2127/2020
 AT1- G5572T G11083T G14055T C14805T G26144T

EPI_ISL_498029
 2020-03-15 2020-07-26
 South Korea hCoV-19/Korea/KCDC2128/2020
 ATTA1- A2480G C2558T G11083T C14805T G26144T G27703T

EPI_ISL_499736
 2020-03-15 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G14580T A23403G C29870A

EPI_ISL_499753
 2020-03-15 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A68E6/2020
 ATTAAAG1- G1820A A2480G C2558T T8599C G11083T C14805T G26144T A26759C C29870A

EPI_ISL_499769
 2020-03-15 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6AB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C13862T C14408T T14742A A23403G C25854T C28836T

EPI_ISL_500596
 2020-03-15 2020-07-29
 Australia hCoV-19/Australia/NSW2004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3411T C14408T A23403G C26256T C29668T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507052
 2020-03-15 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D0A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C26534T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_507291
 2020-03-15 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII3524VR4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7851T C8645T C14408T A23403G G25563T C26333T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_508771 MT834613
 2020-03-15 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0567/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_508773 MT834615
 2020-03-15 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G17014T C18877T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508864
 2020-03-15 2020-08-04
 Switzerland hCoV-19/Switzerland/1000482982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508865
 2020-03-15 2020-08-04
 Switzerland hCoV-19/Switzerland/1000482983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T C15324T C22088T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_508867
 2020-03-15 2020-08-04
 Switzerland hCoV-19/Switzerland/1000482985/2020
 A4T C241T C3037T C14408T C15324T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_508868
 2020-03-15 2020-08-04
 Switzerland hCoV-19/Switzerland/1000483258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_508877
 2020-03-15 2020-08-04
 France hCoV-19/France/ARA09178/2020
 ATTAAA1- C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508878
 2020-03-15 2020-08-04
 France hCoV-19/France/ARA09193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTG1- C241T C3037T C14408T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_509501
 2020-03-15 2020-08-05
 Australia hCoV-19/Australia/NSW2142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509502
 2020-03-15 2020-08-05
 Australia hCoV-19/Australia/NSW2143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509504
 2020-03-15 2020-08-05
 Australia hCoV-19/Australia/NSW2152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509618
 2020-03-15 2020-08-05
 Spain hCoV-19/Spain/COV001542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C14805T G23868T G25979T T28144C C28292A C28657T C28863T G29332T C29870A

EPI_ISL_509619
 2020-03-15 2020-08-05
 Spain hCoV-19/Spain/COV001980/2020
 ATTAAAGGTTTA1- G2418A G11083T A16815R G26144T T27991C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509620
 2020-03-15 2020-08-05
 Spain hCoV-19/Spain/COV001981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C11674T C14805T G25979T G27112A T28144C C28657T C28863T G29402T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509621
 2020-03-15 2020-08-05
 Spain hCoV-19/Spain/COV001984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480R C2558Y C6449Y C8782Y G11083K G13617K C14805Y C21614Y G22051K C23280Y G23405R C26088Y G26144K T28144Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509624
 2020-03-15 2020-08-05
 Spain hCoV-19/Spain/COV001989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3704T G11083T C14805T C23707T G26144T T27384C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509696 MT844048
 2020-03-15 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1228/2020
 C241T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509697 MT844049
 2020-03-15 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1230/2020
 C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509698 MT844031
 2020-03-15 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1231/2020
 C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509710 MT844029
 2020-03-15 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1229/2020
 C241T A1388R C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_511040
 2020-03-15 2020-08-07
 Portugal hCoV-19/Portugal/PT0781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511041
 2020-03-15 2020-08-07
 Portugal hCoV-19/Portugal/PT0782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511452
 2020-03-15 2020-08-07
 Portugal hCoV-19/Portugal/PT1493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T A8590G C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511460
 2020-03-15 2020-08-07
 Portugal hCoV-19/Portugal/PT1501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C9711T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511473
 2020-03-15 2020-08-07
 Portugal hCoV-19/Portugal/PT1514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T A13712G C14408T A20676G A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511474
 2020-03-15 2020-08-07
 Portugal hCoV-19/Portugal/PT1515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511893
 2020-03-15 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_0847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A C4655T G8422A G9983A G20578T C21077T C22323T C29546A A29880T

EPI_ISL_513428 MT886302
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513431 MT886305
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513433 MT886307
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513436 MT886310
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513438 MT886312
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C14408T A23403G G25563T C27707T C29253T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513441 MT886315
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C2416T C3037T C4755T C14408T A22525G A23403G G25563T C29774T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513452 MT886326
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- C241T C3037T C14408T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513454 MT886328
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513468 MT886342
 2020-03-15 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514140 MT890277
 2020-03-15 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0794/2020
 AT1- C241T GTTATG515- C3037T C14408T C18877T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_515300
 2020-03-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0013/2020
 ATT1- ATG1605- C5892A C20270T C22264T G26109A A29683T

EPI_ISL_515301
 2020-03-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0014/2020
 AT1- G27358T C27847T G29711T

EPI_ISL_515302
 2020-03-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0015/2020
 ATTAAA1- G27358T C27847T G29711T

EPI_ISL_515303
 2020-03-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0016/2020
 AT1- C8782T C17747T A17858G C18060T C27641T T28144C G29781T

EPI_ISL_515304
 2020-03-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T A10055G C10416T C16247T C17747T A17858G C18060T T28144C

EPI_ISL_515305
 2020-03-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0018/2020
 ATT1- C241T C3037T C14408T C18877T A23403G G25563T G25855T AAAAAA29898-

EPI_ISL_515306
 2020-03-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0019/2020
 ATT1- C241T C1059T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_516269
 2020-03-15 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C8299T C12754T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523470
 2020-03-15 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C4021T C11109T C14408T A23403G G25563T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524651
 2020-03-15 2020-08-28
 United Kingdom hCoV-19/England/LOND-126033D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G370A C3037T C14408T C18877T A23403G G25563T A27262M CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524663
 2020-03-15 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A8207G G11083T C14805T T20000C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524670
 2020-03-15 2020-08-28
 United Kingdom hCoV-19/England/LOND-126034C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T A2480G C2558T G11083T C14805T A19304G G26144T G29260A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524673
 2020-03-15 2020-08-28
 United Kingdom hCoV-19/England/LOND-126035B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T C1912T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525614
 2020-03-15 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-16307-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526943
 2020-03-15 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7834T C14408T G16117T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_527008
 2020-03-15 2020-09-03
 Australia hCoV-19/Australia/NSW2144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T G12565T C14805T T17247C G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528095
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C3037T C14408T A23403G T27653C C28708T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528096
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C17285T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528097
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C17285T G21578T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528099
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528100
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528103
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8964T G9856T G11083T C14805T T17247C C19983T G21604T G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528104
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G C29550T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528105
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G G25996T G28690T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_528106
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528109
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528110
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G2354A C3037T C14408T A23403G T26187C G29162T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528111
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T12739C C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528112
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G5246A C12213T C14408T C15324T A23403G AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_528114
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1102T C2416T C3037T C14408T C21575T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528115
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T C20594T A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528117
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42191950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T G19162T A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528118
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42191965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T C21110T A23403G A23732G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528120
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C643T C3037T C3787T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528121
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G T29014C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528122
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42192025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C7735T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528123
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T10509C C14408T C15324T A23403G C26142T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528124
 2020-03-15 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_530036
 2020-03-15 2020-09-10
 Spain hCoV-19/Spain/MD-LP106-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_535795
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535796
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00219966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17135T C23191T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535797
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535798
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535799
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27919C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535800
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535801
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535802
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22225A A23403G C26801G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535806
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00220933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_535807
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00221340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535810
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00221627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12190C C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535811
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00221852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535817
 2020-03-15 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00222575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23191T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538035
 2020-03-15 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538036
 2020-03-15 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T A20268G G20937T G20991T A23403G GTACGATC29747- TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_538039
 2020-03-15 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C2232T C2508T G11083T T15888C G26144T C28511A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538041
 2020-03-15 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T G15438T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538043
 2020-03-15 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T G21786A A23403G G29009A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538044
 2020-03-15 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T G15438T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538045
 2020-03-15 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C15346A A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539524
 2020-03-15 2020-09-18
 Spain hCoV-19/Spain/CL-ISCIII-202468/2020
 C241T C3037T C6696T C14408T A20268G A23403G

EPI_ISL_547463
 2020-03-15 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T G28195T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548984
 2020-03-15 2020-09-28
 Singapore hCoV-19/Singapore/976/2020
 ATTAAAGG1- AAAAAAAAAAAA29892-

EPI_ISL_548989
 2020-03-15 2020-09-28
 Singapore hCoV-19/Singapore/981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T G11083T C14408T G17259T A23403G G25563T A27736G AAAAAAAAAAAA29892-

EPI_ISL_548998
 2020-03-15 2020-09-28
 Singapore hCoV-19/Singapore/990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- T4579A A18333T C19011T AAAAAAAAAAAA29892-

EPI_ISL_549005
 2020-03-15 2020-09-28
 Singapore hCoV-19/Singapore/997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGT1- C241T C1059T C3037T A8808R T8869Y C14408T C14670Y A19585R A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_561363
 2020-03-15 2020-09-30
 United Kingdom hCoV-19/England/GSTT-4721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1973T A2480G C2558T A8537G G11083T C14805T C25339T G26144T T26732G ACGT27611- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565961
 2020-03-15 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_566024
 2020-03-15 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T A5011M C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_568956
 2020-03-15 2020-10-02
 France hCoV-19/France/IHU-0756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

GWHAORC01000001
 2020-03-15 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P1.2/2020
 C241T G3231T C14408T T16254C T16545C A23403G A26449T

GWHAORN01000001
 2020-03-15 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-CP1/2020
 C241T C2416T C3037T C14322T C14408T A23403G G25563T T26038C

MT466583
 2020-03-15 2020-05-13
 United States SARS-CoV-2/human/USA/AK002/2020
 ATTAAAGGTTTATACC1- C241T C3037T C6504T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

MT477835
 2020-03-15 2020-05-14
 United States SARS-CoV-2/human/USA/AK003/2020
 ATTAAAGGTTTAT1- C241T C3037T C6504T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

MT509465
 2020-03-15 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT510718
 2020-03-15 2020-05-25
 United States SARS-CoV-2/human/USA/hCoV-19-USA-CA-UCSF-UC40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29747A TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

MT670014
 2020-03-15 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-25338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT670019
 2020-03-15 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-27991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT671817
 2020-03-15 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1763/2020
 AT1-

MT706132
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-04/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T G15760A A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

MT706133
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706135
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12809T C14408T A22524T A23403G T25476C G25563T C26625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706145
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706285
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706286
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T T15366C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706287
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T A6584G G11161A C14408T T15366C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706288
 2020-03-15 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T T15366C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT772085
 2020-03-15 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A20268G A23403G C28638T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT772087
 2020-03-15 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-05/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T C14408T G15760A A23403G G25563T G29868T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT810483
 2020-03-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1384-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A A5742T G8653T A10512G G11083T A12130G C16111T G22745A T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810932
 2020-03-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0199-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A A5742T G8653T A10512G G11083T A12130G C16111T G22745A T28688C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811169
 2020-03-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0104-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C29253T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT907519
 2020-03-15 2020-08-20
 Venezuela SARS-CoV-2/human/VEN/17M/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T G564T C3037T T10162C C14408T A20268G A23403G G29210T G29734C GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

MW008565
 2020-03-15 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-034H/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T G2914A C3037T C14408T C16260T T18231C A23403G G25563T C28821A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MW008566
 2020-03-15 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-036J/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T C22986T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MW008574
 2020-03-15 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-044R/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- T490A C3177T A4911T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MW008578
 2020-03-15 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-055C/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

NMDC60013237
 2020-03-15 2020-06-01
 China hCoV-19/Guangzhou/ID074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1547G C3037T C6840T C14408T G21920A A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416481
 2020-03-16 2020-03-22
 Georgia hCoV-19/Georgia/Tb-712/2020
 ATT1- C241T C3037T C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_416830
 2020-03-16 2020-03-23
 United States hCoV-19/USA/NY-NYUMC2/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_416831
 2020-03-16 2020-03-23
 United States hCoV-19/USA/NY-NYUMC3/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_416832
 2020-03-16 2020-03-23
 United States hCoV-19/USA/NY-NYUMC4/2020
 C241T C3037T C14408T A23403G

EPI_ISL_417034
 2020-03-16 2020-03-24
 Brazil hCoV-19/Brazil/AMBR-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C8782T T9477A C12781T C14805T G25979T C26642T T28144C C28657T C28863T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_417409
 2020-03-16 2020-03-25
 Australia hCoV-19/Australia/NSW57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A2480G C2558T C2644T G11083T C14805T G26144T C28887T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417410
 2020-03-16 2020-03-25
 Australia hCoV-19/Australia/NSW58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A2480G C2558T G11083T C14805T G26144T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417468 MT582477
 2020-03-16 2020-03-26
 Germany SARS-CoV-2/human/DEU/NRW-23/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417504
 2020-03-16 2020-03-26
 United States hCoV-19/USA/WI-UW-15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C7945T C8782T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417506
 2020-03-16 2020-03-27
 United States hCoV-19/USA/WI-UW-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417508
 2020-03-16 2020-03-27
 United States hCoV-19/USA/WI-UW-21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G28871A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417510
 2020-03-16 2020-03-27
 United States hCoV-19/USA/WI-UW-19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417513
 2020-03-16 2020-03-27
 United States hCoV-19/USA/WI-UW-14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G28871A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417536
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/10/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417550
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/184/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_417551
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/187/2020
 C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC

EPI_ISL_417553
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/220/2020
 C1218T G27806T G29711T

EPI_ISL_417563
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/235/2020
 C19T C241T C3037T C4276T C13377A C14408T A23403G A26530G

EPI_ISL_417573
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/245/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417618
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/29/2020
 C8782T T9445C C17747T A17858G C18060T A24694T T28144C G29140T T29361C

EPI_ISL_417672
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/38/2020
 C2668T C14805T T17247C G26144T

EPI_ISL_417676
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/98/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417678
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/185/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417685
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/215/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417699
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/206/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_417703
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/179/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417706
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/199/2020
 C241T T658C C3037T C14408T A23403G C24378T A24862G C27476T C28629T C29541T

EPI_ISL_417709
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/189/2020
 C241T C3037T A10323G C14408T T18603C A20268G A23403G T24063C

EPI_ISL_417716
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/174/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417717
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/195/2020
 C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417724
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/182/2020
 C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417733
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/207/2020
 C241T C3037T C14408T A23403G GGG28881AAC -29686C

EPI_ISL_417742
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/197/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417743
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/200/2020
 C241T T658C C3037T C14408T C20031T A23403G A24862G C28629T

EPI_ISL_417746
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/183/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_417750
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/202/2020
 C5142T G11083T C14805T T17247C T25070C G26144T

EPI_ISL_417752
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/213/2020
 C241T C1059T C3037T T13006C C14408T A23403G C23929T G25563T C25688T G27430A

EPI_ISL_417753
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/180/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417754
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/226/2020
 C241T C3037T C14408T A23403G C25350T C25539T

EPI_ISL_417762
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/191/2020
 A4123G C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T GTTCTA28090- T28144C

EPI_ISL_417763
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/211/2020
 C241T C3037T A3830G C14408T A23403G A26530G

EPI_ISL_417766
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/208/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_417774
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/175/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417814
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/181/2020
 A161T C241T G2780T C3037T C14408T A20268G A23403G

EPI_ISL_417815
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/186/2020
 C241T C3037T C14408T C23086T A23403G C27046T GGG28881AAC

EPI_ISL_417818
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/190/2020
 C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417820
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/193/2020
 A161T C241T G2780T C3037T C14408T A20268G A23403G

EPI_ISL_417822
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/196/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_417823
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/198/2020
 C241T T658C C3037T C14408T A23403G A24862G C27476T C28629T C29541T

EPI_ISL_417824
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/201/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417825
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/203/2020
 G11083T C14805T C15237T T17247C G26144T

EPI_ISL_417826
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/204/2020
 C241T C3037T C14408T G16864A A23403G GGG28881AAC

EPI_ISL_417827
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/205/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417829
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/210/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_417830
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/212/2020
 C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_417831
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/214/2020
 C241T C3037T C14408T A23403G

EPI_ISL_417832
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/216/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417833
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/217/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417834
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/218/2020
 C241T C3037T C14408T C16949T G18756A C19391T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417835
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/219/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417836
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/221/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417837
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/222/2020
 C241T T658C C3037T C14408T A23403G A24862G C28629T

EPI_ISL_417838
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/223/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417839
 2020-03-16 2020-03-27
 Iceland hCoV-19/Iceland/224/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_418017
 2020-03-16 2020-03-28
 Portugal hCoV-19/Portugal/PT0032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G11527T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418018
 2020-03-16 2020-03-28
 Portugal hCoV-19/Portugal/PT0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418020
 2020-03-16 2020-03-28
 Portugal hCoV-19/Portugal/PT0035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G24095T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418021
 2020-03-16 2020-03-28
 Portugal hCoV-19/Portugal/PT0036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T T10825A G11083T C14805T G24095T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418029 MT259236
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW244/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AACC34TTTA C8782T C17747T A17858G C18060T T23010C T28144C -29904GANA

EPI_ISL_418030 MT259237
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- AACC34HTTH C8782T C17747T A17858G C18060T T28144C G28280T T29515A AAAAAAA29897-

EPI_ISL_418032 MT259239
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAG1- C1059T C3037T C14408T A23403G G25563T G29553A AAAAA29899-

EPI_ISL_418033 MT259240
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAA1- C1059T C3037T C14408T A23403G G25563T G29553A AA29902-

EPI_ISL_418034 MT259241
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTAT1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418037 MT259244
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- ACC35TTH C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAA29900-

EPI_ISL_418040 MT259247
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGA1- C8782T C17747T A17858G C18060T T19632A A23989G T28144C GA29868VT

EPI_ISL_418046 MT259253
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTG1- G3955T A8681G C8782T C17747T A17858G C18060T G22604A T28144C

EPI_ISL_418047 MT259254
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW262/2020
 ATTAAAGGTTTATAC1- C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_418050 MT259257
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW265/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T A14604G C17747T A17858G C18060T C21911T T28144C AAAA29900-

EPI_ISL_418053 MT259260
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW268/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TH C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_418054 MT259261
 2020-03-16 2020-03-28
 United States SARS-CoV-2/human/USA/WA-UW269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- AACC34HTTH C241T C1059T C3037T G12111A C14408T A23403G G25563T G29553A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_418149
 2020-03-16 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-2415E/2020
 A1- G11083T C14805T T17247C G23856K C25493T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_418156
 2020-03-16 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-2423D/2020
 ATT1- G1440A G2891A C25669T G28851T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_418158
 2020-03-16 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-24279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G1440A G2891A C25669T G28851T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_418159
 2020-03-16 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-24288/2020
 A1- G1440A G2891A G28851T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_418163
 2020-03-16 2020-03-28
 United Kingdom hCoV-19/Wales/PHWC-242C4/2020
 ATTAAAGG1- G1440A G2891A G28851T

EPI_ISL_418192
 2020-03-16 2020-03-28
 United States hCoV-19/USA/NY-NYUMC7/2020
 C241T C1059T A2018G C3037T C14408T T21995C A23403G G25563T

EPI_ISL_418235
 2020-03-16 2020-03-29
 France hCoV-19/France/IDF2561/2020
 C241T C3037T C14408T C16887T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418236
 2020-03-16 2020-03-29
 France hCoV-19/France/HF2586/2020
 C241T C1059T C3037T C4113T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418237
 2020-03-16 2020-03-29
 France hCoV-19/France/HF2595/2020
 C241T C1059T C2003T C2469T C3037T C10582T C12116T C14408T A23403G G25563T C27059T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418238
 2020-03-16 2020-03-29
 France hCoV-19/France/HF2597/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418240
 2020-03-16 2020-03-29
 France hCoV-19/France/IDF2684/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_418416
 2020-03-16 2020-03-16
 France hCoV-19/France/ARA09588/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_418417
 2020-03-16 2020-03-16
 France hCoV-19/France/ARA09686/2020
 C241T C3037T C9541T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_418418
 2020-03-16 2020-03-16
 France hCoV-19/France/ARA10163/2020
 C241T C3037T C14408T C15324T A23403G C25433T C29546T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418419
 2020-03-16 2020-03-16
 France hCoV-19/France/ARA10165/2020
 C241T C3037T C14408T C15324T A23403G C25433T C29546T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418625
 2020-03-16 2020-03-30
 Belgium hCoV-19/Belgium/ULG-6688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C25728T A28225G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418627
 2020-03-16 2020-03-30
 Belgium hCoV-19/Belgium/ULG-6743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418639
 2020-03-16 2020-03-30
 Belgium hCoV-19/Belgium/ULG-8617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418673
 2020-03-16 2020-03-30
 United Kingdom hCoV-19/England/20122032802/2020
 C241T C3037T C14408T A23403G C25350Y

EPI_ISL_418675
 2020-03-16 2020-03-30
 United Kingdom hCoV-19/England/20122073102/2020
 ATG1605-

EPI_ISL_418678
 2020-03-16 2020-03-30
 United Kingdom hCoV-19/England/20122088102/2020
 A2480G C2558T C7011T G11083T C14805T C23533T G26144T

EPI_ISL_418702
 2020-03-16 2020-03-30
 United Kingdom hCoV-19/England/20124020802/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_418711
 2020-03-16 2020-03-30
 United Kingdom hCoV-19/England/20124034702/2020
 A2480G C2558T G3539T G11083T C14805T C21638Y G26144T

EPI_ISL_418723
 2020-03-16 2020-03-30
 United Kingdom hCoV-19/England/20124049402/2020
 C241T C3037T C7083T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_418869 MT263384
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- T490A C3177T C8782T C9113T T18736C C21648T C24034T T26729C C27635T G28077C T28144C A29567C A29700G AAAAAAAAA29895-

EPI_ISL_418873 MT263388
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- C8782T A10323G T15927G C17747T A17858G C18060T C26936T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418875 MT263390
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- T150Y C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904ANADA

EPI_ISL_418876 MT263391
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW308/2020
 ATTA1- T77W A79G C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAAAAANANANA

EPI_ISL_418889 MT263402
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW322/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_418890 MT263403
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW323/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C16329T C17747T A17858G C18060T T23010C T28144C -29904ANANA

EPI_ISL_418892 MT263405
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C8078T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAA29891-

EPI_ISL_418897 MT263410
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW330/2020
 ATTAAAG1- G8C TACCTTCCCAGGTAACAAACCAACC13- T490A C3177T C6040T C8782T G12478A T18736C C21910T C24034T T26729C G28077C T28144C C28896G A29700G AA29902CC

EPI_ISL_418899 MT263412
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C2232T C8782T C17747T A17858G C18060T T23010C T28144C A29903-

EPI_ISL_418900 MT263413
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW333/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAA29894-

EPI_ISL_418903 MT263416
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T G11083T C17747T A17858G C18060T G21850T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418904 MT263417
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW337/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C27804T G29553A AAAAAAA29897-

EPI_ISL_418905 MT263418
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW338/2020
 ATTAAAGGTTTATACCTTCCCAG1- ACC35TTH C8782T C17747T A17858G C18060T T23010C T28144C AAAA29900-

EPI_ISL_418906 MT263419
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G8602A C8782T C17747T A17858G C18060T T28144C C29870H A29903-

EPI_ISL_418907 MT263420
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW340/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T G25064C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418908 MT263421
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW341/2020
 TAA3- AACC34HTTH C1238T C3593T C4683T C8782T C17747T A17858G C18060T A27200G T28144C T28924C

EPI_ISL_418909 MT263422
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C5000T C8782T T15927G C17747T A17858G C18060T C26936T T28144C C29085T -29904ANANAAA

EPI_ISL_418910 MT263423
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17747T A17858G C18060T T28144C G29868V C29870H

EPI_ISL_418911 MT263424
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- AAGTCATTT686- C6310T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAA29887-

EPI_ISL_418912 MT263425
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C8782T C17747T A17858G C18060T T28144C TG29867AA C29870A

EPI_ISL_418921 MT263434
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C1912T C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418922 MT263435
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW355/2020
 ATTAAAGGTTTATACCTT1- AACC34TTTA A6693G C8782T C14877T C17747T A17858G C18060T T28144C A29188T AAA29901-

EPI_ISL_418923 MT263436
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW356/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_418927 MT263440
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- T2041C C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAA

EPI_ISL_418932 MT263445
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW365/2020
 AT1- C37H C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418935 MT263448
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C16887T C17747T A17858G C18060T G25850A A27525G T28144C A29903-

EPI_ISL_418938 MT263451
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C1238T C8782T C17747T A17858G C18060T G25494T T28144C T28924C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_418948 MT263462
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C8937T C17747T A17858G C18060T T28144C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_418949 MT263463
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/CT-UW329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T C11704T C17747T A17858G C18060T T20256C T28144C TG29867AA C29870A

EPI_ISL_418950 MT263464
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW384/2020
 ATTAAAG1- G8C TACCTTCCCAGGTAACAAACCAACC13- G8602A C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418951 MT263465
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AA29902-

EPI_ISL_418953 MT263467
 2020-03-16 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- TGT52GTC C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A

EPI_ISL_419256 MT322398
 2020-03-16 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T G29868A C29870A

EPI_ISL_419407
 2020-03-16 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-243EF/2020
 A1- T10W G1440A G2891A C25669Y G28851T

EPI_ISL_419550 MT582467
 2020-03-16 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-33/2020
 C241T T658C C3037T C4886T C14408T A23403G A24862G C28629T

EPI_ISL_419551 MT582466
 2020-03-16 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-34/2020
 C241T T658C C3037T C14408T A23403G A24862G C28629T

EPI_ISL_419552 MT582465
 2020-03-16 2020-04-02
 Germany SARS-CoV-2/human/DEU/NRW-35/2020
 G1820A A2480G C2558T T3283A T8599C C14805T G26144T

EPI_ISL_419588
 2020-03-16 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS4836560/2020
 A187G C241T C3037T C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_419593
 2020-03-16 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS6603085/2020
 C241T A618G C3037T C14408T C15324T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419594
 2020-03-16 2020-04-02
 Luxembourg hCoV-19/Luxembourg/LNS7537751/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_419669
 2020-03-16 2020-04-03
 Austria hCoV-19/Austria/CeMM0016/2020
 C241T A1140C C3037T C14408T A19652G A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419670
 2020-03-16 2020-04-03
 Austria hCoV-19/Austria/CeMM0017/2020
 C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_419805 MT451004
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC94/2020
 ATTAAAG1- G8A C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419807 MT451006
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C4683T

EPI_ISL_419808 MT451007
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1076T G1397A G11083T T28688C G29742T

EPI_ISL_419810 MT451008
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC98/2020
 ATTAAAG1- C241T C3037T G11083K C14408T A23403G A26530G

EPI_ISL_419811 MT451009
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC99/2020
 ATTA1- C241T C2416T C3037T G9092A C14408T C14786T G20578T A23403G G25563T T25956C

EPI_ISL_419812 MT451010
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G C29857Y

EPI_ISL_419837 MT451044
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC140/2020
 ATT1- C3634T C8782T C17747T A17858G C18060T T28144C AC29761-

EPI_ISL_419838 MT451045
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC141/2020
 A1- C241T C3037T C14408T A23403G

EPI_ISL_419839 MT451046
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC142/2020
 A1- C241T C1059T C3037T G12052T C14408T A23403G G25563T

EPI_ISL_419840 MT451047
 2020-03-16 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC143/2020
 ATTA1- C241T C313T C3037T C14408T C21139T A23403G GGG28881AAC

EPI_ISL_420018 MT322413
 2020-03-16 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0031/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_420305
 2020-03-16 2020-04-06
 United States hCoV-19/USA/AK-PHL006/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420306
 2020-03-16 2020-04-06
 United States hCoV-19/USA/AK-PHL015/2020
 ATTAAAGGTTTA1- T2266C C6027T C7979M A10236G G11083T C14805T T17247C G26144T AAAAAAAAAAAAAA29890-

EPI_ISL_421369 MT370846
 2020-03-16 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T T14104C C14408T C18877T A23403G G25563T GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_421370 MT370891
 2020-03-16 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_421375 MT370862
 2020-03-16 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T A6324G T11191A C11916T C14408T C18998T A23403G G25563T G29540A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421378 MT370895
 2020-03-16 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807-

EPI_ISL_421550
 2020-03-16 2020-04-08
 United States hCoV-19/USA/WY-WYPHL014/2020
 C241T C3037T G11083T C14408T A23403G G26727T

EPI_ISL_421684
 2020-03-16 2020-04-09
 United States hCoV-19/USA/MN128-MDH128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421685
 2020-03-16 2020-04-09
 United States hCoV-19/USA/MN129-MDH129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421687
 2020-03-16 2020-04-09
 United States hCoV-19/USA/MN131-MDH131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T C21727T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421688
 2020-03-16 2020-04-09
 United States hCoV-19/USA/MN132-MDH132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A18233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421689
 2020-03-16 2020-04-09
 United States hCoV-19/USA/MN133-MDH133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421690
 2020-03-16 2020-04-09
 United States hCoV-19/USA/MN134-MDH134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3617R C8782T C17747T A17858G C18060T C20016T C21614T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421691
 2020-03-16 2020-04-09
 United States hCoV-19/USA/MN135-MDH135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_422413
 2020-03-16 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU11/2020
 C228T G1397A G9479T A9514G G11083T A19818G G26720C G28202T T28688C T28835C G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422414
 2020-03-16 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU12/2020
 C241T C3037T G11464T C14408T C15324T T18495C C21575T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422427
 2020-03-16 2020-04-10
 Kuwait hCoV-19/Kuwait/KU008/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422664 LR878202
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21778A G22344T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422666 LR878207
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422667 LR878189
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1820A A2480G C2558T T8599C G11083T C11102T C14805T G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422703 LR877781
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422704 LR877772
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21778A G22344T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422705 LR877780
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21778A G22344T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422847 LR878178
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7798T C14408T A23403G C25688T C28737T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422848 LR878187
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C16762T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422849 LR878177
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T G21268A C23277T A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422850 LR878182
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422851 LR878169
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422852 LR878186
 2020-03-16 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422963 MT293158
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C8782T C17747T A17858G C18060T G21255C C26013T T28144C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_422963 MT293158
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C8782T C17747T A17858G C18060T G21255C C26013T T28144C ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_422964 MT293159
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW394/2020
 ATTAAAGGTTT1- AACC34TTTA C8782T A12787G C17747T A17858G C18060T A24694T T28144C G28899C AA29902-

EPI_ISL_422964 MT293159
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW394/2020
 ATTAAAGGTTT1- AACC34TTTA C8782T A12787G C17747T A17858G C18060T A24694T T28144C G28899C AA29902-

EPI_ISL_422965 MT293160
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34CTTT C8782T C15738T C17747T A17858G C18060T C21642T A27525G T28144C G28655T AAAAAAAA29896-

EPI_ISL_422965 MT293160
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34CTTT C8782T C15738T C17747T A17858G C18060T C21642T A27525G T28144C G28655T AAAAAAAA29896-

EPI_ISL_422966 MT293161
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C6286T G11083T C14408T A23403G G25563T C28311T A29869T -29904AAANA

EPI_ISL_422966 MT293161
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C6286T G11083T C14408T A23403G G25563T C28311T A29869T -29904AAANAD

EPI_ISL_422967 MT293162
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW397/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_422967 MT293162
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW397/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_422978
 2020-03-16 2020-04-12
 United States hCoV-19/USA/UN-UW-1291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- G91B C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAA

EPI_ISL_422979
 2020-03-16 2020-04-12
 United States hCoV-19/USA/UN-UW-1292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AD

EPI_ISL_422980
 2020-03-16 2020-04-12
 United States hCoV-19/USA/UN-UW-1307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_422982 MT293177
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USACT-UW412/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C2061T A8170G C8782T C17747T A17858G C18060T T23010C T28144C -29904AAANAAANA

EPI_ISL_422982 MT293177
 2020-03-16 2020-04-03
 United States SARS-CoV-2/human/USACT-UW412/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C2061T A8170G C8782T C17747T A17858G C18060T T23010C T28144C -29904AAANAAANA

EPI_ISL_424255 MT326091
 2020-03-16 2020-04-12
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-1832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTG1- A2952G AG2956TT A4236G G11083T C14805T T25655C G26144T A29903D

EPI_ISL_424668 MT339039
 2020-03-16 2020-04-13
 United States SARS-CoV-2/human/USA/AZ-ASU2922/2020
 C8782T C17747T A17858G C18060T A22005G T28144C

EPI_ISL_424972
 2020-03-16 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-16/2020
 AT1- C241T C3037T C14408T C17004T C18877T G21204T A23403G G25563T G25767T

EPI_ISL_425121 MT582463
 2020-03-16 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-37/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_425122 MT582462
 2020-03-16 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-38/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_425187
 2020-03-16 2020-04-14
 Spain hCoV-19/Spain/Valencia63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C27981T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425188
 2020-03-16 2020-04-14
 Spain hCoV-19/Spain/Valencia64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425189
 2020-03-16 2020-04-14
 Spain hCoV-19/Spain/Valencia65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17126C C17746T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425216
 2020-03-16 2020-04-14
 Spain hCoV-19/Spain/Valencia92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C850T C6449T C8782T G13617T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425480
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DFD8/2020
 T1516C ATG1605- T4949C C16887T

EPI_ISL_425481
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DFE7/2020
 C2558T G11083T C14805T C19814T A25822G G26144T C29167T

EPI_ISL_425482
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10DFF6/2020
 ATG1605- C1912T A2501G G13960A A18153G

EPI_ISL_425483
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E001/2020
 C241T C3037T C14408T A23403G G25429T C27972T C28045T

EPI_ISL_425675
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C7926T G11083T C14805T G26144T C27600T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425677
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425682
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C16470T C23707T G26144T C27012A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425684
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425685
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T13345C C17999T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425693
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T13345C C17999T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425736
 2020-03-16 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426297
 2020-03-16 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-27804-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T T21976C A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426323
 2020-03-16 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-16766-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T CAT29838ATC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426529
 2020-03-16 2020-04-17
 United States hCoV-19/USA/AZ-TG269863/2020
 C241T C1059T C3037T C5183T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_427583
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11A03P/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427584
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11A06P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427585
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11B03P/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871MG

EPI_ISL_427586
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11B04P/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427587
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11B07P/2020
 C241T C3037T C14408T A23403G G26951T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427588
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11C03P/2020
 A1- C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427589
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11C04P/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RR

EPI_ISL_427590
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11C05P/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C5817T C14408T G22289T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_427591
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11D01N/2020
 ATTA1- C241T C3037T C14408T A23403G G26951T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871D

EPI_ISL_427592
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11E04P/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427593
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11E05P/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871HG

EPI_ISL_427594
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11E09P/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871K

EPI_ISL_427595
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11F04P/2020
 C241T C1059T C1917T C3037T C14408T A23403G G24620T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427596
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11F06P/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28085T G29736T AAA29871RGG AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_427597
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11F07P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427598
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP11H06P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871W

EPI_ISL_427599
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12B04P/2020
 G11083T C14805T T17247C G26144T G27047R AAAA29871VGGG AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_427600
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12C01P/2020
 ATTA1- G11083T C14805T T17247C G26144T A29871W AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427601
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12C04P/2020
 ATTAAAGGTT1- C241T C1059T C3037T A4336G C10851T C14408T G17193T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871MG

EPI_ISL_427602
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12C09P/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871W

EPI_ISL_427603
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12D02P/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T C14786T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871MG

EPI_ISL_427604
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12D08P/2020
 C241T C1059T C3037T A7824G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427605
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12D09P/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26151T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427606
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12E01P/2020
 ATTAAAGGTT1- C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427607
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12E06P/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G C28399T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427608
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12E09P/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871SG

EPI_ISL_427609
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12F01P/2020
 ATTAAA1- T4008C G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427610
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12F02P/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T T18429Y C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427611
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12F03P/2020
 ATTAAAGGTTTAT1- C241T C1059T C1917T C3037T C6128T C8964T C14262T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871T

EPI_ISL_427612
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12F07P/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T C28789T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427613
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12G01P/2020
 ATTAAA1- C241T C1059T C3037T C14408T C14786T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427614
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12G02P/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T T19653Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_427615
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12G03P/2020
 G11083T C14805T T17247C G26144T G28747T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_427616
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12G06P/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871KG

EPI_ISL_427617
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12G08P/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RGG

EPI_ISL_427618
 2020-03-16 2020-04-19
 United States hCoV-19/USA/NY-WCMP12H01P/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871RG

EPI_ISL_428259
 2020-03-16 2020-04-20
 United States hCoV-19/USA/WI-UW-163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428260
 2020-03-16 2020-04-20
 United States hCoV-19/USA/WI-UW-164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19101T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428345
 2020-03-16 2020-04-20
 United States hCoV-19/USA/WI-UW-249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C8016T C14408T T15366C A23403G G25563T G28903T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428490
 2020-03-16 2020-04-21
 Taiwan hCoV-19/Taiwan/78/2020
 A4- C241T C3037T C14408T G19825T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_428670 MT371047
 2020-03-16 2020-04-21
 Sri Lanka SARS-CoV-2/human/LKA/COV38/2020
 C37A G1397A C5986T G11083T G18984C C20483T T26181G T28688C G29465T G29742T

EPI_ISL_428824
 2020-03-16 2020-04-22
 Singapore hCoV-19/Singapore/45/2020
 ATTA1- C241T C3037T C14408T G14677R A23403G T24769Y GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_428825
 2020-03-16 2020-04-22
 Singapore hCoV-19/Singapore/46/2020
 A1- T76W T78K C241T C3037T C14408T G15349C C20031A A23403G C27046T GGG28881AAC G29392T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_428875
 2020-03-16 2020-04-22
 Russia hCoV-19/Russia/Moscow-67117/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428881
 2020-03-16 2020-04-22
 Russia hCoV-19/Russia/Moscow-67142/2020
 T10G C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_428882
 2020-03-16 2020-04-22
 Russia hCoV-19/Russia/Moscow-67609/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429163
 2020-03-16 2020-04-23
 Sweden hCoV-19/Sweden/20-50361/2020
 C241T C3037T C4059A C14408T A23403G GGG28881AAC

EPI_ISL_429209
 2020-03-16 2020-04-23
 Switzerland hCoV-19/Switzerland/GE3650/2020
 ATTAAA1- C241T C3037T G6553T C13862T C14408T A23403G C28836T A29903-

EPI_ISL_429210
 2020-03-16 2020-04-23
 Switzerland hCoV-19/Switzerland/GE8147/2020
 ATTA1- C241T C3037T C14408T A20268G A23403G C28854T A29903-

EPI_ISL_429213
 2020-03-16 2020-04-23
 Switzerland hCoV-19/Switzerland/GE8086/2020
 ATTAAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429301
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH49/2020
 C241T C1059T C3037T G10465A C14408T C21742T A23403G G25563T G28899T

EPI_ISL_429302
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH50/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429303
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH51/2020
 T99C C241T C1059T C3037T C14408T A23403G G25563T C29719T

EPI_ISL_429318
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH77/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429321
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH80/2020
 C241T C1059T C1302T C3037T A9280G C11074T C14408T A23403G G25563T C29095T

EPI_ISL_429322
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH81/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429324
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH83/2020
 C241T C1059T C1263T C3037T G13520A C14408T A14691G A23403G G25563T

EPI_ISL_429325
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH84/2020
 C241T C3037T C14408T C18744T A20268G A23403G

EPI_ISL_429582
 2020-03-16 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI514/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429676
 2020-03-16 2020-04-24
 Brazil hCoV-19/Brazil/CV16/2020
 ATTAA1- C3037T C14408T A23403G GA27420TC GGG28881AAC T29148C TAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29699-

EPI_ISL_429681
 2020-03-16 2020-04-24
 Brazil hCoV-19/Brazil/CV21/2020
 ATTAA1- C241T C2113T C3037T C14408T C18877T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_429866
 2020-03-16 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-4236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_429993 MT811545
 2020-03-16 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0033-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G G24977T GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_429997 MT811549
 2020-03-16 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0037-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G11083T C14805T G26144T G28842T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430002 MT811554
 2020-03-16 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0044-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G11365T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430003 MT811555
 2020-03-16 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0045-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430188 MT632495
 2020-03-16 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S151/2020
 C1238T C3593T C4683T C8782T C17747T A17858G C18060T A27200G T28144C T28924C

EPI_ISL_430189 MT632560
 2020-03-16 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S152/2020
 C6402T C8782T C15960T C17747T A17858G C18060T T28144C

EPI_ISL_430190 MT632535
 2020-03-16 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S153/2020
 C6402T C8782T C15960T C17747T A17858G C18060T T28144C

EPI_ISL_430191 MT632543
 2020-03-16 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S154/2020
 C1734T C8782T C17747T A17858G C18060T C19186T T28144C

EPI_ISL_430193 MT632614
 2020-03-16 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S156/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430196 MT632501
 2020-03-16 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S158/2020
 C6310T C8782T C17747T A17858G C18060T G27327T T28144C G28378T

EPI_ISL_430197 MT632622
 2020-03-16 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S159/2020
 C6310T C8782T C17747T A17858G C18060T G27327T T28144C

EPI_ISL_430864
 2020-03-16 2020-04-28
 Sweden hCoV-19/Sweden/20-50360/2020
 C241T C3037T C4059A C14408T A23403G GGG28881AAC

EPI_ISL_431103
 2020-03-16 2020-04-29
 India hCoV-19/India/GMC-KN443/2020
 C1707Y C6312A G11083T C13730T C19524Y C23929T C28311T G29868R C29870A

EPI_ISL_431240
 2020-03-16 2020-04-29
 China hCoV-19/Fujian/IM3520003T/2020
 ATTAAAGGTT1- A26- C28T C241T C3037T C14408T A23403G G25088T GGG28881AAC TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_434464
 2020-03-16 2020-04-29
 Greece hCoV-19/Greece/145/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C12754T G21255T G25906T C26088T T28144C TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434477
 2020-03-16 2020-04-29
 Greece hCoV-19/Greece/143/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434482
 2020-03-16 2020-04-29
 Greece hCoV-19/Greece/156/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434483
 2020-03-16 2020-04-29
 Greece hCoV-19/Greece/144/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T C14805T T17247C G26144T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434516 MT811566
 2020-03-16 2020-04-29
 Jordan SARS-CoV-2/human/JOR/SEARCH-0084-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A2480G C2558T G11083T C14805T TTA21991- G26144T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_434533
 2020-03-16 2020-04-29
 Costa Rica hCoV-19/Costa Rica/0001/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C6696T C14408T A20268G A21617T A23403G G29862T G29864C A29866G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_434535
 2020-03-16 2020-04-29
 Costa Rica hCoV-19/Costa Rica/0002/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A26T C241T C3037T C6696T C14408T A20268G A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_434647
 2020-03-16 2020-04-30
 Sweden hCoV-19/Sweden/20-05721/2020
 C241T C3037T C12213T C14408T A23403G GGG28881AAC

EPI_ISL_434648
 2020-03-16 2020-04-30
 Sweden hCoV-19/Sweden/20-05847/2020
 C241T C3037T C12213T C14408T A23403G C28087T GGG28881AAC

EPI_ISL_434705
 2020-03-16 2020-05-01
 Thailand hCoV-19/Thailand/NIH-2720/2020
 ATTAAAGGTTTATA1- A895G C2942T G4390T C8782T C9598T G11083T A11782G G20134T G24047A T28144C C29741T AGGAGAATGACAAAAAAA29860-

EPI_ISL_434706
 2020-03-16 2020-05-01
 Thailand hCoV-19/Thailand/NIH-2721/2020
 ATTAAAGGTTTATACCTT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_434714
 2020-03-16 2020-05-01
 United States hCoV-19/USA/TX-HMH03/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434715
 2020-03-16 2020-05-01
 United States hCoV-19/USA/TX-HMH04/2020
 C241T C3037T C14408T C14980T A20268G A23403G

EPI_ISL_434716
 2020-03-16 2020-05-01
 United States hCoV-19/USA/TX-HMH05/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434717
 2020-03-16 2020-05-01
 United States hCoV-19/USA/TX-HMH06/2020
 T490A C3177T C8782T T18736C T23677C C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_435061
 2020-03-16 2020-05-02
 India hCoV-19/India/NCDC-01537/2020
 C241T C3037T T8022K C14408T A23116T A23403G C25350T C25642T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435124
 2020-03-16 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0879/2020
 C241T C3037T C3373A C11195T C14408T A23403G G28580T GGG28881AAC

EPI_ISL_435125
 2020-03-16 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L0881/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_435663
 2020-03-16 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC184/2020
 C6312A G11083T C13730T C23929T A25505T C28311T

EPI_ISL_436225
 2020-03-16 2020-05-06
 Spain hCoV-19/Spain/Valencia130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C26088T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436291
 2020-03-16 2020-05-06
 Spain hCoV-19/Spain/Valencia196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436818 MT439247
 2020-03-16 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C26110Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436819 MT439258
 2020-03-16 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20154/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_437138 MT412176
 2020-03-16 2020-04-29
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20051/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437205
 2020-03-16 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0003/2020
 C241T C3037T C14408T G19825T A23403G GGG28881AAC

EPI_ISL_437519
 2020-03-16 2020-05-11
 Czech Republic hCoV-19/Czech Republic/NRL_2615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437607 MT447171
 2020-03-16 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI205457-NST/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T C3768T G4390T C8782T C9598T T15354A G20134T G24047A G27877T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875C

EPI_ISL_437884 MT459883
 2020-03-16 2020-05-11
 Greece SARS-CoV-2/human/GRC/215_34644/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14267T C14805T A16095G G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438046
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0209/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438047
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0210/2020
 C241T A1140C C3037T C4194Y C8956Y C14408T A19652G A20268G A23403G A29866R AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_438048
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0212/2020
 C8782T T9530K C26088T T27801C T28144C AAA29901-

EPI_ISL_438049
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0213/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438050
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0216/2020
 C241T C3037T G3514T C10582T C14408T A20268G A23403G G29734C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438051
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0217/2020
 C241T C3037T G12832A C14408T C20457T A23403G GGG28881AAC AAA29901-

EPI_ISL_438052
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0218/2020
 C241T C3037T G12832A C14408T C19255T C20457T A23403G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_438053
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0219/2020
 C241T C3037T G12832A C14408T C20457T A23403G G24173K GGG28881AAC AAAAA29899-

EPI_ISL_438054
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0220/2020
 C241T C3037T G10610T C14408T T22521K A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438055
 2020-03-16 2020-05-12
 Austria hCoV-19/Austria/CeMM0221/2020
 C241T C3037T C14408T A20268G A23403G G29734C AAAAAAAAAAAAAAAA29888-

EPI_ISL_438226
 2020-03-16 2020-05-12
 United States hCoV-19/USA/MD-HP00033/2020
 C241T C1059T C3037T G10523C C12119T C14408T C18086A A23403G G25563T

EPI_ISL_440436
 2020-03-16 2020-05-12
 United Kingdom hCoV-19/England/CAMB-750F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K G25429T T26861Y CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_441419
 2020-03-16 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB3F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C6696T A9737G C11001T C22097T T22729C C29870A

EPI_ISL_441421
 2020-03-16 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB41B/2020
 ATTAAAGGTT1- ATG1605- C6696T C11001T C21707T C29870A

EPI_ISL_441425
 2020-03-16 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- ATG1605- C3828Y C6696T C11001T C29870A

EPI_ISL_441429
 2020-03-16 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A1515G T7831C C9223T G11083T C14805T T17247C A17799G G26144T C29870A

EPI_ISL_441434
 2020-03-16 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB4EE/2020
 ATTAAAGGTTTATACCTT1- ATG1605- C6696T C11001T G27364C C29870A

EPI_ISL_443193
 2020-03-16 2020-05-12
 Singapore hCoV-19/Singapore/101/2020
 T514C G1607R AC25274WM C26882T AAAAAAAAAAAA29892-

EPI_ISL_443199
 2020-03-16 2020-05-12
 Singapore hCoV-19/Singapore/107/2020
 C241T C3037T T5840C C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443226
 2020-03-16 2020-05-12
 Singapore hCoV-19/Singapore/134/2020
 C14636T AAAAAAAAAAAA29892-

EPI_ISL_443227
 2020-03-16 2020-05-12
 Singapore hCoV-19/Singapore/135/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443229
 2020-03-16 2020-05-12
 Singapore hCoV-19/Singapore/137/2020
 C241T A1461G G2086T C3037T C5730T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443266
 2020-03-16 2020-05-12
 France hCoV-19/France/B5322/2020
 A6G C241T C1059T C3037T C9891T G11083T C14408T C16469T A23403G G25563T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_444569
 2020-03-16 2020-05-14
 United States hCoV-19/USA/IL-NM074/2020
 T490A C3177T C8782T T18736C G21624C C24034T T26729C C27635T G28077C T28144C A29567C A29700G

EPI_ISL_444570
 2020-03-16 2020-05-14
 United States hCoV-19/USA/IL-NM075/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26111T

EPI_ISL_444977
 2020-03-16 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH1438/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_445273
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Rancagua_1/2020
 A1T T3A A5T C241T C3037T C14408T C19973T A20268G A23403G G29734C TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_445277
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Rancagua_5/2020
 A1T T3A A5T C241T C3037T G10265A C14408T A23403G GGG28881AAC G29398T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_445278
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Rancagua_6/2020
 ATTAAA1- C241T C3037T C14408T C18828T A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445279
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Temuco_2/2020
 ATTAAA1- C241T C3037T C8389T A12506R C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_445305
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_26/2020
 ATTAA1GCCTT C241T C3037T C14408T C17639T A20268G A23403G G27506T C28638T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838T

EPI_ISL_445306
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_27/2020
 ATTAAAGGTTTATACC1- C8782T T12364A C18138G A19719T C26088T T28144C A29860C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_445307
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_28/2020
 ATTAAAGGTTTATACCTTCCCAG1- A27C C241T C3037T G5230T C14408T C19269T A20268G A23403G G29843C T29845C T29848C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853C

EPI_ISL_445308
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_29/2020
 -3GCTTCAGTTG GG7AA C241T C3037T A12506R C14408T A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445309
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_30/2020
 ATT1GAG A5C C241T C3037T C14408T A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445310
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1319A C3037T C8389T A12506R C14408T A23403G G25563T CA29838TG GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_445322
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_43/2020
 A1C C8782T T10771C C17747T A17858G C18060T T28144C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_445323
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838T

EPI_ISL_445359
 2020-03-16 2020-05-15
 Chile hCoV-19/Chile/Santiago_63/2020
 -TA2AGTGAGTACACTGGTAATTACCAGTGTGGTCACTATAAACATATAACTTCTAAAGAAACTTTGTATTGCAAG A6C -10GCTTTAC C241T C3037T G10265A C14408T A23403G GGG28881AAC G29398T T29859G G29861A GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_447254
 2020-03-16 2020-05-17
 Taiwan hCoV-19/Taiwan/TSGH-28/2020
 C241T C2453A C2502A T2517A C3037T G4910T A5220C T5224A A5264G G7289T G11230T G11528C T12939G C14120T A14201T A18743T G20725T A22725C T22757C A23403G C29095T A29903GAAAAAAAAAAA

EPI_ISL_447532
 2020-03-16 2020-05-17
 Spain hCoV-19/Spain/Barcelona_VH1449/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_447641 MT459884
 2020-03-16 2020-05-11
 Greece SARS-CoV-2/human/GRC/216_34732/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447836 MT459861
 2020-03-16 2020-05-11
 Greece SARS-CoV-2/human/GRC/145_34726/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C12754T G21255T G25906T C26088T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450043
 2020-03-16 2020-05-19
 United States hCoV-19/USA/NY-PV09355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T C27964T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_450044
 2020-03-16 2020-05-19
 United States hCoV-19/USA/NY-PV09356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C2037T C3037T C10851T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450046
 2020-03-16 2020-05-19
 United States hCoV-19/USA/NY-PV09358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450047
 2020-03-16 2020-05-19
 United States hCoV-19/USA/NY-PV09359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T T5278C C10851T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450404 MT270815
 2020-03-16 2020-03-30
 China SARS-CoV-2/human/HKG/case163_VM20009579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_450700 MT506885
 2020-03-16 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6814C G11083T C14408T G22203T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450796 MT507274
 2020-03-16 2020-05-22
 Jamaica SARS-CoV-2/human/JAM/JM-CDC-6365/2020
 A2480G C2558T G11083T C14805T G26144T G28321A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450797 MT507275
 2020-03-16 2020-05-22
 Jamaica SARS-CoV-2/human/JAM/JM-CDC-6603/2020
 C241T C1059T C3037T C14408T A23403G C25276T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450798 MT507794
 2020-03-16 2020-05-22
 Jamaica SARS-CoV-2/homo sapien/JAM/JM-CDC-6729/2020
 C241T C1059T C3037T T10299Y C11916T C14408T C18998T A23403G G25563T G28899R G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451694 LR824255
 2020-03-16 2020-05-25
 Switzerland 100110
 C241T C3037T C14408T T19349W T19458Y T19482K T19516K A23403G G27758T C28724T GGG28881AAC

EPI_ISL_451695 LR824270
 2020-03-16 2020-05-25
 Switzerland 100111
 C241T C3037T C7735T C14408T C15324T T19482K A19526W T22516W A23403G

EPI_ISL_451697 LR824268
 2020-03-16 2020-05-25
 Switzerland 100113
 C241T C3037T C14408T C15324T C19325M C19884T A23403G

EPI_ISL_451699 LR824257
 2020-03-16 2020-05-25
 Switzerland 100115
 C241T C3037T C14408T A20268G C22383Y A22457R G22487K T22516W A23403G

EPI_ISL_451701 LR824273
 2020-03-16 2020-05-25
 Switzerland 100117
 C241T C3037T C14408T C15324T T19301K A19339M T19431Y T19482K A22481R A23403G G28881T

EPI_ISL_451702 LR824271
 2020-03-16 2020-05-25
 Switzerland 100118
 C241T C3037T C14408T C15324T C20930Y A23403G C23896Y C27874Y G28881T

EPI_ISL_451706 LR824259
 2020-03-16 2020-05-25
 Switzerland 100122
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_451708 LR824263
 2020-03-16 2020-05-25
 Switzerland 100124
 C241T C3037T T6699Y C14408T C15324T C22347S A23403G

EPI_ISL_451709 LR824266
 2020-03-16 2020-05-25
 Switzerland 100125
 C241T C3037T C14408T C15324T C19317M T19482K T22479K T22516W A23403G

EPI_ISL_451711 LR824262
 2020-03-16 2020-05-25
 Switzerland 100127
 C241T C3037T C8950T C14408T A22374R T22515K A23403G GGG28881AAC

EPI_ISL_451712 LR824276
 2020-03-16 2020-05-25
 Switzerland 100128
 C241T C3037T A13610R C13862T C14408T A19298W T19427W G19735K C22446Y C22513M A23403G G25641K C28836T

EPI_ISL_451713 LR824274
 2020-03-16 2020-05-25
 Switzerland 100129
 C241T C346Y C3037T C14408T C15324T C18176Y A23403G

EPI_ISL_451716 LR824277
 2020-03-16 2020-05-25
 Switzerland 100132
 C241T C3037T C3373A C14408T A19548R A23403G GGG28881AAC

EPI_ISL_451717 LR824291
 2020-03-16 2020-05-25
 Switzerland 100133
 C241T C3037T A6444G C14408T C15324T T22516W A23403G C28887T

EPI_ISL_451723 LR824283
 2020-03-16 2020-05-25
 Switzerland 100139
 C241T C3037T C14408T C15324T A19298W T22516W A23403G

EPI_ISL_451728 LR824289
 2020-03-16 2020-05-25
 Switzerland 100144
 C241T C3037T C11109Y C14408T C15324T A19298W C19366M A19392R A19548R A22379W A23403G C26527Y C26533Y C26559Y A27218R

EPI_ISL_451730 LR824288
 2020-03-16 2020-05-25
 Switzerland 100146
 C241T C3037T C14408T T22516K A23403G

EPI_ISL_451732 LR824294
 2020-03-16 2020-05-25
 Switzerland 100148
 C241T C1059T C3037T C10015T C14408T A19298W C19320Y T19456W T19468Y T19482K A22466W A23403G G25563T

EPI_ISL_451734 LR824295
 2020-03-16 2020-05-25
 Switzerland 100150
 C241T C3037T C14408T C19170T A19407R G19417K A19471W T19482K G19509A A19548R A23403G GGG28881AAC

EPI_ISL_451738 LR824311
 2020-03-16 2020-05-25
 Switzerland 100154
 C241T C3037T C8293T C14408T C17118T T18488C C19454Y C19463M T22515K A23403G T24739C A26530R

EPI_ISL_451958 MT500122
 2020-03-16 2020-05-21
 Pakistan SARS-CoV-2/human/PAK/KHI1/2020
 ATTAAAGGTTTATAC1- ATG1605- C1912T C10582T C26022T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_452202
 2020-03-16 2020-05-27
 India hCoV-19/India/NIV-2810/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T T10771C C12312T C17747T A17858G C18060T T28144C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452229
 2020-03-16 2020-05-27
 Sweden hCoV-19/Sweden/20-05819/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452289
 2020-03-16 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20415/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_452292
 2020-03-16 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20418/2020
 C241T C3037T C14408T A20268G A23403G T28382C A29596G G29734C

EPI_ISL_452297
 2020-03-16 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20423/2020
 C241T C1059T C3037T C5365Y C14408T A23403G G25563T

EPI_ISL_452323
 2020-03-16 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20449/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_452328
 2020-03-16 2020-05-27
 China hCoV-19/Beijing/DT-travelPAK01/2020
 C6312A G11083T C13730T C18029T C28311T

EPI_ISL_452335
 2020-03-16 2020-05-27
 China hCoV-19/Beijing/DT-travelUK02/2020
 C3787T T8022G C16362T T19299G C20897T T20901C

EPI_ISL_452343
 2020-03-16 2020-05-27
 China hCoV-19/Beijing/DT-travelES01/2020
 C241T C3037T A23403G

EPI_ISL_454018
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454030
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T C14408T A23403G G24077T C29555T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454038
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454041
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454042
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454043
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C25989T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454044
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4002T G10097A C13536T C14408T C20368A A23403G C23731T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454047
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454337
 2020-03-16 2020-05-28
 Portugal hCoV-19/Portugal/PT0614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T28678C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454762
 2020-03-16 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10013/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G3955T C14408T A23403G G25534T C27046T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_454763
 2020-03-16 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10014/2020
 ATTAAAGGTTTATACC1- C241T C1594T C3037T C8290T C11109T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_454764
 2020-03-16 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10015/2020
 ATTAAA1- G2086T C7528T C8782T G16381A T28144C G28878A G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_454788
 2020-03-16 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordBrabant_10039/2020
 ATTAAAGGTTTAT1- T514C ATG1605- G6662A C16762T T20799C A28664G AAAAAA29898-

EPI_ISL_454946
 2020-03-16 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-189/2020
 AAGATTTTC729-

EPI_ISL_454969
 2020-03-16 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-224/2020
 C26447G

EPI_ISL_455384
 2020-03-16 2020-05-29
 China hCoV-19/Wuhan/HB-WH3-190/2020
 C3717T TG14865- T20965- C23538T

EPI_ISL_455394
 2020-03-16 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-235/2020
 C1185T TA18628- T23563C

EPI_ISL_455397
 2020-03-16 2020-05-29
 China hCoV-19/Wuhan/HB-WH6-244/2020
 TG14865-

EPI_ISL_455947
 2020-03-16 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok-CONI-0154/2020
 ATTAAAGGTTTATACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C

EPI_ISL_456148
 2020-03-16 2020-06-02
 Colombia hCoV-19/Colombia/INS-79890/2020
 C241T C3037T C10507T C14408T C16163T C18877T A23403G G25563T

EPI_ISL_456155
 2020-03-16 2020-06-02
 Colombia hCoV-19/Colombia/INS-80245/2020
 C241T C3037T C7564T C14408T A20268G A23403G G29734C

EPI_ISL_456159
 2020-03-16 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0462/2020
 C1684T G11083T G13627T C14805T C15540T G26144T A28338G A29403G

EPI_ISL_456176
 2020-03-16 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0993/2020
 ATG1605- C8090T T25674C

EPI_ISL_456179
 2020-03-16 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0996/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456180
 2020-03-16 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0999/2020
 C8782T C17747T A17858G C18060T C21614T A24694T A27675C T28144C

EPI_ISL_457753 MT646097
 2020-03-16 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00035/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C20133Y C21575T G26144T

EPI_ISL_457754 MT646098
 2020-03-16 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00039/2020
 C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T C27673Y

EPI_ISL_457789 MT646094
 2020-03-16 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00031/2020
 T490A C3177T C6040T C8782T G12478A T18736C C19488T C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_457803 MT646074
 2020-03-16 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00061/2020
 C241T C3037T C14408T T19839C A23403G C28833T GGG28881AAC

EPI_ISL_457806 MT646076
 2020-03-16 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00064/2020
 C241T C1059T C3037T G10523C C12119T C14408T C18086A A23403G G25563T

EPI_ISL_457820 MT646091
 2020-03-16 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00132/2020
 C241T C3037T C10116T G10697A C14408T C18877T G19847A A23403G G25563T A28480T

EPI_ISL_458230
 2020-03-16 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0316260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4561A A9826G A13947T C14408T G16873A C21676T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459953
 2020-03-16 2020-06-05
 Malaysia hCoV-19/Malaysia/IMR_WC2423/2020
 T2C AA4TG C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_459954
 2020-03-16 2020-06-05
 Malaysia hCoV-19/Malaysia/IMR_WC2453/2020
 -2AGCTAAATCTTCTGAA -5TTGGTGAGAATGTCCATGTAGTTAACTTT C2508A C6310A C6312A G11083T C13730T C19524T C23929T C28311T ATGA29866GCTG AA29871CT A29874T AAA29876TGG A29881G AAAAAAAAAAAAAAAAAAAAA29883GC

EPI_ISL_459976
 2020-03-16 2020-06-05
 Morocco hCoV-19/Morocco/6898/2020
 ATTAAAGGTTTATACCTTC1- C241T C2416T C3037T C14408T G16206T A23403G G25563T G29773T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_460048
 2020-03-16 2020-06-05
 United States hCoV-19/USA/MN-MDH-109/2020
 ATTA1- C6312A G11083T C13730T C23929T C28311T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_460049
 2020-03-16 2020-06-05
 United States hCoV-19/USA/MN-MDH-123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_460062
 2020-03-16 2020-06-05
 United States hCoV-19/USA/MN-MDH-72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_460064
 2020-03-16 2020-06-05
 United States hCoV-19/USA/MN-MDH-75/2020
 ATTAAAGGTTTA1- A3069G C8782T C17747T A17858G C18060T C23373T T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_460066
 2020-03-16 2020-06-05
 United States hCoV-19/USA/MN-MDH-79/2020
 C241T C1059T C3037T C14408T A20230G A23403G G25186A G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_460077
 2020-03-16 2020-06-05
 United States hCoV-19/USA/MN-MDH-97/2020
 AT1- C241T C1059T C3037T T4138C C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_460078
 2020-03-16 2020-06-05
 United States hCoV-19/USA/MN-MDH-98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_460224 MT520299
 2020-03-16 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T C22450T A23403G G26995T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460778
 2020-03-16 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16308T T18417C C20148T A23403G C27213T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460779
 2020-03-16 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17125T T17247C G26144T G27201T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460815
 2020-03-16 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T C17762T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460817
 2020-03-16 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1440A C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461116
 2020-03-16 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462416
 2020-03-16 2020-06-08
 Singapore hCoV-19/Singapore/298/2020
 T21728Y A22255R AAAAAAAAAAAA29892-

EPI_ISL_463975
 2020-03-16 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S26/2020
 AT1- C241T C3037T G4201T C14408T A23403G C26527T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_463977
 2020-03-16 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S29/2020
 ATTAA1- C241T C3037T C14408T C19550M A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467094
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001551/2020
 C241T C1059T C3037T T13006C C14408T G17302T G23311T A23403G G25563T C25688T C25693T

EPI_ISL_467099
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001533/2020
 C8782T T9477A C14805T C15654T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467109
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001534/2020
 C8782T T9477A G11083K C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467110
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001547/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467111
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001556/2020
 C8782T T9477A C14805T A23403R G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467119
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001549/2020
 G11083T G26144T TTTTAAAGTTTCCATTTGGAATCTTGAT27264-

EPI_ISL_467131
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001546/2020
 C8782T T9477A C14805T C18452T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467138
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001555/2020
 C241T C3037T C14408T A20268G A23403G C28854T C29870A

EPI_ISL_467140
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001536/2020
 C8782T T9477A C14805T T18168Y A23586G G25979T T28144C C28292A C28657T C28863T C29870A

EPI_ISL_467144
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001535/2020
 C8782T T9477A C9810T C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467151
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001561/2020
 C241T C3037T C14408T A20268G A23403G C28854T C29870A

EPI_ISL_467174
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001539/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467182
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001544/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467183
 2020-03-16 2020-06-12
 Spain hCoV-19/Spain/COV001548/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467604
 2020-03-16 2020-06-14
 United States hCoV-19/USA/NM-UNM-00023/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_467811 MT614523
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2939T C3037T C14408T A23403G G28882T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467813 MT614525
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467814 MT614526
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A A13953G T18736C C21575T C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467815 MT614447
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467817 MT614449
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C12439T C17747T A17858G C18060T T28144C C28770T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467818 MT614450
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8917T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467820 MT614452
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C14408T C22183T A23403G G25563T A26433G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467821 MT614453
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C14408T C22183T A23403G G25563T A26433G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467822 MT614454
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467823 MT614455
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8917T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467824 MT614456
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467831 MT614463
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2840A C8782T C17747T A17858G C18060T C24381T A26045G T28144C C29429A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467833 MT614465
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4455T C14408T G14622A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467835 MT614467
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C19264T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467840 MT614472
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467842 MT614474
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/CA-QDX-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2840A C8782T C17747T A17858G C18060T A22296G A26045G T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467875 MT614538
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NJ-QDX-124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A8031G C8890T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467885 MT614543
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467886 MT614544
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467887 MT614545
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- -11075TTT G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467889 MT614547
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467890 MT614548
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17470T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467891 MT614549
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467893 MT614551
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467897 MT614499
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T A10312G T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467900 MT614502
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467901 MT614503
 2020-03-16 2020-06-15
 United States SARS-CoV-2/human/USA/NY-QDX-72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467978
 2020-03-16 2020-06-16
 United States hCoV-19/USA/CA-SR0455/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_468016
 2020-03-16 2020-06-16
 Australia hCoV-19/Australia/SAP112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_468389 MT628125
 2020-03-16 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1414/2020
 C241T C2788Y C3037T G10793T G12067K C14408T C18877T A23403G G25563T C29311T AAAAAAAAAAAAAA29890-

EPI_ISL_471235
 2020-03-16 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G28871A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471249
 2020-03-16 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471250
 2020-03-16 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471251
 2020-03-16 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4897T C6027T C9962T A10236G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_474833
 2020-03-16 2020-06-23
 Spain hCoV-19/Spain/Alcala_la_Real-COV002890/2020
 C2143T C8782T T9477A C14805T G25785T G25979T A27747G T28144C C28657T C28863T

EPI_ISL_474897
 2020-03-16 2020-06-23
 Spain hCoV-19/Spain/Guadix-COV002887/2020
 C8782T T9477A C14805T G19858T G25979T T28144C C28657T C28863T

EPI_ISL_475092
 2020-03-16 2020-06-23
 Sweden hCoV-19/Sweden/20-08209/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_475093
 2020-03-16 2020-06-23
 Sweden hCoV-19/Sweden/20-08210/2020
 C241T C3037T C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_475094
 2020-03-16 2020-06-23
 Sweden hCoV-19/Sweden/20-08211/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475095
 2020-03-16 2020-06-23
 Sweden hCoV-19/Sweden/20-50362/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_475137
 2020-03-16 2020-06-23
 Sweden hCoV-19/Sweden/20-50370/2020
 C241T C1059T C3037T C5654T C14408T A23403G G25563T

EPI_ISL_475138
 2020-03-16 2020-06-23
 Sweden hCoV-19/Sweden/20-50371/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475813
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C5654T C14408T A23403G A24862G C28629T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475863
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475874
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17325T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475880
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475906
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G20709T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475907
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440R G2891R C7011Y G11083T C14805Y C18086Y G26144K G28842K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475908
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A610G G18985T C19366T G29543T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475909
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475924
 2020-03-16 2020-06-25
 Austria hCoV-19/Austria/CeMM0577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T T12034C C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476817
 2020-03-16 2020-06-26
 Singapore hCoV-19/Singapore/483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C1722T C3037T C11109T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476902 MT827819
 2020-03-16 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-1128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C1238T C8782T C17747T A17858G C18060T T28144C T28924C -29904AAAAAAAAAA

EPI_ISL_477171
 2020-03-16 2020-06-29
 Singapore hCoV-19/Singapore/481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5230T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477193
 2020-03-16 2020-06-29
 Italy hCoV-19/Italy/IZSPB_45/2020
 ATTA1- GTT8AGC C241T C3037T C14408T A23403G A29879T A29881T AAAAAAAAAAAAAAAAAAAAA29883T

EPI_ISL_477194
 2020-03-16 2020-06-29
 Italy hCoV-19/Italy/IZSPB_39/2020
 -2AGGGA C241T C3037T G3066A C14408T A23403G GGG28881AAC GTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29747T

EPI_ISL_478537
 2020-03-16 2020-06-30
 United Kingdom hCoV-19/England/NORT-284248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A19960G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478539
 2020-03-16 2020-06-30
 United Kingdom hCoV-19/England/NORT-284266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479868
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAAC1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479891
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479892
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- T4402C G5062T C8782T T28144C G29742T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_479893
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479894
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G25563C GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479895
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T C3037T C8139T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479898
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C10833T G13379A C14408T C18877T A23403G G25563T C25585T C26735T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479899
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C10833T C14408T C16173T C18877T A23403G G25563T C26735T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479900
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C10833T C14408T C18877T A23403G G25563T C26735T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_479933
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T G2164A C3037T C14408T A23403G G28514T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479937
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G C28093T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480227
 2020-03-16 2020-07-01
 Japan hCoV-19/Japan/PG-0186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C AGTT27620- T28144C G28878A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480381 MT772548
 2020-03-16 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3046G C8782T A16467G C17747T A17858G C18060T C23185T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480382 MT772549
 2020-03-16 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1912T A2501G A18153G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481004
 2020-03-16 2020-07-02
 Spain hCoV-19/Spain/Donostia-San_Sebastian_COV003260/2020
 C241T C3037T G4255T C6696T C14408T A20268G A23403G

EPI_ISL_481569
 2020-03-16 2020-07-03
 Finland hCoV-19/Finland/16M18/2020
 C241T C3037T C9803T C14408T A23403G C25728T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482470
 2020-03-16 2020-07-03
 Canada hCoV-19/Canada/NS_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G701T C1059T C3037T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482478
 2020-03-16 2020-07-03
 Canada hCoV-19/Canada/MB_71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G28851T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482481
 2020-03-16 2020-07-03
 Canada hCoV-19/Canada/MB_76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482482
 2020-03-16 2020-07-03
 Canada hCoV-19/Canada/MB_78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_483059
 2020-03-16 2020-07-07
 Spain hCoV-19/Spain/IrsiCaixa-Own160320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTT1- C241T C3037T C14408T A20268G T20644C A23403G GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_483931
 2020-03-16 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D25D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484339
 2020-03-16 2020-07-08
 United Kingdom hCoV-19/England/NOTT-10DE9F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2940T G11083T C14805T G26144T C29525T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486431
 2020-03-16 2020-07-10
 Latvia hCoV-19/Latvia/047/2020
 C241T C3037T G11083T T11638C C14408T C18312T A23403G GGG28881AAC C29708T

EPI_ISL_486432
 2020-03-16 2020-07-10
 Latvia hCoV-19/Latvia/048/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T

EPI_ISL_486433
 2020-03-16 2020-07-10
 Latvia hCoV-19/Latvia/049/2020
 C241T C3037T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_486434
 2020-03-16 2020-07-10
 Latvia hCoV-19/Latvia/050/2020
 C241T C3037T C8814T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_488485
 2020-03-16 2020-07-14
 United Kingdom hCoV-19/England/NORT-284275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488750
 2020-03-16 2020-07-14
 United Kingdom hCoV-19/England/NORT-2814EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C874T C2416T C3037T C14408T G16245A C19524T A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488767
 2020-03-16 2020-07-14
 United Kingdom hCoV-19/England/NORT-2814AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488772
 2020-03-16 2020-07-14
 United Kingdom hCoV-19/England/NORT-281445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488785
 2020-03-16 2020-07-14
 United Kingdom hCoV-19/England/NORT-2814DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C13119T C14805T G21372T A23403G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491000
 2020-03-16 2020-07-15
 United States hCoV-19/USA/MN-UW-MAYO71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C9661T C14408T A21845G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_491449
 2020-03-16 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C44G A46T CT48TG C241T C3037T C6696T C14408T A20268G A23403G A29886T AA29888GC AAA29891TTC A29897C AAAAA29899-

EPI_ISL_492536
 2020-03-16 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130BC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492544
 2020-03-16 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130B50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492659
 2020-03-16 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130BD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2706T A7025G C9724T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493198
 2020-03-16 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-002/2020
 ATTAAAGGTTT1- G11083T C11704T C14805T T17247C C24579T G26144T A29884C AA29887GC A29890G -29892TGGTAAATGATTTCCCAGGGCTCTGTGTATATCTCCT A29895G A29897G -29901CCTATAGGAATGCTCAGCCTCATCCCTGGCAGCGGCTCTCCCCAGCGCC -29904GGGTGAGATCTG

EPI_ISL_493741
 2020-03-16 2020-07-21
 United Kingdom hCoV-19/Scotland/CVR111/2020
 ATTAAAGGTTTATACCTTCCCA1- C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T AAAAAA29898-

EPI_ISL_494592
 2020-03-16 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_497845
 2020-03-16 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498030
 2020-03-16 2020-07-26
 South Korea hCoV-19/Korea/KCDC2129/2020
 ATTAAAGGTT1- A2480G C2558T G11083T C14805T G26144T AA29902-

EPI_ISL_498031
 2020-03-16 2020-07-26
 South Korea hCoV-19/Korea/KCDC2130/2020
 ATTAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_498036
 2020-03-16 2020-07-26
 South Korea hCoV-19/Korea/KCDC2135/2020
 ATTAAAGG1- G5572T G11083T G13564T C14805T G15708T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_499460
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C9746T C14408T A23403G TTTTAAAGTTTCCATTTGGAATCTTGA27264-

EPI_ISL_499467
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A67BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- G18315A

EPI_ISL_499728
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T22031K A23403G C27323T GGG28881AAC

EPI_ISL_499734
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A66FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_499751
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A68AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G C9223T G11083T C14805T T17247C G26144T C29114A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499757
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A695C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499760
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A69C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_499761
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A69D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T T18573A T22573C A23403G C23731T GGG28881AAC

EPI_ISL_499762
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A69E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C4668T G7312R C26447T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499763
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A69F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G284T A2480G C2558T A4595M G11083T G12824A C14805T G26144T C29870A

EPI_ISL_499767
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6A59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C29870A

EPI_ISL_499768
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6A77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14267Y C14408T T23284C A23403G G25563T C29870A

EPI_ISL_499771
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6AE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C29870A

EPI_ISL_499772
 2020-03-16 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6AFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500516
 2020-03-16 2020-07-29
 United States hCoV-19/USA/MN-UW-MAYO72/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C3784T C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_500520
 2020-03-16 2020-07-29
 United States hCoV-19/USA/LA-UW-MAYO86/2020
 T2- C36T C241T C1059T C3037T C10319T C14408T C17676T A23403G G25563T C27964T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_500629
 2020-03-16 2020-07-29
 Australia hCoV-19/Australia/NSW2148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G578A C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500630
 2020-03-16 2020-07-29
 Australia hCoV-19/Australia/NSW2149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500631
 2020-03-16 2020-07-29
 Australia hCoV-19/Australia/NSW2151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507023 MT820474
 2020-03-16 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1973T C3037T C14408T G19276A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508130
 2020-03-16 2020-08-04
 Australia hCoV-19/Australia/SAP439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T C23929T C28311T

EPI_ISL_508869
 2020-03-16 2020-08-04
 Switzerland hCoV-19/Switzerland/1000484569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_508879
 2020-03-16 2020-08-04
 France hCoV-19/France/ARA10160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTG1- C241T C3037T C14408T C15324T A23403G C25433T C29546T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508880
 2020-03-16 2020-08-04
 France hCoV-19/France/ARA10175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C15324T A23403G C25433T C29546T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508881
 2020-03-16 2020-08-04
 France hCoV-19/France/ARA10242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509003
 2020-03-16 2020-08-04
 France hCoV-19/France/ARA9584/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G11083T C14408T A23403G G25563T C27213T G28346T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509004
 2020-03-16 2020-08-04
 France hCoV-19/France/ARA9476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- A2480G C2558T G11083T C14805T G24095T G25287T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_509616
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV001537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A T10455G G11944R C14805T G25979T T28144C C28291T C28657T C28863T C29870A

EPI_ISL_509625
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV001995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C11674T C14805T G25979T G27112A T28144C C28657T C28863T G29402T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509626
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV001996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G2418A C10369Y G11083T A16815R G26144T T27991C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509627
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV002016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A G11083K C11674Y C14805T G25979T G27112A T28144C C28657T C28863T G29402T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509628
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV002017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509629
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV002019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A3672C C8782T T9477A C14805T G25979T T28144C C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509630
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV002020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509631
 2020-03-16 2020-08-05
 Spain hCoV-19/Spain/COV002023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C11674Y C14805T T19503C G25979T T28144C C28657T C28863T G29402T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_510248
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G5230T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510251
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C9661Y C14408T A20268G C22088T A23403G A29086T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_510252
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510253
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T T9477A C12513T C14805T T23590A A25765T G25979T C26681T T28144C C28657T C28863T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_510256
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510257
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_510259
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_510260
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T A10761G C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510263
 2020-03-16 2020-08-06
 Spain hCoV-19/Spain/COV003167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2592T C3037T G5230T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510529 MT790522
 2020-03-16 2020-07-22
 Zambia SARS-CoV-2/human/ZMB/29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C3796T T11725C C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_511037
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT0778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C7869T G11083T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511042
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT0783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511043
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT0784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511211
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT1250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511385
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT1426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511389
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT1430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3924T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511426
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT1467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C12253T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511427
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT1468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C12253T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511459
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT1500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T C21575T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511462
 2020-03-16 2020-08-07
 Portugal hCoV-19/Portugal/PT1503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511642
 2020-03-16 2020-08-08
 Portugal hCoV-19/Portugal/PT1095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C16376T A20268G A23403G C29304T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511643
 2020-03-16 2020-08-08
 Portugal hCoV-19/Portugal/PT1096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G11083T G26144T C26873T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511645
 2020-03-16 2020-08-08
 Portugal hCoV-19/Portugal/PT1098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A28779G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511894
 2020-03-16 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_0897/2020
 ATTAAAGGTTTATACC1- T25G A29T C241T C3037T C14408T A23403G C26256T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_511895
 2020-03-16 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_0899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T9172C A10948G C14408T C14793T A23403G G26730T GGG28881AAC G29262T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_513437 MT886311
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513439 MT886313
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C2416T C3037T G4510T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513440 MT886314
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C2416T C3037T G11534A C14408T A23403G G25563T G26233T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513442 MT886316
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- T490A C3177T C4543T G4720T C8782T T18736C G19684T C24034T C26681T T26729C C27635T G28077C T28144C A29700G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513447 MT886321
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513448 MT886322
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513449 MT886323
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTG1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513450 MT886324
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCA1- C241T C3037T C14408T C22450T A23403G C28087T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513451 MT886325
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_513453 MT886327
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C18877T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513455 MT886329
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T A29700G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513456 MT886330
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513463 MT886337
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- A5317G C8782T C17747T A17858G C18060T G19086T A19476G T28144C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513466 MT886340
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCT1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513467 MT886341
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- A5317G C8782T C17747T A17858G C18060T G19086T A19476G T28144C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513470 MT886344
 2020-03-16 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- G1440A G2891A C7011T G25593C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513511
 2020-03-16 2020-08-13
 Czech Republic hCoV-19/Czech Republic/NRL_2676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514637 MT892984
 2020-03-16 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1418/2020
 ATT1- T490A C3177T C8782T C10228T T18736C C24034T T26729C C27635T G28077C T28144C A29700G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515307
 2020-03-16 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0020/2020
 ATT1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_516863
 2020-03-16 2020-08-24
 United Kingdom hCoV-19/England/LOND-126090E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1368C C6990T G11083T C14805T C23707T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516987
 2020-03-16 2020-08-24
 Peru hCoV-19/Peru/INS-066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_518874 MT920013
 2020-03-16 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C775T C1059T C3037T C5183T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518880 MT920020
 2020-03-16 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1487/2020
 ATTA1- C8782T C17747T A17858G C18060T A24694T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523525
 2020-03-16 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523954
 2020-03-16 2020-08-27
 Peru hCoV-19/Peru/LAM-INS-071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC AGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29714-

EPI_ISL_524653
 2020-03-16 2020-08-28
 United Kingdom hCoV-19/England/LOND-126041C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524658
 2020-03-16 2020-08-28
 United Kingdom hCoV-19/England/LOND-126042B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525539
 2020-03-16 2020-08-31
 France hCoV-19/France/ARA10259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C22088T C23127T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525553
 2020-03-16 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-102/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_525556
 2020-03-16 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-22/2020
 A1CCACCGA C241T C3037T G5515T T8729G C14408T A23403G A26530G G27204T TAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29823-

EPI_ISL_525570
 2020-03-16 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-6/2020
 A1GGACCGGA C241T C3037T C14408T T16926C A23403G GGG28881AAC AA29881TG AAAAAAAAAAAAAAAAAAAA29884C

EPI_ISL_525615
 2020-03-16 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-17364-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_525616
 2020-03-16 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-17549-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525619
 2020-03-16 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-19679-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_525622
 2020-03-16 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-22513-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T1303C C3037T G10265A C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_526946
 2020-03-16 2020-09-02
 Denmark hCoV-19/Faroe Islands/HFS-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1302T C3037T C14408T C16806T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_528125
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42192108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528127
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T G22487C A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528128
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G C25658T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528129
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528131
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42192855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528132
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528133
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42192884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A187G C241T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528135
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42192918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2944A C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528137
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42192943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- C241T C3037T G12070T C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528138
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42192965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G18106T C21110T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528139
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42192973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528140
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/Waadt-UHB-42192980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12676T C14408T C15324T G22035A A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528141
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42193014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528142
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42193056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528143
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42193080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528146
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42193250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528147
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42193254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528148
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42193283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528149
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42193328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G C25207T G26153C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528151
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42193780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC C29627T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528154
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42194077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C643T C3037T C3787T C14408T C15324T A23403G T27206C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528155
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42194080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C643T C3037T C3787T C14408T C15324T A23403G T27206C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528157
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42194287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G15982T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528158
 2020-03-16 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42194288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G15982T A23403G TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_528637
 2020-03-16 2020-09-08
 Brazil hCoV-19/Brazil/RJ-MD63-1a/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T T21765A A21958G A23403G T27299C GGG28881AAC T29148C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_528638
 2020-03-16 2020-09-08
 Brazil hCoV-19/Brazil/RJ-MD63-1b/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_529962
 2020-03-16 2020-09-10
 Indonesia hCoV-19/Indonesia/JI-ITD-150Sp/2020
 ATTAAAGGTTTAT1-

EPI_ISL_530037
 2020-03-16 2020-09-10
 Spain hCoV-19/Spain/MD-LP108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_535809
 2020-03-16 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00221605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535813
 2020-03-16 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00222020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T G21641T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535815
 2020-03-16 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00222035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C11916T C14408T G15910K G21641T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535818
 2020-03-16 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00222731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535819
 2020-03-16 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00222823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2070T C6312A C8326T G11083T C13730T C23929T C26807T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535829
 2020-03-16 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T11611C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535838
 2020-03-16 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15222T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536537
 2020-03-16 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-142/2020
 ATTAAAG1- C8782T C17747T A17858G C18060T A24694T T28144C A29891T

EPI_ISL_536538
 2020-03-16 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-143/2020
 ATTAAAG1- C241T C1179T C3037T C4002T G10097A C13536T C14408T G15285T A23403G C23731T GGG28881AAC

EPI_ISL_537586
 2020-03-16 2020-09-16
 United States hCoV-19/USA/CA-UCLA-60/2020
 ATTAAAGGTTTATACCTTCC1- G2305T G11083T G11108T C14805T A15779C T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_538050
 2020-03-16 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4105T C14408T A20268G A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_538051
 2020-03-16 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C14408T A23403G G25062T G25563T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_538052
 2020-03-16 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T G1882T C3037T C14408T A23403G C29144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538054
 2020-03-16 2020-09-16
 Spain hCoV-19/Spain/VC-CSIC-98003118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538437
 2020-03-16 2020-09-17
 Singapore hCoV-19/Singapore/46nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15349C C20031A A23403G C27046T GGG28881AAC G29392T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538438
 2020-03-16 2020-09-17
 Singapore hCoV-19/Singapore/914/2020
 CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_538447
 2020-03-16 2020-09-17
 Singapore hCoV-19/Singapore/148nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G252T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539521
 2020-03-16 2020-09-18
 Spain hCoV-19/Spain/CE-ISCIII-203352/2020
 C1342T A1830G G11083T C14805T TGT22643ACA T22655C TCT22658CTG G26144T

EPI_ISL_541342
 2020-03-16 2020-09-22
 Brazil hCoV-19/Brazil/PR-5619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G4201T C4320T C14408T G18973K A23403G C26527T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_547464
 2020-03-16 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C906T C1594T C3037T G5425T C11109T C14408T A23403G G25563T C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547503
 2020-03-16 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547504
 2020-03-16 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C4189T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547529
 2020-03-16 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2086T C7528T C8782T G16381A T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548356
 2020-03-16 2020-09-26
 United States hCoV-19/USA/CA-CZB-3637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C3874Y C14408T C21304T A23403G G25563T C27964T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_566028
 2020-03-16 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_568920
 2020-03-16 2020-10-02
 France hCoV-19/France/IHU-0662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T C26873T G29711C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568922
 2020-03-16 2020-10-02
 France hCoV-19/France/IHU-0670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C541T C1059T C3037T G10835A G11083T C14408T A23403G G25563T C29670T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569338
 2020-03-16 2020-10-02
 France hCoV-19/France/IHU-0152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT374112
 2020-03-16 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-16/2020
 AT1- C241T C3037T C14408T C17004T C18877T G21204T A23403G G25563T G25767T

MT415322
 2020-03-16 2020-04-30
 India SARS-CoV-2/human/IND/GMCKN443/2020
 ATTAAAGGTTT1- C1707Y C6312A G11083T C13730T C19524Y C23929T C28311T G29868R C29870A

MT459859
 2020-03-16 2020-05-11
 Greece SARS-CoV-2/human/GRC/143_34652/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459860
 2020-03-16 2020-05-11
 Greece SARS-CoV-2/human/GRC/144_34723/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G11083T C14805T T17247C G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459869
 2020-03-16 2020-05-11
 Greece SARS-CoV-2/human/GRC/156_34721/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT477836
 2020-03-16 2020-05-14
 United States SARS-CoV-2/human/USA/AK006/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509488
 2020-03-16 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G10523C C12119T C14408T C18086A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706134
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706136
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G28871A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706137
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C7945T C8782T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706141
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706142
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G28871A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706291
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706292
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19101T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706376
 2020-03-16 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C8016T C14408T T15366C A23403G G25563T G28903T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810500
 2020-03-16 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1419-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810577
 2020-03-16 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0455-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT907515
 2020-03-16 2020-08-20
 Venezuela SARS-CoV-2/human/VEN/1Z/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- T1116C C8782T T9477A C14805T A15498G G23516A G23724T G25979T T28144C C28657T C28863T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MW008567
 2020-03-16 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-037K/2020
 ATTAAA1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MW008570
 2020-03-16 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-041O/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAA29893-

MW008571
 2020-03-16 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-042P/2020
 ATTAAA1- T490A C3177T C8782T T18736C C24034T C25844T T26729C G28077C T28144C A29700G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MW030206
 2020-03-16 2020-09-22
 Peru SARS-CoV-2/human/PER/covper066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTC1- C8782T C17747T A17858G C18060T A24694T T28144C C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030207
 2020-03-16 2020-09-22
 Peru SARS-CoV-2/human/PER/covper067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C1179T C3037T C4002T G10097A C13536T C14408T G15285T A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW047016
 2020-03-16 2020-09-29
 United States SARS-CoV-2/human/USA/GA-EHC-033G/2020
 ATTAAA1- T490A C3177T T3478A C3602T C8782T T18736C C21811T C24034T T26729C C27635T G28077C T28144C A29700G C29739T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MW047017
 2020-03-16 2020-09-29
 United States SARS-CoV-2/human/USA/GA-EHC-049W/2020
 ATTAAAGGTTTATA1- C241T C1059T G2914A C3037T C14408T C16260T A23403G G25563T C28821A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_415464 LR878343
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/Limburg_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- G1440A G2891A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415499 LR878073
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1594T C3037T C11109T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415507 LR878076
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415509 LR878088
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- G2323T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415517 LR878105
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C16762T C16996T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415518 LR878101
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415519 LR878093
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C16762T C16996T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415520 LR878104
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415521 LR878106
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- T514C ATG1605- C6255T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_415523 LR878107
 2020-03-17 2020-03-17
 Netherlands hCoV-19/Netherlands/NoordBrabant_67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_416426
 2020-03-17 2020-03-21
 Hungary hCoV-19/Hungary/mbl1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G25483A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417408
 2020-03-17 2020-03-25
 Australia hCoV-19/Australia/NSW56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1515G C9223T G11083T C14805T T17247C A17799G C23987T G26144T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417411
 2020-03-17 2020-03-25
 Australia hCoV-19/Australia/NSW61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2416T C3037T C14408T C21595T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417412
 2020-03-17 2020-03-25
 Australia hCoV-19/Australia/NSW62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1440A G2891A C7011T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_417413
 2020-03-17 2020-03-25
 Turkey hCoV-19/Turkey/6224-Ankara1034/2020
 C100A T580A G779C T946A TC1100GT A1106T A1119C A1134T G1156A G1210A C1225A T1359C G1397A C1420T G1470A C1473T A1475C G2250A C2455T A2475T G2549C T2586A G2591A G2612C G2715T A2932G C3117T G3146C C3787T C4084T C7392T T10532A C11232T G11234A C13476T C13492T C14286T G14310A T14394A C14407A G14430A G14443T T14682G G14710A T14740C C14763A G14773T T14808A C15101A T15119A G15958A C19763A T26396A T26551C C26753T C27103T G28109T T28688C G29742T

EPI_ISL_417437
 2020-03-17 2020-03-25
 Democratic Republic of the Congo hCoV-19/DRC/KN-0054/2020
 A1- C241T C3037T C14408T C15324T G15444T A23403G G28202A

EPI_ISL_417507
 2020-03-17 2020-03-27
 United States hCoV-19/USA/WI-UW-23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417515
 2020-03-17 2020-03-27
 United States hCoV-19/USA/WI-UW-18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417538
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/104/2020
 C241T C3037T G10097A T13216G C14408T T20923C A23403G C23731T GGG28881AAC

EPI_ISL_417540
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/115/2020
 T3034C G11083T C14805T C16054T T17247C T17859C G26144T G29751C

EPI_ISL_417541
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/116/2020
 T3034C G11083T C14805T C16054T T17247C T17859C G26144T G29751C

EPI_ISL_417542
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/117/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417543
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/118/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417544
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/119/2020
 C5142T C10641T G11083T C14805T T17247C G26144T

EPI_ISL_417545
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/120/2020
 T3034C G11083T C14805T C16054T T17247C T17859C G26144T G29751C

EPI_ISL_417548
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/170/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417555
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/227/2020
 C186T C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417556
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/228/2020
 G102A C241T C3037T T3793C C14408T A16311G A23403G C23575T C28519T G29513T

EPI_ISL_417557
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/229/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417558
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/230/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417560
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/232/2020
 C241T C3037T C14408T A23403G A26530G G29706T

EPI_ISL_417561
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/233/2020
 C241T C313T C3037T C14408T C20178T A23403G GGG28881AAC

EPI_ISL_417562
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/234/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417564
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/236/2020
 C241T C3037T A8072G C14408T A23403G GGG28881AAC

EPI_ISL_417565
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/237/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_417566
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/238/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417567
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/239/2020
 C241T C3037T C14408T A23403G G27430A GGG28881AAC

EPI_ISL_417568
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/240/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_417569
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/241/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_417570
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/242/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417571
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/243/2020
 C241T C3037T C14408T A23403G G25249T C26461T C27046T GGG28881AAC

EPI_ISL_417572
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/244/2020
 C241T C3037T C11322T C14408T A23403G

EPI_ISL_417574
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/246/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_417575
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/247/2020
 C241T C3037T C14408T A23403G G25249T C26461T C27046T GGG28881AAC

EPI_ISL_417576
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/248/2020
 C1218T C5696T G27806T G29711T

EPI_ISL_417577
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/249/2020
 C8782T T9445C C17430T T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417580
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/252/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_417581
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/253/2020
 C241T C3037T C4002T G10097A C13536T C14408T C19718T A23403G C23731T GGG28881AAC

EPI_ISL_417582
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/254/2020
 C241T C3037T C14408T A23403G A24862G

EPI_ISL_417583
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/255/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417584
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/256/2020
 A2480G C2558T T10480C G11083T C14805T T26130C G26144T C27559T

EPI_ISL_417585
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/257/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_417586
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/258/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417587
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/259/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_417588
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/260/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417589
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/261/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_417591
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/263/2020
 

EPI_ISL_417592
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/264/2020
 C241T C3037T C13862T C14408T A23403G C28836T

EPI_ISL_417593
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/265/2020
 C241T C1059T C3037T C14408T A23403G G25563T TT27264-

EPI_ISL_417594
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/266/2020
 C241T C1059T C3037T C14408T A23403G G25563T TT27264-

EPI_ISL_417595
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/267/2020
 C241T G526T C1218T C2973T C3037T C12138T C14408T A23403G GGG28881AAC

EPI_ISL_417597
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/269/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417598
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/270/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_417600
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/272/2020
 C241T C3037T AAT6506- A10323G C14408T A20268G A23403G

EPI_ISL_417602
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/274/2020
 

EPI_ISL_417603
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/275/2020
 T3034C C6317T G11083T C14805T C16054T T17247C T17859C G26144T C28622T G29751C

EPI_ISL_417607
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/279/2020
 C5142T G11083T C14805T T17247C A20288G G26144T

EPI_ISL_417608
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/280/2020
 C241T C3037T C5730T G10870T C14408T G15850T A23403G G23587T GGG28881AAC

EPI_ISL_417609
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/281/2020
 C241T C3037T C14408T C17104T A20268G A23403G G29734C

EPI_ISL_417612
 2020-03-17 2020-03-27
 Iceland hCoV-19/Iceland/284/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_418023
 2020-03-17 2020-03-28
 Portugal hCoV-19/Portugal/PT0038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25916T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418024
 2020-03-17 2020-03-28
 Portugal hCoV-19/Portugal/PT0039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4047A C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418025
 2020-03-17 2020-03-28
 Portugal hCoV-19/Portugal/PT0040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G11083T T14295C C19273T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418026
 2020-03-17 2020-03-28
 Portugal hCoV-19/Portugal/PT0041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- T514C ATG1605- C28923T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_418183
 2020-03-17 2020-03-28
 Hungary hCoV-19/Hungary/mbl2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29266T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418193
 2020-03-17 2020-03-28
 United States hCoV-19/USA/NY-NYUMC8/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_418198
 2020-03-17 2020-03-28
 United States hCoV-19/USA/NY-NYUMC13/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_418199
 2020-03-17 2020-03-28
 United States hCoV-19/USA/NY-NYUMC14/2020
 C241T C1059T C3037T C11916T C14408T C18998T T23032C A23403G G25563T G29540A

EPI_ISL_418203
 2020-03-17 2020-03-28
 United States hCoV-19/USA/NY-NYUMC18/2020
 C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_418204
 2020-03-17 2020-03-28
 United States hCoV-19/USA/NY-NYUMC19/2020
 C241T C1059T A2018G C3037T C14408T T21995C A23403G G25563T

EPI_ISL_418257
 2020-03-17 2020-03-17
 Italy hCoV-19/Italy/TE5056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T A538W C3037T C4668M T7396W TG8827WK C14408T A23403G GGG28881AAC AAA29901-

EPI_ISL_418295
 2020-03-17 2020-03-17
 United Kingdom hCoV-19/England/SHEF-BFE06/2020
 A2480G C2558T G11083T C14805T G26144T C26735T C26885T

EPI_ISL_418420
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10170/2020
 C241T C1059T C3037T T13006C C14391T C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418422
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10184/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_418423
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10188/2020
 C241T C3037T C14408T A14485G C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_418424
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10189/2020
 C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_418425
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10192/2020
 C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418426
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10251/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418427
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10257/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418428
 2020-03-17 2020-03-17
 France hCoV-19/France/ARA10282/2020
 C241T C313T C3037T A3076T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418632
 2020-03-17 2020-03-30
 Belgium hCoV-19/Belgium/ULG-7500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418635
 2020-03-17 2020-03-30
 Belgium hCoV-19/Belgium/ULG-8532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G21123T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418679
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20122119202/2020
 G1440A G2891R A27669G

EPI_ISL_418680
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20122119302/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_418681
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20122119502/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_418687
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124002002/2020
 C1919Y C5893Y G11083T C14805T T17247C C25214T G26144T

EPI_ISL_418690
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124003702/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_418691
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124003902/2020
 C1191Y G1440A G2891R C14411Y C27429Y A27669G

EPI_ISL_418692
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124004302/2020
 A2480G C2558T G11083T C14805T C21411T G26144T

EPI_ISL_418698
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124012702/2020
 T1477A A2480G C2558T G11083T C14805T C22088T G25595K C25844Y G26144T

EPI_ISL_418700
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124013202/2020
 ATG1605- C20270T A29683T

EPI_ISL_418701
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124020402/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_418704
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124021402/2020
 C241T C3037T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_418706
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124029802/2020
 A2480G C2558T C5301T G11083T C14805T T22144C G26144T

EPI_ISL_418707
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124030003/2020
 T1368C C6990T G11083T C14805T C23707T G26144T C28093Y

EPI_ISL_418708
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20124030802/2020
 C241T C3037T C14408T C20844Y A23403G C26534Y GGG28881AAC

EPI_ISL_418756
 2020-03-17 2020-03-30
 United Kingdom hCoV-19/England/20126012702/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_418864 MT322394
 2020-03-17 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T A24694T T28144C C29870A

EPI_ISL_418929 MT263442
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A C29870M A29903-

EPI_ISL_418930 MT263443
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AACC34TTTA C8782T T15927G C17747T A17858G C18060T C18401T C24795T C26936T T28144C AAAAAAA29897-

EPI_ISL_418931 MT263444
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW364/2020
 ATTAAAGGT1- TACCTTCCCAGGTAACAAACCAACC13- A55M C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAA29892-

EPI_ISL_418933 MT263446
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW366/2020
 ATTAAA1- A35T C37H C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_418934 MT263447
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW367/2020
 ATTAAAGGT1- TACCTTCCCAGGTAACAAACCAACC13- C8782T T15927G C17747T A17858G C18060T C26936T T27722C T28144C A29903-

EPI_ISL_418936 MT263449
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_418937 MT263450
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C8782T C17747T A17858G C18060T G21893A C27276T T27384C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_418939 MT263452
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW372/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T T16299C C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_418943 MT263456
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_418954 MT263468
 2020-03-17 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW388/2020
 ATTAAAG1- ACC35TYH C241T C1059T C3037T C14408T A23403G G25523T G25563T T27869C AAAA29900-

EPI_ISL_418956 MT322395
 2020-03-17 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C3589T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418957
 2020-03-17 2020-03-31
 United States hCoV-19/USA/VA-DCLS-0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C3589T C8782T C13138T C17747T A17858G C18060T T28144C C29870A

EPI_ISL_418958
 2020-03-17 2020-03-31
 United States hCoV-19/USA/VA-DCLS-0004/2020
 ATTAAAGGTT1- C3589T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_418972
 2020-03-17 2020-03-31
 United States hCoV-19/USA/NY-NYUMC26/2020
 C241T C1059T C3037T C12081T C14408T A23403G G25563T

EPI_ISL_418973
 2020-03-17 2020-03-31
 United States hCoV-19/USA/NY-NYUMC27/2020
 C241T C1059T C3037T C4113T T11522G C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_418974
 2020-03-17 2020-03-31
 United States hCoV-19/USA/NY-NYUMC28/2020
 C241T C1059T C3037T C14408T A17457G C17518T A23403G G25563T

EPI_ISL_418976
 2020-03-17 2020-03-31
 United States hCoV-19/USA/NY-NYUMC30/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_418977
 2020-03-17 2020-03-31
 United States hCoV-19/USA/NY-NYUMC31/2020
 A2480G C2558T G4207T G11083T C14805T C17010A C19027T C21575T G26144T

EPI_ISL_418978
 2020-03-17 2020-03-31
 United States hCoV-19/USA/NY-NYUMC32/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_418980
 2020-03-17 2020-03-31
 United States hCoV-19/USA/NY-NYUMC34/2020
 C241T C1059T C3037T C5654T C14408T A23403G G25563T

EPI_ISL_419168
 2020-03-17 2020-04-01
 France hCoV-19/France/ARA10552/2020
 C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419304 LC547526
 2020-03-17 2020-04-02
 Japan hCoV-19/Japan/P4-4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419406
 2020-03-17 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-243D0/2020
 A2480G C2558T G11083T C14805T G26144T A29031G A29865R

EPI_ISL_419409
 2020-03-17 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-24419/2020
 AT1- G1440A G2891A G28851T

EPI_ISL_419428
 2020-03-17 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-2458F/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_419440
 2020-03-17 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-246B9/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419814 MT451013
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T490A C3177T C8782T T18736C G19684T C24034T A25050G T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419818 MT451014
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C379A C1059T A1308G C3037T C7420T C14408T T21980G A23403G G25563T

EPI_ISL_419819 MT451015
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC105/2020
 A1- A4T C241T C3037T C14408T T18381C C18877T A23403G G25563T

EPI_ISL_419820
 2020-03-17 2020-04-03
 Australia hCoV-19/Australia/VIC106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C17375T A20268G A23403G C28854T

EPI_ISL_419841 MT451048
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G T25473C GGG28881AAC

EPI_ISL_419842 MT451049
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC145/2020
 AT1- T1368C C6990T G11083T C14805T G18985T C23707T G26144T G28378T

EPI_ISL_419843 MT451050
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC146/2020
 ATTA1- C40M C2558T G11083T C14805T C25207T G26144T

EPI_ISL_419844 MT451051
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC147/2020
 ATTAAAGGT1- C241T C379A C1059T C3037T C14408T C22224T A23403G G25563T G27163T

EPI_ISL_419845 MT451052
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC148/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419846 MT451053
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6504T C14408T A22962T A22964T A23403G G27996T

EPI_ISL_419847 MT451054
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C683T C3177T C8782T C11833Y T18736C G19684T C24034T G24914S T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419848 MT451055
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C5884T C8782T G11083T C14805T T17247C A17858G G26144T

EPI_ISL_419849 MT451056
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC152/2020
 ATTAAAGGTTTATACC1- G11083T C14805T T17247C G26144T

EPI_ISL_419850 MT451057
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC153/2020
 A1- C241T C313T C3037T C14408T C22224T A23403G GGG28881AAC

EPI_ISL_419851 MT451058
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3784T C14408T A20268G A23403G

EPI_ISL_419852 MT451059
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC155/2020
 ATTAAAGG1- C241T C1059T C2523T C3037T C14408T A23403G G25563T

EPI_ISL_419853 MT451060
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419854 MT451061
 2020-03-17 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC157/2020
 ATTA1- C241T C3037T C14408T C17104T A20268G A23403G G29734C

EPI_ISL_420038
 2020-03-17 2020-04-04
 France hCoV-19/France/BFC2709/2020
 C241T C3037T G3728T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420041
 2020-03-17 2020-04-04
 France hCoV-19/France/HF2748/2020
 C241T C2416T C3037T C14408T A23403G G25563T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_420042
 2020-03-17 2020-04-04
 France hCoV-19/France/IDF2768/2020
 C241T C2416T C3037T C14408T A23403G G25563T C29416T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_420045
 2020-03-17 2020-04-04
 France hCoV-19/France/GE2843/2020
 C241T C2416T C3037T C7224T C7819T C9430T C14408T G16846T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_420046
 2020-03-17 2020-04-04
 France hCoV-19/France/IDF2848/2020
 C241T C3037T T4258C C14408T C15324T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_420055
 2020-03-17 2020-04-04
 France hCoV-19/France/GE3067/2020
 C241T C3037T C14408T C15324T C18570T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_420069
 2020-03-17 2020-04-04
 Senegal hCoV-19/Senegal/306/2020
 G1440A G2891A

EPI_ISL_420070
 2020-03-17 2020-04-04
 Senegal hCoV-19/Senegal/315/2020
 C241T C3037T C14408T C15324T C19602T C21622T A23403G

EPI_ISL_420151
 2020-03-17 2020-04-05
 Norway hCoV-19/Norway/2087/2020
 ATTAAAGGTT1- T3835Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_420152
 2020-03-17 2020-04-05
 Norway hCoV-19/Norway/2088/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A20268G A23403G C28854T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_420289
 2020-03-17 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0619/2020
 C241T A2869G C3037T C14408T A23403G GGG28881AAC C29095T

EPI_ISL_420361
 2020-03-17 2020-04-06
 Belgium hCoV-19/Belgium/GE-0317105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420570
 2020-03-17 2020-04-06
 United States hCoV-19/USA/NY-NYUMC55/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_420572
 2020-03-17 2020-04-06
 United States hCoV-19/USA/NY-NYUMC57/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_421302
 2020-03-17 2020-04-07
 United States hCoV-19/USA/WI-UW-44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A C18171A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421348 MT370861
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T G1820A C3037T C10851T C14408T A23403G G25563T CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_421349 MT370906
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C25688A GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_421350 MT370843
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C14408T A23403G G25563T C25688A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421357 MT370866
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G11083T C14805T C18086T A21137G G26144T G28842T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_421358 MT370903
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G11083T C14805T C18086T G26144T G28842T AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_421363 MT370913
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T T3144C C14408T C16260T A23403G G25563T C28821A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421364 MT370849
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T C17747T A17858G C18060T T28144C C28708T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421367 MT370905
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_421371 MT370859
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T A7770G C14408T A20755C A22455G A23403G G25563T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_421379 MT370907
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_421394 MT370916
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T C14408T A23403G G25563T C28849T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_421395 MT370901
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421397 MT370871
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G199T C241T C1059T C3037T A7291G C11916T C12153T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421398 MT370914
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_421399 MT370876
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C29274T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421400 MT370902
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C10851T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421401 MT370886
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421403 MT370865
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421404 MT370899
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421405 MT370838
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C4456T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421417 MT370877
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421422 MT370868
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421425 MT370909
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- G11083T C14805T T17247C G26144T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421426 MT370841
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421427 MT370872
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421429 MT370911
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421430 MT370853
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421432 MT370894
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C10277T C14408T A23403G G25563T C26625T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421433 MT370888
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G11083T C14805T T17247C G26144T G29543C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421434 MT370850
 2020-03-17 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C28472T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421464
 2020-03-17 2020-04-08
 Portugal hCoV-19/Portugal/PT0061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421686
 2020-03-17 2020-04-09
 United States hCoV-19/USA/MN130-MDH130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A19736M A23403G C23533T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421692
 2020-03-17 2020-04-09
 United States hCoV-19/USA/MN136-MDH136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10360A T13171C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421719
 2020-03-17 2020-04-09
 United States hCoV-19/USA/NY-NYUMC107/2020
 C241T C1059T C3037T C14408T C20719T A23403G G25563T G26995A

EPI_ISL_421721
 2020-03-17 2020-04-09
 United States hCoV-19/USA/NY-NYUMC109/2020
 C241T C1059T C3037T C14408T C18457T A23403G G25563T

EPI_ISL_421734
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS7970956/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_421735
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS3307371/2020
 A2805G C8782T T9477A C14805T T20327C G25979T T28144C C28657T C28863T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_421737
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS2334563/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_421738
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS3404815/2020
 C241T C3037T C14408T C15324T A20472G C20629T A23403G G29747C AAAAAAAAAAA29893-

EPI_ISL_421740
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS1644489/2020
 C241T C1059T C3037T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_421741
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS6689955/2020
 C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_421742
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS6500589/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_421743
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS0272441/2020
 C241T C3037T C14408T G18149T A23403G C27532T AAAAAAAAAAAAA29891-

EPI_ISL_421744
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS7074589/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_421745
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS2299410/2020
 C241T C3037T C3688T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_421746
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS0819394/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAA29897-

EPI_ISL_421747
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS3770609/2020
 A187G C241T C3037T C13665T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_421748
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS3052946/2020
 C241T C1059T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_421750
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS3035957/2020
 C241T G1914A C3037T G11858A C14408T C15324T A23403G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_421752
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS4569788/2020
 C241T C3037T C14408T C15324T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_421753
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS7991123/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_421754
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS0814536/2020
 C241T C3037T C14408T A20268G A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_421755
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS6897699/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_421757
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS7914820/2020
 A187G C241T C3037T C14408T T22501C A23403G C29535T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_421759
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS4235576/2020
 C241T A2982G C3037T C14408T G18756T A23403G AAAAA29899-

EPI_ISL_421760
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS2458673/2020
 A187G C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_421761
 2020-03-17 2020-04-09
 Luxembourg hCoV-19/Luxembourg/LNS8602041/2020
 C21T C241T C1059T C3037T G11464A C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_422415
 2020-03-17 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU13/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422668 LR878194
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G27505A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422670 LR878209
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T T2698C C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422671 LR878212
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G A27038T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422672 LR877730
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422673 LR878072
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422674 LR877724
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422855 LR878180
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G G28628T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422858 LR878170
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T T18630C A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422888 LR877937
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C A535G ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422889 LR877933
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422907 LR878214
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T16515C A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422908 LR878211
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T16515C A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422909 LR878213
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6120T C14408T G20275A A23403G G23610C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422910 LR877721
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422911 LR877722
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422912 LR877727
 2020-03-17 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A C22214G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422969 MT293164
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_422969 MT293164
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_422970 MT293165
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422970 MT293165
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422971 MT293166
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW401/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA A6693G C8782T C17747T A17858G C18060T C25339T T28144C AAAAAAA29897-

EPI_ISL_422971 MT293166
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW401/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA A6693G C8782T C17747T A17858G C18060T C25339T T28144C AAAAAAA29897-

EPI_ISL_422972 MT293167
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_422972 MT293167
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_422973 MT293168
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCG1- C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_422973 MT293168
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCG1- C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_422974 MT293169
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C8782T C17326T C17747T A17858G A17884G C18060T G19645T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_422974 MT293169
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C8782T C17326T C17747T A17858G A17884G C18060T G19645T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_422976 MT293171
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAA29896-

EPI_ISL_422976 MT293171
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAA29896-

EPI_ISL_422977 MT293172
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34WTTA C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AA29902-

EPI_ISL_422977 MT293172
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34WTTA C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AA29902-

EPI_ISL_422981 MT293176
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USACT-UW411/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAAAAAAAAAA

EPI_ISL_422981 MT293176
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USACT-UW411/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAAAAAAAAAA

EPI_ISL_422983
 2020-03-17 2020-04-12
 United States hCoV-19/USA/UN-UW-1407/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T T27895C C28289A T28340A G29553A AAAA29900-

EPI_ISL_422984 MT293179
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C8782T C17747T A17858G C18060T G22984A T27384C T28144C T29867H -29904AAAAAAAAAAAAA

EPI_ISL_422984 MT293179
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C8782T C17747T A17858G C18060T G22984A T27384C T28144C T29867H -29904AAAAAAAAAAAAA

EPI_ISL_422991 MT293186
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW421/2020
 ATTAAAGGTTTATACCTTCCC1- C8782T A9634T C17747T A17858G C18060T CACAATTGG25416- T28144C AAAAAAAA29896-

EPI_ISL_422991 MT293186
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW421/2020
 ATTAAAGGTTTATACCTTCCC1- C8782T A9634T C17747T A17858G C18060T CACAATTGG25416- T28144C AAAAAAAA29896-

EPI_ISL_422992 MT293187
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- AC35WT C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_422992 MT293187
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- AC35WT C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_422995 MT293190
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C4795T C5730T C8782T C17747T A17858G C18060T T27384C T28144C A29903-

EPI_ISL_422995 MT293190
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C4795T C5730T C8782T C17747T A17858G C18060T T27384C T28144C A29903-

EPI_ISL_422996 MT293191
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_422996 MT293191
 2020-03-17 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_422997
 2020-03-17 2020-04-12
 United States hCoV-19/USA/WA-UW-1351/2020
 ATTAAAGGT1- TACCTTCCCAGGTAACAAACCAACC13- C8782T C17747T A17858G C18060T T28144C C29733T A29903-

EPI_ISL_423857
 2020-03-17 2020-04-12
 United Kingdom hCoV-19/England/20124036306/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_424176 MT326184
 2020-03-17 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTC1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C28697T

EPI_ISL_424178 MT326185
 2020-03-17 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1342/2020
 AT1- AGGT6- CCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGG15- C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A -29904AAAANANAAAAAAA

EPI_ISL_424364
 2020-03-17 2020-04-13
 India hCoV-19/India/3118/2020
 ATTAAAGGTTTAT1- C241T C3037T G4255T C14408T A20355G A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424365
 2020-03-17 2020-04-13
 India hCoV-19/India/3239/2020
 ATTAAAGGTTTA1- C241T C3037T G4255T C14408T A20355G A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_424671 MT339041
 2020-03-17 2020-04-13
 United States SARS-CoV-2/human/USA/AZ-ASU2936/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424969
 2020-03-17 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-13/2020
 ATT1- C241T C3037T C6026T C14408T G22051T A23403G GGG28881AAC AA29902-

EPI_ISL_424970
 2020-03-17 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-14/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424971
 2020-03-17 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-15/2020
 C241T C3037T C14408T A20268G A23403G G29473A G29734C

EPI_ISL_424973
 2020-03-17 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-17/2020
 ATTA1- C241T C1059T C3037T T3178G C14408T G21225T A23403G G25563T

EPI_ISL_425123 MT582461
 2020-03-17 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-39/2020
 A3675R C8109Y C8782T C17470T T22447C C26088T T28144C

EPI_ISL_425124 MT582460
 2020-03-17 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-40/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_425217
 2020-03-17 2020-04-14
 Spain hCoV-19/Spain/Valencia93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425218
 2020-03-17 2020-04-14
 Spain hCoV-19/Spain/Valencia94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C398T C8782T A19403G C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425219
 2020-03-17 2020-04-14
 Spain hCoV-19/Spain/Valencia95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6638T C8782T T9477A C14805T G25979T T28118C T28144C G28287T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425220
 2020-03-17 2020-04-14
 Spain hCoV-19/Spain/Valencia96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3406T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425221
 2020-03-17 2020-04-14
 Spain hCoV-19/Spain/Valencia97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1882T C3037T C8208T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425359
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74C30/2020
 C241T C3037T C3096T C14408T A23403G GGG28881AAC

EPI_ISL_425362
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74C8B/2020
 C241T A2480G C2558T C14805T C25000T G26144T

EPI_ISL_425484
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E010/2020
 C241T C3037T C14408T C18264T A23403G

EPI_ISL_425486
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E03E/2020
 G431A ATG1605- C20270T A29683T

EPI_ISL_425487
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E04D/2020
 C241T C3037T C14408T T15351G G21518T A23403G

EPI_ISL_425502
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E14A/2020
 G11083T C14805T C23707T G26144T

EPI_ISL_425644
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EB6A/2020
 C241T C3037T C14408T T15351G G21518T A23403G

EPI_ISL_425703
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425711
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A7479G G11083T C14805T T17247C C25572T G26144T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425713
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425715
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A6616G C7423T G15708C G21641T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425717
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13835T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425721
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C9857T C16362T C16596T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425731
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T C6040T G11083T C14805T G21786T G25471C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425851
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB047/2020
 C988T G11083T C14805T T17247C C19484T G26144T C29585T

EPI_ISL_425852
 2020-03-17 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB048/2020
 C988T G11083T C14805T T17247C C19484T G26144T

EPI_ISL_426359
 2020-03-17 2020-04-16
 Czech Republic hCoV-19/Czech Republic/Seq6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426500
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268099/2020
 C241T C1059T C3037T C14408T C22802G A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_426501
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268183/2020
 C241T C1059T C3037T C8293T C14408T A23403G G25563T C27964T A29006G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426502
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268188/2020
 C6027T A10236G G11083T C14805T T17247C C17750T C24130T G25563T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426503
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268281/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426504
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268282/2020
 T490A A2565G C3177T C8782T C15960T T18736C G19684T C22986T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426505
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268289/2020
 C241T C1059T C3037T C3267T C8293T C14408T A23403G G25563T C27964T A29006G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426506
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268350/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC C29614T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426510
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG268657/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426527
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG269848/2020
 C241T C3037T C14408T A23403G A25905T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426530
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG269875/2020
 C241T C379A C1059T C3037T C14408T C18576T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426535
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG271578/2020
 C241T C1059T C3037T C3267T C8293T C14408T A23403G G25563T C27964T A29006G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426537
 2020-03-17 2020-04-17
 United States hCoV-19/USA/AZ-TG271854/2020
 T3171A C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426583
 2020-03-17 2020-04-17
 Uruguay hCoV-19/Uruguay/UY-8/2020
 C8782T A11782G C17747T A17858G C18060T A24694T T28144C

EPI_ISL_426630
 2020-03-17 2020-04-17
 Taiwan hCoV-19/Taiwan/TSGH-02/2020
 C228T G1397A G9479T A9514G G11083T A19818G G26720C G28202T T28688C T28835C G29742T -29904TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAACAAAAACAAAAAAAAAAAAAAATATCAAAAA

EPI_ISL_426631
 2020-03-17 2020-04-17
 Taiwan hCoV-19/Taiwan/TSGH-03/2020
 A1G C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_426632
 2020-03-17 2020-04-17
 Taiwan hCoV-19/Taiwan/TSGH-04/2020
 C241T C1059T C3037T T7217C C14408T C18568T A23403G G25563T

EPI_ISL_426637 MT451219
 2020-03-17 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC327/2020
 A1- C2558T G11083T C14805T G26144T

EPI_ISL_426638 MT451220
 2020-03-17 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC328/2020
 ATTAAAGG1- C2558T G11083T C14805T G26144T

EPI_ISL_426639 MT451221
 2020-03-17 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC329/2020
 ATTA1- C241T C3037T G5384T C14408T G22899T A23403G

EPI_ISL_427350
 2020-03-17 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10099/2020
 C241T C3037T C14408T C15277T C15324T A23403G

EPI_ISL_427359
 2020-03-17 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10108/2020
 C241T C2773T C3037T C14408T C18348T A23403G A28081G

EPI_ISL_428230
 2020-03-17 2020-04-20
 Taiwan hCoV-19/Taiwan/TSGH-13/2020
 A79C C228T G1397A G9479T A9514G G11083T A19818G T24450A G26720C G28202T T28688C T28835C G29742T -29898AAAAC

EPI_ISL_428261
 2020-03-17 2020-04-20
 United States hCoV-19/USA/WI-UW-165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428262
 2020-03-17 2020-04-20
 United States hCoV-19/USA/WI-UW-166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428826
 2020-03-17 2020-04-22
 Singapore hCoV-19/Singapore/47/2020
 ATTA1- C6312A A10115R G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_428855
 2020-03-17 2020-04-22
 Gambia hCoV-19/Gambia/GC19-015/2020
 C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_429169
 2020-03-17 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C11355T C14408T A23403G GGG28881AAC AAAA29900-

EPI_ISL_429170
 2020-03-17 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0034/2020
 ATTA1- A895G C2942T G4390T C8782T C9598T G20134T T20827Y G24047A T28144C

EPI_ISL_429208
 2020-03-17 2020-04-23
 Switzerland hCoV-19/Switzerland/GE2164/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_429226
 2020-03-17 2020-04-23
 Italy hCoV-19/Italy/TE5551/2020
 A187G C241T AC538WM C3037T C14408T A23403G AAAA29900-

EPI_ISL_429227
 2020-03-17 2020-04-23
 Italy hCoV-19/Italy/TE5553/2020
 C241T C3037T T7396W C14408T C20016T A23403G GGG28881AAC AAAA29900-

EPI_ISL_429304
 2020-03-17 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH56/2020
 C241T C1059T C1302T C3037T C9979T C14408T A23403G G25563T G29779T

EPI_ISL_429305
 2020-03-17 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH57/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429306
 2020-03-17 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH60/2020
 C241T C1059T C3037T G10465A C14408T C21742T A23403G G25563T G28899T

EPI_ISL_429307
 2020-03-17 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH61/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429308
 2020-03-17 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH62/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_429310
 2020-03-17 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH64/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A GAT27382CTC

EPI_ISL_429311
 2020-03-17 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH65/2020
 C241T C1059T C3037T T8788C C14408T T22917G A23403G G25563T G26951A

EPI_ISL_429687
 2020-03-17 2020-04-24
 Brazil hCoV-19/Brazil/CV31/2020
 ATTAAA1- C241T C3037T T9145A C14408T C15346A A20268G A23403G G23755T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_429688
 2020-03-17 2020-04-24
 Brazil hCoV-19/Brazil/CV32/2020
 ATTAA1- C241T C3037T T9145A C14408T A23403G G25793T GGG28881AAC T29148C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_429867
 2020-03-17 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-4505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_429868
 2020-03-17 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-4598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T C10702T C11074T G11083T T28688C G29742T

EPI_ISL_429869
 2020-03-17 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-4701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_429994 MT811546
 2020-03-17 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0034-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_429999 MT811551
 2020-03-17 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0041-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430001 MT811553
 2020-03-17 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0043-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C313T C1178T C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430004 MT811556
 2020-03-17 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0046-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G11365T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430014 MT811564
 2020-03-17 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0056-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G11083T C14805T G26144T G28842T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430132 MT627620
 2020-03-17 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S278/2020
 T490A C3177T C6040T C8782T G12478A T14514C T18736C C19895T C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_430199 MT632559
 2020-03-17 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S161/2020
 C8782T C17747T A17858G C18060T T23010C G25471T T28144C

EPI_ISL_430208 MT632589
 2020-03-17 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S170/2020
 G1401A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430841
 2020-03-17 2020-04-28
 Thailand hCoV-19/Thailand/NIH-2492/2020
 A1GGAGGRARGGVGAGGGTHGGAAAACHAACCTA -4GGGTACTATGCTCAGTACCTGGGTGACGG AGG6TCA T11C -17CCAAACCTCAGCAYYACACARTM A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_431013
 2020-03-17 2020-04-29
 United States hCoV-19/USA/AK-PHL010/2020
 ATTAAAGGTTTATACC1- C241T C3037T C6504T C14408T A19403W C21530Y T21585Y A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_431014
 2020-03-17 2020-04-29
 United States hCoV-19/USA/AK-PHL011/2020
 ATTAAAGGTTT1- T2266C C6027T A10236G G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_431780
 2020-03-17 2020-04-29
 China hCoV-19/Fujian/IM3520010T/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T -5121A C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_434536
 2020-03-17 2020-04-29
 Costa Rica hCoV-19/Costa Rica/0003/2020
 ATTAAAGGTTTATACCTTCCCAG1- C8782T GATATGGTT11267- A12792T G12794T A12796T G12798A C17747T A17858G C18060T T22355A A24694T T28144C T29856G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAA29858- A29900T A29903G

EPI_ISL_434649
 2020-03-17 2020-04-30
 Sweden hCoV-19/Sweden/20-05856/2020
 C241T C3037T C14408T A23403G

EPI_ISL_434690
 2020-03-17 2020-05-01
 United States hCoV-19/USA/MD-HP00015/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434704
 2020-03-17 2020-05-01
 Thailand hCoV-19/Thailand/NIH-2492-2/2020
 A1TTA -4GGGTACTATGCTCAGTACCTGGGTGACGG AGG6TCA T11C -16CCCAAACCTCAGCAYYACACAAT A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_434729
 2020-03-17 2020-05-01
 United States hCoV-19/USA/TX-HMH019/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434731
 2020-03-17 2020-05-01
 United States hCoV-19/USA/TX-HMH021/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434732
 2020-03-17 2020-05-01
 United States hCoV-19/USA/TX-HMH022/2020
 T490A C3177T C6040T C6843T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434764
 2020-03-17 2020-05-01
 United States hCoV-19/USA/TX-HMH055/2020
 C241T C313T C3037T C14408T G18826T A23403G GGG28881AAC

EPI_ISL_435103
 2020-03-17 2020-05-02
 India hCoV-19/India/NCDC-01604/2020
 C884T G1397A T8022K T8598Y G8653T C9039M G11083T T16993C T18690K T22515Y T25461C A27191R G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435104
 2020-03-17 2020-05-02
 India hCoV-19/India/NCDC-01614/2020
 C884T G1397A C5730T T8022K A8026W G8653T G11083T T16993C AG24389MS T25461C A27646C T28688C G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435105
 2020-03-17 2020-05-02
 India hCoV-19/India/NCDC-01616/2020
 C884T G1397A T8022K G8653T G11083T T16993C G19861A A23116W T25461C T28688Y G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435109
 2020-03-17 2020-05-02
 India hCoV-19/India/NCDC-01638/2020
 T456Y A1518R A1520R A2480G C2558T C6395T T8022G A8026T G9471C T9475W G11083T C14805T A15035R A18390R AG24389MS G26144T ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_435281
 2020-03-17 2020-05-04
 Indonesia hCoV-19/Indonesia/JKT-EIJK0141/2020
 ATTAAAGGTTTA1- C6573T C12823T G29734T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

EPI_ISL_435316
 2020-03-17 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_0985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A2480G C2558T G10054A G11083T C14805T G25311T G26144T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_436057 MT434790
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0183NYC/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436058 MT434791
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0186NYC/2020
 C241T C1059T C1917T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436059 MT434792
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0240NYC/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436064 MT434785
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0397NYC/2020
 G11083T T17247C G24095T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436065 MT434797
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0407NYC/2020
 C241T C1059T C14408T C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436071 MT434803
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0513NYC/2020
 C241T C1059T G11291A C11916T C14408T C18998T A23403G G25563T C27011T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436073 MT434804
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0710NYC/2020
 C241T C1059T C14408T C16726T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436081 MT434811
 2020-03-17 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0996NYC/2020
 C241T C1059T C14408T T18632G A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436283
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T T17126C A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436377
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C398T C8782T C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436383
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_436384
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3511T C14408T G17427T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436386
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G701T C3037T C10650T C14408T C18788T A20268G A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_436388
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G5572A C14408T C19488T A23403G C23613T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436389
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- T514C ATG1605- C10456T G17014T C17410T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436390
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T17126C A20268G G21520A A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436391
 2020-03-17 2020-05-06
 Spain hCoV-19/Spain/Valencia296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_436889 MT439253
 2020-03-17 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437253
 2020-03-17 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0054/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437254
 2020-03-17 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0055/2020
 A2480G C2558T G11083T A11090T C14805T G17338T C20429T G26144T

EPI_ISL_437885 MT459885
 2020-03-17 2020-05-11
 Greece SARS-CoV-2/human/GRC/217_34885/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A4282G C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437886 MT459886
 2020-03-17 2020-05-11
 Greece SARS-CoV-2/human/GRC/218_35009/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T T21357G A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437889 MT459891
 2020-03-17 2020-05-11
 Greece SARS-CoV-2/human/GRC/223_34904/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C19862T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437943
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0074/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437944
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0076/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T G28851T G29315T AAAAAAA29897-

EPI_ISL_437945
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0077/2020
 C241T C1059T C3037T C12923Y C14408T A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_437970
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0112/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438056
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0222/2020
 C241T C3037T C14408T T22521K A23403G A24862G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438057
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0223/2020
 C241T A1140C C3037T C14408T A19652G A20268G T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438058
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0224/2020
 C241T A1140C C3037T C5621Y C14408T C14757T A19652G A20268G T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438059
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0225/2020
 C241T G2180K C3037T G12832A C14408T T22521K A23403G C26110Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438060
 2020-03-17 2020-05-12
 Austria hCoV-19/Austria/CeMM0226/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438222
 2020-03-17 2020-05-12
 United States hCoV-19/USA/MD-HP00025/2020
 C241T C1059T C1917T C3037T C8697T C14408T A23403G G25563T C27434T

EPI_ISL_438229
 2020-03-17 2020-05-12
 United States hCoV-19/USA/DC-HP00070/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25726T

EPI_ISL_438231
 2020-03-17 2020-05-12
 United States hCoV-19/USA/DC-HP00073/2020
 C241T C1059T A1817G C3037T C14408T A23403G G25563T C26768T

EPI_ISL_441420
 2020-03-17 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB40C/2020
 ATTA1- A2480G C2558T A6569G G11083T C14805T G26144T C29870A

EPI_ISL_441423
 2020-03-17 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB439/2020
 ATTAAAGGTTTATAC1- ATG1605- C6696T C11001T T22729C C25844T C29870A

EPI_ISL_441426
 2020-03-17 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB466/2020
 AT1- ATG1605- A2404T C6696T C11001T C29870A

EPI_ISL_441431
 2020-03-17 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB4B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G1440A G2891A C4763T G17808A A27669G C29870A

EPI_ISL_441432
 2020-03-17 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB4C0/2020
 ATTAAAGGTTTA1- ATG1605- C6696T A10785G C11001T C18326T G23311T C23525T C29870A

EPI_ISL_441435
 2020-03-17 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB4FD/2020
 ATTAAAGGTTTATACCTT1- ATG1605- C6696T C11001T G27364C C29870A

EPI_ISL_441436
 2020-03-17 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB509/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_443230
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/138/2020
 C241T C1059T C3037T C4421Y C14408T C14786T C18166T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_443231
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/139/2020
 A3481R A8621W C8782T T25394C C26088T T28144C AAAAAAAAAAAA29892-

EPI_ISL_443232
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/140/2020
 C6312A A8413R G11083T C13730T C17639T C18115Y C23929T C28311T A29720G AAAAAAAAAAAA29892-

EPI_ISL_443233
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/141/2020
 G1440A G2891R T23542Y AAAAAAAAAAAA29892-

EPI_ISL_443234
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/142/2020
 C241T C3037T C14408T T19839C A23403G C28289T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443235
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/143/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_443236
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/144/2020
 C241T C1059T C3037T C4551T C14408T T18351C A23403G G25563T C26885Y G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_443237
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/145/2020
 C66T C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443238
 2020-03-17 2020-05-12
 Singapore hCoV-19/Singapore/146/2020
 C241T C2005Y C3037T C14408T A20268G A23403G C26456Y A29257R G29734C AAAAAAAAAAAA29892-

EPI_ISL_443300
 2020-03-17 2020-05-12
 France hCoV-19/France/IDF3081/2020
 C241T C1059T C3037T G11083T C14408T C21575T A23403G G25563T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_444568
 2020-03-17 2020-05-14
 United States hCoV-19/USA/IL-NM073/2020
 C8782T G16381A T17877C G25500T T28144C G28878A G29742A

EPI_ISL_444773
 2020-03-17 2020-05-14
 United States hCoV-19/USA/NY-NYUMC656/2020
 C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_444774
 2020-03-17 2020-05-14
 United States hCoV-19/USA/NY-NYUMC657/2020
 C241T C1059T C3037T C14408T C21642T A23403G G25563T

EPI_ISL_444775
 2020-03-17 2020-05-14
 United States hCoV-19/USA/NY-NYUMC658/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444786
 2020-03-17 2020-05-14
 United States hCoV-19/USA/NY-NYUMC669/2020
 C8078T G11083T C12488T C14805T T17247C G26144T T28251G CA28253TC

EPI_ISL_444788
 2020-03-17 2020-05-14
 United States hCoV-19/USA/NY-NYUMC671/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28077T

EPI_ISL_445094
 2020-03-17 2020-05-15
 United States hCoV-19/USA/CA-SR0094/2020
 C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_445222
 2020-03-17 2020-05-15
 Sweden hCoV-19/Sweden/20-05823/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_445280
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_3/2020
 ATTAAA1- C241T C3037T C14408T A23403G C25350T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_445281
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Concepcion_1/2020
 ATTAAAGGTTTAT1- C16T C241T C3037T G10265A A12506R C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_445311
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_32/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G A25592R ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445312
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_33/2020
 ATTAAAGGTTTAT1- C241T C3037T A12506R C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_445313
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_34/2020
 ATTAA1GGACT C241T C3037T A12506R C14408T A20268G C21058T A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445314
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_35/2020
 ATTAA1-CAGT C241T C3037T G5230T C14408T A20268G A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445316
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G1319A C3037T C8389T C13584T C14408T A23403G G25563T CA29838TG G29841C GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843C

EPI_ISL_445317
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445319
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_40/2020
 AT1CC A4G C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445320
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_41/2020
 T2A A4T C241T C3037T C14408T A20268G A23403G CA29838TG GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_445321
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_42/2020
 AT1GGTTTATGATCCTTTGCAACCTGAA A4T C241T C657Y C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_445362
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_66/2020
 -2ACAACACAGTTTATGATCCTTTGCAACCTGAA A5GACTCATTCAAGGAGGAGTTAGATAAATATTT C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445364
 2020-03-17 2020-05-15
 Chile hCoV-19/Chile/Santiago_68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447130
 2020-03-17 2020-05-16
 Belgium hCoV-19/Belgium/ULG-0190/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_447177 MT506643
 2020-03-17 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20206/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447196 MT506652
 2020-03-17 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20226/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27151R CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_447228 MT506650
 2020-03-17 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20258/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_447255
 2020-03-17 2020-05-17
 Taiwan hCoV-19/Taiwan/TSGH-29/2020
 C3037T T7060G A7064G G11453T A11768T A17542C T17574G T26545G

EPI_ISL_447328
 2020-03-17 2020-05-17
 Israel hCoV-19/Israel/51140028/2020
 G1440A G2891A AAAAAAAAAAAA29892-

EPI_ISL_447408
 2020-03-17 2020-05-17
 Israel hCoV-19/Israel/2023920/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447409
 2020-03-17 2020-05-17
 Israel hCoV-19/Israel/2020087/2020
 C241T C1101T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_448816
 2020-03-17 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF179/2020
 C241T C3037T T3100G G10097A C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_448818
 2020-03-17 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF197/2020
 G11083T C14267T C14805T T17247C G26144T

EPI_ISL_448825
 2020-03-17 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF346/2020
 C241T C3037T T3100G G10097A C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_450051
 2020-03-17 2020-05-19
 United States hCoV-19/USA/NY-PV09364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C6927T C14408T A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_450052
 2020-03-17 2020-05-19
 United States hCoV-19/USA/NY-PV09367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450053
 2020-03-17 2020-05-19
 United States hCoV-19/USA/NY-PV09368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G A23901T G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450054
 2020-03-17 2020-05-19
 United States hCoV-19/USA/NY-PV09369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450325
 2020-03-17 2020-05-20
 India hCoV-19/India/CCMB_NIV5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A187G C241T C3037T G11083T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450469 MT499195
 2020-03-17 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1220/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450474 MT499200
 2020-03-17 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1225/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450477 MT499203
 2020-03-17 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1228/2020
 C2676T C8782T A22606T T28144C G28878A G29742A

EPI_ISL_450478 MT499204
 2020-03-17 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1229/2020
 C241T C1059T C3037T C14408T C17104T A23403G G25563T

EPI_ISL_450479 MT499205
 2020-03-17 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1230/2020
 C241T C1059T C3037T C6258T C14408T A23403G G25563T C29253T

EPI_ISL_450480 MT499206
 2020-03-17 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1231/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_450610
 2020-03-17 2020-05-21
 United States hCoV-19/USA/MI-MDHHS-SC20331/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T C27960T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_450799 MT507276
 2020-03-17 2020-05-22
 Jamaica SARS-CoV-2/human/JAM/JM-CDC-7286/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27213T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450873
 2020-03-17 2020-05-22
 Brazil hCoV-19/Brazil/AP161167-IEC/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_451132
 2020-03-17 2020-05-23
 Australia hCoV-19/Australia/SAP115/2020
 ATTAA1- A1079C G1397A T7225C C9319T G11083T C19862T C22120T T27384C T28688C G29742T

EPI_ISL_452119 MT512447
 2020-03-17 2020-05-26
 United States SARS-CoV-2/human/USA/VI-CDC-3588/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452298
 2020-03-17 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20424/2020
 A1515G C9223T G11083T C12132T C14805T T17247C T23335A G26144T T28306Y C28732Y

EPI_ISL_452319
 2020-03-17 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20445/2020
 C241T C1059T C3037T C14408T A23403G G25563T T28426Y

EPI_ISL_452321
 2020-03-17 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20447/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAA29890-

EPI_ISL_452324
 2020-03-17 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20450/2020
 C241T C1059T C3037T G3443R C14408T A23403G G25563T

EPI_ISL_452508
 2020-03-17 2020-05-27
 Spain hCoV-19/Spain/COV001393/2020
 G1820R C8782T C10335T G11083T C21846T C26088T C27600Y T28144C

EPI_ISL_453825
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C3140T C14408T A23403G G24077T C27769T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454051
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C10543T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454055
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454059
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G16558T A23403G C23603T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454064
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454127
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4201T C14408T A23403G G26172A C26527T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454226
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T C18646T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454227
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G20953A A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454228
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454338
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T28678C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454339
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T28678C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454340
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2704T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454341
 2020-03-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G246T C3037T C14408T A23403G G24098T C25714T G27703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454954
 2020-03-17 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-204/2020
 

EPI_ISL_454972
 2020-03-17 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-227/2020
 A18625G C24034T G28077C T28144C

EPI_ISL_454977
 2020-03-17 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-236/2020
 G26144T

EPI_ISL_455283
 2020-03-17 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T T12247C G12550A C14408T A20268G C20740A A23403G C29548A G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455388
 2020-03-17 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-202/2020
 C379A C26447G T28144C T28250G A28254-

EPI_ISL_455392
 2020-03-17 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-230/2020
 A8621T T14633C TG14865- TGGATT25394- T28144C T28250G A28254- G29742T A29776T

EPI_ISL_455451
 2020-03-17 2020-05-29
 Poland hCoV-19/Poland/PL_P38/2020
 C241T C3037T G9658T C14408T A20268G A23403G G29734C

EPI_ISL_455586
 2020-03-17 2020-06-01
 Thailand hCoV-19/Thailand/Bangkok_2972/2020
 C629T T3931C G11083T C14805T G26144T G28857T AAAAAAAAAAAA29892-

EPI_ISL_455716
 2020-03-17 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_979/2020
 C241T TGGTCATGTTATGGT508- C1059T T1666C C3037T C14408T A23403G G25563T

EPI_ISL_455717
 2020-03-17 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1072/2020
 G174A C241T TGGTCATGTTATGGT508- C1059T T1666C C3037T C14408T A23403G G25563T

EPI_ISL_456161
 2020-03-17 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0514/2020
 C241T C1059T C3037T C14408T A23403G

EPI_ISL_456172
 2020-03-17 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0987/2020
 T490A C3177T C8782T T18736C C19386T G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_456174
 2020-03-17 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0989/2020
 T490A C3177T C8782T G19684T C24034T A29700G

EPI_ISL_456175
 2020-03-17 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0990/2020
 C6026T C6336T A10985G

EPI_ISL_456177
 2020-03-17 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0994/2020
 G1505A G11083T G13627T C14805T C15540T G26144T A28338G

EPI_ISL_456178
 2020-03-17 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0995/2020
 T514C C22591T

EPI_ISL_457140
 2020-03-17 2020-06-02
 United Kingdom hCoV-19/England/EXET-135B97/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_457752 MT646096
 2020-03-17 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00029/2020
 C241T C2416T C3037T C9891Y C14408T A23403G G25563T G26233T

EPI_ISL_457791 MT646064
 2020-03-17 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00045/2020
 C241T C1059T C2110T C3037T C14408T A23403G G25563T

EPI_ISL_457939
 2020-03-17 2020-06-02
 Oman hCoV-19/Oman/RESP-20-2181/2020
 G1397A T28688C G29742T

EPI_ISL_457975
 2020-03-17 2020-06-02
 Oman hCoV-19/Oman/RESP-20-2523/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_457976
 2020-03-17 2020-06-02
 Oman hCoV-19/Oman/RESP-20-2631/2020
 C8782T C9223T G11230T T28144C G28878A G29742A

EPI_ISL_458000 MT549878
 2020-03-17 2020-06-01
 Kenya SARS-CoV-2/human/KEN/D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C1191T A2480G C2558T G11083T C14805T G26144T T26665C TACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29748C

EPI_ISL_459858
 2020-03-17 2020-06-04
 Chile hCoV-19/Chile/LaFlorida-26639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459862
 2020-03-17 2020-06-04
 Chile hCoV-19/Chile/Santiago-25669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460063
 2020-03-17 2020-06-05
 United States hCoV-19/USA/MN-MDH-74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T G28985T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_460065
 2020-03-17 2020-06-05
 United States hCoV-19/USA/MN-MDH-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_460666
 2020-03-17 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T G20433T A23403G G25563T C25688T G29751T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460720
 2020-03-17 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460818
 2020-03-17 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T C15714T T17979C A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462178
 2020-03-17 2020-06-08
 Belgium hCoV-19/Belgium/HN-0317324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462179
 2020-03-17 2020-06-08
 Belgium hCoV-19/Belgium/WVM-0317325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462180
 2020-03-17 2020-06-08
 Belgium hCoV-19/Belgium/JBE-0317326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C4999T C7765T C14408T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462181
 2020-03-17 2020-06-08
 Belgium hCoV-19/Belgium/HMM-0317327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C15738T C16393T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462292
 2020-03-17 2020-06-08
 Singapore hCoV-19/Singapore/174/2020
 C8782T T25394C C26088T T28144C AAAAAAAAAAAA29892-

EPI_ISL_462401
 2020-03-17 2020-06-08
 Singapore hCoV-19/Singapore/283/2020
 C21260Y T23487G G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_462409
 2020-03-17 2020-06-08
 Singapore hCoV-19/Singapore/291/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_462429
 2020-03-17 2020-06-08
 Singapore hCoV-19/Singapore/311/2020
 C241T C3037T C3373A C11195T C14408T C15216T T20114K A23403G GGG28881AAC G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_462432
 2020-03-17 2020-06-08
 Singapore hCoV-19/Singapore/314/2020
 C241T C3037T C14408T A23403G C26461Y GGG28881AAC G29266K AAAAAAAAAAAA29892-

EPI_ISL_462450
 2020-03-17 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7340/2020
 ATTAAAGGTTTATAC1- G11083T C14805T T17247C T25733C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463984
 2020-03-17 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T G4201T C14408T C22564Y A23403G C26527T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_463989
 2020-03-17 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S51/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_464092 MT590598
 2020-03-17 2020-06-11
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3177T C7609T C21772T AAAAAAAAAA29894-

EPI_ISL_464112
 2020-03-17 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5209G C14408T A23403G A24862G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_464116
 2020-03-17 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_05/2020
 C241T C14408T C15952T A23403G A24862G

EPI_ISL_465788
 2020-03-17 2020-06-11
 United Kingdom hCoV-19/England/20124029204/2020
 C241T C3037T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_467092
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001464/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467095
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001434/2020
 C8782T T9477A C12970T C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467101
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001467/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467106
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001522/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467108
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001438/2020
 C8782T T9477A C14805T C21614T G25979T C26198T T28144C C28657T C28863T

EPI_ISL_467115
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001443/2020
 G558K C1997T C8782T T9477A C14805T G25979T C26256A T28144C C28657T C28863T

EPI_ISL_467117
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001468/2020
 G1148T C8782T T9477A T12175G C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467122
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001512/2020
 C8782T T9477A C14805T G17392A G25979T T28144C C28657T C28863T

EPI_ISL_467123
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001523/2020
 C241T C1059T C3037T T13006C C14408T G17302T G22131A A23403G G25563T C25688T C25693T C29870A

EPI_ISL_467127
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001465/2020
 C8782T T9477A C14805T G25979T G28109T T28144C C28657T C28863T C29870A

EPI_ISL_467130
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001436/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467145
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001455/2020
 C241T C3037T C6354T C14408T C19186T A20268G C21219T A23403G G29734C

EPI_ISL_467148
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001445/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_467154
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001452/2020
 G5743T C8782T T9477A C14805T C20544Y G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467155
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001470/2020
 C8782T T9477A C14805T A23586G G25979T T28144C C28657T T28705C C28863T

EPI_ISL_467166
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001484/2020
 C8782T T9477A C12970T C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467167
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001525/2020
 C241T C3037T C14408T A20268G A23403G G25951A C28854T

EPI_ISL_467170
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001505/2020
 C8782T T9477A C14805T A23586G G25979T T28144C C28657T T28705C C28863T C29870A

EPI_ISL_467173
 2020-03-17 2020-06-12
 Spain hCoV-19/Spain/COV001437/2020
 C7528Y C8782T T9477A C14805T C16466Y C22227T G25979T T28144C C28657T C28863T

EPI_ISL_467420
 2020-03-17 2020-06-13
 United States hCoV-19/USA/NY-NYUMC927/2020
 C241T A263G C1191T C3037T C14408T A23403G

EPI_ISL_467611
 2020-03-17 2020-06-14
 United States hCoV-19/USA/NM-UNM-00030/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468392 MT628128
 2020-03-17 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1418/2020
 AT1- C241T C379A C1059T C3037T C14408T A23403G G25012A G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468393 MT628129
 2020-03-17 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C379A C1059T C3037T C14408T A23403G G25012A G25563T C29769Y

EPI_ISL_468737
 2020-03-17 2020-06-17
 Belgium hCoV-19/Belgium/UGent-89/2020
 C11074T G11083T C13119T C14805T T17247C G26144T

EPI_ISL_468743
 2020-03-17 2020-06-17
 Belgium hCoV-19/Belgium/UGent-95/2020
 C241T C3037T C14408T C15324T A23403G C28290T

EPI_ISL_468744
 2020-03-17 2020-06-17
 Belgium hCoV-19/Belgium/UGent-96/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_468745
 2020-03-17 2020-06-17
 Belgium hCoV-19/Belgium/UGent-97/2020
 C241T C3037T C5497T C14120T C14408T C15324T A23403G

EPI_ISL_468746
 2020-03-17 2020-06-17
 Belgium hCoV-19/Belgium/UGent-98/2020
 C241T C3037T G4255T C14408T A23403G A26530G

EPI_ISL_468840
 2020-03-17 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2387/2020
 C241T C3037T G8003R C14408T A20268G C22323T A23403G

EPI_ISL_471205
 2020-03-17 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471207
 2020-03-17 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16848T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471252
 2020-03-17 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471553
 2020-03-17 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_5186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471555
 2020-03-17 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_5184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C16289T A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_474862
 2020-03-17 2020-06-23
 Spain hCoV-19/Spain/Granada-COV002875/2020
 C241T C3037T C14408T T22831Y A23403G C24381Y GGG28881AAC C29870A

EPI_ISL_474868
 2020-03-17 2020-06-23
 Spain hCoV-19/Spain/Granada-COV002891/2020
 C241T C3037T C11074T C14408T C18555Y A23403G G23856T C25162T GGG28881AAC

EPI_ISL_474936
 2020-03-17 2020-06-23
 Spain hCoV-19/Spain/Otura-COV002885/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_475060
 2020-03-17 2020-06-23
 Belgium hCoV-19/Belgium/UGent-100/2020
 C241T A1269G C3037T C14408T A20268G A23403G

EPI_ISL_475572
 2020-03-17 2020-06-23
 United Kingdom hCoV-19/England/IC19/2020
 C241T C2416T C3037T C6504T C11620T C14408T C14786T G20578T A23403G G25563T C26907T

EPI_ISL_475814
 2020-03-17 2020-06-25
 Austria hCoV-19/Austria/CeMM0367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3478K A11839G C14408T C16575T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475905
 2020-03-17 2020-06-25
 Austria hCoV-19/Austria/CeMM0554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475962
 2020-03-17 2020-06-25
 Singapore hCoV-19/Singapore/431/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29425S GA29427KR C29738A AAAAAAAAAAAA29892-

EPI_ISL_476803
 2020-03-17 2020-06-26
 China hCoV-19/Hong Kong/VB20050000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9857T G11083T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_476823
 2020-03-17 2020-06-26
 Benin hCoV-19/Benin/260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T2339A C3037T C9891T C14408T C18377T G21830C A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858W

EPI_ISL_476824
 2020-03-17 2020-06-26
 Benin hCoV-19/Benin/501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_476833
 2020-03-17 2020-06-26
 Benin hCoV-19/Benin/461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G11230T T28144C G28167A G28878A G29742A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_476834
 2020-03-17 2020-06-26
 Benin hCoV-19/Benin/314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C679T C3037T T4463C A9204G C9891Y C14408Y C15324T A16034R C16806Y A20597R A23403G G25563T C25688T T25807Y TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_476905 MT827809
 2020-03-17 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-1274/2020
 ATTAAAGGTTTAT1- C36T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_477685
 2020-03-17 2020-06-29
 United States hCoV-19/USA/WA-UW-1282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C313T C2252A C3037T A11348G C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_477824
 2020-03-17 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C12025T C16362T TA19355- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479664 MT679198
 2020-03-17 2020-06-29
 United States SARS-CoV-2/human/USA/NYU-VC-008/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T A4550G C14408T A23403G G25563T AAAAAAAAA29895-

EPI_ISL_479882
 2020-03-17 2020-07-01
 Japan hCoV-19/Japan/PG-0173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C13176T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479938
 2020-03-17 2020-07-01
 Japan hCoV-19/Japan/PG-0253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C1063T C3037T C3737T C4551T A12121G C14408T T18351C A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479939
 2020-03-17 2020-07-01
 Japan hCoV-19/Japan/PG-0254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A895G C2942T G4390T C6037T C8782T C9598T G20134T G24047A T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479940
 2020-03-17 2020-07-01
 Japan hCoV-19/Japan/PG-0255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A895G C2942T G4390T C6037T C8782T C9598T G20134T G24047A T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480383 MT772550
 2020-03-17 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A253G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480384 MT772551
 2020-03-17 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480385 MT772552
 2020-03-17 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480958
 2020-03-17 2020-07-02
 Spain hCoV-19/Spain/Donostia-San_Sebastian_COV003259/2020
 ATG1605- C9811T A26748G

EPI_ISL_482471
 2020-03-17 2020-07-03
 Canada hCoV-19/Canada/NB_54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T8767C C8782T T10771C C17747T A17858G C18060T T28144C ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482476
 2020-03-17 2020-07-03
 Canada hCoV-19/Canada/NS_60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C26781T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482579
 2020-03-17 2020-07-04
 China hCoV-19/Hangzhou/HZCDC6948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T C14805T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482677
 2020-03-17 2020-07-05
 Singapore hCoV-19/Singapore/367/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T

EPI_ISL_483544
 2020-03-17 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T G1397A G8653T G11083T C25587A T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483637
 2020-03-17 2020-07-08
 Hungary hCoV-19/Hungary/SRC_isolate_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29266T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483704
 2020-03-17 2020-07-08
 Israel hCoV-19/Israel/n14269/2020
 C241T C3037T C14408T C17125T C18877T A23403G G25563T

EPI_ISL_483708
 2020-03-17 2020-07-08
 Israel hCoV-19/Israel/n14268/2020
 G1976T C4540T C8782T A9079G T9477A C14805T G19060T G20238T A23631T G25979T T28144C C28311T G28328A C28657T C28863T

EPI_ISL_483715
 2020-03-17 2020-07-08
 Israel hCoV-19/Israel/n14270/2020
 C241T C3037T G7675T C10450T C14408T C18877T A23403G G25563T

EPI_ISL_483937
 2020-03-17 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D2D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483945
 2020-03-17 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D35A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1368C C4158T C6990T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483947
 2020-03-17 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G9923A G11083T C14805T G23868T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485860 MT739466 MT913079
 2020-03-17 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0559/2020
 AT1- C241T C2416T C3037T C10712T C14408T A23403G G25563T

EPI_ISL_485861 MT739467 MT913080
 2020-03-17 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0561/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_485862 MT739468 MT913081
 2020-03-17 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T T5338C C10712T C14408T A23403G G25563T C29870A

EPI_ISL_485867 MT739473 MT913086
 2020-03-17 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0569/2020
 ATTAAAGGTT1- C241T C1059T C3037T A3409G C10319T C14408T A23403G CGATAC25493- G25563T C27964T

EPI_ISL_485868 MT739474 MT913087
 2020-03-17 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0570/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_485869 MT739475 MT913088
 2020-03-17 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_485870 MT739476 MT913089
 2020-03-17 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C5144T C6312A G11083T C13730T C23929T C25669T C28311T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_486423
 2020-03-17 2020-07-10
 Latvia hCoV-19/Latvia/040/2020
 C1912T

EPI_ISL_486650
 2020-03-17 2020-07-10
 Italy hCoV-19/Italy/Hsacco-13/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G27604T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_488588
 2020-03-17 2020-07-14
 United Kingdom hCoV-19/England/NORT-2842EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5884T C14408T A23403G T25202K G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488744
 2020-03-17 2020-07-14
 United Kingdom hCoV-19/England/NORT-2842FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488766
 2020-03-17 2020-07-14
 United Kingdom hCoV-19/England/NORT-28157F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488774
 2020-03-17 2020-07-14
 United Kingdom hCoV-19/England/NORT-281621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488792
 2020-03-17 2020-07-14
 United Kingdom hCoV-19/England/NORT-281612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG518- A1515G C2939T C3140T C6738T C9223T G11083T C14805T T16154C T17247C G18040A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488809
 2020-03-17 2020-07-14
 United Kingdom hCoV-19/England/NORT-281603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C20270T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490997
 2020-03-17 2020-07-15
 United States hCoV-19/USA/LA-UW-MAYO81/2020
 A1G A4D C241T GTCATGTTA510- C1059T C3037T C10319T C14408T T16047C A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_492606
 2020-03-17 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130BE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493199
 2020-03-17 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-003/2020
 ATTAAAGG1- C241T C3037T C14408T C15240T G16647T A20268G A23403G G29734C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873C

EPI_ISL_496482
 2020-03-17 2020-07-24
 Italy hCoV-19/Italy/NegrarVR_9/2020
 A1GGGGGTA C241T C3037T C14408T G17722T A23403G A29872T A29878G A29889T A29898G -29904AGATAAAAGAAATAAAAAAAAAAGACACAAGAAAATAGATAGAGGAAAAAGAAAAAATGAAAAAAACAGG

EPI_ISL_497799
 2020-03-17 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C3037T C6195T C14408T T17568C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498032
 2020-03-17 2020-07-26
 South Korea hCoV-19/Korea/KCDC2131/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_498033
 2020-03-17 2020-07-26
 South Korea hCoV-19/Korea/KCDC2132/2020
 ATTAAAGGTTTATACCTTCC1- G11083T C14805T T17247C G26144T

EPI_ISL_499646
 2020-03-17 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A58F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G15438T A20268G A23403G G29830K

EPI_ISL_499648
 2020-03-17 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499649
 2020-03-17 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A593F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R G8785A

EPI_ISL_499651
 2020-03-17 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A59A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500511
 2020-03-17 2020-07-29
 United States hCoV-19/USA/MA-UW-MAYO41/2020
 ATTAAAGGT1- AAC34TTT C241T C1059T C3037T C6762T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_500513
 2020-03-17 2020-07-29
 United States hCoV-19/USA/GA-UW-MAYO61/2020
 T2H A31T AAC34TTT T490A C3177T C8782T C9430T T18736C T23677C C24034T T26729C C27635T G28077C T28144C A29700G -29904AAAAAAAAAAAAAAAA

EPI_ISL_500521
 2020-03-17 2020-07-29
 United States hCoV-19/USA/LA-UW-MAYO87/2020
 A1G AAC34TTT C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_500716
 2020-03-17 2020-07-29
 Turkey hCoV-19/Turkey/Pen07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C14408T CTATACATGTCTCTGGGACCAATGGTA21762- A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_501221
 2020-03-17 2020-07-31
 Malaysia hCoV-19/Malaysia/7618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_507053
 2020-03-17 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D0C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C7279T G11083T C14805T G26144T C27208T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_508998
 2020-03-17 2020-08-04
 France hCoV-19/France/ARA10441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C241T C2416T C3037T G8371T G11335T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_509699 MT844032
 2020-03-17 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1232/2020
 C241T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509736 MT846440
 2020-03-17 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0678/2020
 AT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510283
 2020-03-17 2020-08-06
 Spain hCoV-19/Spain/COV004044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C17470T C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510284
 2020-03-17 2020-08-06
 Spain hCoV-19/Spain/COV004045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17470T C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510285
 2020-03-17 2020-08-06
 Spain hCoV-19/Spain/COV004046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4255T C6696T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510961
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT0702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510962
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT0703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T A23403G G27463T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511045
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT0786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G18255T G18859T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511046
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT0787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511213
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29511T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511215
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511259
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2704T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511261
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511264
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C2416T C3037T A7479G C12513T C14408T C21575T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511267
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511268
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G246T C3037T C14408T A23403G G24098T C25714T C27335T G27703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511271
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511272
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C14408T G20238T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511274
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G246T C3037T C14408T A23403G G24098T C25714T G27703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511275
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511412
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAA1- C241T C1059T C3037T C14408T A23403G G25563T C28139T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511417
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511428
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511444
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511450
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511455
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T1510C C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511463
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4444T A11983C C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511467
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T1510C C3037T C14408T A23403G GGG28881AAC C29632T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511471
 2020-03-17 2020-08-07
 Portugal hCoV-19/Portugal/PT1512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4444T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512654
 2020-03-17 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C3037T C14408T C15324T A23403G CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_513443 MT886317
 2020-03-17 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T C1722T C3037T G11083T C14408T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513444 MT886318
 2020-03-17 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C2416T C3037T G11534A C14408T A23403G G25563T G26233T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513457 MT886331
 2020-03-17 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGT1- C241T C3037T C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513469 MT886343
 2020-03-17 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513474 MT886348
 2020-03-17 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C2416T C3037T C14408T A23403G G25563T C25693T G26233T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513475 MT886349
 2020-03-17 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513512
 2020-03-17 2020-08-13
 Czech Republic hCoV-19/Czech Republic/NRL_4037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9448T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514308
 2020-03-17 2020-08-16
 Israel hCoV-19/Israel/CVL-n14268/2020
 ATTA1- G1976T C4540T C8782T A9079G T9477A C14805T G19060T G20238T A23631T G25979T T28144C C28311T G28328A C28657T C28863T

EPI_ISL_514309
 2020-03-17 2020-08-16
 Israel hCoV-19/Israel/CVL-n14269/2020
 C241T C3037T C14408T C17125T C18877T A23403G G25563T

EPI_ISL_514310
 2020-03-17 2020-08-16
 Israel hCoV-19/Israel/CVL-n14270/2020
 ATTAA1- C241T C3037T G7675T C10450T C14408T C18877T A23403G G25563T

EPI_ISL_514457
 2020-03-17 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D16AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514459
 2020-03-17 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D16E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T G16475A A20355G A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515308
 2020-03-17 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0021/2020
 ATT1- C241T GTT521- C8782T C14408T C17747T A17858G C18060T A25385G T28144C

EPI_ISL_515309
 2020-03-17 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0022/2020
 ATT1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_515311
 2020-03-17 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0024/2020
 ATTAAA1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_516833
 2020-03-17 2020-08-24
 United Kingdom hCoV-19/England/LOND-1260713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1368C C6990T G11083T C14805T C23707T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516841
 2020-03-17 2020-08-24
 United Kingdom hCoV-19/England/LOND-1260133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516922
 2020-03-17 2020-08-24
 Montenegro hCoV-19/Montenegro/ChVir-1265622002/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_518877 MT920016
 2020-03-17 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A28858G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518881 MT920021
 2020-03-17 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518892 MT920032
 2020-03-17 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A28858G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_521153 MT920019
 2020-03-17 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C12756T C14408T A23403G A28858G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523332
 2020-03-17 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G27505A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524462
 2020-03-17 2020-08-28
 Brazil hCoV-19/Brazil/SP-272/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_524471
 2020-03-17 2020-08-28
 Peru hCoV-19/Peru/JUN-INS-074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C12534T C14408T C18877T A23403G G25563T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_524652
 2020-03-17 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260C8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G600A G1820A A2480G C2558T T8599C G11083T C14805T C24370T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524654
 2020-03-17 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260CAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C6504T C11620T C14408T C14786T G20578T A23403G G25563T C26907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525537
 2020-03-17 2020-08-31
 France hCoV-19/France/ARA10194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525557
 2020-03-17 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-368/2020
 AT1- C241T C3037T A10948G C14408T A23403G GGG28881AAC AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_525617
 2020-03-17 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-18631-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1440A G2891A C7011T G25593C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525618
 2020-03-17 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-18637-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1440A G2891A G4504T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526797
 2020-03-17 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0575/2020
 ATTA1- C241T C3037T C13335T C14408T A23403G C29002T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_526798
 2020-03-17 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T G29868R C29870A

EPI_ISL_526802
 2020-03-17 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0581/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_526804
 2020-03-17 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0583/2020
 C1912T C2676T C8782T A22606T T24725G T28144C G28878A G29742A A29874T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_526805
 2020-03-17 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C C29870A

EPI_ISL_528161
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42194492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C21846T A23403G AGAGGCGGCAGTCAAGCCTCTTCT28802- TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528162
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42194515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528164
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42194551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C2983T C3037T C14408T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528165
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42194578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1820A A2480G C2558T T8599C G11083T C14805T G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528166
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42194826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C2983T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528168
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42194904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C2983T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528169
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42194939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G2833T C3037T C14408T A23403G G24077T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528171
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/AG-UHB-42195061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G11540T C14408T G15380T A23403G G25563T G26155T A26576G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528172
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42195083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528173
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/SO-UHB-42195124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528174
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G C25433T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528175
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42195424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A781G G2944A C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528176
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528178
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G6553T C14408T A20268G A23403G C25658T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528179
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42195605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C14805T C18086T G26144T G28842T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528180
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42195622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G19162T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528183
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C18395T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528185
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C17285T A23403G G27996T G28028T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528186
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T A4236G C14408T A23403G G25563T A29115T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528187
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C7735T C14408T C15324T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528188
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42195888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_528191
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42195951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G G28881T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528193
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42196011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G13201A C14408T A20268G A23403G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528194
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42196028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T G17658T A23403G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_528196
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42196052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C9541T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528198
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42196271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528377
 2020-03-17 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-65238285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528920
 2020-03-17 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE4891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C3037T G6884R C14408Y G22112K A23403G GGG28881AAC AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_530038
 2020-03-17 2020-09-10
 Spain hCoV-19/Spain/MD-LP109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534891
 2020-03-17 2020-09-14
 United Kingdom hCoV-19/England/OXON-B387D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGT1- C241T C1059T C3037T G13926T C14408T A23403G G25563T G29734C AA29880MM AA29886WW AAAAAAAAAAA29893-

EPI_ISL_535820
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00224744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535821
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00224745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535822
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00224793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12741T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535824
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00224812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535825
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00224827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535826
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00224868/2020
 ATTAAAGGTT1- G11083T C14805T T16820C C18166T A21650M G26144T G28842T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535828
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15732T T19143C A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535830
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535832
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23191T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535833
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535834
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27406T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535835
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535836
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C6026T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535839
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C8092T C14408T A15911G A20355G A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535842
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00226142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535844
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00226167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535854
 2020-03-17 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00226938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536533
 2020-03-17 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-138/2020
 ATTAAAG1- C241T C3037T C14408T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536534
 2020-03-17 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-139/2020
 ATT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC

EPI_ISL_536543
 2020-03-17 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-148/2020
 ATTAAAG1- C241T C3037T C14408T A23403G A24862G

EPI_ISL_536560
 2020-03-17 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-167/2020
 ATTAAAG1- C241T C3037T C14408T C15277T A21917G A23403G A26530G

EPI_ISL_537568
 2020-03-17 2020-09-16
 United States hCoV-19/USA/CA-UCLA-36/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_537587
 2020-03-17 2020-09-16
 United States hCoV-19/USA/CA-UCLA-62/2020
 A1- C8782T C11866T C17747T A17858G C18060T T28144C AAAAAAA29897-

EPI_ISL_537595
 2020-03-17 2020-09-16
 United States hCoV-19/USA/CA-UCLA-70/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C22450T A23403G AAAAAAAAAAA29893-

EPI_ISL_537596
 2020-03-17 2020-09-16
 United States hCoV-19/USA/CA-UCLA-71/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C22450T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_537598
 2020-03-17 2020-09-16
 United States hCoV-19/USA/CA-UCLA-77/2020
 ATTAAAGGTTTAT1- C241T C3037T C6196T C14408T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_537599
 2020-03-17 2020-09-16
 United States hCoV-19/USA/CA-UCLA-78/2020
 ATTAAAGGTTTAT1- C241T C379A C1059T C3037T C14408T A23403G G25563T C29284T C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_538439
 2020-03-17 2020-09-17
 Singapore hCoV-19/Singapore/915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538448
 2020-03-17 2020-09-17
 Singapore hCoV-19/Singapore/113nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A T13532C C14408T A23403G G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538881
 2020-03-17 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G2100T A8833G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541340
 2020-03-17 2020-09-22
 Brazil hCoV-19/Brazil/PR-5617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C4927T A6412C A6466G C14408T A23403G G28396A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541341
 2020-03-17 2020-09-22
 Brazil hCoV-19/Brazil/PR-5618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T G11521T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541942
 2020-03-17 2020-09-23
 South Korea hCoV-19/South Korea/IHC3127/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A20268G C20283T A23403G TGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTA27555- G29734C A29871G AAAAAAAAAAAAAAAAA29887-

EPI_ISL_547446
 2020-03-17 2020-09-24
 Netherlands hCoV-19/Aruba/AW-RIVM-10113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2536T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547492
 2020-03-17 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17125T T17247C G26144T G27201T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548349
 2020-03-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3638/2020
 ATTAAAGGTTTATAC1- C8782T C17747T A17858G C18060T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_560623
 2020-03-17 2020-09-29
 France hCoV-19/France/GE8777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G24257T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568914
 2020-03-17 2020-10-02
 France hCoV-19/France/IHU-0650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569256
 2020-03-17 2020-10-02
 France hCoV-19/France/IHU-0030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT327745
 2020-03-17 2020-04-13
 Turkey SARS-CoV-2/human/TUR/ERAGEM-001/2020
 ATTA1- G1397A G11083T G23876A T28688C C29563T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT371573
 2020-03-17 2020-04-15
 Czech Republic SARS-CoV-2/human/CZE/CzechiaMotol_1899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT374109
 2020-03-17 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-13/2020
 ATT1- C241T C3037T C6026T C14408T G22051T A23403G GGG28881AAC AA29902-

MT374110
 2020-03-17 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-14/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T

MT374111
 2020-03-17 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-15/2020
 C241T C3037T C14408T A20268G A23403G G29473A G29734C

MT374113
 2020-03-17 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-17/2020
 ATTA1- C241T C1059T C3037T T3178G C14408T G21225T A23403G G25563T

MT477837
 2020-03-17 2020-05-14
 United States SARS-CoV-2/human/USA/AK010/2020
 ATTAAAGGTTTATACC1- C241T C3037T C6504T C14408T A19403W C21530Y T21585Y A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

MT477838
 2020-03-17 2020-05-14
 United States SARS-CoV-2/human/USA/AK011/2020
 ATTAAAGGTTT1- T2266C C6027T A10236G G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

MT509466
 2020-03-17 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509471
 2020-03-17 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G25726T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509489
 2020-03-17 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1917T C3037T C8697T C14408T A23403G G25563T C27434T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509492
 2020-03-17 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1817G C3037T C14408T A23403G G25563T C26768T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT670018
 2020-03-17 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-26639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706140
 2020-03-17 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706144
 2020-03-17 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706165
 2020-03-17 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A C18171A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706293
 2020-03-17 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706294
 2020-03-17 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT811162
 2020-03-17 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0094-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MW030202
 2020-03-17 2020-09-22
 Peru SARS-CoV-2/human/PER/covper062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030203
 2020-03-17 2020-09-22
 Peru SARS-CoV-2/human/PER/covper063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030212
 2020-03-17 2020-09-22
 Peru SARS-CoV-2/human/PER/covper072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C14408T A23403G A24862G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030227
 2020-03-17 2020-09-22
 Peru SARS-CoV-2/human/PER/covper091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C14408T C15277T A21917G A23403G A26530G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013206
 2020-03-17 2020-06-01
 China hCoV-19/Guangzhou/ID046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A25664W GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_416457
 2020-03-18 2020-03-22
 United States hCoV-19/USA/CA-MG0987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417526
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS9371718/2020
 C241T A618G C3037T C14408T C15324T A23403G

EPI_ISL_417527
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS2848109/2020
 C241T C3037T C5457T A6351M C14408T C15324T C18828T A23403G C29518M AAAAAAAAAAAAAAAA29888-

EPI_ISL_417528
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS3694003/2020
 G11083T C14805T T17247C G26144T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_417529
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS5731562/2020
 A187G C241T C3037T A5421W G11417T C14408T A23403G C29857S GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_417530
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS2128808/2020
 A187G C241T C3037T C14408T C16376Y A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_417531
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS2013896/2020
 C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_417532
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS8489624/2020
 C241T C1059T C3037T C4320T C12406Y C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_417533
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS6282845/2020
 A187G C241T C3037T C13665T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_417534
 2020-03-18 2020-03-27
 Luxembourg hCoV-19/Luxembourg/LNS0158952/2020
 C241T C3037T G11083T C14408T C15324T C16887T A23403G AAAAAAAAAAAAAAAAA29887-

EPI_ISL_417590
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/262/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_417614
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/286/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417615
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/287/2020
 C1457T C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_417619
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/290/2020
 C241T G526T C3037T C12138T C14408T A23403G GGG28881AAC

EPI_ISL_417621
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/292/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_417622
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/293/2020
 C241T T658C C3037T C14408T A23403G A24862G C28629T

EPI_ISL_417625
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/296/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417626
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/297/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417627
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/298/2020
 ATG1605- C20270T A29683T

EPI_ISL_417629
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/300/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_417630
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/301/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417632
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/303/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_417634
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/305/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417635
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/306/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417636
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/307/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417637
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/308/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_417639
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/310/2020
 A161T C241T G2780T C3037T C14408T A20268G A23403G

EPI_ISL_417641
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/312/2020
 C241T C3037T C14408T A23403G A24862G

EPI_ISL_417642
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/313/2020
 C241T C3037T C4002T G10097A C13536T C14408T C19718T A23403G C23731T GGG28881AAC G29527T

EPI_ISL_417643
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/314/2020
 C241T C3037T C4002T G10097A C13536T C14408T C19718T A23403G C23731T GGG28881AAC

EPI_ISL_417644
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/315/2020
 C241T C3037T C14408T C16949T G18756A C19391T A23403G C27046T C28344A GGG28881AAC

EPI_ISL_417645
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/316/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417646
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/317/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_417647
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/318/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_417649
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/320/2020
 ATG1605- C20270T A29683T

EPI_ISL_417650
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/321/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_417652
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/323/2020
 C241T C3037T C14408T A23403G A26530G G29706T

EPI_ISL_417653
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/324/2020
 C5142T G11083T C14805T T17247C G26144T G26620T

EPI_ISL_417654
 2020-03-18 2020-03-27
 Iceland hCoV-19/Iceland/325/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_417918 MT372480
 2020-03-18 2020-03-27
 Malaysia SARS-CoV-2/human/MYS/188407/2020
 C6310A C6312A G11083T C13730T C19524T C23929T T25473C C28311T G29862A G29864R TG29867AA C29870A

EPI_ISL_417931 MT258377
 2020-03-18 2020-03-29
 United States SARS-CoV-2/human/USA/CZB-RR057-005/2020
 ATTAAAGGTTT1- C8090T A8173R G11083T C14805T T17247C G26144T G29868R

EPI_ISL_417932 MT258378
 2020-03-18 2020-03-29
 United States SARS-CoV-2/human/USA/CZB-RR057-006/2020
 ATTA1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_417933 MT258379
 2020-03-18 2020-03-29
 United States SARS-CoV-2/human/USA/CZB-RR057-007/2020
 ATTAAAGG1- C241T C3037T G6680K T10129Y C14408T A23403G GGG28881AAC G29747A

EPI_ISL_417935 MT258380
 2020-03-18 2020-03-29
 United States SARS-CoV-2/human/USA/CZB-RR057-011/2020
 ATTA1- T13Y C241T C1059T C3037T C14408T T15771Y A23403G G25563T

EPI_ISL_417937 MT258381
 2020-03-18 2020-03-29
 United States SARS-CoV-2/human/USA/CZB-RR057-013/2020
 A1- C241T C1059T C3037T T10129Y C11916T C14408T A23403R G25563T C29870M

EPI_ISL_417938 MT258382
 2020-03-18 2020-03-29
 United States SARS-CoV-2/human/USA/CZB-RR057-014/2020
 ATTAAAGGTTTATACC1- C241T A375M T617Y C1059T T2145Y C3037T G4263R C6861Y T10129Y T10906Y T11470W C14408T T15357Y T22843W A23403G T25519Y G25563T T25704W T26524D C29167T T29360K C29364M G29868R C29870M

EPI_ISL_417939 MT258383
 2020-03-18 2020-03-29
 United States SARS-CoV-2/human/USA/CZB-RR057-015/2020
 ATTAAAGGTTTAT1- C241T C1059T T1529K C3037T C14408T T15771Y G18433A A23403G G25563T G29868R

EPI_ISL_417946
 2020-03-18 2020-03-27
 Democratic Republic of the Congo hCoV-19/DRC/82/2020
 ATTAA1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418184
 2020-03-18 2020-03-28
 United States hCoV-19/USA/WI-GMF-00018/2020
 C241T C1059T G2518A C3037T C5183T C14408T C17766T C21302T CG21304AA A23403G G25563T

EPI_ISL_418263
 2020-03-18 2020-03-18
 Greece hCoV-19/Greece/10/2020
 C241T C3037T C14408T C14786T T18126C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_418264
 2020-03-18 2020-03-18
 Greece hCoV-19/Greece/12/2020
 C241T C3037T C14408T A23403G C25771A GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_418265
 2020-03-18 2020-03-18
 Greece hCoV-19/Greece/16/2020
 C8782T C9430T T9477A C14805T A22151G G25979T T28144C C28657T C28863T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_418429
 2020-03-18 2020-03-18
 France hCoV-19/France/ARA10876/2020
 C241T C3037T C4586T A13616G C14408T C19402T C20483T A23403G G25563T G28001T C28308T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418430
 2020-03-18 2020-03-18
 France hCoV-19/France/ARA10910/2020
 C241T C3037T C14408T A23403G G25563T G28086T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_418432
 2020-03-18 2020-03-18
 France hCoV-19/France/ARA11036/2020
 G11083T C14805T T17247C G24368T G26144T C29518T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_418696
 2020-03-18 2020-03-30
 United Kingdom hCoV-19/England/20124009602/2020
 ATG1605- C14760T C20270T T27922G A29683T

EPI_ISL_418718
 2020-03-18 2020-03-30
 United Kingdom hCoV-19/England/20124036902/2020
 A2480G C2558T G4510T G11083T C14805T A25048T G26144T

EPI_ISL_418729
 2020-03-18 2020-03-30
 United Kingdom hCoV-19/England/20124095502/2020
 C241T C842T C3037T C11572T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_418739
 2020-03-18 2020-03-30
 United Kingdom hCoV-19/England/20124101102/2020
 G284T A2480G C2558T G11083T C12068T C14805T G26144T

EPI_ISL_418749
 2020-03-18 2020-03-30
 United Kingdom hCoV-19/England/20126006802/2020
 C241T C3037T C11956T C14408T C16289T A23403G G25429T

EPI_ISL_418751
 2020-03-18 2020-03-30
 United Kingdom hCoV-19/England/20126007102/2020
 T13C C241T C2070T C3037T C5869T C14408T C16289T A23403G G25429T

EPI_ISL_418770
 2020-03-18 2020-03-30
 United Kingdom hCoV-19/England/20126096602/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_418802
 2020-03-18 2020-03-31
 Australia hCoV-19/Australia/QLDID924/2020
 ATTAAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418803
 2020-03-18 2020-03-31
 Australia hCoV-19/Australia/QLDID925/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418804
 2020-03-18 2020-03-31
 Australia hCoV-19/Australia/QLDID926/2020
 ATTAAA1- C241T C3037T C14408T C17118T G21624T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_419305 LC547527
 2020-03-18 2020-04-02
 Japan hCoV-19/Japan/P4-5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_419386
 2020-03-18 2020-04-02
 Portugal hCoV-19/Portugal/IGC00009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_419387
 2020-03-18 2020-04-02
 Portugal hCoV-19/Portugal/IGC00010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A27751T GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_419421
 2020-03-18 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-244FB/2020
 ATTAAAGGTTTA1- G1440R A2480R C2558Y G2891R G11083K C14805Y C25669Y G26144K G28851K G29742R

EPI_ISL_419438
 2020-03-18 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-2469B/2020
 ATTA1- C241T C3037Y C14408T C14805Y A23403G G25979K T28144Y C28863Y GGG28881RRS AAAAAAAAA29895-

EPI_ISL_419443
 2020-03-18 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-246E6/2020
 ATTA1- C241T C3037T C14408T A20268G A23403G C24240T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419696
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC35/2020
 C2676T T6329C C8782T A22606T T28144C G28878A G29742A

EPI_ISL_419697
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC36/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_419698
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC37/2020
 C2676T C8782T A22606T T28144C G28878A G29742A

EPI_ISL_419700
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC39/2020
 C241T C1059T C3037T C11916T G13900T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_419702
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC41/2020
 C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G

EPI_ISL_419703
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC42/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25088T G25563T C28821A

EPI_ISL_419704
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC43/2020
 C241T C1059T C3037T C14408T C17746T A23403G C23453T G25563T

EPI_ISL_419705
 2020-03-18 2020-04-03
 United States hCoV-19/USA/NY-NYUMC44/2020
 C241T C1059T C1917T C3037T C10138T C14408T A23403G C23893T G25563T

EPI_ISL_419714 MT451017
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C4400T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419715 MT451020
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419716 MT451019
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC110/2020
 ATT1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419717 MT451024
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC115/2020
 A1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419718 MT451018
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419821 MT451021
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC112/2020
 ATTAAAGGTT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419822 MT451022
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC113/2020
 ATTAAAGGTTT1- C241T CC1059TY C2523T C3037T C14408T A23403G G25563T

EPI_ISL_419855 MT451062
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC158/2020
 A1- C241T C1059T C3037T G8102T C14408T G14712A C14877T G17193T A23403G G25563T

EPI_ISL_419856 MT451063
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C8782T C9803T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419857 MT451064
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC160/2020
 ATTAAAG1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419859 MT451065
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC162/2020
 ATT1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419860 MT451066
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC163/2020
 ATT1- C241T C2507T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_419862 MT451068
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419863 MT451069
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T A4316G G11113T C14408T A23403G G25563T

EPI_ISL_419864 MT451070
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C379A C1059T C2595Y C3037T C14408T C22224T A23403G G25563T G27163T

EPI_ISL_419866 MT451072
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G11083T C14805T G26144T G28842T

EPI_ISL_419867 MT451073
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C13740T C14408T C15324T C23206T A23403G A29869R

EPI_ISL_419868 MT451074
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G388T A2480G C2558T G11083T G11376T C14805T T22965C G26144T C27600T

EPI_ISL_419869 MT451075
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC172/2020
 ATTAAAGGTTTA1- A2480G C2558T G11083T G11376T C14805T G26144T C27600T

EPI_ISL_419870 MT451076
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC173/2020
 ATTAAAGGTT1- C3253T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_419871 MT451077
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC174/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G

EPI_ISL_419872 MT451078
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A20755C C22982M A23403G G25563T C29247T

EPI_ISL_419873 MT451079
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC176/2020
 ATTAAA1- G11083T G13627T C14805T C15540T G26144T A28338G

EPI_ISL_419875 MT451081
 2020-03-18 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC178/2020
 AT1- A4T C241T C3037T C14408T A23403G T25473C T27233C GGG28881AAC

EPI_ISL_420043
 2020-03-18 2020-04-04
 France hCoV-19/France/IDF2792/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_420044
 2020-03-18 2020-04-04
 France hCoV-19/France/HF2797/2020
 C241T C3037T C14408T C15324T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_420048
 2020-03-18 2020-04-04
 France hCoV-19/France/IDF2936/2020
 C241T C1059T C3037T T13006C C14408T T21585G A23403G G25563T C25688T G27514T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_420080
 2020-03-18 2020-04-05
 Russia hCoV-19/Russia/StPetersburg-RII3992/2020
 C241T C3037T C14408T A23403G

EPI_ISL_420081
 2020-03-18 2020-04-05
 Russia hCoV-19/Russia/StPetersburg-RII3997/2020
 C241T C1059T C3037T C14408T C21781T G21974C A23403G G25563T C29272T C29415T

EPI_ISL_420083
 2020-03-18 2020-04-05
 Taiwan hCoV-19/Taiwan/128/2020
 ATTA1- C241T C3037T C14408T C15324T A22404T A23403G TT29845GA G29862T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_420130
 2020-03-18 2020-04-05
 Spain hCoV-19/Spain/Valencia49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13538R C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420131
 2020-03-18 2020-04-05
 Spain hCoV-19/Spain/Valencia50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17126C A20268G A23403G C27263T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420132
 2020-03-18 2020-04-05
 Spain hCoV-19/Spain/Valencia51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A30T C241T C3037T C14408T A20268G A23122W A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420296
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC45/2020
 C241T C1059T C3037T C6402T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_420297
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC46/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_420299
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC48/2020
 C241T C1059T C3037T C10078T C14408T A23403G G25563T

EPI_ISL_420300
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC49/2020
 C241T C1059T C3037T C11878T C11916T C14408T A16534G C18998T A23403G G25563T G29540A

EPI_ISL_420301
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC50/2020
 C241T C1059T G2281T C3037T C14408T C18457T A23403G G25563T

EPI_ISL_420302
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC51/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_420312
 2020-03-18 2020-04-06
 Norway hCoV-19/Norway/2114/2020
 ATTAAA1- C241T C1059T C3037T A6133G C14408T G20419T A23403G G25563T

EPI_ISL_420358
 2020-03-18 2020-04-06
 Belgium hCoV-19/Belgium/VD-0318102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420359
 2020-03-18 2020-04-06
 Belgium hCoV-19/Belgium/UM-0318103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420360
 2020-03-18 2020-04-06
 Belgium hCoV-19/Belgium/VL-0318104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420362
 2020-03-18 2020-04-06
 Belgium hCoV-19/Belgium/DA-0319106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14178T C14408T A23403G G24794T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420563
 2020-03-18 2020-04-06
 Italy hCoV-19/Italy/TE5166/2020
 ATTA1- C48M C241T C3037T C4668M C14408T A23403G A29903-

EPI_ISL_420571
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC56/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_420573
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC58/2020
 C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G

EPI_ISL_420575
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC60/2020
 C241T C1059T C3037T C6402T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_420577
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC62/2020
 C241T G598T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_420578
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC63/2020
 C241T C1059T C3037T A3450G C14408T A23403G G25563T

EPI_ISL_420579
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC64/2020
 C241T C1059T C3037T C10449T C14408T A23403G G25563T

EPI_ISL_420580
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC65/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_420581
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC66/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_420585
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC69/2020
 C241T C3037T C14408T A23403G

EPI_ISL_420587
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC71/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420588
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC72/2020
 C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T

EPI_ISL_420589
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC73/2020
 C241T C1059T C3037T G12793T C14408T A23403G G25563T

EPI_ISL_420590
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC74/2020
 C241T G598T C1059T C3037T C9166T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_420591
 2020-03-18 2020-04-06
 United States hCoV-19/USA/NY-NYUMC75/2020
 C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC

EPI_ISL_420599
 2020-03-18 2020-04-06
 Argentina hCoV-19/Argentina/C1374/2020
 C241T C3037T C5392T C6449T C14408T C18877T A23403G G25563T

EPI_ISL_421275
 2020-03-18 2020-04-07
 Russia hCoV-19/Russia/Moscow_PMVL-1/2020
 C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T C27406T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_421300
 2020-03-18 2020-04-07
 United States hCoV-19/USA/WI-UW-42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6814C G11083T C14408T G22203T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421310
 2020-03-18 2020-04-07
 United States hCoV-19/USA/WI-UW-52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421311
 2020-03-18 2020-04-07
 United States hCoV-19/USA/WI-UW-53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A C18171A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421314
 2020-03-18 2020-04-07
 United States hCoV-19/USA/WI-UW-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6884T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421383 MT370883
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C3037T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421384 MT370835
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421388 MT370833
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421389 MT370860
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421390 MT370908
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C2416T C3037T C3168T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421391 MT370836
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T G28077T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421393 MT370848
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- TCTTAATGACAACCT1600- C8782T G12274A C13115T T25541C C26088T T28144C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421396 MT370856
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T T28061C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421402 MT370897
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421406 MT370896
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421407 MT370885
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421408 MT370869
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G11083T C14408T C16293T A23403G A25575C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421409 MT370844
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T A2165G C3037T C4810T C14408T A23403G G25563T G29711T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421410 MT370831
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T A11101G C11916T C14408T C18998T G21830T G22468T A23403G G25563T G29540A GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_421411 MT370920
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421412 MT370858
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T C28849T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421413 MT370870
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421414 MT370863
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C619T C1059T C3037T C14408T A14912G C20844T A23403G G25563T T28199C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421416 MT370875
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421419 MT370890
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T G2632T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421420 MT370834
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C28836T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421421 MT370882
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T G29540A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421423 MT370837
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421424 MT370898
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421428 MT370845
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421431 MT370864
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C5140T C14408T A23403G G25644T GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421435 MT370851
 2020-03-18 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV09000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C11003T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421446
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G24095T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421447
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421448
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421449
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4201T C14408T A23403G C26527T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421450
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421451
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421452
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421453
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421454
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T T19839C A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421455
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T721C C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421457
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G1440A G2891A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421482
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T A12097G C14408T C19572T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421483
 2020-03-18 2020-04-08
 Portugal hCoV-19/Portugal/PT0080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421551
 2020-03-18 2020-04-08
 United States hCoV-19/USA/WY-WYPHL015/2020
 C241T C1059T C3037T C4633T C14408T A23403G G25563T

EPI_ISL_421577
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC76/2020
 C241T C1059T C3037T C4947T C14408T A23403G G25563T

EPI_ISL_421578
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC77/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_421579
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC78/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_421581
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC80/2020
 C241T C1059T C3037T C6267T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_421582
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC81/2020
 C241T C3037T C14408T C18877T C21952T A23403G G25563T

EPI_ISL_421583
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC82/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_421584
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NJ-NYUMC83/2020
 C241T G675C C1059T C3037T C11916T C14408T C18998T A23403G G25563T C27476T G29540A

EPI_ISL_421585
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NJ-NYUMC84/2020
 C241T C1059T C3037T C13133T C14408T A23403G G25563T

EPI_ISL_421586
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC85/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_421587
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC86/2020
 C241T C1059T C3037T C3738T C14408T A23403G G25563T

EPI_ISL_421588
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC87/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_421589
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC88/2020
 C241T C1059T C3037T C7006T C8645T C14408T A20755C A23403G G25563T

EPI_ISL_421590
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC89/2020
 C241T C1059T C3037T G6443A C14408T A23403G G25563T G28827T

EPI_ISL_421591
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC90/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_421592
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC91/2020
 C241T C3037T C11289T C14408T T14619C C18877T C19938T A23403G G25563T

EPI_ISL_421627 MT370926
 2020-03-18 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T GAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29766-

EPI_ISL_421630 MT370987
 2020-03-18 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1917T C3037T C7716T C14408T G20005A T21458C A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_421631 MT370960
 2020-03-18 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C11916T C14408T T18519C C19220T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_421633 MT370957
 2020-03-18 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- G11083T C14805T T17247C G26144T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_421706
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC94/2020
 C241T T986C C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_421709
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC97/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29239A G29540A

EPI_ISL_421710
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC98/2020
 C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T

EPI_ISL_421711
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC99/2020
 G1730A G11083T C14805T T17247C G26144T

EPI_ISL_421714
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC102/2020
 G443A C2676T C8782T A22606T T28144C G28878A G29742A

EPI_ISL_421716
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC104/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CGATCGAGTG29750-

EPI_ISL_421717
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC105/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_421718
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NJ-NYUMC106/2020
 G174T C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_421720
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC108/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_421722
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC110/2020
 C241T C1059T C3037T G13126A C14408T A23403G G25563T

EPI_ISL_421723
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NJ-NYUMC111/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_421724
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC112/2020
 C241T C3037T G10265A C14408T A23403G GGG28881AAC

EPI_ISL_421725
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC113/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_421726
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC114/2020
 C241T C1059T G1125A C3037T C14408T A23403G G25563T

EPI_ISL_421727
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC115/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_421728
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC116/2020
 C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A18410G A23403G G25563T A26433G

EPI_ISL_421729
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC117/2020
 C241T C1059T C3037T C11916T C13517T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_421730
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC118/2020
 C241T C1059T C3037T C14408T G17572T G21809T A23403G G25563T

EPI_ISL_421731
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC119/2020
 C241T C1059T C3037T C12676T C14408T A23403G G25563T C27686T

EPI_ISL_421732
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC120/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_421733
 2020-03-18 2020-04-09
 United States hCoV-19/USA/NY-NYUMC121/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_422416
 2020-03-18 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU14/2020
 C241T C3037T C14408T A23403G G23856T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422417
 2020-03-18 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU15/2020
 C241T C3037T C7321T C13862T C14408T A23403G C28836T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422645 LR877934
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C4668T C27920T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422650 LR878176
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1743A C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422651 LR878168
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422652 LR878197
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C20320T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422653 LR878190
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C11074T G11083T C14805T G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422655 LR878191
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2380G C3037T C3447T C12374T C14408T A23403G G24368T G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422656 LR878196
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2380G C3037T C3447T C12374T C14408T A23403G G24368T G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422657 LR878188
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC G28975A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422669 LR878210
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C275A C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422853 LR878174
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C275A C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422854 LR878181
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26428T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422856 LR878183
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T C28737T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422857 LR878172
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C16762T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422890 LR877941
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422901 LR878203
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422913 LR877728
 2020-03-18 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18828T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422975 MT293170
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAG1- C8782T C17747T A17858G C18060T T28144C -29865AAA TG29867AA C29870A

EPI_ISL_422975 MT293170
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAG1- C8782T C17747T A17858G C18060T T28144C -29865AAA TG29867AA C29870A

EPI_ISL_422986 MT293181
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW416/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C8782T C17747T A17858G C18060T T28144C A29869T

EPI_ISL_422986 MT293181
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW416/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C8782T C17747T A17858G C18060T T28144C A29869T

EPI_ISL_422987 MT293182
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW417/2020
 ATTAAAG1- G8C TACCTTCCCAGGTAACAAACCAACC13- C241T C1059T C3037T C14408T G17808T A23403G G25563T C27964T AAAAA29899-

EPI_ISL_422987 MT293182
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW417/2020
 ATTAAAG1- G8C TACCTTCCCAGGTAACAAACCAACC13- C241T C1059T C3037T C14408T G17808T A23403G G25563T C27964T AAAAA29899-

EPI_ISL_422988 MT293183
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW418/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C4990T C8782T C17747T A17858G C18060T C19325T G25252A A27398G A27525G T28144C A29903-

EPI_ISL_422988 MT293183
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW418/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C4990T C8782T C17747T A17858G C18060T C19325T G25252A A27398G A27525G T28144C A29903-

EPI_ISL_422989 MT293184
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATA1- C5784T C8782T C17747T A17858G C18060T G20580T G26730A T28144C C29253T AAAAAAAAA29895-

EPI_ISL_422989 MT293184
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATA1- C5784T C8782T C17747T A17858G C18060T G20580T G26730A T28144C C29253T AAAAAAAAA29895-

EPI_ISL_422990
 2020-03-18 2020-04-12
 United States hCoV-19/USA/WA-UW-1295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAA1- C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_422993
 2020-03-18 2020-04-12
 United States hCoV-19/USA/WA-UW-1321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTG1- T5098C C8782T C17747T A17858G C18060T G21255C T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_422994 MT293189
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW424/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T G15760A A23403G G25563T AAAAAAAAA29895-

EPI_ISL_422994 MT293189
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW424/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T G15760A A23403G G25563T AAAAAAAAA29895-

EPI_ISL_422999 MT293194
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAA1- C8782T C17747T A17858G C18060T G22984A T27384C T28144C -29904ANAAANAA

EPI_ISL_422999 MT293194
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAA1- C8782T C17747T A17858G C18060T G22984A T27384C T28144C -29904ANAAANAA

EPI_ISL_423000
 2020-03-18 2020-04-12
 United States hCoV-19/USA/WA-UW-1420/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T A29903-

EPI_ISL_423010 MT293204
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW441/2020
 ATTAAAG1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_423010 MT293204
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW441/2020
 ATTAAAG1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_423025 MT293218
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A6693G C8782T C17747T A17858G C18060T C25339T T28144C G29868C AA29902-

EPI_ISL_423025 MT293218
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A6693G C8782T C17747T A17858G C18060T C25339T T28144C G29868C AA29902-

EPI_ISL_423026 MT293219
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW457/2020
 ATTAAAGGTTTATACC1- C241T C3037T A7479G C14408T A20268G A23403G G29734C AA29902-

EPI_ISL_423026 MT293219
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW457/2020
 ATTAAAGGTTTATACC1- C241T C3037T A7479G C14408T A20268G A23403G G29734C AA29902-

EPI_ISL_423027
 2020-03-18 2020-04-12
 United States hCoV-19/USA/WA-UW-1473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- G1401A C8782T -11277ATACTAGTTTGTCTGGTTTTAAGCTAAAAGACTGTGTTATGTATGCATCAGCTGTAGTGTTACTAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGATATGGTTGGATA G14490A C17747T A17858G C18060T T19044C -27850TTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATTATCACAACTGTAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN C27920T T28144C -29904ANANAHA

EPI_ISL_423028 MT293220
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW460/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T T6394C C10319T C14408T A23403G G25563T C27964T AAA29901-

EPI_ISL_423028 MT293220
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW460/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T T6394C C10319T C14408T A23403G G25563T C27964T AAA29901-

EPI_ISL_423030 MT293222
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C14408T A23403G C25096T G25563T G29868D A29903-

EPI_ISL_423030 MT293222
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C14408T A23403G C25096T G25563T G29868D A29903-

EPI_ISL_423032 MT293224
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW465/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A35T C37H C241T C1059T T2551C C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_423032 MT293224
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW465/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A35T C37H C241T C1059T T2551C C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_423033 MT293225
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW466/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AACC34TTTH C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAA29890-

EPI_ISL_423033 MT293225
 2020-03-18 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW466/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AACC34TTTH C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAA29890-

EPI_ISL_423043
 2020-03-18 2020-04-12
 Thailand hCoV-19/Thailand/Bangkok-0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC C29666T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_423053
 2020-03-18 2020-04-12
 United Kingdom hCoV-19/England/20134002104/2020
 C241T C3037T C14408T A23403G A26530R

EPI_ISL_423948
 2020-03-18 2020-04-12
 United Kingdom hCoV-19/England/20128018804/2020
 C241T C1059T T1592C C3037T C14408T A23403G G23856T G25563T

EPI_ISL_424180 MT326187
 2020-03-18 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1294/2020
 A1G T3C C3587T C8782T C17747T A17858G C18060T T28144C -29904ANANANANANAAAAA

EPI_ISL_424182 MT326189
 2020-03-18 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1478/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T -29904ANANANATAD

EPI_ISL_424183 MT326190
 2020-03-18 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1436/2020
 ATTA1GAGT A35T C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904GANAAAAANA

EPI_ISL_424184 MT326191
 2020-03-18 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- TCT83CTC GG90-C C241T C1059T C3037T C14408T A23403G G25563T G29553A A29865C A29869T -29904ANAGAGAGAG

EPI_ISL_424377
 2020-03-18 2020-04-13
 Iceland hCoV-19/Iceland/353/2020
 C241T G845T C3037T C14408T A23403G A26530G

EPI_ISL_424403
 2020-03-18 2020-04-13
 Iceland hCoV-19/Iceland/379/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_424974
 2020-03-18 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-18/2020
 AT1- C241T C3037T C14408T A23403G G25785T GGG28881AAC

EPI_ISL_424975
 2020-03-18 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-19/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T A29903-

EPI_ISL_424978
 2020-03-18 2020-04-14
 Taiwan hCoV-19/Taiwan/CGMH-CGU-20/2020
 AT1- C241T C3037T C14408T A23403G C25810T GGG28881AAC

EPI_ISL_425125 MT582459
 2020-03-18 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-41/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425126 MT582458
 2020-03-18 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-42/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_425348
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74B42/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425382
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74E85/2020
 A7479G C14805T T17247C C25572T G26144T C28887T

EPI_ISL_425488
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E05C/2020
 ATG1605- A7824G C20270T

EPI_ISL_425489
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E06B/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_425491
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E089/2020
 ATG1605- C1912T A2501G G13960A A18153G

EPI_ISL_425492
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E098/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_425494
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E0B6/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425495
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E0C5/2020
 ATG1605- C20270T

EPI_ISL_425504
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E186/2020
 A2480G C2558T C9924T G11083T C14805T C21998T G26144T

EPI_ISL_425505
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E195/2020
 ATG1605- G17110T C19011T G29032A

EPI_ISL_425645
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EB79/2020
 C241T C3037T C14408T T15351G G21518T A23403G

EPI_ISL_425722
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G21624T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425727
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425729
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425732
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G C2710G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425734
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G C2710G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425737
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T G12832A C14805T T17247C G26144T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_425741
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228Y C241T C3037T C14408T C15981Y T17126C A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425747
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2401A C3037T C14408T A20268G A23403G C25916T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425856
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB052/2020
 C14805T T17247C C19484T

EPI_ISL_425861
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB057/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425862
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB058/2020
 C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_425906
 2020-03-18 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB124/2020
 C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_426357
 2020-03-18 2020-04-16
 Czech Republic hCoV-19/Czech Republic/Seq4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426360
 2020-03-18 2020-04-16
 Czech Republic hCoV-19/Czech Republic/Seq7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426507
 2020-03-18 2020-04-17
 United States hCoV-19/USA/AZ-TG268360/2020
 C241T C1059T C3037T G13998A C14408T C17733T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426509
 2020-03-18 2020-04-17
 United States hCoV-19/USA/AZ-TG268629/2020
 C241T C1059T C3037T T6025C C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426640 MT451222
 2020-03-18 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_426642 MT451224
 2020-03-18 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC333/2020
 ATTA1- C241T C3037T C14408T A23403G T25473C T27233C GGG28881AAC

EPI_ISL_427043
 2020-03-18 2020-04-17
 Greece hCoV-19/Greece/13/2020
 C241T C3037T C14408T A23403G GGG28881AAC C28887T AAAAAAAAAAAAAA29890-

EPI_ISL_427281
 2020-03-18 2020-04-17
 United States hCoV-19/USA/MN-MDH-142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037Y C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427292
 2020-03-18 2020-04-18
 Brazil hCoV-19/Brazil/AL-837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC CTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29784-

EPI_ISL_427515
 2020-03-18 2020-04-18
 United States hCoV-19/USA/NY-NYUMC220/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_427516
 2020-03-18 2020-04-18
 United States hCoV-19/USA/NY-NYUMC221/2020
 C241T C1059T C3037T C14408T C18329T A23403G G25563T

EPI_ISL_427518
 2020-03-18 2020-04-18
 United States hCoV-19/USA/NY-NYUMC223/2020
 C241T C1059T G2809T C3037T C14408T A23403G G25563T

EPI_ISL_427519
 2020-03-18 2020-04-18
 United States hCoV-19/USA/NY-NYUMC224/2020
 C241T C1059T C3037T A11781G C14408T G16381A A23403G G25563T

EPI_ISL_427520
 2020-03-18 2020-04-18
 United States hCoV-19/USA/NY-NYUMC225/2020
 C241T C1059T C3037T C5817T C14408T G22289T A23403G G25563T

EPI_ISL_427521
 2020-03-18 2020-04-18
 United States hCoV-19/USA/NY-NYUMC226/2020
 C241T C1059T C3037T C14408T A23403G C25006T G25563T

EPI_ISL_428229
 2020-03-18 2020-04-20
 Taiwan hCoV-19/Taiwan/TSGH-12/2020
 C241T C3037T G6236T C14408T C14585T A23403G -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_428263
 2020-03-18 2020-04-20
 United States hCoV-19/USA/WI-UW-167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428714
 2020-03-18 2020-04-21
 Turkey hCoV-19/Turkey/HSGM-5602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_428715
 2020-03-18 2020-04-21
 Turkey hCoV-19/Turkey/HSGM-5624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14178T C14408T C18877T A23403G G25563T G26718T C26735T

EPI_ISL_428716
 2020-03-18 2020-04-21
 Turkey hCoV-19/Turkey/HSGM-5711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_429007 MT385431
 2020-03-18 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0458/2020
 ATTA1- C10632T

EPI_ISL_429171
 2020-03-18 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0035/2020
 A1- A895G C2942T G4390T C8782T C9598T G20134T C21859T G24047A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_429196
 2020-03-18 2020-04-23
 Switzerland hCoV-19/Switzerland/GE3144/2020
 ATTAAAGGTTTA1- C241T C3037T C4012T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429309
 2020-03-18 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH63/2020
 C241T C1059T C3037T G10465A C14408T C21742T A23403G G25563T G28899T

EPI_ISL_429312
 2020-03-18 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH66/2020
 C241T C1059T C3037T T8788C C14408T G22205T A23403G G25563T G26951A

EPI_ISL_429315
 2020-03-18 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH74/2020
 C241T C3037T C10369T C14408T A20268G C20759T A23403G G29734C

EPI_ISL_429316
 2020-03-18 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-HH75/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429750
 2020-03-18 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS9598665/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28857A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_429818
 2020-03-18 2020-04-24
 Canada hCoV-19/Canada/MB_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C12710T C14408T G21989T C22792T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429819
 2020-03-18 2020-04-24
 Canada hCoV-19/Canada/MB_38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G11083T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430204 MT632531
 2020-03-18 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S166/2020
 G373A C8782T C17747T A17858G C18060T G26143T T27384C T28144C

EPI_ISL_430205 MT632504
 2020-03-18 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S167/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430206 MT632533
 2020-03-18 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S168/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430207 MT632536
 2020-03-18 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S169/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430819
 2020-03-18 2020-04-28
 Egypt hCoV-19/Egypt/NRC-03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGT1- C241T C3037T C14408T C18877T G19006T A23403G G25563T C26735T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430842
 2020-03-18 2020-04-28
 Thailand hCoV-19/Thailand/NIH-2982/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C14408T C14786T A23403G G25563T G28857A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_431016
 2020-03-18 2020-04-29
 United States hCoV-19/USA/AK-PHL016/2020
 ATTAAAGGTTTAT1- T2266C C6027T A10236G G11083T C14805T T17247C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_431784
 2020-03-18 2020-04-29
 China hCoV-19/Fujian/IM3520017T/2020
 ATTAAAGGTTTATAC1- A3531G C6312A A10508G G11083T C13730T C23929T C28311T -29840C T29848A -29852A -29863T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_434540
 2020-03-18 2020-04-29
 Costa Rica hCoV-19/Costa Rica/0004/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T G15380T A23403G G25563T AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACA29812- A29893G

EPI_ISL_434708
 2020-03-18 2020-05-01
 Thailand hCoV-19/Thailand/NIH-2982-2/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C14408T C14786T A23403G G25563T G28857A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_434780
 2020-03-18 2020-05-01
 United States hCoV-19/USA/TX-HMH071/2020
 C241T C1059T C3037T C14408T G17808T A23403G G25563T T27384C C27964T

EPI_ISL_434783
 2020-03-18 2020-05-01
 United States hCoV-19/USA/TX-HMH074/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_435064
 2020-03-18 2020-05-02
 India hCoV-19/India/NCDC-01705/2020
 C241T C1059T C3037T T8022K C9039M C14408T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_435066
 2020-03-18 2020-05-02
 India hCoV-19/India/NCDC-01711/2020
 GA72RM C241T C3037T T8022K A8026W C9039M C10039Y C14408T C18877T G20274K A22102W C22444T T22515Y A23403G G25563T C26735T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435067
 2020-03-18 2020-05-02
 India hCoV-19/India/NCDC-01712/2020
 C241T C3037T T8022K C10039T T13402K T13408K C14408T C18877T C22444T C22458T A23403G AG24389MS G25563T C26735T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435068
 2020-03-18 2020-05-02
 India hCoV-19/India/NCDC-01757/2020
 C241T C1063Y C3037T T8022K C10039Y T13402K C14408T C18877T C22444T A23403G T23965W G25563T C26735T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435069
 2020-03-18 2020-05-02
 India hCoV-19/India/NCDC-01744/2020
 C241T C3037T T8022K A8026W G8137R C9039M T13402K C14408T C18877T C22444T T22515Y A23403G G25563T C26735T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_435143
 2020-03-18 2020-05-03
 United Arab Emirates hCoV-19/United Arab Emirates/L9768/2020
 C241T GTTATG515- C3037T C14408T C16323T A23403G C28770T GGG28881AAC

EPI_ISL_435317
 2020-03-18 2020-05-04
 Vietnam hCoV-19/Vietnam/VNHN_01097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A6502G G11083T C14805T G26144T G28842T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_435697
 2020-03-18 2020-05-05
 Singapore hCoV-19/Singapore/92/2020
 ATTAAAGGTTTA1- C241T A761G C1059T C3037T T8482Y G11083T C14408T G17259T A23403G G25563T A27736G CTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29788-

EPI_ISL_435698
 2020-03-18 2020-05-05
 Singapore hCoV-19/Singapore/93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACT1- A2480G C2558T C3593Y C7420T G11083T C14805T G19021K C22323T G26144T G28178K CTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29803-

EPI_ISL_435699
 2020-03-18 2020-05-05
 Singapore hCoV-19/Singapore/94/2020
 ATTAAAGGTTTATACCT1- C241T C3037T T8517W G13205T C14408T G21430R G21624R A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_435700
 2020-03-18 2020-05-05
 Singapore hCoV-19/Singapore/95/2020
 ATTA1- C241T C1059T A2018G C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_436080 MT434810
 2020-03-18 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0988NYC/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436201
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1882T C3037T C14408T A23403G C29144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436203
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1882T C3037T C14408T A23403G C26461G TGG26465- C29144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436227
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436230
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8729C C14408T A20268G A23403G G29734C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436231
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C313T C3037T C14408T A23403G GGG28881AAC C29585T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436238
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436240
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T G1882T C3037T C14408T A23403G C29144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436241
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T T9477A C12357T C14805T A22151G G25979T T28144C C28511T C28657T C28863T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436242
 2020-03-18 2020-05-06
 Spain hCoV-19/Spain/Valencia147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G G29734C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436822 MT439265
 2020-03-18 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20110/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C14408T A23403G G25563T G25565R TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436823 MT439252
 2020-03-18 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747Y A17858G C18060T A24694T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436824 MT439254
 2020-03-18 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20175/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T G3246T C14408T G15760A A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437206
 2020-03-18 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0005/2020
 C241T C3037T C14408T G19825T A23403G GGG28881AAC

EPI_ISL_437332
 2020-03-18 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-4698/2020
 ATTAAA1- C228T C2416T C3037T G8371T G11083T C14408T A23403G G25563T C26549T C27103T AAAAAAAAAAAAAAAA29888-

EPI_ISL_437481
 2020-03-18 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah19/2020
 C241T C3037T C14408T C18877T TTA21991- G22205C A23403G G25563T C26735T

EPI_ISL_437605 MT447173
 2020-03-18 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI205929-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C40T T42C C44T A895G C2942T G4390T C8782T C9598T C13329T G20134T G24047A G27877T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437606 MT447172
 2020-03-18 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI205529-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T T658C C3037T G4300T C14408T G19542T A23403G A24862G C28629T C29253T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860C

EPI_ISL_437625
 2020-03-18 2020-05-11
 Poland hCoV-19/Poland/Wro-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_437635
 2020-03-18 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1102/2020
 C241T C3037T C7834T C14408T A15847G A23403G

EPI_ISL_437887 MT459888
 2020-03-18 2020-05-11
 Greece SARS-CoV-2/human/GRC/220_35357/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437966
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0106/2020
 C241T C3037T C14408T T22521K A23403G A24862G C28629T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437971
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0113/2020
 C241T C1059T C3037T C14408T C16716Y G20709T T22521K A23403G G25563T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_437972
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0114/2020
 G1440A G2891R C7011T G11083T T22521K AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437973
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0115/2020
 C241T C3037T C14408T A20268G T22521K A23403G G28851T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438061
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0228/2020
 C241T C3037T C14408T T22521K A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438062
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0229/2020
 C241T C1059T C3037T C14408T C19145Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438063
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0230/2020
 C241T C3037T C9665T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_438064
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0232/2020
 G1508A G11083T C14805T T14832C T22521K C23707T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_438065
 2020-03-18 2020-05-12
 Austria hCoV-19/Austria/CeMM0233/2020
 C8782T T9530K C26088T T27801C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_438246
 2020-03-18 2020-05-12
 United States hCoV-19/USA/MD-HP00104/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_440288
 2020-03-18 2020-05-12
 United Kingdom hCoV-19/England/CAMB-736F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T C28054T G28812T

EPI_ISL_441409
 2020-03-18 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1023C8/2020
 ATTAAAGGTTTA1- A1515G T7831C C9223T G11083T C14805T T17247C A17799G G26144T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_441414
 2020-03-18 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G600A G1820A A2480G C2558T T8599C G11083T C14805T T18070Y A23128M C24370T G26144T C29870A

EPI_ISL_441422
 2020-03-18 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB42A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T T22371Y A23403G GGG28881AAC C29870A

EPI_ISL_441428
 2020-03-18 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB484/2020
 ATTAAAG1- C241T C3037T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_441430
 2020-03-18 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB4A2/2020
 ATTAAAGGTT1- ATG1605- C6696T C11001T T22729C C25844T C29870A

EPI_ISL_441433
 2020-03-18 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB4DF/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C13862T C14408T A23403G C28836T

EPI_ISL_443188
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/96/2020
 G1266R G2528A C6312A G11083T C13730T C23929T C25658T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443197
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/105/2020
 T76W T78K C241T C3037T T11638C C14408T T14887Y A23403G GGG28881AAC C29708T AAAAAAAAAAAA29892-

EPI_ISL_443200
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/108/2020
 T23487G AAAAAAAAAAAA29892-

EPI_ISL_443202
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/110/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_443203
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/111/2020
 G198R C203Y T277Y T283Y C6312A A6692R A8302R G11083T C13730T C16646Y C19374T T21632Y C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443204
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/112/2020
 C241T C3037T C14408T A21137G A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443205
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/113/2020
 C241T C3037T C3373A C4206Y T13532C C14408T A23403G G25906T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443206
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/114/2020
 C4683T AAAAAAAAAAAA29892-

EPI_ISL_443207
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/115/2020
 G11083T C14805T T17247C G26144T AAAAAAAAAAAA29892-

EPI_ISL_443208
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/116/2020
 C241T C3037T T3466C C13862T C14408T C15352T A23403G C28836T G29229A AAAAAAAAAAAA29892-

EPI_ISL_443209
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/117/2020
 C241T C1059T C3037T C5884T C13487T C14408T C22858T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_443210
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/118/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443211
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/119/2020
 C4069T C26985Y AAAAAAAAAAAA29892-

EPI_ISL_443214
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/122/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443215
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/123/2020
 C241T C1059T T2461A C3037T G14290T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_443228
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/136/2020
 C17010Y AAAAAAAAAAAA29892-

EPI_ISL_443241
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/149/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443243
 2020-03-18 2020-05-12
 Singapore hCoV-19/Singapore/151/2020
 C241T C1059T C3037T C14408T A23403G G24764K C25006Y C25047S G25563T G29737S AAAAAAAAAAAA29892-

EPI_ISL_443267
 2020-03-18 2020-05-12
 France hCoV-19/France/B5325/2020
 C36T C241T C1427T C3037T C6195T C14408T T17568C A23403G G24872T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_443268
 2020-03-18 2020-05-12
 France hCoV-19/France/B5336/2020
 C241T C1059T C3037T C14184T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_444022
 2020-03-18 2020-05-13
 United States hCoV-19/USA/TX_GCID_192000003/2020
 ATTA1- AA5GC C241T C1059T C3037T G3892T C14408T A23403G G25563T A29883G AAAAAAAAAAAAAAAAAA29886G

EPI_ISL_444275 MT479224
 2020-03-18 2020-05-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-22/2020
 ATT1- CTATACATGTCTCTGGGACCAATGGTA21762- ATCAGACTCAGACTA23583- C28776A A29903-

EPI_ISL_444560
 2020-03-18 2020-05-14
 United States hCoV-19/USA/IL-NM065/2020
 A15426G G29711T

EPI_ISL_444566
 2020-03-18 2020-05-14
 United States hCoV-19/USA/IL-NM071/2020
 T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G

EPI_ISL_444567
 2020-03-18 2020-05-14
 United States hCoV-19/USA/IL-NM072/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28313T C28896G A29700G

EPI_ISL_444776
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NY-NYUMC659/2020
 C241T C1059T C3037T C6926T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444777
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NY-NYUMC660/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444780
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NJ-NYUMC663/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_444781
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NY-NYUMC664/2020
 C241T C1059T C3037T C14408T C17976T G20238T A23403G G25563T

EPI_ISL_444784
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NY-NYUMC667/2020
 C241T C3037T C14408T T15264C A23403G

EPI_ISL_444789
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NY-NYUMC672/2020
 C241T C1059T G1820A C3037T C10851T C14408T A23403G C25047T G25563T

EPI_ISL_444790
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NY-NYUMC673/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444791
 2020-03-18 2020-05-14
 United States hCoV-19/USA/NY-NYUMC674/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29364T T29515C

EPI_ISL_444897
 2020-03-18 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-770/2020
 C241T C3037T C7834T C14408T C16887T A23403G

EPI_ISL_444898
 2020-03-18 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-773/2020
 C241T C1059T C3037T C14408T A23403G G25563T A29797T

EPI_ISL_444899
 2020-03-18 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-774/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_445360
 2020-03-18 2020-05-15
 Chile hCoV-19/Chile/Santiago_64/2020
 ATT1TCC AGG6GAA C241T G1319A C3037T C8389T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_445361
 2020-03-18 2020-05-15
 Chile hCoV-19/Chile/Santiago_65/2020
 TT2AC -5GAT C241T C3037T C14408T T19590C A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_447200 MT506649
 2020-03-18 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20230/2020
 C241T C1059T C3037T A14224R C14408T A23403G G25563T

EPI_ISL_447324
 2020-03-18 2020-05-17
 Israel hCoV-19/Israel/51140315/2020
 A8040G G11083T C14805T T17247C G17590T C17676T G26144T G26660T C29627T AAAAAAAAAAAA29892-

EPI_ISL_447642 MT459887
 2020-03-18 2020-05-11
 Greece SARS-CoV-2/human/GRC/219_35198/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_450011
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450012
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450013
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T C28849T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450014
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C12488T C14408T A23403G G25563T A28482G C29421T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450015
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_450016
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T T11271C C17747T A17858G C18060T T28144C C28708T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450017
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G11083T C14805T G26144T G28842T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_450019
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1917T C3037T C14408T G15571T A23403G C23895T G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450020
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T C29640T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_450021
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C13536T C14408T A23403G C23453T G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450022
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T GCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29773-

EPI_ISL_450023
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- T6691C C7843T G11083T A13768G C14805T A15869T T17247C C17639T G19542T G26144T C28915T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450024
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T C25916T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450025
 2020-03-18 2020-05-19
 United States hCoV-19/USA/NY-PV09337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T T15264C A23403G GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450468 MT499194
 2020-03-18 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1219/2020
 ATTAAAGGTTTA1- C14262T

EPI_ISL_450506 MT350282
 2020-03-18 2020-04-16
 Brazil SARS-CoV-2/human/BRA/SP02cc/2020
 C2388T G11083T C14805T T17247C T21784A G26144T

EPI_ISL_451935
 2020-03-18 2020-05-25
 Belgium hCoV-19/Belgium/20A30/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C15324T A23403G G29862A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_452034
 2020-03-18 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-159/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452300
 2020-03-18 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20426/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_452301
 2020-03-18 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20427/2020
 C241T C1059T C1093Y C3037T C14408T A23403G G25563T

EPI_ISL_452303
 2020-03-18 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20429/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAA29900-

EPI_ISL_452348
 2020-03-18 2020-05-27
 China hCoV-19/Beijing/DT-travelHU02/2020
 C241T G2229A C3037T C14408T T20891G C20896G A23403G A24950T T25519C GGG28881AAC

EPI_ISL_452503
 2020-03-18 2020-05-27
 Spain hCoV-19/Spain/COV001398/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_454049
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C2878T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454050
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454053
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G5230T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454057
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2305T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454061
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454062
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11455T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454063
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454065
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2704T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454068
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454069
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454070
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G5230T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454071
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T C19185T A23403G GGG28881AAC CGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29750-

EPI_ISL_454128
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1594T C3037T C11109T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454229
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11674T C14408T C20031A A23403G C27046T GGG28881AAC G29392T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454342
 2020-03-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T28678C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454581
 2020-03-18 2020-05-28
 Croatia hCoV-19/Croatia/1146_Split/2020
 ATTAAA1- C241Y C3037Y G6865K C14408T A23403G A25531R G25593S C26456Y GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_454583
 2020-03-18 2020-05-28
 Croatia hCoV-19/Croatia/1560_Split/2020
 ATTAAA1- C241T C3037T C14408T A23403G G25593C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_454765
 2020-03-18 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G13564T C14408T A23403G C24023T C27046T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_454953
 2020-03-18 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-201/2020
 T7734C T28144C

EPI_ISL_454960
 2020-03-18 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-211/2020
 T2390C C4683T G26144T

EPI_ISL_454971
 2020-03-18 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-226/2020
 G26144T

EPI_ISL_454979
 2020-03-18 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-238/2020
 C11190T T28144C

EPI_ISL_455208
 2020-03-18 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455209
 2020-03-18 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455387
 2020-03-18 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-199/2020
 A7886G A13917C G14677- T28144C

EPI_ISL_455393
 2020-03-18 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-234/2020
 A15217- A29078- C29303T

EPI_ISL_455442
 2020-03-18 2020-05-29
 Poland hCoV-19/Poland/PL_P29/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455583
 2020-03-18 2020-06-01
 Thailand hCoV-19/Thailand/Nonthaburi_2982/2020
 C241T C1059T C3037T C14408T C14786T A23403G G25563T G28857A AAAAAAAAAAAA29892-

EPI_ISL_455694
 2020-03-18 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1098/2020
 C241T C3037T G4908A C14408T A23403G C27679T GGG28881AAC

EPI_ISL_455695
 2020-03-18 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1099/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_455696
 2020-03-18 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1167/2020
 C241T G370A C3037T C14408T C18877T A23403G G25563T

EPI_ISL_456165
 2020-03-18 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0760/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_456167
 2020-03-18 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0765/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_456168
 2020-03-18 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0770/2020
 A1515G C9223T G11083T C14805T T17247C G21795A G26144T

EPI_ISL_456173
 2020-03-18 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0988/2020
 A2480G C2558T A4411T C11074T G11083T C14805T G26144T

EPI_ISL_457812 MT646082
 2020-03-18 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00119/2020
 C241T C2416T C3037T G4523A C10712T C14408T A21958C A23403G G25563T

EPI_ISL_457814 MT646084
 2020-03-18 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00122/2020
 T212A C233T C241T C1059T C3037T C8683T C14408T A23403G G25563T

EPI_ISL_457819 MT646090
 2020-03-18 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00131/2020
 C241T C2416T C3037T C9430T C14408T A23403G G25563T G26233T

EPI_ISL_457977
 2020-03-18 2020-06-02
 Oman hCoV-19/Oman/RESP-20-2850/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_457978
 2020-03-18 2020-06-02
 Oman hCoV-19/Oman/RESP-20-2857/2020
 T17247C G26144T

EPI_ISL_457979
 2020-03-18 2020-06-02
 Oman hCoV-19/Oman/RESP-20-3080/2020
 C40T C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457980
 2020-03-18 2020-06-02
 Oman hCoV-19/Oman/RESP-20-3515/2020
 C241T C3037T A5220T T8110G C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_457985
 2020-03-18 2020-06-02
 Oman hCoV-19/Oman/RESP-20-3343/2020
 C241T C3037T A6466G C14408T A23403G

EPI_ISL_458017
 2020-03-18 2020-06-03
 United States hCoV-19/USA/NY-NYUMC878/2020
 G199T C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_458018
 2020-03-18 2020-06-03
 United States hCoV-19/USA/NY-NYUMC879/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_458020
 2020-03-18 2020-06-03
 United States hCoV-19/USA/NY-NYUMC881/2020
 C241T T1918C C3037T C14408T C18877T A23403G G25563T

EPI_ISL_458021
 2020-03-18 2020-06-03
 United States hCoV-19/USA/NY-NYUMC882/2020
 G11083T C14805T G26144T G28842T

EPI_ISL_458139
 2020-03-18 2020-06-03
 Brazil hCoV-19/Brazil/AC162535-IEC/2020
 C241T C3037T G7677T C14408T C21058T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_459856
 2020-03-18 2020-06-04
 Chile hCoV-19/Chile/EstacionCentral-26347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1319A C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459866
 2020-03-18 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-01/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T G19677T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856CT

EPI_ISL_459955
 2020-03-18 2020-06-05
 Malaysia hCoV-19/Malaysia/IMR_WC2665/2020
 ATTAAAG1- C6312A G11083T C13730T G23162A C23929T C28311T G29861TCTGCAACTCGTTCCTCAAGGGAC T29867A A29869T A29872G A29874G AA29877GG A29882C -29884TGTTTT A29886G -29889TGTACTT -A29892TTTTTGTGCAATTCACCAGTGAATTCATT A29895G AA29898CT A29901T -29904TTTTCATTGTGA

EPI_ISL_460070
 2020-03-18 2020-06-05
 United States hCoV-19/USA/MN-MDH-87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A2480G C2558T C10908T G11083T C14805T G15372T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_460071
 2020-03-18 2020-06-05
 United States hCoV-19/USA/MN-MDH-89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T C20762T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_460178 MT520253
 2020-03-18 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C17747T A17858G C18060T A24694T T28144C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_460262 MT520337
 2020-03-18 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00523/2020
 ATTAAA1- C241T C1059T A2165G C3037T C14408T A23403G G25563T -29564TA G29711T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_460344 MT520419
 2020-03-18 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G1148T A1515G C9223T G11083T C14805T T17247C G26144T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460413 MT520488
 2020-03-18 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C36T C241T C2416T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460458 MT520533
 2020-03-18 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00525/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T C3037T C14408T G22361T A23403G C24096A G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460655
 2020-03-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G C25482T G25563T G26101T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460667
 2020-03-18 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G25996T C29548A G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460698
 2020-03-18 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461259
 2020-03-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461287
 2020-03-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15342T C22712T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462284
 2020-03-18 2020-06-08
 Singapore hCoV-19/Singapore/166/2020
 C241T C1059T C3037T T6394C C10319T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_462405
 2020-03-18 2020-06-08
 Singapore hCoV-19/Singapore/287/2020
 C241T C1059T C3037T C6336T T8423Y C10582T C14408T A19098C A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_463001 MT499215
 2020-03-18 2020-05-20
 Tunisia SARS-CoV-2/human/TUN/COV0010-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- T41C A361G T5557C A8658G C8782T C13495T G22468T T28144C G28878A AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_463990
 2020-03-18 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S53/2020
 ATTAAAGGTTTATA1- C241T C3037T G4201T C14408T TTTGTATGTAAATAAACATGCATTCCACACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAA19293- TACCATTTTTCTATTACTCTGACAGTCCATGTGAG19364- C19402T GAAAACAAGTAGTGTCAGATATAGATTATGTACCACTAAAGTCTGCT19406- T19460- C19465- TAGG19475- T19479A G19481T T19487- T19497- GTACAGATTGTATCTCGAT19509A GCT19549- A23403G C26527T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_467062
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV002910/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_467086
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV002603/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_467089
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV002605/2020
 C241T C1059T C1609T C3037T T3331C G11042T C12400T C14408T A23403G G25563T G25650K

EPI_ISL_467118
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001473/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29353Y

EPI_ISL_467120
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001540/2020
 C8782T T9477A T14458C C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467125
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001530/2020
 G4936C G5558A C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467128
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001477/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_467133
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001521/2020
 TGGTCATGTTATGGT508- C8782T T9477A C14805T G25979T G28109T T28144C C28657T C28863T

EPI_ISL_467143
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001435/2020
 C8782T T9477A T10455G C14805T C21789T G25979T T28144C C28291T C28657T C28863T C29870A

EPI_ISL_467149
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001628/2020
 G1148T C8782T T9477A T12175G C12412T C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467163
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001478/2020
 C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T C29870A

EPI_ISL_467168
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001616/2020
 C8782T T9477A G11266R C12970T C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467169
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001621/2020
 C2003T C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467176
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001619/2020
 C8782T C9165T T9477A C14805T G25979T C27389T T28144C C28657T C28863T C29870A

EPI_ISL_467178
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001482/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467179
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001462/2020
 C241T C3037T C14408T G15438T A20268G A23403G G25049T

EPI_ISL_467181
 2020-03-18 2020-06-12
 Spain hCoV-19/Spain/COV001526/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467374
 2020-03-18 2020-06-13
 Indonesia hCoV-19/Indonesia/SMR-EIJK05/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C23577T C29614T AAAAAAAAAAAAAA29890-

EPI_ISL_467411
 2020-03-18 2020-06-13
 United States hCoV-19/USA/NY-NYUMC918/2020
 C241T C1059T C3037T C14408T G16744A A23403G C25463T G25563T

EPI_ISL_467412
 2020-03-18 2020-06-13
 United States hCoV-19/USA/NY-NYUMC919/2020
 C241T C1059T C3037T C6573T C14408T A23403G G25563T

EPI_ISL_467413
 2020-03-18 2020-06-13
 United States hCoV-19/USA/NY-NYUMC920/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26625T

EPI_ISL_467417
 2020-03-18 2020-06-13
 United States hCoV-19/USA/NY-NYUMC924/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_467421
 2020-03-18 2020-06-13
 United States hCoV-19/USA/NY-NYUMC928/2020
 C241T C2416T C3037T C14408T A23403G G25563T C26942T

EPI_ISL_467422
 2020-03-18 2020-06-13
 United States hCoV-19/USA/NY-NYUMC929/2020
 C241T C1059T C3037T C14408T A23403G C25463T G25563T

EPI_ISL_467952
 2020-03-18 2020-06-16
 United States hCoV-19/USA/CA-SR0418/2020
 C241T C1059T A2018G C3037T C14408T A23403G G25563T

EPI_ISL_467955
 2020-03-18 2020-06-16
 United States hCoV-19/USA/CA-SR0424/2020
 C241T C1059T A2018G C3037T C14408T A23403G G25563T

EPI_ISL_467969
 2020-03-18 2020-06-16
 United States hCoV-19/USA/CA-SR0444/2020
 C241T C3037T C5869T C6402T T14133C C14408T A20268G A23403G C27603T G29734C

EPI_ISL_468063 MT365025
 2020-03-18 2020-04-20
 United States SARS-CoV-2/human/USA/USA-KY-9A06/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_468064 MT365026
 2020-03-18 2020-04-20
 United States SARS-CoV-2/human/USA/USA-KY-9A10/2020
 C8782T T15411C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAA29889-

EPI_ISL_468065 MT365027
 2020-03-18 2020-04-20
 United States SARS-CoV-2/human/USA/USA-KY-9E09/2020
 T3172C C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAA29889-

EPI_ISL_468495 MT628219
 2020-03-18 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G816A C1912T C8782T G12331R C17747Y A17858G C18060T C20182Y C21005T T27462Y T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_468509 MT628232
 2020-03-18 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1578/2020
 C4776T C8782T C17747Y A17858G C18060T G28086K T28144C

EPI_ISL_468510 MT628233
 2020-03-18 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C8389T C14408T C20233Y A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_468914
 2020-03-18 2020-06-17
 Italy hCoV-19/Italy/IZSPB_703/2020
 A1TTGGAGCCCGA C241T C3037T C14408T T15978C A23403G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_469016
 2020-03-18 2020-06-17
 Italy hCoV-19/Italy/IZSPB_706/2020
 A1GGCCGGA C241T C3037T C13225T C14408T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_469283
 2020-03-18 2020-06-18
 France hCoV-19/France/221_61/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C8964T C14408T A23403G G25563T G28808T

EPI_ISL_469284
 2020-03-18 2020-06-18
 France hCoV-19/France/220_95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C2416T C3037T G8371T C14408T A23403G C23635T G25563T

EPI_ISL_471472
 2020-03-18 2020-06-22
 Spain hCoV-19/Spain/Irsicaixa-JP/2020
 C241T C3037T G5230T A8113T C14408T C15963T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_474869
 2020-03-18 2020-06-23
 Spain hCoV-19/Spain/Granada-COV002908/2020
 C241T C3037T C7303Y C14408T A17861M A20268G A23403G

EPI_ISL_474934
 2020-03-18 2020-06-23
 Spain hCoV-19/Spain/Murcia-COV002894/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_475062
 2020-03-18 2020-06-23
 Belgium hCoV-19/Belgium/UGent-102/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_475067
 2020-03-18 2020-06-23
 Belgium hCoV-19/Belgium/UGent-107/2020
 C241T C2401T C3037T G4255T C14408T A23403G G26268T A26530G G29431T

EPI_ISL_475069
 2020-03-18 2020-06-23
 Belgium hCoV-19/Belgium/UGent-109/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_475070
 2020-03-18 2020-06-23
 Belgium hCoV-19/Belgium/UGent-110/2020
 C241T C3037T C5497T C14120T C14408T C15324T A23403G

EPI_ISL_475072
 2020-03-18 2020-06-23
 Belgium hCoV-19/Belgium/UGent-112/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_475139
 2020-03-18 2020-06-23
 Sweden hCoV-19/Sweden/20-50435/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475562
 2020-03-18 2020-06-23
 Sweden hCoV-19/Sweden/20-05983/2020
 T514C ATG1605- C2610T C17410T G24368T

EPI_ISL_475563
 2020-03-18 2020-06-23
 Sweden hCoV-19/Sweden/20-05984/2020
 T514C ATG1605- C2610T C17410T G24368T

EPI_ISL_475948
 2020-03-18 2020-06-25
 Singapore hCoV-19/Singapore/417/2020
 C6336T T8613Y C9559T G11083T C14805T T17247C A19134G C19186T G20839A C22088T G26144T C27596T C27679T AAAAAAAAAAAA29892-

EPI_ISL_475963
 2020-03-18 2020-06-25
 Singapore hCoV-19/Singapore/432/2020
 G109R A895G A2172R C2676Y C2942T G4390T C8782T C9598Y T10249Y C14408Y C16375Y C17573Y G20134T T20834Y G24047A G25124K T28144C G29392R T29457Y AAAAAAAAAAAA29892-

EPI_ISL_477172
 2020-03-18 2020-06-29
 Singapore hCoV-19/Singapore/431nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477686
 2020-03-18 2020-06-29
 United States hCoV-19/USA/WA-UW-1412/2020
 ATTAAAGGT1- A31T AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G29553A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_477687
 2020-03-18 2020-06-29
 United States hCoV-19/USA/WA-UW-1481/2020
 A4- A31T C36T C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_477690
 2020-03-18 2020-06-29
 United States hCoV-19/USA/WA-UW-1617/2020
 ATTAAAGGTTTATACC1- A31T AAC34TTT C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_478541
 2020-03-18 2020-06-30
 United Kingdom hCoV-19/England/NORT-284327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479214
 2020-03-18 2020-06-30
 United Kingdom hCoV-19/England/SHEF-C5702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1347T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479218
 2020-03-18 2020-06-30
 United Kingdom hCoV-19/England/SHEF-C6446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A C1911T G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479883
 2020-03-18 2020-07-01
 Japan hCoV-19/Japan/PG-0174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C925T C1059T C3037T C5310T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479884
 2020-03-18 2020-07-01
 Japan hCoV-19/Japan/PG-0175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C925T C1059T C3037T C5310T C14408T A23403G G25563T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479908
 2020-03-18 2020-07-01
 Japan hCoV-19/Japan/PG-0208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479934
 2020-03-18 2020-07-01
 Japan hCoV-19/Japan/PG-0246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A20268G A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479935
 2020-03-18 2020-07-01
 Japan hCoV-19/Japan/PG-0247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G C27247T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_479967
 2020-03-18 2020-07-01
 Japan hCoV-19/Japan/PG-0289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480387 MT772554
 2020-03-18 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A A2430C C3177T C8782T C9142T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482323
 2020-03-18 2020-07-03
 United States hCoV-19/USA/OR-PROV-041/2020
 C5672T G11083T C14805T G26144T

EPI_ISL_482463
 2020-03-18 2020-07-03
 United States hCoV-19/USA/OR-PROV-228/2020
 C8782T C9565T C15240T C17747T A17858G C18060T C21774T T28144C

EPI_ISL_482464
 2020-03-18 2020-07-03
 United States hCoV-19/USA/OR-PROV-229/2020
 A4236G G11083T A14258G C14805T T25655C G26144T

EPI_ISL_482477
 2020-03-18 2020-07-03
 Canada hCoV-19/Canada/NS_61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6723T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482580
 2020-03-18 2020-07-04
 China hCoV-19/Hangzhou/HZCDC7019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T C14805T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483003
 2020-03-18 2020-07-06
 United States hCoV-19/USA/MN-MDH-1282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_483550
 2020-03-18 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C2939T C3037T C13667T C14408T A23403G C26111T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483717
 2020-03-18 2020-07-08
 Israel hCoV-19/Israel/n14271/2020
 C241T C3037T G11083T C14408T A23403G G28086A

EPI_ISL_483948
 2020-03-18 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483952
 2020-03-18 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D3C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T23849C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485856 MT739462 MT913075
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0555/2020
 ATTA1- C241T C1059T C2156T C3037T C14408T A23403G G25563T C26801T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_485857 MT739463 MT913076
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C3373A G7553A C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_485858 MT739464 MT913077
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A1515G C9223T G11083T A12207G C14805T T17247C A17799G G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485859 MT739465 MT913078
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0558/2020
 ATTAAA1- C241T C1059T G2288A C3037T C14408T A23403G T25541C G25563T

EPI_ISL_485863 MT739469 MT913082
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0564/2020
 ATTAAAGGTTTATACC1- C241T C2416T C3037T C10626T C10712T C14408T A23403G G25563T C29733T

EPI_ISL_485864 MT739470 MT913083
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485865 MT739471 MT913084
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_485866 MT739472 MT913085
 2020-03-18 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C14786T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_488508
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-284293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C1912T T25202K C26022T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488541
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-2842A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G G5180R C8090T C10789T G19999T T25202K A29115G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488757
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-2816C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G G1599K C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488762
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-28166D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488794
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-28172E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488799
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-28173D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A18982T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488805
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-281630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16329T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488818
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-281797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A21405T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488823
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-28168B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A ATG1605- C20270T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488828
 2020-03-18 2020-07-14
 United Kingdom hCoV-19/England/NORT-28164F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490112
 2020-03-18 2020-07-15
 Czech Republic hCoV-19/Czech Republic/NRL_3969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490988
 2020-03-18 2020-07-15
 United States hCoV-19/USA/FL-UW-MAYO68/2020
 ATTAAAGGT1- C36T C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_490998
 2020-03-18 2020-07-15
 United States hCoV-19/USA/LA-UW-MAYO82/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AAC34TTT C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_491093
 2020-03-18 2020-07-16
 Czech Republic hCoV-19/Czech Republic/NRL_4039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6828T C14408T A23403G C27247T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491117
 2020-03-18 2020-07-16
 Czech Republic hCoV-19/Czech Republic/NRL_5201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491448
 2020-03-18 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0037/2020
 ATTAAAGGTTTATACCTTCCCAG1- A27C C241T C3037T T9630C C14408T C16915T C21638T A23403G G26143A TTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29820-

EPI_ISL_491450
 2020-03-18 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1059T C3037T C7528T C14408T A23403G G25563T G28001T C29585T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_491454
 2020-03-18 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0043/2020
 ATTAAAGG1- A35G C241T C3037T G5230T C14408T A20268G A23403G CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_492116
 2020-03-18 2020-07-20
 Australia hCoV-19/Australia/SAP159/2020
 AT1- C241T C313T C3037T C14408T A23403G G24998T GGG28881AAC G28960T

EPI_ISL_492122
 2020-03-18 2020-07-20
 Australia hCoV-19/Australia/SAP181/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_492980
 2020-03-18 2020-07-20
 Italy hCoV-19/Italy/NegrarVR_1/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_493200
 2020-03-18 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-005/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G C23679T G25563T G28857A -29904AAAAAAAAAAAAAAAAAAAAGAAA

EPI_ISL_496919
 2020-03-18 2020-07-24
 United States hCoV-19/USA/MN-MDH-1333/2020
 A4- C8782T G18816T T28144C G28878A G29742A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_497736
 2020-03-18 2020-07-25
 Colombia hCoV-19/Colombia/81402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497773
 2020-03-18 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18348T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497810
 2020-03-18 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5170T C5974T C14408T C15324T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497820
 2020-03-18 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497840
 2020-03-18 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497864
 2020-03-18 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C5526T C14408T A15984T C20946T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497870
 2020-03-18 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3256C C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498037
 2020-03-18 2020-07-26
 South Korea hCoV-19/Korea/KCDC2136/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C

EPI_ISL_498552
 2020-03-18 2020-07-27
 Lebanon hCoV-19/Lebanon/LB-LR9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C313T C3037T C9474T C14408T A23403G GGG28881AAC

EPI_ISL_499302
 2020-03-18 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1F90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499702
 2020-03-18 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A635E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T4885C G7743T G11083T C14805T T21880C G26144T

EPI_ISL_499708
 2020-03-18 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A643D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G21624T A23403G GGG28881AAC C29870A

EPI_ISL_499709
 2020-03-18 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A644C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_499714
 2020-03-18 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A64C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T C22264T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_499716
 2020-03-18 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A64F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2558T G6271R G7798K G11083T C14805T G26144T C29870A

EPI_ISL_500503
 2020-03-18 2020-07-29
 United States hCoV-19/USA/NY-UW-MAYO21/2020
 T2C AAC34TTT C241T C1059T C3037T C10851T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_500504
 2020-03-18 2020-07-29
 United States hCoV-19/USA/NY-UW-MAYO23/2020
 AT1- T3G AAC34TTT C241T C1059T C3037T C3587T C14408T A21137G A23403G G25563T -29904AAAAAAAAAAAAA

EPI_ISL_500508
 2020-03-18 2020-07-29
 United States hCoV-19/USA/CO-UW-MAYO33/2020
 AT1- AAC34TTT C241T C1059T C3037T C6629T C14408T T19363C C20132T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_500509
 2020-03-18 2020-07-29
 United States hCoV-19/USA/CO-UW-MAYO37/2020
 A1G A31H AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T CGGAGT29743- A29903-

EPI_ISL_500514
 2020-03-18 2020-07-29
 United States hCoV-19/USA/GA-UW-MAYO62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AC35WT C241T C1059T C3037T C14408T A23403G G25563T -29904A

EPI_ISL_500519
 2020-03-18 2020-07-29
 United States hCoV-19/USA/WI-UW-MAYO8/2020
 A1G C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T -29904AAAAAAAAAAA

EPI_ISL_500643
 2020-03-18 2020-07-29
 Australia hCoV-19/Australia/NSW2172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G578A C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500644
 2020-03-18 2020-07-29
 Australia hCoV-19/Australia/NSW2173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4788T C14408T C14786T C21233T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500646
 2020-03-18 2020-07-29
 Australia hCoV-19/Australia/NSW2175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500676
 2020-03-18 2020-07-29
 Australia hCoV-19/Australia/NSW2228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500831 MT911796
 2020-03-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0573/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A20268G C21597T A23403G

EPI_ISL_501223
 2020-03-18 2020-07-31
 Malaysia hCoV-19/Malaysia/8454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C1663M TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501224
 2020-03-18 2020-07-31
 Malaysia hCoV-19/Malaysia/8816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_507021 MT820472
 2020-03-18 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507022 MT820473
 2020-03-18 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC17/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507054
 2020-03-18 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D0D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C20844T A23403G C26534T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_507055
 2020-03-18 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D0E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC G29645T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_507056
 2020-03-18 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D0F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T G6981A G11083T C14805T A16687G G26144T A28349T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508124
 2020-03-18 2020-08-04
 Australia hCoV-19/Australia/SAP433/2020
 AT1- C241T C3037T C14408T A23403G G24077T

EPI_ISL_508805 MT834649
 2020-03-18 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0601/2020
 ATTA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508807 MT834651
 2020-03-18 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0603/2020
 AT1- C8782T C17747T A17858G C18060T A20549G A26108G T28144C TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_508871
 2020-03-18 2020-08-04
 France hCoV-19/France/ARA01890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCT1- C241T C2070T C3037T C14408T C18263A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508882
 2020-03-18 2020-08-04
 France hCoV-19/France/ARA10823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGG1- C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508883
 2020-03-18 2020-08-04
 France hCoV-19/France/ARA10825/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T G11365T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508909
 2020-03-18 2020-08-04
 France hCoV-19/France/MP01829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G GGG28881AAC C29409T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508999
 2020-03-18 2020-08-04
 France hCoV-19/France/ARA10580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G6404T C8208T C14408T C15324T A23403G C29362T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509000
 2020-03-18 2020-08-04
 France hCoV-19/France/ARA10821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T1270C C3037T A11319G C14408T C15324T C16762T A23403G C28818T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_509001
 2020-03-18 2020-08-04
 France hCoV-19/France/ARA10863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T G2995T C3037T C8293T C14408T T18488C A23403G T24739C A26530G G28086T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_509700 MT844033
 2020-03-18 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1233/2020
 C241T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_510290
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- G3250K C8782T T9477A C14805T A22151G G25979T T28144C C28511T C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510291
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G C28893T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510293
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510294
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G2398A C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510296
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510298
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510300
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510301
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510302
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T A6313R C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510303
 2020-03-18 2020-08-06
 Spain hCoV-19/Spain/COV004065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037Y C14408T T17126C A20268G A23403G G28376K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_511052
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT0793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511216
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C10582T C14408T G15327T A21817T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511217
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C16733T C21621T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511218
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T C12815T C14408T C23248T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511219
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511220
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511221
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511276
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T G21019A A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511277
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C17745T C19502G C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511281
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G370T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511283
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G11083T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511284
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511287
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1832G C3037T C14408T C20936T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511288
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511289
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511294
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8334T C14408T C19017T G20238T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511295
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511429
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3267T C5055T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511472
 2020-03-18 2020-08-07
 Portugal hCoV-19/Portugal/PT1513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1868A C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511896
 2020-03-18 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_1166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C4733T C14408T A23403G G25563T G28812T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_512860
 2020-03-18 2020-08-12
 Thailand hCoV-19/Thailand/Bangkok-CONI-0210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_512861
 2020-03-18 2020-08-12
 Thailand hCoV-19/Thailand/Bangkok-CONI-0211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- A2480G C2558T G11083T C11355T C14805T G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_512862
 2020-03-18 2020-08-12
 Thailand hCoV-19/Thailand/Bangkok-CONI-0212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A2480G C2558T C6070T G11083T C14805T G26144T G27201K

EPI_ISL_513298 MT704816
 2020-03-18 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_1ZK/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26372T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_513310 MT873892
 2020-03-18 2020-08-11
 United Kingdom SARS-CoV-2/human/GBR/USAFSAM-S026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_513458 MT886332
 2020-03-18 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C14408T T19527C A23403G G25563T C27964T C28099T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513459 MT886333
 2020-03-18 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- G204T C241T C1059T C3037T G8676T C14408T A23403G C23733A G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513488 MT886362
 2020-03-18 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513492 MT886366
 2020-03-18 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C18877T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513773 MW036039
 2020-03-18 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2277/2020
 G331S T967Y G29711T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514311
 2020-03-18 2020-08-16
 Israel hCoV-19/Israel/CVL-n14271/2020
 ATTAAAGGTTT1- C241T C3037T G11083T C14408T A23403G G28086A

EPI_ISL_514460
 2020-03-18 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D16F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514462
 2020-03-18 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D1710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514463
 2020-03-18 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D172F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T C21575T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514638 MT892985
 2020-03-18 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1419/2020
 ATTAAAGGTTTATACCT1- G3122T C8782T C17747T A17858G C18060T A24694T C26176T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515312
 2020-03-18 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0025/2020
 ATT1- C241T C3037T C14408T T19776C A23403G GGG28881AAC

EPI_ISL_515527
 2020-03-18 2020-08-19
 Brazil hCoV-19/Brazil/SP-624/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_516082 MT483879
 2020-03-18 2020-05-18
 Italy SARS-CoV-2/human/ITA/43950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T A6684G C14408T C15126Y A23403G A23884R A26530G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516281
 2020-03-18 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_516282
 2020-03-18 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_516923
 2020-03-18 2020-08-24
 Montenegro hCoV-19/Montenegro/ChVir-1267392002/2020
 ATTAAAGGTTTA1- C241T C593T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_518868 MT920007
 2020-03-18 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T G14186T T18736C G18781A G19684T C24034T T26729C C27635T G28077C T28144C A29700G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_518875 MT920014
 2020-03-18 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T490A C3177T C8782T G14186T T18736C G18781A G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_518879 MT920018
 2020-03-18 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C3464A C8782T A17858G C18060T C22522S A23403G A24694T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_523939
 2020-03-18 2020-08-27
 Germany hCoV-19/Germany/NW-68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G17808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523979
 2020-03-18 2020-08-27
 Peru hCoV-19/Peru/ARE-INS-072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T G10265A C14408T A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_524645
 2020-03-18 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260C41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G19947T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525540
 2020-03-18 2020-08-31
 France hCoV-19/France/ARA10836/2020
 ATTAAA1- C241T G533T C3037T C14408T C15324T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_525541
 2020-03-18 2020-08-31
 France hCoV-19/France/ARA11167/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T G11083T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_525542
 2020-03-18 2020-08-31
 France hCoV-19/France/ARA11228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4647G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525620
 2020-03-18 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-21196-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T G14580T C15738T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_525621
 2020-03-18 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-21493-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_526799
 2020-03-18 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0578/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_526801
 2020-03-18 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G5542C C14408T A23403G G26063T C27046T GGG28881AAC A29871R AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_526803
 2020-03-18 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0582/2020
 ATTA1- C241T C1059T C3037T C10156T C14408T A23403G G25563T

EPI_ISL_526806
 2020-03-18 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T C1059T C3037T G8676T C14408T C20104T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_528200
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42196976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_528201
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42197004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7735T C14408T C15324T A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528202
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42197025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C5869T C14408T C15324T C21575T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528204
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42197035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C5869T C14408T C15324T C21575T A23403G C24198T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528206
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42197095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G5572T C8208T C14408T C15324T G20940T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528208
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/SO-UHB-42197247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C13957T C14408T C15324T G15982T T18436C A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528212
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42197274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528213
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42197347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7735T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528214
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42197488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C3264T C14408T C14757T C15324T C22458T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528215
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42197574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528216
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42197601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12076T T12739C C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528217
 2020-03-18 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42197732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528925
 2020-03-18 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE5268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C3037T C14408Y A23403G GGG28881AAC AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_530039
 2020-03-18 2020-09-10
 Spain hCoV-19/Spain/MD-LP110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16744A A20268G G21190A A23403G T26301G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530347
 2020-03-18 2020-09-11
 Czech Republic hCoV-19/Czech Republic/NRL_4038/20/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27247T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530350
 2020-03-18 2020-09-11
 Czech Republic hCoV-19/Czech Republic/NRL_5553/20/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535831
 2020-03-18 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G991T C3037T C14408T A23403G C25904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535840
 2020-03-18 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00225956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535850
 2020-03-18 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00226624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5730T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535851
 2020-03-18 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00226858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535858
 2020-03-18 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00227147/2020
 ATTAAA1- C241T G1186A C2416T C3037T C14408T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535862
 2020-03-18 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00227476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536527
 2020-03-18 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-130/2020
 AT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536539
 2020-03-18 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-144/2020
 ATTAAAG1- C5796T C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_536540
 2020-03-18 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-145/2020
 ATTAAAG1- C5796T C8782T T9477A C14805T G25979T T28144C C28657T C28863T A29890M

EPI_ISL_536541
 2020-03-18 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-146/2020
 ATTAAAG1- C5796T C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_536551
 2020-03-18 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-158/2020
 ATTAAAG1- C241T C3037T C14408T A20268G A23403G G24102K T24716Y C27689T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536554
 2020-03-18 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-161/2020
 ATTAAAG1- C241T C3037T G10265A C14408T G14829T A23403G GGG28881AAC

EPI_ISL_537507
 2020-03-18 2020-09-16
 United States hCoV-19/USA/CA-UCLA-180/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C10188T C14408T G18525T A23403G T24982C G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_537603
 2020-03-18 2020-09-16
 United States hCoV-19/USA/CA-UCLA-84/2020
 ATTAAAGGTTTA1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_538440
 2020-03-18 2020-09-17
 Singapore hCoV-19/Singapore/135nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539174
 2020-03-18 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539522
 2020-03-18 2020-09-18
 Spain hCoV-19/Spain/CE-ISCIII-204881/2020
 C241T C1059T C3037T A10991G T11033C C14408T A23403G G24368T G25563T

EPI_ISL_539781
 2020-03-18 2020-09-19
 Czech Republic hCoV-19/Czech Republic/NRL-3968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541970
 2020-03-18 2020-09-23
 Norway hCoV-19/Norway/01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G23607T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545707
 2020-03-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15407T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545714
 2020-03-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547447
 2020-03-18 2020-09-24
 Netherlands hCoV-19/Aruba/AW-RIVM-10114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547482
 2020-03-18 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560652
 2020-03-18 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T C11074T G11083T C14805T G26144T C29250T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560656
 2020-03-18 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T14646C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560658
 2020-03-18 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2305T G2891A A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560660
 2020-03-18 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568580
 2020-03-18 2020-10-02
 Thailand hCoV-19/Thailand/Bangkok-CONI-0215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T

GWHAMMF01000001
 2020-03-18 2020-05-28
 China SARS-CoV-2/human/CHN/Beijing_IME-BJ08/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G4255T G8653T C14408T A23403G A26507T A26530G G27746T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

GWHAORM01000001
 2020-03-18 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P6.2/2020
 C27389T

MT328032
 2020-03-18 2020-04-11
 Greece SARS-CoV-2/human/GRC/10/2020
 C241T C3037T C14408T C14786T T18126C A23403G GGG28881AAC

MT328033
 2020-03-18 2020-04-11
 Greece SARS-CoV-2/human/GRC/12/2020
 C241T C3037T C14408T A23403G C25771A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT328034
 2020-03-18 2020-04-11
 Greece SARS-CoV-2/human/GRC/16/2020
 C8782T C9430T T9477A C14805T A22151G G25979T T28144C C28657T C28863T AAAAAAAAAAAAAAAAAAA29885-

MT328035
 2020-03-18 2020-04-11
 Greece SARS-CoV-2/human/GRC/13/2020
 C241T C3037T C14408T A23403G GGG28881AAC C28887T

MT371571
 2020-03-18 2020-04-15
 Czech Republic SARS-CoV-2/human/CZE/CzechiaMotol_1968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT371574
 2020-03-18 2020-04-15
 Czech Republic SARS-CoV-2/human/CZE/CzechiaMotol_1967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT374114
 2020-03-18 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-18/2020
 AT1- C241T C3037T C14408T A23403G G25785T GGG28881AAC

MT374115
 2020-03-18 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-19/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T A29903-

MT374116
 2020-03-18 2020-04-22
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-20/2020
 AT1- C241T C3037T C14408T A23403G C25810T GGG28881AAC

MT459906
 2020-03-18 2020-05-11
 Greece SARS-CoV-2/human/GRC/45_35378/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT477840
 2020-03-18 2020-05-14
 United States SARS-CoV-2/human/USA/AK015/2020
 ATTAAAGGTTTA1- T2266C C6027T C7979M A10236G G11083T C14805T T17247C G26144T AAAAAAAAAAAAAA29890-

MT477841
 2020-03-18 2020-05-14
 United States SARS-CoV-2/human/USA/AK016/2020
 ATTAAAGGTTTAT1- T2266C C6027T A10236G G11083T C14805T T17247C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT509486
 2020-03-18 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT670017
 2020-03-18 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-26347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1319A C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706163
 2020-03-18 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6814C G11083T C14408T G22203T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706173
 2020-03-18 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706174
 2020-03-18 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A C18171A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706177
 2020-03-18 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6884T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706295
 2020-03-18 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT801001
 2020-03-18 2020-07-27
 Lebanon SARS-CoV-2/human/LBN/LB-R9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C313T C3037T C9474T C14408T A23403G GGG28881AAC

MT810084 MT598172
 2020-03-18 2020-06-11
 United States SARS-CoV-2/human/USA/MG0987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810554
 2020-03-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0418-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2018G C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810557
 2020-03-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0424-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2018G C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810570
 2020-03-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0444-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C5869T C6402T T14133C C14408T A20268G A23403G C27603T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT907517
 2020-03-18 2020-08-20
 Venezuela SARS-CoV-2/human/VEN/8LR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAA1- C241T C3037T T8336C T9357C C14408T A23403G T24736G A26434G GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

MW030197
 2020-03-18 2020-09-22
 Peru SARS-CoV-2/human/PER/covper054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030208
 2020-03-18 2020-09-22
 Peru SARS-CoV-2/human/PER/covper068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C5796T C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030209
 2020-03-18 2020-09-22
 Peru SARS-CoV-2/human/PER/covper069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C5796T C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030210
 2020-03-18 2020-09-22
 Peru SARS-CoV-2/human/PER/covper070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C5796T C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030218
 2020-03-18 2020-09-22
 Peru SARS-CoV-2/human/PER/covper082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTC1- C241T C3037T C14408T A20268G A23403G G24102K T24716Y C27689T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030221
 2020-03-18 2020-09-22
 Peru SARS-CoV-2/human/PER/covper085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T G10265A C14408T G14829T A23403G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013232
 2020-03-18 2020-06-01
 China hCoV-19/Guangzhou/ID068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3156T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013257
 2020-03-18 2020-06-01
 China hCoV-19/Guangzhou/ID048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1339K A1341M T1343K C6312A C9803T G11083T C13730T C23929T C28311T G28827A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417947
 2020-03-19 2020-03-27
 Democratic Republic of the Congo hCoV-19/DRC/94/2020
 ATT1- C241T C3037T C14408T C15324T A23403G C24023A GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_417948
 2020-03-19 2020-03-27
 Democratic Republic of the Congo hCoV-19/DRC/108/2020
 ATTA1- C241T C3037T C8293T C14408T A16455G T18488C A23403G T24739C A26530G CCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29802-

EPI_ISL_417971 MT334544
 2020-03-19 2020-03-27
 United States SARS-CoV-2/human/USA/UT-00028/2020
 C241T C1059T C3037T C14408T A23403G C24378T G25563T C27964T

EPI_ISL_417974 MT334546
 2020-03-19 2020-03-27
 United States SARS-CoV-2/human/USA/UT-00032/2020
 ATTA1- C241T C3037T C14408T C19328S A23403G

EPI_ISL_417976 MT334547
 2020-03-19 2020-03-27
 United States SARS-CoV-2/human/USA/UT-00033/2020
 C241T C1059T C3037T C6445T C14408T C17639T G22335T A23403G G25563T

EPI_ISL_418629
 2020-03-19 2020-03-30
 Belgium hCoV-19/Belgium/ULG-7773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3376C C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418634
 2020-03-19 2020-03-30
 Belgium hCoV-19/Belgium/ULG-8595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G21793T A23403G G28690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418640
 2020-03-19 2020-03-30
 Belgium hCoV-19/Belgium/ULG-8634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2773T C3037T C14408T G17193T C18348T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418646
 2020-03-19 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G C23679T G25563T G28857A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418807
 2020-03-19 2020-03-31
 Australia hCoV-19/Australia/QLDID927/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_418808
 2020-03-19 2020-03-31
 Australia hCoV-19/Australia/QLDID928/2020
 ATTAAAGGTTTATACCTTCCCAG1- T514C ATG1605- C5512T G19999T C29144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_419308 LC547530
 2020-03-19 2020-04-02
 Japan hCoV-19/Japan/P4-8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T G3025T C3037T C14408T C23248T A23403G C26642T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_419453
 2020-03-19 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-248B3/2020
 AT1- C241T T818Y C3037T C6151Y C6990T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419671
 2020-03-19 2020-04-03
 Austria hCoV-19/Austria/CeMM0018/2020
 C241T C3037T C9223Y C14408T A23403G C25702Y C27046T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_419672
 2020-03-19 2020-04-03
 Austria hCoV-19/Austria/CeMM0019/2020
 C241T C3037T C14408T T19839C A23403G C27393T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_419727 MT451026
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T A13951T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419876 MT451082
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC179/2020
 ATTAAAGGTTTATACCT1- -11075TTT G11083T C14805T T17247C A23080R G26144T

EPI_ISL_419877
 2020-03-19 2020-04-03
 Australia hCoV-19/Australia/VIC180/2020
 A1- C1912T

EPI_ISL_419880 MT451086
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC184/2020
 AT1- C241T C1059T C3037T C14408T C21711T A23403G G25563T

EPI_ISL_419881 MT451087
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC185/2020
 ATTAAAGGTTTA1- G204T C241T C1059T C3037T G8676T C14408T A23403G G25563T

EPI_ISL_419882 MT451088
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC186/2020
 ATTAAAGGTT1- G210T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_419883 MT451089
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC187/2020
 ATTA1- G210T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_419884 MT451090
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T A21267G G22335T C23929T C28311T

EPI_ISL_419885 MT451091
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C12741T C17747T A17858G C18060T C21642T A24694T T28144C

EPI_ISL_419886 MT451092
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419887 MT451093
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC191/2020
 A1- C241T C679T C3037T C14408T C16386T A23403G GGG28881AAC

EPI_ISL_419888 MT451094
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC192/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_419889 MT451095
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- G1440A G2891A C7011T

EPI_ISL_419890 MT451096
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC194/2020
 AT1- G11083T C14805T G24236T G25183T G26144T T28743C G28881A G29692T

EPI_ISL_419891 MT451097
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC195/2020
 ATTAAAGGTT1- C241T C3037T G4180A C14408T C17104T A20268G A23055M A23403G G29734C C29870A

EPI_ISL_419892 MT451098
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC196/2020
 ATTA1- C241T C2416T C3037T C14408T G20578T A23403G G25563T

EPI_ISL_419893 MT451099
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G10265A C14408T CA23054YM A23403G GGG28881AAC

EPI_ISL_419894 MT451100
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC198/2020
 ATTA1- C241T C3037T C14408T A23403G

EPI_ISL_419895 MT451101
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_419896 MT451102
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T T27546C

EPI_ISL_419897 MT451103
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC202/2020
 ATTAAAGGTTTATACC1- C241T C2416T C3037T C14408T G20578T A23403G G25563T

EPI_ISL_419898 MT451104
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC203/2020
 AT1- A2480G C2558T T10480C C11074T G11083T C14805T T26130C G26144T G27217T C27559T

EPI_ISL_419899 MT451105
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC204/2020
 ATTAAAGGT1- C8782T C17747T A17858G C18060T A24694T G25340A T28144C

EPI_ISL_419900 MT451106
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419902 MT451108
 2020-03-19 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC207/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_420049
 2020-03-19 2020-04-04
 France hCoV-19/France/HF2946/2020
 C241T C1059T C3037T C14408T A23403G G25563T A26459G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_420050
 2020-03-19 2020-04-04
 France hCoV-19/France/HF2948/2020
 C241T C2416T C3037T C14408T C18981T C19884T A23403G G25563T G27593T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420051
 2020-03-19 2020-04-04
 France hCoV-19/France/IDF2989/2020
 C241T C1059T C3037T A11356T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420073
 2020-03-19 2020-04-04
 Senegal hCoV-19/Senegal/382/2020
 C241T C2416T C3037T C14408T G22030T A23403G G25563T G26450T

EPI_ISL_420082
 2020-03-19 2020-04-05
 Taiwan hCoV-19/Taiwan/125/2020
 ATTAAA1- C241T C3037T C14408T A23403G A24862G G29862C G29864A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_420298
 2020-03-19 2020-04-06
 United States hCoV-19/USA/NY-NYUMC47/2020
 A2480G C2558T C6990T A9925T G11083T C14805T C17010A G20663A C21575T G26144T G27074A

EPI_ISL_420307
 2020-03-19 2020-04-06
 United States hCoV-19/USA/NY-NYUMC52/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29402T G29540A

EPI_ISL_420308
 2020-03-19 2020-04-06
 United States hCoV-19/USA/NY-NYUMC53/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_420309
 2020-03-19 2020-04-06
 United States hCoV-19/USA/NY-NYUMC54/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420364
 2020-03-19 2020-04-06
 Belgium hCoV-19/Belgium/HP-0319108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A14270C C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420365
 2020-03-19 2020-04-06
 Belgium hCoV-19/Belgium/OT-0319109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C20956T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420366
 2020-03-19 2020-04-06
 Belgium hCoV-19/Belgium/KKN-0319184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420368
 2020-03-19 2020-04-06
 Belgium hCoV-19/Belgium/CA-0319111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420369
 2020-03-19 2020-04-06
 Belgium hCoV-19/Belgium/SR-0319112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T3610C T10150C G11083T C14805T T17247C G25437T G26144T A29598G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420370
 2020-03-19 2020-04-06
 Belgium hCoV-19/Belgium/SC-0319113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11355T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420564
 2020-03-19 2020-04-06
 Italy hCoV-19/Italy/TE5472/2020
 C15Y C48M C241T C3037T G4255T C4668M T7396W C14408T A23403G A26530G AAAAA29899-

EPI_ISL_420565
 2020-03-19 2020-04-06
 Italy hCoV-19/Italy/TE5476/2020
 TTCG42GCAK C48M A55R C241T AC538WM C3037T CT3768YY A4221W G6364R T7396W A8203R TG8827WK C14408T A23403G T26712K GGG28881AAC AAAA29900-

EPI_ISL_420586
 2020-03-19 2020-04-06
 United States hCoV-19/USA/NY-NYUMC70/2020
 C241T C3037T C14408T A23403G

EPI_ISL_421279
 2020-03-19 2020-04-07
 United States hCoV-19/USA/IN-Lilly-IPB0170-4bc20/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_421281
 2020-03-19 2020-04-07
 United States hCoV-19/USA/IN-Lilly-IPB0170-4bc21/2020
 C241T C3037T C14408T G20397A A23403G

EPI_ISL_421301
 2020-03-19 2020-04-07
 United States hCoV-19/USA/WI-UW-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2695T A10323G G11083T C14805T T17247C G26144T G29262T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421305
 2020-03-19 2020-04-07
 United States hCoV-19/USA/WI-UW-47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T9697C T18765C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421315
 2020-03-19 2020-04-07
 United States hCoV-19/USA/WI-UW-57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421318
 2020-03-19 2020-04-07
 United States hCoV-19/USA/WI-UW-60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421327
 2020-03-19 2020-04-07
 United States hCoV-19/USA/WI-UW-69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421328
 2020-03-19 2020-04-07
 United States hCoV-19/USA/WI-UW-70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421335
 2020-03-19 2020-04-07
 United States hCoV-19/USA/WI-UW-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G558T C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421385 MT370912
 2020-03-19 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421386 MT370880
 2020-03-19 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C10369T C14408T C15324T T23284C A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421387 MT370917
 2020-03-19 2020-04-07
 United States SARS-CoV-2/human/USA/NY-PV08429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_421456
 2020-03-19 2020-04-08
 Portugal hCoV-19/Portugal/PT0053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C6636T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421458
 2020-03-19 2020-04-08
 Portugal hCoV-19/Portugal/PT0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C10582T C14408T G15327T A21817T A23403G G25563T C27942T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421465
 2020-03-19 2020-04-08
 Portugal hCoV-19/Portugal/PT0062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T G922A C3037T C14408T T18436C C21242T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421484
 2020-03-19 2020-04-08
 Portugal hCoV-19/Portugal/PT0081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421552
 2020-03-19 2020-04-08
 United States hCoV-19/USA/WY-WYPHL018/2020
 C8782T C17747T A17858G C18060T A21141G A24694T T28144C

EPI_ISL_421629 MT371026
 2020-03-19 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C18877T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_421632 MT370989
 2020-03-19 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T T28105C G29540A GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_421641
 2020-03-19 2020-04-09
 Taiwan hCoV-19/Taiwan/144/2020
 ATTA1- T10G T13A C33A C241T C3037T G11272T C14408T C14585T A23403G TT29845GA ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_422418
 2020-03-19 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU16/2020
 C241T G510A C3037T C4456T C8326T C14408T A20268G A23403G G29734C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422419
 2020-03-19 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU17/2020
 C241T C1059T A1123G C3037T T7217C C14408T C18568T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422420
 2020-03-19 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU19/2020
 C241T C3037T C14408T C14585T A23403G A25031W AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422421
 2020-03-19 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU20/2020
 C241T C635T C1059T C3037T C3743T T11522G C14408T A23403G G25563T C26256T C28603T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422422
 2020-03-19 2020-04-10
 Taiwan hCoV-19/Taiwan/NTU21/2020
 C241T C3037T C14408T C14585T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_422491 MT371030
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C3695T A4544T C14408T A20268G A23403G C29743T ACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29768-

EPI_ISL_422492 MT370965
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09116/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422494 MT370939
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422495 MT370944
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422497 MT370953
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T A4544T C14408T A20268G A23403G C29743T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422498 MT370981
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422499 MT370993
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422500 MT371020
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T C1059T C3037T C14408T A23403G G25563T G27593T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422501 MT371032
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_422502 MT370942
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_422503 MT370956
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T T28151C G29540A TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_422504 MT371010
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T T10831C C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422505 MT370958
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C8078T C14408T G18973T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422506 MT370975
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1594T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_422531 MT371012
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422533 MT371001
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422534 MT371005
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C1917T C3037T C14408T G20005A T21458C A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422536 MT371007
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422537 MT371037
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C13730T C14408T A23403G G25429T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422539 MT370966
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422540 MT370996
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09181/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422541 MT370940
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422542 MT370998
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422546 MT371038
 2020-03-19 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T G25740T C28332T A28848G TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_422647 LR877932
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/Limburg_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422679 LR877726
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C3037T C16762T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422680 LR877749
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422681 LR877750
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G19999T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422682 LR877745
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422684 LR877738
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422685 LR877763
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422686 LR877752
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422892 LR877944
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422893 LR877931
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T7878G C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422914 LR877739
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T10516C T13006C C14408T A23403G G25563T C25688T C26882T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422915 LR877740
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422916 LR877733
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T G28985T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422917 LR877737
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T G28985T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422918 LR877734
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12621T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422919 LR877765
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T670C ATG1605- T10830C C17410T C28744T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422920 LR877757
 2020-03-19 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423001 MT293196
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW432/2020
 ATTAAAGGTT1- A35T C37H C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAA29899-

EPI_ISL_423001 MT293196
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW432/2020
 ATTAAAGGTT1- A35T C37H C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAA29899-

EPI_ISL_423002 MT293197
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGC1- C241T C3037T C4809T C14408T C18877T A23403G G25563T AAA29901-

EPI_ISL_423002 MT293197
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGC1- C241T C3037T C4809T C14408T C18877T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_423003 MT293198
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW434/2020
 ATTAAAGG1- AACC34TTTA C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAA29890-

EPI_ISL_423003 MT293198
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW434/2020
 ATTAAAGG1- AACC34TTTA C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAA29890-

EPI_ISL_423004 MT293199
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCT1- C8782T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_423004 MT293199
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCT1- C8782T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_423005 MT293200
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW436/2020
 ATTAAAGGTTTATACCTTCCCAG1- AACC34TTTA G8602A C8782T C17747T A17858G C18060T G26152A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_423005 MT293200
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW436/2020
 ATTAAAGGTTTATACCTTCCCAG1- AACC34TTTA G8602A C8782T C17747T A17858G C18060T G26152A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_423006 MT293201
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_423006 MT293201
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_423007 MT293202
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW438/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C10623T C17747T A17858G C18060T T28144C -29904GA

EPI_ISL_423007 MT293202
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW438/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C10623T C17747T A17858G C18060T T28144C -29904GA

EPI_ISL_423011 MT293205
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW442/2020
 ATTAAAGGTTTATA1- CCCAGG19- CAAACCAACCAA28T C241T C1059T C3037T C14408T G15760A C18171A A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_423011 MT293205
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW442/2020
 ATTAAAGGTTTATA1- CCCAGG19- CAAACCAACCAA28T C241T C1059T C3037T C14408T G15760A C18171A A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_423012 MT293206
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAG1- AA263TG A266T T327C A1815G C8782T A12199G AG13512TT C17747T A17858G C18060T G20580A C21721T C26456T C27498T T28144C -29904AAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_423012 MT293206
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAG1- AA263TG A266T T327C A1815G C8782T A12199G AG13512TT C17747T A17858G C18060T G20580A C21721T C26456T C27498T T28144C -29904AAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_423013 MT293207
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34TWT C241T C3037T C14408T C23230T A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_423013 MT293207
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34TWT C241T C3037T C14408T C23230T A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_423014 MT293208
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW445/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T23010C T28144C -29904ANANANANANA

EPI_ISL_423014 MT293208
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW445/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T23010C T28144C -29904ANANANANANA

EPI_ISL_423015 MT293209
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C3037T C14408T C21742T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_423015 MT293209
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C3037T C14408T C21742T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_423016 MT293210
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW447/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_423016 MT293210
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW447/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_423017 MT293211
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- CC36TH C5784T C6723T C8782T C16716T C17747T A17858G C18060T C22281T G26730A T28144C AAAA29900-

EPI_ISL_423017 MT293211
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- CC36TH C5784T C6723T C8782T C16716T C17747T A17858G C18060T C22281T G26730A T28144C AAAA29900-

EPI_ISL_423018 MT293212
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW449/2020
 ATTAAAGGTTTATACC1- C19A A22T T25G C28T AACC34HTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAA29900-

EPI_ISL_423018 MT293212
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW449/2020
 ATTAAAGGTTTATACC1- C19A A22T T25G C28T AACC34HTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAA29900-

EPI_ISL_423019 MT293213
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW450/2020
 ATTAAAGGT1- A35H C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T AAAAAAA29897-

EPI_ISL_423019 MT293213
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW450/2020
 ATTAAAGGT1- A35H C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T AAAAAAA29897-

EPI_ISL_423020 MT293214
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C1059T A2018G C3037T T3628C C14408T A23403G C25549T G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_423020 MT293214
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C1059T A2018G C3037T T3628C C14408T A23403G C25549T G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_423021 MT293215
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW452/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AA34HT C37H C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_423021 MT293215
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW452/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AA34HT C37H C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_423022 MT293216
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW453/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AAC34TTT C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_423022 MT293216
 2020-03-19 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW453/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AAC34TTT C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_423052
 2020-03-19 2020-04-12
 United Kingdom hCoV-19/England/20134001904/2020
 A2480G C2558T G11083T C14805T T20123Y G26144T

EPI_ISL_423918
 2020-03-19 2020-04-12
 United Kingdom hCoV-19/England/20128000604/2020
 C6402T C8782T T9477A C11674T C14805T G25979T T28144C C28657T C28863T G29402T

EPI_ISL_423952
 2020-03-19 2020-04-12
 United Kingdom hCoV-19/England/20128036004/2020
 C241T C3037T C6363T C8982T C14408T A23403G A24880R G25429T C25916Y

EPI_ISL_424166 MT326174
 2020-03-19 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T AAAAAAAA29896-

EPI_ISL_424169 MT326177
 2020-03-19 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- TCAT221GTGA C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_424170 MT326178
 2020-03-19 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1595/2020
 C241T C1059T A2018G C3037T T3628C C14408T A23403G C25549T G25563T

EPI_ISL_424172 MT326180
 2020-03-19 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C222- C241T C1059T C3037T C6040T G7675T C10626T C14408T A23403G G25563T A29869T -29904ANANANANANANA

EPI_ISL_424211 MT326136
 2020-03-19 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A G29868D

EPI_ISL_424212 MT326137
 2020-03-19 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1715/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G28827T G29553A AAAAAAAAAA29894-

EPI_ISL_424250 MT326086
 2020-03-19 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1785/2020
 ATTAAAGGTTTATA1- AACC34HTTH A6821G C8092T C8782T C17747T A17858G C18060T C26037T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424379
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/355/2020
 T514C ATG1605-

EPI_ISL_424380
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/356/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424381
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/357/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424382
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/358/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424383
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/359/2020
 C241T C3037T C5730T G10870T C14408T G15850T A23403G G23587T GGG28881AAC

EPI_ISL_424384
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/360/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424385
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/361/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_424389
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/365/2020
 C241T C3037T A8072G C14408T A23403G GGG28881AAC

EPI_ISL_424390
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/366/2020
 C241T C3037T C14408T A23403G G27430A GGG28881AAC

EPI_ISL_424391
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/367/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_424392
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/368/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424393
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/369/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424396
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/372/2020
 C1218T C26907T G27806T G29711T

EPI_ISL_424398
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/374/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28209T

EPI_ISL_424400
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/376/2020
 C241T C1059T C1302T C2939T C3037T T11191G C14408T A23403G G25563T

EPI_ISL_424401
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/377/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424402
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/378/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_424404
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/380/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424406
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/382/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424410
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/386/2020
 C241T C3037T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424411
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/387/2020
 C241T C3037T C3253T G4280A C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424412
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/388/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424413
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/389/2020
 C241T C1059T A2182G C3037T TGGTTG11271- C14408T A23403G G25563T

EPI_ISL_424414
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/390/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424415
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/391/2020
 C241T C913T C3037T C14408T A23403G GGG28881AAC -29686C

EPI_ISL_424419
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/395/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424422
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/398/2020
 C241T C3037T C14408T C15324T C21575T A23403G

EPI_ISL_424423
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/399/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424424
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/400/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_424425
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/401/2020
 C241T C2455T C3037T A4060G C10450T C14408T A23403G

EPI_ISL_424426
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/402/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424429
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/405/2020
 C1457T C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_424434
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/410/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424435
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/411/2020
 A2480G C2558T G11083T C14805T A16410G G26144T

EPI_ISL_424436
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/412/2020
 C8782T T9445C G11083T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_424437
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/413/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424438
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/414/2020
 C5142T G11083T C14805T G15380T T17247C G26144T G29260T

EPI_ISL_424439
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/415/2020
 G1440A G2891A A4140G

EPI_ISL_424440
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/416/2020
 C241T C3037T A10323G C14408T A20268G C21359T A23403G C25603T

EPI_ISL_424441
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/417/2020
 C5142T G11083T C14805T T17247C C25002T G26144T

EPI_ISL_424442
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/418/2020
 C241T C3037T C13862T C14408T A23403G C28836T

EPI_ISL_424443
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/419/2020
 A30T C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T G28812T GGG28881AAC

EPI_ISL_424445
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/421/2020
 C5142T G11083T C14805T C15240T T17247C G26144T

EPI_ISL_424447
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/423/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424476
 2020-03-19 2020-04-13
 Iceland hCoV-19/Iceland/452/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424641
 2020-03-19 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10080/2020
 A1515G C9223T C9438T G11083T C14805T T17247C G26144T

EPI_ISL_425139 MT582456
 2020-03-19 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-44/2020
 C241T T3011C C3037T T11182C C14408T A23403G

EPI_ISL_425199
 2020-03-19 2020-04-14
 Spain hCoV-19/Spain/Valencia75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8983A C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425201
 2020-03-19 2020-04-14
 Spain hCoV-19/Spain/Valencia77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425292
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74465/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425293
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74474/2020
 C583T A700G A2480G C2558T C7279T G11083T C14805T A15405G G26144T C27331T

EPI_ISL_425295
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74492/2020
 C241T C2416T C3037T C14408T G20578T A23403G G25563T

EPI_ISL_425361
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74C5E/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425373
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74D5B/2020
 C241T C3037T C14408T A23403G G25793T T27299C GGG28881AAC T29148C

EPI_ISL_425374
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74D6A/2020
 C241T C3037T C14408T C18568T A23403G A26530G

EPI_ISL_425496
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E0D4/2020
 G431A ATG1605- C20270T G27214T A29683T

EPI_ISL_425497
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E0E3/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425498
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E0F2/2020
 ATG1605- G2051A T4949C T10836C C16887T

EPI_ISL_425527
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E308/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425728
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425733
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425735
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C26781T C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425745
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A27759G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425750
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR235/2020
 C241T C3037T C14408T A20268G A23403G C29640T

EPI_ISL_425755
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR268/2020
 ATG1605- C6031T C6696T A9737G C11001T C29095T

EPI_ISL_425863
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB063/2020
 A18640T C24198T

EPI_ISL_425866
 2020-03-19 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB067/2020
 C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T C26461T

EPI_ISL_426313
 2020-03-19 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-22503-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426315
 2020-03-19 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-22874-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A3388G C14408T C16289T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426358
 2020-03-19 2020-04-16
 Czech Republic hCoV-19/Czech Republic/Seq5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A21643C C22432T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426436
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0418/2020
 C3784T C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426437
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0422/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426438
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0427/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426439
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0428/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426440
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0429/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426441
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0432/2020
 C8782T C17747T A17858G C18060T G23120T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426442
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0434/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426443
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0440/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426444
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0441/2020
 C8782T T11320C G17302T C17747T A17858G T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426445
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0442/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426446
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0447/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426447
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0448/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426449
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0478/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426450
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0480/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426451
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0484/2020
 C8782T T11320C C17747T A17858G C18060T T28144C C28873T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426452
 2020-03-19 2020-04-16
 United States hCoV-19/USA/WA_0711/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426511
 2020-03-19 2020-04-17
 United States hCoV-19/USA/AZ-TG268770/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T T27919C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426525
 2020-03-19 2020-04-17
 United States hCoV-19/USA/AZ-TG269440/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28621A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426538
 2020-03-19 2020-04-17
 United States hCoV-19/USA/AZ-TG271856/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426643 MT451225
 2020-03-19 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC334/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_427704
 2020-03-19 2020-04-19
 Australia hCoV-19/Australia/NSW76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2558T G11083T C14805T G26144T ATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29677-

EPI_ISL_428264
 2020-03-19 2020-04-20
 United States hCoV-19/USA/WI-UW-168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428265
 2020-03-19 2020-04-20
 United States hCoV-19/USA/WI-UW-169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428266
 2020-03-19 2020-04-20
 United States hCoV-19/USA/WI-UW-170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428267
 2020-03-19 2020-04-20
 United States hCoV-19/USA/WI-UW-171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428268
 2020-03-19 2020-04-20
 United States hCoV-19/USA/WI-UW-172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C18877T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428672 MT371049
 2020-03-19 2020-04-21
 Sri Lanka SARS-CoV-2/human/LKA/COV91/2020
 C241T C3037T G4201T C14408T A23403G C26527T

EPI_ISL_428718
 2020-03-19 2020-04-21
 Turkey hCoV-19/Turkey/HSGM-5770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T G14122T G28878A G29742T

EPI_ISL_428872
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Moscow-71605/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_428873
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Sverdlovsk-71904/2020
 C241T C1059T C3037T G5432T C14408T G20709T A23403G G25563T

EPI_ISL_428876
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Moscow-71604/2020
 A187G C241T C3037T G7798T C9246T C14408T A23403G

EPI_ISL_428877
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Moscow-71602/2020
 C241T C635T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428879
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Sverdlovsk-71905/2020
 C241T C2933T C3037T G4255T C14408T G14511T G16935T A23403G A26530G

EPI_ISL_428880
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Khabarovsk-71403/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_428890
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Sverdlovsk-71903/2020
 C241T C3037T C14408T C15324T A23403G G28374A C29171T

EPI_ISL_428921
 2020-03-19 2020-04-22
 Russia hCoV-19/Russia/Tver-72601/2020
 C241T C3037T C14408T C16750T A23403G

EPI_ISL_429200
 2020-03-19 2020-04-23
 Switzerland hCoV-19/Switzerland/GE5737/2020
 ATTAAAG1- C241T C3037T C14408T G16912T T19839C A23403G GGG28881AAC G29751A

EPI_ISL_429718
 2020-03-19 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS1995247/2020
 C241T C3037T C3261T C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_429724
 2020-03-19 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS9984061/2020
 C241T C3037T C3619T C14408T C15324T A20374G A23403G C27276T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_430007 MT811558
 2020-03-19 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0049-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C900T C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430011 MT811561
 2020-03-19 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0053-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A7479G G11083T C14805T T17247C C25572T G26144T C28887T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430210 MT632515
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S172/2020
 C7564T C8782T T11320C C17747T A17858G C18060T

EPI_ISL_430212 MT632556
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S174/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430213 MT632578
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S175/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430214 MT632573
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S176/2020
 C8782T C17747T A17858G C18060T G23120T T28144C

EPI_ISL_430215 MT632557
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S177/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430219 MT632620
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S181/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430221 MT632574
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S183/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430222 MT632594
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S184/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430223 MT632550
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S185/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430231 MT632538
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S193/2020
 C8782T G11083T C17747T A17858G C18060T T28144C C29733T

EPI_ISL_430248 MT632551
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S210/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430250 MT632554
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S212/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430259 MT632584
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S221/2020
 C8782T C17747T A17858G C18060T G23120T T28144C

EPI_ISL_430262 MT632539
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S224/2020
 C8782T T11320C C17747T A17858G C18060T T28144C C28873T

EPI_ISL_430267 MT632572
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S229/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430268 MT632561
 2020-03-19 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S230/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_431015
 2020-03-19 2020-04-29
 United States hCoV-19/USA/AK-PHL013/2020
 ATTAAAGGTTTA1- C241T C3037T C6504T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_431783
 2020-03-19 2020-04-29
 China hCoV-19/Fujian/IM3520016T/2020
 ATTAAAGGTTTATACC1- A3531G C6312A A10508G G11083T C13730T C23929T C28311T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_434470
 2020-03-19 2020-04-29
 Greece hCoV-19/Greece/155/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434481
 2020-03-19 2020-04-29
 Greece hCoV-19/Greece/146/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- GTTATG515- A2480G C2558T G11083T C14805T G26144T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434586
 2020-03-19 2020-04-30
 United States hCoV-19/USA/MD-HP00036/2020
 C241T C1059T C3037T G11083T C14408T G15594A A23403G G25563T

EPI_ISL_434638
 2020-03-19 2020-04-30
 United States hCoV-19/USA/MD-HP00041/2020
 C241T C1059T C3037T C14408T A23403G G25563T T28393C

EPI_ISL_434785
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH076/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_434787
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH078/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434788
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH079/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434800
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH095/2020
 C241T C3037T C14408T G15243T A23403G

EPI_ISL_434801
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH096/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434803
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH098/2020
 C241T C3037T C14408T A23403G C26947T T27299C GGG28881AAC T29148C

EPI_ISL_434805
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH100/2020
 C241T C3037T A10840G C14408T G15243T A23403G

EPI_ISL_434808
 2020-03-19 2020-05-01
 United States hCoV-19/USA/TX-HMH103/2020
 C241T C3037T C14408T G15243T A23403G

EPI_ISL_435282
 2020-03-19 2020-05-04
 Indonesia hCoV-19/Indonesia/JKT-EIJK0317/2020
 A1C T3C A1646G C14636T A29872G A29874C AAA29876TCC -29881ATTTC A29884G AA29886TC -29890GTCATTTTGCTG A29892T AA29895GC A29898T AAA29900TTG

EPI_ISL_435425
 2020-03-19 2020-05-04
 Hungary hCoV-19/Hungary/SRC-1788lc/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_435670
 2020-03-19 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC191/2020
 

EPI_ISL_436077 MT434808
 2020-03-19 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0982NYC/2020
 C241T C1059T C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436078 MT434809
 2020-03-19 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0983NYC/2020
 C241T C1059T C4113T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436079 MT434817
 2020-03-19 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV0985NYC/2020
 C241T AAGTCATTT686- C1059T G2808A C14408T A23403G G25563T A26433G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436082 MT434812
 2020-03-19 2020-05-05
 United States SARS-CoV-2/human/USA/NY-CDC-SURV1000NYC/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436100
 2020-03-19 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-15/2020
 A1C TAAAG3CTTCC T9A T11C C241T C3037T C14408T A20268G A23403G G29473A G29734C -29898AAAAATTTTAAAAAAAAAAAAAAAAAAAAAAAAATT

EPI_ISL_436101
 2020-03-19 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-16/2020
 C6695A C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_436102
 2020-03-19 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-17/2020
 T5409A G6865T G13627T C14805T C15540T G22361T G25302T G25690T C25692A G26144T A28338G A29827G -29900AAACAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAACAAAAC

EPI_ISL_436245
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G C23114T A23403G G29734C C29802T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436246
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C2232T C2508T C11074T G11083T T15888C G26144T C28511A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436247
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A17202G A20268G A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436248
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C26088T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436249
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C7318T C14408T G23009T A23403G C26907A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436250
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G C21205A A23403G G29734C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_436251
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3242T C14408T A20268G A23403G G24075T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436252
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1087G G1598A C3037T T5124G C12970T C14408T A20268G G21220T A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436255
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C7318T C14408T G23009T A23403G C26907A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436271
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14214T C14408T A23403G C29144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436272
 2020-03-19 2020-05-06
 Spain hCoV-19/Spain/Valencia177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T G19542T A20268G A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_436500
 2020-03-19 2020-05-06
 United States hCoV-19/USA/PA-MGSC52-05/2020
 C241T C3037T C14408T G20679T A23403G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436718
 2020-03-19 2020-05-07
 Italy hCoV-19/Italy/TE5473/2020
 T54G TT77KY A81W A113R C241T AC538WM C3037T G4196S C4668M T7396W TG8827WK C14408T C22277M A23403G C27046Y C27335Y GGG28881AAC AA29902-

EPI_ISL_436825 MT439256
 2020-03-19 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436827 MT439251
 2020-03-19 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C26801G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_437255
 2020-03-19 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0056/2020
 C241T C1059T C3037T C14408T C15857T A20334G A23403G G25563T

EPI_ISL_437318
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1444/2020
 ATTAAA1- C884T G1397A T5182C C5477T C5736T C6402T G8653T G11083T T28688C G29742T

EPI_ISL_437319
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1490/2020
 ATTAAA1- C228T G1397A G9479T A9514G G11083T G19285A C21789T C26549T G26720C T28688C T28835C G29742T AAAAAA29898-

EPI_ISL_437320
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1492/2020
 ATTAAA1- C228T G1397A G9479T A9514G G11083T C26549T G26720C T28688C T28835C G29742T

EPI_ISL_437321
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1497/2020
 ATTAAA1- C228T G1397A G9479T A9514G G11083T C26549T G26720C C27573T T28688C T28835C G29742T AAAAAAA29897-

EPI_ISL_437322
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1009/2020
 ATTAAA1- C241T C884T G1397A G8653T C10702T G11083T A22964G C26549T T26551C T28688C G29742T AAAAA29899-

EPI_ISL_437323
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1481/2020
 ATTAAA1- C241T C884T G1397A G8653T C10702T G11083T A22964G C26549T T28688C G29742T AAAAAAAAAAA29893-

EPI_ISL_437324
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1476/2020
 ATTAAA1- C228Y C884T G1397A G8653T C10702T G11083T A22964G C26549T T26551C T28688C G29742T AAA29901-

EPI_ISL_437325
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1495/2020
 ATTAAA1- C241T G1397A C5736T G9479T A9514G G11083T C21789T G26720C T28688C T28835C G29742T AAAAAAAAA29895-

EPI_ISL_437326
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1432/2020
 ATTAAA1- C241T C3037T C5736T C14408T C18877T C22444T A23403G G25563T C26256T C28854T AAAAAAAA29896-

EPI_ISL_437327
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1458/2020
 ATTAAA1- C241T G1397A G9479T A9514G G11083T G26720C T28688C T28835C G29742T AAAAA29899-

EPI_ISL_437328
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-7668/2020
 ATTAAA1- C241T C1825T C2113T C3037T C5736Y C7765T C14408T C17690T C18877T A23403G G25563T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_437329
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-6204/2020
 ATTAAA1- C228T C5736T G9479T A9514G C13476T C18877T G26720C AAAAAAAAAAAAAA29890-

EPI_ISL_437330
 2020-03-19 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1452/2020
 ATTAAA1- C241T C3037T C5826A C14408T C18877T A23403G G25563T C26549T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_437554
 2020-03-19 2020-05-11
 United States hCoV-19/USA/CA-SR0258/2020
 C241T C1059T C1887T C3037T C14408T A23403G G25563T C26873T

EPI_ISL_437600
 2020-03-19 2020-05-11
 United States hCoV-19/USA/CA-SR0177/2020
 C241T C3037T C8389T C14408T A23403G G25563T C29870A

EPI_ISL_437603 MT447175
 2020-03-19 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI206587-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437892 MT459894
 2020-03-19 2020-05-11
 Greece SARS-CoV-2/human/GRC/226_35576/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14267T C14805T A16095G G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437916
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0026/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437963
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0102/2020
 C241T C3037T C4068T C14408T T22521K A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437964
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0103/2020
 C241T C3037T C3373A G11516A C14408T T22521K A23403G G25269T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437965
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0104/2020
 C241T C1059T C3037T C14408T C15026T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438066
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0235/2020
 C241T C1387T C3037T C14408T T22521K A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438068
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0238/2020
 C241T C3037T G11464A G13982T C14408T T22521K A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438069
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0239/2020
 C241T G2809T C3037T G12832A C14408T C21846T T22521K A23403G GGG28881AAC A29865R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438120
 2020-03-19 2020-05-12
 Austria hCoV-19/Austria/CeMM0357/2020
 C241T C3037T C14408T T22521K A23403G C24621T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438889
 2020-03-19 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13835T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438913
 2020-03-19 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_441415
 2020-03-19 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- ATG1605- A1815R C6696T C11001T T22729C C29870A

EPI_ISL_443216
 2020-03-19 2020-05-12
 Singapore hCoV-19/Singapore/124/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443295
 2020-03-19 2020-05-12
 France hCoV-19/France/IDF5847/2020
 C241T C1059T C3037T C6031T G11083T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_443296
 2020-03-19 2020-05-12
 France hCoV-19/France/IDF5848/2020
 C241T C1059T C3037T C8733T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_444571
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM079/2020
 C241T C3037T G3871T C14408T A23403G

EPI_ISL_444573
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM082/2020
 C66T T490A C3177T C8782T T18736C G19684T T21698G C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_444574
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM083/2020
 C241T C3037T G3871T C14408T C19862T A23403G

EPI_ISL_444575
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM084/2020
 A2817C G5017A C26902A

EPI_ISL_444576
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM085/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444577
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM087/2020
 T490A C3177T C8782T T18736C G19684T T21698G C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_444578
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM088/2020
 C241T C1059T C1427T C3037T C5183T C14408T A23403G G25563T

EPI_ISL_444579
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM089/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_444580
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM090/2020
 C241T C3037T C11704T C14408T A20268G A23403G

EPI_ISL_444583
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM095/2020
 C1059T C3037T C3177T C8782T C14408T C24034T G25563T C27635T T28144C A29567C

EPI_ISL_444599
 2020-03-19 2020-05-14
 United States hCoV-19/USA/IL-NM0116/2020
 C241T C3037T C14408T T15354C C18877T A23403G G25563T

EPI_ISL_444888
 2020-03-19 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-751/2020
 C241T C1059T G1729A C3037T C11674T C14408T G15327A A23403G G25563T C29200T

EPI_ISL_444896
 2020-03-19 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-769/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444900
 2020-03-19 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-775/2020
 C241T C1059T C3037T G3685T T8788C C14408T G21624T A23403G G25563T G26951A C29272T

EPI_ISL_444901
 2020-03-19 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-779/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444902
 2020-03-19 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-780/2020
 C241T C1059T C3037T C3923T C12781T C14408T C15842A A23403G G25563T

EPI_ISL_445282
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_4/2020
 A1T C241T C3037T C14408T C15324T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_445283
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_5/2020
 A1T T3A A5T C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_445284
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_6/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_445286
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Valparaiso_3/2020
 A1- T3A A5T C241T C1059T C3037T T10339C C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_445287
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Valparaiso_4/2020
 A1T T3A A5T C241T C3037T C14408T A23403G A29683- -TGTG29839CAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA TTTT29845AAAA T29851A GCTTCTT29853AAAAAAA GG29861AA G29864A TG29867AA C29870A

EPI_ISL_445315
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Santiago_36/2020
 ATTAAA1- C241T C3037T G10265A A12506R C14408T A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445318
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Santiago_39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- G11083T A12506R C14805T T17247C G26144T CA29838TG GTG29841- A29844C T29846C ATAG29850TACA T29855A T29859G G29861C AGAAT29863CTGCC A29871G AA29873CT AAAA29876GTCG AAAA29881GTGT A29886G AAAAAAAAAAAAAAAA29888TCTCGGTGG

EPI_ISL_445324
 2020-03-19 2020-05-15
 Chile hCoV-19/Chile/Santiago_45/2020
 -A3TCAAGGAGGAGTTAGATAAATATTTTAAGAATCATACATCACCAGATGTTGATTTAGGG C241T C3037T C14408T A20268G A23403G A29839C GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_447072 MT506541
 2020-03-19 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20274/2020
 C241T C1059T C3037T C14177T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_447173 MT506680
 2020-03-19 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20202/2020
 T490A G922A C3177T C8782T T18736C C19118Y A22003G C24034T T26729C G28077C T28144C A29700G

EPI_ISL_447178 MT506660
 2020-03-19 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20207/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25976A

EPI_ISL_447179 MT506659
 2020-03-19 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20208/2020
 A97G C241T C1059T C3037T A5011M C14408T A23403G G25563T A29903-

EPI_ISL_447221 MT506654
 2020-03-19 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20251/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27005T

EPI_ISL_447323
 2020-03-19 2020-05-17
 Israel hCoV-19/Israel/51140539/2020
 C241T C3037T C7834T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447615
 2020-03-19 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU18/2020
 C8782T A12787G C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_450055
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1170T C3037T C14408T A23403G G25563T G27478A GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450056
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450058
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1594T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450059
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- G11083T C14805T T17247C G26144T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450060
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_450061
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_450062
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A20755C A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450063
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C1625T G11083T C14805T T17247C G26144T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450064
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G C23453T G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450065
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450066
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C14408T A23403G G25563T C28674T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450067
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T C14676T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450068
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T C21762T A23403G G25563T C29640T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450069
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450070
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C28836T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450072
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_450074
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T A6324G C11916T G13993T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450075
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C8655T C14408T C16580T G18984T A23403G G25563T TGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29772-

EPI_ISL_450076
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C8655T C14408T C16580T G18984T A23403G G25563T AACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29767-

EPI_ISL_450077
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_450079
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T G15760A A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450080
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T G15760A G21800A A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450081
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T A2018G C3037T C14408T T21995C A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450082
 2020-03-19 2020-05-19
 United States hCoV-19/USA/NY-PV09401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450124
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450125
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C3037T C14408T A23403G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450126
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C2676T C8782T A22606T C25511T T28144C G28878A G29742A ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_450127
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450128
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450129
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G4255T C14408T T16456G C20051T A23403G A26530G GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450130
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450131
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C5512T C10851T C14408T A23403G G25563T ATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTCAAGAACTTTACTCTCCAATTT27579- AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450132
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C12488T C14408T A23403G G25563T A28482G C29421T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450133
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450134
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C25688A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450135
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C3037T G11083T C11916T T17137A C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450136
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G11083T C14805T T17247C G26144T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450137
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T C16376T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450138
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NJ-PV09465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450139
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- T490A C3177T C8782T T18736C G19684T C24034T C26642A T26729C G26840T C27635T G28077C T28144C A29700G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450140
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T G2281A C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450141
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T A2018G C3037T C14408T T21995C A23403G G25563T GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_450142
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450143
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T G15760A A23403G G25563T C29409T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450144
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NY-PV09472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T C17747T A17858G C18060T T28144C C28708T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450145
 2020-03-19 2020-05-20
 United States hCoV-19/USA/NJ-PV09473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450194
 2020-03-19 2020-05-20
 Australia hCoV-19/Australia/SAP036/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_450236
 2020-03-19 2020-05-20
 United States hCoV-19/USA/CA-UCSF-UC44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T C29614T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_450237
 2020-03-19 2020-05-20
 United States hCoV-19/USA/CA-UCSF-UC45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11674T C14408T A23403G C27046T GGG28881AAC TACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29760-

EPI_ISL_450413
 2020-03-19 2020-05-04
 Germany hCoV-19/Germany/HH-1/2020
 G160A C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_450471 MT499197
 2020-03-19 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1222/2020
 ATTAAAGGTTTA1- C16887T C17634A AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_450472 MT499198
 2020-03-19 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1223/2020
 A1- G1467A A13419T C26032T C27131T G29711T

EPI_ISL_450475 MT499201
 2020-03-19 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1226/2020
 G29711T

EPI_ISL_450835
 2020-03-19 2020-05-22
 Sweden hCoV-19/Sweden/20-08352/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_452026
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-150/2020
 C241T C683T C1059T C3037T C12781T C14408T C15842A G22103C A23403G G25563T C27741T

EPI_ISL_452027
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-151/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452028
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-153/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_452029
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-154/2020
 C241T C1059T C3037T C14408T G19086T A23403G G25563T

EPI_ISL_452030
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-155/2020
 T99C C241T C1059T C3037T C14408T A23403G G25563T C29719T

EPI_ISL_452031
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-156/2020
 C241T C3037T C14408T A23403G

EPI_ISL_452032
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-157/2020
 C241T C1059T C3037T C6539T C14408T A23403G G25563T

EPI_ISL_452033
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-158/2020
 C241T C3037T C14408T C18744T A20268G A23403G

EPI_ISL_452102
 2020-03-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-SSI-766/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29200T

EPI_ISL_452305
 2020-03-19 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20431/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_452325
 2020-03-19 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20451/2020
 T490A G922A C3177T C8782T T18736C A22003G C24034T T26729C G28077C T28144C A29700G

EPI_ISL_452326
 2020-03-19 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20452/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452334
 2020-03-19 2020-05-27
 China hCoV-19/Beijing/DT-travelIT05/2020
 C241T C4886T T4932C A26170T C27094T GGG28881AAC

EPI_ISL_452338
 2020-03-19 2020-05-27
 China hCoV-19/Beijing/DT-travelUSA02/2020
 C241T C1059T C3037T T8022G C12400T C14408T C19975T A23403G G25563T

EPI_ISL_452340
 2020-03-19 2020-05-27
 China hCoV-19/Beijing/DT-travelUSA03/2020
 C241T C3037T G12769T A23403G C28253T G28262T

EPI_ISL_452346
 2020-03-19 2020-05-27
 China hCoV-19/Beijing/DT-travelES04/2020
 C241T C3037T T8022G C14408T A20268G A23403G AG24389CC G29473A G29734C

EPI_ISL_452349
 2020-03-19 2020-05-27
 China hCoV-19/Beijing/DT-travelHU01/2020
 C241T G2229A C3037T T8022G C14408T A23403G AG24389CC A24950T GGG28881AAC

EPI_ISL_454066
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454072
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T A7025G T13006C C14408T G17302T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454074
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454076
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454077
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454078
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C10798T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454080
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454081
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T C14408T A23403G G24077T C29555T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454082
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G9805T C14408T A23403G G25552T GGG28881AAC TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_454083
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4162T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454087
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A19630C A20268G A23403G C25083T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454091
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T T2482C C3037T T11205G C14408T A20268G A23403G G29734C CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454230
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454233
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454234
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454235
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T A19459G G26144T A29684G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454318
 2020-03-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454607 MT533204
 2020-03-19 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A2480G C2558T T6746C A9048G G11083T C14805T G26144T G28857R C29686T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_454608 MT533205
 2020-03-19 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C11224T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_454957
 2020-03-19 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-208/2020
 A28356G C28441A

EPI_ISL_454958
 2020-03-19 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-209/2020
 T25382C A28356G

EPI_ISL_454959
 2020-03-19 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-210/2020
 GCACCTCATGGTCATGTTATGGTTGAGCTGGTA500- G800T

EPI_ISL_454961
 2020-03-19 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-212/2020
 T240C G2458T G26144T

EPI_ISL_454966
 2020-03-19 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-221/2020
 CCGATACAAGCCTCACTCCCTTTCGGATGGCTTATTGTTGGCGTTGCACTTCTTGCTGTTTT25498- C26571T G26865-

EPI_ISL_455210
 2020-03-19 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455390
 2020-03-19 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-218/2020
 G15538A A16445- A17423G

EPI_ISL_455602
 2020-03-19 2020-06-01
 Australia hCoV-19/Australia/VPRL010/2020
 C1943T A5410G C6312A G11083T C13730T G19891T C23929T C28311T C29085T

EPI_ISL_455698
 2020-03-19 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1226/2020
 C241T C3037T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_456151
 2020-03-19 2020-06-02
 Colombia hCoV-19/Colombia/INS-82320/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456171
 2020-03-19 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0933/2020
 C241T C3037T C14408T A23403G

EPI_ISL_456181
 2020-03-19 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1004/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_456191
 2020-03-19 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1110/2020
 C241T C3037T G9584T C14408T A23403G C28214A T28216A

EPI_ISL_456210
 2020-03-19 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1286/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_457598
 2020-03-19 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C33D3/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457795 MT646068
 2020-03-19 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00051/2020
 C241T C1059T C3037T C14408T A15325G A23403G G25563T

EPI_ISL_457800 MT646072
 2020-03-19 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00058/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_457813 MT646083
 2020-03-19 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00120/2020
 T490A C3177T C6040T C8782T C8950T G12478A G18318T T18736C C24034T C24382G T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_458229
 2020-03-19 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0319259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458235
 2020-03-19 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0319265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460182 MT520257
 2020-03-19 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T G28975T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460275 MT520350
 2020-03-19 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460460 MT520535
 2020-03-19 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C2416T C3037T C12789T C14408T A23403G G25563T G26233T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460656
 2020-03-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C900T C1594T C3037T C11109T C14408T G17019T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460696
 2020-03-19 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460716
 2020-03-19 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462277
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/159/2020
 C1376Y AAAAAAAAAAAA29892-

EPI_ISL_462278
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/160/2020
 A2480G C2558T A5939R G6373R G11083T C14805T G15025K A23526G G26144K G29711K C29784Y CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_462279
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/161/2020
 A2480G C2558T G11083T C14805T A23526G G26144T C29784T AAAAAAAAAAAA29892-

EPI_ISL_462280
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/162/2020
 C228T G1397A G9479T A9514G G11083K G26720C T28688C T28835C G29742T AAAAAAAAAAAAAA29890-

EPI_ISL_462281
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/163/2020
 C6310A C6312A G11083T C13072Y C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462282
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/164/2020
 C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_462285
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/167/2020
 C14636T AAAAAAAAAAAA29892-

EPI_ISL_462290
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/172/2020
 C241T C3037T C14408T A20268G A21532W A23403G AAAAAAAAAAAA29892-

EPI_ISL_462291
 2020-03-19 2020-06-08
 Singapore hCoV-19/Singapore/173/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_462451
 2020-03-19 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7343/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462452
 2020-03-19 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7344/2020
 ATTAAAGGTTTAT1- C241T C3037T C10336T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463991
 2020-03-19 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S63/2020
 ATTAAAGGTTTATACCT1- C241T C2416T C2919T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_463994
 2020-03-19 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25217T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_464167 MT594109
 2020-03-19 2020-06-11
 United States SARS-CoV-2/human/USA/VI-CDC-3638/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_467093
 2020-03-19 2020-06-12
 Spain hCoV-19/Spain/COV001514/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467096
 2020-03-19 2020-06-12
 Spain hCoV-19/Spain/COV001431/2020
 C8782T T9477A C14805T G25954T G25979T T28144C C28657T C28863T C29870A

EPI_ISL_467146
 2020-03-19 2020-06-12
 Spain hCoV-19/Spain/COV001459/2020
 C6099T C8782T T9477A C14805T C22227T G25979T T28144C C28657T C28863T

EPI_ISL_467150
 2020-03-19 2020-06-12
 Spain hCoV-19/Spain/COV001499/2020
 A5053G A8148G C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467157
 2020-03-19 2020-06-12
 Spain hCoV-19/Spain/COV001498/2020
 C241T C3037T G3875R C14408T G15438T A20268G A23403G G25049T

EPI_ISL_467162
 2020-03-19 2020-06-12
 Spain hCoV-19/Spain/COV001485/2020
 C4012T C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467177
 2020-03-19 2020-06-12
 Spain hCoV-19/Spain/COV001440/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_467961
 2020-03-19 2020-06-16
 United States hCoV-19/USA/CA-SR0431/2020
 C241T C1059T C3037T C14408T C16762T A23403G G25563T C26885T

EPI_ISL_468391 MT628127
 2020-03-19 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1417/2020
 T10Y C241T C1059T C3037T A6398C C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468975
 2020-03-19 2020-06-17
 Spain hCoV-19/Spain/Palma2542/2020
 C241T C3037T C7765T C9051A C14408T A20268G A21659T A23403G

EPI_ISL_469018
 2020-03-19 2020-06-17
 Italy hCoV-19/Italy/IZSPB_802/2020
 A1CCCGGA C241T C3037T C3487T C14408T G16935T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_469020
 2020-03-19 2020-06-17
 Italy hCoV-19/Italy/IZSPB_809/2020
 A1CCGAGGGA C241T C3037T C14408T T15978C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_470853
 2020-03-19 2020-06-19
 Australia hCoV-19/Australia/WA36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- A1515G C9223T G11083T C14805T T17247C T17859C G26144T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471178
 2020-03-19 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25302T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471220
 2020-03-19 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471539
 2020-03-19 2020-06-22
 Brazil hCoV-19/Brazil/SP-47/2020
 T25A C241T C3037T C14408T C21597T A23403G G25088T GGG28881AAC G29861A GA29864AC AAAAAAAAAAAAA29891-

EPI_ISL_474851
 2020-03-19 2020-06-23
 Spain hCoV-19/Spain/Churriana_de_la_Vega-COV002912/2020
 C241T C3037T C10369T C14408T A20268G A23403G

EPI_ISL_474870
 2020-03-19 2020-06-23
 Spain hCoV-19/Spain/Granada-COV002915/2020
 C8782T C26088T T28144C A28973T

EPI_ISL_474939
 2020-03-19 2020-06-23
 Spain hCoV-19/Spain/Pulianas-COV002918/2020
 C241T G2273R C3037T C14408T A20268G A23403G

EPI_ISL_475096
 2020-03-19 2020-06-23
 Sweden hCoV-19/Sweden/20-08317/2020
 C241T C3037T C14408T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_475321
 2020-03-19 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D1060/2020
 C1457T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_475322
 2020-03-19 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D109D/2020
 G1440A G2891A A7981G C10507T C13019T

EPI_ISL_475323
 2020-03-19 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D10AC/2020
 C1457T A2480G C2558T G11083T C11563T C14805T C18568T G26144T

EPI_ISL_475325
 2020-03-19 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D10D9/2020
 A7479G G11083T C14805T T17247C C25572T G26144T

EPI_ISL_475466
 2020-03-19 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CE7FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T A23403G G25429T A29491T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475815
 2020-03-19 2020-06-25
 Austria hCoV-19/Austria/CeMM0368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A28870R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475829
 2020-03-19 2020-06-25
 Austria hCoV-19/Austria/CeMM0388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C C884A G1880A C17410T G25654A C27881T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475832
 2020-03-19 2020-06-25
 Austria hCoV-19/Austria/CeMM0392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475839
 2020-03-19 2020-06-25
 Austria hCoV-19/Austria/CeMM0404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3466C C6781T C13862T C14408T C15352T A23403G C28836T G29229A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475917
 2020-03-19 2020-06-25
 Austria hCoV-19/Austria/CeMM0567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11412T T13258C C14408T C15824Y G22225K A23403G C23758T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475918
 2020-03-19 2020-06-25
 Austria hCoV-19/Austria/CeMM0568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11412T T13258C C14408T A14413W G16707K G22225T A23403G C23758T T27017Y C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475922
 2020-03-19 2020-06-25
 Austria hCoV-19/Austria/CeMM0575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11345T C11412T T13258C C14408T A23403G G25526T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476774
 2020-03-19 2020-06-25
 United States hCoV-19/USA/CA-CZB-1757/2020
 ATTAAAGGTTTAT1- G27670T

EPI_ISL_476775
 2020-03-19 2020-06-25
 United States hCoV-19/USA/CA-CZB-1758/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_476804
 2020-03-19 2020-06-26
 China hCoV-19/Hong Kong/VM20004178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9857T G11083T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_476829
 2020-03-19 2020-06-26
 Benin hCoV-19/Benin/843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- TGG89KSK T4463Y C8782Y C25688Y C26873T T28144C G28878A G29742A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_477203
 2020-03-19 2020-06-29
 Italy hCoV-19/Italy/IZSPB_694/2020
 ATTAAA1- C241T C3037T C14408T C19269T TTA21991- A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_477292
 2020-03-19 2020-06-29
 United States hCoV-19/USA/MN-MDH-1203/2020
 ATTA1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_477615
 2020-03-19 2020-06-29
 Hungary hCoV-19/Hungary/US-1791lc/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T T18495C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477683
 2020-03-19 2020-06-29
 United States hCoV-19/USA/UNKNOWN-UW-1671/2020
 AT1GA A4T C36H C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_477689
 2020-03-19 2020-06-29
 United States hCoV-19/USA/WA-UW-1613/2020
 AT1GW A4T C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A TG29867AA C29870A

EPI_ISL_477694
 2020-03-19 2020-06-29
 United States hCoV-19/USA/WA-UW-1632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C36T C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_478543
 2020-03-19 2020-06-30
 United Kingdom hCoV-19/England/NORT-284372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G11083T T13216G C14408T A19960G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478544
 2020-03-19 2020-06-30
 United Kingdom hCoV-19/England/NORT-284381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479885
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C925T C1059T C3037T C5310T C14408T A23403G G25563T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479901
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479909
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479910
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479959
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T4402C G5062T C8782T C16466T C25585T T28144C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479960
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- T4402C G5062T C8782T T28144C G29742T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479961
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480106
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T C18167A C19102T A23403G G25563T C29247T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480107
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C1059T C3037T C14408T C18167A C19102T A23403G G25563T C29247T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480109
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G3179A C6982T C8782T T28144C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_480110
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- G2534T G3179A C6982T C8782T G25996T T28144C G28209T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480117
 2020-03-19 2020-07-01
 Japan hCoV-19/Japan/PG-0455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G3179A C6982T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480386 MT772553
 2020-03-19 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C8016T C14408T T15366C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480388 MT772555
 2020-03-19 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480772 MT745740
 2020-03-19 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2165/2020
 C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_481256
 2020-03-19 2020-07-03
 Germany hCoV-19/Germany/NW-RKI-N-0002/2020
 C241T C3037T C14408T A23403G C25688T GGG28881AAC

EPI_ISL_482324
 2020-03-19 2020-07-03
 United States hCoV-19/USA/OR-PROV-042/2020
 C8782T C17747T A17858G C18060T C21789T T28144C

EPI_ISL_482474
 2020-03-19 2020-07-03
 Canada hCoV-19/Canada/MB_58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482479
 2020-03-19 2020-07-03
 Canada hCoV-19/Canada/NL_72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G23726A C26088T C26527T T28144C ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_483002
 2020-03-19 2020-07-06
 United States hCoV-19/USA/MN-MDH-1281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C6861T C14408T C19170T G19509A A23403G C24370T C27625A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_483964
 2020-03-19 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G12662A C14408T C14786T G20578T G21624T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483967
 2020-03-19 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D4C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2764T C6026T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488520
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-2843BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K G27996T C28394A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488527
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-2843DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488554
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-2843EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G A8252R C9223T G11071C C11074T G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488572
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-284390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2141Y G11083T C14805T G18880T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488673
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-2843AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T G27906T T29661C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488763
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-281700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488765
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-2816E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488789
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-28171F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C8090T C10789T G19999T C23557T A29115G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488821
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-2817D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488824
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-284354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T A2480G C2558T C7086T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488833
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-2817F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- TGGTCATGTTATG508- ATG1605- G4559R C5183T T8473C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489649
 2020-03-19 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-16FB76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491092
 2020-03-19 2020-07-16
 Czech Republic hCoV-19/Czech Republic/NRL_3971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G14593A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491451
 2020-03-19 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0040/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T AC5114CA TT5117AC T5120A C14408T C16260T A23403G G25563T G27390T C28821A CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_492123
 2020-03-19 2020-07-20
 Australia hCoV-19/Australia/SAP183/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T G25879T A27887G

EPI_ISL_492125
 2020-03-19 2020-07-20
 Australia hCoV-19/Australia/SAP186/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T A8651C C14408T A23403G G25563T G25879T

EPI_ISL_492126
 2020-03-19 2020-07-20
 Australia hCoV-19/Australia/SAP187/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_492133
 2020-03-19 2020-07-20
 Australia hCoV-19/Australia/SAP368/2020
 C241T C3037T G8303A C14408T A23403G GGG28881AAC

EPI_ISL_492137
 2020-03-19 2020-07-20
 Australia hCoV-19/Australia/SAP372/2020
 AT1- C241T C1059T A2015G C3037T C14408T A23403G G25563T

EPI_ISL_492160
 2020-03-19 2020-07-20
 Australia hCoV-19/Australia/SAP395/2020
 ATTAAAGGTT1- C241T C3037T T7855C G8303A C14408T A23403G GGG28881AAC

EPI_ISL_492161
 2020-03-19 2020-07-20
 Australia hCoV-19/Australia/SAP396/2020
 ATTAAAGGTTTATACC1- G1440A G2891A G6463T A27669G

EPI_ISL_493201
 2020-03-19 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-006/2020
 ATTAAAGGTT1- A2480G C2558T G11083T C14805T C23525T G26144T A29872C -29874GCATAGTAGTTGCATACTTGTTTT A29877C AAA29880TTT -29886GGGTTTATG A29890C -29893TTACCTAT -AA29897TTCTGTGGCTATGG A29903C

EPI_ISL_494733
 2020-03-19 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1673/2020
 ATTAAAG1- C241T C1059T C3037T C14408T T19791C A23403G G25563T

EPI_ISL_497786
 2020-03-19 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497832
 2020-03-19 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T C25006T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498041
 2020-03-19 2020-07-26
 South Korea hCoV-19/Korea/KCDC2140/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_498551 MT801000
 2020-03-19 2020-07-27
 Lebanon SARS-CoV-2/human/LBN/LB-R8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G C26527T G29734C

EPI_ISL_499461
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A586F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C24034T

EPI_ISL_499468
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A692F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C4586T C20270T G22661T

EPI_ISL_499645
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A58E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1623C C3037T A4797T C14408T A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499659
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5D24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A6672G C14408T G20275A A23403G

EPI_ISL_499704
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A63A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C4551T C14408T T18351C A23403G G25563T C29870A

EPI_ISL_499706
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A63F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T1910A A2480G C2558T A7259G T8029A G11083T C13860Y C14805T T19119C G26144T C28849T C29870A

EPI_ISL_499726
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C988T G11083T C14805T T17247C G26144T

EPI_ISL_499732
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A66DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7609T C14408T T17055C A20268G A23403G

EPI_ISL_499741
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A67AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C12473Y C14408T G15380T A23403G G25563T G26428K G27204K

EPI_ISL_499742
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A67DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T C14805T G26144T G29414A

EPI_ISL_499743
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A67E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C5512T C10507T C29870A

EPI_ISL_499744
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A67F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_499748
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A687D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T C14585Y A23403G C23731T G28580T GGG28881AAC

EPI_ISL_499749
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A688C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_499759
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C875A C1387T C2416T C3037T C3622T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_499766
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6A4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C106Y C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC C29870A

EPI_ISL_499776
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6B65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_500115
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A53D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500116
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A545C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC

EPI_ISL_500133
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A561A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G21624T A23403G GGG28881AAC

EPI_ISL_500134
 2020-03-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C10755Y G11083T C14805T T17247C G26144T

EPI_ISL_500510
 2020-03-19 2020-07-29
 United States hCoV-19/USA/CO-UW-MAYO39/2020
 ATTAAAG1- AACC34TTTA C241T C1059T C3037T C11471T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_500638
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G578A C8782T C17747T A17858G C18060T A24694T T28144C C29606T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500639
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C11779T C13730T C23929T C28311T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500640
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G6753A C11074T G11083T C13730T C23929T A25615G C28311T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500641
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T A17585T T18736C G19684T C24034T T26729C C27635T G28077C T28144C G29690T A29700G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500645
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500647
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500648
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500661
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17808T A21405T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500675
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500677
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C C14408T A23403G C29353T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500678
 2020-03-19 2020-07-29
 Australia hCoV-19/Australia/NSW2231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501225
 2020-03-19 2020-07-31
 Malaysia hCoV-19/Malaysia/9136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C3817T C6312A G11083T C13730T C19524T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501226
 2020-03-19 2020-07-31
 Malaysia hCoV-19/Malaysia/9593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A C7011T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501614
 2020-03-19 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260EF54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507084
 2020-03-19 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC G29645T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_507086
 2020-03-19 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T T11661C C12115T G13627T C14805T C15540T G26144T A28338G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507718
 2020-03-19 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21464/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C2723T C3037T C11866T C14408T G21423R A23403G G25563T C27476Y ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_507973
 2020-03-19 2020-08-03
 United States hCoV-19/USA/MN-MDH-1386/2020
 ATTAAAGGT1- C241T C3037T C6762T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_508122
 2020-03-19 2020-08-04
 Australia hCoV-19/Australia/SAP184/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_508140
 2020-03-19 2020-08-04
 Australia hCoV-19/Australia/SAP450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_508777 MT834619
 2020-03-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0573/2020
 A1- C241T C1059T C3037T C5884T C13487T C14408T C22858T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_508778 MT834620
 2020-03-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C5884T C7834T C13487T C14408T C22858T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508804 MT834648
 2020-03-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0600/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508870
 2020-03-19 2020-08-04
 Switzerland hCoV-19/Switzerland/1000486784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C15324T G20489T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509002
 2020-03-19 2020-08-04
 France hCoV-19/France/ARA1125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATG1- C241T C2416T C3037T G8371T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_509495
 2020-03-19 2020-08-05
 Australia hCoV-19/Australia/NSW2055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509496
 2020-03-19 2020-08-05
 Australia hCoV-19/Australia/NSW2063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T A17585T T18736C G19684T C24034T T26729C C27635T G28077C T28144C G29690T A29700G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509508
 2020-03-19 2020-08-05
 Australia hCoV-19/Australia/NSW2180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509510
 2020-03-19 2020-08-05
 Australia hCoV-19/Australia/NSW2184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509701 MT844034
 2020-03-19 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1234/2020
 T490A G1590A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_510929
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511053
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A6569G C14408T A20268G A23403G C25117T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511054
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A6569G C14408T A20268G A23403G C25117T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511055
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C13680T C14408T C17104T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511056
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511057
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511058
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G1957A C2143T C8782T T9477A C14805T A25725G G25785T G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511059
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G26101T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511060
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T658C C3037T C14408T G15906T A23403G A24862G C28629T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511062
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511063
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511064
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511065
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29025T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511144
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCT1- C241T C3037T C14408T A23403G G25650T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511146
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2416T C3037T A7479G C12513T C14408T C21575T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511222
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C22450T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511223
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C22450T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511225
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G19677T A23403G G28655T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511226
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G16744A A20268G G21190A A23403G T26301G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511228
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511230
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C10319T C14408T C16575T A20268G A23403G C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511296
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511297
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G GGG28881AAC C29197T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511298
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G246T C3037T C14408T A23403G G24098T C25714T G27703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511299
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTC1- C241T C3037T C3140T C14408T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511301
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G G21538T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511446
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G T29726- TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511448
 2020-03-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G T29726- TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512656
 2020-03-19 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T G2329A C3037T C14408T A20268G A23403G C26208T G28248T AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_513300 MT704818
 2020-03-19 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_3ZK/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_513460 MT886334
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T G8102T C14408T G14712A C14877T C17738A A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513461 MT886335
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- G204T C241T C1059T C3037T G8676T C14408T A23403G C23733A G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513462 MT886336
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- T490A C3177T C4543T G4720T C8782T T18736C G19684T C24034T C26681T T26729C C27635T G28077C T28144C A29700G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513476 MT886350
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513484 MT886358
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513485 MT886359
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513486 MT886360
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513489 MT886363
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- A5317G C6558T C8782T C17747T A17858G C18060T G19086T A19476G C27577T T28144C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513490 MT886364
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGC1- C241T C1059T C3037T C5884T C13487T C14408T C22858T A23403G G24872T G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513491 MT886365
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513496 MT886372
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G A25864G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513505 MT886381
 2020-03-19 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C3317T C8782T C17747T A17858G C18060T A24694T T28144C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514461
 2020-03-19 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D1701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T C9474T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514639 MT892986
 2020-03-19 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- T490A C2710T C3177T C8782T C9430T T18736C T23677C C24034T T26729C C27635T G28077C T28144C A29700G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515313
 2020-03-19 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0026/2020
 ATT1- G7016T G25429T G29711T

EPI_ISL_515314
 2020-03-19 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T A7921G C14408T A23403G

EPI_ISL_515315
 2020-03-19 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0028/2020
 ATT1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515546
 2020-03-19 2020-08-19
 Brazil hCoV-19/Brazil/SP-632/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C14408T C14491T A23403G G25088T GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_515554
 2020-03-19 2020-08-19
 Brazil hCoV-19/Brazil/SP-639/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC C29857T T29859G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_516270
 2020-03-19 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_516274
 2020-03-19 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_516275
 2020-03-19 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G12221R C12534Y C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_516277
 2020-03-19 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_516278
 2020-03-19 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_516283
 2020-03-19 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C228T G1397A G3476A C5467T A8848W G9479T A9514G G11083T G26720C T28688C T28835C G29742T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_516864
 2020-03-19 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FFC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C4320T C11074T G11083T C14805T T19692G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516924
 2020-03-19 2020-08-24
 Montenegro hCoV-19/Montenegro/ChVir-1268662002/2020
 ATTAAAGGTTT1- C241T C3037T C9344T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_518861 MT920000
 2020-03-19 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C11916T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518894 MT920034
 2020-03-19 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1501/2020
 ATTAAAGGTTTATACCTTCCCA1- C8782T C17747T A17858G C18060T G23755T A24694T T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_518895 MT920035
 2020-03-19 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A20755C A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_520743
 2020-03-19 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L9584510/2020
 C241T C3037T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_523291
 2020-03-19 2020-08-26
 Netherlands hCoV-19/Netherlands/LI-EMC-86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26305T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_523471
 2020-03-19 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523472
 2020-03-19 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523965
 2020-03-19 2020-08-27
 Brazil hCoV-19/Brazil/SP-166/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G11083T C12053T C14408T A23403G G25088T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_524801
 2020-03-19 2020-08-28
 Brazil hCoV-19/Brazil/PB-IEC-161853/2020
 C241T C3037T C14408T C15324T C16428T G18651T A23403G

EPI_ISL_525543
 2020-03-19 2020-08-31
 France hCoV-19/France/ARA11231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_525623
 2020-03-19 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-24149-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_526435
 2020-03-19 2020-09-01
 United Kingdom hCoV-19/England/PORT-2D1FBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526800
 2020-03-19 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0579/2020
 ATTAAAGGTTTA1- G1440A G2891A A6944G C9430T A29871R AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_528223
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42198617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8059C C14408T C15324T C15654T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528224
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42198619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G6553T C8950T C13862T C14408T A23403G C28836T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528225
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42198620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G6553T C8950T C13862T C14408T A23403G C28836T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528227
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42198664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12076T T12739C C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528229
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42198756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C21575T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528231
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42198812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G101A C241T C3037T G12167T C14408T C15324T A23403G C26142T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528232
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42198823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528233
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42198935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A2590G C3037T C14408T C15324T A23403G C26013T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528235
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A13947T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528236
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528239
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C7834T C8782T T9477A C14805T G25979T C26681T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528267
 2020-03-19 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42200091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T TAG423- C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528539
 2020-03-19 2020-09-08
 Brazil hCoV-19/Brazil/RJ-LVM161-2/2020
 C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_530040
 2020-03-19 2020-09-10
 Spain hCoV-19/Spain/MD-LP111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17763C A20268G T21883C A23403G C28153T C29249T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534849
 2020-03-19 2020-09-14
 United Kingdom hCoV-19/England/OXON-B32D9/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_534850
 2020-03-19 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC AAAA29900W

EPI_ISL_535865
 2020-03-19 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00227658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535866
 2020-03-19 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00227663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535869
 2020-03-19 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00227996/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G C26313T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535871
 2020-03-19 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00228149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5730T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535885
 2020-03-19 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229136/2020
 ATTAAA1- C8782T C17747T A17858G C18060T T28144C TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535905
 2020-03-19 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21624T A23403G A26530G C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536548
 2020-03-19 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-155/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536550
 2020-03-19 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-157/2020
 ATTAAAG1- C241T C3037T G10265A C14408T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_537597
 2020-03-19 2020-09-16
 United States hCoV-19/USA/CA-UCLA-72/2020
 A1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAA29897-

EPI_ISL_537604
 2020-03-19 2020-09-16
 United States hCoV-19/USA/CA-UCLA-87/2020
 ATTAAAGGTTTAT1- C37T C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_539525
 2020-03-19 2020-09-18
 Spain hCoV-19/Spain/CL-ISCIII-204996/2020
 ATTA1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_540924
 2020-03-19 2020-09-22
 Peru hCoV-19/Peru/ARE-UPCH-0016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T G4657T C5907T C6543T C14408T C15277T A21917G A23403G C24023T G24116T C25872T A26530G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_541344
 2020-03-19 2020-09-22
 Brazil hCoV-19/Brazil/PR-5621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541374
 2020-03-19 2020-09-22
 Brazil hCoV-19/Brazil/SE-6533/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G C25688T A28779G GGG28881AAC GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_541376
 2020-03-19 2020-09-22
 Brazil hCoV-19/Brazil/SE-6536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C20032T A23403G T27299C GGG28881AAC T29148C GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_547483
 2020-03-19 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G25677A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549024
 2020-03-19 2020-09-28
 Sweden hCoV-19/Sweden/RV-FOI-5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560594
 2020-03-19 2020-09-29
 France hCoV-19/France/HDF8242/2020
 T42C C241T C2416T C3037T C14408T A23403G G25563T A29879R AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_560661
 2020-03-19 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563817
 2020-03-19 2020-09-30
 Australia hCoV-19/Australia/VIC13728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747Y A17858G C18060T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565984
 2020-03-19 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A5011M C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_568515
 2020-03-19 2020-10-02
 Peru hCoV-19/Peru/JUN-UPCH-0118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C12534T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_568581
 2020-03-19 2020-10-02
 Thailand hCoV-19/Thailand/Bangkok-CONI-0216/2020
 ATTA1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAA29893-

EPI_ISL_568582
 2020-03-19 2020-10-02
 Thailand hCoV-19/Thailand/Bangkok-CONI-0217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C

EPI_ISL_568583
 2020-03-19 2020-10-02
 Thailand hCoV-19/Thailand/Bangkok-CONI-0219/2020
 ATTAAAGGTTTATACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_569465
 2020-03-19 2020-10-02
 France hCoV-19/France/IHU-0340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT318827
 2020-03-19 2020-04-08
 Germany SARS-CoV-2/human/DEU/HH-1/2020
 G160A C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT350263
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0480/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350264
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0428/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350265
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0427/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350266
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0434/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350267
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0442/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350268
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0418/2020
 C3784T C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350270
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0432/2020
 C8782T C17747T A17858G C18060T G23120T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350272
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0448/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350273
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0478/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350274
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0422/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350275
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0484/2020
 C8782T T11320C C17747T A17858G C18060T T28144C C28873T AAAAAAAAAAAAAAAAAAAAA29883-

MT350276
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0429/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350277
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0441/2020
 C8782T T11320C G17302T C17747T A17858G T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350278
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0440/2020
 C8782T T11320C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350279
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0711/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT350280
 2020-03-19 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0447/2020
 C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT371572
 2020-03-19 2020-04-15
 Czech Republic SARS-CoV-2/human/CZE/CzechiaMotol_2174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A21643C C22432T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT459862
 2020-03-19 2020-05-11
 Greece SARS-CoV-2/human/GRC/146_35473/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- GTTATG515- A2480G C2558T G11083T C14805T G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459868
 2020-03-19 2020-05-11
 Greece SARS-CoV-2/human/GRC/155_35480/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT477839
 2020-03-19 2020-05-14
 United States SARS-CoV-2/human/USA/AK013/2020
 ATTAAAGGTTTA1- C241T C3037T C6504T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT509457
 2020-03-19 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11083T C14408T G15594A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509460
 2020-03-19 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T T28393C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT510722
 2020-03-19 2020-05-25
 United States SARS-CoV-2/human/USA/hCoV-19-USA-CA-UCSF-UC44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T C29614T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

MT510723
 2020-03-19 2020-05-25
 United States SARS-CoV-2/human/USA/hCoV-19-USA-CA-UCSF-UC45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11674T C14408T A23403G C27046T GGG28881AAC TACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29760-

MT671813
 2020-03-19 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1757/2020
 ATTAAAGGTTTAT1- G27670T

MT671814
 2020-03-19 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1758/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT706164
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2695T A10323G G11083T C14805T T17247C G26144T G29262T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706168
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T9697C T18765C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706178
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706181
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706190
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706191
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706198
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G558T C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706296
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706297
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706298
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706299
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706300
 2020-03-19 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C18877T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810538
 2020-03-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1673-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T T19791C A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810563
 2020-03-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0431-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T C26885T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810915
 2020-03-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0177-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C8389T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810963
 2020-03-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0258-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T C26873T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MW030215
 2020-03-19 2020-09-22
 Peru SARS-CoV-2/human/PER/covper079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C14408T C18877T A23403G G25563T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030217
 2020-03-19 2020-09-22
 Peru SARS-CoV-2/human/PER/covper081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW047307
 2020-03-19 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000501/2020
 C241T C1059T C3037T C14408T A23403G G25563T

MW047308
 2020-03-19 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000502/2020
 C241T C1059T C3037T G3068A C9169T C14408T A23403G G25563T

EPI_ISL_416744
 2020-03-20 2020-03-23
 Hungary hCoV-19/Hungary/mbl49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T A11839G C14408T C16575T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417028 MT334538
 2020-03-20 2020-03-23
 United States SARS-CoV-2/human/USA/UT-00020/2020
 C1102T T2992C C8782T C17747T A17858G C18060T T28144C C29774T

EPI_ISL_417917 MT372481
 2020-03-20 2020-03-27
 Malaysia SARS-CoV-2/human/MYS/189332/2020
 A1Y TAA3WBM T2737A C6310A C6312A G11083T C13730T G13975A C19524T C23929T C28311T T29859W GG29861AA G29864A TG29867AA C29870A

EPI_ISL_417950
 2020-03-20 2020-03-27
 Democratic Republic of the Congo hCoV-19/DRC/158/2020
 ATTA1- A2480G C2558T G11083T C14805T C20402T G24926T G26144T G29254T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_418328
 2020-03-20 2020-03-20
 Canada hCoV-19/Canada/ON_PHL3670/2020
 A1- G1440A G2891A C7011T G25593C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_418350
 2020-03-20 2020-03-20
 Canada hCoV-19/Canada/ON_PHL3380/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_419174
 2020-03-20 2020-04-01
 France hCoV-19/France/ARA11980/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419264
 2020-03-20 2020-04-01
 Belgium hCoV-19/Belgium/UGent-12/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_419300 LC547522
 2020-03-20 2020-04-02
 Japan hCoV-19/Japan/P3-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C4321T C14408T C18877T A23403G G25563T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_419306 LC547528
 2020-03-20 2020-04-02
 Japan hCoV-19/Japan/P4-6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T C23248T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_419307 LC547529
 2020-03-20 2020-04-02
 Japan hCoV-19/Japan/P4-7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T C23248T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_419472
 2020-03-20 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-24A35/2020
 ATT1- G1440A G2891A C25669T G28851T

EPI_ISL_419474
 2020-03-20 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-24A62/2020
 AT1- G1440A G2891A G28851T

EPI_ISL_419496
 2020-03-20 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-24BC9/2020
 A1515G C9223T G11083T T13064C C14805T T17247C C17747T G26006C G26144T

EPI_ISL_419499
 2020-03-20 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-24BF6/2020
 A1- G1440A C2371T G2891A G28851T

EPI_ISL_419508
 2020-03-20 2020-04-02
 United Kingdom hCoV-19/Wales/PHWC-24D87/2020
 G1440A G2891A C18312T T25051C G28851T

EPI_ISL_419675
 2020-03-20 2020-04-03
 Spain hCoV-19/Spain/Valencia11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T T18834C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419725 MT451023
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_419728 MT451033
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A38G C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_419729 MT451034
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC127/2020
 ATTAAAGGT1- A2480G C2558T T6971C G6975T G6977A C9170T G11083T C14805T G26144T

EPI_ISL_419730 MT451035
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC128/2020
 ATTAAAGGTTTA1- C241T C2507T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_419731 MT451032
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2507T C3037T C3373A C14408T GGG28881AAC

EPI_ISL_419732
 2020-03-20 2020-04-03
 Australia hCoV-19/Australia/VIC129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- ATG1605- C1912T

EPI_ISL_419903 MT451109
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC208/2020
 ATTA1- A7479G C11074T G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_419904 MT451110
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_419906 MT451112
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC211/2020
 ATTA1- C241T C1059T C3037T C14408T G17562T A23403G G25563T

EPI_ISL_419908 MT451114
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419909 MT451115
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC214/2020
 A1- C241T C1059T C3037T G3307A C14408T A23403G G25563T

EPI_ISL_419910 MT451116
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_419911 MT451117
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2523T C3037T C14408T A23403G G25563T

EPI_ISL_419912 MT451118
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC217/2020
 AT1- C241T G613A C3037T C14408T G22346A A23403G

EPI_ISL_419913 MT451119
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C527T A2480G C2558T G11083T T11182C C13721T C14805T G23593T G26144T C26885T

EPI_ISL_419914 MT451120
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC219/2020
 ATTAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419915 MT451121
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C5211Y C14408T C17985T A23403G C23423T C24844T G25563T C29353T

EPI_ISL_419916 MT641651
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T TGTTATGGT514- C2416T C3037T G8371T C14408T C14688T A23403G G25563T

EPI_ISL_419917 MT451122
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC222/2020
 C8782T A9307G G13118T C17747T A17858G C18060T C22480T A24694T T28144C

EPI_ISL_419918 MT451123
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC223/2020
 ATT1- C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G

EPI_ISL_419919 MT451124
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T G613A C3037T C14408T G22346A A23403G

EPI_ISL_419920 MT451125
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G957A C8782T G11083T C17747T A17858G C18060T T28144C

EPI_ISL_419921 MT451126
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC226/2020
 ATTAAAGG1- C241T A1015G C3037T A3625C C14408T T17688C A23403G GGG28881AAC

EPI_ISL_419922 MT451127
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C1059T T1368Y C3037Y C6990T G11083K C14408Y C14805Y C20736T A23403G C24844Y G25563T G26558K

EPI_ISL_419923 MT451128
 2020-03-20 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC228/2020
 A1- C241T A1015G C3037T A3625C C14408T T17688C A23403G GGG28881AAC A29865R

EPI_ISL_420020 MT322416
 2020-03-20 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T C14925T A23403G G25563T C29870M

EPI_ISL_420052
 2020-03-20 2020-04-04
 France hCoV-19/France/IDF3029/2020
 C241T C3037T G9130T T13273C C14408T A23403G C24381T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_420058
 2020-03-20 2020-04-04
 France hCoV-19/France/IDF3163/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_420060
 2020-03-20 2020-04-04
 France hCoV-19/France/IDF3170/2020
 C241T C2416T C3037T C10450T C14408T T17075A A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420074
 2020-03-20 2020-04-04
 Senegal hCoV-19/Senegal/600/2020
 A80G C241T C3037T C14408T A23403G G28116A

EPI_ISL_420076
 2020-03-20 2020-04-04
 Senegal hCoV-19/Senegal/611/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_420077
 2020-03-20 2020-04-04
 Senegal hCoV-19/Senegal/618/2020
 C8782T G22468T T28144C G28878A C29149T G29742A

EPI_ISL_420085
 2020-03-20 2020-04-05
 Taiwan hCoV-19/Taiwan/107/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G C23679T G25563T G28857A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_420284
 2020-03-20 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0576/2020
 ATG1605- T4949C G6734A C16887T

EPI_ISL_420285
 2020-03-20 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C060A/2020
 C2558T G11083T C14805T G26144T C29167T

EPI_ISL_420357
 2020-03-20 2020-04-06
 Belgium hCoV-19/Belgium/JLJ-0320101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4706C G8459T G10496T G11083T C14805T T17247C C19448T A23403G TAT24259ATA G24474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420363
 2020-03-20 2020-04-06
 Belgium hCoV-19/Belgium/VNP-0320107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420629 MT322415
 2020-03-20 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C14925T A23403G G25563T C29870A

EPI_ISL_420929
 2020-03-20 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25005/2020
 ATTA1- G431A ATG1605- C13860Y C20270T C28725T A29683T

EPI_ISL_421309
 2020-03-20 2020-04-07
 United States hCoV-19/USA/WI-UW-51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421312
 2020-03-20 2020-04-07
 United States hCoV-19/USA/WI-UW-54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T T19071A A23403G T24982C G25563T C25624T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421332
 2020-03-20 2020-04-07
 United States hCoV-19/USA/WI-UW-74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421459
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- T514C ATG1605- C28923T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421460
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G5194T T11698C C14408T A20268G A23403G C25672T C26882T G26951T C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421461
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G1440A G2891A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421462
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G G25593T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421463
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1594T C3037T C11109T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421466
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421467
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T C19263T C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421489
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T G19327T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421494
 2020-03-20 2020-04-08
 Portugal hCoV-19/Portugal/PT0091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421514
 2020-03-20 2020-04-08
 France hCoV-19/France/CVL3365/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T T18411C A20268G A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_421595 MT371021
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_421612 MT370935
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_421613 MT370971
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C1625T G11083T C14805T T17247C G26144T G28739T GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_421614 MT370973
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C1625T G11083T C14805T T17247C A19166G G26144T TGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29765-

EPI_ISL_421615 MT370968
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T G1820A C3037T C10851T C14408T A23403G G25563T C28737T TGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29765-

EPI_ISL_421616 MT370980
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C1625T G11083T C14805T T17247C A19166G G26144T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421617 MT371006
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_421619 MT370933
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NJ-PV09072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421620 MT371027
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C19018T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421621 MT370949
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T G10265A C14408T C15963T A23403G C26907T GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421623 MT370946
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T C20555T A23403G G25563T G28077T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_421624 MT370934
 2020-03-20 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_422507 MT370995
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C13548T C14408T G21485T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422508 MT371029
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T G6443A A13755G C14408T A23403G G25563T G28827T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_422511 MT370961
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T C28969A CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_422513 MT370937
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C2416T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422514 MT370921
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A20755C A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422515 MT370948
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T G29511T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422516 MT370925
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C183T C241T C1059T C3037T C7728T C14408T A23403G G25563T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_422517 MT370985
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_422543 MT371018
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T T29308C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422544 MT371015
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T T12045C C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422547 MT370986
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T G625T C1059T C3037T G11083T C14408T A23403G G25563T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_422548 MT370970
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25614T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422549 MT370950
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422550 MT370994
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C18877T A23403G G25563T C26681T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422551 MT370932
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422552 MT370988
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T G22225A A23403G G25563T G29540A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422553 MT371036
 2020-03-20 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1594T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422638 LR877945
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C2695T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422640 LR877947
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17502T A23403G C28139A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422646 LR877949
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/Limburg_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C14408T A23403G A24862G C28629T C29253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422648 LR877946
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/Limburg_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422688 LR877760
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422693 LR877756
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422694 LR877759
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422859 LR877948
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422860 LR877938
 2020-03-20 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10440T C14408T G18615A A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423181
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20134081904/2020
 C241T C3037T C9891Y C14408T G16146T A23403G A26530R G28739T

EPI_ISL_424007
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20129018904/2020
 A2480G C2558T C4084T G11083T C14805T G20126S G25494T G26144T A26319T

EPI_ISL_424010
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20129020304/2020
 C241T C3037T C11681T C14408T A23403G C25350Y

EPI_ISL_424012
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20129020604/2020
 C241T C2416T C3037T G5642K C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_424024
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20129033804/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_424025
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20129033904/2020
 C241T C3037T C9474Y C14408T A23403G G25429T

EPI_ISL_424032
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20129036004/2020
 C241T C2940T C3037T C14408T A23403G

EPI_ISL_424037
 2020-03-20 2020-04-12
 United Kingdom hCoV-19/England/20129037204/2020
 A2480G C2558T G11083T C14805T C15368T G25407T C25626T G26144T

EPI_ISL_424186 MT326112
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- G91C C241T C1059T C3037T G4975T C14408T C20823T A23403G G25523T G25563T T27869C AA29902-

EPI_ISL_424187 MT326113
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1646/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C6040T C14408T A23403G G25563T AAAAAAAAAAAAAA29890-

EPI_ISL_424191 MT326116
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C36T C8782T T11320C C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_424192 MT326117
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1688/2020
 ATTAAAGG1- G11083T TTT11541- C14805T T17247C G26144T AA29902-

EPI_ISL_424194 MT326119
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T C14408T A23403G G25563T C27213T -29904ANANANANA

EPI_ISL_424196 MT326121
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAA1- C8782T G10523C C17747T A17858G C18060T T28144C A29903-

EPI_ISL_424198 MT326123
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- T150C T153G AAGTCATTT686- C8782T C17747T A17858G C18060T T28144C AA29902-

EPI_ISL_424199 MT326124
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- GTCATGTTA510- C8782T A17622G C17747T A17858G C18060T T28144C AAA29901-

EPI_ISL_424200 MT326125
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A G29864A TG29867AA C29870A

EPI_ISL_424202 MT326127
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1651/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAA29893-

EPI_ISL_424203 MT326128
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T G2527A C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_424204 MT326129
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1698/2020
 ATTAAAG1- AACC34HTHH C241T C1059T C3037T G11083T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_424205 MT326130
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_424207 MT326132
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1716/2020
 ATTAAAGGTTTAT1- AACC34TTTH C241T C1059T C3037T G7561A C14408T A23403G G25563T G28881A A29866G A29869T AA29902-

EPI_ISL_424208 MT326133
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1712/2020
 ATTAAAG1- G8C TACCTTCCCAGGTAACAAACCAACC13- C241T C1059T C3037T T4597C C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424209 MT326134
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1765/2020
 ATTAAAGGTTTATACCTTCCCA1- AACC34TTTA C1238T C3593T C4683T C8782T C17747T A17858G C18060T A27200G T28144C T28924C AAAAAAAAAAAAAAAAA29887-

EPI_ISL_424210 MT326135
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATG1- T6345C C8092T C8782T C12534T C17747T A17858G C18060T C26037T T28144C

EPI_ISL_424213 MT326138
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- T150C T153G A6693G C8782T C14877T A17287G C17747T A17858G C18060T T28144C A29188T A29700G TG29867AV -29904AAAAAAAAAA

EPI_ISL_424215 MT326140
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1680/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T G29291A AAAA29900-

EPI_ISL_424219 MT326144
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C8782T C17747T A17858G C18060T T28144C A29866V -29904ANANANANA

EPI_ISL_424222 MT326147
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C8782T C17747T A17858G C18060T T28144C G29868V

EPI_ISL_424249 MT326085
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-1791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCA1- C8782T C17747T A17858G C18060T T28144C C28887T -29904AAAAAAAAAAAAA

EPI_ISL_424286 MT326041
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/OR-UW-1849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C8782T C15240T C17747T A17858G C18060T G18984T C21774T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424321 MT326074
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/ID-UW-1925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424322 MT326075
 2020-03-20 2020-04-12
 United States SARS-CoV-2/human/USA/ID-UW-1934/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_424448
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/424/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424449
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/425/2020
 C241T C3037T G3548A A10323G C14408T A20268G A23403G

EPI_ISL_424450
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/426/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424451
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/427/2020
 C151T C241T G645A C3037T C14408T A23403G A26530G

EPI_ISL_424454
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/430/2020
 C241T C2416T C3037T C14408T C14786T C19884T A23403G G25563T

EPI_ISL_424455
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/431/2020
 C10376T

EPI_ISL_424456
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/432/2020
 C241T C2455T C3037T C10450T C14408T A23403G C24896T

EPI_ISL_424459
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/435/2020
 C241T C3037T C14408T C15324T C21575T A23403G

EPI_ISL_424460
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/436/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424461
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/437/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424462
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/438/2020
 C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C

EPI_ISL_424463
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/439/2020
 C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_424465
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/441/2020
 C241T C2416T C3037T C14408T C14786T C19884T A23403G G25563T

EPI_ISL_424466
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/442/2020
 C241T C3037T C10376T C14408T C16329T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_424467
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/443/2020
 C241T C3037T C3253T A13928G C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424468
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/444/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424469
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/445/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_424470
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/446/2020
 C5142T C10641T G11083T C14805T T17247C G26144T

EPI_ISL_424471
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/447/2020
 

EPI_ISL_424472
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/448/2020
 G1440A G2891A A4140G

EPI_ISL_424473
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/449/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_424474
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/450/2020
 C241T C3037T A10323G C14408T A20268G A20473C A23403G

EPI_ISL_424477
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/454/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_424478
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/455/2020
 C241T C2455T C3037T C10450T C14408T A23403G

EPI_ISL_424480
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/457/2020
 T3034C G11083T C14805T C16054T T17247C T17859C G26144T A28762G G29751C

EPI_ISL_424482
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/459/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424483
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/460/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424484
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/461/2020
 C241T C3037T C14408T G16935T A20268G A23403G G29734C

EPI_ISL_424485
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/462/2020
 C241T G526T C3037T C12138T C14408T A23403G GGG28881AAC

EPI_ISL_424486
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/463/2020
 C241T C3037T C14408T A23403G A26530G G29706T

EPI_ISL_424491
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/468/2020
 C241T C1059T C3037T C10319T C14408T G18213T A23403G G25563T

EPI_ISL_424494
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/471/2020
 C241T C3037T C14408T A23403G G27430A GGG28881AAC

EPI_ISL_424496
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/473/2020
 C241T C1059T G1743A C3037T C14408T A23403G G25555T G25563T

EPI_ISL_424499
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/476/2020
 G1440A G2891A A4140G

EPI_ISL_424500
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/477/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424502
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/479/2020
 G1440A G2891A C27661T

EPI_ISL_424503
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/480/2020
 A1321C G11083T T11857C C14805T T17247C G26144T

EPI_ISL_424506
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/483/2020
 C241T C3037T C14408T A23403G G27430A GGG28881AAC

EPI_ISL_424507
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/484/2020
 A1321C G11083T C14805T T17247C G26144T C28663T

EPI_ISL_424508
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/485/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424509
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/487/2020
 G1440A G2891A A4140G

EPI_ISL_424510
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/488/2020
 C241T C3037T C4002T G10097A C13536T C14408T C19718T A23403G C23731T GGG28881AAC

EPI_ISL_424511
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/489/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424512
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/490/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424514
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/492/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_424515
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/493/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424516
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/494/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424529
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/507/2020
 C241T C3037T A11839G C14408T G16377T T19839C A23403G G23856A GGG28881AAC

EPI_ISL_424530
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/508/2020
 C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_424531
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/509/2020
 C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_424532
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/510/2020
 C241T C1059T C1302T C2939T C3037T T11191G C14408T A23403G G25563T

EPI_ISL_424533
 2020-03-20 2020-04-13
 Iceland hCoV-19/Iceland/511/2020
 A1321C G11083T C14805T T17247C G26144T

EPI_ISL_425055
 2020-03-20 2020-04-14
 Belgium hCoV-19/Belgium/UGent-13/2020
 C241T C3037T G4255T C14408T A23403G A26530G

EPI_ISL_425131 MT582453
 2020-03-20 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-47/2020
 C241T C1059T C3037T C14408T G21372K A23403G C23683Y G25563T G29648T

EPI_ISL_425203
 2020-03-20 2020-04-14
 Spain hCoV-19/Spain/Valencia79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1519T T1671C C3037T C7834T C14408T C17639T C20259T A20268G A23403G C28638T G29009T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425205
 2020-03-20 2020-04-14
 Spain hCoV-19/Spain/Valencia81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C21855T A23403G GGG28881AAC C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425283
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74386/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425286
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-743E0/2020
 C241T C3037T C13730T C14408T A23403G G25429T

EPI_ISL_425287
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-743FF/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425288
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7440B/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425290
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74438/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_425294
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74483/2020
 G1068A G11083T C12513T C14805T T17247C G26144T

EPI_ISL_425296
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-744A1/2020
 A2480G C2558T G11083T C14805T G26144T C28507T

EPI_ISL_425298
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-744CF/2020
 A2480G C2558T G11083T C14805T G26144T C28005T

EPI_ISL_425318
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74641/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_425513
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E21A/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425514
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E229/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425515
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E238/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425517
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E256/2020
 ATG1605- A7824G C20270T

EPI_ISL_425518
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E265/2020
 C241T A749T G2527T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425519
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E283/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_425522
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E2B0/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425754
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR264/2020
 A7990C G11083T C14805T T17247C G26144T

EPI_ISL_425864
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB065/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_425867
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB068/2020
 A1691G G11083T C14805T T17247C G26144T

EPI_ISL_425870
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB073/2020
 C241T C3037T C3543T C14408T C16289T A23403G G25429T

EPI_ISL_425872
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB075/2020
 C6781T

EPI_ISL_425873
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB081/2020
 C241T C3037T C3792T C14408T C19484T A23403G

EPI_ISL_425887
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB097/2020
 G1440A G2891A

EPI_ISL_425888
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB098/2020
 C241T C3037T T3100G C14408T C17939T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_425889
 2020-03-20 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB099/2020
 C241T C3037T T3100G C14408T C17939T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_426320
 2020-03-20 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-25860-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18877T A20481G A23403G G24357A G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426448
 2020-03-20 2020-04-16
 United States hCoV-19/USA/WA_0457/2020
 C8782T T11320C C17747T A17858G C18060T G27604A T28144C C28826T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426453
 2020-03-20 2020-04-16
 United States hCoV-19/USA/WA_0797/2020
 C8782T T11320C C17747T A17858G C18060T C27416T T28144C C28657T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426520
 2020-03-20 2020-04-17
 United States hCoV-19/USA/AZ-TG269027/2020
 C241T C1059T C3037T C3411T C8293T C14408T A23403G G25563T C27964T A29006G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426522
 2020-03-20 2020-04-17
 United States hCoV-19/USA/AZ-TG269290/2020
 C241T C1059T C3037T C3411T C8293T C14408T A23403G G25563T C27964T A29006G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426523
 2020-03-20 2020-04-17
 United States hCoV-19/USA/AZ-TG269358/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426524
 2020-03-20 2020-04-17
 United States hCoV-19/USA/AZ-TG269439/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426542
 2020-03-20 2020-04-17
 United States hCoV-19/USA/AZ-TG271878/2020
 C241T C619T C1059T C3037T C14408T A14912G A22776T CA22802GC A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426544
 2020-03-20 2020-04-17
 United States hCoV-19/USA/AZ-TG271882/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426644 MT451226
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC335/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_426645 MT451227
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC336/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_426646 MT451228
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC337/2020
 C241T C3037T C14408T A23403G C29739T

EPI_ISL_426647 MT451229
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC338/2020
 ATTAAAGGTT1- T1570C C8782T T9477A A10323G C14805T G25979T T28144C C28657T C28863T G29705T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_426648 MT451230
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3955T T11638C C14408T A23403G GGG28881AAC C29708T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_426649 MT451231
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC340/2020
 ATTAAAGGTT1- C241T C3037T C7011T C14408T C16289T G17058A G19072T A23403G G25429T C25624T AA29902-

EPI_ISL_426650 MT451232
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A20268G A23403G A24121G C28854T

EPI_ISL_426651 MT451233
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC342/2020
 ATTA1- C3096T G11083T G13627T C14805T C15540T G26144T A28338G G29212T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_426653 MT451235
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3096T G11083T G13627T C14805T C15540T G26144T A28338G G29212T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_426654 MT451236
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G3248A C14408T A18710G A23403G G25563T

EPI_ISL_426655 MT451237
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC346/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_426656 MT451238
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC347/2020
 AT1- C241T C1059T G2945A C3037T C11916T C14408T A23403G G25563T G26466A

EPI_ISL_426657 MT451239
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC348/2020
 ATTA1- C241T C1059T C3037T C3130T C7843T C14408T T22939C A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_426658 MT451241
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC350/2020
 ATTA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C C29085T A29700G

EPI_ISL_426659 MT451242
 2020-03-20 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC351/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_427273
 2020-03-20 2020-04-17
 United States hCoV-19/USA/MN-MDH-117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A20755M A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427274
 2020-03-20 2020-04-17
 United States hCoV-19/USA/MN-MDH-118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10401T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427275
 2020-03-20 2020-04-17
 United States hCoV-19/USA/MN-MDH-119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427276
 2020-03-20 2020-04-17
 United States hCoV-19/USA/MN-MDH-120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427277
 2020-03-20 2020-04-17
 United States hCoV-19/USA/MN-MDH-121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427302
 2020-03-20 2020-04-18
 Brazil hCoV-19/Brazil/RJ-763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782C

EPI_ISL_427307
 2020-03-20 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4144S/2020
 C241T C3037T C14408T A20268G A23403G A28692C

EPI_ISL_428201
 2020-03-20 2020-04-19
 Sweden hCoV-19/Sweden/RV-FOI-6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14195A C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428269
 2020-03-20 2020-04-20
 United States hCoV-19/USA/WI-UW-173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428270
 2020-03-20 2020-04-20
 United States hCoV-19/USA/WI-UW-174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428271
 2020-03-20 2020-04-20
 United States hCoV-19/USA/WI-UW-175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G17658T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428272
 2020-03-20 2020-04-20
 United States hCoV-19/USA/WI-UW-176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C9474T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428273
 2020-03-20 2020-04-20
 United States hCoV-19/USA/WI-UW-177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428274
 2020-03-20 2020-04-20
 United States hCoV-19/USA/WI-UW-178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9520T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428348
 2020-03-20 2020-04-20
 France hCoV-19/France/GE3372/2020
 C241T C3037T G7065A C14408T C15324T C16428T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_428874
 2020-03-20 2020-04-22
 Russia hCoV-19/Russia/Yakutia-73709/2020
 C241T G1355T C3037T G10097A C14408T G17964T A23403G C23731T GGG28881AAC

EPI_ISL_428883
 2020-03-20 2020-04-22
 Russia hCoV-19/Russia/StPetersburg-73603/2020
 T514C ATG1605- C17410T

EPI_ISL_428885
 2020-03-20 2020-04-22
 Russia hCoV-19/Russia/Samara-73406/2020
 C241T C3037T C14408T A23403G

EPI_ISL_428886
 2020-03-20 2020-04-22
 Russia hCoV-19/Russia/Samara-73403/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428888
 2020-03-20 2020-04-22
 Russia hCoV-19/Russia/Yakutia-73703/2020
 C241T C3037T C14408T A23403G G28727T GGG28881AAC

EPI_ISL_429127
 2020-03-20 2020-04-23
 Sweden hCoV-19/Sweden/20-08332/2020
 C241T C1059T C3037T C14408T A23403G C23575T G24368T G25563T

EPI_ISL_429228
 2020-03-20 2020-04-23
 Italy hCoV-19/Italy/TE5674/2020
 C15T C241T AC538WM C3037T T7396W C14408T A23403G GGG28881AAC AAAA29900-

EPI_ISL_429695
 2020-03-20 2020-04-24
 Brazil hCoV-19/Brazil/CV42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACG1- C241T C3037T T5658A C14408T A23403G GCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29737-

EPI_ISL_429735
 2020-03-20 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS5358505/2020
 C241T C3037T C14408T A23403G C26256T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_430217 MT632505
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S179/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430220 MT632590
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S182/2020
 C241T C379A C1059T T2244C C3037T C14408T G25563T

EPI_ISL_430224 MT632512
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S186/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430225 MT632546
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S187/2020
 C8782T T11320C G12070T C17747T A17858G C18060T T28144C

EPI_ISL_430226 MT632508
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S188/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430227 MT632520
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S189/2020
 C241T C379A C1059T T2244C C3037T C8616T C14408T A23403G G25563T

EPI_ISL_430229 MT632493
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S191/2020
 C241T C379A C1059T T2244C C3037T C3177T C14408T A23403G G25563T

EPI_ISL_430230 MT632540
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S192/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430232 MT632514
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S194/2020
 C8782T T11320C C17747T A17858G C18060T T28144C C28826T

EPI_ISL_430233 MT632519
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S195/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430235 MT632498
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S197/2020
 C241T C379A C1059T T2244C C3037T C14408T G18255T A23403G G25563T

EPI_ISL_430236 MT632511
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S198/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430237 MT632523
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S199/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430238 MT632583
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S200/2020
 G1401A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_430239 MT632563
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S201/2020
 C8782T T11320C C17747T A17858G C18060T T28144C C28826T

EPI_ISL_430240 MT632517
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S202/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430241 MT632525
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S203/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T C27513T

EPI_ISL_430243 MT632499
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S205/2020
 C241T C379A C1059T T2244C C3037T C3177T C14408T A23403G G25563T

EPI_ISL_430244 MT632527
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S206/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430245 MT632599
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S207/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430249 MT632577
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S211/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_430252 MT632509
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S214/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25916T G29553A

EPI_ISL_430253 MT632526
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S215/2020
 C8782T T11320C C17747T A17858G C18060T C27416T T28144C C28657T

EPI_ISL_430254 MT632553
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S216/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430255 MT632529
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S217/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430257 MT632601
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S219/2020
 C8782T C17747T A17858G C18060T A27525G T28144C

EPI_ISL_430258 MT632516
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S220/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430261 MT632507
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S223/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430263 MT632521
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S225/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430265 MT632534
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S227/2020
 C8782T T11320C C17747T A17858G C18060T G27604A T28144C C28826T

EPI_ISL_430266 MT632513
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S228/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430269 MT632503
 2020-03-20 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S231/2020
 C241T C379A C1059T T2244C C3037T C8160T C14408T A23403G G25563T

EPI_ISL_431117
 2020-03-20 2020-04-29
 India hCoV-19/India/GMC-TC469/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29870M

EPI_ISL_433277
 2020-03-20 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR261/2020
 T490A C3177T C8782T T18736C G19684T C24034T T26729C C26781T C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433278
 2020-03-20 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433279
 2020-03-20 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T A17656G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433283
 2020-03-20 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C12710T G21624A C28854T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_434458
 2020-03-20 2020-04-29
 Greece hCoV-19/Greece/37/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434469
 2020-03-20 2020-04-29
 Greece hCoV-19/Greece/154/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC C28887T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434538
 2020-03-20 2020-04-29
 Costa Rica hCoV-19/Costa Rica/0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_434650
 2020-03-20 2020-04-30
 Sweden hCoV-19/Sweden/20-06071/2020
 C241T G2357A C3037T C14408T A20268G A23403G

EPI_ISL_434652
 2020-03-20 2020-04-30
 Sweden hCoV-19/Sweden/20-06308/2020
 C241T C1059T C3037T C14408T A23403G G23593C G24368T G25563T

EPI_ISL_434685
 2020-03-20 2020-05-01
 United States hCoV-19/USA/MD-HP00024/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434686
 2020-03-20 2020-05-01
 United States hCoV-19/USA/MD-HP00030/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_434807
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH102/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434811
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH108/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434812
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH110/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434821
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH121/2020
 C241T C1059T C3037T G4180T C14408T C17518T A23403G G25563T

EPI_ISL_434822
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH122/2020
 C241T C3037T C14408T A23403G

EPI_ISL_434824
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH124/2020
 C241T C379A C1059T C3037T A10323G C14408T A23403G G25563T

EPI_ISL_434825
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH125/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434827
 2020-03-20 2020-05-01
 United States hCoV-19/USA/TX-HMH127/2020
 C302T T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28657T C28896G C29451T A29700G

EPI_ISL_435403
 2020-03-20 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00066/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_435404
 2020-03-20 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00067/2020
 C241T C1059T C3037T C14408T C21697A A23403G G25563T

EPI_ISL_435419
 2020-03-20 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00055/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_436040
 2020-03-20 2020-05-05
 United States hCoV-19/USA/DC-CDC-9096/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436265
 2020-03-20 2020-05-06
 Spain hCoV-19/Spain/Valencia170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G G28209T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436267
 2020-03-20 2020-05-06
 Spain hCoV-19/Spain/Valencia172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C17639T A20268G A23403G C28638T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436268
 2020-03-20 2020-05-06
 Spain hCoV-19/Spain/Valencia173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436269
 2020-03-20 2020-05-06
 Spain hCoV-19/Spain/Valencia174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T17126C A20268G A23403G G28048T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436719
 2020-03-20 2020-05-07
 Italy hCoV-19/Italy/TE5541/2020
 A39G T42C CG44AT T54Y C241T A538W C3037T A6596R T7396W TG8827WK C14408T G16117K G17427K A23403G G25720K GGG28881AAC AA29902-

EPI_ISL_436720
 2020-03-20 2020-05-07
 Italy hCoV-19/Italy/TE5543/2020
 ATTA1GWKM C48M A55R C241T C3037T G8828K C14408T A23403G GGG28881AAC

EPI_ISL_436721
 2020-03-20 2020-05-07
 Italy hCoV-19/Italy/TE5545/2020
 C241T A538W C697T C3037T T6451Y T7396W TG8827WK T9643Y C14408T A23403G G25186K A25809W G26284K GGG28881AAC A29903-

EPI_ISL_436722
 2020-03-20 2020-05-07
 Italy hCoV-19/Italy/TE5547/2020
 T47K T54Y C241T A538W C697T C3037T C14408T A23403G A25449W GGG28881AAC

EPI_ISL_436723
 2020-03-20 2020-05-07
 Italy hCoV-19/Italy/TE5687/2020
 T51C T54C C241T AC538WM A544R C835Y C3037T G7360K T7396W TG8827WK C14408T G16117K A23403G G24445R G25720K GGG28881RRS AA29902-

EPI_ISL_436829 MT439263
 2020-03-20 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437092
 2020-03-20 2020-05-08
 Latvia hCoV-19/Latvia/013/2020
 C241T C3037T T9727C C14408T C19488T A23403G GGG28881AAC

EPI_ISL_437140 MT412178
 2020-03-20 2020-04-29
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C1380T C3037T C14408T T18384C T21994Y A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437256
 2020-03-20 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0057/2020
 C241T C3037T C14408T G19825T A23403G GGG28881AAC

EPI_ISL_437258
 2020-03-20 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0059/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_437555
 2020-03-20 2020-05-11
 United States hCoV-19/USA/CA-SR0257/2020
 C241T C1059T C1887T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_437599
 2020-03-20 2020-05-11
 United States hCoV-19/USA/CA-SR0178/2020
 C241T C1059T C3037T C6255T C14408T A23403G G23426T G25563T

EPI_ISL_437602 MT447176
 2020-03-20 2020-05-01
 Thailand SARS-CoV-2/human/THA/SI206917-NT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_437874 MT459833
 2020-03-20 2020-05-11
 Greece SARS-CoV-2/human/GRC/43_35679/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C14786T T18126C A23403G T26359A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437959
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0098/2020
 C241T C3037T C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437960
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0099/2020
 C241T C1059T C3037T C14408T G14653T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437961
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0100/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_437962
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0101/2020
 C241T C1059T C3037T T11177Y G11327K C14408T G14653T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438070
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0240/2020
 C8782T T9530K T22521K C26088T T27801C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438071
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0241/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438072
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0242/2020
 C241T C3037T C14408T A20268G T22521K A23403G G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438073
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0243/2020
 C241T C3037T C14408T A20268G T22521K A23403G G29734C AAAAAAAAAA29894-

EPI_ISL_438074
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0244/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438075
 2020-03-20 2020-05-12
 Austria hCoV-19/Austria/CeMM0245/2020
 C241T C3037T G12832A C14408T T22521K A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438154
 2020-03-20 2020-05-12
 United States hCoV-19/USA/WA-S601/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_438237
 2020-03-20 2020-05-12
 United States hCoV-19/USA/DC-HP00080/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_439024
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1455C C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439052
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_439057
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C6696T C11001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439065
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440181
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7341B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C23707T T25202K G26144T C28093Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_441381
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1020FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C25350T

EPI_ISL_441417
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB3D2/2020
 ATT1- ATG1605- C6696T C11001T C29870A

EPI_ISL_441418
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB3E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C6696T C11001T T22729C C25844T C29870A

EPI_ISL_441424
 2020-03-20 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4095T C14408T A23403G G25593K GGG28881AAC C29870A

EPI_ISL_443218
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/126/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443219
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/127/2020
 C241T C3037T G8179T C14408T A23403G G26828K GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443221
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/129/2020
 AAAAAAAAAAAA29892-

EPI_ISL_443222
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/130/2020
 A14172G C14636T G15672T AAAAAAAAAAAA29892-

EPI_ISL_443223
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/131/2020
 C241T C3037T C14408T A23403G G28307K GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443224
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/132/2020
 A8379R C14636T AAAAAAAAAAAA29892-

EPI_ISL_443225
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/133/2020
 A5874G G16827R C20270T A29683T AAAAAAAAAAAA29892-

EPI_ISL_443248
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/156/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443249
 2020-03-20 2020-05-12
 Singapore hCoV-19/Singapore/157/2020
 C241T C3037T A8771W T11638C C13887T C14408T A23403G GGG28881AAC G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_443310
 2020-03-20 2020-05-12
 France hCoV-19/France/GE4420/2020
 C241T C3037T C14408T T14646C C15324T G16741T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_444277 MT479226
 2020-03-20 2020-05-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-24/2020
 AT1- C241T C1314T C3037T G9601A C14408T A23403G G28703T GGG28881AAC C29857T A29903-

EPI_ISL_444278 MT479227
 2020-03-20 2020-05-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-25/2020
 ATTA1- C241T C379A T577A C1059T C3037T T12511C C14408T A23403G G25563T

EPI_ISL_444591
 2020-03-20 2020-05-14
 United States hCoV-19/USA/IL-NM0106/2020
 C241T AAGTCATTT686- T3011C C3037T C8092T C14408T A23403G C27600T

EPI_ISL_444592
 2020-03-20 2020-05-14
 United States hCoV-19/USA/IL-NM0107/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444593
 2020-03-20 2020-05-14
 United States hCoV-19/USA/IL-NM0108/2020
 C8782T G16396T C17747T A17858G C18060T C19017T T28144C

EPI_ISL_444594
 2020-03-20 2020-05-14
 United States hCoV-19/USA/IL-NM0109/2020
 T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_444595
 2020-03-20 2020-05-14
 United States hCoV-19/USA/IL-NM0111/2020
 C241T C3037T A5620G C14408T A23403G

EPI_ISL_444596
 2020-03-20 2020-05-14
 United States hCoV-19/USA/IL-NM0112/2020
 T490A C3177T C8782T C8917T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_444606
 2020-03-20 2020-05-14
 United States hCoV-19/USA/IL-NM0124/2020
 C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A

EPI_ISL_444894
 2020-03-20 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-765/2020
 C241T C1059T C3037T T8788C C14408T G21624T A23403G G25563T G26951A C29272T

EPI_ISL_444895
 2020-03-20 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-767/2020
 C241T C1059T C3037T A4548G C6896T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_444978
 2020-03-20 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH4141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T G922A C3037T C14408T G18462T A20268G A23403G

EPI_ISL_444979
 2020-03-20 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH4488/2020
 C241T C3037T C14408T A20268G A23403G T25485C C28948T

EPI_ISL_445000
 2020-03-20 2020-05-14
 United States hCoV-19/Guam/GU_NHG_03/2020
 ATTAAAGGTTTAT1- C6312A G11083T C13730T C23929T C28311T G29162T

EPI_ISL_445078
 2020-03-20 2020-05-14
 United States hCoV-19/USA/TX_GCID_192000021/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T G17808T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_445288
 2020-03-20 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_7/2020
 ATTAA1- C241T C1059T C3037T C14408T A19033G A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445289
 2020-03-20 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_8/2020
 AT1-C C241T C3037T C8389T C14408T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_445293
 2020-03-20 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_12/2020
 A1- T3A A5T C241T C3037T C14408T A23403G C25350T G27762A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_445301
 2020-03-20 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_16/2020
 A1T -6T C241T C3037T C8389T A12506R C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_445363
 2020-03-20 2020-05-15
 Chile hCoV-19/Chile/Santiago_67/2020
 AT1GGTTTATGATCCTTTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGATAAA A6G G8T T13C C241T G1319A C3037T C8389T C14408T A23403G G25563T G28122T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861T

EPI_ISL_445365
 2020-03-20 2020-05-15
 Chile hCoV-19/Chile/Santiago_69/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447091 MT506539
 2020-03-20 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20294/2020
 C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_447094 MT506540
 2020-03-20 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20297/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_447256
 2020-03-20 2020-05-17
 Taiwan hCoV-19/Taiwan/TSGH-30/2020
 C3037T GT4545TA T4555A T4567A A4580C A4595C T4608A C11916T G16718T T21524G A23403G C24358A T24364A T24376A T24380A C24442A

EPI_ISL_447591
 2020-03-20 2020-05-18
 Taiwan hCoV-19/Taiwan/TSGH-32/2020
 C241T A1072C T4517A C5365G A10176C T10203A A11154C C11300A C12754T C13957G T15492A G17116T G18907T G19509A G23149C A23403G T24286G G24410C GGG28881AAC

EPI_ISL_447837
 2020-03-20 2020-05-18
 Norway hCoV-19/Norway/2200/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_450085
 2020-03-20 2020-05-19
 United States hCoV-19/USA/NY-PV09405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T G7560A C14408T C21221T A23403G G25563T CCACGCGGAGTACGATCGAGT29738- AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450146
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450147
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450148
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450149
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C1917T C3037T C14408T A21188G A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450150
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T G10265A C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450151
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C8782T C17747T A17858G C18060T A24694T T28144C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450152
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C6926T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450153
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C3037T T4579A C14408T G18898T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450154
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450155
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450156
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_450157
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450158
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450159
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T C18877T C21811T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450160
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C619T C1059T C3037T G6662A T13210C C14408T A14912G A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450161
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C10851T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450162
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T T5920C C11916T C14408T A23403G A25102C G25563T G28376T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450163
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G C23415T G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450165
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T C21552T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450167
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T T14988C A22019G A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450168
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T C26625T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450169
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450170
 2020-03-20 2020-05-20
 United States hCoV-19/USA/NY-PV09504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T C28849T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450239
 2020-03-20 2020-05-20
 United States hCoV-19/USA/CA-UCSF-UC47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8318A C14408T A20268G A23403G C26111T C28854T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_450240
 2020-03-20 2020-05-20
 United States hCoV-19/USA/CA-UCSF-UC48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C11916T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_450473 MT499199
 2020-03-20 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1224/2020
 A1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_450723
 2020-03-20 2020-05-22
 Thailand hCoV-19/Thailand/Bangkok-CONI-0018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A895G C2942T G4390T C8782T C9598T G20134T G24047A TTTC27694- G27877T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450770
 2020-03-20 2020-05-22
 United States hCoV-19/USA/MN-MDH-305/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T G10870T C14408T A23403G G25563T A25859G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_450807
 2020-03-20 2020-05-22
 Sweden hCoV-19/Sweden/20-06097/2020
 C241T C3037T C9131T C12213T C14408T A23403G GGG28881AAC

EPI_ISL_450874
 2020-03-20 2020-05-22
 Brazil hCoV-19/Brazil/PA161548-IEC/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_451080
 2020-03-20 2020-05-23
 Australia hCoV-19/Australia/SAP035/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_451404
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC689/2020
 C241T C1059T C3037T C14408T C16616T A23403G G25563T

EPI_ISL_451424
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC709/2020
 C241T C1059T C3037T G12769T C14408T A23403G G25563T G26452T

EPI_ISL_451427
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC712/2020
 C344T A2480G C2558T G11083T A11700G C14805T C17010A C21575T G26144T A27363G

EPI_ISL_451439
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC724/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_451440
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC725/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451444
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC729/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451456
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC741/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_451459
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC744/2020
 C241T C1059T C3037T C4246T C14408T C21005T C21549T A23403G G25563T

EPI_ISL_451462
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC747/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451463
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC748/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451467
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC753/2020
 C241T C1059T C3037T C12400T C14408T A23403G G25563T G28812T

EPI_ISL_451468
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC754/2020
 T490A C3177T C8782T A16812G T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_451470
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC756/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_451471
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC757/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451472
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC758/2020
 C241T C1059T C3037T C11300T C14408T A23403G G25563T C28819T C28849T

EPI_ISL_451476
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC762/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_451477
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC763/2020
 C241T C1059T C3037T C11916T C14408T C14937A C18998T A23403G G25563T G29540A

EPI_ISL_451478
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC764/2020
 C241T C1059T C3037T C14408T A23403G C25469T G25563T T25743C

EPI_ISL_451665
 2020-03-20 2020-05-25
 United States hCoV-19/USA/NY-NYUMC751/2020
 C8078T G11083T C14805T T17247C G26144T T28251G CA28253TC

EPI_ISL_451962
 2020-03-20 2020-05-26
 Italy hCoV-19/Italy/IZSPB_1259/2020
 A1GGCGGGA C241T C3037T C14408T A23403G G28580T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_452336
 2020-03-20 2020-05-27
 China hCoV-19/Beijing/DT-travelUK04/2020
 T13A G1397A A7837T T8022G C9430T G15327T C18029T T19299G G24812T A28305C T28688C G29742T

EPI_ISL_452350
 2020-03-20 2020-05-27
 China hCoV-19/Beijing/DT-travelHU03/2020
 C241T G2229A C3037T T8022G C14408T T20891G A23403G A24950T GGG28881AAC

EPI_ISL_453821
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454092
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C26408T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454093
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11956T C14408T G16558T A23403G C23603T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454094
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29315A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454095
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T G18816T C20148T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454098
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G23954A G24077T C29555T GGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29736-

EPI_ISL_454100
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A20268G A23403G CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454103
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C26408T GGG28881AAC ATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29677-

EPI_ISL_454129
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454159
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G5194T T11698C C14408T A20268G A23403G C25672T C26882T G26951T C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454236
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C11139T C12784T C14805T G26144T C29409T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454237
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C12439T C14408T A19291G A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454239
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- TGGTCATGTTATGGT508- A2480G C2558T G11083T C14805T G22014T G26144T C27600T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454240
 2020-03-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454463
 2020-03-20 2020-05-28
 Sweden hCoV-19/Sweden/20-08091/2020
 C241T C3037T G4255T C14408T T16456G C20051T A23403G A26530G

EPI_ISL_454588
 2020-03-20 2020-05-28
 Croatia hCoV-19/Croatia/1761_Dubrovnik/2020
 ATTAAA1- G1440A G2891A C14408T A23403G G25593C C26456Y TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_454789
 2020-03-20 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordBrabant_10040/2020
 ATTAAA1- C241T C3037T C14408T A23403G A24862G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_454950
 2020-03-20 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-196/2020
 C9924A G16117C C21707T

EPI_ISL_454963
 2020-03-20 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-214/2020
 

EPI_ISL_454967
 2020-03-20 2020-05-29
 China hCoV-19/Wuhan/HB-WH5-222/2020
 G26144T

EPI_ISL_455164
 2020-03-20 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455396
 2020-03-20 2020-05-29
 China hCoV-19/Wuhan/HB-WH6-243/2020
 C1238A GCTTTTGGCTTAGTTGCAGAGTG7223- C27509A

EPI_ISL_455589
 2020-03-20 2020-06-01
 Thailand hCoV-19/Thailand/Nonthaburi_3481/2020
 A895G A2524G C2942T A3778G G4390T C8782T T8987A C9598T G20134T G24047A G27877T T28144C AAAA29900-

EPI_ISL_455591
 2020-03-20 2020-06-01
 Thailand hCoV-19/Thailand/Nonthaburi_3479/2020
 A895G C2942T C3768T G4390T C8782T C9598T G20134T G24047A C27149T T27704C G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_455592
 2020-03-20 2020-06-01
 Thailand hCoV-19/Thailand/Nonthaburi_3478/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_455593
 2020-03-20 2020-06-01
 Thailand hCoV-19/Thailand/Nonthaburi_3472/2020
 C241T T1294C C3037T C14408T A23403G GGG28881AAC -29686C AAAAAAAAAAAA29892-

EPI_ISL_455735
 2020-03-20 2020-06-01
 Spain hCoV-19/Spain/Valencia_h2647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C527T C8782T A18978G C26088T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_456056
 2020-03-20 2020-06-01
 United States hCoV-19/USA/NY-NYUMC820/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_456146
 2020-03-20 2020-06-02
 Colombia hCoV-19/Colombia/INS-82457/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_456169
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0901/2020
 G11083T C14805T G26144T G28842T

EPI_ISL_456170
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR0914/2020
 C241T C1059T C3037T T4214C C14408T A23403G G25563T G25906T G29744A

EPI_ISL_456182
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1016/2020
 C8782T C17747T A17858G C18060T G19072T A24694T T28144C

EPI_ISL_456183
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1018/2020
 C241T C3037T C14408T C17518T A23403G GGG28881AAC

EPI_ISL_456184
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1019/2020
 G1440A G2891A C10507T A28675T

EPI_ISL_456185
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1020/2020
 G1440A G2891A C10507T A28675T

EPI_ISL_456186
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1022/2020
 G1440A G2891A C10507T A28675T

EPI_ISL_456193
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1115/2020
 A1904G C5826T C8090T C10789T

EPI_ISL_456194
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1133/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_456200
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1275/2020
 T490A C3177T C8782T T18736C C19386T G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_456201
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1276/2020
 C3096T T4699C G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G G28881A A29731G

EPI_ISL_456202
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1277/2020
 C241T C1594T C3037T C11109T C14408T A23403G G25563T

EPI_ISL_456203
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1278/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_456205
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1280/2020
 C3096T T4699C T6001C G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G G28881A A29731G

EPI_ISL_456206
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1281/2020
 C241T C1059T C3037T G11083T C14408T A23403G C23453T G25563T G29383T

EPI_ISL_456213
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1297/2020
 C5000A C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_456214
 2020-03-20 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1298/2020
 C241T C1059T A2018G C3037T C14408T A23403G G25563T

EPI_ISL_457790 MT646086
 2020-03-20 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00017/2020
 C241T T833C C1059T C3037T A13660C C14408T A23403G G25563T C27964T

EPI_ISL_457798 MT646070
 2020-03-20 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00055/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T

EPI_ISL_457833
 2020-03-20 2020-06-02
 Kenya hCoV-19/Kenya/NIC_187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2937T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_457986
 2020-03-20 2020-06-02
 Oman hCoV-19/Oman/RESP-20-3700/2020
 G19509A

EPI_ISL_457987
 2020-03-20 2020-06-02
 Oman hCoV-19/Oman/RESP-20-4028/2020
 G26144T

EPI_ISL_458228
 2020-03-20 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0320258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C17304T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458232
 2020-03-20 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0320262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C11956T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459972
 2020-03-20 2020-06-05
 Morocco hCoV-19/Morocco/6894/2020
 C241T C1684T C3037T G6404T C8208T C14408T C15324T G22363T A23403G C29362T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_459973
 2020-03-20 2020-06-05
 Morocco hCoV-19/Morocco/6895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18263T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459974
 2020-03-20 2020-06-05
 Morocco hCoV-19/Morocco/6896/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1684T C3037T G6404T C8208T C14408T C15324T G22363T A23403G C29362T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_460338 MT520413
 2020-03-20 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00551/2020
 ATTAAAGGTTTA1- G271A C8782T C17747T A17858G C18060T C21614T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460349 MT520424
 2020-03-20 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00553/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2263A C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460399 MT520474
 2020-03-20 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C2416T C3037T T5218C C12789T C14408T A23403G G25563T G26233T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460406 MT520481
 2020-03-20 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00684/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460668
 2020-03-20 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C29548A G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460672
 2020-03-20 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460780
 2020-03-20 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25714T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460781
 2020-03-20 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461031
 2020-03-20 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10956T A11438G C14408T A23403G C27046T GTTCTA28090- GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461148
 2020-03-20 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- A4822C C9073T C14585T C17410T C26642T C28253T C29025T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462162
 2020-03-20 2020-06-08
 Belgium hCoV-19/Belgium/VRS-0320308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3340C C14408T T23287C A23403G A23870G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462286
 2020-03-20 2020-06-08
 Singapore hCoV-19/Singapore/168/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_462389
 2020-03-20 2020-06-08
 Singapore hCoV-19/Singapore/271/2020
 C241T C3037T G4285R C14408T C23029Y A23403G GGG28881AAC A29707R AAAAAAAAAAAA29892-

EPI_ISL_462410
 2020-03-20 2020-06-08
 Singapore hCoV-19/Singapore/292/2020
 C241T C3037T C14408T A23403G G28378K GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_462415
 2020-03-20 2020-06-08
 Singapore hCoV-19/Singapore/297/2020
 A895G C2942T G4390T C8782T C9598T G14187A G20134T G24047A T28144C AAAAAAAAAAAA29892-

EPI_ISL_462453
 2020-03-20 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7346/2020
 ATTAAAGGTTT1- C241T C3037T C10336T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462454
 2020-03-20 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7347/2020
 ATTAAAG1- C241T C3037T C10336T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462455
 2020-03-20 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7348/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462456
 2020-03-20 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7349/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_462457
 2020-03-20 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7350/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_464115
 2020-03-20 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_04/2020
 ATG1605- T29492C

EPI_ISL_464117
 2020-03-20 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_06/2020
 G2198A A2480G C2558T G11083T C14805T C15952T C17977T G26144T

EPI_ISL_468394 MT628130
 2020-03-20 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T A2018G C3037T C4890Y C14408T G18021K A23403G G25563T G29195K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_468395 MT628131
 2020-03-20 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1423/2020
 C241T C3037T C5467T C8389T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468396 MT628132
 2020-03-20 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1424/2020
 ATTA1- C241T C3037T C5467T C8389T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468397 MT628133
 2020-03-20 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T A2018G C3037T C7162Y C14408T C22281Y A23403G G25563T G25687S TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_468979
 2020-03-20 2020-06-17
 Spain hCoV-19/Spain/Palma2513/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_468991
 2020-03-20 2020-06-17
 Spain hCoV-19/Spain/Palma2520/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_469019
 2020-03-20 2020-06-17
 Italy hCoV-19/Italy/IZSPB_804/2020
 A1CCCCGGA C241T C1513T C3037T C14408T C19687T A23403G G29348T C29836A GC29853AA G29861A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_469021
 2020-03-20 2020-06-17
 Italy hCoV-19/Italy/IZSPB_813/2020
 A1CCCCCGA C241T C3037T T4092C C14408T A23403G G29861T A29876G AAAAAAAAAAAAAAAAAAAAAAAAAA29878C

EPI_ISL_469022
 2020-03-20 2020-06-17
 Italy hCoV-19/Italy/IZSPB_847/2020
 A1CCCAACACCGA C241T C3037T T4092C C14408T A23403G -29904AAAAAAAAAAAA

EPI_ISL_469229
 2020-03-20 2020-06-18
 Canada hCoV-19/Canada/NL_87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_470845
 2020-03-20 2020-06-19
 Australia hCoV-19/Australia/WA28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470858
 2020-03-20 2020-06-19
 Australia hCoV-19/Australia/WA41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T C17104T A20268G A23403G C29200T G29734C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470868
 2020-03-20 2020-06-19
 Australia hCoV-19/Australia/WA51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T ATAGTT6510- C8140T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_470869
 2020-03-20 2020-06-19
 Australia hCoV-19/Australia/WA52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470900
 2020-03-20 2020-06-19
 Russia hCoV-19/Russia/Moscow_PMVL-7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471253
 2020-03-20 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471546
 2020-03-20 2020-06-22
 Brazil hCoV-19/Brazil/SP-537/2020
 C241T C1059Y C1457Y C3037T C12053T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_475073
 2020-03-20 2020-06-23
 Belgium hCoV-19/Belgium/UGent-113/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_475326
 2020-03-20 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D10E8/2020
 C1457T A2480G C2558T G11083T C14805T C25207T G26144T

EPI_ISL_475327
 2020-03-20 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D10F7/2020
 C1457T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_475328
 2020-03-20 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D1103/2020
 C1457T A2480G C2558T T4369A G11083T C14805T G26144T

EPI_ISL_475456
 2020-03-20 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CD4B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5206T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475536
 2020-03-20 2020-06-23
 Sweden hCoV-19/Sweden/20-06070/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_475957
 2020-03-20 2020-06-25
 Singapore hCoV-19/Singapore/426/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_475959
 2020-03-20 2020-06-25
 Singapore hCoV-19/Singapore/428/2020
 C241T C1059T T2461A C3037T G14290T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_475960
 2020-03-20 2020-06-25
 Singapore hCoV-19/Singapore/429/2020
 C241T C3037T C14408T G18803T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_475968
 2020-03-20 2020-06-25
 Singapore hCoV-19/Singapore/437/2020
 C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_475969
 2020-03-20 2020-06-25
 Singapore hCoV-19/Singapore/438/2020
 C241T C1059T C1555Y C3037T T6394C C10319T C14408T G17562K A23403G G25563T C27964T AAAAAAAAAAAA29892-

EPI_ISL_476773
 2020-03-20 2020-06-25
 United States hCoV-19/USA/CA-CZB-1756/2020
 ATTAAAGGTTT1- C27874T

EPI_ISL_476818
 2020-03-20 2020-06-26
 Singapore hCoV-19/Singapore/455nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5432A C14408T A23403G G25563T G27715T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477174
 2020-03-20 2020-06-29
 Singapore hCoV-19/Singapore/451nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477198
 2020-03-20 2020-06-29
 Italy hCoV-19/Italy/IZSPB_2627/2020
 A1CCTCCCCGA C241T C2434T C3037T C14408T C18029T A23403G GGG28881AAC -29904AAAAAA

EPI_ISL_477202
 2020-03-20 2020-06-29
 Italy hCoV-19/Italy/IZSPB_854/2020
 A1CCACCGA C241T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_477616
 2020-03-20 2020-06-29
 Hungary hCoV-19/Hungary/US-1816lc/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18377T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477617
 2020-03-20 2020-06-29
 Hungary hCoV-19/Hungary/US-1819lc/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G25483A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477691
 2020-03-20 2020-06-29
 United States hCoV-19/USA/WA-UW-1624/2020
 ATTAAAG1- C36T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_477692
 2020-03-20 2020-06-29
 United States hCoV-19/USA/WA-UW-1630/2020
 ATTAAAGGTT1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_477693
 2020-03-20 2020-06-29
 United States hCoV-19/USA/WA-UW-1631/2020
 ATTAAA1- C36T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_477702
 2020-03-20 2020-06-29
 United States hCoV-19/USA/WA-UW-2062/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_478052
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- GTT521- G1148T A1515G C9223T T9336- G11083T C14805T T17247C G26144T G28904T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478546
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/England/NORT-284406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T C10775A G11083T C14805T T16154C T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478547
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/England/NORT-284415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478548
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/England/NORT-284424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17118T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478549
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/England/NORT-284433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2695T C3037T C14408T A23403G C27804T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478550
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/England/NORT-284442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C16887T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478551
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/England/NORT-28449D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T T10480C G11083T C14805T T17742C T26130C G26144T C27559T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479226
 2020-03-20 2020-06-30
 United Kingdom hCoV-19/England/SHEF-C730C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T G29027T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479869
 2020-03-20 2020-07-01
 Japan hCoV-19/Japan/PG-0158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T4402C G5062T C8782T G9479T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479902
 2020-03-20 2020-07-01
 Japan hCoV-19/Japan/PG-0197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_479911
 2020-03-20 2020-07-01
 Japan hCoV-19/Japan/PG-0211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A20268G A23403G C28677T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479981
 2020-03-20 2020-07-01
 Japan hCoV-19/Japan/PG-0306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480035
 2020-03-20 2020-07-01
 Japan hCoV-19/Japan/PG-0365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T T1570C C1722T C3037T C14408T T15132C A23403G A26530G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_482325
 2020-03-20 2020-07-03
 United States hCoV-19/USA/OR-PROV-043/2020
 G29711T

EPI_ISL_482326
 2020-03-20 2020-07-03
 United States hCoV-19/USA/OR-PROV-044/2020
 G11083T C14805T G26144T

EPI_ISL_483004
 2020-03-20 2020-07-06
 United States hCoV-19/USA/MN-MDH-1283/2020
 AT1- C241T C1059T C3037T C13860T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483005
 2020-03-20 2020-07-06
 United States hCoV-19/USA/MN-MDH-1284/2020
 ATTAAA1- C1238T C8782T A17858G C18060T T28144C T28924C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_483006
 2020-03-20 2020-07-06
 United States hCoV-19/USA/MN-MDH-1285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G G25644T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_483721
 2020-03-20 2020-07-08
 Israel hCoV-19/Israel/n14274/2020
 G1440A T2506C G2891A C5147T A5163C A8415T C8480T AT9874- A10844G A13755- G13846- G13856T T13935C A19526T C20195T TG21246- A21311- A27669G C28603T C29144T

EPI_ISL_484091
 2020-03-20 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DCB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C7851T C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484093
 2020-03-20 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DCD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T G29773T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484095
 2020-03-20 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DD01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T C3037T C14408T A22481T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484096
 2020-03-20 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DD10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17944T A23403G G25951T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486429 MT738173
 2020-03-20 2020-07-09
 Brazil SARS-CoV-2/human/BRA/HIAE-SP04/2020
 C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_486653
 2020-03-20 2020-07-10
 Italy hCoV-19/Italy/Hsacco-16/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T G17334T A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_488580
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-28448E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T T25202K G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488600
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-284891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C850T C6449T C8782T G13617T T25202K C26088T G26951T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488674
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-284460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5724T G11083T C14805T T18083C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488743
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-284451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G6653A C9170T G11083T C14805T G26144T G28001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488752
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-2818EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G T7717Y C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488755
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-281876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5646T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488769
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-281858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C593T T1339C A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488783
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-2818A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C850T C6449T C8782T G13617T C26088T G26951T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488793
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-28183A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A C1612Y G2891A C10507T G27906T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488798
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-2817A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488804
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-281849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A17799G C19170T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489643
 2020-03-20 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-16FB58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1156T ATG1605- C12710T C23248T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490999
 2020-03-20 2020-07-15
 United States hCoV-19/USA/MA-UW-MAYO44/2020
 ATT1- A4W C36T C241T C1059T C3037T C4246T C14408T G18155T A23403G G24872T G25563T G26466A -29904AAAAAA

EPI_ISL_491094
 2020-03-20 2020-07-16
 Czech Republic hCoV-19/Czech Republic/NRL_4105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491095
 2020-03-20 2020-07-16
 Czech Republic hCoV-19/Czech Republic/NRL_4253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7011T C12534T C14408T C22432T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491452
 2020-03-20 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0041/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T A23403G G25563T -29831C CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_491455
 2020-03-20 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0044/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_492109
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP119/2020
 ATTA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492138
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP373/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492139
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP374/2020
 AT1- C241T C1059T C3037T C14408T C18928T A23403G G25455T G25563T C26801T CACCGAGGCCACGCG29730-

EPI_ISL_492145
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP380/2020
 ATTA1- C6312A G11083T C13730T C14117A C23929T C28311T

EPI_ISL_492151
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP386/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T G8303A C14408T A23403G GGG28881AAC

EPI_ISL_492156
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP391/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492157
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP392/2020
 ATTA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492162
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP397/2020
 ATTAAAGGTTTATACCT1- C241T C1489T C3037T C14408T A20268G A23403G

EPI_ISL_492165
 2020-03-20 2020-07-20
 Australia hCoV-19/Australia/SAP400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C4540T A8651C C8782T T9477A G11083T C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492894
 2020-03-20 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C5E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493202
 2020-03-20 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-007/2020
 ATTAAAGGTTTATACC1- A2480G C2558T C6675T G11083T T12532C C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_494618
 2020-03-20 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1462/2020
 ATTAAAGGTTTAT1- G11083T C14805T C18086T G23012C G26144T G28842T

EPI_ISL_494619
 2020-03-20 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_494721
 2020-03-20 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1660/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_494729
 2020-03-20 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1669/2020
 ATTAAAGG1- C241T C379A C1059T C3037T G4657A G6170C C14408T G21578T A23403G G25563T

EPI_ISL_494734
 2020-03-20 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1674/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_494970
 2020-03-20 2020-07-22
 Canada hCoV-19/Canada/LTRI-18/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495355 MT791891
 2020-03-20 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0449/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_497775
 2020-03-20 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1666C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497846
 2020-03-20 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498034
 2020-03-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2133/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_498035
 2020-03-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2134/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_498038
 2020-03-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2137/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29705T

EPI_ISL_498039
 2020-03-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2138/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29705T

EPI_ISL_498040
 2020-03-20 2020-07-26
 South Korea hCoV-19/Korea/KCDC2139/2020
 A1- C241T C3037T C14408T A23403G G25429T

EPI_ISL_499641
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A587E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T592C G1440A G2891R C4668T C26447T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499642
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A58BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499819
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- G12518A G15025A C20270T A29683W

EPI_ISL_499822
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A55E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C11355T C20270T G21451A C29095T A29683W

EPI_ISL_499823
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A56FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C11355T C20270T G21451A C29095T A29683W TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500119
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T C21058T A23403G C24134T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500121
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A54C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C16289T A19682G A23403G G25429T

EPI_ISL_500125
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_500131
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A55D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1593T C3037T C14408T A23403G T24127C C29741T

EPI_ISL_500136
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2285G C3037T G11083T C14408T C19170T G19509A A23403G G26116T GGG28881AAC

EPI_ISL_500140
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A56CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A7479G G11083T C14805T T17247C C25572T T25852A G26144T C28887T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500147
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T1910A A2480G C2558T T5338C A7259G G11083T C14805T T19119C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500155
 2020-03-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T T9630C G11083T C14805T C17010A G26144T

EPI_ISL_500430
 2020-03-20 2020-07-28
 Spain hCoV-19/Spain/COV005998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T A4501G C10954T T13006C C14408T G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_500431
 2020-03-20 2020-07-28
 Spain hCoV-19/Spain/COV005999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C8502Y T13006C C14408T G17302T A23403G C23502Y G25563T C25688T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500506
 2020-03-20 2020-07-29
 United States hCoV-19/USA/NY-UW-MAYO27/2020
 ATTAAAGGTT1- AAC34TTT C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_500507
 2020-03-20 2020-07-29
 United States hCoV-19/USA/NY-UW-MAYO28/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_500601
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500604
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6723T C14408T A23403G T26094C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500605
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500606
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T A15192C C17747T A17858G C18060T C21904T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500612
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T C28657T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500613
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500614
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500615
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500617
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C14805T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500642
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500651
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500654
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T GATATGGTT11267- C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500657
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500658
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C19185T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500659
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500660
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500669
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500670
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500671
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500672
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500673
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500674
 2020-03-20 2020-07-29
 Australia hCoV-19/Australia/NSW2226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501074
 2020-03-20 2020-07-30
 United States hCoV-19/USA/GA-UW-MAYO63/2020
 ATTAAAGGTTTATACCTTCCCAG1- A27C ACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG31- A136G C140G A143T G174B T490A C3177T C8782T C12924T T18736C A23503G C24034T T26729C A26793T C27635T G28077C T28144C C28824T A29700G T29765A A29771V TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_507015 MT820466
 2020-03-20 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507087
 2020-03-20 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A G6463T A24178G A27669G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507692
 2020-03-20 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C14408T A23403G G25563T C27476Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507693
 2020-03-20 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C2416Y C3037T C14408T A23403G G25563T C27847Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507696
 2020-03-20 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T C25976A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507701
 2020-03-20 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C7765T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_507706
 2020-03-20 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A5011M C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_508131
 2020-03-20 2020-08-04
 Australia hCoV-19/Australia/SAP440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_508135
 2020-03-20 2020-08-04
 Australia hCoV-19/Australia/SAP444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C14805T G26144T C26606T G28842T A29903-

EPI_ISL_508136
 2020-03-20 2020-08-04
 Australia hCoV-19/Australia/SAP445/2020
 AT1- C241T C1489T C3037T C14408T A20268G A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_508137
 2020-03-20 2020-08-04
 Australia hCoV-19/Australia/SAP446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_508138
 2020-03-20 2020-08-04
 Australia hCoV-19/Australia/SAP447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_508780 MT834622
 2020-03-20 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0576/2020
 ATTAAA1- C241T C601T C3037T C8389T C14408T G21399A A23403G G25563T G27915A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508788 MT834632
 2020-03-20 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0584/2020
 AT1- T490A C3177T C8782T C9565T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_508862
 2020-03-20 2020-08-04
 Madagascar hCoV-19/Madagascar/Antananarivo-01650/2020
 ATTAAAGGTTT1- C241T C2416T C3037T C5884T C14408T A20712R T20717K A23403R G25563T T29360K C29364M AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_509492
 2020-03-20 2020-08-05
 Australia hCoV-19/Australia/NSW2029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509497
 2020-03-20 2020-08-05
 Australia hCoV-19/Australia/NSW2071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509506
 2020-03-20 2020-08-05
 Australia hCoV-19/Australia/NSW2166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509507
 2020-03-20 2020-08-05
 Australia hCoV-19/Australia/NSW2177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509509
 2020-03-20 2020-08-05
 Australia hCoV-19/Australia/NSW2182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509511
 2020-03-20 2020-08-05
 Australia hCoV-19/Australia/NSW2232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509520
 2020-03-20 2020-08-05
 Australia hCoV-19/Australia/NSW2318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509702 MT844036
 2020-03-20 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1235/2020
 C241T C3037T C11379T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509711 MT844023
 2020-03-20 2020-08-05
 Belize SARS-CoV-2/human/BLZ/CDC-6840/2020
 C241T C313T C3037T C14408T A23403G G25456T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509741 MT846445
 2020-03-20 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0683/2020
 A1- C8782T C17747T A17858G C18060T G19072T A24694T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_511036
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0777a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511066
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511067
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511069
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511070
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511071
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511072
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511073
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511074
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511076
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511077
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11663T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511079
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11663T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511080
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511082
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29025T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511083
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T721C C3037T C14408T A23403G C25549T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511147
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3267T C5055T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511148
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G16853T A23403G GGG28881AAC A29396G G29449T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511149
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T G11527T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511150
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G11527T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511151
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T T21864C A23403G GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511152
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT0894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511231
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT1270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T C16733T C21621T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511232
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT1271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T A17715T G26144T G28917T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511233
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT1272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511433
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT1474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T A13712G C14408T A20676G A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511458
 2020-03-20 2020-08-07
 Portugal hCoV-19/Portugal/PT1499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29013T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511685
 2020-03-20 2020-08-08
 Portugal hCoV-19/Portugal/PT1138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G C22088T A23403G C25824T A29086T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511716
 2020-03-20 2020-08-08
 Portugal hCoV-19/Portugal/PT1170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511717
 2020-03-20 2020-08-08
 Portugal hCoV-19/Portugal/PT1171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C6636T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512409
 2020-03-20 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D2032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5340T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512410
 2020-03-20 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D2041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512411
 2020-03-20 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D206F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512655
 2020-03-20 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C8782T GATATGGTT11267- C17747T A17858G C18060T A24694T T28144C CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_513299 MT704817
 2020-03-20 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_2ZK/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_513471 MT886345
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C2416T C3037T G6877T C10369T C14408T G19648T A23403G C23565T G25563T G26233T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513472 MT886346
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C241T C313T C3037T A11348G C14408T A23403G G28690T GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513478 MT886352
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTG1- C241T C3037T C10376T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513483 MT886357
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C8782T C17747T A17858G C18060T T28144C C28708T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513493 MT886368
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C203T G11083T C14805T T17247C C26058T G26144T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513494 MT886369
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- G1440A G2891A C7011T G11083T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513499 MT886375
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGG1- C241T C3037T C14408T T22092A C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513506 MT886382
 2020-03-20 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514438 MT886367
 2020-03-20 2020-08-12
 United States SARS-CoV-2/human/USA/ME-HETL-J0082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C8782T C17747T A17858G C18060T A24694T T28144C A28254- AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514439 MT886371
 2020-03-20 2020-08-12
 United States SARS-CoV-2/human/USA/ME-HETL-J0086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C8782T C17747T A17858G C18060T A24694T T28144C A28254- AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514485
 2020-03-20 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D2014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514566
 2020-03-20 2020-08-17
 United Kingdom hCoV-19/Wales/PHWC-169A15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6990T C14408T A23403G C29200T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515316
 2020-03-20 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0030/2020
 ATTA1- C6312A C13730T C28311T

EPI_ISL_515548
 2020-03-20 2020-08-19
 Brazil hCoV-19/Brazil/SP-634/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12053T C14408T T14501G A23403G G25088T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_515896
 2020-03-20 2020-08-20
 United States hCoV-19/USA/CA-CDPH003/2020
 AT1- G29711T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515906
 2020-03-20 2020-08-20
 United States hCoV-19/USA/CA-CDPH013/2020
 ATT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_516273
 2020-03-20 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21546/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T C5211Y C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518890 MT920030
 2020-03-20 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T G11083T C14805T C17010A C21575T G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_523473
 2020-03-20 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17126C A20268G A23403G C28546A C29733T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523474
 2020-03-20 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523950
 2020-03-20 2020-08-27
 Germany hCoV-19/Germany/NW-79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T28172C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527009
 2020-03-20 2020-09-03
 Australia hCoV-19/Australia/NSW2193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C G29742T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528242
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29730-

EPI_ISL_528243
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C2983T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528244
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G G28881T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528245
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3305G A3904G C9110T C14408T C15324T A23403G T23489C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528246
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42199737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G G28798A TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528247
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C9319T G11083T C14805T T17247C G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528249
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528251
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528252
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528254
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G C29367T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528255
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528257
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C19901T A23403G G28690T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528258
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C13994T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528259
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T T5941A C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528261
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A2590G C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528262
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42199957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3801G C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528263
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528264
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G C25658T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528265
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42200078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G C25658T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528270
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C832T C3037T C14408T C15324T C20133T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528271
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528272
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A18812G A20268G A23403G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528274
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528277
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7735T C14408T C15324T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528279
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42200964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528280
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42200965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7735T C14408T C15324T A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528281
 2020-03-20 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2708T C3037T C14408T G20069T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_529068
 2020-03-20 2020-09-10
 Peru hCoV-19/Peru/LIM-UPCH-0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1072G C3037T C4002T G9856T G10097A C13536T C14408T G19962T A22330T A23403G C23731T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530041
 2020-03-20 2020-09-10
 Spain hCoV-19/Spain/MD-LP112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16744A C18881T A19409G A20268G G21190A A23403G C24023T T26301G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530261
 2020-03-20 2020-09-11
 Australia hCoV-19/Australia/QLD981/2020/P1
 A1- G957A C8782T G11083T C17747T A17858G C18060T T28144C AAAAAAAAAA29894-

EPI_ISL_530348
 2020-03-20 2020-09-11
 Czech Republic hCoV-19/Czech Republic/NRL_4182/20/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530349
 2020-03-20 2020-09-11
 Czech Republic hCoV-19/Czech Republic/NRL_4262/20/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C23423T C26645T C28651T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_534827
 2020-03-20 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2F2E/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_534854
 2020-03-20 2020-09-14
 United Kingdom hCoV-19/England/OXON-B337C/2020
 A1515G C9223T C10277T G11083T C14805T T17247C G25906T G26144T

EPI_ISL_534879
 2020-03-20 2020-09-14
 United Kingdom hCoV-19/England/OXON-B36DD/2020
 A1515G A8121G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_534902
 2020-03-20 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3B38/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_535021
 2020-03-20 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4EC5/2020
 A1515G C9223T G11083T C14805T T17247C G26144T AAAAA29899-

EPI_ISL_535024
 2020-03-20 2020-09-14
 United Kingdom hCoV-19/England/PORT-2D2005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535874
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00228636/2020
 ATTAA1- C241T C3037T C14408T C15324T A23403G C25047Y G28690T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535875
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00228687/2020
 ATTAAA1- C241T C3037T C14408T A23403G C25613T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535876
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00228787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G C25904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535879
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00228862/2020
 ATTAAA1- C241T T1918C C3037T C14408T C18877T A23403G G25563T G25906T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535881
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00228950/2020
 ATTAAA1- C241T C3037T C5730T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535882
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00228954/2020
 ATTA1- C884T G1397A G2635A C2710T A4386G G8653T G10610T G11083T T28688C G29742T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535884
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C6040T G11083T C14805T G26144T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535886
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229172/2020
 ATTAAA1- C241T C3037T C14408T A23403G C23557Y GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535887
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229212/2020
 ATTAAA1- C241T C1059T C3037T A9848G G10354T C14408T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535888
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229288/2020
 ATTAAA1- C241T C3037T C12488T C14408T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535889
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229319/2020
 ATTAAA1- C8782T G17280T C17747T A17858G C18060T A24694T T28144C TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535890
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229326/2020
 ATTAAA1- C241T C1059T A2419G G2808A C3037T C14408T A23403G G25563T A26433G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535892
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T A28207T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535893
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G3476A C5467T G9479T A9514G G11083T T19026A G26720C T28688C T28835C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535896
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25776T G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535899
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G285A C3037T C14408T A23403G A27372T C27494T C29284T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535901
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229727/2020
 ATTAAA1- C241T C3037T G8017T G14229A C14408T G21746C A23403G G29628T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535903
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535904
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14422A A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535953
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535963
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231805/2020
 ATTAAA1- C241T C3037T C14408T G21746C A23403G G28739T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535964
 2020-03-20 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T G27754T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536549
 2020-03-20 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-156/2020
 ATTA1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_536557
 2020-03-20 2020-09-16
 Peru hCoV-19/Peru/ARE-INS-164/2020
 ATTAAAG1- C241T GTCATGTTA510- C3037T C14408T A20268G A23403G

EPI_ISL_536558
 2020-03-20 2020-09-16
 Peru hCoV-19/Peru/ARE-INS-165/2020
 ATTAAAG1- C241T C884T C3037T C5869T C14408T A23403G G25429T

EPI_ISL_536559
 2020-03-20 2020-09-16
 Peru hCoV-19/Peru/ICA-INS-166/2020
 ATTAAAG1- C241T C3037T G10265A G11535T C14408T A23403G GGG28881AAC A29903-

EPI_ISL_537431
 2020-03-20 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T A2275C C3037T T13006C C14408T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537439
 2020-03-20 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537446
 2020-03-20 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G G29427K C29743A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537447
 2020-03-20 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537840
 2020-03-20 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T A14870G G17302T A23403G G25563T C25688T C28121T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538441
 2020-03-20 2020-09-17
 Singapore hCoV-19/Singapore/173nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538442
 2020-03-20 2020-09-17
 Singapore hCoV-19/Singapore/427nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A23403G A25575C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538449
 2020-03-20 2020-09-17
 Singapore hCoV-19/Singapore/129nan/2020
 CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_539001
 2020-03-20 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1302T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539131
 2020-03-20 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15958T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539552
 2020-03-20 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-209811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C11067T C12400T C14408T A23403G G25563T GTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29747-

EPI_ISL_540987
 2020-03-20 2020-09-22
 Peru hCoV-19/Peru/ARE-UPCH-0110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A20268G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_540988
 2020-03-20 2020-09-22
 Peru hCoV-19/Peru/ARE-UPCH-0111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C884T C3037T C5869T C14408T A23403G G25429T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_541343
 2020-03-20 2020-09-22
 Brazil hCoV-19/Brazil/PR-5620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12053T C14408T A23403G G25088T G25654T GGG28881AAC GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541373
 2020-03-20 2020-09-22
 Brazil hCoV-19/Brazil/SE-6530/2020
 ATTAAAGGTTTATACCTTCC1- C241T C2716T C3037T C14408T C14786T A23403G GGG28881AAC GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_547448
 2020-03-20 2020-09-24
 Netherlands hCoV-19/Aruba/AW-RIVM-10115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T G26211T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548368
 2020-03-20 2020-09-26
 United States hCoV-19/USA/CA-CZB-3639/2020
 CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548996
 2020-03-20 2020-09-28
 Singapore hCoV-19/Singapore/988/2020
 ATTAAAGGTTTATACC1- A2480G C2558T G11083T C14805T C16443T G26144T AAAAAAAAAAAA29892-

EPI_ISL_561365
 2020-03-20 2020-09-30
 United Kingdom hCoV-19/England/GSTT-5496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1973T A2480G C2558T A8537G G11083T C14805T C25339T G26144T T26732G TCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCT27576- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565981
 2020-03-20 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_568557
 2020-03-20 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G3179A C6385T C6982T C8782T T28144C G29737R TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_568584
 2020-03-20 2020-10-02
 Thailand hCoV-19/Thailand/Bangkok-CONI-0220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_568910
 2020-03-20 2020-10-02
 France hCoV-19/France/IHU-0646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G G25440T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568911
 2020-03-20 2020-10-02
 France hCoV-19/France/IHU-0647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T C26907A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568915
 2020-03-20 2020-10-02
 France hCoV-19/France/IHU-0651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C583T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568916
 2020-03-20 2020-10-02
 France hCoV-19/France/IHU-0653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T G16377T A23403G C25207T G25563T T25911C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569469
 2020-03-20 2020-10-02
 France hCoV-19/France/IHU-0347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C10681T C14408T C18175T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT350269
 2020-03-20 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0797/2020
 C8782T T11320C C17747T A17858G C18060T C27416T T28144C C28657T AAAAAAAAAAAAAAAAAAAAA29883-

MT350271
 2020-03-20 2020-04-16
 United States SARS-CoV-2/human/USA/USA-WA_0457/2020
 C8782T T11320C C17747T A17858G C18060T G27604A T28144C C28826T AAAAAAAAAAAAAAAAAAAAA29883-

MT380731
 2020-03-20 2020-04-24
 United States SARS-CoV-2/human/USA/DC-CDC-9096/2020
 C241T C1059T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT415323
 2020-03-20 2020-04-30
 India SARS-CoV-2/human/IND/GMCTC469/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G GGG28881AAC C29870M

MT459839
 2020-03-20 2020-05-11
 Greece SARS-CoV-2/human/GRC/37_35684/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459867
 2020-03-20 2020-05-11
 Greece SARS-CoV-2/human/GRC/154_35632/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC C28887T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459987
 2020-03-20 2020-05-12
 United States SARS-CoV-2/human/GUM/GU-NHG-03/2020
 ATTAAAGGTTTAT1- C6312A G11083T C13730T C23929T C28311T G29162T

MT509455
 2020-03-20 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509456
 2020-03-20 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509477
 2020-03-20 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT510725
 2020-03-20 2020-05-25
 United States SARS-CoV-2/human/USA/hCoV-19-USA-CA-UCSF-UC47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8318A C14408T A20268G A23403G C26111T C28854T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

MT510726
 2020-03-20 2020-05-25
 United States SARS-CoV-2/human/USA/hCoV-19-USA-CA-UCSF-UC48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C11916T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

MT627931
 2020-03-20 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S601/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT671812
 2020-03-20 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1756/2020
 ATTAAAGGTTT1- C27874T

MT706172
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706175
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T T19071A A23403G T24982C G25563T C25624T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706195
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706301
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706302
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706303
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G17658T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706304
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C9474T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706305
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706306
 2020-03-20 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9520T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810526
 2020-03-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1660-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810534
 2020-03-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1669-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A G6170C C14408T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810539
 2020-03-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1674-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810836
 2020-03-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1462-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G11083T C14805T C18086T G23012C G26144T G28842T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810837
 2020-03-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1463-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810916
 2020-03-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0178-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6255T C14408T A23403G G23426T G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810962
 2020-03-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0257-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT913119
 2020-03-20 2020-08-22
 Germany SARS-CoV-2/human/DEU/SCoV2_2O/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MW030216
 2020-03-20 2020-09-22
 Peru SARS-CoV-2/human/PER/covper080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C14408T A20268G A23403G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030224
 2020-03-20 2020-09-22
 Peru SARS-CoV-2/human/PER/covper088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T GTCATGTTA510- C3037T C14408T A20268G A23403G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030225
 2020-03-20 2020-09-22
 Peru SARS-CoV-2/human/PER/covper089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C884T C3037T C5869T C14408T A23403G G25429T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030226
 2020-03-20 2020-09-22
 Peru SARS-CoV-2/human/PER/covper090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T G10265A G11535T C14408T A23403G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013201
 2020-03-20 2020-06-01
 China hCoV-19/Guangzhou/ID054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1316C G1325T C3037T G7115A G11083T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013215
 2020-03-20 2020-06-01
 China hCoV-19/Guangzhou/ID012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T G6271A C14408T C14925T C15810T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417200
 2020-03-21 2020-03-24
 United States hCoV-19/USA/WI-UW-06/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C1929T C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_417201
 2020-03-21 2020-03-24
 United States hCoV-19/USA/WI-UW-07/2020
 ATTA1- G8A C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_417202
 2020-03-21 2020-03-24
 United States hCoV-19/USA/WI-UW-08/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G3871T C14408T A23403G C29614T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_417203
 2020-03-21 2020-03-24
 United States hCoV-19/USA/WI-UW-09/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T10771C C17747T A17858G C18060T T28144C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_417204
 2020-03-21 2020-03-24
 United States hCoV-19/USA/WI-UW-10/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AA29CT C241T C1059T C3037T C11224T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_418645
 2020-03-21 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A618G C3037T C14408T C15024T C15324T C16887T A23403G C27679T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419169
 2020-03-21 2020-04-01
 France hCoV-19/France/ARA11939/2020
 C241T C3037T C14408T C21575T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419170
 2020-03-21 2020-04-01
 France hCoV-19/France/ARA11943/2020
 C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419171
 2020-03-21 2020-04-01
 France hCoV-19/France/ARA11949/2020
 C241T C3037T C14408T C15237T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419172
 2020-03-21 2020-04-01
 France hCoV-19/France/ARA11950/2020
 C241T C3037T C14408T C15237T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419173
 2020-03-21 2020-04-01
 France hCoV-19/France/ARA11952/2020
 C241T C3037T C14408T A23403G G25563T G28086T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_419175
 2020-03-21 2020-04-01
 France hCoV-19/France/ARA11995/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419176
 2020-03-21 2020-04-01
 France hCoV-19/France/ARA11997/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28325A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_419823 MT451036
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC130/2020
 AT1- C8782T A9307G G13118T C17747T A17858G C18060T C22480T A24694T T28144C

EPI_ISL_419824 MT451037
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC131/2020
 ATTA1- C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_419825
 2020-03-21 2020-04-03
 Australia hCoV-19/Australia/VIC132/2020
 ATTAAAGGT1- ATG1605- C1912T C25571T

EPI_ISL_419924 MT451129
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC229/2020
 ATTAA1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_419925
 2020-03-21 2020-04-03
 Australia hCoV-19/Australia/VIC230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T GTTATG515- C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_419926 MT451130
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC231/2020
 ATTA1- C6312A G11083T C13730T C18680T C23929T C28311T

EPI_ISL_419927 MT451131
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_419928 MT451132
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC233/2020
 ATTA1- C66T C7334T A7479G G11083T C14805T C15222T T17247C C21575T C25572T G26144T

EPI_ISL_419929 MT451133
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2091T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_419931 MT451134
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A22798G A23403G G25563T

EPI_ISL_419932 MT451135
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G A1115G C6312A C7093T G11083T C13730T T14313C G21123T C23929T C28311T

EPI_ISL_419933 MT451136
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC238/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419934 MT451137
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15371T A23403G GGG28881AAC

EPI_ISL_419935 MT451138
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC240/2020
 ATTA1- C241T C1572Y C3037T C14408T T19839C A23403G A25968R GGG28881AAC

EPI_ISL_419936 MT451139
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC241/2020
 ATTAAAGGTTTA1- C8782T C17747T A17858G C18060T G20773A A24694T T28144C

EPI_ISL_419937
 2020-03-21 2020-04-03
 Australia hCoV-19/Australia/VIC242/2020
 ATTAAAGGT1- ATG1605- C1912T

EPI_ISL_419938 MT451140
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC243/2020
 ATTAAAGGTT1- C241T C1059T C3037T C10851T C14408T A23403G C25521T G25563T

EPI_ISL_419939 MT451141
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC244/2020
 ATT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_419940 MT451142
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC245/2020
 ATTA1- C241T C1059T G3014A C3037T C10851T C14408T A23403G G25563T

EPI_ISL_419941 MT451143
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T T11515A C14408T A23403G G25563T G28451C

EPI_ISL_419942 MT451144
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_419943 MT451145
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T A29865G

EPI_ISL_419944 MT451146
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC249/2020
 ATTA1- C241T C1427T C3037T G3419A C14408T A23403G GGG28881AAC

EPI_ISL_419945 MT451147
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_419946 MT451148
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC251/2020
 ATTA1- G2528A C6312A C9967T G11083T C13730T C23929T C28311T

EPI_ISL_419947 MT451149
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC252/2020
 AT1- C241T C3037T C11941T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_419948 MT451150
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC253/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419949 MT451151
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC254/2020
 AT1- C241T C3037T C14408T A20268G A23403G A24121G C28854T

EPI_ISL_419950 MT451153
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC257/2020
 C241T C3037T C14408T A20268G A23403G A24121G C28854T

EPI_ISL_419951 MT451154
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC258/2020
 AT1- C241T C1059T C3037T C14408T C21648T A23403G C23673T G25563T

EPI_ISL_419952 MT451155
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC259/2020
 ATTA1- C241T C1059T C3037T C14408T C18348Y C21711T A23403G G25563T

EPI_ISL_419953 MT451156
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC260/2020
 C241T C1059T C2706T C3037T C5348T C12970T C14408T A23403G A23416T G25563T C28528T C29119T

EPI_ISL_419954 MT451157
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC261/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T C21711T A23403G G25563T A29865G

EPI_ISL_419955 MT451158
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1076T G1397A G3564K A9749G G11083T G24933K C27964T T28688C G29742T

EPI_ISL_419956 MT451159
 2020-03-21 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C10851T C14183T C14408T A23403G G25563T

EPI_ISL_420030
 2020-03-21 2020-04-04
 Democratic Republic of the Congo hCoV-19/DRC/214/2020
 AT1- C241T C3037T C14408T C15277T C15324T A23403G TCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29729-

EPI_ISL_420036 MT451152
 2020-03-21 2020-04-04
 Australia SARS-CoV-2/human/AUS/VIC256/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_420059
 2020-03-21 2020-04-04
 France hCoV-19/France/IDF3165/2020
 C241T C3037T A10323G C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_420084
 2020-03-21 2020-04-05
 Taiwan hCoV-19/Taiwan/170/2020
 ATTAAA1- C241T C2416T C3037T C5654T C14408T A23403G G25563T G27877T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_420175
 2020-03-21 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C07F8/2020
 ATG1605- T4949C G6080T C16887T

EPI_ISL_420276
 2020-03-21 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C00B1/2020
 A2480G C2558T C8078T C8917T G11083T C14805T G26144T

EPI_ISL_420277
 2020-03-21 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0066/2020
 A2480G C2558T C8078T C8917T G11083T C14805T G26144T

EPI_ISL_420278
 2020-03-21 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0646/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420279
 2020-03-21 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C05A3/2020
 C241T C1469T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420280
 2020-03-21 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C06A0/2020
 ATG1605- C25708T

EPI_ISL_420282
 2020-03-21 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C05C1/2020
 A2480G C2558T G11083T C14805T G21255A G26144T C26735T C26885T

EPI_ISL_420567
 2020-03-21 2020-04-06
 Italy hCoV-19/Italy/TE5780/2020
 C44A C48A C241T C3037T C4668M T7396W T8827W C14408T A23403G T25811Y C25961S GGG28881AAC AAAA29900-

EPI_ISL_420912
 2020-03-21 2020-04-07
 Germany hCoV-19/Germany/BAV-V2012856/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420937
 2020-03-21 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-24CB7/2020
 G1440A G2891A A10323G C25669T T28705G G28851T AA29902-

EPI_ISL_420940
 2020-03-21 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-24DD2/2020
 C241T C3037T C14408T C20148T A23403G GGG28881AAC

EPI_ISL_420944
 2020-03-21 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-24FFA/2020
 AT1- C875T ATG1605- C6255T AAAAAAA29897-

EPI_ISL_421195
 2020-03-21 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10017/2020
 C241T C1059T C3037T C14408T A23403G G25563T C28253T

EPI_ISL_421468
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G G25593T GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421469
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G G25593T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421470
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11663T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421471
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25593T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421472
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G C24863T T25191C A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421473
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421474
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G21830T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421475
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421476
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421477
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G27014T A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421478
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421479
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421480
 2020-03-21 2020-04-08
 Portugal hCoV-19/Portugal/PT0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421506
 2020-03-21 2020-04-08
 France hCoV-19/France/IDF3236/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C10748T C14408T C15324T A21137G A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_421594 MT370923
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T G23126T A23403G G25563T TGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29765-

EPI_ISL_421596 MT371028
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421597 MT370977
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T G29540A AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_421598 MT371035
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29239A G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421599 MT370991
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C10851T C14408T C22530T A23403G G25305T G25563T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_421600 MT371019
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G C23453T G25563T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_421602 MT370964
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_421603 MT370983
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C1917T C3037T C14408T A17615G A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_421604 MT370947
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421606 MT370984
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421607 MT370979
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A19883G A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_421608 MT371023
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421611 MT370962
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_421634 MT371013
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_421635 MT370927
 2020-03-21 2020-04-09
 United States SARS-CoV-2/human/USA/NY-PV09103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C1917T C3037T C14408T G20005A A23403G G25563T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_422488 MT371000
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422489 MT371009
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422523 MT370954
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C8782T T9477A T28144C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422528 MT370931
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A14747G A20755C A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_422554 MT370969
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A ACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29768-

EPI_ISL_422556 MT370938
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C14408T C18877T A23403G G25563T T29010C GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422557 MT370967
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A14912G A23403G G25563T AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_422558 MT371033
 2020-03-21 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422639 LR877936
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/Gelderland_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C3821A C8316T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422687 LR877754
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14786T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422689 LR877755
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422690 LR877768
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C16762T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422691 LR877762
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18828T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422692 LR877766
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422695 LR877758
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422696 LR877753
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422697 LR877770
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422698 LR877771
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T C21648T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422699 LR877769
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T C21648T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422700 LR877785
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T G28985T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422701 LR877778
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422702 LR877784
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C14408T A23403G A24862G G25563C C28629T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422861 LR877942
 2020-03-21 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423149
 2020-03-21 2020-04-12
 United Kingdom hCoV-19/England/20134060904/2020
 A2480G C2558T G11083T C14805T C24964T G26144T

EPI_ISL_423632
 2020-03-21 2020-04-12
 United Kingdom hCoV-19/England/20130052804/2020
 C241T C3037T C12974Y A13640G C14408T A23403G G25429T

EPI_ISL_424028
 2020-03-21 2020-04-12
 United Kingdom hCoV-19/England/20129035304/2020
 C241T C3037T C3373A C4246T C9246T C11195T C14408T A23403G GGG28881AAC

EPI_ISL_424126
 2020-03-21 2020-04-12
 United Kingdom hCoV-19/England/20129163604/2020
 C241T C3037T G4080K G4280K G6116R G10097A C14408T A23403G C23731T T24892Y G28580T GGG28881AAC

EPI_ISL_424193 MT326118
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1728/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_424195 MT326120
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1726/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AAC34HTT C241T C1059T C3037T C11916T C14408T G17679T A23403G G25563T A27515G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_424223 MT326148
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- A1098G C8782T C17747T A17858G C18060T T28144C AAAAA29899-

EPI_ISL_424224 MT326149
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- A4236G A8031G G11083T C14805T T25655C G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_424225 MT326150
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1707/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A35T C37H C241T T833C C1059T C3037T C11455T C14408T A23403G G25563T C27964T A29903-

EPI_ISL_424226 MT326151
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGAC1- A1098G C8782T C17747T A17858G C18060T G25606T T28144C AA29902-

EPI_ISL_424227 MT326152
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACA1- C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A -29904ANANANANANAA

EPI_ISL_424228 MT326153
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1702/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C40T C8782T C17747T A17858G C18060T T28144C -29904AAA

EPI_ISL_424229 MT326154
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1724/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C13608T C14408T A23403G G25563T G29553A AAAAAAAAA29895-

EPI_ISL_424231 MT326156
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1731/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA A229C TCT232CAC C832T T3160C C8782T C17747T A17858G C18060T T28144C G29744T A29866G A29869G A29903-

EPI_ISL_424233 MT326158
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACT1- C241T C3037T C14408T A20268G A23403G G25785C G29734C -29904ANANA

EPI_ISL_424234 MT326159
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1722/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_424235 MT326160
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATA1- C241T C1059T C3037T G6653A C14408T A23403G A25060G G25563T G29553A

EPI_ISL_424236 MT326161
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGT1- C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424237 MT326162
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1739/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C6040T C14408T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_424238 MT326163
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAA1- C1059T C3037T C14408T G16912T A23403G G25563T G29553A G29864A TG29867AA C29870A

EPI_ISL_424239 MT326164
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- A34H C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T A29903-

EPI_ISL_424241 MT326166
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAA1- C1929T C5784T C8782T C17747T A17858G C18060T C20646T C23525T G26730A T28144C A29866G GA29868VT A29903-

EPI_ISL_424242 MT326167
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1753/2020
 ATTA1- A5C G7T AACC34HTHH C241T C1059T C2716T C3037T C14408T G16912T A23403G G25563T G26775T G29553A A29903H

EPI_ISL_424243 MT326168
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATA1- C8782T C17747T A17858G C18060T T28144C G29864A TG29867AV C29870H

EPI_ISL_424245 MT326170
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_424246 MT326171
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1758/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAAAAA

EPI_ISL_424247 MT326172
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T G14772T C17747T A17858G C18060T T28144C TG29867AA

EPI_ISL_424253 MT326089
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1792/2020
 ATTAAAGGTTTATACCTTC1- AACC34TTTH C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424254 MT326090
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C3037T C14408T G15414A G17964A A23403G G23405T C23575T

EPI_ISL_424261 MT326097
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1784/2020
 ATTAAAGG1- AACC34TTTA C8782T C17747T A17858G C18060T G22984A T27384C T28144C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_424285 MT326040
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/OR-UW-1851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17747T A17858G C18060T T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_424300 MT326055
 2020-03-21 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C6040T C14408T A23403G G25563T -29904GANANA

EPI_ISL_424346
 2020-03-21 2020-04-13
 United States hCoV-19/USA/AK-PHL037/2020
 ATTAAAGGTTTAT1- T2266C C6027T A10236G G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424492
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/469/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424493
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/470/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424517
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/495/2020
 C241T C3037T C5730T G10870T C14408T G15850T A23403G G23587T GGG28881AAC

EPI_ISL_424518
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/496/2020
 G370T C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424519
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/497/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424520
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/498/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424521
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/499/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424522
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/500/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424523
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/501/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424524
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/502/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424525
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/503/2020
 C241T C3037T C14408T T20064C A23403G G25429T

EPI_ISL_424526
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/504/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_424527
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/505/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_424528
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/506/2020
 C241T C3037T C14408T G22225A A23403G C26801G

EPI_ISL_424535
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/513/2020
 C241T C3037T A11839G T12015G C14408T G16377T T19839C A23403G G23856A GGG28881AAC

EPI_ISL_424536
 2020-03-21 2020-04-13
 Iceland hCoV-19/Iceland/514/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T GGG28881AAC

EPI_ISL_425130 MT582454
 2020-03-21 2020-04-14
 Germany SARS-CoV-2/human/DEU/NRW-46/2020
 G1397A G20887A C21627T T28688C C28830T G29742T

EPI_ISL_425525
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E2ED/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_425526
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E2FC/2020
 C241T C3037T C14408T T15351G G21518T A23403G

EPI_ISL_425530
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E335/2020
 G1440A G2891A C10507T

EPI_ISL_425532
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E362/2020
 C241T C3037T A7877G C14408T C16289T A23403G G25429T

EPI_ISL_425533
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E371/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425535
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E39F/2020
 A1412G A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_425536
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E3AE/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425537
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E3BD/2020
 A1412G A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_425869
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB071/2020
 

EPI_ISL_425875
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB083/2020
 C241T C3037T T14079C C14408T A23403G GGG28881AAC

EPI_ISL_425876
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB084/2020
 C241T C3037T C14408T C22879A A23403G C25844T

EPI_ISL_425877
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB085/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_425878
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB086/2020
 A2480G C2558T T10480C G11083T C14805T G21830T T26130C G26144T C27559T

EPI_ISL_425879
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB087/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_425880
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB089/2020
 C3787T C16362T

EPI_ISL_425881
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB090/2020
 

EPI_ISL_425882
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB091/2020
 

EPI_ISL_425885
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB095/2020
 

EPI_ISL_425891
 2020-03-21 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB101/2020
 C241T C3037T G6710T C14408T A23403G GGG28881AAC

EPI_ISL_426057 MT345803
 2020-03-21 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-2127/2020
 ATTAAA1- C241T C3037T C5239T C8730T C14408T T15264C A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426077
 2020-03-21 2020-04-14
 United States hCoV-19/USA/UN-UW-2069/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T A29901G A29903G

EPI_ISL_426300
 2020-03-21 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-26088-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426302
 2020-03-21 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-26856-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C2676T T6329C C8782T A22606T T28144C G28878A G29742A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426356
 2020-03-21 2020-04-16
 Czech Republic hCoV-19/Czech Republic/Seq3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A21643C A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426661 MT451244
 2020-03-21 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC353/2020
 ATT1- C241T C3037T C8660T C14408T A23403G GGG28881AAC

EPI_ISL_426662 MT451245
 2020-03-21 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC354/2020
 ATTA1- C241T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T G28086T A28811G GGG28881AAC

EPI_ISL_426663 MT451246
 2020-03-21 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC355/2020
 AT1- G957A A1547G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_426664 MT451247
 2020-03-21 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC356/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_426665 MT451248
 2020-03-21 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC357/2020
 A1- C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427279
 2020-03-21 2020-04-17
 United States hCoV-19/USA/MN-MDH-140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29734A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427280
 2020-03-21 2020-04-17
 United States hCoV-19/USA/MN-MDH-141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C C29149T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428275
 2020-03-21 2020-04-20
 United States hCoV-19/USA/WI-UW-179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9510T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428276
 2020-03-21 2020-04-20
 United States hCoV-19/USA/WI-UW-180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428292
 2020-03-21 2020-04-20
 United States hCoV-19/USA/WI-UW-196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428690
 2020-03-21 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_27/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G2293T C3037T C14408T A20268G A23403G G29734C -29826T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_428691
 2020-03-21 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_28/2020
 ATTAAAGGTTTATACCTTCCCAG1- T25G C8782T T9477A C14805T A22151G G25979T C28087T T28144C C28657T C28863T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_428705
 2020-03-21 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_3506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10078T C12923T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428706
 2020-03-21 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_3607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16699T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428708
 2020-03-21 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_3809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13356T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428709
 2020-03-21 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_3910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22132A A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428720
 2020-03-21 2020-04-21
 Turkey hCoV-19/Turkey/HSGM-8001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G12248T C14408T C18877T A23403G T23599A G25563T C26735T

EPI_ISL_428856
 2020-03-21 2020-04-22
 Gambia hCoV-19/Gambia/GC19-026/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_429126
 2020-03-21 2020-04-23
 Sweden hCoV-19/Sweden/20-08320/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_429172
 2020-03-21 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0036/2020
 A1- C241T C3037T C14408T A23403G C27046T GGG28881AAC C29666T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429197
 2020-03-21 2020-04-23
 Switzerland hCoV-19/Switzerland/GE0199/2020/P1
 ATTAAAGGT1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_429203
 2020-03-21 2020-04-23
 Switzerland hCoV-19/Switzerland/GE1736/2020
 ATTAAAG1- C241T C3037T C14408T A23403G GGG28881AAC T29148C

EPI_ISL_429567
 2020-03-21 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI490/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429990 MT598171
 2020-03-21 2020-04-24
 United States SARS-CoV-2/human/USA/SEARCH-0007-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- GTTATG515- C1059T C3037T C5467T C14408T A23403G G25563T T27863C T28135C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430137 MT627607
 2020-03-21 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S283/2020
 T5797C C8782T G16846A C17747T A17858G C18060T A27525G T27832C T28144C G28646A

EPI_ISL_430264 MT632497
 2020-03-21 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S226/2020
 C241T C379A C1059T T2244C C3037T G10753T C14408T A23403G G25563T

EPI_ISL_430464
 2020-03-21 2020-04-27
 India hCoV-19/India/S3/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G G24933T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_430468
 2020-03-21 2020-04-27
 India hCoV-19/India/S2/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A23403G G24933T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_431779
 2020-03-21 2020-04-29
 China hCoV-19/Fujian/IM3520008T/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T -6697T T11638C C14408T A23403G GGG28881AAC C29708T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_433281
 2020-03-21 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433284
 2020-03-21 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433287
 2020-03-21 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR375/2020
 C241T C3037T C14408T C22879A A23403G

EPI_ISL_434682
 2020-03-21 2020-05-01
 United States hCoV-19/USA/MD-HP00016/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434828
 2020-03-21 2020-05-01
 United States hCoV-19/USA/TX-HMH128/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434829
 2020-03-21 2020-05-01
 United States hCoV-19/USA/TX-HMH129/2020
 C302T T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434831
 2020-03-21 2020-05-01
 United States hCoV-19/USA/TX-HMH131/2020
 T490A C2037T C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G27952T G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434834
 2020-03-21 2020-05-01
 United States hCoV-19/USA/TX-HMH134/2020
 C241T C3037T C14408T A23403G C23707T C29441G

EPI_ISL_434839
 2020-03-21 2020-05-01
 United States hCoV-19/USA/TX-HMH140/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_434840
 2020-03-21 2020-05-01
 United States hCoV-19/USA/TX-HMH141/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434841
 2020-03-21 2020-05-01
 United States hCoV-19/USA/TX-HMH142/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_435426
 2020-03-21 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00105w/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_435671
 2020-03-21 2020-05-05
 United States hCoV-19/USA/CA-SCCPHD-UC192/2020
 G25785T C26204T G27204T

EPI_ISL_435676
 2020-03-21 2020-05-05
 Brunei hCoV-19/Brunei/4/2020
 ATTA1- C6312A T7621C G11083T C13730T C23929T A24696W T25322Y A25335R C28311T AAAAAAAAAAAA29892-

EPI_ISL_435677
 2020-03-21 2020-05-05
 Brunei hCoV-19/Brunei/5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C6312A T7621C G11083T C13730T C18115T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_436045
 2020-03-21 2020-05-05
 United States hCoV-19/USA/VI-CDC-1999/2020
 C241T C1059T C3037T C9724T T10472Y T11974C C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436724
 2020-03-21 2020-05-07
 Italy hCoV-19/Italy/TE5827/2020
 A39G T42C C44A C48M TA54YM C241T AC538WM C3037T G7360T C14408T G16117T A23403G G25720T GGG28881AAC A29903-

EPI_ISL_436830 MT439260
 2020-03-21 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T T21616C A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_437360
 2020-03-21 2020-05-08
 United States hCoV-19/USA/MN-MDH-115/2020
 ATTAAAGG1- C241T C2416T C3037T C14408T A23403G C25169T G25563T CGAGGCCACGCGGAGTACGAT29733- CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_437562
 2020-03-21 2020-05-11
 United States hCoV-19/USA/CA-SR0248/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_438076
 2020-03-21 2020-05-12
 Austria hCoV-19/Austria/CeMM0246/2020
 C241T C3037T C14408T T22521K A23403G C27046T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_438077
 2020-03-21 2020-05-12
 Austria hCoV-19/Austria/CeMM0247/2020
 C241T C3037T C5183T C14408T C16726T T22521K A23403G T27900C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_438078
 2020-03-21 2020-05-12
 Austria hCoV-19/Austria/CeMM0248/2020
 T514C C17410T T22521K G24095K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438079
 2020-03-21 2020-05-12
 Austria hCoV-19/Austria/CeMM0249/2020
 C241T C3037T C14408T T22521K A23403G A24862G AAAAAAAAAAAAA29891-

EPI_ISL_438080
 2020-03-21 2020-05-12
 Austria hCoV-19/Austria/CeMM0250/2020
 C241T C3037T C10202Y C14408T T22521K A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_438081
 2020-03-21 2020-05-12
 Austria hCoV-19/Austria/CeMM0251/2020
 C241T C3037T C14408T T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438082
 2020-03-21 2020-05-12
 Austria hCoV-19/Austria/CeMM0252/2020
 C241T C1059T C3037T G5847K C5849Y C14408T T22521K A23403G T25414C G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_438225
 2020-03-21 2020-05-12
 United States hCoV-19/USA/MD-HP00032/2020
 A2480G C2558T G11083T C14805T C18508T G26144T

EPI_ISL_439049
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T C14805T T17247C G26144T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439056
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439063
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439966
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/England/BRIS-121D4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11083T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440109
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7333C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3116G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440144
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-72FEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K G28086T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440170
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-73202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440183
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-73062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440208
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-73071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440282
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-731F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G160T C241T C2937T C3037T C14408T A20268G A23403G T25202K

EPI_ISL_441373
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-102076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- ATG1605- C6696T C11001T T22729C

EPI_ISL_441375
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-102094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441377
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1020B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- AGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGA187- ATG1605- C6696T C11001T T22729C C25844T G28793K

EPI_ISL_441378
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1020C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- ATG1605- C17999T G26065T

EPI_ISL_441405
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-10236E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_441406
 2020-03-21 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-10237D/2020
 ATTAAAGGTTTA1- ATG1605- C6696T C11001T C13499T T22729C G25567T C25844T

EPI_ISL_443217
 2020-03-21 2020-05-12
 Singapore hCoV-19/Singapore/125/2020
 T120Y C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_443220
 2020-03-21 2020-05-12
 Singapore hCoV-19/Singapore/128/2020
 C241T A290T C850T C3037T C11224T C14408T A23403G C26753T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_443269
 2020-03-21 2020-05-12
 France hCoV-19/France/B5344/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T G28378T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_444276 MT479225
 2020-03-21 2020-05-13
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-23/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_444586
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM098/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444588
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0103/2020
 C241T T490A C3177T T18736C A23403G T26729C G28077C T28144C A29567C A29700G

EPI_ISL_444600
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0117/2020
 C241T C1059T C3037T A10987G C14408T A23403G G25563T

EPI_ISL_444601
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0118/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_444603
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0120/2020
 T490A C3177T C8782T C9113T T18736C C21648T C24034T T26729C C27635T G28077C T28144C A29567C A29700G

EPI_ISL_444604
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0121/2020
 T490A C1077T C3177T C8782T C9113T T18736C C21648T C24034T T26729C C27635T G28077C T28144C A29567C A29700G

EPI_ISL_444605
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0122/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_444607
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0125/2020
 C241T C3037T C14408T C22450T A23403G C29463T

EPI_ISL_444608
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0126/2020
 C241T C1059T C3037T C11916T C14408T C16260T A23403G G25563T

EPI_ISL_444609
 2020-03-21 2020-05-14
 United States hCoV-19/USA/IL-NM0127/2020
 C241T C1059T C3037T C5183T C14408T A23403G G25563T

EPI_ISL_444980
 2020-03-21 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH4964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C7735T C14408T C16393T A20268G C22295T A23403G G29734C

EPI_ISL_444981
 2020-03-21 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH5081/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_444982
 2020-03-21 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH5325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C14408T A14487G A20268G A23403G G28325T G29734C

EPI_ISL_445077
 2020-03-21 2020-05-14
 United States hCoV-19/USA/MN-UMGC-7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A30T C241T C1059T C3037T C11224T C14408T C15654T A23403G G25563T C28253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_445080
 2020-03-21 2020-05-14
 United States hCoV-19/USA/TX_GCID_192000072/2020
 ATTAAAGG1- C241T C3037T C14408T C14786T A23403G GGG28881AAC AAA29876TGG A29881G A29886G AAAAAAAAAA29894-

EPI_ISL_445164
 2020-03-21 2020-05-15
 United States hCoV-19/USA/CA-SR0310/2020
 C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_445290
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_9/2020
 A1T T3A A5T C241T C1059T C3037T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_445291
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_10/2020
 A1GGTTTATGATCCTTTGCAACCTGAATTAGACTCA A4C TT9-A T76W T78K C241T C1059T C3037T C14408T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445294
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_13/2020
 ATTAAAGGTTTATACCTTCCCAG1- A27C C241T C1059T C3037T G5069K C14408T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445295
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_14/2020
 A1G -A3TTATGATCCTTTGCAACCG C241T C3037T C14408T A23403G C25350T T29859C G29862A G29868A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445296
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Coyhaique_1/2020
 -T2CAACACAGTTTATGATCCTTTGCAACCG AGG6TKR C241T C3037T A10994G C14408T A23403G C25350T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445297
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Rancagua_7/2020
 A1T -6T C241T C3037T C8389T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_445302
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Santiago_23/2020
 A1T T3A A5T C241T C3037T C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_445325
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Santiago_46/2020
 A1GGCGTTGCACTTCTTGCTGTTTTTCATAGCGCTTCCAAAA T3C A5C GG7AA C241T C3037T C10507T A12506R C14408T C18877T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_445326
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Santiago_47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C44G C241T C3037T C14408T C17288T A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445327
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Santiago_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C4655T C8299T C14408T A23403G C29144T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_445356
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Santiago_60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- T47C G11083T G12817R C14805T C23243Y C23707T G26144T T27384C TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_445366
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Santiago_70/2020
 T2A A4T C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445367
 2020-03-21 2020-05-15
 Chile hCoV-19/Chile/Santiago_71/2020
 A1T AAAGG4CGGCA C241T C3037T C14408T A23403G G25793T T27299C GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAA29882T

EPI_ISL_447165 MT506679
 2020-03-21 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20194/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAA29890-

EPI_ISL_447197 MT506664
 2020-03-21 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20227/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29370Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_447216 MT506670
 2020-03-21 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20246/2020
 C241T C1059T A2863G C3037T C10156T C14408T A23403G G25563T

EPI_ISL_447220 MT506677
 2020-03-21 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20250/2020
 C241T C1059T C2862T C3037T A5011M C14408T A23403G G25563T

EPI_ISL_447308
 2020-03-21 2020-05-17
 Israel hCoV-19/Israel/701002317/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447309
 2020-03-21 2020-05-17
 Israel hCoV-19/Israel/701002314/2020
 C241T C829T C1059T G2095A C3037T G7295T C14408T C16575T G19800T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447310
 2020-03-21 2020-05-17
 Israel hCoV-19/Israel/701002313/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447616
 2020-03-21 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU22/2020
 C241T C1059T C3037T C9510T T14148C C14408T A23403G G25563T G25879T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_450004
 2020-03-21 2020-05-19
 United States hCoV-19/USA/NY-PV09312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T TGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29765-

EPI_ISL_450005
 2020-03-21 2020-05-19
 United States hCoV-19/USA/NY-PV09313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C1853T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450006
 2020-03-21 2020-05-19
 United States hCoV-19/USA/NY-PV09314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1917T C3037T T6703C C14408T G20005A A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450007
 2020-03-21 2020-05-19
 United States hCoV-19/USA/NY-PV09315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C608T AAGTCATTT686- C1059T C3037T C14408T A15147G A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450009
 2020-03-21 2020-05-19
 United States hCoV-19/USA/NY-PV09317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T C29679T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_450010
 2020-03-21 2020-05-19
 United States hCoV-19/USA/NY-PV09318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450164
 2020-03-21 2020-05-20
 United States hCoV-19/USA/NY-PV09492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T G28376T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450166
 2020-03-21 2020-05-20
 United States hCoV-19/USA/NY-PV09494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450195
 2020-03-21 2020-05-20
 Australia hCoV-19/Australia/SAP039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A187G C241T AAGTCATTT686- C3037T C14408T A23403G GTTAATCCAGTA26158-

EPI_ISL_450457 MT499183
 2020-03-21 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1208/2020
 C8782T C17747T A17858G C18060T T18411C T28144C

EPI_ISL_451082
 2020-03-21 2020-05-23
 Australia hCoV-19/Australia/SAP041/2020
 AT1- C241T C1059T C3037T C14408T C21711T A23403G G25563T

EPI_ISL_451083
 2020-03-21 2020-05-23
 Australia hCoV-19/Australia/SAP042/2020
 C6695A C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_451134
 2020-03-21 2020-05-23
 Australia hCoV-19/Australia/SAP125/2020
 ATTAAAGGT1- G374A C6936T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_451135
 2020-03-21 2020-05-23
 Australia hCoV-19/Australia/SAP126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T

EPI_ISL_451402
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC687/2020
 C241T T658C C1059T C3037T C14408T C18457T A23403G G25563T

EPI_ISL_451406
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC691/2020
 C241T C1059T C3037T C7006T C14408T T15462C A23403G G25563T

EPI_ISL_451408
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC693/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25630A C27964T

EPI_ISL_451415
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC700/2020
 C1780T G11083T C14805T G26144T G28842T

EPI_ISL_451420
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC705/2020
 C241T C1059T C3037T C14408T C18457T A23403G G25563T

EPI_ISL_451434
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC719/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451452
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC737/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_451455
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC740/2020
 G199T C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451457
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC742/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451464
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC749/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451465
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC750/2020
 C241T C1059T C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A

EPI_ISL_451479
 2020-03-21 2020-05-25
 United States hCoV-19/USA/NY-NYUMC765/2020
 C241T C344T C1059T C1973T C3037T C14408T A23403G G25563T

EPI_ISL_451967 MT635443
 2020-03-21 2020-05-26
 Russia SARS-CoV-2/human/RUS/SCPM-O-cDNA-05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTG1- C241T C3037T C14408T G26951T TGCAGAATGAATTCTCGTAACTACATA29612- AAGTAGATGTAGTTAACTTTAATCTCACA29643- TA29672CC T29680C TAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACA29682- TG29765CT AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTT29776G T29823C G29825A A29827C ATCCCCATGTGATTTTA29833- T29851C G29853A T29858C AGGA29860CAAG TG29867CA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_452120 MT512420
 2020-03-21 2020-05-26
 United States SARS-CoV-2/human/USA/GA-CDC-8816/2020
 C241T C1059T C3037T C14408T C17934T C18647T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452264
 2020-03-21 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20390/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452330
 2020-03-21 2020-05-27
 China hCoV-19/Beijing/DT-travelFR01/2020
 C241T C2416T C3037T T8022G A8026T C14322T C14408T T19299G T20891G A23403G G25563T T26038C

EPI_ISL_452356
 2020-03-21 2020-05-27
 China hCoV-19/Beijing/DT-travelUK03/2020
 C241T C3037T T8022G C14408T C16260T G17944T A23403G

EPI_ISL_452485
 2020-03-21 2020-05-27
 Spain hCoV-19/Spain/COV001416/2020
 C241T C3037T G11083T C14408T A20268G A23403G

EPI_ISL_453820
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453822
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453823
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C28292A GGG28881AAC G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453824
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G C25169T GGG28881AAC G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454130
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454131
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454132
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4201T C14408T A23403G G26172A C26527T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454133
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454134
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4201T C14408T A23403G G26172A C26527T G29798A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454135
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C1059T C3037T C14408T A23403G G25563T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454241
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454242
 2020-03-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_455211
 2020-03-21 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455212
 2020-03-21 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455213
 2020-03-21 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T G17808T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455214
 2020-03-21 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G C28253T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455699
 2020-03-21 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1492/2020
 C241T C3037T T3370A C14408T A23403G GGG28881AAC

EPI_ISL_456195
 2020-03-21 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1192/2020
 C241T C1059T C3037T C14408T C16937T A23403G G25563T A28841G C29421T

EPI_ISL_456197
 2020-03-21 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1272/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_456198
 2020-03-21 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1273/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_456199
 2020-03-21 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1274/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C29774T

EPI_ISL_456219
 2020-03-21 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1452/2020
 C241T C3037T T11522G C14408T A20268G A23403G C28854T

EPI_ISL_457641
 2020-03-21 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CA354/2020
 C241T C3037T C14408T G15780T A23403G

EPI_ISL_457823 MT646120
 2020-03-21 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00137/2020
 C241T C2416T C3037T C14408T A23403G G25563T A28168R

EPI_ISL_457988
 2020-03-21 2020-06-02
 Oman hCoV-19/Oman/RESP-20-4153/2020
 C241T C3037T C4246T G10265A C14408T C16293T A23403G T23482C GGG28881AAC

EPI_ISL_457989
 2020-03-21 2020-06-02
 Oman hCoV-19/Oman/RESP-20-4252/2020
 C241T C3037T C14408T G18859T G21624T A23403G GGG28881AAC

EPI_ISL_457990
 2020-03-21 2020-06-02
 Oman hCoV-19/Oman/RESP-20-4400/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_459860
 2020-03-21 2020-06-04
 Chile hCoV-19/Chile/PuenteAlto-29192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459975
 2020-03-21 2020-06-05
 Morocco hCoV-19/Morocco/6897/2020
 C241T C3037T C6594T C14408T A20268G A23403G T29726- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_460052
 2020-03-21 2020-06-05
 United States hCoV-19/USA/MN-MDH-139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T490A AAGTCATTT686- C3177T C8782T T18736C G22801T C24034T T26729C C27635T G28077C T28144C A29567C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460053
 2020-03-21 2020-06-05
 United States hCoV-19/USA/MN-MDH-148/2020
 ATTA1- C1238T C8782T C16466T C17747T A17858G C18060T T28144C T28924C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_460146 MT520221
 2020-03-21 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00683/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2416T C3037T T11526C C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_461029
 2020-03-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10956T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461030
 2020-03-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10956T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461149
 2020-03-21 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C26912T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461247
 2020-03-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462295
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/177/2020
 C241T C1059T C3037T G12514T C14408T G15380T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_462296
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/178/2020
 C241T C678Y C1059T C1555T C3037T T6394C C10319T C14408T A23403G G25563T C27964T AAAAAAAAAAAA29892-

EPI_ISL_462297
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/179/2020
 A5618G C7609T C9474T A29622G AAAAAAAAAAAA29892-

EPI_ISL_462298
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/180/2020
 C2470T G11083T C14805T T17247C C18457Y C21789T G26144T AAAAAAAAAAAA29892-

EPI_ISL_462299
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/181/2020
 T637Y C6312A G11083T C13730T C18167T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462300
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/182/2020
 C12897T T23487G AAAAAAAAAAAA29892-

EPI_ISL_462301
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/183/2020
 G1440A G2891A G5230K C10507T C12116T C17766T AAAAAAAAAAAA29892-

EPI_ISL_462376
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/258/2020
 C241T C3037T C4276T T8835Y C14408T G15906T T22321Y A23403G GGG28881AAC A29382R AAAAAAAAAAAA29892-

EPI_ISL_462385
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/267/2020
 C241T C3037T T8712Y C14408T C19170T G19509A A23403G G28077T GGG28881AAC G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_462390
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/272/2020
 C241T C3037T A8580R A10948G C14408T A23403G C27542T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_462391
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/273/2020
 C241T C3037T C4002T G8457R G10097A C13536T C14408T C21310M A23403G C23731T G28628T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_462392
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/274/2020
 C241T C1059T C3037T G3351A C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_462396
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/278/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_462404
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/286/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C25782Y G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_462420
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/302/2020
 A8689R T8712Y C8782T C9811T C12741T C17747T A17858G C18060T C21516Y C21642T A22411R A24694T T28144C AAAAAAAAAAAA29892-

EPI_ISL_462422
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/304/2020
 A2480G C2558T C6151T A8596R T8875Y G11083T C14805T G26144T G28451S G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_462431
 2020-03-21 2020-06-08
 Singapore hCoV-19/Singapore/313/2020
 A27G G72R C241T C3037T C14408T A23403G G23856K GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_462458
 2020-03-21 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7352/2020
 ATTAAAGGTT1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462459
 2020-03-21 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_467965
 2020-03-21 2020-06-16
 United States hCoV-19/USA/CA-SR0438/2020
 C241T GTTATG515- C1059T C3037T C5467T C14408T A23403G G25563T T27863C T28135C

EPI_ISL_467970
 2020-03-21 2020-06-16
 United States hCoV-19/USA/CA-SR0445/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_468134
 2020-03-21 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-4105/2020
 A4- C241T C3037T C14408T T19839C A23403G GGG28881AAC -29904AAAAAAAAAA

EPI_ISL_468398 MT628134
 2020-03-21 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1427/2020
 C241T C1059T A2018G C3037T C14408T A23403G G25563T

EPI_ISL_468511 MT628234
 2020-03-21 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1581/2020
 ATT1- C4776T C8782T C17747Y A17858G C18060T G28086K T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_468513 MT628236
 2020-03-21 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1583/2020
 T26897W AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_469225
 2020-03-21 2020-06-18
 Canada hCoV-19/Canada/NL_83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C T2264C C3037T C14408T C18877T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469227
 2020-03-21 2020-06-18
 Canada hCoV-19/Canada/NL_85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469230
 2020-03-21 2020-06-18
 Canada hCoV-19/Canada/NL_88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469231
 2020-03-21 2020-06-18
 Canada hCoV-19/Canada/NL_89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469232
 2020-03-21 2020-06-18
 Canada hCoV-19/Canada/NL_90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_470846
 2020-03-21 2020-06-19
 Australia hCoV-19/Australia/WA29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470847
 2020-03-21 2020-06-19
 Australia hCoV-19/Australia/WA30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C884T G1397A C7164T G8653T G11083T G13639A C20483T T28688C C29421T TTCACCGA29728- G29742T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470856
 2020-03-21 2020-06-19
 Australia hCoV-19/Australia/WA39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471222
 2020-03-21 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T TTTGGGTGTTTA21982- G25979T T28144C C28657T C28863T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_471254
 2020-03-21 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471255
 2020-03-21 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475074
 2020-03-21 2020-06-23
 Belgium hCoV-19/Belgium/UGent-114/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_475097
 2020-03-21 2020-06-23
 Sweden hCoV-19/Sweden/20-08311/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_475329
 2020-03-21 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D1112/2020
 C241T C3037T C9857T C14408T A23403G A26530G

EPI_ISL_475856
 2020-03-21 2020-06-25
 Austria hCoV-19/Austria/CeMM0428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A11768T C14408T A23403G G25563T C26681Y G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475955
 2020-03-21 2020-06-25
 Singapore hCoV-19/Singapore/424/2020
 C241T C3037T T8119Y C14408T A23403G A26174M GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_477177
 2020-03-21 2020-06-29
 Singapore hCoV-19/Singapore/159nan/2020
 CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_478553
 2020-03-21 2020-06-30
 United Kingdom hCoV-19/England/NORT-284503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G6653A C9170T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478555
 2020-03-21 2020-06-30
 United Kingdom hCoV-19/England/NORT-284521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478556
 2020-03-21 2020-06-30
 United Kingdom hCoV-19/England/NORT-28461F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12241T C14408T G15243T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479275
 2020-03-21 2020-06-30
 United Kingdom hCoV-19/England/SHEF-D14EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479912
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479941
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G621T C11752T C25665T C26447T TTA27698- T28912C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479982
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G3179A C6982T C8782T C17474T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479983
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479984
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480111
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G3179A G4399T C6982T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480112
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480113
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480114
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G3179A C6982T C8782T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480115
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G3179A C6982T C8782T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480116
 2020-03-21 2020-07-01
 Japan hCoV-19/Japan/PG-0454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G3179A C6982T C8782T T28144C TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480297
 2020-03-21 2020-07-01
 Bulgaria hCoV-19/Bulgaria/06/2020
 C203T C241T C673T C3037T C14408T A23403G A28381C GGG28881AAC

EPI_ISL_480554
 2020-03-21 2020-07-02
 Senegal hCoV-19/Senegal/659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8604C C14408T C15324T A23403G C24064T C27804T TATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29789-

EPI_ISL_482327
 2020-03-21 2020-07-03
 United States hCoV-19/USA/OR-PROV-045/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_482581
 2020-03-21 2020-07-04
 China hCoV-19/Hangzhou/HZCDC7155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482582
 2020-03-21 2020-07-04
 China hCoV-19/Hangzhou/HZCDCp145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483060 MT706050
 2020-03-21 2020-07-05
 New Zealand SARS-CoV-2/human/NZL/20CHL869065O/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_483722
 2020-03-21 2020-07-08
 Israel hCoV-19/Israel/n14276/2020
 C241T A2514- T2737C C3737A T4885C T5818C C11960A C12123A C14408T C17304T C18877T C21707A G21839T AA23165- A23403G G26660- T28217C C28720A

EPI_ISL_484082
 2020-03-21 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DC22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T24024A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484085
 2020-03-21 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DC5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484087
 2020-03-21 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DC7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T G13627T C14805T C15540T G26144T A28338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484692
 2020-03-21 2020-07-08
 United States hCoV-19/USA/MN-MDH-1289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G10870T C14408T A23403G G25563T A25859G AGTTTCCATTTGGAATCTTGATT27270- GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_488519
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-2844AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1406S A2480G C2558T C6151T G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488681
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-2844CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488714
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-28454F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T T25202K G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488773
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A9741G C10507T G27906T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488777
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T G11083T T15966Y C16948Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488778
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-2819BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2869G C3037T G3074A C14408T G17278T A23403G GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488781
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-28190A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T -27904T G27906T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488787
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T G29751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488811
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7926T C13530T T27404A A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488812
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T A16687G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488814
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-2818D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488815
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-2819DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488816
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281ACB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22225T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488822
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281A9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C5170T C9223T G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488832
 2020-03-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-281973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491453
 2020-03-21 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0042/2020
 ATTAAAGGTTTATACCTTCCCA1- G24C A27T C241T C3037T C14408T G15732T T19143C A20268G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_492111
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP123/2020
 ATTAAAG1- T1368C C6990T G11083T C14805T C20736T C23707T G26144T

EPI_ISL_492128
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP191/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T A23403G T24139A G25563T G25879T

EPI_ISL_492134
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP369/2020
 A1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492135
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP370/2020
 A1- C241T C2003T C3037T C14408T G18394T A20268G A23403G

EPI_ISL_492140
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP375/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492141
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP376/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492143
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP378/2020
 ATT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492146
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP381/2020
 ATTA1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T

EPI_ISL_492147
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP382/2020
 ATTA1- G210T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_492150
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP385/2020
 ATTAAAGG1- C4540T C8782T T9477A C9891T C14805T C19441T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492158
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP393/2020
 ATT1- G374A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_492159
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP394/2020
 ATTA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T CA28863TT

EPI_ISL_492164
 2020-03-21 2020-07-20
 Australia hCoV-19/Australia/SAP399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C2558T G11083T C14805T G26144T

EPI_ISL_492979
 2020-03-21 2020-07-20
 Singapore hCoV-19/Singapore/484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C4633T C9223T C10626T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493208
 2020-03-21 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-015/2020
 A1GGAGTGCTTAA A4G GGTTTAT7CA A14G C241T C3037T C14408T A23403G GGG28881AAC C29679T C29857T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873G

EPI_ISL_495332 MT791868
 2020-03-21 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0426/2020
 ATT1- C241T C2416T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_495333 MT791869
 2020-03-21 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0427/2020
 A1- C241T C1059T C3037T C14408T A23403G G24933T G25563T C27964T C28099T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_495334 MT791870
 2020-03-21 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T T8296C C14408T C18877T A23403G G25563T G28027T G28690T AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_495347 MT791883
 2020-03-21 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0441/2020
 ATTAAAGGTTTA1- C1102T C8782T C17747T A17858G C18060T T22972C T28144C AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_495389 MT791844
 2020-03-21 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0483/2020
 ATTA1- C241T C1059T A1124C C3037T C14408T A23403G G25563T C28695T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_495390 MT791845
 2020-03-21 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0484/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_497798
 2020-03-21 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7065A C14408T A17969G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497813
 2020-03-21 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15906T C18348T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498043
 2020-03-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2142/2020
 ATTAA1- A6G T4402C G5062T C8782T G17814T T28144C

EPI_ISL_498047
 2020-03-21 2020-07-26
 South Korea hCoV-19/Korea/KCDC2146/2020
 C241T C1059T C3037T C14408T C16260T G22205C A23403G T24139C G25563T C28821A

EPI_ISL_499466
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A62BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C20270T A29683W C29870A

EPI_ISL_499671
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5FC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_499672
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5FD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3369T G3431K C4158T C14408T A23403G GGG28881AAC

EPI_ISL_499673
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5FE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1148T A1515G T2845Y C9223T G11083T C14805T T17247C T19617G G21255C G26144T

EPI_ISL_499674
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A600C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C10078Y C14408T A23403G C25350Y

EPI_ISL_499676
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A602A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15237Y A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499677
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350T

EPI_ISL_499679
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350T C29870A

EPI_ISL_499680
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C884T C3037T G10097A C14408T A23403G C23731T C27513T GGG28881AAC

EPI_ISL_499682
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A60B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C4668T G7312R C26447T

EPI_ISL_499684
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A60EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T C14805T G26144T

EPI_ISL_499685
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A60FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G11521T C14408T G15016T G21624K A23403G GGG28881AAC C29284T

EPI_ISL_499686
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A T13216G C14408T A23403G C23731T G25563A GGG28881AAC

EPI_ISL_499692
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A61DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499693
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A61EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C9042T T28144C G28878A G29742A

EPI_ISL_499694
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T C6471Y G11083T C14805T T20988C C23280T G23405A G26144T

EPI_ISL_499695
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G G26501T C28854T

EPI_ISL_499696
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A6242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C21292T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_499698
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A628E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A19655G A23403G G25563T

EPI_ISL_499699
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A62AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_500132
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A55FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G T7831C C9223T C11074Y G11083T C14805T T17247C A17799G G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500150
 2020-03-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A57AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C3411T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500505
 2020-03-21 2020-07-29
 United States hCoV-19/USA/NY-UW-MAYO26/2020
 ATTAAA1- C36Y C241T C3037T C14408T C14703T G15327T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_500602
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500603
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500607
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500608
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500616
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500618
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3140T C14408T A23403G C26082A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500619
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G T25473C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500649
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500650
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500652
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3987T C14408T C22675T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500653
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500655
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500656
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T C23940T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500664
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C G29134A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500665
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15958T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500666
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500667
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G374A C8782T C14599T C17747T A17858G C18060T G19656T C26013T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500668
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25183T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500685
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500695
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500696
 2020-03-21 2020-07-29
 Australia hCoV-19/Australia/NSW2259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1738T C3037T C14408T A23403G T25473C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501176
 2020-03-21 2020-07-31
 Malaysia hCoV-19/Malaysia/0121/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C313T C3037T C14408T G22132K A23403G GGG28881AAC TG29867AA C29870A

EPI_ISL_501227
 2020-03-21 2020-07-31
 Malaysia hCoV-19/Malaysia/9857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6312A G11083T C13730T C19524T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501228
 2020-03-21 2020-07-31
 Malaysia hCoV-19/Malaysia/9886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241Y C313Y C6312M C13730T C19524T C23929Y C24054Y GGG28881RRS C29870A

EPI_ISL_501570
 2020-03-21 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130E93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29296T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507705
 2020-03-21 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507708
 2020-03-21 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C25976A TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_508123
 2020-03-21 2020-08-04
 Australia hCoV-19/Australia/SAP432/2020
 AT1- C222T C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_508127
 2020-03-21 2020-08-04
 Australia hCoV-19/Australia/SAP436/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_508129
 2020-03-21 2020-08-04
 Australia hCoV-19/Australia/SAP438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C16289T A23403G G25429T T28053C

EPI_ISL_508133
 2020-03-21 2020-08-04
 Australia hCoV-19/Australia/SAP442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A A8651C G11083T C13730T C23929T C28311T C28844T

EPI_ISL_508142
 2020-03-21 2020-08-04
 Australia hCoV-19/Australia/SAP452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T G28541T

EPI_ISL_508743 MT834625
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0540/2020
 AT1- C241T C601T C3037T C8389T C14408T A17521G A22206G A23403G G25563T G27915A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_508744 MT834626
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0541/2020
 AT1- C241T C3037T A7757G C8389T C14408T A23403G G25563T G27915A C28550A C29323T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_508781 MT834623
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0577/2020
 ATTA1- C241T C313T C3037T C14408T A23403G GGG28881AAC C29614T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508782 MT834624
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0578/2020
 A1- C241T C313T C3037T C14408T A23403G GGG28881AAC C29614T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_508786 MT834630
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0582/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25471C G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508790 MT834634
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0586/2020
 A1- C241T C1059T C3037T T3499C C11916T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_508791 MT834635
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0587/2020
 AT1- C241T C1059T C3037T C14408T T22741C A23403G G25563T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_508793 MT834637
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0589/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T C21110T A23403G G25563T C27964T C28846T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_508803 MT834647
 2020-03-21 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0599/2020
 AT1- C8782T C16457T C17747T A17858G C18060T T28144C T28204C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508949
 2020-03-21 2020-08-04
 France hCoV-19/France/ARA12155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C241T C3037T C14408T C15324T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_509005
 2020-03-21 2020-08-04
 France hCoV-19/France/ARA12151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T G28423A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_509512
 2020-03-21 2020-08-05
 Australia hCoV-19/Australia/NSW2233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25473C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509513
 2020-03-21 2020-08-05
 Australia hCoV-19/Australia/NSW2234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C2113T G10112T G11083T C14649T C18928T T28688C G29374A G29742T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509514
 2020-03-21 2020-08-05
 Australia hCoV-19/Australia/NSW2235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3140T C14408T A23403G C26082A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509703 MT844038
 2020-03-21 2020-08-05
 Guatemala SARS-CoV-2/human/GTM/CDC-1236/2020
 C241T C3037T C14408T A20268G A23403G C25624T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_510964
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- T2233C A9634T G11083T C14805T C23707T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510965
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A3859G C11074T G11083T C14805T C16551T T17247C G26144T C29067T A29598G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511085
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25429T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511086
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T C14786T T18623C C19884T G22093A A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511087
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T G18756T A23403G C26058T A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511089
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20453G A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511090
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G19677T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511091
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT0832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511234
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT1273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G5665A C11001T G11083T G26144T G28001T A29763T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511236
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT1275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C3045T G11083T T14295C C16985T C19273T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511237
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT1276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T25159C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511397
 2020-03-21 2020-08-07
 Portugal hCoV-19/Portugal/PT1438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511541
 2020-03-21 2020-08-08
 Portugal hCoV-19/Portugal/PT0993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G5230T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512412
 2020-03-21 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D209C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T C26340T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512495
 2020-03-21 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C6990T C14408T A23403G C29200T

EPI_ISL_512658
 2020-03-21 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T A18196C A23403G CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_513301 MT704819
 2020-03-21 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_4ZK/2020
 C241T C3037T C14408T A23403G C27213T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_513479 MT886353
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513480 MT886354
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C3037T C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513495 MT886370
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513500 MT886376
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCT1- C241T T1918C C3037T G11222T C14408T C18877T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513501 MT886377
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513502 MT886378
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513503 MT886379
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513504 MT886380
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGT1- C241T C3037T C14408T C22450T A23403G G26909T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513507 MT886383
 2020-03-21 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C3037T C5654T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514143 MT890280
 2020-03-21 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0797/2020
 A1- A187G C241T C3037T C14408T A15668G C20233T A23403G TCTCTA25707- GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514486
 2020-03-21 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D20E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T C26340T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515317
 2020-03-21 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0031/2020
 ATTA1- C8782T G11083T C17747T A17858G C18060T G20237T G22661T G25284T T28144C

EPI_ISL_515318
 2020-03-21 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0032/2020
 ATTA1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515319
 2020-03-21 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0033/2020
 ATTA1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515320
 2020-03-21 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0034/2020
 ATTAAAGGTTTATACCTTC1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_518822
 2020-03-21 2020-08-25
 Oman hCoV-19/Oman/RESP-20-4395/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A6466G C14408T A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_518876 MT920015
 2020-03-21 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G G25644T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_518878 MT920017
 2020-03-21 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1484/2020
 A1- C241T C3037T C14408T A23403G G25644T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862C

EPI_ISL_518885 MT920025
 2020-03-21 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T A17858G C18060T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518886 MT920026
 2020-03-21 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G G25644T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518889 MT920029
 2020-03-21 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1496/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_518891 MT920031
 2020-03-21 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G G25644T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_523288
 2020-03-21 2020-08-26
 Netherlands hCoV-19/Netherlands/LI-EMC-83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26305T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524464
 2020-03-21 2020-08-28
 Brazil hCoV-19/Brazil/SP-276/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T A6319G C14408T A23403G G25088T T26149C G28487A GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_525624
 2020-03-21 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-24516-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_525625
 2020-03-21 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-25458-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C2676T T6329C C8782T A22606T T28144C G28878A G29742A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_528283
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12076T T12739C C14408T C15324T A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528284
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G C25046T G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528285
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C9693T C14408T T17838C A23403G G25563T G26450T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528286
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C9693T C14408T T17838C A23403G G25563T G26450T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528287
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G6553T C8950T C13862T C14408T A23403G C28836T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528288
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G6553T C8950T C13862T C14408T A23403G C28836T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528292
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528293
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1008T C3037T C14408T C15324T A23403G G24755T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528294
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528296
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528297
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3305G A3904G C14408T C15324T A23403G T23489C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528299
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528301
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42201578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C22277A A23403G C27046T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528302
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G ACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29761-

EPI_ISL_528304
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528309
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T C21911T A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528310
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528311
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7735T C14408T C15324T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528312
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42201778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C21846T A23403G AGAGGCGGCAGTCAAGCCTCTTCT28802- TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_528313
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42201781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G T25715C GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_528325
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T5941A C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528326
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_528327
 2020-03-21 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C13957T C14408T C15324T G15982T T18436C C21648T A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_530042
 2020-03-21 2020-09-10
 Spain hCoV-19/Spain/MD-LP113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T7098C T28835C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530260
 2020-03-21 2020-09-11
 Australia hCoV-19/Australia/QLD980/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C9996T C11074T G11083T C14408T A23403G G24781T G25563T G28077T

EPI_ISL_530262
 2020-03-21 2020-09-11
 Australia hCoV-19/Australia/QLD982/2020/P1
 AT1- G374A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_534844
 2020-03-21 2020-09-14
 United Kingdom hCoV-19/England/OXON-B31FA/2020
 A1515G C3140T C9223T C10277T G11083T C14805T T17247C G25906T G26144T

EPI_ISL_534860
 2020-03-21 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3497/2020
 C241T C3037T T12139C C14408T G22346T A23403G GGG28881AAC

EPI_ISL_534871
 2020-03-21 2020-09-14
 United Kingdom hCoV-19/England/OXON-B35D0/2020
 C241T C3037T G10097A C14408T C19862T A23403G C23731T G28580T GGG28881AAC C29686T A29903-

EPI_ISL_534889
 2020-03-21 2020-09-14
 United Kingdom hCoV-19/England/OXON-B37F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C1913T A2224G G11083T C14805T G16075T G26144T G28842T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_535025
 2020-03-21 2020-09-14
 United Kingdom hCoV-19/England/PORT-2D208D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535902
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535907
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00229952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G17944T G24794T G26144T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535909
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2764T C3037T C14408T A23403G G25217T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535910
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535911
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T A11600G T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535912
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T G16396T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535913
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T G1397A G8653T G11083T T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535914
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535915
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535916
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535917
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535918
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G27877T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535919
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535920
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3195G C12754T C14408T C14649T C18431T A20268G A23403G C27559T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535922
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535923
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1912T C3037T C14408T C19366T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535926
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G29243A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535927
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18027A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535928
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A17799G C23127T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535929
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535930
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535931
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535932
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535933
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230798/2020
 ATT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A C28695T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535934
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535935
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535936
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G167T C241T C1059T C3037T C14408T G18534A A23403G C24157T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535937
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230882/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3483A C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535938
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230895/2020
 ATTA1- C241T C722T C3037T C5730T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535941
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G17280T C17747T A17858G C18060T A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535942
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12885T C14408T A19526C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535943
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12885T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535945
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535959
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535969
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232004/2020
 ATTAAA1- C241T G669T C3037T C14408T G15732T T19143C A20268G A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535989
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232601/2020
 ATTAAA1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_535991
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C788Y A1515G C9223T G11083T C14805T T17247C A17799G G26144T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536238
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239209/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A34W C241T G1186A C2416T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536239
 2020-03-21 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239235/2020
 ATTA1- C241T G1186A C2416T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536556
 2020-03-21 2020-09-16
 Peru hCoV-19/Peru/CAL-INS-163/2020
 ATTAAAG1- C843T C8782T C26088T T28144C

EPI_ISL_537841
 2020-03-21 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_537842
 2020-03-21 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C18877T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538443
 2020-03-21 2020-09-17
 Singapore hCoV-19/Singapore/916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11083T C14408T G17259T A23403G G25563T A27736G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538450
 2020-03-21 2020-09-17
 Singapore hCoV-19/Singapore/919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538991
 2020-03-21 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A83F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539526
 2020-03-21 2020-09-18
 Spain hCoV-19/Spain/CM-ISCIII-202018188/2020
 C241T G1738T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_548979
 2020-03-21 2020-09-28
 Singapore hCoV-19/Singapore/971/2020
 ATTAAA1- T65Y C241T C2724T C3037T C14408T A20268G A23403G C28854T C29614T AAAAAAAAAAAA29892-

EPI_ISL_560624
 2020-03-21 2020-09-29
 France hCoV-19/France/GE8782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G28690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561351
 2020-03-21 2020-09-30
 United States hCoV-19/USA/DE-DHSS-F918676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C379A C1059T C3037T C14408T C22480T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_568516
 2020-03-21 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T G10265A C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_569601
 2020-03-21 2020-10-02
 France hCoV-19/France/IHU-0580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T T19839C A23403G GGG28881AAC TGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29772-

MT345802
 2020-03-21 2020-04-14
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-2069/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T A29901G A29903G

MT371570
 2020-03-21 2020-04-15
 Czech Republic SARS-CoV-2/human/CZE/CzechiaMotol_2448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C14408T A21643C A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT477843
 2020-03-21 2020-05-14
 United States SARS-CoV-2/human/USA/AK037/2020
 ATTAAAGGTTTAT1- T2266C C6027T A10236G G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT509452
 2020-03-21 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509468
 2020-03-21 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T C18508T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT670021
 2020-03-21 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-29192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706307
 2020-03-21 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9510T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706308
 2020-03-21 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706324
 2020-03-21 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT772088
 2020-03-21 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-06/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C1929T C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

MT772089
 2020-03-21 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-07/2020
 ATTA1- G8A C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

MT772090
 2020-03-21 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-08/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G3871T C14408T A23403G C29614T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

MT772091
 2020-03-21 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-09/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T T10771C C17747T A17858G C18060T T28144C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

MT810566
 2020-03-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0438-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- GTTATG515- C1059T C3037T C5467T C14408T A23403G G25563T T27863C T28135C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810571
 2020-03-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0445-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T A24694T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810955
 2020-03-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0248-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810969
 2020-03-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0310-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MW030223
 2020-03-21 2020-09-22
 Peru SARS-CoV-2/human/PER/covper087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C843T C8782T C26088T T28144C C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013260
 2020-03-21 2020-06-01
 China hCoV-19/Guangzhou/ID015/2020
 T2C C6312A G11083T C13730T G20274T C23929T C25669T C28311T A29850G G29868M

EPI_ISL_418648
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C679T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418650
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1957T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418654
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418655
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418656
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418657
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A618G C3037T C14408T C15024T C15324T A23403G C27679T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418659
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418663
 2020-03-22 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T C25703A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419177
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12125/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T G25909T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419178
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12217/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419179
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12222/2020
 C241T C3037T C14408T A23403G G25563T G25690T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419180
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12238/2020
 C241T C3037T C7844A C14408T C15324T C20178T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419181
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12249/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419182
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12250/2020
 C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419183
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12253/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29530A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419184
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12260/2020
 C241T C3037T C14408T A23403G G25563T T27296C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419185
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12264/2020
 C241T C3037T A11935C C14408T C15324T A23403G T27419C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419186
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12265/2020
 C241T C3037T A11935C C14408T C15324T A23403G G23628T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_419187
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12269/2020
 C241T C3037T C5544T A10990G C14408T A23403G G24751T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_419188
 2020-03-22 2020-04-01
 France hCoV-19/France/ARA12270/2020
 C241T C1059T C3037T C14408T C18029T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419673
 2020-03-22 2020-04-03
 Austria hCoV-19/Austria/CeMM0020/2020
 C241T C920Y C3037T A5829R C14408T A20268G A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_419827 MT451038
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC134/2020
 ATTA1- C241T C2507T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_419828 MT451039
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A25449G GGG28881AAC C29870M

EPI_ISL_419829 MT451040
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC136/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G AA29902-

EPI_ISL_419830 MT451041
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC137/2020
 ATTA1- C241T C3037T C13740T C14408T C15324T C23206T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_419957 MT451160
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC264/2020
 ATTAAA1- C241T G613A C3037T C14408T G15898T G22346A A23403G

EPI_ISL_419958 MT451161
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC265/2020
 ATTA1- C8782T C17747T A17858G C18060T A24694T T28144C T28853K

EPI_ISL_419959 MT451162
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G613A C3037T C14408T G22346A A23403G

EPI_ISL_419960 MT451163
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G17562T A23403G G25563T

EPI_ISL_419961 MT451164
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2110Y A7479G C11074T G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_419962 MT451165
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C7732T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_419963 MT451166
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C29739T

EPI_ISL_419964 MT451167
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G C29739T

EPI_ISL_419965 MT451168
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC272/2020
 C1076T G1397A G11083T C27964T T28688C G29742T

EPI_ISL_419966 MT451169
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC273/2020
 A187G C241T C3037T C14408T A23403G C25916T

EPI_ISL_419967 MT451170
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC274/2020
 AT1- A4C C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_419968 MT451171
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G G25429T C26461T

EPI_ISL_419969 MT451172
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC276/2020
 ATTAAAGGTTTA1- C6312A G11083T C13730T C21789T C23929T C23934T C28311T T28963A

EPI_ISL_419970 MT451173
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC277/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_419971 MT451174
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC278/2020
 ATTA1- C241T C3037T C7165T T11959C C14408T A20268G A23403G

EPI_ISL_419972 MT451175
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC279/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_419973 MT451176
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC280/2020
 ATTAAAGGTT1- C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G

EPI_ISL_419974 MT451177
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC283/2020
 A1- C241T C3037T C14408T C15324T G15982T A23403G G28233T

EPI_ISL_419975 MT451178
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC284/2020
 ATTAA1- C241T C3037T C14408T A23403G C29739T

EPI_ISL_419976 MT451179
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_419977 MT451180
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC286/2020
 AT1- C241T C3037T C14408T C15324T A23403G C25710T

EPI_ISL_419978 MT451181
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC287/2020
 AT1- C241T C1059T C3037T C14408T A23403G C24797T G25563T

EPI_ISL_419979 MT451182
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC288/2020
 ATTAAAGGTTTATACC1- G957A A1547G G7042T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_419980 MT451183
 2020-03-22 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC289/2020
 A1- C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_420021 MT322418
 2020-03-22 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0039/2020
 ATTAAAG1- C241T C1059T C3037T C14408T C14925T A23403G G25563T C29870A

EPI_ISL_420022 MT322419
 2020-03-22 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0040/2020
 ATTA1- C241T C1059T C3037T C14408T C14925T A23403G G25563T A27421G C29870A

EPI_ISL_420032
 2020-03-22 2020-04-04
 Democratic Republic of the Congo hCoV-19/DRC/236/2020
 ATTAAA1- C241T C1218T C3037T C8293T C14408T T18488C A23403G T24739C A26530G GAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29755-

EPI_ISL_420033
 2020-03-22 2020-04-04
 Democratic Republic of the Congo hCoV-19/DRC/241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T T19839C A23403G G23868T C24099T GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_420035
 2020-03-22 2020-04-04
 Democratic Republic of the Congo hCoV-19/DRC/248/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C15324T A23403G GAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29755-

EPI_ISL_420056
 2020-03-22 2020-04-04
 France hCoV-19/France/HF3138/2020
 C241T C1059T C3037T C14408T C23029T A23403G G25563T A26459G TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_420057
 2020-03-22 2020-04-04
 France hCoV-19/France/HF3141/2020
 C241T G914A C1059T C3037T C14408T A20766G G21220A A23403G G24332T G25563T G26262A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420063
 2020-03-22 2020-04-04
 France hCoV-19/France/IDF3230/2020
 C241T C3037T C14408T C15324T A23403G C27208T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_420238
 2020-03-22 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C051C/2020
 C241T C1059T C3037T C10138T C14408T A23403G G25563T G25906T

EPI_ISL_420270
 2020-03-22 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0707/2020
 C241T C2940T C3037T C14408T C19524T T21467C A23403G

EPI_ISL_420598
 2020-03-22 2020-04-06
 Argentina hCoV-19/Argentina/C3013/2020
 C241T C3037T T10561C C14408T C15324T A23403G C28844T

EPI_ISL_420605
 2020-03-22 2020-04-06
 France hCoV-19/France/ARA12384/2020
 C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420606
 2020-03-22 2020-04-06
 France hCoV-19/France/ARA12388/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420951
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-24CF3/2020
 G1440A G2891A C25669T G28851T AAA29901-

EPI_ISL_420960
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-24F72/2020
 G1440A G2891A C4795T G28851T AAAAAAAAA29895-

EPI_ISL_420961
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-24F81/2020
 ATTA1- G1440A G2891A C25669T G28851T G29737S

EPI_ISL_420969
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25111/2020
 AT1- G1440A G2891A G28851T AAAAAAAAA29895-

EPI_ISL_420970
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25120/2020
 G1186C G1440A G2891A T6954C C9857T T24685C G28851T

EPI_ISL_420974
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-2516C/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_420976
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-251B7/2020
 C8290T G11083T C14805T T17247C G26144T

EPI_ISL_420977
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-2523C/2020
 C241T C3037T T3100G G10097A C14408T A22190R A23403G C23731T G25947T GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_420978
 2020-03-22 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-253B1/2020
 C241T C3037T C14408T C16260T G17944T C21622T A23403G

EPI_ISL_421295
 2020-03-22 2020-04-07
 United States hCoV-19/USA/WI-UW-37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421297
 2020-03-22 2020-04-07
 United States hCoV-19/USA/WI-UW-39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T G20326A T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421303
 2020-03-22 2020-04-07
 United States hCoV-19/USA/WI-UW-45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421304
 2020-03-22 2020-04-07
 United States hCoV-19/USA/WI-UW-46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421323
 2020-03-22 2020-04-07
 United States hCoV-19/USA/WI-UW-65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G A27338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421334
 2020-03-22 2020-04-07
 United States hCoV-19/USA/WI-UW-76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421485
 2020-03-22 2020-04-08
 Portugal hCoV-19/Portugal/PT0082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421486
 2020-03-22 2020-04-08
 Portugal hCoV-19/Portugal/PT0083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421487
 2020-03-22 2020-04-08
 Portugal hCoV-19/Portugal/PT0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C1473T C3037T C9073T G12014A C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421488
 2020-03-22 2020-04-08
 Portugal hCoV-19/Portugal/PT0085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G G25593T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421490
 2020-03-22 2020-04-08
 Portugal hCoV-19/Portugal/PT0087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421491
 2020-03-22 2020-04-08
 Portugal hCoV-19/Portugal/PT0088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421492
 2020-03-22 2020-04-08
 Portugal hCoV-19/Portugal/PT0089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C6633T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421651
 2020-03-22 2020-04-09
 Taiwan hCoV-19/Taiwan/225/2020
 ATTAAA1- C241T C3037T C6861T C12754T C14408T C19170T G19509A A23403G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_422519 MT371022
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C1917T C3037T C14408T G20005A T21458C A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_422521 MT370930
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_422522 MT370922
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- A2745T G11083T C14805T T17247C G26144T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422524 MT370978
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T G21520T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422525 MT371034
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422529 MT371008
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422530 MT371025
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C619T C1059T C3037T C5575T C14408T A14912G A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422555 MT371002
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C4575T C14408T C18486T A23403G TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_422559 MT370924
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T C14408T A23403G G25563T AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_422560 MT370974
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C10335T C14408T C18877T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_422561 MT371016
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_422562 MT371017
 2020-03-22 2020-04-11
 United States SARS-CoV-2/human/USA/NY-PV09309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1267T C3037T G4255T C14408T T16456G C20051T A23403G A26530G GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_422706 LR877775
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422707 LR877786
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422708 LR877776
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T G28985T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422709 LR877774
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T C19813T A20251G A23403G A24010C G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422711 LR877777
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422712 LR877779
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11596T C14408T G23126T A23403G G25606T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422716 LR877789
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C2485T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422719 LR877799
 2020-03-22 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423712
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132003204/2020
 C241T C3037T C14408T A23403G G25907K GGG28881AAC

EPI_ISL_423734
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132018804/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_423735
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132018904/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_423772
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132032604/2020
 C21T C241T C313T C3037T G10105T G11221T C14408T A20055R A23403G C25904T GGG28881AAC

EPI_ISL_423775
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132032904/2020
 A2480G C2558T C4586Y G11083T C14805T G26144T

EPI_ISL_423818
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132090404/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_423823
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132091704/2020
 C241T C3037T C6861T C14408T C19170T G19509A A23403G T27844G GGG28881AAC

EPI_ISL_423824
 2020-03-22 2020-04-12
 United Kingdom hCoV-19/England/20132091804/2020
 A1399T A2480G C2558T C7279T G11083T G14187A C14805T G26144T

EPI_ISL_424244 MT326169
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACG1- C241T C1059T C3037T C5005T C14408T A23403G G25563T A29903-

EPI_ISL_424256 MT326092
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1774/2020
 ATTAAAGGTTT1- C241T C1059T C1473T C3037T C14408T A23403G G23426A G25563T G29553A AA29902-

EPI_ISL_424257 MT326093
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A34W C241T C3037T C14408T G16075T T18689A C20031A A23403G C27046T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424258 MT326094
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C8782T C17747T A17858G C18060T C25614T T28144C AAAAAA29898-

EPI_ISL_424259 MT326095
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1797/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904ANATANA

EPI_ISL_424260 MT326096
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- AACC34TTTA C241T C1059T C3037T C10319T C14408T A20755C A23403G G25563T G25677T -29904G

EPI_ISL_424262 MT326098
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- CC36TA C8782T C17747T A17858G C18060T G21770T T27384C T28144C A29903-

EPI_ISL_424263 MT326099
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1799/2020
 ATTAAAGGT1- C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424264 MT326100
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1805/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T G17427T C17747T A17858G C18060T T28144C AAAAA29899-

EPI_ISL_424267 MT326103
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-1817/2020
 ATTAAAG1- G8C TACCTTCCCAGGTAACAAACCAACC13- C8782T C17747T A17858G C18060T T28144C C28887T AAA29901-

EPI_ISL_424268 MT326104
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-1816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C8782T C17747T A17858G C18060T T28144C C28887T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424269 MT326105
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1828/2020
 ATTAAAGGTTTAT1- CCCAGGTAACAAACCAA19- CC36TH C1457T A6693G C8266T C8782T C14877T C17747T A17858G C18060T C20148T T28144C A29188T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_424270 MT326106
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1831/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C12880T C14408T C15480T A23403G G25563T G29553A -29904AAAAAAAAAGAA

EPI_ISL_424274
 2020-03-22 2020-04-12
 United States hCoV-19/USA/WA-UW-1824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C36Y C241T C1059T C3037T C14408T -23192AATGGTTTAATAGGCACAGGTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN C23202T A23403G G25563T -28669GGTTGCAACTGAGGGAGCCTTGAATACACCAAAAGATCACATTGGCACCCGCAATCCTGCTAACTATGCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A28733T G29553A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_424276 MT326111
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- G3231T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_424318 MT326071
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/ID-UW-1938/2020
 ATTAAAGGTTTATAC1- AACC34HTTH C241T T833C C1059T C3037T GATATGGTT11267- C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424331 MT326083
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGT1- C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_424332 MT326084
 2020-03-22 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C3373A C9733T C12778T C14408T C20457T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_424649
 2020-03-22 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10082/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_424650
 2020-03-22 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10094/2020
 C241T C679T C3037T C6701T C14408T C15324T A22280C A23403G

EPI_ISL_424651
 2020-03-22 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10095/2020
 G1440A G2891A C26340T

EPI_ISL_424660
 2020-03-22 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10051/2020
 C241T C3037T G4255T C14408T G18756T A23403G A26530G

EPI_ISL_424661
 2020-03-22 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10053/2020
 C241T C3037T C14408T T15978C G17049T A21868T A23403G G24794T GGG28881AAC

EPI_ISL_424662
 2020-03-22 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10061/2020
 C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC

EPI_ISL_425316
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74614/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_425317
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74623/2020
 C1314T G11083T C14805T T17247C G26144T

EPI_ISL_425548
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E46F/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425549
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E47E/2020
 A2480G C2558T G11083T C14805T G20580T G26144T G28878T

EPI_ISL_425551
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E49C/2020
 A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_425554
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E4C9/2020
 ATG1605- A1904G G2123A C5826T C8090T C10789T

EPI_ISL_425868
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB070/2020
 C241T C3037T C14408T T16203C A20268G A23403G G29734C

EPI_ISL_425892
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB102/2020
 C988T G11083T C14805T T17247C G26144T C26735T C29585T

EPI_ISL_425893
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB103/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_425896
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB108/2020
 A2480G C2558T G11083T C14805T G20679T G26144T

EPI_ISL_425897
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB109/2020
 C241T C1059T C1609T C3037T T3331C C5869T C12400T C14408T A23403G G25563T

EPI_ISL_425899
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB111/2020
 C241T C3037T C14408T C15324T C20555T A23403G G28374A C29171T

EPI_ISL_425900
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB113/2020
 C241T C3037T A3911G C14408T C16694T A23403G C26028T

EPI_ISL_425904
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB120/2020
 C241T C3037T T3100G G10097A G10870T C14408T C17939T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_425917
 2020-03-22 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB149/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_426295
 2020-03-22 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-27073-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11139T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426318
 2020-03-22 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-26551-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18877T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426670 MT451253
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC362/2020
 AT1- C241T C3037T G3259A C14408T C17397T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_426672 MT451255
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC364/2020
 ATTA1- G374A C6936T C8782T C17747T A17858G C18060T C25546A T28144C

EPI_ISL_426673 MT451256
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC365/2020
 A1- G957A A1547G C8782T C10036T C17747T A17858G C18060T T28144C

EPI_ISL_426674 MT451257
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC366/2020
 ATTA1- C241T C3037T G3259A C14408T C17397T A23403G GGG28881AAC G28904T

EPI_ISL_426675 MT451258
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC367/2020
 A1- C8782T T9477A C14805T G25979T T28144C C28657T C28760A C28863T

EPI_ISL_426676 MT451259
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC368/2020
 ATTA1- C241T C3037T G3564T A4987G C14408T C18431T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_426677 MT641664
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC369/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T G3564T A5353W G11535T G13571K C14408T C17403T C21711T A23403G G24933T G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_426680 MT451261
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC373/2020
 ATTA1- C241T A23403G G25979T

EPI_ISL_426682 MT451263
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC375/2020
 ATTAAAGGT1- C241T C3037T G3564T G9802T C14408T A20268G A23403G G24933T

EPI_ISL_426683 MT451264
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC376/2020
 ATTAAAG1- C241T G247T C379A C1059T C3037T C14408T C22224T A23403G G25563T G27163T

EPI_ISL_426684 MT451265
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T G3564K C14408T A23403G GGG28881AAC G29254T

EPI_ISL_426685 MT641665
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC378/2020
 C3096T G3564T G11083T C12781T G13627T C14805T C15540T G17944T G24933T G26144T A28338G

EPI_ISL_426706 MT641669
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC403/2020
 A1- C3096T G3564T G8790K G11083T C12781T G13627T C14805T C15540T G17944T G24933T G26144T A28338G

EPI_ISL_426779 MT641682
 2020-03-22 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC509/2020
 C3096T G3564T G11083T C12781T G13627T C14805T C15540T G17944T G24933T G26144T A28338G

EPI_ISL_427278
 2020-03-22 2020-04-17
 United States hCoV-19/USA/MN-MDH-138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15738T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427282
 2020-03-22 2020-04-17
 United States hCoV-19/USA/MN-MDH-143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C20762T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427283
 2020-03-22 2020-04-17
 United States hCoV-19/USA/MN-MDH-144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T19527C A23403G G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427284
 2020-03-22 2020-04-17
 United States hCoV-19/USA/MN-MDH-145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T19527C A22512M A23403G G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427285
 2020-03-22 2020-04-17
 United States hCoV-19/USA/MN-MDH-146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y C1059Y C3037Y C14408Y A23403R G25563K T28144Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427298
 2020-03-22 2020-04-18
 Brazil hCoV-19/Brazil/DF-891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_427394
 2020-03-22 2020-04-18
 Taiwan hCoV-19/Taiwan/TSGH-07/2020
 C241T C3037T C14408T C15324T A22404T A23403G -29904TAAAAAAAAAAAAAAAAAAAAAAAAATAAACAAAAAAAAAAAAAAAAAAAAAAAACAAAAAGAGGAACAAATTAAAAAAAACAGAAAATAAGTGAAATCTGAAAGACGAAAAAAAAAGCAAAAGAAAAACCAAGAAAAAAAAAAAATAAAAAAC

EPI_ISL_427680
 2020-03-22 2020-04-19
 Australia hCoV-19/Australia/NSW90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAA1- T1368C C6990T G11083T C14805T C20736T C23707T G26144T ATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29677-

EPI_ISL_428277
 2020-03-22 2020-04-20
 United States hCoV-19/USA/WI-UW-181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428278
 2020-03-22 2020-04-20
 United States hCoV-19/USA/WI-UW-182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428279
 2020-03-22 2020-04-20
 United States hCoV-19/USA/WI-UW-183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C28310A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428280
 2020-03-22 2020-04-20
 United States hCoV-19/USA/WI-UW-184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G G29315T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428281
 2020-03-22 2020-04-20
 United States hCoV-19/USA/WI-UW-185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428686
 2020-03-22 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_23/2020
 A1C AAGGTTTATACCTTCCCAGGT5- C241T C3037T C14408T A20268G A23403G T29848A ATAGCTT29850- C29857T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_428687
 2020-03-22 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_24/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G C27538T G29734C T29848A A29850T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_428688
 2020-03-22 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_25/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C25728T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_428711
 2020-03-22 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_4112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12849A C14408T A20268G A23403G G26109T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428722
 2020-03-22 2020-04-21
 Turkey hCoV-19/Turkey/HSGM-8010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T C12741T T28688C G29742T

EPI_ISL_428723
 2020-03-22 2020-04-21
 Turkey hCoV-19/Turkey/HSGM-8964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G881A C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_428887
 2020-03-22 2020-04-22
 Russia hCoV-19/Russia/Moscow-77610/2020
 C241T G1355T C3037T G10097A C14408T G17964T A23403G C23731T GGG28881AAC

EPI_ISL_428889
 2020-03-22 2020-04-22
 Russia hCoV-19/Russia/Moscow-77620/2020
 C241T G1355T C3037T G10097A C14408T G17964T A23403G C23731T GGG28881AAC

EPI_ISL_428903
 2020-03-22 2020-04-22
 Russia hCoV-19/Russia/Primorskiy-79001/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428904
 2020-03-22 2020-04-22
 Russia hCoV-19/Russia/Vector_77628/2020
 C241T C1059T C3037T C14408T A18093G A23403G G25563T

EPI_ISL_429199
 2020-03-22 2020-04-23
 Switzerland hCoV-19/Switzerland/GE0636/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T G27561T

EPI_ISL_429479
 2020-03-22 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI374/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T C28854T

EPI_ISL_429480
 2020-03-22 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI375/2020
 C241T C1059T C3037T G4399T C14408T G19086T A23403G G25563T

EPI_ISL_429481
 2020-03-22 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI376/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429482
 2020-03-22 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI377/2020
 C241T C1059T C1347T C3037T C14408T G19086T A23403G G25563T

EPI_ISL_429519
 2020-03-22 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI420A/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429729
 2020-03-22 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS0481305/2020
 C241T C300T C1059T C3037T T13006C C13458T C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_429733
 2020-03-22 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS4423730/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_429760
 2020-03-22 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS0211710/2020
 C241T C2940T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_429778
 2020-03-22 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS2580723/2020
 C241T C3037T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_429861
 2020-03-22 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-8968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_429862
 2020-03-22 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-8970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G

EPI_ISL_429863
 2020-03-22 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-8975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G881A C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_429864
 2020-03-22 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-8979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G944A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429870
 2020-03-22 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-8990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C19170T A23403G C25275T GGG28881AAC

EPI_ISL_430242 MT632528
 2020-03-22 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S204/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430856
 2020-03-22 2020-04-28
 Sweden hCoV-19/Sweden/20-08687/2020
 C241T C3037T C14195A C14408T A23403G G28368A G28851T

EPI_ISL_430857
 2020-03-22 2020-04-28
 Sweden hCoV-19/Sweden/20-08691/2020
 G167T C241T C1059T C3037T C14408T A22780G A23403G G24368T G25563T

EPI_ISL_431782
 2020-03-22 2020-04-29
 China hCoV-19/Fujian/IM3520014T/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T C17502T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_432177
 2020-03-22 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-252F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T G21624T A23403G GGG28881AAC G29861R A29865R

EPI_ISL_432182
 2020-03-22 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2531B/2020
 C241T C3037T C6990T C14408T A23403G

EPI_ISL_432231
 2020-03-22 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2532A/2020
 A2480G C2558T G11083T C14805T G26144T G26426A

EPI_ISL_433407
 2020-03-22 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB112/2020
 C241T C3037T C14408T C15324T C17410T A23403G T25766C G28374A C29171T

EPI_ISL_434456
 2020-03-22 2020-04-29
 Greece hCoV-19/Greece/48/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C9430T T9477A C14805T A22151G G25979T T28144C C28657T C28863T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434639
 2020-03-22 2020-04-30
 United States hCoV-19/USA/DC-HP00043/2020
 C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_434691
 2020-03-22 2020-05-01
 United States hCoV-19/USA/DC-HP00022/2020
 A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T

EPI_ISL_434843
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH144/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434844
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH145/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_434845
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH146/2020
 T514C C17410T

EPI_ISL_434846
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH147/2020
 C241T C1059T C3037T C14408T G17808T A23403G G25563T T27384C C27964T

EPI_ISL_434847
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH148/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434849
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH150/2020
 C302T T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434850
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH151/2020
 C241T C1059T C3037T C14408T G21641T A23403G G25563T C27964T

EPI_ISL_434851
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH152/2020
 C241T C1059T C3037T C5575T C14408T G17808T A23403G G25563T C27964T

EPI_ISL_434852
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH153/2020
 C186T C241T C2416T C3037T C14408T A23403G G25563T G26233T C27881T

EPI_ISL_434853
 2020-03-22 2020-05-01
 United States hCoV-19/USA/TX-HMH154/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435045 MT428551
 2020-03-22 2020-05-02
 Kazakhstan SARS-CoV-2/human/KAZ/NCB-1/2020
 C884T G1397A TTG3333- C4234T G8653T G11083T T16272G C17141A T28688C

EPI_ISL_435405
 2020-03-22 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00126/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_435406
 2020-03-22 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00175/2020
 C241T C3037T C8293T A11839G C14408T C16575T T19839C A23403G GGG28881AAC

EPI_ISL_435407
 2020-03-22 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00183/2020
 C241T C1059T C3037T C14408T A23403G G25563T C28432T

EPI_ISL_435408
 2020-03-22 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00186/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_436041
 2020-03-22 2020-05-05
 United States hCoV-19/USA/DC-CDC-9092/2020
 C241T C1059T C3037T C14408T A23403G G25563T G27147T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436205
 2020-03-22 2020-05-06
 Spain hCoV-19/Spain/Valencia110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9515T C14408T A20268G A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436207
 2020-03-22 2020-05-06
 Spain hCoV-19/Spain/Valencia112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G1882T C3037T C14408T A23403G C29144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436397
 2020-03-22 2020-05-06
 Spain hCoV-19/Spain/Valencia302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A23403G C29144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_436831 MT439268
 2020-03-22 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3253T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436833 MT439282
 2020-03-22 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T177Y T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_436834 MT439271
 2020-03-22 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20160/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T T9370Y C14408T C18693Y A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437093
 2020-03-22 2020-05-08
 Latvia hCoV-19/Latvia/014/2020
 C241T C3037T T9727C C14408T C19488T C22712T A23403G GGG28881AAC

EPI_ISL_437212
 2020-03-22 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0011/2020
 C241T C313T C3037T C13059T C14408T A23403G GGG28881AAC

EPI_ISL_437230
 2020-03-22 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0031/2020
 C241T C3037T C14408T A23403G A25065G C27046T C28344A GGG28881AAC C29541T

EPI_ISL_437236
 2020-03-22 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0037/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437260
 2020-03-22 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0061/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437468
 2020-03-22 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah20/2020
 ATTAAAGGTTTATA1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A21137G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871T

EPI_ISL_437560
 2020-03-22 2020-05-11
 United States hCoV-19/USA/CA-SR0250/2020
 C241T C1059T A2018G C3037T C14408T A23403G G25563T

EPI_ISL_437583
 2020-03-22 2020-05-11
 United States hCoV-19/USA/CA-SR0201/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_437595
 2020-03-22 2020-05-11
 United States hCoV-19/USA/CA-SR0182/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_438083
 2020-03-22 2020-05-12
 Austria hCoV-19/Austria/CeMM0254/2020
 G11083T C14805T T17247C C21846T T22521K G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438084
 2020-03-22 2020-05-12
 Austria hCoV-19/Austria/CeMM0255/2020
 C241Y C3037Y C14408Y C16017Y T17247Y G20378K C21846Y T22521K C22624M A23403R G26144K G26792K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438085
 2020-03-22 2020-05-12
 Austria hCoV-19/Austria/CeMM0256/2020
 C241T C3037T G12832A C14408T C20457T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438086
 2020-03-22 2020-05-12
 Austria hCoV-19/Austria/CeMM0257/2020
 C241T C2003T C3037T C14408T A20268G T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438087
 2020-03-22 2020-05-12
 Austria hCoV-19/Austria/CeMM0258/2020
 C241T C3037T C14408T A23403G C24642T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_438124
 2020-03-22 2020-05-12
 Austria hCoV-19/Austria/CeMM0361/2020
 C241T C3037T C12073T C14408T T22521K A23403G C24642T C27046T G28395K GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_439070
 2020-03-22 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440018
 2020-03-22 2020-05-12
 United Kingdom hCoV-19/England/BRIS-122201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T25202K A27669G G29024K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440202
 2020-03-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-734A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C11074T G11083T C14805T T25202K G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440231
 2020-03-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-73484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G CC2558TT G11083T C14805T T25202K G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_441371
 2020-03-22 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-102058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C593Y C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441372
 2020-03-22 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-102067/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_441404
 2020-03-22 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-10235F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC

EPI_ISL_443282
 2020-03-22 2020-05-12
 France hCoV-19/France/B5458/2020
 C241T C3037T C14408T G20024T A23403G C27923T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_444611
 2020-03-22 2020-05-14
 Australia hCoV-19/Australia/QLDID937/2020
 ATTAAAGGTTTATACCTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_444983
 2020-03-22 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH5994/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_445166
 2020-03-22 2020-05-15
 United States hCoV-19/USA/CA-SR0312/2020
 C241T C3037T C14408T A21137G A23403G A26530G

EPI_ISL_445292
 2020-03-22 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_11/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23229G A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445299
 2020-03-22 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_15/2020
 ATT1GCA AA5CCT C241T C1059T C3037T C14408T A23403G G25563T C29358T G29861A ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_445355
 2020-03-22 2020-05-15
 Chile hCoV-19/Chile/Santiago_59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23348C A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_445368
 2020-03-22 2020-05-15
 Chile hCoV-19/Chile/Santiago_72/2020
 TTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC2- C241T G1319A C3037T C8389T C14408T A23403G G25563T G27439K TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447167 MT506663
 2020-03-22 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20196/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447174 MT506668
 2020-03-22 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20203/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447193 MT506666
 2020-03-22 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20223/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_447306
 2020-03-22 2020-05-17
 Israel hCoV-19/Israel/701002334/2020
 C241T C1059T C3037T C14408T G18079T G21123T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447307
 2020-03-22 2020-05-17
 Israel hCoV-19/Israel/701002327/2020
 C241T C829T C1059T G2095A C3037T G7295T C14408T C16575T G19800T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447319
 2020-03-22 2020-05-17
 Israel hCoV-19/Israel/51141225/2020
 C10369T G11083T C14805T T17247C C17676T G22865T G26144T G26660T C29627T AGT29746- AAAAAAAAAAAA29892-

EPI_ISL_447321
 2020-03-22 2020-05-17
 Israel hCoV-19/Israel/51141014/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC G28908T AAAAAAAAAAAA29892-

EPI_ISL_450008
 2020-03-22 2020-05-19
 United States hCoV-19/USA/NY-PV09316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_451084
 2020-03-22 2020-05-23
 Australia hCoV-19/Australia/SAP044/2020
 C241T C3037T C14408T C15324T G22918T A23403G G28690T

EPI_ISL_451195
 2020-03-22 2020-05-23
 Uganda hCoV-19/Uganda/UG013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CT92TY T104Y C106Y T115Y T141C T148Y T153Y T172Y T191Y C241T T249Y T262Y ACA328RSW C1473T AT2826RY C16523A A23403G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451411
 2020-03-22 2020-05-25
 United States hCoV-19/USA/NY-NYUMC696/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451429
 2020-03-22 2020-05-25
 United States hCoV-19/USA/NY-NYUMC714/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_451448
 2020-03-22 2020-05-25
 United States hCoV-19/USA/NY-NYUMC733/2020
 C241T C1059T C3037T C11224T C14408T C15720T A23403G G25563T

EPI_ISL_451453
 2020-03-22 2020-05-25
 United States hCoV-19/USA/NY-NYUMC738/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451964 MT635445
 2020-03-22 2020-05-26
 Russia SARS-CoV-2/human/RUS/SCPM-O-cDNA-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C241T C3037T C14408T A23403G CTA29788TGC AT29792GA -29796CTTCT GC29800AG AAT29805CG TGT29809CAA AT29815CG A29819C TTT29821GCC G29825C GT29828AA CTATCCC29831- GTG29841ACA T29846G T29848A -T29850CC GCT29853AGC C29857T TA29859CG G29862C A29866G ACAA29869GTCC AA29874GG AAAAAAAAAAAAAAAAAAAAAAAAAAA29877CG

EPI_ISL_451970 MT637143
 2020-03-22 2020-05-26
 Russia SARS-CoV-2/human/RUS/SCPM-O-cDNA-08/2020
 A1GGAGAACAGATCTACAAGAGA TA3CG -7AGTTGGTT C241T C3037T C3373A C14408T A23403G GGG28881AAC AA29872GT A29890T A29892C AAAAAAAA29894TTCTCTGC A29903GC

EPI_ISL_452181
 2020-03-22 2020-05-27
 Italy hCoV-19/Italy/VR_20COV10-41/2020
 ATTA1- C241T C3037T C8334T C14408T C20081T A23403G GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_452203
 2020-03-22 2020-05-27
 India hCoV-19/India/NIV-4367/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C7823T C8782T G22468T T28144C G28878A G29742A A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452339
 2020-03-22 2020-05-27
 China hCoV-19/Beijing/DT-travelUSA04/2020
 C241T C3037T A23403G

EPI_ISL_452341
 2020-03-22 2020-05-27
 China hCoV-19/Beijing/DT-travelMX01/2020
 C241T C3037T A23403G

EPI_ISL_452355
 2020-03-22 2020-05-27
 China hCoV-19/Beijing/DT-travelUK01/2020
 C241T T1372C C3037T T6552G C14408T A23403G GGG28881AAC

EPI_ISL_453484
 2020-03-22 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-102331/2020
 ATTA1- A187G C241T C3037T T8473C C14408T A23403G

EPI_ISL_453485
 2020-03-22 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-102340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_454163
 2020-03-22 2020-05-28
 Portugal hCoV-19/Portugal/PT0439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4201T C14408T A23403G C26527T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454243
 2020-03-22 2020-05-28
 Portugal hCoV-19/Portugal/PT0519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C26058T A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454244
 2020-03-22 2020-05-28
 Portugal hCoV-19/Portugal/PT0520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- A2480G C2558T G11083T C14805T G26144T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_454949
 2020-03-22 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-195/2020
 T12109C G17602T G29706T

EPI_ISL_455697
 2020-03-22 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1528/2020
 C241T C3037T C14408T A23403G C27635T C27874T GGG28881AAC

EPI_ISL_455963
 2020-03-22 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10175/2020
 C241T C3037T C6840T C9180T C11866T C14408T A23403G C27046T GGG28881AAC C29311T

EPI_ISL_455969
 2020-03-22 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10181/2020
 C241T G1274T C2113T C3037T C7765T C14408T T15225C C15928T C17690T C18877T A23403G G25563T

EPI_ISL_456187
 2020-03-22 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1076/2020
 C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G A29731G

EPI_ISL_456188
 2020-03-22 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1078/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456215
 2020-03-22 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1380/2020
 C8782T C17747T A17858G C18060T A24694T T28144C G28812T

EPI_ISL_456220
 2020-03-22 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1454/2020
 C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G

EPI_ISL_456221
 2020-03-22 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1499/2020
 G1440A G2891A C10507T A28675T

EPI_ISL_456257
 2020-03-22 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1798/2020
 G11083T C14805T C14928T T17247C G26144T

EPI_ISL_456258
 2020-03-22 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1799/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_457157
 2020-03-22 2020-06-02
 United Kingdom hCoV-19/England/EXET-135D0A/2020
 C241T C3037T C14408T A23403G C25350T C29028A

EPI_ISL_457991
 2020-03-22 2020-06-02
 Oman hCoV-19/Oman/RESP-20-4736/2020
 A1924G C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_457992
 2020-03-22 2020-06-02
 Oman hCoV-19/Oman/RESP-20-4810/2020
 C241T C3037T G10265A C14408T C16293T A23403G GGG28881AAC

EPI_ISL_458591
 2020-03-22 2020-06-04
 United Kingdom hCoV-19/England/NORT-288DBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G11083T C14805T T17247C C25701T G26144T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_459513
 2020-03-22 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-170310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C5986T C9223T G11083T C14805T T17247C T22965C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459867
 2020-03-22 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_460054
 2020-03-22 2020-06-05
 United States hCoV-19/USA/MN-MDH-150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5239T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_460097 MT520172
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00568/2020
 ATTAAAGGTTTATACCT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460118 MT520193
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00678/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460125 MT520200
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00562/2020
 ATTAAAGGTTTATA1- G105T C241T C3037T C14408T C18877T C21614T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460140 MT520215
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00569/2020
 ATTAAAGGTTTATACCTTCCCAG1- G2144T A2480G C2558T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460180 MT520255
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00570/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T T6069C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460186 MT520261
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00563/2020
 ATTAAAGGTTTATACCTT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460231 MT520306
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C2416T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460232 MT520307
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00555/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- T490A C3177T C8782T G18106T T18736C C24034T T26729C G28077C T28144C C28697T G29440A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460267 MT520342
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00681/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25352T G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460285 MT520360
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- T490A C3177T C8782T A10317G T13180C C16084T T18736C C24034T T26729C G28077C T28144C A29700G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_460316 MT520391
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00134/2020
 ATTAAA1- C241T C2416T C3037T C11752T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460423 MT520498
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T TGGTCATGTTATGGT508- C1059T C3037T C14408T A23403G G25563T G28980T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460465 MT520540
 2020-03-22 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T T956A C3037T C3241T C14408T T19225G A23403G A26530G G28851T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460695
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460697
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460700
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460820
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7749T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461150
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G14712T C16329T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461153
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461285
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T G4399T T13006C C14408T G19684T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461289
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461291
 2020-03-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462209
 2020-03-22 2020-06-08
 Belgium hCoV-19/Belgium/DC-0322355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9836A G10098A G11083T C11580T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462265
 2020-03-22 2020-06-08
 Belgium hCoV-19/Belgium/MT-0322411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3587T C14408T C21618T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462460
 2020-03-22 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7354/2020
 ATTAAAGGTTT1- C241T C3037T C10336T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462917
 2020-03-22 2020-06-08
 United States hCoV-19/USA/WY-WYPHL-00024/2020
 ATT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T AA29902-

EPI_ISL_463742
 2020-03-22 2020-06-10
 Cyprus hCoV-19/Cyprus/002/2020
 C241T A2869G C3037T C14408T C17733T A23403G GGG28881AAC C29095T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_468135
 2020-03-22 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-4284/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_468136
 2020-03-22 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-4322/2020
 ATTA1- C241T C3037T A7201G C14408T A20268G A23403G C27707T -29904AAAAAAAAAA

EPI_ISL_468137
 2020-03-22 2020-06-16
 Romania hCoV-19/Romania/Suceava-4682/2020
 ATTA1- C241T C3037T C3225A C14408T A20268G A23403G A23734G C27707T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_468310
 2020-03-22 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-144/2020
 G23T C241T C3037T G12111A C14408T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAA29891-

EPI_ISL_468515 MT628238
 2020-03-22 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C1091M C4776T C8782T C14267Y C17747T A17858G C18060T G28086T T28144C G29017K

EPI_ISL_469224
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T C18877T A23403G G24926T G25563T G28703K ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469226
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469228
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469233
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469234
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469235
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469236
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469237
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T19700Y A23403G G25563T T28930C ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469238
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469239
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25688T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_469240
 2020-03-22 2020-06-18
 Canada hCoV-19/Canada/NL_101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26625T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_470848
 2020-03-22 2020-06-19
 Australia hCoV-19/Australia/WA31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470872
 2020-03-22 2020-06-19
 Australia hCoV-19/Australia/WA55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471211
 2020-03-22 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471213
 2020-03-22 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C23525T C24034T T26729C A27234T C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471225
 2020-03-22 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471545
 2020-03-22 2020-06-22
 Brazil hCoV-19/Brazil/SP-601/2020
 C241T C3037T A6319G C14408T A23403G G25088T T26149C GGG28881AAC GG29861CA AAAAAAAAAAAAA29891-

EPI_ISL_475098
 2020-03-22 2020-06-23
 Sweden hCoV-19/Sweden/20-08328/2020
 C241T C3037T C14408T G21786A A23403G G25494T G29009A

EPI_ISL_475140
 2020-03-22 2020-06-23
 Sweden hCoV-19/Sweden/20-08339/2020
 C241T C3037T T4171C C14195A C14408T T14462C TT14466CC T14476C T14555C A19810G A19812G A19840G T20459C T21217C A21390G A21415G A21417G A21421G A21436G A21444G A23403G

EPI_ISL_475330
 2020-03-22 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D1121/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_475478
 2020-03-22 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CF4F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12885T G17110T C19011T G28221T G29032A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475578
 2020-03-22 2020-06-23
 United States hCoV-19/USA/CA-CSMC103/2020
 C241T C1059T A2018G C3037T C14408T C18029T A19453G A23403G G25563T

EPI_ISL_475584
 2020-03-22 2020-06-23
 United States hCoV-19/USA/CA-CSMC109/2020
 C241T C8782T TTGA18737- GGG28881AAC

EPI_ISL_475586
 2020-03-22 2020-06-23
 United States hCoV-19/USA/CA-CSMC110/2020
 C1929T A2767G T5290C T7402C C8782T T8850C C14614T T15818G C17333A C17747T A19574C G19599T C19698T G20580T G20922T T22587G T23158A T23336C G23508T G25278T C26124T C26728T C26894T T27444C T28144C C28278T

EPI_ISL_475589
 2020-03-22 2020-06-23
 United States hCoV-19/USA/CA-CSMC113/2020
 C241T T348A A1631C A6018G T6791A G6793T C6797G T8620C C10541A A12413C C18877T A23403G G25563T

EPI_ISL_475716
 2020-03-22 2020-06-23
 United States hCoV-19/USA/CA-CSMC99/2020
 C241T C3037T C12420T C13436T C14408T C18877T G21533A A23403G G25563T G27750A G28812T

EPI_ISL_475845
 2020-03-22 2020-06-25
 Austria hCoV-19/Austria/CeMM0417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5149K C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475864
 2020-03-22 2020-06-25
 Austria hCoV-19/Austria/CeMM0441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476819
 2020-03-22 2020-06-26
 Singapore hCoV-19/Singapore/274nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3351A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477175
 2020-03-22 2020-06-29
 Singapore hCoV-19/Singapore/485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- GTCATGTTA510- G29254A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477178
 2020-03-22 2020-06-29
 Singapore hCoV-19/Singapore/278nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477618
 2020-03-22 2020-06-29
 Hungary hCoV-19/Hungary/US-2587w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14937T C15324T T18495C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477680
 2020-03-22 2020-06-29
 United States hCoV-19/USA/ID-UW-2047/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T T833C C1059T C3037T C10833T C14408T C21575T A23403G G25563T C27964T C29870-

EPI_ISL_477681
 2020-03-22 2020-06-29
 United States hCoV-19/USA/ID-UW-2067/2020
 TAAAGGTTTATACCTTCCCAGGTAACAAA3- C36T C241T C1059T C3037T C14408T A16387T A23403G T24749C G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_478558
 2020-03-22 2020-06-30
 United Kingdom hCoV-19/England/NORT-28463D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478559
 2020-03-22 2020-06-30
 United Kingdom hCoV-19/England/NORT-28464C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478561
 2020-03-22 2020-06-30
 United Kingdom hCoV-19/England/NORT-284697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479625
 2020-03-22 2020-07-01
 Canada hCoV-19/Canada/NB-202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482583
 2020-03-22 2020-07-04
 China hCoV-19/Hangzhou/HZCDC7184F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C23575T A26939G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483007
 2020-03-22 2020-07-06
 United States hCoV-19/USA/MN-MDH-1286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T C28291T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_483090
 2020-03-22 2020-07-07
 Australia hCoV-19/Australia/SAP303/2020
 AT1- C4540T C8782T T9477A C14805T G25979T G27204T T28144C C28311T C28657T C28863T

EPI_ISL_483122
 2020-03-22 2020-07-07
 Australia hCoV-19/Australia/SAP346/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483124
 2020-03-22 2020-07-07
 Australia hCoV-19/Australia/SAP349/2020
 ATTA1- C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_484763
 2020-03-22 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485945
 2020-03-22 2020-07-10
 United States hCoV-19/USA/ID-UW-2041/2020
 T2G A6C A31T C36T C8782T C17747T A17858G C18060T C23635T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_486424
 2020-03-22 2020-07-10
 Latvia hCoV-19/Latvia/041/2020
 C241T C504T C2416T C3037T C14408T A23403G G25563T A27421G

EPI_ISL_486425
 2020-03-22 2020-07-10
 Latvia hCoV-19/Latvia/042/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_486426
 2020-03-22 2020-07-10
 Latvia hCoV-19/Latvia/044/2020
 G18445A C19488T

EPI_ISL_486428
 2020-03-22 2020-07-10
 Latvia hCoV-19/Latvia/045/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_486430
 2020-03-22 2020-07-10
 Latvia hCoV-19/Latvia/046/2020
 C241T C1218T C3037T C4230T T6168C G10447A C14408T C17104T C19813T A20268G A23403G T29317C G29734C

EPI_ISL_488490
 2020-03-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-284688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G6653A C9170T G11083T C14805T T25202K G26144T C26571T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488667
 2020-03-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-2844F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488747
 2020-03-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-281991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488759
 2020-03-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-281A8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488813
 2020-03-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-2819FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488825
 2020-03-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-2819A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G116R C241T C3037T C14408T C14724T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489708
 2020-03-22 2020-07-14
 Czech Republic hCoV-19/Czech Republic/NRL_5556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492136
 2020-03-22 2020-07-20
 Australia hCoV-19/Australia/SAP371/2020
 A1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28744T C28863T

EPI_ISL_492142
 2020-03-22 2020-07-20
 Australia hCoV-19/Australia/SAP377/2020
 AT1- G1440A G2891A C4668T T6668C G11083T

EPI_ISL_492144
 2020-03-22 2020-07-20
 Australia hCoV-19/Australia/SAP379/2020
 ATT1- C4540T C8782T T9477A C14805T T19551C G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492148
 2020-03-22 2020-07-20
 Australia hCoV-19/Australia/SAP383/2020
 ATTA1- C241T C1489T C3037T C14408T A20268G A23403G

EPI_ISL_492154
 2020-03-22 2020-07-20
 Australia hCoV-19/Australia/SAP389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C11355T C14408T A23403G C23683T GGG28881AAC

EPI_ISL_492163
 2020-03-22 2020-07-20
 Australia hCoV-19/Australia/SAP398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C4540T A8651C C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_492607
 2020-03-22 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130CA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T G22203T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492634
 2020-03-22 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130C5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C9541Y G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495012
 2020-03-22 2020-07-22
 Canada hCoV-19/Canada/LTRI-23/2020
 ATTAAAGGTTTAT1- C241T C1059T C1387T C3037T C14408T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495595
 2020-03-22 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S005727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7756T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497738
 2020-03-22 2020-07-25
 Colombia hCoV-19/Colombia/84730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497808
 2020-03-22 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T G1397A G9479T A9514G G11083T A23712G G26720C T28688C T28835C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497847
 2020-03-22 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17750T C18744T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498044
 2020-03-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2143/2020
 ATT1- C241T C3037T C14408T T19839C C21575T A23403G GGG28881AAC G29751A

EPI_ISL_498045
 2020-03-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C3037T C14408T A23403G G25563T G26769A

EPI_ISL_498046
 2020-03-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2145/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_498049
 2020-03-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2148/2020
 A1- A3058G C4093T G4127A G11083T C14805T T17247C G20041A G26109T G26144T

EPI_ISL_498050
 2020-03-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2149/2020
 ATTA1- C241T C1059T C3037T T4063C C14408T A23403G G25563T C26124T

EPI_ISL_498051
 2020-03-22 2020-07-26
 South Korea hCoV-19/Korea/KCDC2150/2020
 C241T C3037T C14408T G20176T A23403G GGG28881AAC

EPI_ISL_498264
 2020-03-22 2020-07-27
 Thailand hCoV-19/Thailand/Bangkok-CONI-0192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_499303
 2020-03-22 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D221E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T C26340T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499304
 2020-03-22 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D222D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T C9165T C9180T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500421
 2020-03-22 2020-07-28
 Spain hCoV-19/Spain/COV005987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G18816T A20268G A23403G C28854T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500427
 2020-03-22 2020-07-28
 Spain hCoV-19/Spain/COV005995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_500428
 2020-03-22 2020-07-28
 Spain hCoV-19/Spain/COV005996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_500515
 2020-03-22 2020-07-29
 United States hCoV-19/USA/GA-UW-MAYO64/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TH T490A C3177T A6355T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29700G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_500599
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17518T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500600
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2402A C3037T C14408T A20268G A23403G G29734C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500609
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500610
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500611
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500620
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500662
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500663
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500679
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500680
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27128T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500681
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500682
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500683
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500684
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G25879T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500686
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500687
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500690
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A15175G A23403G G29315T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500691
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500692
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8078T G10754A G11083T C14805T T17247C G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500694
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500697
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28068T G28077C T28144C A29700G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500698
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500699
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T C17104T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500700
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T C27964T C28099T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500701
 2020-03-22 2020-07-29
 Australia hCoV-19/Australia/NSW2266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17518T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501177
 2020-03-22 2020-07-31
 Malaysia hCoV-19/Malaysia/0309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T TA2922AT CA2937TG C3037T C14408T A23403G GGG28881AAC AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_507057
 2020-03-22 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D14B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C20844T A23403G C26534T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507058
 2020-03-22 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D15A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_507694
 2020-03-22 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T G1890K C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507704
 2020-03-22 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T C27494T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_507709
 2020-03-22 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_507905
 2020-03-22 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T A6505T C14408T A23403G G25563T C25976A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_508125
 2020-03-22 2020-08-04
 Australia hCoV-19/Australia/SAP434/2020
 ATTA1- G11083T C14805T G26144T C26606T G28842T A29903-

EPI_ISL_508126
 2020-03-22 2020-08-04
 Australia hCoV-19/Australia/SAP435/2020
 ATTA1- C28T C241T C3037T C14408T A23403G AA29902-

EPI_ISL_508139
 2020-03-22 2020-08-04
 Australia hCoV-19/Australia/SAP448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G15732T T19143C A20268G A23403G

EPI_ISL_508792 MT834636
 2020-03-22 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0588/2020
 ATTAAAGGT1- C241T C1059T C3037T C9924T C13911T C14408T G22363T A23403G G25563T C28948T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508863
 2020-03-22 2020-08-04
 Madagascar hCoV-19/Madagascar/Antananarivo-01861/2020
 ATTAAAGGTTT1- T13Y C241T C2416T C3037T C5884T C14408T A23403R G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508950
 2020-03-22 2020-08-04
 France hCoV-19/France/ARA12282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1426T C3037T C14408T C18029T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_508951
 2020-03-22 2020-08-04
 France hCoV-19/France/ARA12287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCA1- C241T C3037T C14408T C14676T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509006
 2020-03-22 2020-08-04
 France hCoV-19/France/ARA12197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C3096T C14408T A16070G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509493
 2020-03-22 2020-08-05
 Australia hCoV-19/Australia/NSW2034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509494
 2020-03-22 2020-08-05
 Australia hCoV-19/Australia/NSW2051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509515
 2020-03-22 2020-08-05
 Australia hCoV-19/Australia/NSW2236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509516
 2020-03-22 2020-08-05
 Australia hCoV-19/Australia/NSW2241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T C27999T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509517
 2020-03-22 2020-08-05
 Australia hCoV-19/Australia/NSW2273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509518
 2020-03-22 2020-08-05
 Australia hCoV-19/Australia/NSW2274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_510966
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6504A C14408T C15925T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511006
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0747a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T G376T C1059T C3037T T13006C C14408T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511008
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTA1- G1440A C2143T G2891A C10507T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511092
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511093
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T A13711G C14408T C14786T C19884T G22093A A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511094
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29711A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511095
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A7479G G11083T C14805T T17247C C25572T G26144T C28887T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511096
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29025T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511097
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511098
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511099
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511100
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G319T C3037T C5284T C11788T C14408T G22205T A23403G A26530G C27476T C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511101
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C5167T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511102
 2020-03-22 2020-08-07
 Portugal hCoV-19/Portugal/PT0843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511530
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G91A C241T C3037T G11083T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511531
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A10323G A12475G C13680T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511532
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C17104T A20268G A23403G C27230T G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511533
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C16887T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511542
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T G12442A C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511543
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511544
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11455T G13897T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511545
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T T7852C C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511546
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT0998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511549
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT1001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511719
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT1173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C19884T A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511720
 2020-03-22 2020-08-08
 Portugal hCoV-19/Portugal/PT1174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G13348T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512657
 2020-03-22 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC A29839G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_513302 MT704820
 2020-03-22 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_5ZK/2020
 C241T C3037T G3955T C14408T A23403G G25534T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_513303 MT704821
 2020-03-22 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_6ZK/2020
 C241T C3037T T3478A G3955T C14408T A23403G G25534T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_513304 MT704822
 2020-03-22 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_7ZK/2020
 C241T C3037T G3955T C14408T A23403G G25534T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_513497 MT886373
 2020-03-22 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C3037T C14408T C22450T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514465
 2020-03-22 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D175C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515181
 2020-03-22 2020-08-18
 Ghana hCoV-19/Ghana/KATH23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C203Y C8782T C24370T C25516Y G26363K T28144C G28878A G29402T G29742A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_515321
 2020-03-22 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0036/2020
 AT1- C241T C1059T G1942T C2395A C3037T C12241T C14408T A23403G G25563T A26644C

EPI_ISL_515545
 2020-03-22 2020-08-19
 Brazil hCoV-19/Brazil/SP-533/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C13721A C14408T A23403G G25088T GGG28881AAC G29862A GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_515551
 2020-03-22 2020-08-19
 Brazil hCoV-19/Brazil/SP-544/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C13356T C14408T A23403G G25088T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_516294
 2020-03-22 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C5301T C14408T G20356T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_516302
 2020-03-22 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C5986T C14408T C16470T A23403G G25563T C26645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516306
 2020-03-22 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21579/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_516803
 2020-03-22 2020-08-24
 Singapore hCoV-19/Singapore/831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T G13435A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518882 MT920022
 2020-03-22 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518883 MT920023
 2020-03-22 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1490/2020
 ATTAAAGGTTTATACC1- C241T C379A C1059T C3037T C14408T G18340A A23403G G24332T G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_518884 MT920024
 2020-03-22 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1491/2020
 C8782T G8792T A17858G C18060T A24694T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_521887 MT969352
 2020-03-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1845/2020
 ATTAAAGGTTT1- C3096T G11083T G13627T C14805T C15540T G26144T A27675C A28338G G29212T

EPI_ISL_525628
 2020-03-22 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-27593-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T G17242A A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527010
 2020-03-22 2020-09-03
 Australia hCoV-19/Australia/NSW2254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8078T G10754A G11083T C14805T T17247C G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528315
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C9319T G11083T C14805T T17247C G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528316
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T14444C C15324T A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528317
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C25658T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528318
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C21110T A23403G C28531T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528319
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T658C C3037T C14408T A23403G A24862G C28629T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528320
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528323
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C3037T C14408T A23403G AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_528330
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15324T A23403G G28881T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528331
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C4893T C14408T A20268G C23380A A23403G G25483A C26509T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528332
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528352
 2020-03-22 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42203375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C13957T C14408T C15324T G15982T T18436C A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_530043
 2020-03-22 2020-09-10
 Spain hCoV-19/Spain/MD-LP114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530269
 2020-03-22 2020-09-11
 Australia hCoV-19/Australia/QLD1009/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_530270
 2020-03-22 2020-09-11
 Australia hCoV-19/Australia/QLD1010/2020/P1
 AT1-S G2528A C6312A G11083T C13730T T14067C C23929T C28311T

EPI_ISL_530271
 2020-03-22 2020-09-11
 Australia hCoV-19/Australia/QLD1011/2020/P1
 AT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_534878
 2020-03-22 2020-09-14
 United Kingdom hCoV-19/England/OXON-B36A0/2020
 ATG1605- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_534898
 2020-03-22 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3A4A/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_535921
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00230482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10360A C14408T C20404T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535944
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T A29052T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535946
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2219G C3037T C14408T C23185T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535947
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535948
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535949
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535952
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231296/2020
 ATTA1- C241T C1059T C1387T C3037T C4993T C14408T A20755C A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535954
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231415/2020
 ATTAAA1- C241T C3037T C13517T C14408T A23403G C25350T C27673Y TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535955
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231416/2020
 ATTAAA1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535956
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535957
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231569/2020
 ATTAAA1- G4657A G11083T C14805T T17247C G26144T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535962
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28603T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535966
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C593T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535967
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00231966/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G C25433T T27444C C27847T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535971
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232064/2020
 ATTAAA1- G5138T G11083T C14805T T17247C G26144T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535972
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535973
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535974
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232080/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G C25433T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_535975
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232097/2020
 ATTAAA1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_535976
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232098/2020
 ATTAAA1- C241T C313T C3037T T13069G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_535978
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232107/2020
 AT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535979
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T T13069G C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535981
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232187/2020
 ATTA1- C241T C3037T C14408T C15324T A23403G A27675C A28765R CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_535982
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232239/2020
 ATTAAA1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_535983
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G7960T C8782T C17010T C17747T A17858G C18060T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_535984
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C635Y C3037T A6248C C14408T A20268G A23403G C25413T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_535985
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A20268G A23403G C28854T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_535986
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232439/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535987
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1627Y C3037T C14408T A20268G A23403G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535988
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232511/2020
 ATTA1- C241T C3037T C8208T G9267A T9667C C10725T C14408T A23403G G25947T G28361A GGG28881AAC G29745T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_535990
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C15324T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_535992
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232614/2020
 ATTAAAG1- C241T C3037T C5184Y G6358K C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_535994
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232723/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC C29555Y TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535995
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232726/2020
 ATTAAA1- C3037Y G3113C G11083T C14805T T17247C G26144T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_535998
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C13620T C14408T C21772Y A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536002
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536003
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232949/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_536005
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C23191T A23403G C27046T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536006
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233003/2020
 ATTAAAGG1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_536008
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536009
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233115/2020
 ATTAAA1- C241T GTCATGTTA510- C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536010
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233169/2020
 ATTAAAGGTTTATACCTTCCCA1- C7321T C8782T C17747T A17858G C18060T A24694T T27968Y T28144C G28167R AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536011
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233171/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T C27964T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536014
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T G8828A C12241Y C14408T G19009T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536015
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233316/2020
 ATTAAAGG1- A2480G C2558T G11083T C14805T G26144T G29742T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536046
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233970/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C18877T G20083T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536113
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536114
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536230
 2020-03-22 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239009/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15324T C16193T A22404T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536561
 2020-03-22 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-168/2020
 A1- C4540T C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_537435
 2020-03-22 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T GAGTACGATCGAGT29745- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537436
 2020-03-22 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537440
 2020-03-22 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T C25734M AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537809
 2020-03-22 2020-09-16
 Spain hCoV-19/Spain/CB-CSIC-98002760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C679A C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537810
 2020-03-22 2020-09-16
 Spain hCoV-19/Spain/CB-CSIC-98002761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C6310T C10186Y C14408T G16078A C16887Y A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538451
 2020-03-22 2020-09-17
 Singapore hCoV-19/Singapore/920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538822
 2020-03-22 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA0F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C20270T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538965
 2020-03-22 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539087
 2020-03-22 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A86CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- AAGTCATTT686- C1190T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539284
 2020-03-22 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C25452T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539285
 2020-03-22 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C4542M C13458Y C14408T G19150K A23403G GGG28881AAC C29585T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539527
 2020-03-22 2020-09-18
 Spain hCoV-19/Spain/CM-ISCIII-202018234/2020
 C241T C3037T C14408T A20268G A23403G C26894T A29714G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_539528
 2020-03-22 2020-09-18
 Spain hCoV-19/Spain/CM-ISCIII-202018271/2020
 C241T C3037T C14408T A20268G T22440C A23403G G29734C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_539529
 2020-03-22 2020-09-18
 Spain hCoV-19/Spain/CM-ISCIII-202018315/2020
 T42A C241T C3037T T3577C C3583T T3668A C14408T T19538A A20268G T21195C A23403G G29734C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_539573
 2020-03-22 2020-09-19
 Gabon hCoV-19/Gabon/ITM-K011/2020
 C8782T G13148A G22468T T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_542187
 2020-03-22 2020-09-23
 Italy hCoV-19/Italy/LOM-UniMI-L197/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G C26681T GGG28881AAC AACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29767-

EPI_ISL_547449
 2020-03-22 2020-09-24
 Netherlands hCoV-19/Aruba/AW-RIVM-10122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C9170T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548977
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/969/2020
 ATTAAAGGTTTATAC1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_548980
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/972/2020
 ATTA1- C6312A G11083T C13730T C18167T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_548985
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/977/2020
 C241T C3037T C14408T A20268G A23403G C26895Y AAAAAAAAAAAA29892-

EPI_ISL_548988
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/980/2020
 ATTA1- C3990Y A5390G G6694A T10204C G12322R C14119T A27195G AAAAAAAAAAAA29892-

EPI_ISL_548990
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/982/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC C28896Y AAAAAAAAAAAA29892-

EPI_ISL_548991
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/983/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T T6394C C10319T C14408T A16560R A23403G G25563T C27964T AAAAAAAAAAAA29892-

EPI_ISL_548992
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/984/2020
 ATTA1- C241T C3037T T8604Y C12823T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_548995
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/987/2020
 ATT1- T49W C241T C3037T C8595Y C14408T G20679T A23403G AAAAAAAAAAAA29892-

EPI_ISL_548999
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/991/2020
 ATTAAAGGTTTATACC1- A158R C241T C1707T C3037T C14408T A23403G G25429T C25916T AAAAAAAAAAAA29892-

EPI_ISL_549002
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_549003
 2020-03-22 2020-09-28
 Singapore hCoV-19/Singapore/995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C12513T C14408T C19170T G19509A A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_560413
 2020-03-22 2020-09-29
 Canada hCoV-19/Canada/QC-LSPQ-L00232672/2020
 ATTAAAGGTTTATAC1- C241T C3037T T12190C C14408T C18877T A23403G G25563T TT27464- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_560625
 2020-03-22 2020-09-29
 France hCoV-19/France/GE8783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G15894T G16741T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560697
 2020-03-22 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T C3037T C14408T A22481T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560700
 2020-03-22 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560701
 2020-03-22 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560705
 2020-03-22 2020-09-29
 United Kingdom hCoV-19/England/GSTT-5705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561335
 2020-03-22 2020-09-30
 United States hCoV-19/USA/DE-DHSS-F917656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C2416T C3037T C14408T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563979
 2020-03-22 2020-09-30
 Australia hCoV-19/Australia/VIC2072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3096T G11083T G13627T C14805T C15540T G26144T A27675M A28338G G29212T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_569337
 2020-03-22 2020-10-02
 France hCoV-19/France/IHU-0151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T G11083T C14408T C16394T C22458T A23403G G25563T C28651T C29363T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT380732
 2020-03-22 2020-04-24
 United States SARS-CoV-2/human/USA/DC-CDC-9092/2020
 C241T C1059T C3037T C14408T A23403G G25563T G27147T AAAAAAAAAAAAAAAAAAAAA29883-

MT459845
 2020-03-22 2020-05-11
 Greece SARS-CoV-2/human/GRC/48_35910/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C9430T T9477A C14805T A22151G G25979T T28144C C28657T C28863T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT509461
 2020-03-22 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509467
 2020-03-22 2020-05-22
 United States SARS-CoV-2/human/USA/DC-HP00022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706158
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706160
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T G20326A T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706166
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706167
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706186
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G A27338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706197
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706309
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706310
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706311
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C28310A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706312
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G G29315T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706313
 2020-03-22 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810920
 2020-03-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0182-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810933
 2020-03-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0201-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810957
 2020-03-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0250-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2018G C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810971
 2020-03-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0312-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A21137G A23403G A26530G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MW030228
 2020-03-22 2020-09-22
 Peru SARS-CoV-2/human/PER/covper092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28657T C28863T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013209
 2020-03-22 2020-06-01
 China hCoV-19/Guangzhou/ID017/2020
 C241T C3037T C14408T A23403G A24913G C28093T GGG28881AAC G29868M

NMDC60013213
 2020-03-22 2020-06-01
 China hCoV-19/Guangzhou/ID055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

NMDC60013222
 2020-03-22 2020-06-01
 China hCoV-19/Guangzhou/ID072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1314A C2416T C3037T C5654T C14408T G16846T A19314R A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

NMDC60013224
 2020-03-22 2020-06-01
 China hCoV-19/Guangzhou/ID021/2020
 T2C C241T C2416T C3037T C5654T C14408T G16846T A23403G G25563T G29868C

NMDC60013229
 2020-03-22 2020-06-01
 China hCoV-19/Guangzhou/ID016/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C2416T C3037T T12436A C14408T G14773C A23403G G25563T G29868A

EPI_ISL_417420
 2020-03-23 2020-03-25
 China hCoV-19/Chian/NanChang/JX216/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C11916T C14408T C18998T G19525A G29540A AAAAAAAAAAAA29892-

EPI_ISL_418186
 2020-03-23 2020-03-28
 United States hCoV-19/USA/WI-GMF-00227/2020
 T7084C C8782T C15738T C17747T A17858G C18060T T28144C

EPI_ISL_418187
 2020-03-23 2020-03-28
 United States hCoV-19/USA/WI-GMF-00228/2020
 T7084C C8782T C15546Y C15738T C17747T A17858G C18060T T28144C

EPI_ISL_418188
 2020-03-23 2020-03-28
 United States hCoV-19/USA/WI-GMF-00232/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25785T C28369T

EPI_ISL_418317
 2020-03-23 2020-03-23
 United Kingdom hCoV-19/England/SHEF-BFFA9/2020
 C241T C3037T A5855G C14408T A23403G GGG28881AAC

EPI_ISL_419254 MT527184
 2020-03-23 2020-04-01
 Italy SARS-CoV-2/human/ITA/INMI6/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_419255 MT528235
 2020-03-23 2020-04-01
 Italy SARS-CoV-2/human/ITA/INMI7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- A187G C241T C3037T C14408T T21293Y C21575T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_419664
 2020-03-23 2020-04-03
 Austria hCoV-19/Austria/CeMM0011/2020
 C241T C3037T C5884Y C14408T A20268G A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_419834 MT451042
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC138/2020
 ATTA1- C8782T C26088T T28144C

EPI_ISL_419982
 2020-03-23 2020-04-03
 Australia hCoV-19/Australia/VIC291/2020
 ATTA1- C241T G558K G660K C1059T G3004K C3037T G3564T C5869T G5880K G7038K G8790K G9141K G11535K G12164K C12415T G13571K G14277K C14408T G15769K C16222T G17096K A23403G G24933K G25563T G28086K

EPI_ISL_419983 MT451184
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC292/2020
 ATTA1- C241T C1059T C2523T C3037T C14408T A23403G G25563T

EPI_ISL_419984 MT451185
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC293/2020
 ATTAA1- C8782T G10368A A15205G C17569T C26088T T28144C A28885G

EPI_ISL_419985 MT451186
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC294/2020
 ATTAA1- C1076T G1397A G11083T C27964T T28688C G29742T

EPI_ISL_419986 MT451187
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC295/2020
 AT1- C4540T C8782T T9477A G12274T C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_419987 MT451188
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G18589T A23403G C25528T GGG28881AAC

EPI_ISL_419988 MT451189
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC297/2020
 ATTA1- C241T C1912T C3037T C3373A G3564K C11195T C14408T A23403G G24933K C28866T GGG28881AAC

EPI_ISL_419989 MT451190
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2523T C3037T C14408T A23403G G25563T

EPI_ISL_419990 MT451191
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC299/2020
 AT1- C186A C2558T G11083T C14805T G26144T

EPI_ISL_419991 MT451192
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3784T C14408T A20268G A23403G C28651T

EPI_ISL_419992 MT451193
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C2558T G11083T C14805T G26144T

EPI_ISL_419993 MT451194
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC302/2020
 ATTA1- C241T C3037T C14408T C15324T G22918T A23403G G28690T

EPI_ISL_419994 MT451195
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G18318T A23403G G25429T C25916T

EPI_ISL_419995 MT451196
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC304/2020
 ATTA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_419996 MT451197
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC305/2020
 ATTAAAGGTTTA1- C140Y C3096T G11083T G13627T C14805T C15540T G26144T A28338G G29212T

EPI_ISL_419997 MT451198
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC306/2020
 C241T C1059T C2523T C3037T G3564K C14408T A23403G G24933K G25563T G28517K

EPI_ISL_419998 MT451199
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC307/2020
 ATT1- C241T C2416T C3037T G3564K G12274A C14408T C14786T G20578T A23403G G25563T C26681T

EPI_ISL_419999 MT451200
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC308/2020
 AT1- C241T C1059T C2523T C3037T C14408T G16206T A23403G G25563T G26398A

EPI_ISL_420000 MT451201
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC309/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420001 MT451202
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC310/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G GGG28881AAC A29865R

EPI_ISL_420002 MT451203
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC311/2020
 ATTAAAG1- G8C C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420003 MT451204
 2020-03-23 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C15324T G22918T A23403G C23557T G28690T

EPI_ISL_420061
 2020-03-23 2020-04-04
 France hCoV-19/France/IDF3212/2020
 C241T C3037T C11414T C14408T A23403G G28001T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_420064
 2020-03-23 2020-04-04
 France hCoV-19/France/IDF3235/2020
 C241T C560T C3037T C14408T C15324T A23403G C28253T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_420235
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C053A/2020
 C1457T A2480G C2558T G11083T C14805T G26144T C26340T

EPI_ISL_420236
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0664/2020
 C241T A2869G C3037T C14408T A23403G GGG28881AAC C29095T

EPI_ISL_420237
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0628/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_420239
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0770/2020
 ATG1605- A1904G C8090T C10789T A12796C

EPI_ISL_420240
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0084/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420264
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C06FB/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420265
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C078F/2020
 C241T C1469T C3037T C14408T A23403G G24095T GGG28881AAC

EPI_ISL_420267
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C00DF/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420268
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0093/2020
 T7438C G26840T GGG28881AAC

EPI_ISL_420269
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C04F1/2020
 C1457T A2480G C2558T G11083T C14805T G26144T C26340T

EPI_ISL_420371
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/VRJM-0323114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420372
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/LPDC-0323115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18904T C21742T A23403G G25606T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420373
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/EBN-0323116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15026T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420386
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/MC-0323129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420396
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/GM-0323139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420397
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/DB-0323140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420398
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/NA-0323141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8394T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420411
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/BEG-0323154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4011C G4261A C14408T C21110T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420416
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/FMC-0323159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4011C G4261A C14408T C21110T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420432
 2020-03-23 2020-04-06
 Belgium hCoV-19/Belgium/CJM-0323175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11355T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420508
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/20132072802/2020
 C241T C3037T C14408T C18877T A23403G C24155Y G25563T C29625T

EPI_ISL_420568
 2020-03-23 2020-04-06
 Italy hCoV-19/Italy/6193/2020
 A39G T42C C44A C48M C241T C1023Y C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420569
 2020-03-23 2020-04-06
 Italy hCoV-19/Italy/TE6195/2020
 TTT28881CAG C15T A35R A39W C48M C241T AC538WM C3037T C14408T A17346M A23403G GGG28881AAC

EPI_ISL_420583
 2020-03-23 2020-04-06
 Italy hCoV-19/Italy/TE6222/2020
 TTC42KYM C48A A55R C241T A538W C3037T T7396W TG8827WK C14408T A23403G T24084W A25449W GGG28881AAC A29903-

EPI_ISL_420604
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12371/2020
 C241T GTCATGTTA510- C3037T G6052A C14408T A22234G A23403G G25563T C29732T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420607
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12485/2020
 C241T C3037T T10561C C14408T C15324T C16887T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420608
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12499/2020
 C241T C3037T C14408T A23403G G25563T G28086T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420609
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12524/2020
 C241T G248T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420610
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12558/2020
 C241T A2522G C3037T A10874G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420611
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12576/2020
 G167T C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420613
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12630/2020
 C241T C1059T C3037T C14408T A23403G G23611A G25563T G28109T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420614
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12632/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28423A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_420615
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12759/2020
 C241T C3037T C14408T A23403G G25340A G25563T C26013T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420616
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA1284/2020
 C241T C3037T C7093T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_420617
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12877/2020
 C241T C337T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420618
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12915/2020
 C241T C3037T C6310T C14408T C15324T C16762T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420619
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12973/2020
 C241T C3037T G6532T C14408T C15324T A15860G A23403G G28985T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420620
 2020-03-23 2020-04-06
 France hCoV-19/France/ARA12996/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420630 MT322417
 2020-03-23 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0038/2020
 AT1- C241T C1059T C3037T C14408T C14925T A23403G G25563T

EPI_ISL_420640
 2020-03-23 2020-04-06
 United Kingdom hCoV-19/England/20136088602/2020
 T931C ATG1605- T12418C G20024A G26416C G29425A

EPI_ISL_420985
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-252B4/2020
 C241T C3037T C14408T A23403G T26512C

EPI_ISL_420988
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-253DF/2020
 A1- G1440A G2891A C25669T G28851T A29865R

EPI_ISL_420990
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25418/2020
 A1- A2480G C2558T G11083T C14805T G26144T C28876T G29742A

EPI_ISL_420994
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25463/2020
 G1440A G2891A G28851T

EPI_ISL_420995
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A C4993Y C21575T C25669T C28786T G28851T

EPI_ISL_421002
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25524/2020
 ATTA1- G1440A G2891A C5467T C27046Y G28851T

EPI_ISL_421003
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25542/2020
 C241T C3037T C4002T G10097A C11620T C13536T C14408T G21538T A23403G C23731T GGG28881AAC C29774T

EPI_ISL_421004
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-25551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T5573C G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC A29865G

EPI_ISL_421006
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-2557F/2020
 A1- G1440A G2891A G4720T C16329T A27669G

EPI_ISL_421008
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-255AC/2020
 C241T C3037T C6990T C14408T A23403G C29200T

EPI_ISL_421010
 2020-03-23 2020-04-07
 United Kingdom hCoV-19/Wales/PHWC-255E8/2020
 ATTA1- G1440A G2891A C25669T G28851T

EPI_ISL_421196
 2020-03-23 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10018/2020
 C241T C313T C3037T C14408T C19343T G20275T A23403G GGG28881AAC

EPI_ISL_421283
 2020-03-23 2020-04-07
 United States hCoV-19/USA/WI-UW-25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T C25046T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421291
 2020-03-23 2020-04-07
 United States hCoV-19/USA/WI-UW-33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421313
 2020-03-23 2020-04-07
 United States hCoV-19/USA/WI-UW-55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8818T A10995G G29711T T29804C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421316
 2020-03-23 2020-04-07
 United States hCoV-19/USA/WI-UW-58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421319
 2020-03-23 2020-04-07
 United States hCoV-19/USA/WI-UW-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421338
 2020-03-23 2020-04-07
 United States hCoV-19/USA/WI-UW-79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3429T C14408T A20268G A21137G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421495
 2020-03-23 2020-04-08
 Portugal hCoV-19/Portugal/PT0092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C11663T C14408T A20268G A23403G G29734C CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_421507
 2020-03-23 2020-04-08
 France hCoV-19/France/IDF3274/2020
 ATTAAAG1- C36T C241T C1059T C3037T C3177T C11471T C14408T A23403G G23856T G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_421508
 2020-03-23 2020-04-08
 France hCoV-19/France/IDF3276/2020
 C36T C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_421509
 2020-03-23 2020-04-08
 France hCoV-19/France/HF3290/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C23029T A23403G G25563T A26459G T26483C C29724T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_421511
 2020-03-23 2020-04-08
 France hCoV-19/France/HF3295/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T G9141A C14408T A20766G A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_421512
 2020-03-23 2020-04-08
 France hCoV-19/France/IDF3324/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15324T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_421513
 2020-03-23 2020-04-08
 France hCoV-19/France/IDF3345/2020
 ATTAAAGGTTTAT1- C241T C3037T T10339C C14408T A23403G G25563T C26461T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_421826
 2020-03-23 2020-04-09
 United Kingdom hCoV-19/England/201380276/2020
 G1440A C1887Y G2891R G6463T A17787W G25784T C27577T A27669G

EPI_ISL_421842
 2020-03-23 2020-04-09
 United Kingdom hCoV-19/England/20138086904/2020
 A2480G C2558T G11083T C14805T T25519A T25957C G26144T C29200Y

EPI_ISL_422714 LR877790
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422715 LR877788
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C2609T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422718 LR877796
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26408T C27804T A27897G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422720 LR877798
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422721 LR877805
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422722 LR877809
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422724 LR877813
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6120T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422725 LR877820
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G11083T C14805T T17247C C20233T G26144T A29598G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422726 LR877815
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G15535T T17247C C23413T G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422729 LR877814
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C19854T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422923 LR877794
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422924 LR877792
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422925 LR877802
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A18801C A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422926 LR877795
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24054T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422929 LR877806
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422930 LR877804
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C15720T A23403G C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422932 LR877803
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1077T C3037T C14408T C18029T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422934 LR877812
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26754T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422935 LR877816
 2020-03-23 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423075
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134007204/2020
 A7479G A8667G G11083T C14805T T17247C T22389Y C25572T G26144T C28887T

EPI_ISL_423096
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134017904/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423097
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134018004/2020
 C241T G2164A C3037T G13571K C14408T A23403G GGG28881AAC

EPI_ISL_423099
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134018602/2020
 C241T A1422R C3037T C14408T A23403G A26530R C26789T

EPI_ISL_423104
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134019402/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G28908T

EPI_ISL_423105
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134019502/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_423109
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134020104/2020
 A2480G C2558T -11075TTT G11083T C14805T G26144T

EPI_ISL_423129
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134025204/2020
 C241T A1977R C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423136
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134027504/2020
 A2480G C2558T G11083T C14805T G18078A G22661T G26144T

EPI_ISL_423147
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134060504/2020
 C241T C2416T C3037T C14408T C14786T T17097C G20578T A23403G T25485C G25563T

EPI_ISL_423150
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134064004/2020
 C241T C3037T C14408T G19684T A23403G GGG28881AAC

EPI_ISL_423163
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20134071804/2020
 C241T C1059T C3037T T13006C C14408T A23403G C24919Y G25563T C25688T

EPI_ISL_423648
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20130063804/2020
 A2480G C2558T G11083T C14805T A20216W G26144T

EPI_ISL_423717
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132004804/2020
 C241T C3037T CC14407TT A23403G A26530R

EPI_ISL_423727
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132017604/2020
 A2480G C2558T G11083T C14805T C20703T G26144T

EPI_ISL_423733
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132018704/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_423761
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132026904/2020
 C241T C3037T C14408T G21204T A23403G GGG28881AAC

EPI_ISL_423782
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132047304/2020
 C241T A1307R C3037T C5869T C14408T A23403G G23593K G25429T

EPI_ISL_423787
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132054704/2020
 G1440A G2891R A27669G

EPI_ISL_423796
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132068204/2020
 C241T C1059T C1437T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_423797
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132068304/2020
 C241T C1059T C1437T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_423799
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132069104/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_423808
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132080804/2020
 A2480G C2558T G11083T C14805T C18162T C24964T G26144T

EPI_ISL_423813
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132082004/2020
 T586C G1043R A1123G G2448T G11083T G13627T C14805T C15540T G26144T A28338G T29729W

EPI_ISL_423817
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132082504/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_423819
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132090504/2020
 G1440A G2891R C4668T A12976T C28657Y C28708T

EPI_ISL_423828
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132095704/2020
 A2480G C2558T C7011T G11083T G11405A C14805T G26144T C28869T

EPI_ISL_423829
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132096004/2020
 G1440A G2891R G5665A C20703T

EPI_ISL_423830
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132096304/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423834
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132100404/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423839
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132105704/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423844
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132107304/2020
 C241T G487A C3037T C14408T G21204T A23403G GGG28881AAC

EPI_ISL_423847
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132108004/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423852
 2020-03-23 2020-04-12
 United Kingdom hCoV-19/England/20132108704/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_424251 MT326087
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1801/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_424252 MT326088
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1840/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C10818T C14937T C17747T A17858G C18060T T28144C

EPI_ISL_424279 MT326034
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAA1- T1896C C8782T C11674T C17747T A17858G C18060T T28144C C28826T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_424280 MT326035
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- A1079C G1397A C4456T T7225C C9319T G11083T C19862T T27384C T28688C G29742T A29869T A29903-

EPI_ISL_424281 MT326036
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTC1- C241T C3037T C14408T C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_424284 MT326039
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACG1- C8782T G13571T C17747T A17858G C18060T A27924G T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424287 MT326042
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- G8602A C8782T C17747T A17858G C18060T C25418A G26152A T28144C AA29902-

EPI_ISL_424289 MT326044
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTG1- C8782T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_424291 MT326046
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C241T C1059T C3037T C6040T C14408T A23403G G25563T A29869T

EPI_ISL_424293 MT326048
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C6040T C14408T A23403G G25563T A29903-

EPI_ISL_424294 MT326049
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1872/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C64T C241T C379A C1059T T2244C C3037T C11704T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424296 MT326051
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1919/2020
 ATTAAAGGTTTATACCTTCCCA1- AACC34TTTH G8602A C8782T C17747T A17858G C18060T G21800T C25418A G26152A T28144C C29838T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_424297 MT326052
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1913/2020
 ATTAAAGGTT1- T13B ACC35TTH C8782T C10002T A10844G C17747T A17858G C18060T T28144C A29903-

EPI_ISL_424298 MT326053
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATA1- C2592T C8782T C17274T C17326T C17747T A17858G A17884G C18060T G19645T G19800A T28144C A29903-

EPI_ISL_424299 MT326054
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAA1- C241T C1059T C3037T G3947T C6040T C14184T C14408T A23403G G25563T C25844T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_424307 MT326061
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/OR-UW-1885/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- AACC34HTTH C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAA29896-

EPI_ISL_424310 MT326064
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAAC1- C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_424327
 2020-03-23 2020-04-12
 United States hCoV-19/USA/WA-UW-1947/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37H C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T -28087CTGGTTCTAAATCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGT AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424330 MT326082
 2020-03-23 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1865/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C6255T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_425058
 2020-03-23 2020-04-14
 Belgium hCoV-19/Belgium/UGent-18/2020
 T514C ATG1605- G14622T C17410T T18723C

EPI_ISL_425570
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E5F3/2020
 C241T C3037T C14408T A23403G

EPI_ISL_425571
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E61E/2020
 C241T C3037T C14408T A23403G G25429T C27972T C28045T

EPI_ISL_425573
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E64B/2020
 C241T C3037T C14408T T15351G G21518T A23403G

EPI_ISL_425775
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR462/2020
 A7990C G11083T C14805T T17247C G26144T

EPI_ISL_425786
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR562/2020
 ATG1605- C3787T C12025T C16362T

EPI_ISL_425902
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB118/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425907
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB125/2020
 C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_425911
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB132/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_425915
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB146/2020
 G227A C241T C3037T T3100G G10097A C14408T C14649T G15079A AT17199GA G17567A C17939T A23403G G23561A C23731T G24056A G25770A G25947T G26709A GGG28881AAC G29058A

EPI_ISL_425916
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB148/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_425922
 2020-03-23 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB157/2020
 A1691G A9744G G11083T C14805T T17247C G26144T

EPI_ISL_426060 MT345828
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-2160/2020
 ATTAAAGGTTT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAA29896-

EPI_ISL_426061 MT345858
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-2174/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T T833C C1059T C3037T C14408T C15928T A23403G G25563T C27964T -29904AAAAAAAAAA

EPI_ISL_426063 MT345866
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-2255/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA AC163CG GT167CA C241T T833C C1059T C3037T C14408T A23403G C23557T G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426078
 2020-03-23 2020-04-14
 United States hCoV-19/USA/UN-UW-2139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T T3312C C14408T A23403G G25563T AAAAAAA29897-

EPI_ISL_426081 MT345805
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2078/2020
 ATTAAAG1- AACC34TTTA C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAA29892-

EPI_ISL_426103 MT345799
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426119 MT345836
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2228/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G A29903-

EPI_ISL_426133 MT345867
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2258/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA T7513C C8782T C17747T A17858G C18060T T28144C A29903-

EPI_ISL_426304
 2020-03-23 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-27162-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426454 MT350236
 2020-03-23 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T G4523A C10712T C14408T C16111T A23403G G25563T C29870A

EPI_ISL_426526
 2020-03-23 2020-04-17
 United States hCoV-19/USA/AZ-TG269824/2020
 C241T C1059T C3037T C14408T C21767T A23403G G24928T G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426688 MT451268
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_426689 MT451269
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC382/2020
 ATTA1- C241T C1059T C3037T G3564T G4678A C14408T A23403G C24844T G24933K G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_426690 MT451270
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC383/2020
 AT1- C241T C1059T C3037T C11919T C14408T C21711T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_426691 MT451271
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC384/2020
 ATTAAAGGTT1- C241T C3037T C14408T G17944T A23403G A23922G T25051C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_426692 MT451272
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC385/2020
 AT1- C3365T G3564T G11083T C14805T C23707T G24933T G26144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_426694 MT451274
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC387/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_426696 MT451276
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G3564T G11083T C14805T T17247C G24933T G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_426765 MT451350
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC492/2020
 G3564T G11083T C14805T G24933T G26144T C26606T G28842T

EPI_ISL_426767 MT641676
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC494/2020
 G3564T C6312A G11083T C13730T C23929T G24933T C28311T

EPI_ISL_426770 MT641677
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC497/2020
 C241T C1059T C3037T G3564T G9968A G11535K C14408T A20755C A23403G G25563T C28093T

EPI_ISL_426771 MT451354
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC498/2020
 C241T C1059T C3037T G3564T C10851T C14408T A23403G G25563T

EPI_ISL_426775 MT451356
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC504/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_426786 MT641686
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC516/2020
 C241T C3037T G3564T G8790K G11535T C14408T A23403G G24933T C27046T GGG28881AAC

EPI_ISL_426789 MT451358
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC520/2020
 C241T C3037T G3564T T7438C C14408T A23403G G24933T C29353T

EPI_ISL_426796 MT451364
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC530/2020
 C241T C3037T C4809T C14408T A23403G A26530G

EPI_ISL_426798 MT451366
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC532/2020
 G374A C6936T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_426804 MT451370
 2020-03-23 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC538/2020
 C241T C1059T C2523T C3037T C14408T A23403G G25563T

EPI_ISL_427271
 2020-03-23 2020-04-17
 United States hCoV-19/USA/AZ-TG271866/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC -29594AT AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427272
 2020-03-23 2020-04-17
 United States hCoV-19/USA/AZ-TG271868/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC -29594AT AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427286
 2020-03-23 2020-04-17
 United States hCoV-19/USA/MN-MDH-147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9661T C14408T A21845R A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427287
 2020-03-23 2020-04-17
 United States hCoV-19/USA/MN-MDH-149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2969G C3037T C14408T T22325W A23403G G25563T G26389T T26545C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427296
 2020-03-23 2020-04-18
 Brazil hCoV-19/Brazil/DF-861/2020
 ATTAAAGG1- C241T C3037T C7504T C14408T A23403G T27299C GGG28881AAC T29148C CTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29784-

EPI_ISL_427297
 2020-03-23 2020-04-18
 Brazil hCoV-19/Brazil/DF-862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_427395
 2020-03-23 2020-04-18
 Taiwan hCoV-19/Taiwan/TSGH-08/2020
 C241T C1059T C3037T C6926T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_427396
 2020-03-23 2020-04-18
 Taiwan hCoV-19/Taiwan/TSGH-09/2020
 T2C G7A T9A G1440A G2534A G2891A C4668T

EPI_ISL_427416
 2020-03-23 2020-04-18
 Qatar hCoV-19/Qatar/QA20/2020
 C9303Y C11074Y G11083K C14805Y G16537R C24245Y G25555S G26144K

EPI_ISL_427417
 2020-03-23 2020-04-18
 Qatar hCoV-19/Qatar/QA21/2020
 T356Y G11083K C13667Y C14805Y G16537R C19484Y C21304Y G26144K

EPI_ISL_428282
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428283
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428285
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428286
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C21110T A23403G G25563T C27964T C28846T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428287
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A A10070C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428288
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428289
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428303
 2020-03-23 2020-04-20
 United States hCoV-19/USA/WI-UW-207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A G11083T G23518A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428349
 2020-03-23 2020-04-20
 France hCoV-19/France/IDF3386/2020
 C241T C2416T C3037T C12141A C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_428352
 2020-03-23 2020-04-20
 France hCoV-19/France/IDF3518/2020
 C241T C3037T C14408T C15324T A23403G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_428359
 2020-03-23 2020-04-20
 France hCoV-19/France/HF3677/2020
 C241T C3037T A6081G C14408T C15324T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_428367
 2020-03-23 2020-04-20
 France hCoV-19/France/N4427/2020
 C241T C2536T C3037T C9448T C14408T T15696G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_428892
 2020-03-23 2020-04-22
 Russia hCoV-19/Russia/Krasnodar-80902/2020
 C241T C1059T C3037T C10449T C14408T A20055G A23403G G25563T

EPI_ISL_428893
 2020-03-23 2020-04-22
 Russia hCoV-19/Russia/Kabardino-Balkaria-80501/2020
 C8782T G22468T T28144C G28878A G29742A

EPI_ISL_428898
 2020-03-23 2020-04-22
 Russia hCoV-19/Russia/Kabardino-Balkaria-80503/2020
 C8782T G22468T T28144C G28878A G29742A

EPI_ISL_428900
 2020-03-23 2020-04-22
 Russia hCoV-19/Russia/Moscow-80112/2020
 A187G C241T C3037T C14408T A23403G G29557T

EPI_ISL_428901
 2020-03-23 2020-04-22
 Russia hCoV-19/Russia/Crymea-80603/2020
 C241T C3037T G4201T C14408T A23403G C26527T

EPI_ISL_428902
 2020-03-23 2020-04-22
 Russia hCoV-19/Russia/Orenburg-80305/2020
 C241T C1059T C3037T C10449T C14408T A20055G A23403G G25563T

EPI_ISL_428905
 2020-03-23 2020-04-22
 Russia hCoV-19/Russia/Moscow-80402/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428994 MT385418
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0703/2020
 C241T C313T C3037T C14408T A23403G G28086T GGG28881AAC

EPI_ISL_429016 MT385440
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0709/2020
 ATTAAAGG1- C241T C1059T C3037T G8102T C14408T G14712A C14877T A23403G G25563T G28851T A29884C AAAAA29899-

EPI_ISL_429022 MT385446
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0713/2020
 C241T G1145A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429024 MT385448
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0705/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T C29614T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_429034 MT385458
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0706/2020
 ATTAAAGGTTTA1- T13Y T21895Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429038 MT385462
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0707/2020
 ATTAAAGGTTTATAC1- C241T C3037T C11674T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429040 MT385464
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0701/2020
 ATTAAAGGT1- C6723T C8782T C14925T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429042 MT385466
 2020-03-23 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0710/2020
 ATTAAAGGTTT1- C241T T833C C1059T C3037T C11008T C14408T A23403G C23557T G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429130
 2020-03-23 2020-04-23
 Sweden hCoV-19/Sweden/20-08683/2020
 C241T C1059T C1302T C3037T C14408T A23403G C25282T G25563T

EPI_ISL_429214
 2020-03-23 2020-04-23
 Switzerland hCoV-19/Switzerland/GE2759/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15324T A23403G G28881T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_429215
 2020-03-23 2020-04-23
 Switzerland hCoV-19/Switzerland/GE4807/2020
 ATTAAAGG1- C241T A518G C3037T C8293T C14408T T18488C A23403G T24739C A26530G A29903-

EPI_ISL_429460
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI346/2020
 C241T C1059T C3037T C12885T C14408T A23403G G25563T

EPI_ISL_429461
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI347/2020
 C241T C1059T C3037T C4202T T8788C G13624T C14408T A23403G G25563T G26951A

EPI_ISL_429463
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI349/2020
 C241T C1059T C1302T C3037T C11074T C14408T T18731C A23403G G25563T

EPI_ISL_429464
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI351/2020
 C241T C1059T C3037T C3966T C14408T A23403G G25563T T29655C

EPI_ISL_429465
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI352/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429466
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI354/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429468
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI357/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429471
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI361/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_429472
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI364/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429473
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI365/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_429474
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI366/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429476
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI370/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429477
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI371/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429478
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI372/2020
 C241T C1059T C3037T T8788C C14408T C21575T A23403G G25563T G26951A

EPI_ISL_429490
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI395/2020
 C241T C3037T C7834T C14408T G16117T A23403G

EPI_ISL_429492
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI399/2020
 C241T C1059T C1302T G2632T C3037T C14408T A23403G G25563T

EPI_ISL_429493
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI400/2020
 C241T C1059T C1302T C3037T C14408T G22299T A23403G G25563T

EPI_ISL_429496
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI403A/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429506
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI411A/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429508
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI412A/2020
 C241T C1059T C3037T T8788C C14408T C19512T C23114T A23403G G25563T G26951A

EPI_ISL_429510
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI413A/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29200T

EPI_ISL_429512
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI414A/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29200T

EPI_ISL_429563
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI484/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429566
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI489/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A C27799T

EPI_ISL_429573
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI502/2020
 C241T C1059T C3037T C13366T C14408T C21772T A23403G G25563T

EPI_ISL_429583
 2020-03-23 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI515/2020
 G1440A G2891A C4668T G11083T A15553G

EPI_ISL_429766
 2020-03-23 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS0814393/2020
 C241T A618G C3037T T12828C C14408T C15324T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_429776
 2020-03-23 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS8726389/2020
 C241T C3037T C14408T C15324T A23403G C25433T C26527T C29546T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_429871
 2020-03-23 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-10241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_429873
 2020-03-23 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-11520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1437T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429883
 2020-03-23 2020-04-24
 Taiwan hCoV-19/Taiwan/108/2020
 A1- A4G C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_429996 MT811548
 2020-03-23 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0036-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C25904T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430006 MT811557
 2020-03-23 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0048-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C7169T C14408T A23403G G25563T C25904T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430143 MT632630
 2020-03-23 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S289/2020
 C241T C1059T G2198A C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_430228 MT632544
 2020-03-23 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S190/2020
 C8782T T12530C C17747T A17858G C18060T G21255C T28144C

EPI_ISL_430246 MT632522
 2020-03-23 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S208/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430247 MT632532
 2020-03-23 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S209/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_430256 MT632510
 2020-03-23 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S218/2020
 C241T C379A C1059T T2244C C3037T C3177T C14408T A23403G G25563T

EPI_ISL_430792
 2020-03-23 2020-04-27
 United States hCoV-19/USA/CA-CZB0716/2020
 ATTAA1- AAAATT6518- T23590C TT26159- G28178T G29711T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_432179
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-25384/2020
 A1- C241T C3037T G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_432188
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-25357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C25350T

EPI_ISL_432190
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-25393/2020
 ATTA1- G1440A G2891A C25669Y G28851T

EPI_ISL_432207
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2530C/2020
 C241T G1264A C3037T G7936R C14408T A23403G

EPI_ISL_432220
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-25375/2020
 A1- C241T G680K C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432864
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C83ED/2020
 C241T C3037T C11941T C14408T C15324T A23403G

EPI_ISL_433288
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR392/2020
 G1274T ATG1605- C5826T C12710T C28854T

EPI_ISL_433289
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A11991G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433298
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17470T C26088T T28144C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433302
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR473/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_433303
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR487/2020
 ATG1605- C12710T A17460G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433304
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR491/2020
 C241T C3037T C5812T C14408T A23403G GGG28881AAC

EPI_ISL_433433
 2020-03-23 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB129/2020
 C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_434267 MT632864
 2020-03-23 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S507/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26408T G29553A

EPI_ISL_434297 MT632913
 2020-03-23 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S537/2020
 C6312A T6880C G11083T C13730T C23929T C28311T

EPI_ISL_434299 MT632881
 2020-03-23 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S539/2020
 C5170T C8782T C16468T T17673C C17747T A17858G C18060T T28144C

EPI_ISL_434302 MT632947
 2020-03-23 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S542/2020
 C8782T G11083T C17747T A17858G C18060T T28144C

EPI_ISL_434306 MT633004
 2020-03-23 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S546/2020
 C8782T G11083T C17747T A17858G C18060T T28144C

EPI_ISL_434312 MT632906
 2020-03-23 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S552/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_434460
 2020-03-23 2020-04-29
 Greece hCoV-19/Greece/38/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G5230T C14408T A20268G A23403G G28975T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434462
 2020-03-23 2020-04-29
 Greece hCoV-19/Greece/47/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T G18907T C20402T G26144T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434463
 2020-03-23 2020-04-29
 Greece hCoV-19/Greece/46/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434465
 2020-03-23 2020-04-29
 Greece hCoV-19/Greece/44/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434541 MT419810
 2020-03-23 2020-04-29
 United States SARS-CoV2/human/USA/PR-CDC-S1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C8782T C17747T A17858G C18060T C18115T A24694T T28144C A29863G AAAA29900-

EPI_ISL_434543 MT419812
 2020-03-23 2020-04-29
 United States SARS-CoV2/human/USA/PR-CDC-S3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_434545 MT419814
 2020-03-23 2020-04-29
 United States SARS-CoV2/human/USA/PR-CDC-S5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C1059T C3037T G7936T C14408T A23403G G25563T AAAA29900-

EPI_ISL_434549 MT419818
 2020-03-23 2020-04-29
 United States SARS-CoV2/human/USA/PR-CDC-S9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A22278G A23403G G25563T G29540A AAAA29900-

EPI_ISL_434651
 2020-03-23 2020-04-30
 Sweden hCoV-19/Sweden/20-06306/2020
 C241T C3037T C14408T A23403G C26447T GGG28881AAC

EPI_ISL_434854
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH155/2020
 T490A C3177T C8782T T18736C T23677C C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_434855
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH156/2020
 T490A C3177T C6040T C7764T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434856
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH157/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434857
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH158/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434858
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH159/2020
 C241T C3037T C14408T G15243T A23403G

EPI_ISL_434859
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH160/2020
 C241T C3037T A6616G C14408T G15243T A23403G

EPI_ISL_434860
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH182/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_434863
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH185/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_434864
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH186/2020
 C241T C3037T C6706T A13868G C14408T C18877T C21767T A23403G G25563T

EPI_ISL_434865
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH189/2020
 C241T C1684T C3037T G4631A C14408T G18898T A23403G A25315G GGG28881AAC

EPI_ISL_434867
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH192/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434868
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH193/2020
 C241T C3037T C14408T G15243T A23403G

EPI_ISL_434870
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH195/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434871
 2020-03-23 2020-05-01
 United States hCoV-19/USA/TX-HMH196/2020
 C241T C3037T G11083T C14408T C18877T A23403G G25563T

EPI_ISL_435420
 2020-03-23 2020-05-04
 Hungary hCoV-19/Hungary/MBL-002/2020
 C241T C3037T C14408T A20268G A23403G G25483A

EPI_ISL_436044
 2020-03-23 2020-05-05
 United States hCoV-19/USA/LA-CDC-1894/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T G29543T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436098
 2020-03-23 2020-05-06
 Australia hCoV-19/Australia/QLDID936/2020
 A1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_436316
 2020-03-23 2020-05-06
 Spain hCoV-19/Spain/Valencia221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436466
 2020-03-23 2020-05-06
 United States hCoV-19/USA/PA-MGSC11-04/2020
 C241T C3037T C13019T C14408T A20268G A23403G C29585T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436476
 2020-03-23 2020-05-06
 United States hCoV-19/USA/PA-MGSC23-05/2020
 C241T C1059T C1387T C3037T C14408T A20755C T22114C A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436502
 2020-03-23 2020-05-06
 United States hCoV-19/USA/PA-MGSC55-05/2020
 C241T C1059T C3037T C14408T C15240T A23403G G25563T C28807T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436838 MT439261
 2020-03-23 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20117/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C10525T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436841 MT439262
 2020-03-23 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436842 MT439280
 2020-03-23 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20152/2020
 ATTAAAGGTTTATACC1- C241T C703T C1059T C3037T C14408T A23403G G25563T G26713T C27679Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436843 MT439270
 2020-03-23 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C25976A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436978
 2020-03-23 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-579/2020
 C241T C3037T C13862T C14408T A23403G C28836T G28954A

EPI_ISL_437015
 2020-03-23 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-643/2020
 C241T C1059T C3037T C11074T C14408T A23403G G25563T

EPI_ISL_437089
 2020-03-23 2020-05-08
 Latvia hCoV-19/Latvia/010/2020
 C241T C3037T C9344T C14408T A23403G

EPI_ISL_437091
 2020-03-23 2020-05-08
 Latvia hCoV-19/Latvia/012/2020
 C241T C3037T T9727C C14408T C19488T A23403G GGG28881AAC

EPI_ISL_437094
 2020-03-23 2020-05-08
 Latvia hCoV-19/Latvia/015/2020
 C241T C3037T TG13575CT C14408T A23403G GGG28881AAC

EPI_ISL_437095
 2020-03-23 2020-05-08
 Latvia hCoV-19/Latvia/016/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437096
 2020-03-23 2020-05-08
 Latvia hCoV-19/Latvia/017/2020
 C241T C1968T C3037T C14408T A23403G C27769T GGG28881AAC

EPI_ISL_437237
 2020-03-23 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0038/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437459
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah03/2020
 ATTAAAGGTTT1- C8782T G14122T G22468T T28144C G28878A G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437460
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah04/2020
 ATTAAAGGTTTATACC1- C8782T G14122T G22468T T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437461
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah05/2020
 ATTAAAGGTT1- C8782T G14122T G22468T G25494T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437462
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah06/2020
 ATTAAAGGTTTATACC1- C8782T G14122T G22468T C24904T T28144C G28878A G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437463
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah09/2020
 ATTAAAGGTTTATACCTTCC1- C241T C2113T C3037T C7765T C14408T C18877T G20548T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_437464
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah10/2020
 ATTAAAGGTTTATACCTT1- C84T C241T C3037T C14408T C18877T A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437465
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah12/2020
 ATTAAAGGTTTATAC1- G5580T A6708T C8782T G9242T C12115T T12184C G19627A G22468T G24434T T28144C G28878A G29742A A29887C A29892C A29894G -29901T

EPI_ISL_437466
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah13/2020
 ATTA1- C8782T G14122T C14408T G22468T T28144C G28878A G29742A A29884C A29889C A29891G A29898T AA29902-

EPI_ISL_437467
 2020-03-23 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah18/2020
 ATTAAAGGTTTATAC1- C8782T G9242T C13119T G13286T G15190T G18017T G18020T C20429T G22468T G24434T T28144C G28878A G29742A A29884C A29889C A29891G A29898T AA29902-

EPI_ISL_437513
 2020-03-23 2020-05-11
 United States hCoV-19/USA/AK-PHL034/2020
 ATTAAAG1- C241T C1059T C3037T C14408T G15760A A23403G G25563T G26062T

EPI_ISL_437514
 2020-03-23 2020-05-11
 United States hCoV-19/USA/AK-PHL041/2020
 ATTAAAGGTTTATA1- C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_437588
 2020-03-23 2020-05-11
 United States hCoV-19/USA/CA-SR0193/2020
 C241T C1059T C1887T C3037T C14408T A17615G A23403G G25563T C29870A

EPI_ISL_437594
 2020-03-23 2020-05-11
 United States hCoV-19/USA/CA-SR0184/2020
 C241T C1059T C3037T C14408T A23403G C24064T G25563T

EPI_ISL_437897 MT459903
 2020-03-23 2020-05-11
 Greece SARS-CoV-2/human/GRC/40_36244/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G A26114T GGG28881AAC C29364G C29754T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437899 MT459905
 2020-03-23 2020-05-11
 Greece SARS-CoV-2/human/GRC/42_36236/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A187G C241T C3037T C14408T A23403G C25916T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437955
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0094/2020
 C241T C1059T C3037T C6843T C14408T G20709T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_437956
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0095/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437957
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0096/2020
 C241T C1059T C3037T T5422Y C14408T G20709K T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438088
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0259/2020
 C241T C3037T C14408T T19839C T22521K A23403G C27393T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438089
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0260/2020
 C241T C3037T C14408T A20268G T22521K A23403G G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438090
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0261/2020
 C241T C3037T C14408T A20268G T22521K A23403G G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438092
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0263/2020
 C1722Y C8782T T9530G C15017Y C16699S C18452Y T22521K C26088T T27801C T28144C G29736T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_438093
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0264/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_438094
 2020-03-23 2020-05-12
 Austria hCoV-19/Austria/CeMM0265/2020
 C241T C3037T C14408T T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438155
 2020-03-23 2020-05-12
 United States hCoV-19/USA/WA-S602/2020
 C241T C1059T C3037T C11916T C14408T A23403G C24099T G25563T

EPI_ISL_438235
 2020-03-23 2020-05-12
 United States hCoV-19/USA/MD-HP00078/2020
 C241T C1059T C3037T C14408T G17808T A23403G G25563T

EPI_ISL_439066
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A11991G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439076
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439080
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G C29739A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439081
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12525T C12710T C26447T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439082
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T C14805T T17247C G26144T C29095T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439148
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB137/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_439613
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-726DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1113T ATG1605- A3569G A29771G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_439635
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-72731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G4185A G11083T C14805T T25202K G26144T C29013T AAAAA29899-

EPI_ISL_439644
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-72740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_439882
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-72704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14120T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439945
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-72573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16365T A20268G A23403G T25202K G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_441355
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-101EF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C17999T C26022T AAAAA29899-

EPI_ISL_441357
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-101F3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C8389Y C14408T A23403G GGG28881AAC

EPI_ISL_441359
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-101F6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- ATG1605- C3486T C6696T C11001T C21846T

EPI_ISL_441360
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-101F7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441363
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-101FD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C6696T C11001T T22729C C25844T

EPI_ISL_441364
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-101FE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- ATG1605- C6696T C11001T T22729C C23934T C25844T

EPI_ISL_441367
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-10201C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515R A2480R C2558Y C6664Y C9223Y G11083T C13517Y C14805T T17247Y G23069R G26144T G28325K

EPI_ISL_441370
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-102049/2020
 ATTAAAGGTTTATACC1- ATG1605- C7423T C28770T G29254T

EPI_ISL_441399
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-1022DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1420T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441402
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-102313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G C25350T

EPI_ISL_441403
 2020-03-23 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-102322/2020
 ATTAA1- ATG1605- T1927A C10989T C25546T

EPI_ISL_443270
 2020-03-23 2020-05-12
 France hCoV-19/France/B5353/2020
 C36T C241T C3037T C14408T C15324T C18904T A23403G G25606T C27893T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_443283
 2020-03-23 2020-05-12
 France hCoV-19/France/B5465/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_443301
 2020-03-23 2020-05-12
 France hCoV-19/France/IDF3359/2020
 AT1- T10C -12TA C241T C3037T C14408T C15324T G20238T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_443302
 2020-03-23 2020-05-12
 France hCoV-19/France/IDF3368/2020
 C241T C1059T C3037T A8998G C14408T A23403G G25563T C26873T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_443311
 2020-03-23 2020-05-12
 France hCoV-19/France/IDF4423/2020
 C241T AAGTCATTT686- C2416T C3037T G8371T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_443317
 2020-03-23 2020-05-12
 France hCoV-19/France/IDF4432/2020
 C241T C2416T C3037T G8371T C8905T C14408T C15738T A23403G G25563T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_444300
 2020-03-23 2020-05-13
 United Kingdom hCoV-19/England/BIRM-5E73B/2020
 C8782T T14996C C17747T A17858G C18060T T27384C T28144C G28632C

EPI_ISL_444612
 2020-03-23 2020-05-14
 Australia hCoV-19/Australia/QLDID938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T A23403G G25563T C27559T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_444984
 2020-03-23 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH6552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T G5230T C14408T A20268G A23403G

EPI_ISL_444985
 2020-03-23 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH6837/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_445079
 2020-03-23 2020-05-14
 United States hCoV-19/USA/TX_GCID_192000052/2020
 ATT1GCC A5T GG7- C241T C1059T C3037T G3892T C14408T A23403G G25563T A29883G A29889G A29891T A29893T A29895C

EPI_ISL_445081
 2020-03-23 2020-05-14
 United States hCoV-19/USA/TX_GCID_192000088/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_445183 LC546038
 2020-03-23 2020-05-15
 Japan SARS-CoV-2/Hu/Kng/19-865
 ATTAAAGGTT1- C241T C3037T C14408T A16085G A20268G A23403G AAAAAAAAAAAAAAAAA29887-

EPI_ISL_445223
 2020-03-23 2020-05-15
 Sweden hCoV-19/Sweden/20-06208/2020
 C241T C3037T C12213T C14408T A23403G GGG28881AAC

EPI_ISL_445298
 2020-03-23 2020-05-15
 Chile hCoV-19/Chile/Rancagua_8/2020
 A1T -6T C241T C3037T G10265A C14408T G15846R C19554M A23403G GGG28881AAC G29398T T29840G GATTTTAATAGCTTCTTAGGAGAATG29843- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445300
 2020-03-23 2020-05-15
 Chile hCoV-19/Chile/Rancagua_9/2020
 A1T T3A A5T C241T T1606C C3037T A12506R C14408T A23403G GGG28881AAC G29861C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_445328
 2020-03-23 2020-05-15
 Chile hCoV-19/Chile/Santiago_49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T G1319A C3037T C8389T A12506R C14408T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445329
 2020-03-23 2020-05-15
 Chile hCoV-19/Chile/Santiago_50/2020
 A1GGTTTATGATCCTTTGCAACCTGAATTAGACTCA A4C T9C TAT11CTC CC15GT T76W T78K ATG1605- C23934T C24034T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_445330
 2020-03-23 2020-05-15
 Chile hCoV-19/Chile/Santiago_51/2020
 ATTAAAGGTTTATACCT1- C241T C3037T A12506R C14408T C17766T A23403G G25429T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445341
 2020-03-23 2020-05-15
 Chile hCoV-19/Chile/Temuco_6/2020
 A1CCAACAACACAGTTTATGATCCTTTGCAACCTGAATTACAA T3G C241T C3037T C8389T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447127
 2020-03-23 2020-05-16
 Belgium hCoV-19/Belgium/ULG-0184/2020
 G1440A G2891A C26340T

EPI_ISL_447128
 2020-03-23 2020-05-16
 Belgium hCoV-19/Belgium/ULG-0186/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_447168 MT506685
 2020-03-23 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20197/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447212 MT506681
 2020-03-23 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20242/2020
 T490A G922A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G

EPI_ISL_447305
 2020-03-23 2020-05-17
 Israel hCoV-19/Israel/701002403/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAA29892-

EPI_ISL_447833 MT459834
 2020-03-23 2020-05-11
 Greece SARS-CoV-2/human/GRC/50_36277/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447886 MT481992
 2020-03-23 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CDC-0139/2020
 A12631G

EPI_ISL_447886 MT481992
 2020-03-23 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CDC-0139/2020
 A12631G

EPI_ISL_448814
 2020-03-23 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF14C/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC G29422T

EPI_ISL_448821
 2020-03-23 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF294/2020
 C2558T C6408T G11083T C14805T G26144T G28851T

EPI_ISL_450191
 2020-03-23 2020-05-20
 United States hCoV-19/USA/CA-SR0347/2020
 C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_450462 MT499188
 2020-03-23 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1213/2020
 ATTAAAGGTTT1- C241T C1059T C2980T C3037T C3096T A8882G C14408T C17125T A23403G G25563T C25587T

EPI_ISL_450463 MT499189
 2020-03-23 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1214/2020
 A1- C241T C1059T C2980T C3037T C3096T A8882G C14408T C17125T A23403G G25563T C25587T

EPI_ISL_450464 MT499190
 2020-03-23 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1215/2020
 T606C G1440A G2891A C7011T C18796T T21144C G28812T

EPI_ISL_450465 MT499191
 2020-03-23 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1216/2020
 ATTAA1- C241T C1059T C3037T C14408T A21562G A23403G G25563T

EPI_ISL_450466 MT499192
 2020-03-23 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1217/2020
 C241T C3037T C14408T G22021T A23403G GGG28881AAC

EPI_ISL_450467 MT499193
 2020-03-23 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1218/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451087
 2020-03-23 2020-05-23
 Australia hCoV-19/Australia/SAP048/2020
 C241T C3037T C14408T C15324T G22918T A23403G G28690T

EPI_ISL_451148
 2020-03-23 2020-05-23
 Australia hCoV-19/Australia/SAP154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T490A C3177T C8782T T18736C G19684T C23130A C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_451941
 2020-03-23 2020-05-25
 Germany hCoV-19/Germany/BAV-MVP0124/2020
 C241T C1059T C3037T C14408T G22340T A23403G G25563T T27384C

EPI_ISL_452121 MT512421
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/VI-CDC-3661/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452122 MT512422
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/VI-CDC-3705/2020
 C8782Y C17747T A17858G C18060T A24694T C25521Y T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452123 MT512423
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/VI-CDC-3688/2020
 C8782Y T10771C A11957G C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452182
 2020-03-23 2020-05-27
 Italy hCoV-19/Italy/VR_20COV11-181/2020
 TTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC2- C241T C3037T C14408T A23403G C26873Y C27046T GGG28881AAC TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452230
 2020-03-23 2020-05-27
 Sweden hCoV-19/Sweden/20-06165/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_452231
 2020-03-23 2020-05-27
 Sweden hCoV-19/Sweden/20-06167/2020
 C241T AAGTCATTT686- C1059T C3037T C4965T C14408T A23403G G25563T

EPI_ISL_452232
 2020-03-23 2020-05-27
 Sweden hCoV-19/Sweden/20-06169/2020
 C241T C14195A C14408T A23403G

EPI_ISL_452233
 2020-03-23 2020-05-27
 Sweden hCoV-19/Sweden/20-06209/2020
 C241T C3037T C12213T C14408T A23403G GGG28881AAC

EPI_ISL_452553
 2020-03-23 2020-05-27
 Spain hCoV-19/Spain/COV001320/2020
 G376T C8782T T9477A G12707R C14805T G25979T T27328Y T28144C C28657T C28863T

EPI_ISL_453477
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101EE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C6696T C11001T T22729C C25844T C29870M

EPI_ISL_453478
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101F10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1420T C3037T C6720Y C14408T A23403G GGG28881AAC

EPI_ISL_453479
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101F2F/2020
 ATTAAAGGTTTATACCTTCCCAG1- ATG1605- C14183T G29747K

EPI_ISL_453480
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101F4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C12747T C14408T A23403G C25350T

EPI_ISL_453481
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101F98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG1605- C6696T C11001T C13458T C29870M

EPI_ISL_453482
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101FA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- ATG1605- A2404T C6696T C11001T G26158A

EPI_ISL_453483
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101FC5/2020
 ATTAAAGGTTTATACC1- ATG1605- C6696T C11001T

EPI_ISL_453489
 2020-03-23 2020-05-27
 United Kingdom hCoV-19/England/NORT-288DF8/2020
 C241T C3037T A11755G C14408T A23403G C27046T GGG28881AAC

EPI_ISL_453826
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C7604T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453840
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C8782T C26088T T28144C CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_453844
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8140T C8782T C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453846
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8140T C8782T C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454137
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454167
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4201T G10700A C14408T A23403G A23941T C26527T G28842T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454245
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454246
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454247
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T T8041C C14408T G16117T A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454248
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454249
 2020-03-23 2020-05-28
 Portugal hCoV-19/Portugal/PT0525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C19862T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454355
 2020-03-23 2020-05-28
 United States hCoV-19/USA/PA-MGEL65/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454361
 2020-03-23 2020-05-28
 United States hCoV-19/USA/PA-MGEL75/2020
 T224C C8782T A18399G C18647T C25549T G25740T G25947T T26465C T28144C C29095T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454766
 2020-03-23 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10017/2020
 ATTAA1- C241T C3037T C4999T C14408T C19170T G19509A A23403G C26313T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_454767
 2020-03-23 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10018/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G A24862G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_454771
 2020-03-23 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10022/2020
 ATTAAA1- C241T C3037T C14408T A23403G G24077T AAAAAA29898-

EPI_ISL_455588
 2020-03-23 2020-06-01
 Thailand hCoV-19/Thailand/Trang_5008/2020
 C241T C3037T C14408T C19170T G19509A A23014C A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_455701
 2020-03-23 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_1713/2020
 C241T C3037T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_456218
 2020-03-23 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1451/2020
 G1440A G2891A A6944G C9430T C26042T

EPI_ISL_456228
 2020-03-23 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1618/2020
 C241T C1427T C3037T G3419A C14408T A23403G GGG28881AAC

EPI_ISL_456236
 2020-03-23 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1626/2020
 C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G A29731G

EPI_ISL_456255
 2020-03-23 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1796/2020
 C241T G370A C3037T G11083T C14408T C18877T A23403G G25563T G26834T

EPI_ISL_456256
 2020-03-23 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1797/2020
 C241T C1267T C3037T C14408T G14580T A23403G G28378A

EPI_ISL_456656
 2020-03-23 2020-06-01
 United States hCoV-19/USA/UN-NR-52282/2020
 ATTAAAGGTTTATA1- C1663T C8782T C12919T C21636T G22661T G23607A C24034T C24566G T26729C TTTTAAAGTTTCCATTTGGAATCTTGA27264- G28077C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_457099
 2020-03-23 2020-06-02
 United Kingdom hCoV-19/England/EXET-1357C0/2020
 ATG1605- C20270T C28087T A29683T

EPI_ISL_458642
 2020-03-23 2020-06-04
 United Kingdom hCoV-19/England/NORT-288E40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G7393T A10323G G11083T C14805T T17247C G26144T C28377T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459559
 2020-03-23 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-1704C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459696
 2020-03-23 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-170107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G1857T A5570G A9483G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460055
 2020-03-23 2020-06-05
 United States hCoV-19/USA/MN-MDH-152/2020
 ATTA1- C241T C1059T C3037T C10319T C11575T C14408T A20262G G21305A A23403G G25563T C27964T C28868T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_460056
 2020-03-23 2020-06-05
 United States hCoV-19/USA/MN-MDH-156/2020
 ATTA1- C241T C1059T A2969G C3037T C14408T A23403G G25563T G26389T T26545C C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_460057
 2020-03-23 2020-06-05
 United States hCoV-19/USA/MN-MDH-162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C9430T C14408T C14925T C18652T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_460058
 2020-03-23 2020-06-05
 United States hCoV-19/USA/MN-MDH-163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1238T C8782T C17747T A17858G C18060T T28144C T28924C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460059
 2020-03-23 2020-06-05
 United States hCoV-19/USA/MN-MDH-164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C14786T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_460154 MT520229
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C2416T C3037T G11083T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460174 MT520249
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00059/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C958T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460264 MT520339
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C4551T C8782T C12890T C17747T A17858G C18060T A24694T T28144C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_460271 MT520346
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00014/2020
 A1- C241T T2149C C2416T C3037T C14408T A23403G G25563T G26233T C27577T C29545T

EPI_ISL_460291 MT520366
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00048/2020
 ATTAAA1- C241T C313T C3037T C14408T C21058T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460324 MT520399
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00024/2020
 ATTA1- C241T C3037T G8653T C14408T A23403G GGG28881AAC

EPI_ISL_460391 MT520466
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00083/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C6762T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460446 MT520521
 2020-03-23 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00071/2020
 ATTAAA1- C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460677
 2020-03-23 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T G20433T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461151
 2020-03-23 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C3876T G8353T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461152
 2020-03-23 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14583T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462263
 2020-03-23 2020-06-08
 Belgium hCoV-19/Belgium/DJ-0323409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17964T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462264
 2020-03-23 2020-06-08
 Belgium hCoV-19/Belgium/KWA-0323410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C12534T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462462
 2020-03-23 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7357/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T A23403G T25550A G25922T A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462924
 2020-03-23 2020-06-08
 United States hCoV-19/USA/WY-WYPHL-00031/2020
 ATTA1- C8782T A17858G C18060T A20465R A21141G A24694T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_463744
 2020-03-23 2020-06-10
 Cyprus hCoV-19/Cyprus/004/2020
 C241T A2869G C3037T C14408T C17733T A23403G GGG28881AAC C29095T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_465700
 2020-03-23 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241214/2020
 ATT1- C241T C3037T G3539R C14408T A20268G A23403G G27204T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_467375
 2020-03-23 2020-06-13
 Indonesia hCoV-19/Indonesia/MND-EIJK06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAG1- G242T T12283C G29853T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_468308
 2020-03-23 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-141/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C3885T C14408T A23403G G25088T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_468313
 2020-03-23 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-148/2020
 GT24CA C241T C3037T C14408T A23403G G25088T GGG28881AAC C29774T A29860G AAAAAAAAAAAAA29891-

EPI_ISL_468399 MT628135
 2020-03-23 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1428/2020
 C241T C379A C1059T C3037T C14408T A23403G G25012A G25563T

EPI_ISL_468400 MT628136
 2020-03-23 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1430/2020
 C8782T C17747T A17858G C18060T T27384C T28144C C28977Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468402 MT628138
 2020-03-23 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1432/2020
 C241T C1059T C2536T C3037T C14408T G16852T A23403G G25563T C27964T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468727
 2020-03-23 2020-06-17
 Belgium hCoV-19/Belgium/UGent-76/2020
 T514C ATG1605- G14622T C17410T T18723C

EPI_ISL_468817
 2020-03-23 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2425/2020
 C7945T C8782T G11146C C17470T G25939T C26088T T26187C G27659R T28144C C28844T

EPI_ISL_471256
 2020-03-23 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6027T A10236G G11083T C14805T C16887T T17247C G21624C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471550
 2020-03-23 2020-06-22
 Czech Republic hCoV-19/Czech Republic/NRL_5240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C25703T A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471975
 2020-03-23 2020-06-23
 United Kingdom hCoV-19/England/EXET-137403/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475076
 2020-03-23 2020-06-23
 Belgium hCoV-19/Belgium/UGent-116/2020
 C241T C1059T C3037T C9891T C14408T G19384A A23403G G25563T

EPI_ISL_475077
 2020-03-23 2020-06-23
 Belgium hCoV-19/Belgium/UGent-117/2020
 C241T C3037T C5730T C14408T G14829T C15324T C20178T A23403G

EPI_ISL_475099
 2020-03-23 2020-06-23
 Sweden hCoV-19/Sweden/20-08387/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475141
 2020-03-23 2020-06-23
 Sweden hCoV-19/Sweden/20-50457/2020
 C241T C3037T C14408T C21855T A23403G C27046T GGG28881AAC

EPI_ISL_475378
 2020-03-23 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C4C5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C26735T C26885T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475509
 2020-03-23 2020-06-23
 United Kingdom hCoV-19/England/SHEF-D333A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G26144T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476772
 2020-03-23 2020-06-25
 United States hCoV-19/USA/CA-CZB-1755/2020
 ATTAAAGGTTTATACC1- GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_476787
 2020-03-23 2020-06-25
 United States hCoV-19/USA/CA-CZB-1770/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_476898
 2020-03-23 2020-06-26
 United States hCoV-19/USA/AK-PHL141/2020
 ATTAAAGGTTTATACCTTCC1- A4236G G11083T C14805T C18032A T25655C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_476899
 2020-03-23 2020-06-26
 United States hCoV-19/USA/AK-PHL142/2020
 ATT1- C241T T833C C1059T C3037T C14408T G15913T A23403G G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_477199
 2020-03-23 2020-06-29
 Italy hCoV-19/Italy/IZSPB_2167/2020
 A1CCGCCCGA C241T C3037T C7834T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_477200
 2020-03-23 2020-06-29
 Italy hCoV-19/Italy/IZSPB_2161/2020
 ATTAAAGGTTT1- C241T C3037T C7834T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_477201
 2020-03-23 2020-06-29
 Italy hCoV-19/Italy/IZSPB_2144/2020
 A1CCCTGA C241T C3037T C14408T A23403G AAAAA29871CTTCT A29877G AAA29881GTG AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_477696
 2020-03-23 2020-06-29
 United States hCoV-19/USA/WA-UW-2036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T C14408T A23403G G25523T G25563T T27869C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_478565
 2020-03-23 2020-06-30
 United Kingdom hCoV-19/England/NORT-284767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C27208T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478566
 2020-03-23 2020-06-30
 United Kingdom hCoV-19/England/NORT-284785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478567
 2020-03-23 2020-06-30
 United Kingdom hCoV-19/England/NORT-2847B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7459T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478571
 2020-03-23 2020-06-30
 United Kingdom hCoV-19/England/NORT-2848BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G545A C4755T G7405T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479642
 2020-03-23 2020-07-01
 Canada hCoV-19/Canada/NB-226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C289T C1059T C3037T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479667 MT679201
 2020-03-23 2020-06-29
 United States SARS-CoV-2/human/USA/NYU-VC-010/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T A23403G G25563T G29540A AAAAAAAAAAAAA29891-

EPI_ISL_479927
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T42C C8782T C12081T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479936
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2416T C3037T C14408T C21575T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479943
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0259/2020
 ATTAAAG1- C241T C313T C3037T C9430T C14408T G22199T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479962
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G A23977G GGG28881AAC G29764T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479963
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C2902T C3037T C14408T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479964
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C11752T C25665T C26447T TTA27698- T28912C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_479965
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C11752T C25665T C26447T TTA27698- T28912C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479990
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480000
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T G16221T C17439T A17829T A23403G A26530G TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480017
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480226
 2020-03-23 2020-07-01
 Japan hCoV-19/Japan/PG-0198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A652G C2061T -4149T C6312A G11083T C13730T A22742T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480389 MT772556
 2020-03-23 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481742
 2020-03-23 2020-07-03
 Canada hCoV-19/Canada/NB_243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11851T C14408T A23403G G25429T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482313
 2020-03-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-030/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_482328
 2020-03-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-046/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_482329
 2020-03-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-048/2020
 A2480G C2558T G11083T C14805T G26144T C27012T

EPI_ISL_482331
 2020-03-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-051/2020
 A2550G G11083T C14805T G26144T

EPI_ISL_482449
 2020-03-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-207/2020
 C8782T C17747T A17858G C18060T T28144C C29769T

EPI_ISL_482467
 2020-03-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-232/2020
 A187G C241T C1616T C3037T C14408T A23403G C25688T G29737T

EPI_ISL_482480
 2020-03-23 2020-07-03
 Canada hCoV-19/Canada/MB_75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482745 MT705206
 2020-03-23 2020-07-04
 Netherlands SARS-CoV-2/human/NLD/Leiden-0008/2020
 ATTAA1- C241T C3037T C5467Y C12846T C14408T C18928Y A23403G

EPI_ISL_483008
 2020-03-23 2020-07-06
 United States hCoV-19/USA/MN-MDH-1287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_483009
 2020-03-23 2020-07-06
 United States hCoV-19/USA/MN-MDH-1288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T G11083T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483065 MT710714
 2020-03-23 2020-07-06
 Brazil SARS-CoV-2/human/BRA/RJ01/2020
 ATTAAAGGTTTA1- C241T G598T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAA29891-

EPI_ISL_483080
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP239/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483089
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP296/2020
 ATTA1- C241T C3037T C10078T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_483113
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP336/2020
 ATTAAAGGT1- C241T T2998A C3037T C14408T A23403G

EPI_ISL_483116
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP339/2020
 ATT1- C4540T C8782T T9477A C13584T C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483117
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP340/2020
 ATT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483119
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP342/2020
 AT1- C241T G677A C3037T C14408T G14580T A23403G

EPI_ISL_483121
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP345/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_483126
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- G1440A G2891A C28868T

EPI_ISL_483129
 2020-03-23 2020-07-07
 Australia hCoV-19/Australia/SAP357/2020
 A1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483723
 2020-03-23 2020-07-08
 Israel hCoV-19/Israel/n14277/2020
 C241T A404T C1059T -1290A A2514- C5365T G5558T -5818T A9373G A10536G T12157G G12355T G13390T C14408T C18481- G19849T A23403G G25563T A27646- A28811G

EPI_ISL_483971
 2020-03-23 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T A11781G C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483976
 2020-03-23 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C13009T C14805T G26144T A27388G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483982
 2020-03-23 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D5BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C11074T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485975
 2020-03-23 2020-07-10
 United States hCoV-19/USA/WA-UW-2022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C13620T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486435
 2020-03-23 2020-07-10
 Latvia hCoV-19/Latvia/051/2020
 C241T C3037T C14408T A23403G A28779G GGG28881AAC

EPI_ISL_487828
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488510
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-284794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A ATG1605- C1616T C20270T C24642G A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488669
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-2847FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488701
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-2849AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C673T C9962T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488753
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-281C7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488790
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-281BE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4327T G11083T G11365T C14805T G26144T G29528A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488802
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-281C98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488819
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-281C01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G25507K C26882T G26951T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488830
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-281B40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489594
 2020-03-23 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-16FEF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17470T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490978
 2020-03-23 2020-07-15
 United States hCoV-19/USA/AR-UW-MAYO83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AAC34TTT C241T C2416T C3037T C10712T C14408T A23403G G25563T C28890T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_491004
 2020-03-23 2020-07-15
 United States hCoV-19/USA/VT-UW-MAYO49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T G29688A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_491456
 2020-03-23 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C3037T C5365T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_491910 MT776404
 2020-03-23 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4231G C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492186
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-132839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492507
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130CB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2032G A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492508
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130D2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492523
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130C4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C5849T G11083T C14805T C25583T G26062C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492591
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130C3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1426T A2480G C2558T G11083T G14710T C14805T G16852T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492615
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130D0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492642
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130D1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T433C C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492660
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130D4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492676
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130CD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C11471T C25342A C27942T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492683
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130CE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492727
 2020-03-23 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130C11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6582T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493203
 2020-03-23 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-009/2020
 AT1CCTTGAAACTGCTCAAAA A4T T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G AAAAAA29871GTGGCC AAA29878TGT A29882G -29886CATTTTACCC -A29890TTACAATCTAGTCAAGCGTGGCAACCGGGTGTTGCTATGCCTAATCTTTC AAA29896TGC A29902G

EPI_ISL_493204
 2020-03-23 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-010/2020
 ATTAAAGGTTT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G AA29881TG -AA29884CTTTAACCTTGTGGCTTG AA29889GT A29892C -29895TTATGAACCTCT A29897C A29899C A29902G -29904CCATGTTGACATACTAGGACCTCTTTCTGCTCAAACTG

EPI_ISL_494617
 2020-03-23 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_494714
 2020-03-23 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1649/2020
 AT1- C241T C3037T C14408T A20268G A23403G T24076C C27630T C28854T

EPI_ISL_494747
 2020-03-23 2020-07-22
 Taiwan hCoV-19/Taiwan/NCKUH-008/2020
 AT1GC A4T A2480G C2558T G11083T C14805T G26144T A27386- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_495342 MT791878
 2020-03-23 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0436/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C26013T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_495344 MT791880
 2020-03-23 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0438/2020
 ATTAAAGGT1- C241T C3037T G7641A C14408T C21575T A23403G GGG28881AAC AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_495360 MT791896
 2020-03-23 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0454/2020
 AT1- C241T C3037T C7267T C14408T G17259T C18877T A23403G G25563T C28308T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_495611
 2020-03-23 2020-07-23
 United States hCoV-19/USA/MN-MDH-1312/2020
 ATTAAAGGTTTA1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_495657 MT821783
 2020-03-23 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1482/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496920
 2020-03-23 2020-07-24
 United States hCoV-19/USA/MN-MDH-1334/2020
 AT1- C8782T C17747T A17858G C18060T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_497744
 2020-03-23 2020-07-25
 Colombia hCoV-19/Colombia/85082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498042
 2020-03-23 2020-07-26
 South Korea hCoV-19/Korea/KCDC2141/2020
 A1- T3A C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_498048
 2020-03-23 2020-07-26
 South Korea hCoV-19/Korea/KCDC2147/2020
 AT1- G11083T C12115T G13627T C14805T C15540T G26144T A28338G

EPI_ISL_498052
 2020-03-23 2020-07-26
 South Korea hCoV-19/Korea/KCDC2151/2020
 ATTA1- C241T C1059T C3037T C9214T C10889T C14408T A23403G G25563T C25821T

EPI_ISL_498053
 2020-03-23 2020-07-26
 South Korea hCoV-19/Korea/KCDC2152/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_498153
 2020-03-23 2020-07-26
 Colombia hCoV-19/Colombia/87973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498177
 2020-03-23 2020-07-27
 Vietnam hCoV-19/Vietnam/HCMC-05006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T C15324T A23403G GAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29711-

EPI_ISL_499306
 2020-03-23 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D22B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499307
 2020-03-23 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D22C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499308
 2020-03-23 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D22D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500688
 2020-03-23 2020-07-29
 Australia hCoV-19/Australia/NSW2249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500689
 2020-03-23 2020-07-29
 Australia hCoV-19/Australia/NSW2250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500693
 2020-03-23 2020-07-29
 Australia hCoV-19/Australia/NSW2256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501167
 2020-03-23 2020-07-30
 United States hCoV-19/USA/TX-GCID-192000051B/2020
 ATTAAAGGTTTA1- TA13CC C16A T490A C3177T C4320T C6040T C8782T C8950T C9438T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_501178
 2020-03-23 2020-07-31
 Malaysia hCoV-19/Malaysia/0478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T10966W C10969Y G11083T C13730T C15216Y C19524T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501179
 2020-03-23 2020-07-31
 Malaysia hCoV-19/Malaysia/0784/2020
 ATTAAAGGTTTATACCTTCCC1- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501180
 2020-03-23 2020-07-31
 Malaysia hCoV-19/Malaysia/0931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T7621C G11083T C13730T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501563
 2020-03-23 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130DA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T G22203T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501572
 2020-03-23 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130D69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G13926T C14408T C22792T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501596
 2020-03-23 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130E48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501599
 2020-03-23 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130DE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1802R C2416T C3037T C14408T C14786T G20578T C20762Y A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501607
 2020-03-23 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130EFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501626
 2020-03-23 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260EF63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T C14408T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501629
 2020-03-23 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260EF72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4668T A10304W C20480T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506965
 2020-03-23 2020-08-02
 South Korea hCoV-19/Korea/KCDC2171/2020
 C241T C3037T C14408T A23403G C25350T C27610T

EPI_ISL_506966
 2020-03-23 2020-08-02
 South Korea hCoV-19/Korea/KCDC2172/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_506967
 2020-03-23 2020-08-02
 South Korea hCoV-19/Korea/KCDC2173/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_506968
 2020-03-23 2020-08-02
 South Korea hCoV-19/Korea/KCDC2174/2020
 AT1- C241T C1059T C3037T C3253T C14408T C18060T C22388T A23403G G25563T

EPI_ISL_506969
 2020-03-23 2020-08-02
 South Korea hCoV-19/Korea/KCDC2175/2020
 C241T C832T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_506970
 2020-03-23 2020-08-02
 South Korea hCoV-19/Korea/KCDC2176/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_507014 MT820465
 2020-03-23 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC08/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T A10786G C14408T C15720T A23403G GGG28881AAC A29382T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507059
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A23534G C26534T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507060
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507062
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D1A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C26534T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_507063
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D1B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G21850T A23403G C26534T G28001T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_507064
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D1C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507065
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D1D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C26534T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_507066
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D1E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C20844T A23403G C26534T C27503A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507067
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D1F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C207T ATG1605- C8917T C17898T C19011T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507068
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D20C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A1515G G11083T C14805T T17247C G26144T T26318C G28979T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507069
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D21B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C19694T A23403G C26534T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507137
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D225A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T C26340T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507139
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T C9360T G11083T C14805T G26144T C26340T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507140
 2020-03-23 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D22A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507700
 2020-03-23 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507974
 2020-03-23 2020-08-03
 United States hCoV-19/USA/MN-MDH-1387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_508787 MT834631
 2020-03-23 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0583/2020
 ATTAAAGGT1- C241T C1059T C3037T G3692T C11916T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508800 MT834644
 2020-03-23 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0596/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508802 MT834646
 2020-03-23 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0598/2020
 ATTA1- A2480G C2558T A4912C G11083T C14805T C17010A C21575T G26144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508952
 2020-03-23 2020-08-04
 France hCoV-19/France/ARA12638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCT1- C241T C1059T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_508953
 2020-03-23 2020-08-04
 France hCoV-19/France/ARA12742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCT1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_509007
 2020-03-23 2020-08-04
 France hCoV-19/France/ARA1276/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T C21017T A23403G G23429T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509008
 2020-03-23 2020-08-04
 France hCoV-19/France/ARA12740/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509434 MT827202
 2020-03-23 2020-07-30
 Brazil SARS-CoV-2/human/BRA/RJ-DCVN1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T G598T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A A29897C AA29902-

EPI_ISL_509751 MT846455
 2020-03-23 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0693/2020
 ATTA1- C241T C1059T C1457T C3037T C10851T C14408T A23403G C25275T G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_510923
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT0664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7604T C14408T A20268G T21886C A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511009
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT0750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G4162T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511011
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT0752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3738T G4162T C14408T C16042T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511012
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT0753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C3037T G4162T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511014
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT0755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G4162T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511016
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT0757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511186
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT0929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511238
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT1277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11674T C14408T A23403G G25273T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511239
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT1278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T T21571C G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511241
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT1280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C16733T C19152T C21621T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511242
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT1281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A28779G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511243
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT1282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A26927G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511367
 2020-03-23 2020-08-07
 Portugal hCoV-19/Portugal/PT1408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3924T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511483
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT0659a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C3140T C14408T A23403G G24077T C28512T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511536
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT0988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511537
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT0989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511539
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT0991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511569
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT1022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G C23601T G24077T C28512T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511571
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT1024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25650T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511721
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT1175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G13348T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511722
 2020-03-23 2020-08-08
 Portugal hCoV-19/Portugal/PT1176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25593T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511897
 2020-03-23 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_1863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C2558T G11083T A13922T C14805T G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_512507
 2020-03-23 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16975A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C6990T C14408T A23403G C29200T

EPI_ISL_513473 MT886347
 2020-03-23 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- G204T C241T C1059T C3037T G8676T C14408T G17302T G23126T A23403G C23733A G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513481 MT886355
 2020-03-23 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATT1- C241T C1059T C3037T C14408T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513482 MT886356
 2020-03-23 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATC1- C241T C3037T C14408T C18877T A23403G G25563T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513508 MT886384
 2020-03-23 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- C241T C1722T C3037T G11083T C14408T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_513509 MT886385
 2020-03-23 2020-08-13
 United States SARS-CoV-2/human/USA/ME-HETL-J0100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T C3037T C14408T C17992A C18877T A23403G G25563T C25702T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_514466
 2020-03-23 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D176B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514640 MT892987
 2020-03-23 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1421/2020
 ATTAAAGGTTTA1- C241T AAGTCATTT686- C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514641 MT892988
 2020-03-23 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G C25810A GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514642 MT892989
 2020-03-23 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G C25810A GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514661 MT893008
 2020-03-23 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G204T C241T C1059T C3037T G8676T C14408T G22442K A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515322
 2020-03-23 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_515324
 2020-03-23 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0041/2020
 ATTA1- C241T C3037T C14408T C14786T C21233T A23403G GGG28881AAC

EPI_ISL_515325
 2020-03-23 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0042/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_515526
 2020-03-23 2020-08-19
 Brazil hCoV-19/Brazil/SP-602/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C21575T A23403G G25088T GGG28881AAC TC29856CT TAG29859GTC GAATG29864AGTCA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_515541
 2020-03-23 2020-08-19
 Brazil hCoV-19/Brazil/SP-627/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C14408T A23403G G25088T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_515544
 2020-03-23 2020-08-19
 Brazil hCoV-19/Brazil/SP-629/2020
 TTAAAGGTTTATACCTTCCCAGGT2- T115C C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857T

EPI_ISL_515897
 2020-03-23 2020-08-20
 United States hCoV-19/USA/CA-CDPH004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516308
 2020-03-23 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516311
 2020-03-23 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C1059T C3037T A7255T C14408T C14790T C15037T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517297
 2020-03-23 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T A4501G T10480C G11083T C14805T T26130C G26144T C27559T

EPI_ISL_517345
 2020-03-23 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9C8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517359
 2020-03-23 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9D8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G680A C3037T C14408T G15438T A20268G A23403G C27600Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517366
 2020-03-23 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9DF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517448
 2020-03-23 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA3E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15237T A23403G G26398T GGG28881AAC

EPI_ISL_517449
 2020-03-23 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA3F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_518823
 2020-03-23 2020-08-25
 Oman hCoV-19/Oman/RESP-20-4941/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T A23403G GGG28881AAC -29851T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_518860 MT919999
 2020-03-23 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T G14186T T18736C G18781A G19684T C24034T T26729C C27635T G28077C T28144C A29700G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_518863 MT920002
 2020-03-23 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T G14186T T18736C G18781A G19684T C24034T T26729C C27635T G28077C T28144C A29700G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518869 MT920008
 2020-03-23 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A7966G C8782T A17858G C18060T A22422G T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_518887 MT920027
 2020-03-23 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A20268G A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_518888 MT920028
 2020-03-23 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1495/2020
 ATTAAAGGTT1- C241T C379A C1059T G2687A C3037T G5194T C14408T A23403G G24332T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_523290
 2020-03-23 2020-08-26
 Netherlands hCoV-19/Netherlands/LI-EMC-85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26305T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_525425
 2020-03-23 2020-08-29
 Oman hCoV-19/Oman/RESP-20-4943/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T G10265A C14408T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_525626
 2020-03-23 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-26730-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T C28006T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525627
 2020-03-23 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-27452-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C3168T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525629
 2020-03-23 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-27938-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1917T C3037T C7768T C14408T A19892C G20005A A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_527035
 2020-03-23 2020-09-03
 Australia hCoV-19/Australia/NSW2519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G14656C C17747T A17858G C18060T A24694T T28144C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527858
 2020-03-23 2020-09-05
 Brazil hCoV-19/Brazil/SP-279/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C337T C3037T C14408T A23403G T27299C GGG28881AAC G29000T T29148C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527874
 2020-03-23 2020-09-05
 Nigeria hCoV-19/Nigeria/ED02-CV156/2020
 ATTAAA1- A2480G C2558T G11083T C14805T G26144T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_528340
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42202970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T C15324T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528341
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T T3011C C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528343
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T C15324T A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528344
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C15324T A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_528345
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C5979T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528347
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2773T C3037T C14408T C18348T A23403G G24236T G29737T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528348
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528349
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G6404T C8208T G13723T C14408T C15324T C19145T A23403G C29362T AAAAAAAAAAAAA29891-

EPI_ISL_528350
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T A3538G C14183T C14408T C15324T G22708C A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_528351
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G G28690T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528354
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A263G C1191T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528359
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1856G C3037T C14408T A23403G C27046T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528360
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203612/2020
 ATTAAAGGTTTA1- C241T C3037T C12676T C14408T C15324T G22035A A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528362
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203645/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A3078T C14408T C15324T A18425C A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528363
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C1568T C3037T C14408T A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_528364
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- A187G C241T C3037T C14408T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528365
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4285A C14408T C15324T A23403G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_528366
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G6404T C8208T G13723T C14408T C15324T C19145T A23403G C29362T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_528367
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C643T C3037T C3787T C11518T C14408T C15324T C16726T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528368
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BL-UHB-42203765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C13138G C14408T C15324T A23403G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_528369
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T C20594T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_528370
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42203813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G6404T C8208T G13723T C14408T C15324T C19145T A23403G C29362T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528371
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42204170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2933T C3037T C14408T C15324T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_528373
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-42204989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G6352T C14408T C15324T C18788T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528381
 2020-03-23 2020-09-06
 Switzerland hCoV-19/Switzerland/BS-UHB-65238783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C26607T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528927
 2020-03-23 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE6202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C3037T C14408Y A23403G GGG28881AAC AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_528928
 2020-03-23 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE6218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C3037T C14408Y A23403G GGG28881AAC TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_529218
 2020-03-23 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61AC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C5826T C6026T C8090T C10789T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530044
 2020-03-23 2020-09-10
 Spain hCoV-19/Spain/MD-LP40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T14313C C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530263
 2020-03-23 2020-09-11
 Australia hCoV-19/Australia/QLD983/2020/P1
 ATTA1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T

EPI_ISL_534835
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3075/2020
 C241T C3037T C14408T C20740A C22986T A23403G GGG28881AAC

EPI_ISL_534839
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C3037T C14408T A23403G GGG28881AAC G29868R A29872W A29874M A29877M A29880M AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_534872
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B35EF/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_534903
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3B47/2020
 C241T C3037T C14408T G22592T A23403G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_534910
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3D50/2020
 T13C A2410C G11083T C14805T C18086T G25691T G26144T G28842T A29898R

EPI_ISL_534925
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4038/2020
 C241T C3037T C9561T C14408T A23403G GGG28881AAC AAA29881MMM AA29889WM AAAAAAAA29896-

EPI_ISL_534947
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B434E/2020
 C241T C3037T C14408T T19839C A23403G C25731T C26681T GGG28881AAC

EPI_ISL_534982
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B491F/2020
 C241T C3037T C14408T C15540T A23403G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_534983
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B492E/2020
 C241T C2455T C3037T A10972C C14408T A23403G G25429T C28253T C29730T

EPI_ISL_534985
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B49D3/2020
 ATTAAAGGTTTATACCTTC1- C241T C2416T C3037T C14408T A23403G G25563T A29898W AAAA29900-

EPI_ISL_535007
 2020-03-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4D04/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_535996
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232810/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T CC14407TT C15324T A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536000
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232917/2020
 ATTAAAGGT1- C241T C3037T C14408T C15324T A23403G C25433T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536001
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T CC14407TT C15324T A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536004
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00232952/2020
 ATTAAA1- T10W T13W C241T C3037T C14408T C23191T A23403G C27046T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536013
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1404T C3037T C14408T G15732T T19143C A20268G A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536017
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1912T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536018
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536020
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T C5575Y C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536021
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233380/2020
 ATTAAA1- A187G C241T C1616T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_536022
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233398/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2416T C3037T C5055T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_536023
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C313T C3037T C14408T C21997Y A23403G C25904T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536024
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T A2015R C3037T C11916T A13711R C14408T C18998T A23403G G25563T G29540A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536025
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233496/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T T27901Y AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_536028
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536029
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233585/2020
 ATTAAAGGTTTATACCTTCCCA1- G204T C241T C3037T C14408T C15324T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536031
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233661/2020
 ATTAAA1- C241T C3037T C14408T T19381Y A20268G A23403G C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_536032
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C15324T A23403G C25433T A26487G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536033
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233683/2020
 ATTAA1- C241T C3037T CC14407TT C15324T A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536034
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233695/2020
 ATTAAA1- C241T C3037T C14408T G16117K A20268G A23403G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536035
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233702/2020
 ATTAAA1- C241T C1059T C3037T G8828A C12241T C14408T G19009T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_536037
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233721/2020
 ATTAAA1- C241T C3037T CC14407TT C15324T C21110T A23403G C25433T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_536038
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233734/2020
 ATTAAA1- C241T C3037T C7564T C14408T A20268G A23403G C23635T G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536039
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G G28690T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536040
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233812/2020
 C241T C1059T C3037T C14408T A17910R G20487K A23403G G25217T G25563T C29835T A29865R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_536041
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233835/2020
 ATT1- C241T C3037T C3176T C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536042
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233849/2020
 ATTAAA1- C241T C1059T C3037T T3952C C5183T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536044
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C23191T A23403G C27046T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536045
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00233870/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T C16877T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536047
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A2480G C2558T G11083T C14805T G26144T G29742T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536049
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T C18657T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536050
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536051
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234333/2020
 ATTAAAGGTTTATACC1- C241T C3037T C3373A G10201T C14408T A23403G GGG28881AAC C29520T C29585T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536052
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536054
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536055
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536056
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234533/2020
 ATTAAAGGTTTATACC1- C36S C241T C3037T C14408T C15324T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536058
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234540/2020
 ATTAAAGGTTTA1- C4475Y C8782T C16293T C20178T T28144C G28878A G29742A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536059
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T C18657T T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536062
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C18687T A20268G A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536063
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234621/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C313T C3037T C14408T A23403G C25904T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536064
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T G3335A C14408T C21789Y A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536065
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536066
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234652/2020
 ATTAAAGGT1- C241T C3037T C5730T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536067
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234655/2020
 ATTAAAGGT1- C241T C1059T G1148T C3037T C14408T C21575T A23403G G25217T G25563T C26150T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536068
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536069
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T T3670C C14408T C18877T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536071
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_536076
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234877/2020
 A1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536086
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C5730T C8208T G9267A T9667C C14408T A23403G G25278K G25947T G28361A GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536108
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2333T C3037T C14408T C19170T G19509A A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536111
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T C17747T A17858G C18060T G25660T T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536112
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T G23285T G25660T T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536115
 2020-03-23 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235965/2020
 ATTAAAGGTTT1- C241T C3037T A5097M G10265A C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_537492
 2020-03-23 2020-09-16
 United States hCoV-19/USA/CA-UCLA-152/2020
 ATTAAAGGTTT1- C241T C3037T C3923T C14408T C19813T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_538452
 2020-03-23 2020-09-17
 Singapore hCoV-19/Singapore/921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A895G G1172A C2942T G4390T C8782T C9598T G20134T G24047A T28144C A29412G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538765
 2020-03-23 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9EA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T C18486T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539058
 2020-03-23 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8B8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539148
 2020-03-23 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8D6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A C1959T G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539215
 2020-03-23 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539493
 2020-03-23 2020-09-18
 Czech Republic hCoV-19/Czech Republic/NRL-5555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540986
 2020-03-23 2020-09-22
 Peru hCoV-19/Peru/LAL-UPCH-0109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C7869T C14408T G17338T A23403G C24621T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_547465
 2020-03-23 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11596T C14408T C15342T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547473
 2020-03-23 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4655T G8422A C9246T A9484G C29546A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547515
 2020-03-23 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1606C C12068T C12621T G17523T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547532
 2020-03-23 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548247
 2020-03-23 2020-09-25
 Sweden hCoV-19/Sweden/20-08331/2020
 C241T AAGTCATTT686- C3037T C14408T A23403G C25350T

EPI_ISL_548346
 2020-03-23 2020-09-26
 United States hCoV-19/USA/CA-CZB-3640/2020
 C241T G545T C3037T C14408T A23403G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_548355
 2020-03-23 2020-09-26
 United States hCoV-19/USA/CA-CZB-3641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G545T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548983
 2020-03-23 2020-09-28
 Singapore hCoV-19/Singapore/975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T G12514T C14408T G15380T A23403G G25563T C29503Y AAAAAAAAAAAA29892-

EPI_ISL_548994
 2020-03-23 2020-09-28
 Singapore hCoV-19/Singapore/986/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_548997
 2020-03-23 2020-09-28
 Singapore hCoV-19/Singapore/989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5490R C14408T A18562C A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_549004
 2020-03-23 2020-09-28
 Singapore hCoV-19/Singapore/996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C6310A C6312A A8887R G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_560415
 2020-03-23 2020-09-29
 Canada hCoV-19/Canada/QC-LSPQ-L00234169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T GTCATGTTAT510- G520K AAGTCATTT686- C3037T G6374A C14408T A20268G G20730T A23403G G24368T C25658Y A26667G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_560592
 2020-03-23 2020-09-29
 France hCoV-19/France/HDF8233/2020
 ATTAAAGGTTTATACCTTCC1- C28T C241T C2416T C3037T C14408T A23403G G25563T T28105C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_568681
 2020-03-23 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1583/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C27619T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

MT345816
 2020-03-23 2020-04-14
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-2139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T T3312C C14408T A23403G G25563T AAAAAAA29897-

MT380734
 2020-03-23 2020-04-24
 United States SARS-CoV-2/human/USA/LA-CDC-1894/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T G29543T AAAAAAAAAAAAAAAAAAAAA29883-

MT459840
 2020-03-23 2020-05-11
 Greece SARS-CoV-2/human/GRC/38_36178/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G5230T C14408T A20268G A23403G G28975T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459842
 2020-03-23 2020-05-11
 Greece SARS-CoV-2/human/GRC/44_36073/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459843
 2020-03-23 2020-05-11
 Greece SARS-CoV-2/human/GRC/46_36230/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459844
 2020-03-23 2020-05-11
 Greece SARS-CoV-2/human/GRC/47_36060/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T G18907T C20402T G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT477842
 2020-03-23 2020-05-14
 United States SARS-CoV-2/human/USA/AK034/2020
 ATTAAAG1- C241T C1059T C3037T C14408T G15760A A23403G G25563T G26062T

MT477845
 2020-03-23 2020-05-14
 United States SARS-CoV-2/human/USA/AK041/2020
 ATTAAAGGTTTATA1- C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT509493
 2020-03-23 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17808T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT627930
 2020-03-23 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S602/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T A23403G C24099T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT671811
 2020-03-23 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1755/2020
 ATTAAAGGTTTATACC1- GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

MT671824
 2020-03-23 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1770/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT675289
 2020-03-23 2020-06-26
 United States SARS-CoV-2/human/USA/COVID19-AK141/2020
 ATTAAAGGTTTATACCTTCC1- A4236G G11083T C14805T C18032A T25655C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT675517
 2020-03-23 2020-06-26
 United States SARS-CoV-2/human/USA/COVID19-AK142/2020
 ATT1- C241T T833C C1059T C3037T C14408T G15913T A23403G G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT706146
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T C25046T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706154
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706176
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8818T A10995G G29711T T29804C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706179
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706182
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706200
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3429T C14408T A20268G A21137G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706314
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706315
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706317
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706318
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C21110T A23403G G25563T C27964T C28846T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706319
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A A10070C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706320
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706321
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706335
 2020-03-23 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A G11083T G23518A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810519
 2020-03-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1649-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C27630T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810835
 2020-03-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1461-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810922
 2020-03-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0184-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G C24064T G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810928
 2020-03-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0193-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A17615G A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810973
 2020-03-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0347-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

NMDC60013223
 2020-03-23 2020-06-01
 China hCoV-19/Guangzhou/ID057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C5654T C14408T G16846T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

NMDC60013262
 2020-03-23 2020-06-01
 China hCoV-19/Guangzhou/ID026/2020
 C6312A G11083T C13730T C23929T C28311T TG29867-A

EPI_ISL_418302
 2020-03-24 2020-03-24
 United Kingdom hCoV-19/England/SHEF-BFE9D/2020
 G11083T C20270T A29683T

EPI_ISL_418304
 2020-03-24 2020-03-24
 United Kingdom hCoV-19/England/SHEF-BFEBB/2020
 C11747T T24364G G29032A

EPI_ISL_418307
 2020-03-24 2020-03-24
 United Kingdom hCoV-19/England/SHEF-BFF03/2020
 A12556G C20270T T22391C A29683T

EPI_ISL_418313
 2020-03-24 2020-03-24
 United Kingdom hCoV-19/England/SHEF-BFF6D/2020
 C241T C3037T C14408T C15952T A23403G

EPI_ISL_418861 MT359866
 2020-03-24 2020-03-31
 Spain SARS-CoV-2/human/ESP/VH198152683/2020
 ATTAAAGGTT1- C241T C313T C3037T C14408T A23403G A27302G GGG28881AAC

EPI_ISL_418891 MT263404
 2020-03-24 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A4236G G11083T C14805T T25655C G26144T AAAAAA29898-

EPI_ISL_419259
 2020-03-24 2020-04-01
 Belgium hCoV-19/Belgium/UGent-11/2020
 T514C ATG1605- C17410T T18723C

EPI_ISL_419265
 2020-03-24 2020-04-01
 Belgium hCoV-19/Belgium/UGent-6/2020
 C241T C3037T A13947T C14408T A23403G GGG28881AAC

EPI_ISL_419266
 2020-03-24 2020-04-01
 Belgium hCoV-19/Belgium/UGent-4/2020
 C241T C3037T C14408T C19269T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_419674
 2020-03-24 2020-04-03
 Austria hCoV-19/Austria/CeMM0021/2020
 C241T C1059T C3037T C14408T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_420004 MT451205
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G660K G1018K C1076T G1397A G2036K C3551Y G5378K G5399T G5425K C5427Y G7017K G8790K G9141K G9249K G10986K G11083T G11535K G12041K G14277K G16068K G16508K G24933K C27964T T28688C G29742T

EPI_ISL_420005 MT451206
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC314/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A404W C1076T G1397A G11083T C27964T G29737C

EPI_ISL_420006 MT451207
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC315/2020
 A1- C241T C3037T C14408T C16848T A23403G GGG28881AAC C29837T A29865R

EPI_ISL_420007 MT451208
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G374A C8782T C17747T A17858G C18060T T28144C C29353T

EPI_ISL_420008 MT451209
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC317/2020
 ATTA1- G374A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_420009 MT451210
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC318/2020
 AT1- C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_420010 MT451211
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC319/2020
 A1- C241T C3037T T7438C C14408T A23403G A26864G C29353T

EPI_ISL_420011 MT451212
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC320/2020
 ATTA1- C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_420012 MT451213
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC321/2020
 ATTAA1- C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_420013 MT451214
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC322/2020
 ATTA1- T380K A1515G T6079C C9223T G11083T A14224G C14805T T17247C G26144T

EPI_ISL_420014 MT451215
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC323/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T T7438C C14408T A23403G A26864R C29353T

EPI_ISL_420015 MT451216
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T A23403G A25449G GGG28881AAC

EPI_ISL_420016 MT451217
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3096T G11083T G13627T C14805T C15540T G26144T A28338G G29212T

EPI_ISL_420017 MT451218
 2020-03-24 2020-04-03
 Australia SARS-CoV-2/human/AUS/VIC326/2020
 A1- C3096T G11083T G13627T C14805T C15540T G26144T A28338G G29212T

EPI_ISL_420171
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C08B9/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420173
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C08F5/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420252
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C01AF/2020
 C2558T G11083T C14805T A25822G G26144T C29167T

EPI_ISL_420259
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0172/2020
 C6027T G11083T C14805T T18771C G26144T

EPI_ISL_420260
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0181/2020
 C241T C3037T C7504T C14408T A20268G A23403G

EPI_ISL_420262
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0752/2020
 C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T C27513T GGG28881AAC

EPI_ISL_420263
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C04E2/2020
 A2480G C2558T C8078T C8917T G11083T C14805T G26144T

EPI_ISL_420295
 2020-03-24 2020-04-06
 Slovenia hCoV-19/Slovenia/12304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2113T C3037T C14408T TTA21991- A23403G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_420374
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/DV-0324117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G24095T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420375
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/VHV-0324118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420376
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/CF-0324119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420377
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/SEM-0324120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3350G C6145T A11839G C14408T T19839C A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420378
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/MSE-0324121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1912T C25047T C26022T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420381
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/FFJ-0324124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2488T C3037T G11083T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420382
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/UNJP-0324125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A28765G T29244C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420383
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/NJC-0324126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16192T A23403G G25563T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420387
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/MNL-0324130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G5950T G11083T C14805T T17247C G26144T A29598G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420388
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/MSE-0324131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T12244C T13402G C13740T C14408T C16869T A23403G C27263T G27870A TG28026AC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420389
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/GMJ-0324132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420390
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/LV-0324133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420391
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/MS-0324134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4201T C14408T A23403G C26527T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420392
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/DME-0324135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G11083T C14805T T17247C G26144T A29598G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420393
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/VWJM-0324136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420395
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/RS-0324138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C28290T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420399
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/MAC-0324142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G G27112C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420401
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/PM-0324144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C15324T T20295C A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420406
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/BEG-0324149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420407
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/CK-0324150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8394T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420408
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/HCM-0324151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C13536T C14408T G22988A A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420412
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/BJ-0324192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T G2891A C4095T G13413C G13415C C14408T T24171G A28676C G29033T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420417
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/BCM-0324160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1471T C3037T C4320T C14408T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420418
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/NIM-0324161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420420
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/DCB-0324163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24794T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420421
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/ML-0324164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420424
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/CCM-0324167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1142T C3037T C14408T C15324T A23403G C27434T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420425
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/RC-0324168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C2094T C3037T T8022G T9283G C14408T C15654T A21651G T22515C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420426
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/NMA-0324169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420427
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/STM-0324170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420429
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/NKMA-0324172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C8394T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420430
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/QL-0324173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C9170T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420431
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/AGR-0324174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14120T C14408T C15324T C20844A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420433
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/DNS-0324176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T T19697C A23403G G26690T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420434
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/RHA-0324177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7829T C11355T C12085T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420436
 2020-03-24 2020-04-06
 Belgium hCoV-19/Belgium/GLA-0324179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C8394T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420621
 2020-03-24 2020-04-06
 France hCoV-19/France/ARA1307/2020
 C241T C3037T C3170T C14408T A23403G G25563T C26464T C29250T C29732T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_420623
 2020-03-24 2020-04-06
 France hCoV-19/France/ARA13095/2020
 C241T C3037T T4684C C14408T C15324T T16342C C18312T A23403G G28202A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420624
 2020-03-24 2020-04-06
 France hCoV-19/France/ARA13160/2020
 C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420625
 2020-03-24 2020-04-06
 France hCoV-19/France/ARA1322/2020
 C241T C1059T C3037T C3787T C14408T A23403G C25553T G25563T G29751C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_420636
 2020-03-24 2020-04-06
 United Kingdom hCoV-19/England/20136085404/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_420876
 2020-03-24 2020-04-07
 Australia hCoV-19/Australia/VIC-CBA2/2020
 C241T C2416T C3037T G4510T C7765T C14408T G20578T A23403G G25563T G27670T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_420878
 2020-03-24 2020-04-07
 Australia hCoV-19/Australia/QLDID929/2020
 ATTAAA1- A2480G C2558T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_421214
 2020-03-24 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10047/2020
 C241T C3037T C14408T C15277T C15324T G18972T A23403G G25249T C25797T

EPI_ISL_421287
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421290
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G A27338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421293
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G C24310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421298
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421317
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C13019T C16457T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421321
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421322
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421324
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421326
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421329
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421331
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421336
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A263G C1191T C3037T C14408T C20325T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421339
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421343
 2020-03-24 2020-04-07
 United States hCoV-19/USA/WI-UW-84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T T15366C C18481T A23403G G25563T G25687A C29296T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421496
 2020-03-24 2020-04-08
 Portugal hCoV-19/Portugal/PT0093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421497
 2020-03-24 2020-04-08
 Portugal hCoV-19/Portugal/PT0094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421498
 2020-03-24 2020-04-08
 Portugal hCoV-19/Portugal/PT0095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421499
 2020-03-24 2020-04-08
 Portugal hCoV-19/Portugal/PT0096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_421768
 2020-03-24 2020-04-09
 United Kingdom hCoV-19/England/201360017/2020
 C241T C3037T T10738Y C14408T A23403G GGG28881AAC

EPI_ISL_422039
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25779/2020
 G1440A G2891A C25669T G28851T

EPI_ISL_422045
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25AF8/2020
 G11083T C14805T C23707T A25056G G26144T

EPI_ISL_422049
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2575B/2020
 AT1- G1440A G2891A C25669T G28851T

EPI_ISL_422053
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25ABC/2020
 G431A ATG1605- G16396T C20270T C28725T A29088G A29683T

EPI_ISL_422065
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2566D/2020
 C241T C1648T C3037T C14408T A23403G

EPI_ISL_422066
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2573D/2020
 AT1- G1440A G2891A C25669T G28851T

EPI_ISL_422067
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25973/2020
 C241T C3037T C14408T C14741T A23403G

EPI_ISL_422071
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-257B5/2020
 ATTAAAGGTTTATACCTTCCCA1- A7479G C11074T G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_422073
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-260AA/2020
 ATTA1- C241T C3037T T7168C G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_422116
 2020-03-24 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25B04/2020
 ATTAAAGG1- C875T ATG1605- C6255T A20637G

EPI_ISL_422727 LR877817
 2020-03-24 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C14408T C18570T A23403G A24862G C28629T C29253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422728 LR877818
 2020-03-24 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422730 LR877823
 2020-03-24 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422736 LR877975
 2020-03-24 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422747 LR877900
 2020-03-24 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422938 LR877888
 2020-03-24 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422939 LR877889
 2020-03-24 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3047T C8818T C14408T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423042
 2020-03-24 2020-04-12
 Thailand hCoV-19/Thailand/Bangkok-0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916Y C14408T C14786T A23403G G25563T G28857A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_423045
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134000804/2020
 A2480G C2558T G11083T C14805T G26144T T26301C

EPI_ISL_423065
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134004904/2020
 C241T C3037T C14408T G21204T A23403G GGG28881AAC

EPI_ISL_423067
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134005104/2020
 C228T G1397A G9479T A9514G G11083T C26533Y G26720C T28688C T28835C G29742T

EPI_ISL_423072
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134006704/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_423073
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134007004/2020
 C241T C3037T C14408T A23403G C26534Y GGG28881AAC

EPI_ISL_423074
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134007104/2020
 C241T C3037T C14408T A23403G C26534Y GGG28881AAC

EPI_ISL_423076
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134009504/2020
 A2480G C2558T G11083T C14805T G26144T C29675T

EPI_ISL_423081
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/201340120/2020
 A2480G C2558T C11074T G11083T C14805T G26144T G28079T

EPI_ISL_423084
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/201340127/2020
 A2480G C2558T A10828C G11083T C14805T G26144T

EPI_ISL_423086
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134015704/2020
 C241T C1059T C3037T C14408T A23403G G24368T C25156T G25563T

EPI_ISL_423091
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134016802/2020
 A1194R G11083T G12832T C14805T C17004Y T17247C C25214T G26144T

EPI_ISL_423092
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134016902/2020
 C241T G1245A C3037T C14408T G21159A A23403G A23670G GGG28881AAC

EPI_ISL_423102
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134019202/2020
 C241T C3037T C14408T A23403G T23488Y C25350T

EPI_ISL_423110
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134020504/2020
 A2480G C2558T G5665A C6151T G11083T T11748A C14805T G26144T

EPI_ISL_423112
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134021004/2020
 AAGTCATTT686- A4060W G11083T G13627T C14805T C15540T C17550Y G26144T A28338G

EPI_ISL_423113
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134021104/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_423117
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134021804/2020
 C241T C1059T C3037T C14408T A23403G C25214T G25563T

EPI_ISL_423122
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134023104/2020
 G411R A2480G C2558T G11083T C14805T G26144T C26801G

EPI_ISL_423123
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134023204/2020
 G411R A2480G C2558T G11083T C14805T G26144T C26801G

EPI_ISL_423126
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134024104/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_423132
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134025904/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_423148
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134060804/2020
 A2480G C2558T C4827T G11083T C14805T C18508T C18713T G26144T

EPI_ISL_423151
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134064204/2020
 A2480G C2558T C4084T G11083T C14805T G25494T G26144T A26319T

EPI_ISL_423152
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134064904/2020
 A1230G A2480G C2558T A10323G G11083T C14805T C18652T G26144T C27791T C28473Y

EPI_ISL_423154
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134067304/2020
 C241T C3037T C11681T C14408T A23403G C25350T C27005T

EPI_ISL_423158
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134068604/2020
 A2480G C2558T C4827T G11083T C14805T C18508T C18713T G26144T

EPI_ISL_423160
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134068904/2020
 A2480G C2558T G3863A A10323G G11083T C14805T C18652T G26144T T28852C

EPI_ISL_423172
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134078004/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC G28960T

EPI_ISL_423174
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134078404/2020
 A2480G C2558T C7011T C10615Y G11083T G11405A C14805T A19476G G26144T C28076Y C28869T

EPI_ISL_423178
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20134079504/2020
 A2480G C2558T C7011T G11083T G11405A C14805T A19476R G26144T C27769Y C28869T

EPI_ISL_423231
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/201360178/2020
 A2480G C2558T G11083T A11090T C14805T G26144T A28175G C29739T

EPI_ISL_423238
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/201360201/2020
 C241T A2480G C2558T G11083T C14805T C23638T G26144T

EPI_ISL_423241
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/201360206/2020
 C241T C3037T C14408T G21204T A23403G GGG28881AAC

EPI_ISL_423741
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20132021004/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_423771
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20132032504/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423809
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20132081104/2020
 C241T C3037T C14408T A23403G

EPI_ISL_423837
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20132104104/2020
 C241T C3037T C14408T G21204T A23403G GGG28881AAC

EPI_ISL_423845
 2020-03-24 2020-04-12
 United Kingdom hCoV-19/England/20132107704/2020
 A2480G C2558T G11083T C14805T C18979T G26144T

EPI_ISL_424301
 2020-03-24 2020-04-12
 United States hCoV-19/USA/WA-UW-1948/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA GTT669- C884T G1397A G8653T G11083T A19073G G27915T T28688C C29077T G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_424302 MT326056
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1878/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAA29897-

EPI_ISL_424304 MT326058
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1930/2020
 ATTAAAGG1- ATACCTTCCCAGGTAACAAACCAACC12- C241T C1059T G1736A C3037T C14408T C16260T A23403G G25563T C28821A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_424305 MT326059
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCC1- C241T C1059T C3037T C14408T A23403G TTG25532- G25563T G29553A AAAAAAAAAAA29893-

EPI_ISL_424309 MT326063
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A

EPI_ISL_424311 MT326065
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1880/2020
 ATTAAA1- AAC34TTT C241T C1059T C3037T C14408T G19962C A23403G G25563T T28144C C29311T AAAAA29899-

EPI_ISL_424312 MT326066
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C14408T A23403G G25563T G29553A AA29902-

EPI_ISL_424313 MT326067
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C14408T A23403G G25563T G29553A AA29902-

EPI_ISL_424314 MT326068
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C14408T A23403G G25563T C27630T G29553A AAAAAAAA29896-

EPI_ISL_424316 MT326069
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A -29904GANANANANA

EPI_ISL_424317 MT326070
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1928/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_424323 MT326076
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1944/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T C17326T C17747T A17858G A17884G C18060T G19645T T28144C T29758C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424325 MT326078
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C6040T C12242T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_424329 MT326081
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1984/2020
 ATTAAAGGT1- TACCTTCCCAGGTAACAAACCAACC13- C8782T C17747T A17858G C18060T T28144C C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424333 MT326023
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-2006/2020
 ATTAAAGGTTTATA1- AACC34TTTA C241T C1059T C3037T C7164T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_424334 MT326024
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCT1- C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_424335 MT326025
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C1059T C3037T C14408T C16750T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_424337 MT326027
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1977/2020
 ATTAAA1- AACC34TTTH C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_424338 MT326028
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-1986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- G1820A C8782T C17747T A17858G C18060T T28144C C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_424339 MT326029
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-2016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C18176T A23403G G25563T GA29868VT A29903-

EPI_ISL_424340 MT326030
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-2009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_424341 MT326031
 2020-03-24 2020-04-12
 United States SARS-CoV-2/human/USA/WA-UW-2008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTA1- C241T C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C T29194C A29869T -29904A

EPI_ISL_424538
 2020-03-24 2020-04-13
 Iceland hCoV-19/Iceland/516/2020
 

EPI_ISL_425048
 2020-03-24 2020-04-14
 Belgium hCoV-19/Belgium/UGent-1/2020
 T514C ATG1605- G14622T C17410T T18723C

EPI_ISL_425050
 2020-03-24 2020-04-14
 Belgium hCoV-19/Belgium/UGent-2/2020
 C241T C3037T C14408T T17126C A20268G A23403G C28546A

EPI_ISL_425059
 2020-03-24 2020-04-14
 Belgium hCoV-19/Belgium/UGent-19/2020
 T514C ATG1605- C6312T G14622T C17410T T18723C

EPI_ISL_425062
 2020-03-24 2020-04-14
 Belgium hCoV-19/Belgium/UGent-22/2020
 C241T C3037T C14408T A23403G G24794T

EPI_ISL_425063
 2020-03-24 2020-04-14
 Belgium hCoV-19/Belgium/UGent-24/2020
 C241T C3037T C14408T G14580T A23403G

EPI_ISL_425315
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74605/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425575
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E669/2020
 C241T C3037T C9246T G10097A C14408T A23403G C23731T G27378T G28580T GGG28881AAC

EPI_ISL_425576
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E678/2020
 C2558T G11083T C14805T C18501T G26144T

EPI_ISL_425581
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E6C3/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_425584
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E71B/2020
 ATG1605- C6696T C11001T

EPI_ISL_425586
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E739/2020
 A1515G C3619T C9223T G11083T C14805T T17247C G26144T

EPI_ISL_425587
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E748/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_425918
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB150/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_425919
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB151/2020
 C241T C683T C3037T C14408T A20268G G21123T A23403G C28854T

EPI_ISL_425924
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB162/2020
 C241T C1415T C3037T C14408T C22879A A23403G

EPI_ISL_425925
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB168/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_425927
 2020-03-24 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB181/2020
 C241T C3037T C14408T A23403G C25433T C27476T

EPI_ISL_426058 MT345817
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-2134/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA T153G C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAA29893-

EPI_ISL_426084 MT345798
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426087 MT345814
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTA1- C241T C1059T C3037T C14408T C14697T A23403G G25563T G29553A A29903R

EPI_ISL_426089 MT345811
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2108/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T G3259T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426094 MT345815
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2137/2020
 ATTAAAGGTTTATACCT1- AACC34HTTH A187G C241T C1616T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_426106 MT345844
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2180/2020
 AT1- AGGT6- CCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGG15- T150C T153G G237D C241T C3037T G3871T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_426122 MT345846
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2234/2020
 ATTAAAGGTTTATA1- CCCAGG19- CAAACCAACCAA28T G219T C241T C1059T C3037T C14408T A23403G G25563T AAA29901-

EPI_ISL_426123 MT345849
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2235/2020
 ATTAAAGGTTTAT1- A14G CT16TC CAGGTAACAAACCA21T ACC35TTA C241T C1059T C1329T C3037T A6277G G8102T C14408T G14712A C14877T A23403G G25563T AAAAAA29898-

EPI_ISL_426125 MT345848
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2238/2020
 ATTAAAGGTTT1- TT76AC C84G TCT232YMY C241T C1059T C3037T G3410A C14408T A23403G G25563T G29553A AC29869TH AAAA29900-

EPI_ISL_426129 MT345841
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2247/2020
 A1C TAAAGG3- TT9YY AAC34HWY C8782T C17747T A17858G C18060T A27924G T28144C AAAAAAAAAAAAAAA29889-

EPI_ISL_426130 MT345840
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2249/2020
 ATTAAA1- AACC34HTTH C8782T C17747T A17858G C18060T T22516C A27924G T28144C AAAA29900-

EPI_ISL_426131 MT345842
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTC1- C8782T C17747T A17858G C18060T A27924G T28144C A29903-

EPI_ISL_426132 MT345847
 2020-03-24 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C1059T C3037T A10579G C14408T A23403G G25563T AAA29872TTT A29903-

EPI_ISL_426485
 2020-03-24 2020-04-17
 United States hCoV-19/USA/AZ-TG271872/2020
 C241T ATG518- C1059T C3037T C14408T C21648T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426541
 2020-03-24 2020-04-17
 United States hCoV-19/USA/AZ-TG271870/2020
 C241T C1059T C3037T C14408T C21648T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426543
 2020-03-24 2020-04-17
 United States hCoV-19/USA/AZ-TG271880/2020
 C241T C1059T C3037T C14408T C17825T A23403G G25563T G25767C C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426697 MT451278
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C3373A C11195T C14408T A17940T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_426698 MT451279
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC395/2020
 ATT1- C241T C1059T T2561C C3037T G3564T C11916T C14408T C19018T A23403G G24933T G25563T

EPI_ISL_426699 MT641666
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC396/2020
 ATTA1- ATG1605- G3564T C5007T C6852T G8790T C8917T G13571K C17898T G24933T

EPI_ISL_426701 MT451281
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC398/2020
 ATTA1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_426702 MT451282
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3564T C14408T C15324T A23403G G24933T C25710T

EPI_ISL_426703 MT641667
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC400/2020
 C241T C3037T G3564T G8790K G13571T C14408T A23403G G24933T C27046T G28557T GGG28881AAC C29666T

EPI_ISL_426705 MT451283
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC402/2020
 ATTA1- C241T G660K C1059T C3037T G3564T G8790T G11535T G13571T G14277T C14408T A23403G G24933T G25563T C29364T

EPI_ISL_426707 MT451284
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC404/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A23403G G27358T GGG28881AAC

EPI_ISL_426745 MT451317
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC449/2020
 C241T C3037T C14408T C15324T G15982T A23403G G28233T

EPI_ISL_426772 MT451355
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC500/2020
 C241T C3037T G11534A C14408T A23403G G27703T GGG28881AAC

EPI_ISL_426793 MT451361
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC527/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_426797 MT451365
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC531/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_426802 MT451369
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC536/2020
 C241T C3037T G3564T C14408T C22446Y A23403G G24933T A26530G

EPI_ISL_426805 MT641689
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC540/2020
 C241T C1059T C3037T G3564T C14408T C21648T A23403G C23673T G24933T G25563T C26176T

EPI_ISL_426806 MT451371
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC541/2020
 C241T C3037T G3564T C14408T C15324T A23403G

EPI_ISL_426824 MT451388
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC563/2020
 C241T C3037T T7438C C14408T A23403G A26864G C29353T

EPI_ISL_426881 MT451630
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC912/2020
 C241T C3037T T7438C C14408T A23403G A26864G C29353T

EPI_ISL_426904 MT641661
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/NT17/2020
 C241T C3037T C14408T A23403G A24862G

EPI_ISL_426942 MT451448
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC646/2020
 T490A C3177T C6285T C8782T C15960T T18736C G19684T C24034T C27635T G28077C T28144C A29700G

EPI_ISL_427081 MT451569
 2020-03-24 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC807/2020
 C241T C2416T C3037T G4510T C7765T C14408T G20578T A23403G G25563T G27670T

EPI_ISL_427308
 2020-03-24 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4307V/2020
 C241T C3037T C14408T G14593A A23403G A27426G GGG28881AAC

EPI_ISL_427309
 2020-03-24 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4308V/2020
 C241T C3037T C14408T G14593A A23403G A27426G GGG28881AAC

EPI_ISL_427397
 2020-03-24 2020-04-18
 Taiwan hCoV-19/Taiwan/TSGH-10/2020
 T2G A5C GT8A A12G C15T -18CGATGCTTATAACATGATGATCTCAGCTGGCTTTAGCTTGTGGGTTTACAAACAATTTGA A2480G C2558T G11083T C14805T G26144T -29904TAAACAAAAAAAAAAAAAAAATTTTAAAAAAAAAAAAAAAATTAAAATAAAACAAAGAATTTTT

EPI_ISL_427622
 2020-03-24 2020-04-19
 United States hCoV-19/USA/AK-PHL118/2020
 ATTAAAGGTTTAT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_428231
 2020-03-24 2020-04-20
 Taiwan hCoV-19/Taiwan/TSGH-14/2020
 C241T C3037T G7017T C14408T C14675G A18794T C18877T A23403G G25563T

EPI_ISL_428290
 2020-03-24 2020-04-20
 United States hCoV-19/USA/WI-UW-194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428291
 2020-03-24 2020-04-20
 United States hCoV-19/USA/WI-UW-195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G A23592G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428293
 2020-03-24 2020-04-20
 United States hCoV-19/USA/WI-UW-197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428294
 2020-03-24 2020-04-20
 United States hCoV-19/USA/WI-UW-198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25793T T27299C GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428295
 2020-03-24 2020-04-20
 United States hCoV-19/USA/WI-UW-199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3736T C8655T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428296
 2020-03-24 2020-04-20
 United States hCoV-19/USA/WI-UW-200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428306
 2020-03-24 2020-04-20
 United States hCoV-19/USA/WI-UW-210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T21024C G29711T A29725G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428350
 2020-03-24 2020-04-20
 France hCoV-19/France/HF3419/2020
 C241T C1059T C3037T C14408T C14925T C16045T C18167T A23403G C23589T C25047T G25563T G28817A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_428351
 2020-03-24 2020-04-20
 France hCoV-19/France/IDF3509/2020
 C241T C1059T C3037T C10582T C14408T A23403G C23707T G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_428353
 2020-03-24 2020-04-20
 France hCoV-19/France/HF3534/2020
 C241T C2416T C3037T T12722C C14408T A23403G G25563T C27925T G28925T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_428358
 2020-03-24 2020-04-20
 France hCoV-19/France/HF3598/2020
 C241T C2416T C3037T C7224T C9430T C14408T G16846T G22014T A23403G G25563T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_428726
 2020-03-24 2020-04-21
 United States hCoV-19/USA/WI-UW-252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428895
 2020-03-24 2020-04-22
 Russia hCoV-19/Russia/Perm-82707/2020
 C241T A2497G C3037T C11919T C14408T A23403G GGG28881AAC

EPI_ISL_428897
 2020-03-24 2020-04-22
 Russia hCoV-19/Russia/StPetersburg-82005/2020
 G2286A C5907T G11083T C14805T G26144T G28842T

EPI_ISL_428917
 2020-03-24 2020-04-22
 Russia hCoV-19/Russia/Tatarstan-82208/2020
 C48A C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429134
 2020-03-24 2020-04-23
 Sweden hCoV-19/Sweden/20-08693/2020
 C241T C1059T C1302T C3037T C14408T C15895T C21364T A23403G G25563T T25885G

EPI_ISL_429211
 2020-03-24 2020-04-23
 Switzerland hCoV-19/Switzerland/GE5708/2020
 ATT1- C241T C3037T C4551T C14408T C15324T A23403G

EPI_ISL_429212
 2020-03-24 2020-04-23
 Switzerland hCoV-19/Switzerland/GE0056/2020
 ATTAAAG1- C241T C3037T C14408T C15324T A23403G

EPI_ISL_429231
 2020-03-24 2020-04-23
 Italy hCoV-19/Italy/TE6571/2020
 A39G T42C C44A C48A C241T A639R C3037T G3056R A3341R C3737Y T4902W C5621Y C6021S TG8827WK A9397R T11134Y TT12827YY C14408T T14830Y A17346M T18936W T19491Y C19495Y T22045Y C22730M G22854R A23403G C23520Y A24440R TC26532WY GGG28881AAC AA29902-

EPI_ISL_429232
 2020-03-24 2020-04-23
 Italy hCoV-19/Italy/TE6572/2020
 A39G TTC42CYA C48A A55R C241T C3037T C4668M C14408T A23403G GGG28881AAC

EPI_ISL_429469
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI358/2020
 C241T C1059T T2572C C3037T C14408T G22801T A23403G G25563T

EPI_ISL_429483
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI383/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429484
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI384/2020
 C241T C3037T G10265A C14408T A23403G GGG28881AAC

EPI_ISL_429485
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI385/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429486
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI390/2020
 C241T C3037T C14408T C15857T A23403G GGG28881AAC C29296T

EPI_ISL_429488
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI393/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429489
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI394/2020
 C241T C1059T C1302T C3037T C7029T C14408T A23403G G25563T

EPI_ISL_429524
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI425A/2020
 C241T C3037T C7834T C14408T G15243T A23403G

EPI_ISL_429526
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI430/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429527
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI431/2020
 C241T C1059T C1093T C1302T C3037T C14408T A23403G G25563T G28487A

EPI_ISL_429528
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI432/2020
 C241T C1059T C3037T C12781T C14408T C15842A A23403G A23975G G25563T

EPI_ISL_429529
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI434/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429537
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI450/2020
 C241T G611A C3037T C14408T A23403G

EPI_ISL_429565
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI488/2020
 C241T C1059T C3037T T8788C C14408T G19199A A23403G G25563T G26951A

EPI_ISL_429569
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI494/2020
 C241T C1059T C3037T C3966T C14408T A23403G G25563T

EPI_ISL_429570
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI495/2020
 C241T C1059T C3037T T8788C C14408T A23403G A23796G G25563T G26951A

EPI_ISL_429572
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI501/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429581
 2020-03-24 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI513/2020
 C241T C1059T C3037T T4630C C14408T G19086T A23403G G25563T

EPI_ISL_429758
 2020-03-24 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS8167314/2020
 G23A C241T C3037T C3261T C14408T A23403G T24151C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_429759
 2020-03-24 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS9455951/2020
 C241T C3037T G4255T C14408T A23403G A26530G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_429777
 2020-03-24 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS0994857/2020
 C241T C313T C2980T C3037T A3076T C14408T A23403G GGG28881AAC C29249T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_429991 MT598174
 2020-03-24 2020-04-24
 United States SARS-CoV-2/human/USA/SEARCH-0017-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430015 MT811565
 2020-03-24 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0057-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2048T T7270C G11083T C14805T G26144T G28842T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430016 MT598173
 2020-03-24 2020-04-24
 United States SARS-CoV-2/human/USA/SEARCH-0016-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- ATG1605- A21137G G26266A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_431017
 2020-03-24 2020-04-29
 United States hCoV-19/USA/AK-PHL040/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C3293T C14408T A21825C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_432183
 2020-03-24 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-25366/2020
 ATTA1- C241T A2869G C3037T C14408T A23403G GGG28881AAC C29095T

EPI_ISL_433074
 2020-03-24 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB153/2020
 C241T C1059T C3037T G13445T C14408T A23403G G25563T C29311T

EPI_ISL_433305
 2020-03-24 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433307
 2020-03-24 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A10770G C12710T C25466T T27761C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433308
 2020-03-24 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2196C G11083T C14805T C17172A T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434262 MT632826
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S502/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434271 MT632835
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S511/2020
 C241T C379A C1059T T2244C C3037T C14408T C16859T A23403G G25563T

EPI_ISL_434277 MT632791
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S517/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434289 MT632820
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S529/2020
 G6530A C8782T A11595G C16163T C17747T A17858G C18060T T23010C T28144C

EPI_ISL_434291 MT632929
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S531/2020
 C241T C1059T C3037T C7164T C14408T A23403G G25563T G29553A

EPI_ISL_434296 MT632831
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S536/2020
 C241T C379A C1059T T2244C C3037T C14408T G21123T A23403G G25563T

EPI_ISL_434300 MT632816
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S540/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434301 MT632912
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S541/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_434303 MT632799
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S543/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T C29253T

EPI_ISL_434307 MT632878
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S547/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434310 MT632780
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S550/2020
 C241T C1059T C3037T A3421G G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434311 MT632814
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S551/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434320 MT632808
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S560/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434322 MT632844
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S562/2020
 C241T C379A C1059T C3037T G6036A C14408T C17949T A23403G G25563T

EPI_ISL_434324 MT632854
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S564/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434330 MT632935
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S570/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_434339 MT633001
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S579/2020
 C8782T C17747T A17858G C18060T T28144C C28311T

EPI_ISL_434343 MT632943
 2020-03-24 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S583/2020
 A3492C C8782T A14199G C17747T A17858G C18060T T28144C

EPI_ISL_434546 MT419815
 2020-03-24 2020-04-29
 United States SARS-CoV2/human/USA/PR-CDC-S6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C3037T C14408T A23403G GGG28881AAC AAAA29900-

EPI_ISL_434547 MT419816
 2020-03-24 2020-04-29
 United States SARS-CoV2/human/USA/PR-CDC-S7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- A8728G C8782T G17280T C17747T A17858G C18060T A24694T G25687T A25806T T28144C AAAA29900-

EPI_ISL_434551 MT419820
 2020-03-24 2020-04-29
 United States SARS-CoV2/human/USA/PR-CDC-S11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C1059T A1632T C3037T C14408T A23403G G25563T AAAA29900-

EPI_ISL_434587
 2020-03-24 2020-04-30
 United States hCoV-19/USA/MD-HP00037/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T

EPI_ISL_434640
 2020-03-24 2020-04-30
 United States hCoV-19/USA/MD-HP00044/2020
 C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC

EPI_ISL_434653
 2020-03-24 2020-04-30
 Sweden hCoV-19/Sweden/20-06376/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29705T

EPI_ISL_434873
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH198/2020
 T490A C3177T C6040T C7334T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_434876
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH201/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_434877
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH202/2020
 C241T C2388T C3037T C14408T A23403G C23707T C29441G

EPI_ISL_434878
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH203/2020
 C241T C3037T C14408T G15243T G17252T A23403G

EPI_ISL_434879
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH204/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434881
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH206/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434882
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH207/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434883
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH208/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434884
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH209/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434885
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH210/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C25904T C27964T

EPI_ISL_434887
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH212/2020
 T490A C3177T C7124T C8782T C9561T T18736C C24034T C25433T T26729C C26895T G28077C T28144C A29700G

EPI_ISL_434888
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH213/2020
 C241T C1059T C3037T C14408T G15638A A15640T A23403G G25563T C27964T

EPI_ISL_434889
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH214/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_434891
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH234/2020
 T490A C3177T C6040T C8782T C8950T A9244G G12478A T18736C C24034T C26447T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434960
 2020-03-24 2020-05-01
 United States hCoV-19/USA/TX-HMH369/2020
 C241T C3037T C14408T A23403G

EPI_ISL_435145
 2020-03-24 2020-05-03
 Italy hCoV-19/Italy/TE6644/2020
 C241T C3037T A6866W A6869T C7224T C14408T C18167T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_436103
 2020-03-24 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-18/2020
 A1G -5CGGCGCCGATCTAAAGTCATTTGACTTAGGCGACGAGCTTGGCACTGATCCTTATGAAGATT C241T C2416T C3037T C14408T A23403G T25514C G25563T

EPI_ISL_436287
 2020-03-24 2020-05-06
 Spain hCoV-19/Spain/Valencia192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436478
 2020-03-24 2020-05-06
 United States hCoV-19/USA/PA-MGSC25-05/2020
 C241T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436495
 2020-03-24 2020-05-06
 United States hCoV-19/USA/PA-MGSC47-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436501
 2020-03-24 2020-05-06
 United States hCoV-19/USA/PA-MGSC53-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T C28836T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436627 MT706439
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A994G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436628 MT706440
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A994G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436629 MT706441
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G25660T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436847 MT439293
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20116/2020
 ATTAAAGGTTTATACCTTCC1- G713S C8782T C17010T C17747Y A17858G C18060T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436850 MT439284
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T G16381A T17877C C22323Y G25500T C25854T T28144C G28878A G29742A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436852 MT439279
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436853 MT439283
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20138/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_436854 MT439297
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1059T C3037T T6905G C14408T A23403G G25563T T29678Y ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_436855 MT439296
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436856 MT439273
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C26313T C28863T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_436859 MT439287
 2020-03-24 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20180/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436995
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-613/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_436996
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-614/2020
 C241T C1059T C1889T C3037T C14408T A23403G G25563T

EPI_ISL_436997
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-615/2020
 C241T C1059T C3037T C3393T A6058G G9176A G11083T C14408T G17427T C20016T A23403G G25563T

EPI_ISL_437001
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-620/2020
 C241T C3037T G10265A G12514T C14408T A15972G C19718T A23403G T28759C GGG28881AAC

EPI_ISL_437003
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-623/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437004
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-624/2020
 C241T C1059T C3037T C14408T G19086T A23403G G25563T

EPI_ISL_437006
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-626/2020
 C241T C1059T C3037T T6469C T8788C C14408T A23403G G25563T G26951A

EPI_ISL_437007
 2020-03-24 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-628/2020
 C241T C1059T C3037T G10465A C14408T C21742T A23403G G25563T

EPI_ISL_437090
 2020-03-24 2020-05-08
 Latvia hCoV-19/Latvia/011/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437197
 2020-03-24 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG1/2020
 C241T C14408T A23403G

EPI_ISL_437263
 2020-03-24 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0064/2020
 C241T C3037T C14408T G19825T A23403G A28855G GGG28881AAC

EPI_ISL_437334
 2020-03-24 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-10232/2020
 ATTAAA1- C228T G1397A C3903T A9514G G11083T A13376G C13476T C19484T C26549Y G26720C T28688C T28835C G29742T AAAAAAAAAA29894-

EPI_ISL_437516
 2020-03-24 2020-05-11
 United States hCoV-19/USA/AK-PHL122/2020
 ATTAAAGGTTTATACCTTCC1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C28606T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_437564
 2020-03-24 2020-05-11
 United States hCoV-19/USA/CA-SR0245/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437566
 2020-03-24 2020-05-11
 United States hCoV-19/USA/CA-SR0240/2020
 C241T C1059T C3037T G10533A C14408T C16289T C16762T A23403G G25563T C29460A

EPI_ISL_437586
 2020-03-24 2020-05-11
 United States hCoV-19/USA/CA-SR0197/2020
 C241T C1059T C3037T A4198T C14408T T19791C A23403G G25563T C25710T

EPI_ISL_437589
 2020-03-24 2020-05-11
 United States hCoV-19/USA/CA-SR0192/2020
 C241T C1059T C3037T C14408T C16762T A23403G G25563T C29870A

EPI_ISL_437596
 2020-03-24 2020-05-11
 United States hCoV-19/USA/CA-SR0181/2020
 C241T C3037T C14408T A23403G C23595T C29870A

EPI_ISL_437626 MT457402
 2020-03-24 2020-05-11
 India SARS-CoV-2/human/IND/GMC-KP1125/2020
 C241T C3037T C14408T C18877T T19538Y A23403G G25563T G29868R C29870A

EPI_ISL_437946
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0078/2020
 C241T C3037T C3373A G11516A C14408T T22521K A23403G G25269T GGG28881AAC T29772C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437947
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0080/2020
 T514C G1806R A2661W C12488Y C15341Y T22521K G26109T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437948
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0083/2020
 C241T C3037T C14408T C18526T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437949
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0084/2020
 C241T C1059T C3037T C14408T T22521K A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_437950
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0086/2020
 C241T C3037T C14408T T22521K A23403G C23802Y C24715T C27630T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437951
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0088/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27020G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_437952
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0089/2020
 C241T C3037T C14408T T22521K A23403G GGG28881AAC G29540T A29865R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438095
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0266/2020
 G1440A G2891A C7011T T22521K G25593C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438096
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0267/2020
 C241T C3037T C14408T T22521K A23403G A24862G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438097
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0269/2020
 C241T C3037T C14408T A20268G T22521K A23403G C24333Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438098
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0271/2020
 C241T C2509T C3037T C14408T T22521K A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438099
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0272/2020
 C241T C3037T G4510T C12073T C14408T T22521K A23403G C24642T C27046T G28395T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438100
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0273/2020
 C241T C3037T C14408T T22521K A23403G C27046T GGG28881AAC G29543K ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_438101
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0274/2020
 C241T C1059T C3037T C3261A C12525T C14408T T22521K A23403G G25563T G29422T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438102
 2020-03-24 2020-05-12
 Austria hCoV-19/Austria/CeMM0275/2020
 C241T C3037T C14408T T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_441416
 2020-03-24 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB3B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C988T G11083T C14805T T17247C G26144T C29870A

EPI_ISL_441427
 2020-03-24 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB475/2020
 ATTA1- C241T C1420T C3037T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_441984
 2020-03-24 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C5F19/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_443271
 2020-03-24 2020-05-12
 France hCoV-19/France/B5355/2020
 C241T C3037T C14408T G20024T A23403G C27923T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_443272
 2020-03-24 2020-05-12
 France hCoV-19/France/B5359/2020
 C241T C690T C1059T C3037T T13006C C14408T A23403G G25563T C25688T G28378T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_443273
 2020-03-24 2020-05-12
 France hCoV-19/France/B5363/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T G28378T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_443312
 2020-03-24 2020-05-12
 France hCoV-19/France/CVL4430/2020
 C241T C1059T C3037T G8179T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_444793
 2020-03-24 2020-05-14
 Australia hCoV-19/Australia/QLDID939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T G19599T A23403G G25563T CAT27294- C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_444999
 2020-03-24 2020-05-14
 United States hCoV-19/Guam/GU_NHG_02/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_445082
 2020-03-24 2020-05-14
 United States hCoV-19/USA/TX_GCID_192000119/2020
 ATTAAAGGTTTA1- C8782T A15246G C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_445083
 2020-03-24 2020-05-14
 United States hCoV-19/USA/TX_GCID_192000124/2020
 ATTAAAGG1- TT9CC CCTT15- C241T C1059T C3037T C9166T G12521A C14408T A23403G G25563T C27964T T29867A ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_445105
 2020-03-24 2020-05-15
 United States hCoV-19/USA/CA-SR0111/2020
 C241T C1059T C3037T C7945T CC14407TT C17850T A23403G G25563T

EPI_ISL_447134
 2020-03-24 2020-05-16
 Belgium hCoV-19/Belgium/ULG-0544/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T C21575T A23403G G25563T

EPI_ISL_447135
 2020-03-24 2020-05-16
 Belgium hCoV-19/Belgium/ULG-0546/2020
 C241T C2113T C3037T C7765T C10369T C14408T C17690T C18877T A23403G G25563T C26042T

EPI_ISL_447136
 2020-03-24 2020-05-16
 Belgium hCoV-19/Belgium/ULG-7921/2020
 C241T C3037T C14408T C15324T G21793T A23403G G28690T

EPI_ISL_447209 MT506683
 2020-03-24 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20239/2020
 C241T C1059T C3037T C14408T C18795T A23403G G25563T G28392K

EPI_ISL_447211 MT506687
 2020-03-24 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20241/2020
 C241T C1059T C3037T C14408T C17550T A23403G G25563T

EPI_ISL_447296
 2020-03-24 2020-05-17
 Israel hCoV-19/Israel/701002462/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447297
 2020-03-24 2020-05-17
 Israel hCoV-19/Israel/701002458/2020
 C241T C1059T C3037T C14408T C20091T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447299
 2020-03-24 2020-05-17
 Israel hCoV-19/Israel/701002455/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAA29892-

EPI_ISL_447300
 2020-03-24 2020-05-17
 Israel hCoV-19/Israel/701002442/2020
 C241T C3037T G9692A C14408T C18877T A23403G G25563T G29688T AAAAAAAAAAAA29892-

EPI_ISL_447301
 2020-03-24 2020-05-17
 Israel hCoV-19/Israel/701002440/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447302
 2020-03-24 2020-05-17
 Israel hCoV-19/Israel/701002431/2020
 C241T C313T C3037T C14408T G14874T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447303
 2020-03-24 2020-05-17
 Israel hCoV-19/Israel/701002426/2020
 C241T C1059T C3037T C14408T G19429T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447594
 2020-03-24 2020-05-18
 Australia hCoV-19/Australia/QLDID941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T A23403G GGG28881AAC G29540T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_447595
 2020-03-24 2020-05-18
 Australia hCoV-19/Australia/QLDID942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C8626T C14408T A23403G C27046T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_447832 MT459832
 2020-03-24 2020-05-11
 Greece SARS-CoV-2/human/GRC/34_36284/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_448817
 2020-03-24 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF188/2020
 G600A G1820A A2480G C2558T T8599C G11083T C14805T G26144T

EPI_ISL_448820
 2020-03-24 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF249/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC

EPI_ISL_448822
 2020-03-24 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF2A3/2020
 G600A G1820A A2480G C2558T T8599C G11083T C14805T G26144T

EPI_ISL_450026
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T G5554A C14408T A23403G C25463T G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450027
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C14408T A23403G G25563T G26746T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_450028
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11224T C11900T C14408T A23403G G25563T C29546T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450029
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450030
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T G29540A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450031
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T C21145T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450032
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450033
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C1170T C3037T C14408T A23403G G25563T GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_450034
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_450035
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450036
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450037
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T G2672T C3037T C14408T C18877T C22000T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450038
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T C21575T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_450039
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G A23796G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450040
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C6664A G7675T C10851T C14408T A17697T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_450041
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C14408T A23403G TACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29760-

EPI_ISL_450042
 2020-03-24 2020-05-19
 United States hCoV-19/USA/NY-PV09354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C1387T C3037T C14408T A20755C A23403G G25563T AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_450348
 2020-03-24 2020-05-20
 Norway hCoV-19/Norway/Trondheim-S10/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T A6400G C14408T A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_450453 MT499179
 2020-03-24 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1204/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C7528T C14408T A23403G G25563T

EPI_ISL_450454 MT499180
 2020-03-24 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1205/2020
 C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC

EPI_ISL_450460 MT499186
 2020-03-24 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1211/2020
 ATTA1- C900T G11083T C14805T T17247C C21575T G26144T

EPI_ISL_450484 MT394528
 2020-03-24 2020-04-27
 United States SARS-CoV-2/human/USA/CA-CZB-59X002/2020
 ATTAAAG1- C9924T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_450485 MT394529
 2020-03-24 2020-04-27
 United States SARS-CoV-2/human/USA/CA-CZB-59X001/2020
 ATTAAAGGTTT1- C9924T C23816Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_450616 MT509683
 2020-03-24 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20337/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451137
 2020-03-24 2020-05-23
 Australia hCoV-19/Australia/SAP130/2020
 ATTAAAGGTTTA1- G374A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_451140
 2020-03-24 2020-05-23
 Australia hCoV-19/Australia/SAP136/2020
 ATTAAAGG1- C4540T C8782T T9477A C14805T G23120T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_452183
 2020-03-24 2020-05-27
 Italy hCoV-19/Italy/VR_20COV17-11/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452184
 2020-03-24 2020-05-27
 Italy hCoV-19/Italy/VR_20COV18-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C48A C98T C241T C3037T C14408T A23403G TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452272
 2020-03-24 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20398/2020
 C241T C1059T C3037T C14408T G22094R A23403G G25563T

EPI_ISL_452274
 2020-03-24 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20400/2020
 C241T C1059T C3037T C14408T C23277T A23403G G25563T

EPI_ISL_452337
 2020-03-24 2020-05-27
 China hCoV-19/Beijing/DT-travelFR02/2020
 C241T C3037T C10619A A11862G A23403G G28881A

EPI_ISL_452556
 2020-03-24 2020-05-27
 Spain hCoV-19/Spain/COV001217/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_452557
 2020-03-24 2020-05-27
 Spain hCoV-19/Spain/COV001216/2020
 C8782T T9477A C14805T G25979T G28109T T28144C C28657T C28863T

EPI_ISL_452561
 2020-03-24 2020-05-27
 Spain hCoV-19/Spain/COV001209/2020
 C8782T T9477A G10787T C14805T C22227T G25979T T28144C C28657T C28863T

EPI_ISL_453467
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101E31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C20436T A23403G GGG28881AAC

EPI_ISL_453468
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101E40/2020
 A1- C241T C3037T C14408T T17126C A20268G G20274T A23403G G24197A

EPI_ISL_453469
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101E6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A1515G C9223T G11083T G11464A C14805T T17247C G26144T

EPI_ISL_453470
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101E7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C10078T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_453471
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101E8C/2020
 ATTA1- C241T G2177R C3037T C14408T A23403G GGG28881AAC

EPI_ISL_453473
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101EAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G713T C3037T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_453475
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101EC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C19118T A23403G C27046T GGG28881AAC

EPI_ISL_453476
 2020-03-24 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101ED7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_453813
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G C26873T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453814
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T G11083T T14394C C14408T G16852T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453817
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453865
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C5348T C11824T C14097T C14408T A23403G G25563T C28528T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454142
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15925T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454300
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C18175T A20268G A23403G C25658T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454301
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18175T A20268G A23403G C25658T G29751T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454302
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18175T A20268G A23403G C25658T G26918A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454343
 2020-03-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3045T C3140T C9665T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454534
 2020-03-24 2020-05-28
 India hCoV-19/India/NIV-4622/2020
 C8782T C17440T G19816T G22468T T28144C G28878A CAAT29675AGCC G29688A C29696A GG29794AC

EPI_ISL_454609 MT533206
 2020-03-24 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C2511Y G3521K G3638R C12403T G16822S C23799Y C27874T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_454769
 2020-03-24 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10020/2020
 ATTAAA1- C241T C3037T C14408T C19170T G19509A A23403G C26313T GGG28881AAC AAAAAA29898-

EPI_ISL_454790
 2020-03-24 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10041/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T A23403G A24862G C26801T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_454948
 2020-03-24 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-194/2020
 T383C C14554T C17690T

EPI_ISL_455215
 2020-03-24 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C25578T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455216
 2020-03-24 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20031A A23403G C27046T GGG28881AAC G29706T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455257
 2020-03-24 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455688 MT407654
 2020-03-24 2020-04-27
 China SARS-CoV-2/human/CHN/OS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- G11083T G26144T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_455689 MT407655
 2020-03-24 2020-04-27
 China SARS-CoV-2/human/CHN/OS5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- A2480G C2558T G11083T C14805T G26144T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_455690 MT407656
 2020-03-24 2020-04-27
 China SARS-CoV-2/human/CHN/OS6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T C14980T T16413C A20268G A23403G A29874C AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_455691 MT407657
 2020-03-24 2020-04-27
 China SARS-CoV-2/human/CHN/OS3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T A4297G C14408T A20268G A23403G G29734C GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_455692 MT407658
 2020-03-24 2020-04-27
 China SARS-CoV-2/human/CHN/OS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C8782T T28144C ATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29819-

EPI_ISL_455693 MT407659
 2020-03-24 2020-04-27
 China SARS-CoV-2/human/CHN/OS4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CA29870TG AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_456217
 2020-03-24 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1450/2020
 C241T C1059T A2439G C3037T C14408T A23403G G25563T C26625T

EPI_ISL_456222
 2020-03-24 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1561/2020
 C241T C2416T C3037T C4755T C14408T A21801C A23403G G25563T

EPI_ISL_456223
 2020-03-24 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1581/2020
 C241T C3037T C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_456224
 2020-03-24 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1597/2020
 G1085T T1368C C6990T G11083T C14805T C20736T G26144T

EPI_ISL_456233
 2020-03-24 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1623/2020
 A2568T C3096T G11083T C12781T G13627T C14805T C15540T G17944T C26013T G26144T A28338G

EPI_ISL_456238
 2020-03-24 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1756/2020
 C241T C3037T C14408T A23403G G25644T C26942T GGG28881AAC

EPI_ISL_457707
 2020-03-24 2020-06-02
 Oman hCoV-19/Oman/205024076/2020
 ATTAAAGGTTTATACCTTCCCAG1- G24T C241T C1059T C2110T C3037T C14408T A23403G G24368T G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_457736
 2020-03-24 2020-06-02
 Italy hCoV-19/Italy/5062/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457769 MT646054
 2020-03-24 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00114/2020
 C241T C3037T A4589C C13730T C14408T A23403G G25429T

EPI_ISL_457801 MT646073
 2020-03-24 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00059/2020
 C241T C1059T C3037T G4504T C5869T C14408T A23403G G25563T C27964T

EPI_ISL_457816 MT646087
 2020-03-24 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00127/2020
 C241T C1059T C3037T G11401T C14408T C16260T A23403G G25563T G26690T C28821A

EPI_ISL_457817 MT646088
 2020-03-24 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00128/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_457824
 2020-03-24 2020-06-02
 Turkey hCoV-19/Turkey/Istanbul-BezmCoV1/2020
 C241T AAGTCATTT686- C3037T C7765T C14408T C17690T C18877T A23403G G25563T C28432T

EPI_ISL_457993
 2020-03-24 2020-06-02
 Oman hCoV-19/Oman/RESP-20-5414/2020
 C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_458029
 2020-03-24 2020-06-03
 Taiwan hCoV-19/Taiwan/TSGH-38/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_458700
 2020-03-24 2020-06-04
 United Kingdom hCoV-19/England/NORT-288F5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2327K C3037T C14408T A16172R A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_459686
 2020-03-24 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-17027D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G C26895T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_459868
 2020-03-24 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-04/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C1059T C3037T C14408T A23403G G25217T G25563T G29688T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_460145 MT520220
 2020-03-24 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00086/2020
 ATTAA1- C241T C2416T C3037T C14408T T19026G A19155G A23403G G25563T

EPI_ISL_460149 MT520224
 2020-03-24 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00023/2020
 ATTAAA1- C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460214 MT520289
 2020-03-24 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00063/2020
 ATTAAA1- C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460240 MT520315
 2020-03-24 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00037/2020
 AT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_460281 MT520356
 2020-03-24 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00094/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T T6069C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460326 MT520401
 2020-03-24 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460334 MT520409
 2020-03-24 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00039/2020
 A1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAA29901-

EPI_ISL_460661
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460662
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460674
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A19359G A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460684
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460686
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460763
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6310T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460782
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461155
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461182
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A12820G C13119T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461255
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461257
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C C1426T ATG1605- C27425G C27945T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461258
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461260
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461266
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G25618A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461283
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T T13006C C14408T G19684T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461284
 2020-03-24 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T T13006C C14408T G19684T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461436
 2020-03-24 2020-06-06
 United States hCoV-19/USA/WA-UW-5455/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C6040T C14408T A23403G G25563T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_462187
 2020-03-24 2020-06-08
 Belgium hCoV-19/Belgium/DWJ-0324333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462358
 2020-03-24 2020-06-08
 Singapore hCoV-19/Singapore/240/2020
 C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462359
 2020-03-24 2020-06-08
 Singapore hCoV-19/Singapore/241/2020
 C6312A A8364R G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462448
 2020-03-24 2020-06-08
 Spain hCoV-19/Spain/IrsiCaixa-sp142/2020
 C241T C3037T G5230T C11563T C14408Y A20268G A23403G CGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29750-

EPI_ISL_463972
 2020-03-24 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T AAGTCATTT686- C1059T T2379Y TGAAGCTGTTGAAGCT2578- C2667S C3037T AT3744MW T8835- ACAAGAGAAGTGGGTTTTGTCGTGCCTGGTTTGCCTGGCACGATATTACGC8840- C14408T C16616T TTGTATGTAAATAAACATGCATTCCACACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAACAATTACCATTTTTCTATTACTCTGACAGTCCATG19294- TCTCATGGAAAACAAGTAGTGTCAGATATAGATTATGTACCACTAAAGTCTGCTACGTGTATAACACGTTGCAATTTAGGTGGTGCTGTCTGTAGACATCAT19399- A19505G G19507T GTACAGATTGTATCTCGATGCTTATAACATGATGATCTCAGC19509A AA21550MW A23403G G25563T T27638K TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_465818
 2020-03-24 2020-06-11
 United Kingdom hCoV-19/England/20136016104/2020
 A2480G C2558T A10323G G11083T C14805T C18652T C25480Y G26144T

EPI_ISL_465819
 2020-03-24 2020-06-11
 United Kingdom hCoV-19/England/20136016204/2020
 A2480G C2558T A10323G G11083T C14805T C18652T G26144T

EPI_ISL_467444
 2020-03-24 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0055/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAA29893-

EPI_ISL_467957
 2020-03-24 2020-06-16
 United States hCoV-19/USA/CA-SR0426/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468002
 2020-03-24 2020-06-16
 Australia hCoV-19/Australia/SAP244/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G28908T

EPI_ISL_468401 MT628137
 2020-03-24 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1431/2020
 C241T C3037T C5467T C8389T C14408T C17550T C21997Y A23403G G25563T

EPI_ISL_468403 MT628139
 2020-03-24 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1433/2020
 A1- C241T C3037T G11401T C14408T A23403G C28603T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_468440 MT628173
 2020-03-24 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1490/2020
 ATTAAA1- C241T C3037T C14097Y C14408T A18174R A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_468441
 2020-03-24 2020-06-16
 United States hCoV-19/USA/CA-CZB-1491/2020
 C241T C3037T ATCCTACCATACAGAAAGACGTTCTTGAGTGTAATGTGAAAACTACCGAAGTTGTAGGAGAC6426- C6648M C6926T C13551T C14408T C19170T A19338R G19509A A23403G T25272C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_468442
 2020-03-24 2020-06-16
 United States hCoV-19/USA/CA-CZB-1492/2020
 ATTA1- C241T C3037T ATCCTACCATACAGAAAGACGTTCTTGAGTGTAATGTGAAAACTACCGAAGTTGTAGGAGAC6426- C6926T C13517Y C14408T C19170T G19509A A23403G T25272C GGG28881AAC

EPI_ISL_468443
 2020-03-24 2020-06-16
 United States hCoV-19/USA/CA-CZB-1493/2020
 C241T C3037T ATCCTACCATACAGAAAGACGTTCTTGAGTGTAATGTGAAAACTACCGAAGTTGTAGGAGAC6426- C6926T C13551T C14220Y C14408T C19170T G19509A A23403G T25272C GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_468445
 2020-03-24 2020-06-16
 United States hCoV-19/USA/CA-CZB-1495/2020
 C241T C3037T ATCCTACCATACAGAAAGACGTTCTTGAGTGTAATGTGAAAACTACCGAAGTTGTAGGAGAC6426- C6926T C13551T C14408T C19170T G19509A A23403G T25272C GGG28881AAC

EPI_ISL_468519 MT628242
 2020-03-24 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T T6450Y C14408T A23403G G25563T A28841G C29421T

EPI_ISL_468771
 2020-03-24 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2487/2020
 C241T C3037T T8797C C12473Y C14408T A20268G A23403G G29734C

EPI_ISL_468779
 2020-03-24 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2472/2020
 C4226A C8782T C17470T G22349A C26088T T28144C

EPI_ISL_468815
 2020-03-24 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2422/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_468859
 2020-03-24 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2423/2020
 C241T C2416T C3037T C14408T C20480T A23403G G25563T G26233T

EPI_ISL_469278
 2020-03-24 2020-06-18
 United Arab Emirates hCoV-19/United Arab Emirates/L4711/2020
 C884T G1397A G8653T G11083T A19073G T28688C G29742T

EPI_ISL_470840
 2020-03-24 2020-06-19
 Australia hCoV-19/Australia/WA22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470873
 2020-03-24 2020-06-19
 Australia hCoV-19/Australia/WA56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_475100
 2020-03-24 2020-06-23
 Sweden hCoV-19/Sweden/20-08461/2020
 C241T C1059T C3037T T10288A C14408T A23403G G24368T G25563T

EPI_ISL_475101
 2020-03-24 2020-06-23
 Sweden hCoV-19/Sweden/20-08357/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25537T G25563T

EPI_ISL_475102
 2020-03-24 2020-06-23
 Sweden hCoV-19/Sweden/20-08358/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475103
 2020-03-24 2020-06-23
 Sweden hCoV-19/Sweden/20-08359/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C28833T

EPI_ISL_475104
 2020-03-24 2020-06-23
 Sweden hCoV-19/Sweden/20-08361/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475341
 2020-03-24 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D12A6/2020
 C241T C1170T C3037T C14408T C16260T T19839C A23403G C26681T GGG28881AAC C29585T

EPI_ISL_475492
 2020-03-24 2020-06-23
 United Kingdom hCoV-19/England/SHEF-D0DA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C26735T C26885T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475618
 2020-03-24 2020-06-23
 United States hCoV-19/USA/CA-CSMC14/2020
 C241T A1096G C3037T C14408T C18877T A23403G G25563T C27494T

EPI_ISL_476140
 2020-03-24 2020-06-25
 Sweden hCoV-19/Sweden/20-08356/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25537T G25563T

EPI_ISL_476141
 2020-03-24 2020-06-25
 Sweden hCoV-19/Sweden/20-08360/2020
 C241T C1059T C3037T C12068T C14408T A23403G G24368T G25537T G25563T

EPI_ISL_476142
 2020-03-24 2020-06-25
 Sweden hCoV-19/Sweden/20-08362/2020
 C241T C1059T C3037T C12870T C14408T A23403G G24368T G25563T

EPI_ISL_477698
 2020-03-24 2020-06-29
 United States hCoV-19/USA/WA-UW-2045/2020
 ATTAAA1- A31T C36T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_477699
 2020-03-24 2020-06-29
 United States hCoV-19/USA/WA-UW-2048/2020
 AT1GA C36T C2263T C8782T C17747T A17858G C18060T T23010C T25542A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_477700
 2020-03-24 2020-06-29
 United States hCoV-19/USA/WA-UW-2056/2020
 AT1-D A4D C36T C8782T C17747T A17858G C18060T T28144C C29870A -29904AAAAAAAAAAAAAAAAA

EPI_ISL_477701
 2020-03-24 2020-06-29
 United States hCoV-19/USA/WA-UW-2059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T G11417T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_477727
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/BIRM-5E407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T TT27264- C27697T

EPI_ISL_478564
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/NORT-2846E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A7479G G11083T C14805T T17247C C25572T G26144T C28887T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478568
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/NORT-2847C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478569
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/NORT-2847D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478573
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/NORT-2848EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T G12331A C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479175
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D12B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21724T A23403G C24096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479176
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D12C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479179
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D12F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479187
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D1376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T A12286G C14805T G26144T G28089T G28812T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479190
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D13A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T A9634T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479193
 2020-03-24 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D13EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479644
 2020-03-24 2020-07-01
 Canada hCoV-19/Canada/NB-231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2210T C3037T C3792T C14408T G17027A A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479646
 2020-03-24 2020-07-01
 Canada hCoV-19/Canada/NB-233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479668 MT679202
 2020-03-24 2020-06-29
 United States SARS-CoV-2/human/USA/NYU-VC-014/2020
 ATTAAAGG1- G167A C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29616A TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_479672 MT679206
 2020-03-24 2020-06-29
 United States SARS-CoV-2/human/USA/NYU-VC-018/2020
 C241T C1059T C3037T C14408T A20979T A23403G G25563T AA29902-

EPI_ISL_479942
 2020-03-24 2020-07-01
 Japan hCoV-19/Japan/PG-0258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C9430T C14408T G22199T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479985
 2020-03-24 2020-07-01
 Japan hCoV-19/Japan/PG-0310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480003
 2020-03-24 2020-07-01
 Japan hCoV-19/Japan/PG-0328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C2706T C3037T C14408T A23403G G25429T C28887T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480036
 2020-03-24 2020-07-01
 Japan hCoV-19/Japan/PG-0366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C6312A C13730T C17678T T19785C C23929T C26425T C28311T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480037
 2020-03-24 2020-07-01
 Japan hCoV-19/Japan/PG-0367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_481743
 2020-03-24 2020-07-03
 Canada hCoV-19/Canada/NB_245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2018G C3037T C14408T T21995C A23403G G25563T A29139G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482330
 2020-03-24 2020-07-03
 United States hCoV-19/USA/OR-PROV-050/2020
 C241T C1267T C3037T C6278T C14408T A17496G A23403G GGG28881AAC

EPI_ISL_482332
 2020-03-24 2020-07-03
 United States hCoV-19/USA/OR-PROV-052/2020
 A4236G G11083T C14805T T25655C G26144T

EPI_ISL_482584
 2020-03-24 2020-07-04
 China hCoV-19/Hangzhou/HZCDC7328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C1917T C3037T C14408T G21850T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483010
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A20268G A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_483011
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T T27504A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_483012
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1292/2020
 ATTAA1- T490A C3177T C6040T C8782T T8944C G12478A T18736C C24034T C25803T T26729C G28077C T28144C C28507T C28896G G28985T A29700G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483013
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G1463A C3037T G7557A C8818T C14408T A23403G G25563T C29803T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483014
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1294/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_483015
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A4236G G11083T C14805T T25655C G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483016
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1296/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_483017
 2020-03-24 2020-07-06
 United States hCoV-19/USA/MN-MDH-1297/2020
 ATTAAA1- C8123T C8782T C17010T A17858G C18060T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483068
 2020-03-24 2020-07-07
 Australia hCoV-19/Australia/SAP195/2020
 ATTAAAGGTTTA1- T1368C C6990T G11083T C14805T C20736T C23707T G26144T

EPI_ISL_483094
 2020-03-24 2020-07-07
 Australia hCoV-19/Australia/SAP312/2020
 AT1- C4540T C8782T T9477A C13584T C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483120
 2020-03-24 2020-07-07
 Australia hCoV-19/Australia/SAP344/2020
 ATTA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483137
 2020-03-24 2020-07-07
 Australia hCoV-19/Australia/SAP366/2020
 ATT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483706
 2020-03-24 2020-07-08
 Israel hCoV-19/Israel/n4278/2020
 C1059T C3037T C4999G G9173T T10426C C11109T C12115T -21782A A21892G C23525T T23620A C24308T A24684- G25563T C29555T

EPI_ISL_483986
 2020-03-24 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D5FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483992
 2020-03-24 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10948G C14408T A23403G C27542T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484008
 2020-03-24 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D76D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C635T G11083T G13627T C14805T C15540T G26144T A28338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484012
 2020-03-24 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D7A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13617T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484709
 2020-03-24 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484753
 2020-03-24 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485974
 2020-03-24 2020-07-10
 United States hCoV-19/USA/WA-UW-2020/2020
 ATTAAAGG1- C21T A1808G C8782T C15240T C17747T A17858G C18060T C21774T T28144C AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_485976
 2020-03-24 2020-07-10
 United States hCoV-19/USA/WA-UW-2029/2020
 TTA2GGC AAC34TTT C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485977
 2020-03-24 2020-07-10
 United States hCoV-19/USA/WA-UW-2034/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_485978
 2020-03-24 2020-07-10
 United States hCoV-19/USA/WA-UW-2053/2020
 ATTAAA1- C6696T C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_485979
 2020-03-24 2020-07-10
 United States hCoV-19/USA/WA-UW-2068/2020
 AT1GA A4T AA30CT C36T C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_487822
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G9928T C26088T G27870T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487965
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C6696T C11001T C12357T C18652T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488189
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F9B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488455
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F9A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488470
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-2849E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C673Y C3037T C8895Y G10097A T13216G C14408T A19960G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488475
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-284934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A17799G C19170T C25427T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488611
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-2846F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488658
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-28472B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488682
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-28206E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C10790T C17747T A17858G C18060T T25202K T27384C T28144C G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488725
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-284846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G6463T A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488768
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-281DFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22468T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488780
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-281F08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488795
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-281E1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T G13627T C14805T C15540T G25302T G26144T A28338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488796
 2020-03-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-281D59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22225T A23403G C29535T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491033
 2020-03-24 2020-07-15
 United States hCoV-19/USA/WA-UW-3534/2020
 ATTAAAGGTTTATA1- C36T C241T C3037T T6136C A10393G C14408T C14786T A23403G A28096G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_491172
 2020-03-24 2020-07-16
 Peru hCoV-19/Peru/INS-019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27769T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491428
 2020-03-24 2020-07-16
 Peru hCoV-19/Peru/INS-022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491430
 2020-03-24 2020-07-16
 Peru hCoV-19/Peru/INS-025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C8782T C10029T T12364A A19719T C26088T T28144C ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_492570
 2020-03-24 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130D3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492627
 2020-03-24 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130CC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492682
 2020-03-24 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130CF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1426T A2480G C2558T G11083T G14710T C14805T G26144T T29680G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492879
 2020-03-24 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10948G C14408T A23403G C27542T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494718
 2020-03-24 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1654/2020
 ATTA1- C241T C1059T C3037T G11138T C14408T C16762T A23403G G25563T

EPI_ISL_494727
 2020-03-24 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T A8252G C14408T A23403G G25563T

EPI_ISL_494728
 2020-03-24 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1668/2020
 ATTA1-

EPI_ISL_494732
 2020-03-24 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_494735
 2020-03-24 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_495359 MT791895
 2020-03-24 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0453/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C5884T G7936T C13487T C14408T G20060T C22858T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_495363 MT791899
 2020-03-24 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0457/2020
 AT1- C241T C1059T C3037T C14408T G18583T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_495395 MT791850
 2020-03-24 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0489/2020
 ATTAAAGGTT1- C241T C3037T C14408T C18877T C21727T A23403G G25563T G27987T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_495396 MT791851
 2020-03-24 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0490/2020
 AT1- C241T C1059T C3037T C14408T G18859T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_495613
 2020-03-24 2020-07-23
 United States hCoV-19/USA/MN-MDH-1314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C8782T C17747T A17858G C18060T C21614T A24694T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_495614
 2020-03-24 2020-07-23
 United States hCoV-19/USA/MN-MDH-1315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6861T C14408T C19170T G19509A A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_495616
 2020-03-24 2020-07-23
 United States hCoV-19/USA/MN-MDH-1317/2020
 ATTAAAGGTTTA1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T C29171T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495619
 2020-03-24 2020-07-23
 United States hCoV-19/USA/MN-MDH-1320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- T490A C3177T C8782T T18736C C24034T T26729C C26735T C27635T G28077C T28144C A29567C A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_495661 MT821781
 2020-03-24 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1486/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496921
 2020-03-24 2020-07-24
 United States hCoV-19/USA/MN-MDH-1335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_496922
 2020-03-24 2020-07-24
 United States hCoV-19/USA/MN-MDH-1336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A A27669G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_496923
 2020-03-24 2020-07-24
 United States hCoV-19/USA/MN-MDH-1337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_501182
 2020-03-24 2020-07-31
 Malaysia hCoV-19/Malaysia/1121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C19524T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501183
 2020-03-24 2020-07-31
 Malaysia hCoV-19/Malaysia/1204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A3180C C6312A G11083T C13730T C19524T C23929T C28311T

EPI_ISL_501560
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130FDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C8090T C10789T C11008T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501561
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130E66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1426T A2480G C2558T C5310T G11083T G14710T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501566
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130FFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4148T C14408T A23403G GGG28881AAC G29737T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501581
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-131032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501586
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130F27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501588
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130E1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T C29546T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501592
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130E57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18131T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501597
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130EC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC A29078G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501601
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130D78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501609
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130FAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501611
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130EB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501615
 2020-03-24 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260F14E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C11074T G11083T C14805T C24026Y G26144T C28313Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506971
 2020-03-24 2020-08-02
 South Korea hCoV-19/Korea/KCDC2177/2020
 AT1- C241T C3037T C3602T C14408T T19839C C21575T A23403G GGG28881AAC

EPI_ISL_506972
 2020-03-24 2020-08-02
 South Korea hCoV-19/Korea/KCDC2178/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_506973
 2020-03-24 2020-08-02
 South Korea hCoV-19/Korea/KCDC2179/2020
 ATTAAAG1- C241T C3037T C14408T A23403G G25429T

EPI_ISL_507012 MT820463
 2020-03-24 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC03/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_507016 MT820467
 2020-03-24 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC10/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507089
 2020-03-24 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1440A G2891A G6463T A24178G A27669G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507090
 2020-03-24 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507141
 2020-03-24 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D23FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T C26340T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507712
 2020-03-24 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C5892T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507916
 2020-03-24 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_507930
 2020-03-24 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21154/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T G960A C1059T C3037T C14408T G22708T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508794 MT834638
 2020-03-24 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0590/2020
 A1- C241T C3037T C14408T C22450T T22588C A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_508795 MT834639
 2020-03-24 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0591/2020
 AT1- C241T C3037T C14408T C22450T T22588C A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508796 MT834640
 2020-03-24 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0592/2020
 ATTAA1- C241T C3037T C14408T C22450T T22588C A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_508797 MT834641
 2020-03-24 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0593/2020
 AT1- C241T C3037T C14408T C22450T T22588C A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_508798 MT834642
 2020-03-24 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0594/2020
 A1- C241T C3037T C14408T C18131T C22450T T22588C A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508799 MT834643
 2020-03-24 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0595/2020
 ATTAAAGGT1- T490A C3177T C6040T C8782T C11124T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_508801 MT834645
 2020-03-24 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0597/2020
 ATTAAAGGTTT1- T490A C3177T C6040T C8782T C11124T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_508886
 2020-03-24 2020-08-04
 France hCoV-19/France/ARA14353/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T G29705T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508954
 2020-03-24 2020-08-04
 France hCoV-19/France/ARA13353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGG1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508955
 2020-03-24 2020-08-04
 France hCoV-19/France/ARA13367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGC1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508956
 2020-03-24 2020-08-04
 France hCoV-19/France/ARA13374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGT1- C241T C3037T A3291G C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508957
 2020-03-24 2020-08-04
 France hCoV-19/France/ARA13515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- C241T C3037T C14408T C15324T G17722A A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_509706 MT844046
 2020-03-24 2020-08-05
 United States SARS-CoV-2/human/USA/WI-CDC-0953/2020
 C241T C1059T C14408T A23403G G25563T G25660T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509730 MT846434
 2020-03-24 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0672/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509731 MT846435
 2020-03-24 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0673/2020
 A1- C241T C3037T C7858T C14408T C22450T T22588C A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509732 MT846436
 2020-03-24 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C22450T T22588C A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509734 MT846438
 2020-03-24 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0676/2020
 ATTA1- T490A C3177T C6040T C8782T C11124T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509735 MT846439
 2020-03-24 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0677/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_510891
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT0630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C3045T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510893
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT0632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510935
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT0676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T2482C C3037T T11205G C13944T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510936
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT0677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510970
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT0711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510975
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT0716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G662T ATG1605- C20270T G22785T A29683T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511245
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511248
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511249
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A18298G A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511250
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511252
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C6936T G9584T G11083T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511253
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C3045T G11083T T14295C C16985T C19273T G26144T C26299T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511254
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T A1230G C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511255
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C3045T G11083T T14295C C16985T C19273T G26144T C27263T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511326
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C3045T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511327
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511328
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511363
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511368
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511390
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G21761T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511392
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C9438T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511393
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511400
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511402
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4559A C7735T C14408T A23403G T27384C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511425
 2020-03-24 2020-08-07
 Portugal hCoV-19/Portugal/PT1466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C753T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511510
 2020-03-24 2020-08-08
 Portugal hCoV-19/Portugal/PT0961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T C14786T C19884T G22093A A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511723
 2020-03-24 2020-08-08
 Portugal hCoV-19/Portugal/PT1177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511724
 2020-03-24 2020-08-08
 Portugal hCoV-19/Portugal/PT1178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29025T C29523T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511725
 2020-03-24 2020-08-08
 Portugal hCoV-19/Portugal/PT1180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_514643 MT892990
 2020-03-24 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T T26819C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514644 MT892991
 2020-03-24 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1425/2020
 ATT1- A2480G C2558T T10480C G11083T C14805T T26130C G26144T C27559T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514650 MT892997
 2020-03-24 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1431/2020
 AT1- T383C C1238T C8782T A17858G C18060T T28144C T28924C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515327
 2020-03-24 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0044/2020
 ATT1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_515328
 2020-03-24 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0045/2020
 ATTA1- C241T C2416T C3037T C11651T C14408T C16111T A23403G G25563T

EPI_ISL_515329
 2020-03-24 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0046/2020
 ATTA1- C241T C2416T C3037T C11651T C14408T C16111T A23403G G25563T

EPI_ISL_515330
 2020-03-24 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0047/2020
 ATTAAA1- C241T C2416T C3037T C11651T C14408T C16111T A23403G G25563T

EPI_ISL_515331
 2020-03-24 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0048/2020
 AT1- C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_515332
 2020-03-24 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0049/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_515529
 2020-03-24 2020-08-19
 Brazil hCoV-19/Brazil/SP-626/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_515555
 2020-03-24 2020-08-19
 Brazil hCoV-19/Brazil/SP-154/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_515564
 2020-03-24 2020-08-19
 Brazil hCoV-19/Brazil/SP-187/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G24535K G25088T T25745C GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515565
 2020-03-24 2020-08-19
 Brazil hCoV-19/Brazil/SP-188/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G25088T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_515898
 2020-03-24 2020-08-20
 United States hCoV-19/USA/CA-CDPH005/2020
 ATTA1- C4540T C8782T T9477A C14805T C25685M G25979T T28144C C28311T C28657T C28863T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515899
 2020-03-24 2020-08-20
 United States hCoV-19/USA/CA-CDPH006/2020
 ATT1- C241T G545T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516804
 2020-03-24 2020-08-24
 Singapore hCoV-19/Singapore/832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517302
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A99B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C959T C2062T A2480G C2558T G11083T C12880T C14805T G22801R G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517303
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A99C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T C11776T C14805T C15017T G26144T

EPI_ISL_517308
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A12533G C14408T A23403G C25350T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517309
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C20767T A23403G A28771W GGG28881AAC

EPI_ISL_517310
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T T14655C C14805T G26144T G26918T

EPI_ISL_517312
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517313
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4436R C14408T C15237Y A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517314
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517315
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2536Y C3037T C14408T C15324Y A20268G C21575Y A23403G G29734C

EPI_ISL_517319
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9ACF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T19869C A23403G GGG28881AAC

EPI_ISL_517320
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9ADE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350T C29870A

EPI_ISL_517323
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C4668T C28708T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517324
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C16289T A23403G G25429T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517326
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R G8785A

EPI_ISL_517327
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A18812C A20268G A23403G AAAAAAAAAAA29893-

EPI_ISL_517328
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C14599Y C17747Y A17858G C18060Y T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517329
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T8168A C13862T C14408T A23403G C27294T C28836T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517330
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T A10323G G11083T C14805T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517336
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9BF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G24386T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517337
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9C05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- A9707G G11083T C23603T A26702G G26730T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517338
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9C14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C875A C2416T C3037T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_517344
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9C7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3619T C14408T A20268G A23403G G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517347
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9CAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_517350
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9CD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8814T G11083T A19476G G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517352
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9CF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15237Y A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517358
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9D5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C21058T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517360
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9D99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C13862T C14408T T14742A A23403G C25854T C28836T

EPI_ISL_517361
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9DA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517363
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9DC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517364
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9DD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1288Y C3037T G10097A C14408T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517365
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9DE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC

EPI_ISL_517369
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9E4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C10507T A17205G

EPI_ISL_517470
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA5BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1264R C3037T G10097A C14408T T18573A T19989W T22573C A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517471
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA5CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7609T C14408T T17055C A20268G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517472
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA5DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8025T C13019Y C14408T A20268G A23403G C29108T GA29734CG

EPI_ISL_517473
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA5EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G24386T G28580T GGG28881AAC

EPI_ISL_517475
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T C25096Y GGG28881AAC

EPI_ISL_517476
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G680A C3037T C14408T G15438T A20268G A23403G

EPI_ISL_517480
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C884T C3037T G10097A C14408T A23403G C23731T C27513Y GGG28881AAC

EPI_ISL_517482
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA67F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A A12458G T13216G C14408T A23403G C23731T C26606T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517484
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA69D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2293T C3037T C14408T A23403G G25993R T27348C

EPI_ISL_517485
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA6AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_517486
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA6BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7165T G10097A C14408T A23403G C23731T C26873T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517487
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA6CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A7479G G11083T C12242Y C14805T T17247C A22234G C25572T T25852A G26144T C28887T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517488
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA6D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C9996Y C14408T A23403G C23731Y C25587Y C27046Y C28344M G28580K GGG28881AAC

EPI_ISL_517489
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA6E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C884T C3037T G10097A C14408T A23403G C23731T C27513T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517496
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA75E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C9996T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517500
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA79A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8814T G11083T A19476G G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517501
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA7A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517505
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA7E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7764T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517506
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA7F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4455T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_517507
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517508
 2020-03-24 2020-08-24
 United Kingdom hCoV-19/England/LIVE-AA81F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC

EPI_ISL_517788 MT966110
 2020-03-24 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0898/2020
 ATTAAAGGTT1- T490A C2942T C3177T C8782T T18736C G19684T C24034T C25572T T26729C C27635T C27999T G28077C T28144C A29700G ACGCGGAGTACGATCGAGTGT29740- CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518858 MT919997
 2020-03-24 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1464/2020
 ATTAA1- C241T C1059T C3037T C3044T C14408T A23403G G25523T G25563T T27869C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_518871 MT920010
 2020-03-24 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T G14186T T18736C G18781A G18984T G19684T C24034T T26729C C27635T G28077C T28144C A29700G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_518893 MT920033
 2020-03-24 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1500/2020
 ATTA1- C241T G598T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_522547
 2020-03-24 2020-08-26
 France hCoV-19/Reunion/RUN-PIMIT1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522548
 2020-03-24 2020-08-26
 France hCoV-19/Reunion/RUN-PIMIT2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522550
 2020-03-24 2020-08-26
 France hCoV-19/Reunion/RUN-PIMIT8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1666C C3037T C14408T T18375C A23403G A24820G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523963
 2020-03-24 2020-08-27
 Brazil hCoV-19/Brazil/SP-165/2020
 ATTAAAGG1- A12C AC14TG C19T CA21GT C241T C1059T C3037T C14408T A23403G G25563T G29861T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_524430
 2020-03-24 2020-08-28
 United States hCoV-19/USA/NC-200414/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T G21974C G23224T A23403G G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_524797
 2020-03-24 2020-08-28
 Brazil hCoV-19/Brazil/MA-IEC-162157/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_525630
 2020-03-24 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-28157-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T C28006T G28077C T28144C A29700G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_525631
 2020-03-24 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-29389-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526434
 2020-03-24 2020-09-01
 United Kingdom hCoV-19/England/PORT-2D13C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529221
 2020-03-24 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61C09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C26936T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529597
 2020-03-24 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61A87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G13213A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529599
 2020-03-24 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61B75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C5055T G8371T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529600
 2020-03-24 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61BA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529602
 2020-03-24 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61C27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530045
 2020-03-24 2020-09-10
 Spain hCoV-19/Spain/MD-LP41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T87G C4540T C8782T T9477A T13279C T13914C C14805T G25979T T27919C T28144C C28657T C28863T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530264
 2020-03-24 2020-09-11
 Australia hCoV-19/Australia/QLD984/2020/P1
 C241T C3037T C14408T T17126C A20268G A23403G C28546A G28817T

EPI_ISL_530265
 2020-03-24 2020-09-11
 Australia hCoV-19/Australia/QLD985/2020/P1
 ATTAAAGGT1- C241T C3037T C14408T A23403G G25429T G25471T C26461T

EPI_ISL_530266
 2020-03-24 2020-09-11
 Australia hCoV-19/Australia/QLD986/2020/P1
 AT1- A187G C241T G520A C3037T C14408T A23403G C25916T

EPI_ISL_534820
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2E7C/2020
 C241T C3037T C10818T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_534830
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2F79/2020
 ATT1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T

EPI_ISL_534853
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B334F/2020
 A1515G C9223T C10277T G11083T C14805T T17247C G26144T

EPI_ISL_534857
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B344C/2020
 C241T C3037T C14408T A23403G G25429T C26461T

EPI_ISL_534867
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3585/2020
 C241T C3037T C14408T G22592T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_534870
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B35C1/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_534886
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B378F/2020
 A2480G C2558T G9188T G11083T C14805T G26144T

EPI_ISL_534890
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3813/2020
 C241T G626A C1059T C3037T C5144T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_534897
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3A2C/2020
 T1600C A2480G C2558T G11083T C14805T G26144T A29320C

EPI_ISL_534953
 2020-03-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B440F/2020
 C241T A2869G C3037T C12120T C14408T A23403G GGG28881AAC C29095T T29817C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_536072
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234853/2020
 ATTAAAGGTTTA1- C241T C1059T T1623C C3037T C6730T G14028K C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_536077
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G C28603T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536080
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234905/2020
 ATTAAA1- C241T C3037T C14408T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536082
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00234990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C18377T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536083
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T C18657Y T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536084
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235027/2020
 A1- C241T C1059T C3037T G11335T C14408T A23403G G25217T G25563T C27643T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536087
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536088
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G C25433T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536090
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G GGG28881AAC C29247T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536092
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235261/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T C14676T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536094
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G C25613T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536095
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235378/2020
 ATTA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C C25571T A26530R AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536096
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235380/2020
 ATTAAAG1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536097
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235424/2020
 ATTAA1- C241T C3037T C5512T T9667C C14408T A23403G G25947T G28361A GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536098
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235430/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T A13581R C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536099
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536101
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235561/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T G15732T T19143C A20268G A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536102
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235607/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1034G C3037T C5512T T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536104
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T T19839C A23403G G25522A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536105
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A1515G C9223T G11083T C14805T C15654Y T17247C A17799G C23127T G26144T G29477T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536109
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536110
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00235815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C15324T C19662T A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536121
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C5512T T9667C C14408T A23403G G25947T G28361A GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536124
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G GGG28881AAC C29421T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536126
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T G15766T A20268G A23403G C25096T G29734C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536127
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T G14580T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536129
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536130
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236430/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1473T C3037T C14408T A23403G GGG28881AAC G29473A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536131
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236439/2020
 ATTAAAGGTTTATACC1- C241T C3037T G11335T C14408T A23403G A23923C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536132
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236526/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A20268G A23403G C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536134
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236536/2020
 AT1- C241T C3037T C8208T C8266T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536137
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236558/2020
 ATTAAAGGTTTATACC1- C8782T C17747T A17858G C18060T C18657Y T28144C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536138
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536139
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- T2702W C8782T C17747T A17858G C18060T C18657T T28144C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536143
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236601/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C14925T C18998T A23403G G25563T G29540A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536144
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2388Y C3037T C8208T G9267A T9667C C11788T C14408T A23403G G25947T G28361A G28374A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536206
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536246
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T C15324T A23403G C25433T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536248
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239397/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25217T G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536250
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239407/2020
 ATTAAAGGTTTATAC1- A158C C241T C3037T CC14407TT C15324T A23403G C25433T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536251
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C15324T A23403G C25433T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536252
 2020-03-24 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239413/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T A20268G A23403G C26313T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_537437
 2020-03-24 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T6023C T13006C C14408T G17302T A23403G G25563T C25688T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_537693
 2020-03-24 2020-09-16
 Spain hCoV-19/Spain/CN-CSIC-97006476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8293T C8782T T9477A C12924T C14805T T14814C G25979T C26681T G27670T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538444
 2020-03-24 2020-09-17
 Singapore hCoV-19/Singapore/917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23422T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538453
 2020-03-24 2020-09-17
 Singapore hCoV-19/Singapore/922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T C28758T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538454
 2020-03-24 2020-09-17
 Singapore hCoV-19/Singapore/923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16750T A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538762
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9EC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C583T C2416T C3037T G8371T G11083T C14408T C22477T A23403G G24794K G25563T C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538766
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538773
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9DE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538779
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9EB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6706T C14408T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538956
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9DF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479K C14408T A23403G G27589K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538957
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9EEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539033
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8D7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539078
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A875E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1190T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539080
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A892B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- AAGTCATTT686- C1190T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539085
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A885B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T T22521C A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539130
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8C31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539147
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8D89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y A1904R C3037Y A3958R C5826Y C8090Y C10789Y C14408Y C17074Y A23403R G24348K C25000Y GGG28881RRS CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539173
 2020-03-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539553
 2020-03-24 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-209814/2020
 C241T C1059T C3037T C3702G C12400T C14408T A23403G G25563T AAAAAAAA29896-

EPI_ISL_539554
 2020-03-24 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-209815/2020
 C241T C3037T C14408T A20268G A23403G T25485C ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_540432 MW023388
 2020-03-24 2020-09-21
 United States SARS-CoV-2/human/USA/TN-CDC-0815/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_540433 MW023389
 2020-03-24 2020-09-21
 United States SARS-CoV-2/human/USA/TN-CDC-0818/2020
 C241T C1059T C3037T C11224T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_541144
 2020-03-24 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1259/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_547531
 2020-03-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C C17410T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560593
 2020-03-24 2020-09-29
 France hCoV-19/France/HDF8236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T G17964A T18537C A23403G C23575T CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_563820
 2020-03-24 2020-09-30
 Australia hCoV-19/Australia/VIC13741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- A2480G C2558T C7279T G11083T C14805T G26144T C27208T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563832
 2020-03-24 2020-09-30
 Australia hCoV-19/Australia/VIC13777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C1471Y C6310A C6312A G11083T C13730T G18756T C19524T C23929T C28311T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

MT263459
 2020-03-24 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW380/2020
 AT1CA A4T C241T C1059T C3037T C14408T A23403G G25563T ACT27246CTC T27255G G27337D A27340C T27342G A27344G C27964T -29904ANAAAAAAANGTC

MT459986
 2020-03-24 2020-05-12
 United States SARS-CoV-2/human/GUM/GU-NHG-02/2020
 C6312A G11083T C13730T C23929T C28311T

MT477844
 2020-03-24 2020-05-14
 United States SARS-CoV-2/human/USA/AK040/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C3293T C14408T A21825C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT477853
 2020-03-24 2020-05-14
 United States SARS-CoV-2/human/USA/AK118/2020
 ATTAAAGGTTTAT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT477854
 2020-03-24 2020-05-14
 United States SARS-CoV-2/human/USA/AK122/2020
 ATTAAAGGTTTATACCTTCC1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C28606T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT509458
 2020-03-24 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509462
 2020-03-24 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706150
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706153
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G A27338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706156
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G C24310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706161
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706180
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C13019T C16457T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706184
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706185
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706187
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706189
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706192
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706194
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706199
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A263G C1191T C3037T C14408T C20325T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706201
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706205
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T T15366C C18481T A23403G G25563T G25687A C29296T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706245
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706322
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706323
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G A23592G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706325
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706326
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25793T T27299C GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706327
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3736T C8655T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706328
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706338
 2020-03-24 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T21024C G29711T A29725G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810523
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1654-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G11138T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810532
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1667-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810533
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1668-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810537
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1672-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810540
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1675-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810559
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0426-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810919
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0181-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C23595T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810927
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0192-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810930
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0197-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A4198T C14408T T19791C A23403G G25563T C25710T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810952
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0240-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G10533A C14408T C16289T C16762T A23403G G25563T C29460A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810953
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0245-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811171
 2020-03-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0111-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C7945T CC14407TT C17850T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT956911
 2020-03-24 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-70064673/2020
 C8782T T9477A C14805T T28144C C28657T C28863T

MW023404
 2020-03-24 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1259/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

NMDC60013207
 2020-03-24 2020-06-01
 China hCoV-19/Guangzhou/ID059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013250
 2020-03-24 2020-06-01
 China hCoV-19/Guangzhou/ID032/2020
 ATT1- A4T G2891A A23403G G28883C G29868C

NMDC60013271
 2020-03-24 2020-06-01
 China hCoV-19/Guangzhou/ID034/2020
 A1- T3G G8171A G11083T C14805T T17247C G26144T A29850G TG29867AA

NMDC60013272
 2020-03-24 2020-06-01
 China hCoV-19/Guangzhou/ID035/2020
 TTAAAGGT2- G8171A G11083T C14805T T17247C G26144T

NMDC60013273
 2020-03-24 2020-06-01
 China hCoV-19/Guangzhou/ID033/2020
 ATTAAAGGTTTA1- G11083T C14805T G26144T

NMDC60013282
 2020-03-24 2020-06-01
 China hCoV-19/Guangzhou/ID056/2020
 A1- A4T C8782T T28144C G28878A G29742A A29850W

EPI_ISL_418303
 2020-03-25 2020-03-25
 United Kingdom hCoV-19/England/SHEF-BFEAC/2020
 A1515G C9223T G11083T C14805T T17247C G26144T A26392G

EPI_ISL_418305
 2020-03-25 2020-03-25
 United Kingdom hCoV-19/England/SHEF-BFED9/2020
 C241T C3037T C14408T A23403G T27222C GGG28881AAC

EPI_ISL_418306
 2020-03-25 2020-03-25
 United Kingdom hCoV-19/England/SHEF-BFEE8/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC C29627T

EPI_ISL_418318
 2020-03-25 2020-03-25
 United Kingdom hCoV-19/England/SHEF-BFFB8/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_418320
 2020-03-25 2020-03-25
 United Kingdom hCoV-19/England/SHEF-BFFD6/2020
 A1350T A2480G C2558T G11083T C14805T T24436C G26144T

EPI_ISL_420023 MT322420
 2020-03-25 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G C28720T GGG28881AAC G29868R C29870A

EPI_ISL_420163
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C086E/2020
 ATG1605- T4949C C16887T

EPI_ISL_420165
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C08C8/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420166
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0813/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420167
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0804/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420225
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C052B/2020
 C241T T3022A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420231
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0691/2020
 C1457T A2480G C2558T G11083T C14805T G26144T C26340T

EPI_ISL_420232
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0682/2020
 A2480G C2558T C8078T C8917T G11083T C14805T G26144T

EPI_ISL_420233
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C050D/2020
 C241T C3037T C14408T G17964A A23403G C23575T G24959T

EPI_ISL_420243
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C05FE/2020
 C241T C3037T C14408T G15780T A23403G

EPI_ISL_420247
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0585/2020
 G11083T C14805T C16887T G26144T G28842T

EPI_ISL_420248
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C06BF/2020
 C241T C3037T C14408T A20268G A23403G G28655T G29734C

EPI_ISL_420250
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C06DD/2020
 C241T C3037T C14408T C15324T A23403G C28310T

EPI_ISL_420251
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0673/2020
 ATG1605-

EPI_ISL_420254
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C01EB/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420255
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0163/2020
 G11083T C14805T G26144T

EPI_ISL_420261
 2020-03-25 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0725/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420379
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/RGE-0325122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420380
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/DPG-0325123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420384
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/NML-0325127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420385
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/EC-0325128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8394T C14408T C15277T C15324T G21641A T22020C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420394
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/OS-0325137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C15277T C15324T A23403G G29234C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_420400
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/VT-0325143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420402
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/GJJ-0325145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T A28108G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420403
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/DVG-0325146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A11991G C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420404
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/PC-0325147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420405
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/LJ-0325148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420409
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/ZF-0325152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420410
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/VPMV-0325153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C14408T T19839C A23403G G25489T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420413
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/DJMG-0325156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9891T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420414
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/DRV-0325157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420415
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/DCS-0325158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C8394T C14408T C15277T C15324T C19032T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420419
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/VLG-0325162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8102T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420422
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/JJC-0325165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G10098A G11083T C11580T C14805T T17247C G26144T G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420423
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/PJM-0325166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4795T G10073A C12743A C14408T C15324T G23401T A23403G G28690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420428
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/VM-0325171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4728T C14408T C16192T A23403G G25563T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420435
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/CJE-0325178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24794T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420437
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/DMM-0325180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C T23182C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420438
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/BJ-0325181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420439
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/PC-0325182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420440
 2020-03-25 2020-04-06
 Belgium hCoV-19/Belgium/BS-0325183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420879
 2020-03-25 2020-04-07
 Australia hCoV-19/Australia/QLDID931/2020
 ATTAAA1- C1670T C8782T C17747T A17858G C18060T C23430T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_421285
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421286
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C9113T T18736C C21648T C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421289
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421294
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421296
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421299
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6884T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421306
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6884T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421307
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421308
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421320
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421325
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421330
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421340
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421341
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421342
 2020-03-25 2020-04-07
 United States hCoV-19/USA/WI-UW-83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T T27447C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421653
 2020-03-25 2020-04-09
 Latvia hCoV-19/Latvia/01/2020
 C241T C3037T C14408T C15324T A23403G A24241T C28706T

EPI_ISL_421654
 2020-03-25 2020-04-09
 Latvia hCoV-19/Latvia/02/2020
 ATG1605- T6163A C12923A C13430T C19366T C23127T T28110C

EPI_ISL_421655
 2020-03-25 2020-04-09
 Latvia hCoV-19/Latvia/03/2020
 C241T G1440A C3037T

EPI_ISL_421656
 2020-03-25 2020-04-09
 Latvia hCoV-19/Latvia/04/2020
 G1440A G2891A G5704A C6606T C6628T A6944G C17766T A19126G

EPI_ISL_421776
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201360297/2020
 C241T C3037T C11681T C14408T A23403G C25350Y C27005T

EPI_ISL_421779
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201360300/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_421781
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201360499/2020
 C241T C3037T C14408T A23403G C23575T G23587C

EPI_ISL_421782
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201360506/2020
 C241T C3037T C14408T A23403G G25785T GGG28881AAC

EPI_ISL_421783
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201360508/2020
 C241T C3037T C14408T A23403G G25785T GGG28881AAC G29449T

EPI_ISL_421785
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201361008/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_421790
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201361022/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_421804
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380042/2020
 C241T C3037T C14408T A23403G C28377Y GGG28881AAC

EPI_ISL_421806
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380049/2020
 A2480G C2558T G11083T C14805T C16329T G26144T

EPI_ISL_421807
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380050/2020
 C241T C3037T C9763T C14408T A23403G C25624T C26002A GGG28881AAC

EPI_ISL_421809
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380054/2020
 C241T C3037T C7998Y C14408T A23403G GGG28881AAC

EPI_ISL_421810
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380055/2020
 C241T C3037T G7798T C8025T C14408T A20268G A23403G G29734C

EPI_ISL_421811
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380056/2020
 C241T C3037T C8025T C14408T A20268G A23403G G29734C

EPI_ISL_421818
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380070/2020
 C241T C3037T A10948G C14408T A23403G GGG28881AAC

EPI_ISL_421822
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380217/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_421823
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380221/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_421824
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380228/2020
 C241T C3037T T8777C G10097A C14408T A23403G C23731T GGG28881AAC

EPI_ISL_421825
 2020-03-25 2020-04-09
 United Kingdom hCoV-19/England/201380229/2020
 C241T C3037T T8777C G10097A C14408T A23403G C23731T GGG28881AAC

EPI_ISL_422029
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25F44/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_422041
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25C3E/2020
 C241T C3037T C6990T C14408T A23403G

EPI_ISL_422055
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25E47/2020
 A1- G1440A G2891A C25669T G28851T

EPI_ISL_422063
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25B6E/2020
 ATTAAAGGTTTATACC1- A2480G C2558T C11074T G11083T C14805T G26144T

EPI_ISL_422064
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25C01/2020
 ATTA1- C241T C3037T C6990T C14408T A23403G

EPI_ISL_422078
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26013/2020
 A1- G1440A G2891A C25669T G28851T

EPI_ISL_422085
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25FAE/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_422094
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2617A/2020
 ATTAAAGGTTTATACCT1- C241T G1719R C3037T T3100G G8174A G10097A C14408T A23403G C23731T C24759A G25947T GGG28881AAC C29253T

EPI_ISL_422106
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-260F5/2020
 ATTA1- G1440A G2891A C25669T G28851T A29467T

EPI_ISL_422107
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25FF9/2020
 AT1- C241T C3037T T4186C G11801A C14408T T19839C A23403G G25552T GGG28881AAC AAAAAA29898-

EPI_ISL_422108
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2581C/2020
 AT1- A2480G C2558T G11083T T13599C C14805T G25455T G26144T

EPI_ISL_422110
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-260D7/2020
 AT1- C241T C3037T C14408T A23403G AAAAAAAAA29895-

EPI_ISL_422114
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25BC8/2020
 G11083T C14805T T17247C G17443T G22708T G26144T A29903-

EPI_ISL_422117
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25F71/2020
 C241T C3037T C10401Y C14408T A20268G A23403G

EPI_ISL_422118
 2020-03-25 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-25F9F/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_422437
 2020-03-25 2020-04-10
 Italy hCoV-19/Italy/VR_20COV21-26/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G GGG28881AAC TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_422438
 2020-03-25 2020-04-10
 Italy hCoV-19/Italy/VR_20COV21-37/2020
 ATTAAAGGTTTATACCT1- C98T C241T C3037T C14408T A23403G TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_422732 LR877978
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3122T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422735 LR877976
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422737 LR877909
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2543G C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422738 LR877894
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422741 LR877908
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T18837C A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422742 LR877895
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422745 LR877905
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T G16852T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422746 LR877891
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G13309T C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422748 LR877901
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T A28305G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422895 LR877974
 2020-03-25 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordHolland_4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423078
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/20134010904/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_423119
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/20134022104/2020
 C241T C3037T A10874R C14408T A19336M C23248Y A23403G

EPI_ISL_423215
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/20136012004/2020
 G8A A2480G C2558T G11083T C14805T G26144T

EPI_ISL_423218
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360126/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423219
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360127/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_423223
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360136/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423242
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360210/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_423243
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360211/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_423250
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360220/2020
 A2480G C2558T T6760C G11083T G11417K C14805T G26144T G28028K

EPI_ISL_423251
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360221/2020
 A2480G C2558T G11083T T14145C C14805T G26144T

EPI_ISL_423253
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360223/2020
 A2480G C2558T G11083T C14786T C14805T G26144T

EPI_ISL_423262
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360277/2020
 C241T G1895K C2416T C3037T A13712R C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_423264
 2020-03-25 2020-04-12
 United Kingdom hCoV-19/England/201360317/2020
 C241T G1895K C2416T C3037T T11027Y C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_424545
 2020-03-25 2020-04-13
 Iceland hCoV-19/Iceland/524/2020
 C241T C3037T T11959C C14408T A20268G G21204T A23403G

EPI_ISL_424551
 2020-03-25 2020-04-13
 Iceland hCoV-19/Iceland/530/2020
 A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_425052
 2020-03-25 2020-04-14
 Belgium hCoV-19/Belgium/UGent-8/2020
 C241T C3037T C14408T T19839C A23403G C24099T C26882T GGG28881AAC

EPI_ISL_425053
 2020-03-25 2020-04-14
 Belgium hCoV-19/Belgium/UGent-9/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_425054
 2020-03-25 2020-04-14
 Belgium hCoV-19/Belgium/UGent-10/2020
 T514C ATG1605-

EPI_ISL_425056
 2020-03-25 2020-04-14
 Belgium hCoV-19/Belgium/UGent-15/2020
 T514C ATG1605- G14622T C17410T T18723C G19891T

EPI_ISL_425060
 2020-03-25 2020-04-14
 Belgium hCoV-19/Belgium/UGent-20/2020
 T514C ATG1605- G14622T C17410T T18723C

EPI_ISL_425061
 2020-03-25 2020-04-14
 Belgium hCoV-19/Belgium/UGent-21/2020
 T514C ATG1605- G14622T C17410T T18723C

EPI_ISL_425064
 2020-03-25 2020-04-14
 Belgium hCoV-19/Belgium/UGent-25/2020
 C241T C3037T C14408T A23403G

EPI_ISL_425175
 2020-03-25 2020-04-14
 United States hCoV-19/USA/WI-UW-118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425210
 2020-03-25 2020-04-14
 Spain hCoV-19/Spain/Valencia86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425561
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E55D/2020
 G1440A G2891A C10507T A26612T

EPI_ISL_425562
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E57B/2020
 G3052A C6027T G11083T C14805T T18771C G25352T G26144T

EPI_ISL_425593
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E7A2/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_425792
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR632/2020
 ATG1605- C12710T C28854T

EPI_ISL_425793
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR634/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T C25665T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_425794
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/Scotland/CVR635/2020
 C241T T1455C C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_425933
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB189/2020
 C241T C3037T T3118C C14408T C16289T A23403G G25429T

EPI_ISL_425937
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB194/2020
 C241T C3037T C14408T A23403G C25433T G29405A

EPI_ISL_425939
 2020-03-25 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB198/2020
 C241T C3037T C14408T T16203C A20268G A23403G G29734C

EPI_ISL_426083 MT345806
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2087/2020
 ATTAAAGGTTTATA1- C16G C19A AAC34TTY C241T C1059T C3037T C14408T A23403G G25563T C28826T -29904AAANAAAA

EPI_ISL_426085 MT345812
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904TANANATANANAAA

EPI_ISL_426086 MT345821
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCC1- C1059T C3037T C6255T C14408T C21077T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426090 MT345819
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2112/2020
 ATTAAAGGTTT1- C241T C1059T A2651G C3037T C6040T C14408T A23403G G25563T -29904AAAAAAAA

EPI_ISL_426091 MT345809
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2119/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426092 MT345801
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAA1- C241T A761G C1059T C3037T C14408T G15760A A23403G G25563T AAAA29900-

EPI_ISL_426093 MT345808
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C1059T C3037T C14408T A23403G G25563T C27804T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426095 MT345824
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C241T C1059T C3037T C8078T C14408T A23403G G25563T G29553A AAAAAAAAAA29894-

EPI_ISL_426096 MT345822
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- G1598A C6310T C7267T C8782T C17747T A17858G C18060T A18802G G27327T T28144C G28378T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426097 MT345829
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- TCT83CTC GG90-C T150C T153G C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAA

EPI_ISL_426098 MT345826
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_426099 MT345825
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2145/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A31T AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T AAAA29900-

EPI_ISL_426100 MT345827
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34CTTT C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T G29864A TG29867AA C29870A

EPI_ISL_426101 MT345830
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2149/2020
 ATTAAAGGTTTATAC1- AACC34TTTA C241T C1059T C3037T C9951T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_426102 MT345823
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C12025T C17747T A17858G C18060T T28144C G28703T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426107 MT345832
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2181/2020
 ATTAAAGGTTTATACCTTCCCAG1- A31T AAC34TTT A4236G A8031G G11083T C14805T T25655C G26144T G27382T AAAAAAAAAAA29893-

EPI_ISL_426111 MT345833
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2203/2020
 ATTAAAGGTT1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_426112 MT345865
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2208/2020
 ATTAAAGGTTTATACCT1- AACC34TTTH C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_426113 MT345861
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- A35W C241T C1059T C3037T C3698A C14408T A23403G G25563T G29553A AAAA29900-

EPI_ISL_426114 MT345862
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2213/2020
 A1- T3C AGGTTTATACCTTC6- GG23- TC232GA AGG235- C241T C1059T C3037T C14408T A23403G G25563T -29904ADAGV

EPI_ISL_426115 MT345860
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- A229C TCT232CAC C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAA29896-

EPI_ISL_426116 MT345859
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_426117 MT345856
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34WWY C241T C3037T C14408T C18877T A23403G G25563T -29904ANANANANA

EPI_ISL_426118 MT345854
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- AACC34HTTH C241T C1059T C3037T C6040T C14408T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_426120 MT345853
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2230/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C17550T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426121 MT345851
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGA1- C3037T C14408T C18877T A23403G G25563T AAAAAAAAA29895-

EPI_ISL_426127 MT345835
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ACC35TYH C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C29250T -29904ATNNA

EPI_ISL_426128 MT345855
 2020-03-25 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T AAGTCATTT686- C1059T C3037T C14408T G19656T A23403G C24784T G25563T A26433G AAAA29900-

EPI_ISL_426314
 2020-03-25 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-29275-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426532
 2020-03-25 2020-04-17
 United States hCoV-19/USA/AZ-TG270152/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426536
 2020-03-25 2020-04-17
 United States hCoV-19/USA/AZ-TG271591/2020
 C241T C1059T C3037T C14408T C21767T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426545
 2020-03-25 2020-04-17
 United States hCoV-19/USA/AZ-TG271884/2020
 C241T C1059T C3037T C14408T C17825T A23403G G25563T G25767C C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426558
 2020-03-25 2020-04-17
 United States hCoV-19/USA/AZ-TG273280/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28621A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426559
 2020-03-25 2020-04-17
 United States hCoV-19/USA/AZ-TG273282/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28621A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426636 MT641663
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/NT19/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_426709 MT451286
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC407/2020
 C1076T G1397A G3564K G11083T G22661T C27964T T28688C G29742T

EPI_ISL_426800 MT451368
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC534/2020
 C241T C527T C3037T T7438C C14408T A23403G A26864G C29353T

EPI_ISL_426801
 2020-03-25 2020-04-17
 Australia hCoV-19/Australia/VIC535/2020
 ATG1605- C5007T C8917T C17898T

EPI_ISL_426810 MT451375
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC547/2020
 C1076T G1397A T9037C G11083T C11832T C27964T T28688C G29742T

EPI_ISL_426811 MT451376
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC548/2020
 C241T C3037T G7042T C14408T A23403G GGG28881AAC

EPI_ISL_426813 MT451379
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC551/2020
 C241T C1059T C3037T G3564T C14408T A23403G G24933T G25563T G25593C

EPI_ISL_426816 MT451381
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC555/2020
 C241T ATG518- C1059T C3037T C11916T C14408T C19018T A23403G G25563T

EPI_ISL_426819 MT451383
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC558/2020
 C241T C1059T C3037T C14408T C20148T A23403G G25563T

EPI_ISL_426822 MT451386
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC561/2020
 C241T C3037T G3564T C14408T C20762T C21575T A23403G GGG28881AAC

EPI_ISL_426825 MT451389
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC565/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28253G C28311T C28657T C28863T

EPI_ISL_426826 MT451390
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC566/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_426828 MT641693
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC568/2020
 G374A G3564T C6936T C8782T C17747T A17858G C18060T A20916R G24933T T28144C

EPI_ISL_426831 MT451391
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC571/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C29774T

EPI_ISL_426832 MT451392
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC572/2020
 A2480G C2558T G3564K C8078T C8917T G10631A C10889T G11083T C14805T G16795T G26144T

EPI_ISL_426841 MT451400
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC584/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_426854 MT451410
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC597/2020
 C241T C313T C3037T C14408T A23403G G28337T GGG28881AAC

EPI_ISL_426855 MT451411
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC598/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_426856 MT451412
 2020-03-25 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC599/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_427161 MT358693
 2020-03-25 2020-04-17
 United States SARS-CoV-2/human/USA/CT-UW-3845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T T6691C C7843T G7936T G11083T A13768G C14805T A15869T T17247C C17639T G26144T T28693C C28915T TG29867AA C29870A

EPI_ISL_427166 MT358703
 2020-03-25 2020-04-17
 United States SARS-CoV-2/human/USA/ID-UW-3888/2020
 ATTAAAGGT1- C36T C241T C1059T C3037T C11224T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427183 MT358683
 2020-03-25 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3828/2020
 ATTAAAGG1- ATACCTTCCCAGGTAACAAACC12- C36T C241T C1059T C3037T C4423T C14408T A23403G G25563T T28930C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427184 MT358684
 2020-03-25 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3829/2020
 TT2-B C36T C241T C1059T C3037T C7765T G10846T C14408T C19488T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_427192 MT358692
 2020-03-25 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C36T C241T C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427197 MT358698
 2020-03-25 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3868/2020
 ATTAAAGGTT1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_427200 MT358701
 2020-03-25 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T C14408T A23403G G25563T C28472T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427303
 2020-03-25 2020-04-18
 Brazil hCoV-19/Brazil/RJ-818/2020
 ATTAAAGGTTTATACC1- C241T C622T C3037T C14408T A23403G T27299C GGG28881AAC T29148C G29783T G29786C TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_427337
 2020-03-25 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4326S/2020
 C241T C3037T C14408T A23403G

EPI_ISL_427338
 2020-03-25 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4328S/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_427339
 2020-03-25 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4332S/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_427398
 2020-03-25 2020-04-18
 Taiwan hCoV-19/Taiwan/TSGH-11/2020
 C6312A G11083T C13730T C23929T C28311T A29901C -29904AAAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAAAAAAAAAAAAAAAAAAACCCCAAAAAAAAAAAAAAAACCAAATAAACAATAAAATAAAAATTAAAATTAAAAT

EPI_ISL_427621
 2020-03-25 2020-04-19
 United States hCoV-19/USA/AK-PHL115/2020
 ATTAAAGGTTT1- C241T C3037T G8600T C14408T A23403G C25350T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_428252
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T334C C3037T C3373A C14408T C19454T T23155C A23403G C24795T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428297
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428298
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428299
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10519T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428300
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C A16984G C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428301
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C A16984G C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428302
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C875T A9848G C29013T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428304
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428305
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C29415T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428307
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C29347T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428308
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G25244T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428309
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G6341A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428310
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428311
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428312
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A9496G C9520T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428313
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428314
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428315
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428316
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428317
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A27474G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428318
 2020-03-25 2020-04-20
 United States hCoV-19/USA/WI-UW-222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428354
 2020-03-25 2020-04-20
 France hCoV-19/France/IDF3577/2020
 C241T C3037T T9172C A10948G C14408T G16068T A23403G G26730T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_428361
 2020-03-25 2020-04-20
 France hCoV-19/France/IDF3703/2020
 C241T C3037T C14408T C15324T A22206G A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_428891
 2020-03-25 2020-04-22
 Russia hCoV-19/Russia/Yakutia-83301/2020
 C48A C241T G1355T C3037T G10097A C14408T G17964T A23403G C23731T GGG28881AAC

EPI_ISL_428908
 2020-03-25 2020-04-22
 Russia hCoV-19/Russia/Pskov-83602/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_428915
 2020-03-25 2020-04-22
 Russia hCoV-19/Russia/Sverdlovsk-82904/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_428997 MT385421
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB015/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_429001 MT385425
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB046/2020
 ATTA1- C5849T C16887T C17634A

EPI_ISL_429012 MT385436
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB016/2020
 ATTA1- G1440A G2891A A6944G C9430T

EPI_ISL_429017 MT385441
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB030/2020
 ATTAAA1- C241T GTTATG515- C3037T G6032A C14408T C18877T A23403G G25563T C27092T

EPI_ISL_429021 MT385445
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB045/2020
 G2840A C8782T C17747T A17858G C18060T A26045G T28144C AAAAAAAAAAAAAAAAA29887-

EPI_ISL_429035 MT385459
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB042/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T C29364T

EPI_ISL_429037 MT385461
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB09/2020
 ATTAAAGGTTTA1- C241T T833C C1059T C3037T A7901G C14408T C18681T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429039 MT385463
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB036/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_429045 MT385469
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB039/2020
 ATTAAAGGTTTATA1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429048 MT385472
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB043/2020
 ATTAAAGGTTTA1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_429174
 2020-03-25 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0038/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429530
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI437/2020
 C241T C1059T C3037T T8788C C14408T C19512T C23114T A23403G G25563T G26951A

EPI_ISL_429533
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI444/2020
 C241T C1059T C3037T T11233A C14408T C15842A A23403G G25563T G27604T

EPI_ISL_429534
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI446/2020
 C241T C1059T C3037T A11996G C14408T A23403G G25563T

EPI_ISL_429535
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI448/2020
 C241T C1059T C3037T T8788C C14408T C22747T A23403G G25563T G26951A

EPI_ISL_429536
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI449/2020
 C241T C1059T C3037T C8293T C14408T A23403G G25563T

EPI_ISL_429538
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI451/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429539
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI454/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429540
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI456/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429542
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI461/2020
 ATG1605- C20402T C28253A

EPI_ISL_429543
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI462/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429544
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI463/2020
 C241T C3037T G5950T C14408T C18877T A23403G G24197T G25563T G25599T C26735T

EPI_ISL_429545
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI464/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429546
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI466/2020
 C218T C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429547
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI467/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429548
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI468/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429549
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI469/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_429550
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI470/2020
 C241T G611A C3037T C14408T A23403G

EPI_ISL_429551
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI471/2020
 C241T A761G C1059T C3037T A6825C C14408T A23403G G25563T

EPI_ISL_429552
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI472/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429553
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI473/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429554
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI474/2020
 C241T C1059T C3037T C12781T C14408T C15842A A23403G C25499T G25563T

EPI_ISL_429555
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI475/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429558
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI479/2020
 C241T C1059T C3037T C6968T C14408T A23403G G24368T G25563T

EPI_ISL_429559
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI480/2020
 C241T C1267T C3037T C14408T A23403G C28331T GGG28881AAC C29284T

EPI_ISL_429560
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI481/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T C26461T

EPI_ISL_429561
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI482/2020
 C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_429575
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI507/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26721T

EPI_ISL_429577
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI509/2020
 C241T G410T C1059T A2674G C3037T C13225T C14408T A23403G G25563T

EPI_ISL_429578
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI510/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_429580
 2020-03-25 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI512/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_429618 MT375447
 2020-03-25 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4741/2020
 ATT1- A4T C36T C241T C1059T C3037T C14408T G19542T A23403G G25563T AA29902-

EPI_ISL_429767
 2020-03-25 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS3437586/2020
 C241T C1059T C3037T C4320T C14408T A23403G G24834T G25563T C25688T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_429872
 2020-03-25 2020-04-24
 Turkey hCoV-19/Turkey/HSGM-11518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C884T G1397A G8653T G11083T T28688C G29742T

EPI_ISL_430112
 2020-03-25 2020-04-25
 Russia hCoV-19/Russia/Ulan-Ude-RII4562V/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_430154 MT632629
 2020-03-25 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S300/2020
 A34T C241T C1059T C3037T C14408T A23403G G25563T G28703C G29553A

EPI_ISL_432502
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CB0F2/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27513T GGG28881AAC

EPI_ISL_432712
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/England/SHEF-BFE8E/2020
 C241T C3037T C3619T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_432713
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/England/SHEF-BFEF7/2020
 C401T A2480G C2558T C8078T C8917T C9360T G11083T C14805T G26144T

EPI_ISL_433316
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- GTCATGTTA510- C12710T C26636T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433321
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2196C G11083T C14805T C17172A T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433326
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR694/2020
 C241T C3037T C5812T C14408T A23403G GGG28881AAC

EPI_ISL_433327
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR702/2020
 C241T C3037T C7047T C14408T A23403G G26615T GGG28881AAC

EPI_ISL_433350
 2020-03-25 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27281T G28851T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434111 MT632988
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S351/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434112 MT632986
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S352/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434113 MT632902
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S353/2020
 C8782T C15924T C17747T A17858G C18060T T28144C

EPI_ISL_434114 MT632927
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S354/2020
 C8782T C17747T A17858G C18060T C21575T T28144C

EPI_ISL_434115 MT633014
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S355/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434116 MT633015
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S356/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434117 MT632996
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S357/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434118 MT632973
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S358/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434119 MT632885
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S359/2020
 C8782T C16393T C17747T A17858G C18060T C21575T T28144C

EPI_ISL_434120 MT632994
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S360/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434156 MT632989
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S396/2020
 C8782T C17747T A17858G C18060T C21575T T28144C

EPI_ISL_434157 MT633032
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S397/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434165 MT633026
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S405/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434178 MT632968
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S418/2020
 C8782T C17747T A17858G C18060T C21575T T28144C

EPI_ISL_434182 MT632975
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S422/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434189 MT633028
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S429/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434190 MT633034
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S430/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434263 MT632959
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S503/2020
 G3231T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434270 MT632793
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S510/2020
 C1929T C5784T A8072G C8782T C9207T C17747T A17858G C18060T C18129T G26730A T28144C

EPI_ISL_434281 MT632855
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S521/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_434292 MT632980
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S532/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434293 MT632829
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S533/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434294 MT632857
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S534/2020
 C241T C1059T C3037T C7164T C14408T A23403G G25563T G26842T G29553A

EPI_ISL_434295 MT632834
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S535/2020
 C241T C1059T C3037T C7431T C14408T A23403G C25350T G25563T G29553A

EPI_ISL_434304 MT632938
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S544/2020
 C8782T A10844G C17747T A17858G C18060T T28144C

EPI_ISL_434327 MT632953
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S567/2020
 C8782T C17747T C17766T A17858G C18060T T28144C

EPI_ISL_434329 MT632908
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S569/2020
 C241T C1059T C3037T C12102T C14408T A23403G G25563T

EPI_ISL_434340 MT632870
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S580/2020
 C241T C1059T C3037T C14408T A21043G A23403G G25563T G29553A

EPI_ISL_434525 MT811646
 2020-03-25 2020-04-29
 United States SARS-CoV-2/human/USA/SEARCH-0068-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T CTT22286- A23403G G25563T G27463T ATTTGCTTT27579- C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_434539
 2020-03-25 2020-04-29
 Costa Rica hCoV-19/Costa Rica/0006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T A18196C A23403G CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_434641
 2020-03-25 2020-04-30
 Sweden hCoV-19/Sweden/20-08682/2020
 C241T C1059T C3037T G7452T C14408T A23403G G24368T G25563T

EPI_ISL_434654
 2020-03-25 2020-04-30
 Sweden hCoV-19/Sweden/20-06383/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_434655
 2020-03-25 2020-04-30
 Sweden hCoV-19/Sweden/20-06468/2020
 C241T C3037T C14408T A23403G

EPI_ISL_434677 MT324684
 2020-03-25 2020-04-11
 United States SARS-CoV-2/ENV/USA/UF-3/2020
 T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAA29890-

EPI_ISL_434890
 2020-03-25 2020-05-01
 United States hCoV-19/USA/TX-HMH230/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_434958
 2020-03-25 2020-05-01
 United States hCoV-19/USA/TX-HMH366/2020
 C241T C3037T C14408T A23403G C23707T C29441G

EPI_ISL_434962
 2020-03-25 2020-05-01
 United States hCoV-19/USA/TX-HMH371/2020
 C241T C3037T C6449T C14408T A23403G

EPI_ISL_435046 MT428552
 2020-03-25 2020-05-02
 Kazakhstan SARS-CoV-2/human/KAZ/NCB-2/2020
 C241T C3037T C14408T A23403G A26530G G28857T

EPI_ISL_435047 MT428553
 2020-03-25 2020-05-02
 Kazakhstan SARS-CoV-2/human/KAZ/NCB-3/2020
 C241T C3037T C14408T A18956G C19170T G19509A A23403G GGG28881AAC

EPI_ISL_435071
 2020-03-25 2020-05-02
 India hCoV-19/India/NCDC-02105/2020
 T76W C241T C3037T T8022K C14408T C18395T A23403G C25721M GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435409
 2020-03-25 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00417/2020
 C241T C313T C3037T C5144T C14408T A23403G C26333T GGG28881AAC G29527T

EPI_ISL_435421
 2020-03-25 2020-05-04
 Hungary hCoV-19/Hungary/MBL-003/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_435427
 2020-03-25 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00278w/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_435428
 2020-03-25 2020-05-04
 Hungary hCoV-19/Hungary/SRC-02801w/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_435431
 2020-03-25 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00572w/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_435678
 2020-03-25 2020-05-05
 Singapore hCoV-19/Singapore/73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAA1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T C28758T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_436097
 2020-03-25 2020-05-05
 Australia hCoV-19/Australia/QLDID935/2020
 A1- C241T C3037T C5223T G6894T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_436314
 2020-03-25 2020-05-06
 Spain hCoV-19/Spain/Valencia219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T G15438T A20268G A21137R A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436342
 2020-03-25 2020-05-06
 Spain hCoV-19/Spain/Valencia247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C10279T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436345
 2020-03-25 2020-05-06
 Spain hCoV-19/Spain/Valencia250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C313T C3037T C14408T A23403G C26907A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436467
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC12-04/2020
 C241T C1059T C1884T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436470
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC15-04/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436472
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC17-04/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436473
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC18-04/2020
 C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436474
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC20-04/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436477
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC24-05/2020
 C241T C1059T C2189T C3037T C14408T A23403G G25563T C26060T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436479
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC28-05/2020
 C241T C3037T A4595G C14408T T19839C A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436480
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC29-05/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436482
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC32-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436493
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC45-05/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G28085C G29540A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436503
 2020-03-25 2020-05-06
 United States hCoV-19/USA/PA-MGSC56-05/2020
 C8782T C17747T A17858G C18060T A24694T T28144C GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436630 MT706442
 2020-03-25 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T334C C3037T C3373A C14408T C19454T T23155C A23403G C24795T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436861 MT439291
 2020-03-25 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436864 MT439292
 2020-03-25 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A5011M C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436884 MT439289
 2020-03-25 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20104/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436885 MT439290
 2020-03-25 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C4891Y C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436886 MT439288
 2020-03-25 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10525T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436998
 2020-03-25 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-616/2020
 C241T C1059T C1917T C3037T C14408T C21428T A23403G G25563T

EPI_ISL_436999
 2020-03-25 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-617/2020
 C241T C1059T C3037T G6463T C14408T A23403G G25563T

EPI_ISL_437000
 2020-03-25 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-619/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437017
 2020-03-25 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-645/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T T28543C

EPI_ISL_437018
 2020-03-25 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-646/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437187
 2020-03-25 2020-05-08
 Indonesia hCoV-19/Indonesia/EJ-ITD853Sp/2020
 C12823T C20574T

EPI_ISL_437231
 2020-03-25 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0032/2020
 A2480G C2558T G6618A G11083T A11090T C14805T G17338T C20429T G26144T

EPI_ISL_437264
 2020-03-25 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0067/2020
 C241T C3037T C13019T C14408T A23403G C24213T GGG28881AAC

EPI_ISL_437307
 2020-03-25 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-439/2020
 ATTAAA1- C1314T G1397A T6202A C8964T C10202T G11083T C13476T C16247T C24865T T28688C G29742T

EPI_ISL_437308
 2020-03-25 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-515/2020
 ATTAAA1- C241T C3037T C14408T C15240T T19839C A23403G C26256T GGG28881AAC

EPI_ISL_437312
 2020-03-25 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1468/2020
 ATTAAA1- C884T G1397A T5182C G8653T G11083T T28688C G29742T

EPI_ISL_437316
 2020-03-25 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1004/2020
 ATTAAA1- C241T C3037T C5736T C14408T A20268G A23403G C23874T C25469Y

EPI_ISL_437333
 2020-03-25 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-11640/2020
 ATTAAA1- C3037T C14408T T15102C T19839C A23403G C26549T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_437335
 2020-03-25 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-12059/2020
 ATTAAA1- C228T C3037T C3903T C14408T A23403G C26549T T26551C A27354G AAAAAAAAAAAA29892-

EPI_ISL_437553
 2020-03-25 2020-05-11
 United States hCoV-19/USA/CA-SR0259/2020
 C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_437593
 2020-03-25 2020-05-11
 United States hCoV-19/USA/CA-SR0187/2020
 C241T C3037T C14408T C18814T TTTGGGTGTTTA21982- A23403G C29870M

EPI_ISL_437598
 2020-03-25 2020-05-11
 United States hCoV-19/USA/CA-SR0179/2020
 C241T C1059T C1887T C3037T C14408T G22487C A23403G G25563T C29870A

EPI_ISL_437933
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0047/2020
 C241T C3037T C14408T G15957T C18877T G21974R C21977Y T22521K A23403G G24197T G25563T C26735T C28057Y ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437934
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0048/2020
 C241T C1457T C1594T C3037T C9491T G11083T C11109T C14408T G21987T C22176M C22224M T22521K A23403G G25563T C29743T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437953
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0090/2020
 C241T C3037T C14408T T22521K A23403G C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437954
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0091/2020
 C241T C3037T C14408T T22521K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438103
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0276/2020
 C241T C3037T C14408T A23403G A24862G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438104
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0277/2020
 C241T C3037T G12832A C14408T T22521K A23403G C28868Y GGG28881AAC AAAA29900-

EPI_ISL_438105
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0278/2020
 C241T C3037T C14408T A20268G A23403G G29734C AAAAAAAAAAAAA29891-

EPI_ISL_438106
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0279/2020
 C8782T T9530K T22521K C26088T T27801C T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438107
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0280/2020
 C241T C3037T C6638Y C14408T A20268G T22521K A23403G C24333Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438108
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0281/2020
 C241T C3037T C14408T A20268G T22521K A23403G AAAAAAAAA29895-

EPI_ISL_438109
 2020-03-25 2020-05-12
 Austria hCoV-19/Austria/CeMM0283/2020
 C241T C3037T C14408T T22521K A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_438138
 2020-03-25 2020-05-12
 India hCoV-19/India/GMC-RR1191/2020
 C6312A G11083T C13730T C23929T C28311T C29733Y G29868R C29870A

EPI_ISL_438139
 2020-03-25 2020-05-12
 India hCoV-19/India/GMC-RK1090/2020
 -C6311AA G11083T C13730T C23929T C28311T C29870A

EPI_ISL_438970
 2020-03-25 2020-05-12
 Japan hCoV-19/Japan/Donner26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_442001
 2020-03-25 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C6C7B/2020
 A2480G C2558T C8078T C8917T G11083T C14805T G26144T

EPI_ISL_443274
 2020-03-25 2020-05-12
 France hCoV-19/France/B5374/2020
 C241T C3037T G11083T C14408T G21724T A23403G G27364T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_443298
 2020-03-25 2020-05-12
 France hCoV-19/France/IDF5851/2020
 C241T C1059T A2219G C3037T C14408T A23403G G25563T C28344T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_443299
 2020-03-25 2020-05-12
 France hCoV-19/France/IDF5853/2020
 C241T C1059T C3037T G6689A C14408T C14571T C16655T A23403G G25563T A27748C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_443309
 2020-03-25 2020-05-12
 France hCoV-19/France/HF3669/2020
 C241T C1059T C3037T T3710C C10582T C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_443316
 2020-03-25 2020-05-12
 France hCoV-19/France/HF3668/2020
 C241T C1059T C3037T T3710C C10582T C14408T A23403G G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_443719
 2020-03-25 2020-05-12
 United Kingdom hCoV-19/England/BRIS-1248A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C8090T C10789T C11008T C27247Y GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_445084
 2020-03-25 2020-05-14
 United States hCoV-19/USA/TX_GCID_192000135/2020
 ATTA1CCCG AGGTTT6G A12C T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

EPI_ISL_445107
 2020-03-25 2020-05-15
 United States hCoV-19/USA/CA-SR0115/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_445172 MT474129
 2020-03-25 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1124/2020
 C8782T T10129C C17747T A17858G C18060T T28144C

EPI_ISL_445224
 2020-03-25 2020-05-15
 Sweden hCoV-19/Sweden/20-06459/2020
 G1440A G2891A

EPI_ISL_445336
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Concepcion_3/2020
 A1CCAACAACACAGTTTATGATCCTTTGCAACCTGAA -5GACTCATTCAAGGAGGAGTTAG C241T C3037T C8389T C14408T A23403G G25563T CATGTGATTTTAATA29838T CT29854TC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_445338
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_3/2020
 A1CCAACAACACAGTTTATGATCCTTTGCAACCTGAA -5GACTCATTCAAG T76W T78K C241T C3037T C8389T C14408T C18687Y A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445339
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_4/2020
 A1GGTTTATGATCCTTTGCAACCTGAA -5GACTCATTCAAGGAGGAGTT C241T T892C C3037T C8389T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445340
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C8389T C12880T C14408T A23403G G25563T A28850T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838T

EPI_ISL_445342
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6384T C8389T C14408T A23403G G25563T -G29842CAC A29850T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_445343
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C8389T C14408T A23403G G25563T CA29838TG GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_445346
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_12/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C8389T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_445347
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T G2516A C3037T T7192C C8389T C14408T A23403G C25000Y G25563T GAT29843CTC T29848C TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_445348
 2020-03-25 2020-05-15
 Chile hCoV-19/Chile/Temuco_14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C18877T A23403G G25563T A27315R C29197Y G29747R ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_447117 MT506544
 2020-03-25 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20320/2020
 C241T C1059T C3037T C12525Y C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447257
 2020-03-25 2020-05-17
 Taiwan hCoV-19/Taiwan/TSGH-31/2020
 

EPI_ISL_447268
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059252/2020
 C241T C3037T C14408T C15277T A21917G A23403G A26530G AAAAAAAAAAAA29892-

EPI_ISL_447269
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059251/2020
 C241T C1059T C3037T C14408T C14708T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447271
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059238/2020
 G11083T G12067T C14805T T17247C C17676T G26144T G26660T C29627T AAAAAAAAAAAA29892-

EPI_ISL_447273
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059233/2020
 C241T C1059T C3037T C14408T G19429T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447274
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059232/2020
 C241T C1059T C3037T G7295T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447275
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059231/2020
 C241T C1059T C3037T G7295T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447279
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059203/2020
 C241T C1059T C3037T G13617T C14408T C22264T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447280
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/990059202/2020
 C241T C1059T G2035T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447292
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/701002540/2020
 C241T C1059T C3037T C14408T A23403G G25563T C28887T AAAAAAAAAAAA29892-

EPI_ISL_447293
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/701002538/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447294
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/701002504/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447295
 2020-03-25 2020-05-17
 Israel hCoV-19/Israel/701002489/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447474
 2020-03-25 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C17642T A20268G A23403G G24173T G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447533
 2020-03-25 2020-05-17
 Spain hCoV-19/Spain/Barcelona_VH7663/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_447617
 2020-03-25 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU23/2020
 C241T C3037T A5855G C7945T C14408T T19839C A23403G GGG28881AAC G29628T G29751A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_447618
 2020-03-25 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU24/2020
 C241T C1059T C3037T C11750A C14408T C17733T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_447888 MT481928
 2020-03-25 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1137/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T C17410A A23403G G25563T C27964T

EPI_ISL_448972
 2020-03-25 2020-05-19
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB730/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T T19839C A23403G A24205T A24253G GGG28881AAC

EPI_ISL_448974
 2020-03-25 2020-05-19
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB75E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_450337
 2020-03-25 2020-05-20
 Spain hCoV-19/Spain/Barcelona_VH7924/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G T27215C G29734C

EPI_ISL_450346
 2020-03-25 2020-05-20
 Norway hCoV-19/Norway/Trondheim-S4/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_450347
 2020-03-25 2020-05-20
 Norway hCoV-19/Norway/Trondheim-S5/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T C14408T G15380T A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_450449 MT499175
 2020-03-25 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1200/2020
 ATTA1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_450450 MT499176
 2020-03-25 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1201/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450451 MT499177
 2020-03-25 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1202/2020
 ATTA1- C241T G1719A C3037T C14408T G18984T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_450459 MT499185
 2020-03-25 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1210/2020
 ATTAAAGGTT1- C241T C3037T C14408T G22021T A23403G GGG28881AAC

EPI_ISL_450618 MT509685
 2020-03-25 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20339/2020
 C241T C1059T C3037T T3834Y C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_450724
 2020-03-25 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C026/2020
 G11083T C14230T C14805T T17247C G26144T

EPI_ISL_451138
 2020-03-25 2020-05-23
 Australia hCoV-19/Australia/SAP133/2020
 A1- T1368C C6990T G11083T C14805T C20736T C23707T G26144T

EPI_ISL_451183
 2020-03-25 2020-05-23
 Uganda hCoV-19/Uganda/UG001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T C16293T C24138G T28144C G28878A G29742A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_451450
 2020-03-25 2020-05-25
 United States hCoV-19/USA/NY-NYUMC735/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451460
 2020-03-25 2020-05-25
 United States hCoV-19/USA/NY-NYUMC745/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_451740 LR824313
 2020-03-25 2020-05-25
 Switzerland 100790
 A9483M G11083T C14805T T17247C G22381S G22487R G26144T

EPI_ISL_451744 LR824301
 2020-03-25 2020-05-25
 Switzerland 100794
 C241T C3037T G11138T C14408T C15324T C18912Y A19298W T22516W A23403G T25451Y C27741T

EPI_ISL_451745 LR824305
 2020-03-25 2020-05-25
 Switzerland 100795
 C241T C3037T T14208Y C14408T C15324T C16887T C19325Y A19339M C19448Y A23403G G29422T

EPI_ISL_451747 LR824310
 2020-03-25 2020-05-25
 Switzerland 100797
 C241T C601Y C884Y C1059T C3037T G3068A C14408T A23403G G25563T G26754K

EPI_ISL_451748 LR824309
 2020-03-25 2020-05-25
 Switzerland 100798
 C241T C1427T C3037T C14408T G18972T G19406R A20268G T22426Y A23403G C28854T

EPI_ISL_451749 LR824303
 2020-03-25 2020-05-25
 Switzerland 100799
 C241T G2833K C3037T A13712R C14408T A19298W G19342S T19378Y T22516W A23403G G24077T C27641Y G27758K C29144T

EPI_ISL_451750 LR824307
 2020-03-25 2020-05-25
 Switzerland 100800
 C241T C3037T G11083T C14408T A19298W G19327S G19394R A19548W T19839C A23403G A28780R GGG28881AAC

EPI_ISL_451751 LR824308
 2020-03-25 2020-05-25
 Switzerland 100801
 C241T C3037T C4002T G10097R C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_451755 LR824327
 2020-03-25 2020-05-25
 Switzerland 100805
 C241T C3037T C14408T C15324T A23403G G28881T

EPI_ISL_451780 LR824343
 2020-03-25 2020-05-25
 Switzerland 100832
 C241T C1059T C3037T C14408T G19398K C19470Y T19479W C22347S A22395R T22516W A23403G G25563T C25688T

EPI_ISL_451781 LR824340
 2020-03-25 2020-05-25
 Switzerland 100833
 C241T C3037T C14408T C15324T T19301Y C19448Y G19539R C22347S A23403G C28512T

EPI_ISL_451787 LR824345
 2020-03-25 2020-05-25
 Switzerland 100839
 C241T C3037T C4014T C9532T C14408T A19298W T19389Y A21171R T22499K T22501Y T22516W A23403G G26951K G28068K GGG28881AAC

EPI_ISL_451788 LR824354
 2020-03-25 2020-05-25
 Switzerland 100840
 C241T C1059T C3037T C14408T G19342S G19509K A23403G G25563T G26690K

EPI_ISL_451791 LR824351
 2020-03-25 2020-05-25
 Switzerland 100844
 G11083T C14805T T17247C G19478K T22516W G26144T C28054Y

EPI_ISL_452103
 2020-03-25 2020-05-26
 Germany hCoV-19/Germany/BAV-MVP0018/2020
 T514C ATG1605- C17410T G17679T T18750C

EPI_ISL_452562
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV001196/2020
 C241T C3037T C14408T A20268G A23403G T28600C

EPI_ISL_452567
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV001176/2020
 C241T C3037T C14408T C15960Y A20268G A23403G

EPI_ISL_452572
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV001164/2020
 C241T G1018K C3037T G3564K G3815K G7017K C14408T G15769K C16289T A23403G G24933K G25429T

EPI_ISL_452577
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV001155/2020
 C241T C1059T C3037T G3564K C14408T G16377T A23403G G25217T G25563T G27074T

EPI_ISL_452677
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV000882/2020
 T6394C C8782T C17470T C26088T G26709A T28144C

EPI_ISL_452680
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV000879/2020
 C241T C3037T C11824T C14408T A20268G A23403G

EPI_ISL_452682
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV000875/2020
 C241T C1059T C3037T G11083K T13006C C14408T G17302T A23403G G25563T C25688T

EPI_ISL_452683
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV000874/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_452684
 2020-03-25 2020-05-27
 Spain hCoV-19/Spain/COV000873/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_453466
 2020-03-25 2020-05-27
 United Kingdom hCoV-19/Northern Ireland/NIRE-101E22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G15438T A20268G A23403G C26684Y

EPI_ISL_453827
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T721C C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453828
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T721C C3037T T8518C G10007A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453832
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453833
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T G2801T C3037T C13680T C14408T C21077T A23403G C25728T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_453834
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453835
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453839
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453847
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C8782T TTA20423- C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453848
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C8782T C19263T C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454143
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T G19684T G20560A G22201T A23403G G25217T G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454202
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454203
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T721C C3037T G10007A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454303
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C335T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454344
 2020-03-25 2020-05-28
 Portugal hCoV-19/Portugal/PT0621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T T12532C C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454571
 2020-03-25 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/7263/2020
 C8782T T9477A C14805T G23426T G25979T T28144C C28657T C28863T

EPI_ISL_454572
 2020-03-25 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/7341/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454770
 2020-03-25 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10021/2020
 ATTAAA1- C241T C3037T C14183T C14408T A23403G A24508G C27046T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_454791
 2020-03-25 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordBrabant_10042/2020
 ATTAAAGGTTT1- T514C ATG1605- G6662A C11653T C16762T C16985T G22471T A23403G C23557T C25511T AAAAAA29898-

EPI_ISL_454951
 2020-03-25 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-197/2020
 G18281T

EPI_ISL_455217
 2020-03-25 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T C16466T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455447
 2020-03-25 2020-05-29
 Poland hCoV-19/Poland/PL_P34/2020
 C241T C3037T C3587T G7936A C11572T C14408T A23403G GGG28881AAC

EPI_ISL_455700
 2020-03-25 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_2406/2020
 C33G C37A C241T C3037T C14408T A23403G A26530G

EPI_ISL_455986
 2020-03-25 2020-06-01
 United States hCoV-19/USA/LA-EVTL143/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455987
 2020-03-25 2020-06-01
 United States hCoV-19/USA/LA-EVTL144/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455988
 2020-03-25 2020-06-01
 United States hCoV-19/USA/LA-EVTL145/2020
 C241T C643T C1059T C1288T C3037T C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455990
 2020-03-25 2020-06-01
 United States hCoV-19/USA/LA-EVTL147/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25667T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456012
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC775/2020
 C241T C3037T C4113T C14408T A20268G A23403G C29762T

EPI_ISL_456017
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC780/2020
 G124A C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456020
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC783/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26447T

EPI_ISL_456022
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC785/2020
 C241T C1059T C3037T C14408T A20755C C21772T A23403G G25563T

EPI_ISL_456023
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC786/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456024
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC787/2020
 C241T C1059T C3037T C14408T C21552T A23403G G25563T

EPI_ISL_456027
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC790/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_456033
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC797/2020
 C241T C1059T C3037T C6541T C14408T A23403G G25563T

EPI_ISL_456039
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC803/2020
 C241T C3037T C14408T A17744G A23403G

EPI_ISL_456042
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC806/2020
 C241T C3037T C14408T A23403G G25644T GGG28881AAC

EPI_ISL_456046
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC810/2020
 C241T C1059T C3037T C11916T C14408T C14925T C18998T A23403G G25563T G29540A

EPI_ISL_456049
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC813/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_456053
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC817/2020
 C241T C1059T C3037T C14408T A23403G A24051G G25563T

EPI_ISL_456060
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC824/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456062
 2020-03-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC826/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_456076
 2020-03-25 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T27299C C27644T GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_456077
 2020-03-25 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_456247
 2020-03-25 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1778/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456321
 2020-03-25 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1984/2020
 C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_457144
 2020-03-25 2020-06-02
 United Kingdom hCoV-19/England/EXET-135BD3/2020
 A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_457170
 2020-03-25 2020-06-02
 United Kingdom hCoV-19/England/EXET-135DFB/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC

EPI_ISL_457182
 2020-03-25 2020-06-02
 United Kingdom hCoV-19/England/EXET-135F31/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC

EPI_ISL_457658
 2020-03-25 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CCFB8/2020
 G11083T C14805T G26144T

EPI_ISL_457703
 2020-03-25 2020-06-02
 Oman hCoV-19/Oman/205024123/2020
 ATTAAAGGTTTATACCTTCC1- A22T G24T C241T C3037T C14408T A23403G -28271A GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869TTC

EPI_ISL_457766 MT646106
 2020-03-25 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00110/2020
 C241T C676T C3037T C14408T A23403G T25430C G25471S GGG28881AAC

EPI_ISL_457822 MT646093
 2020-03-25 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00135/2020
 C241T C1059T C3037T G11083T C14134T C14408T A23403G G25563T T27384C

EPI_ISL_457825
 2020-03-25 2020-06-02
 Italy hCoV-19/Italy/AMC1-4634/2020
 ATTAAA1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_457994
 2020-03-25 2020-06-02
 Oman hCoV-19/Oman/RESP-20-5505/2020
 C241T G4255T C14408T A20355G A23403G C25702T

EPI_ISL_458130
 2020-03-25 2020-06-03
 Spain hCoV-19/Spain/Barcelona_VH8002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G5230T C14408T C14481T A20268G A23403G

EPI_ISL_458283
 2020-03-25 2020-06-04
 United States hCoV-19/USA/CA-SR0413/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_459609
 2020-03-25 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-170D4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2454Y C3037T C7113Y C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459861
 2020-03-25 2020-06-04
 Chile hCoV-19/Chile/PuertoNatales-31600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460101 MT520176
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00016/2020
 ATTAAAGGTTTATACCTTC1- G105T C241T C3037T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460102 MT520177
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00018/2020
 ATTAAAGGTTTATAC1- T3229C C8782T A14774G C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460105 MT520180
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00042/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460109 MT520184
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00067/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460111 MT520186
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T T833C C1059T G1274T C3037T C14408T A23403G G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460119 MT520194
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00069/2020
 ATTAAAGG1- C8782T C12415T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460122 MT520197
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00080/2020
 ATTAAA1- C241T C3037T C14408T A23403G C28603T G28899T

EPI_ISL_460126 MT520201
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00065/2020
 ATTAAA1- C241T T833C C1059T C3037T C14408T C16616T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460128 MT520203
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00100/2020
 ATTAAA1- C241T T833C C1059T C3037T C9438T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460143 MT520218
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00054/2020
 ATTAAAG1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_460175 MT520250
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T833C C1059T G1274T C3037T C14408T A23403G G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460184 MT520259
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T T20253C A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460202 MT520277
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00076/2020
 ATTAAA1- C241T C3037T C14408T A23403G C25916T T27299C GGG28881AAC T29148C C29769T AAAA29900-

EPI_ISL_460206 MT520281
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00032/2020
 ATTAAAGG1- C241T AAGTCATTT686- T833C C1059T C3037T C14408T A23403G G25563T C27964T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_460292 MT520367
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460297 MT520372
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T G7393T T10129C C14408T A17631G C17649T A23403G G25563T G26233T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460302 MT520377
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460310 MT520385
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460319 MT520394
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00015/2020
 ATTAAAGG1- C241T T2149C C2416T C3037T C14408T A23403G G25563T G26233T C27577T C29545T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_460335 MT520410
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C2416T C3037T C14408T A23403G C24096A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460364 MT520439
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00136/2020
 ATTAAA1- C241T C2416T C3037T G10631T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460369 MT520444
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00225/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T C18877T G19872T C21767T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460411 MT520486
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00090/2020
 ATTAAA1- TGAGATTCCTAAAGAGGAAGT3877- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_460421 MT520496
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00036/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T T4949C C11224T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460433 MT520508
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00147/2020
 ATTAAA1- TGAGATTCCTAAAGAGGAAGT3877- C8782T C17747T A17858G C18060T A24694T T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_460448 MT520523
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00075/2020
 ATTAAA1- C241T C3037T C14408T A20268G C23271T A23403G G25978A C29640T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460469 MT520544
 2020-03-25 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C241T C3037T C14408T C18877T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460701
 2020-03-25 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T381C C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460764
 2020-03-25 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C934A C3037T C13335T C14408T A23403G G28109T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460766
 2020-03-25 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T G16912T A17431G A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461063
 2020-03-25 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G27505A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461156
 2020-03-25 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17626T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461157
 2020-03-25 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G25677A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462188
 2020-03-25 2020-06-08
 Belgium hCoV-19/Belgium/CGP-0325334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C512T C1059T C3037T G11083T G14209T C14408T A23403G T24597C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462191
 2020-03-25 2020-06-08
 Belgium hCoV-19/Belgium/VMC-0325337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462193
 2020-03-25 2020-06-08
 Belgium hCoV-19/Belgium/LAM-0325339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462194
 2020-03-25 2020-06-08
 Belgium hCoV-19/Belgium/DBWC-0325340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C19881T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462234
 2020-03-25 2020-06-08
 Belgium hCoV-19/Belgium/SC-0325380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462256
 2020-03-25 2020-06-08
 Belgium hCoV-19/Belgium/REGA-0325402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T23287C A23403G A23870G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462463
 2020-03-25 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7360/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T T4690C C14408T C20178T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_462464
 2020-03-25 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7361/2020
 ATTAAAGGTTT1- C241T G1421A C1457T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462465
 2020-03-25 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7362/2020
 ATTAAAGGTT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463743
 2020-03-25 2020-06-10
 Cyprus hCoV-19/Cyprus/003/2020
 C241T A2869G C3037T C14408T C17733T A23403G GGG28881AAC C29095T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_465997
 2020-03-25 2020-06-11
 United Kingdom hCoV-19/England/20144024004/2020
 C241T C3037T C4897T T11522K C14408T A20268G C21772T A23403G C28854T

EPI_ISL_467443
 2020-03-25 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0041/2020
 ATTAAAG1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_467666
 2020-03-25 2020-06-15
 Mongolia hCoV-19/Mongolia/Imp3989/2020
 A1TTCCACTTGACTCGGACCATCTAGCGACCTCCACTTGACTCGGACCATCTAGCGACCTCCACACGACCATCTAGCGACCTCCACCSGACCATCTAGCGACCTCCACA C241T C3037T G6236K C6395T C6797T C11094T T14067C C14408T G14948K T17305Y T20859W G21881T A23403G G25423T G25447T A25491C A26530G T27013A C27015TGGAGGG A27019G AATCAC27023- A27486T AA27520GG C29272T

EPI_ISL_468015
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP243/2020
 ATT1- G374A C8782T C17747T A17858G C18060T C21952T T28144C

EPI_ISL_468018
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP269/2020
 C4540T C8782T T9477A C14805T C17825T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_468021
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP289/2020
 ATTAAA1- G11083T C14805T G26144T C26606T G28842T

EPI_ISL_468022
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP263/2020
 G2875T C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_468023
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP242/2020
 AT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_468028
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP256/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27128T

EPI_ISL_468029
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP273/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_468030
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP294/2020
 C4540T C8782T T9477A C14805T T21571G G25979T T28144C C28311T C28657T G28803A C28863T

EPI_ISL_468033
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP237/2020
 C222- C4540T C8782T T9477A C13105T C13499T C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_468034
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP293/2020
 AT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_468042
 2020-03-25 2020-06-16
 Australia hCoV-19/Australia/SAP270/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_468404 MT628140
 2020-03-25 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1434/2020
 A1- C241T C1059T C3037T C14408T T19570W A23403G C24381Y G25563T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_468405 MT628141
 2020-03-25 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1435/2020
 C241T C379A C1059T C3037T C14408T A23403G G25012A G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468406 MT628142
 2020-03-25 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1436/2020
 T17W C241T C1059T C2536T C3037T C14408T G16852T A23403G G25563T T25679K C27964T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468520 MT628243
 2020-03-25 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1590/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27528W

EPI_ISL_468728
 2020-03-25 2020-06-17
 Belgium hCoV-19/Belgium/UGent-77/2020
 T514C ATG1605- G14622T C17410T T18723C G24620T

EPI_ISL_470865
 2020-03-25 2020-06-19
 Australia hCoV-19/Australia/WA48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T C23996Y G25979T T28144C C28311T C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_470867
 2020-03-25 2020-06-19
 Australia hCoV-19/Australia/WA50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471202
 2020-03-25 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471212
 2020-03-25 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471973
 2020-03-25 2020-06-23
 United Kingdom hCoV-19/England/EXET-1373E8/2020
 C241T C3037T C14408T A23403G G29737A

EPI_ISL_475105
 2020-03-25 2020-06-23
 Sweden hCoV-19/Sweden/20-08498/2020
 C241T C1059T C3037T A14246G C14408T A23403G G24368T G25563T T25646C

EPI_ISL_475106
 2020-03-25 2020-06-23
 Sweden hCoV-19/Sweden/20-08504/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_475107
 2020-03-25 2020-06-23
 Sweden hCoV-19/Sweden/20-08505/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_475627
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC18/2020
 C241T C3037T C14408T C18877T G20134T A23403G G25563T

EPI_ISL_475628
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC19/2020
 C241T C1059T C3037T G6713A G10481A C14408T A23403G G25563T

EPI_ISL_475630
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC20/2020
 A223T C1929T C8782T C9661T C17747T A17858G C18060T C26408T T28144C TT29726-

EPI_ISL_475631
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC21/2020
 C241T C1059T C3037T G11143A C14408T C15774T C21575T A23403G A24612G G25563T A28492T

EPI_ISL_475632
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC22/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475633
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC23/2020
 C241T C3037T C14408T A23403G

EPI_ISL_475634
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC24/2020
 C241T C313T C3037T T4747C A9187G G10481A C12005G C14408T T16001A A23403G GGG28881AAC

EPI_ISL_475635
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC25/2020
 

EPI_ISL_475636
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC26/2020
 

EPI_ISL_475638
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC28/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T C29769T

EPI_ISL_475639
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC29/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29253T

EPI_ISL_475641
 2020-03-25 2020-06-23
 United States hCoV-19/USA/CA-CSMC30/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_475717 MT655131
 2020-03-25 2020-06-23
 Spain SARS-CoV-2/human/ESP/HUD-70065612/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18348T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_475719 MT655133
 2020-03-25 2020-06-23
 Spain SARS-CoV-2/human/ESP/HUD-70063452/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_475720 MT655134
 2020-03-25 2020-06-23
 Spain SARS-CoV-2/human/ESP/HUD-96195073/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_475816
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475834
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8296Y C14408T T22119C A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475840
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4201T C14408T A23403G C26527T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475847
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1426T C3037T C14408T G15957T C18877T A23403G G24197T G25563T C26735T T29619A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475849
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G T25414C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475859
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6469C C14408T C14790Y A21062G A23403G C27881T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475869
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475875
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27813T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475876
 2020-03-25 2020-06-25
 Austria hCoV-19/Austria/CeMM0468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C21396T A23403G G26754T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476022
 2020-03-25 2020-06-25
 India hCoV-19/India/DRDE08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C6312A C23929T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476768
 2020-03-25 2020-06-25
 United States hCoV-19/USA/CA-CZB-1751/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_476820
 2020-03-25 2020-06-26
 Singapore hCoV-19/Singapore/486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8802T C9491T C10755T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476826
 2020-03-25 2020-06-26
 Benin hCoV-19/Benin/1022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096Y C12049T C14408T C14786T C15324T A20597R A23403G T28144Y G28167R TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_477619
 2020-03-25 2020-06-29
 Hungary hCoV-19/Hungary/US-2823w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28486T G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477703
 2020-03-25 2020-06-29
 United States hCoV-19/USA/WA-UW-2066/2020
 ATTAAAGGTTTA1- A31T AAC34TTT C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_477704
 2020-03-25 2020-06-29
 United States hCoV-19/USA/WA-UW-2076/2020
 ATTAAAGGTTTAT1- C36T C2065T C8782T C17747T A17858G C18060T T23010C T28144C G29868R C29870A

EPI_ISL_478576
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/NORT-284A5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C11767T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478577
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/NORT-284A9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T G28655A C28657T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478578
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/NORT-284B4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478579
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/NORT-284B5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479177
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D12D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479183
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D133A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A7981G C10507T C13019T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479184
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D1349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T C19862T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479185
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D1358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18508T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479188
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D1385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5340T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479191
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D13B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479194
 2020-03-25 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D13FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479634
 2020-03-25 2020-07-01
 Canada hCoV-19/Canada/NB-218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2210T C3037T C3792T C6255T T6564C C14408T G18811A A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479635
 2020-03-25 2020-07-01
 Canada hCoV-19/Canada/NB-219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11109T C14408T A23403G G25563T C29364T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479636
 2020-03-25 2020-07-01
 Canada hCoV-19/Canada/NB-220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T10771C C17747T A17858G C18060T T28144C ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479638
 2020-03-25 2020-07-01
 Canada hCoV-19/Canada/NB-222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1957T C3037T G10265A C14408T A23403G GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479645
 2020-03-25 2020-07-01
 Canada hCoV-19/Canada/NB-232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A7535G C8782T T10771C C17747T A17858G C18060T T28144C C29375T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479647
 2020-03-25 2020-07-01
 Canada hCoV-19/Canada/NB-234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T C21682T A23403G G25906T GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479651
 2020-03-25 2020-07-01
 Canada hCoV-19/Canada/NB-238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C289T C1059T C3037T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479671 MT679205
 2020-03-25 2020-06-29
 United States SARS-CoV-2/human/USA/NYU-VC-017/2020
 C241T C1059T C1150T C3037T C14408T A23403G G25563T

EPI_ISL_479968
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479969
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479970
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479991
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C3037T C14408T A23403G G25563T G26730T C29708T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480038
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480039
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480040
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C2902T C3037T C6151A C14408T A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_480083
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T G26713T T28144C C29739T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480084
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G3179A C6982T C8782T G26713T T28144C C29739T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480178
 2020-03-25 2020-07-01
 Japan hCoV-19/Japan/PG-0520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_482314
 2020-03-25 2020-07-03
 United States hCoV-19/USA/OR-PROV-031/2020
 C241T C3037T A8445G C14220T C14408T A20268G A23403G

EPI_ISL_482315
 2020-03-25 2020-07-03
 United States hCoV-19/USA/OR-PROV-032/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_482316
 2020-03-25 2020-07-03
 United States hCoV-19/USA/OR-PROV-033/2020
 A4236G G11083T C14805T T25655C G26144T

EPI_ISL_482333
 2020-03-25 2020-07-03
 United States hCoV-19/USA/OR-PROV-053/2020
 A2480G C2558T G11083T C14805T G26144T C27012T

EPI_ISL_482462
 2020-03-25 2020-07-03
 United States hCoV-19/USA/OR-PROV-227/2020
 A4236G G11083T C14805T T25655C G26144T

EPI_ISL_482465
 2020-03-25 2020-07-03
 United States hCoV-19/USA/OR-PROV-230/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_482585
 2020-03-25 2020-07-04
 China hCoV-19/Hangzhou/HZCDC7363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482586
 2020-03-25 2020-07-04
 China hCoV-19/Hangzhou/HZCDC7378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T C28977T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_484005
 2020-03-25 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265D730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1678G C3096T G11083T G13627T C14805T C15540T G26144T A28338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484714
 2020-03-25 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25976A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485392
 2020-03-25 2020-07-09
 South Korea hCoV-19/South Korea/S1/2020
 ATTAAAGGTT1- A2480G C2558T G11083T C14805T C20099T G26144T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_485947
 2020-03-25 2020-07-10
 United States hCoV-19/USA/ID-UW-3036/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T T833C C1059T C3037T C13730T C14408T G22363T A23403G G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_486436
 2020-03-25 2020-07-10
 Latvia hCoV-19/Latvia/052/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_487673
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T6585Y G11083T C14805T C18400Y C18512T C24704Y G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487685
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488471
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-281FCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22225T A23403G T25202K C29535T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488478
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-282365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16705T C22323T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488483
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-284A6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7072T A8072G T10057C C14408T C16329T C17762T G19669A A23403G C27323T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488518
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-282329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C4455Y C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488536
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-28224A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14919Y A20268G A23403G A25056R C28854T G29737A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488575
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-2822C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC A29031M CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488626
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-282110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2585R G11083T C14805T G16206T G16861K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488657
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-284A13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G7393T A10323G G11083T C14805T T17247C T25202K G26144T C28377T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488666
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-28498F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488675
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-284B89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4886T G10097A C14408T G22801T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488731
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-28207D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C20270T C21767T T25202K A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488739
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-28213E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489663
 2020-03-25 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-170714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490316
 2020-03-25 2020-07-15
 Peru hCoV-19/Peru/INS-017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C18877T A23403G G25563T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_490975
 2020-03-25 2020-07-15
 Peru hCoV-18/Peru/INS-018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C593T G2354A C3037T C14408T G15202T T22288A A23403G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_490984
 2020-03-25 2020-07-15
 United States hCoV-19/USA/CT-UW-3425/2020
 ATTAAAGGTTTAT1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C1917T C3037T C14408T C20405T A23403G G25563T TG29867AA C29870A

EPI_ISL_490994
 2020-03-25 2020-07-15
 United States hCoV-19/USA/ID-UW-3335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T833C C1059T C3037T G13435A C14408T A23403G G25563T C27964T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490995
 2020-03-25 2020-07-15
 United States hCoV-19/USA/ID-UW-3416/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AAC34TTT C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_490996
 2020-03-25 2020-07-15
 United States hCoV-19/USA/ID-UW-3481/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T G2840A C8782T C13255T C17747T A17858G C18060T C24034T A26045G C27964T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_491001
 2020-03-25 2020-07-15
 United States hCoV-19/USA/OR-UW-3406/2020
 ATTAAAG1- C36T C241T C1059T C1063T C3037T C14408T G19106A A23403G G25563T C29870M

EPI_ISL_491102
 2020-03-25 2020-07-15
 United States hCoV-19/USA/SC-DHEC-0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAA1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_491427
 2020-03-25 2020-07-16
 Peru hCoV-19/Peru/INS-021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C8782T C17747T A17858G C18060T C18400T A24694T T25837Y T28144C ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491429
 2020-03-25 2020-07-16
 Peru hCoV-19/Peru/INS-024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C8782T T9477A A10323G C14805T G25979T T28144C C28657T C28863T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491457
 2020-03-25 2020-07-17
 Costa Rica hCoV-19/Costa Rica/INC-0046/2020
 ATTAAAGGTTTATACCTTCCCAG1- A27C C241T C1059T C3037T A3254T C4113T C11916T C14408T C18998T A23403G G25563T G29540A CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_491911 MT776405
 2020-03-25 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G C24989S G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491912 MT776406
 2020-03-25 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491913 MT776407
 2020-03-25 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C6582T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494611
 2020-03-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1451/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_494613
 2020-03-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T C6027A C14408T A23403G G25563T

EPI_ISL_494716
 2020-03-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1651/2020
 ATTAAA1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_494723
 2020-03-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_494740
 2020-03-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1682/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_494743
 2020-03-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1685/2020
 ATTAAAG1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_494744
 2020-03-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1687/2020
 ATTAAAGGT1- C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_495371 MT791907
 2020-03-25 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0465/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_495612
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A2480G C2558T C10908T G11083T C14805T G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_495615
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1316/2020
 ATTAAAGG1- C241T C3037T C14408T A20268G A23403G G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_495617
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C36T C241T C3037T C14408T A20268G A23403G G24368T C27739T G29736- GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_495618
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1319/2020
 AT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_495620
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C7139T G11083T C14805T G26144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495621
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1322/2020
 ATTA1- C241T C1059T C3037T C3817T C14408T T19527C A23403G G25563T C27964T C28099T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_495622
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_495623
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T A7535G C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_495625
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G17259T A20755C C21005T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495626
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T C21614T A24694T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_495627
 2020-03-25 2020-07-23
 United States hCoV-19/USA/MN-MDH-1328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856C

EPI_ISL_496373
 2020-03-25 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1712/2020
 ATTA1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_496924
 2020-03-25 2020-07-24
 United States hCoV-19/USA/MN-MDH-1338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T T26011C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_496925
 2020-03-25 2020-07-24
 United States hCoV-19/USA/MN-MDH-1339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC A29154T C29614T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_496926
 2020-03-25 2020-07-24
 United States hCoV-19/USA/MN-MDH-1340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A38G C241T C313T C3037T C14408T A23403G GGG28881AAC A29154T C29614T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_496927
 2020-03-25 2020-07-24
 United States hCoV-19/USA/MN-MDH-1341/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498152
 2020-03-25 2020-07-26
 Colombia hCoV-19/Colombia/87968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17181C C18747T C18877T G22992T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498154
 2020-03-25 2020-07-26
 Colombia hCoV-19/Colombia/88496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T23443C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498155
 2020-03-25 2020-07-26
 Colombia hCoV-19/Colombia/88612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500502
 2020-03-25 2020-07-29
 United States hCoV-19/USA/CT-UW-3488/2020
 ATTAAAGGTTTATAC1- CCCAGGTAACAAACCAA19- C36T AAGTCATTT686- C10030T A10323G -11075TTT G11083T C14805T C16466T T17247C C19854T G26144T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_501184
 2020-03-25 2020-07-31
 Malaysia hCoV-19/Malaysia/1399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501185
 2020-03-25 2020-07-31
 Malaysia hCoV-19/Malaysia/1497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G6446A C14408T C23277T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501186
 2020-03-25 2020-07-31
 Malaysia hCoV-19/Malaysia/1713/2020
 ATTAAAGGTTTATACC1- G23A A29G C6312A T7621C G11083T C13730T G18756A C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501187
 2020-03-25 2020-07-31
 Malaysia hCoV-19/Malaysia/1798/2020
 ATTA1- G1135T C8090T C14636T G20438A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501565
 2020-03-25 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130FEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C18486T G25726T G29032A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501590
 2020-03-25 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130F90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501595
 2020-03-25 2020-07-31
 United Kingdom hCoV-19/England/BRIS-130F72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C12025T C14408T A23403G C25528T A27738C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506974
 2020-03-25 2020-08-02
 South Korea hCoV-19/Korea/KCDC2180/2020
 ATT1- C4320A C6312A G11083T C13730T C23929T C28311T

EPI_ISL_506975
 2020-03-25 2020-08-02
 South Korea hCoV-19/Korea/KCDC2181/2020
 ATTAAA1- G5572T G11083T G13564T C14805T G15708T G26144T

EPI_ISL_507025 MT820483
 2020-03-25 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T C18877T A23403G G25563T C26735T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507070
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_507071
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6406T C14408T A23403G C25771T C26534T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_507072
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T A3933C G11083T C14805T G26144T C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507142
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T T17568C A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507143
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507146
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T A12286G C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507147
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507148
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D24AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G9479T G11083T C14805T C16646T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507149
 2020-03-25 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D24BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507690
 2020-03-25 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C20436Y A23403G G25563T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_507695
 2020-03-25 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C2773T C3037T A5011M C14408T G19800A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507717
 2020-03-25 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21463/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507914
 2020-03-25 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507925
 2020-03-25 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3264T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_508884
 2020-03-25 2020-08-04
 France hCoV-19/France/ARA14226/2020
 ATTAAAG1- C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508911
 2020-03-25 2020-08-04
 France hCoV-19/France/PACA01926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C344T A618G C3037T C4901T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508986
 2020-03-25 2020-08-04
 France hCoV-19/France/ARA13746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C12171T C14408T A23403G G25563T G27289T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509009
 2020-03-25 2020-08-04
 France hCoV-19/France/ARA16647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_509738 MT846442
 2020-03-25 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0680/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C18877T C21727T A23403G G25563T G27987T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509739 MT846443
 2020-03-25 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0681/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C18877T C21727T A23403G G25563T G27987T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_509742 MT846446
 2020-03-25 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0684/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T A28885G AAA29901-

EPI_ISL_510932
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT0673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3653T C14408T C21242T GCTTTA22289- A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510937
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT0678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7604T G13617T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510939
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT0680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G922A C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510941
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT0682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G922A C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510976
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT0717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511025
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT0766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511310
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511311
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTA1- C241T C3037T C4832T C14408T A23403G GGG28881AAC C29205T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511312
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511313
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C241T AAGTCATTT686- C3037T C3140T T4033C C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511314
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTA1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511316
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G17259A A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511331
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2399T C3037T C14408T A23403G C27509T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511332
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2399T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511333
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511334
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T G26144T C26895T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511366
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C13329T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511369
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511371
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C3140T C13059T C14408T G21641A A23403G G24077T C29555T G29742T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511386
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511401
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511403
 2020-03-25 2020-08-07
 Portugal hCoV-19/Portugal/PT1444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18526T A23403G GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511513
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT0964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T C19884T A23403G G26792T C26892T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511514
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT0965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4090T G10265A C14408T A15972G C17934T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511515
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT0966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3045T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511551
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT1004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511727
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT1182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T G22468T T28144C G28878A G29742A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511728
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT1183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511729
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT1184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511730
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT1185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C26340T GGG28881AAC A29391G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511770
 2020-03-25 2020-08-08
 Portugal hCoV-19/Portugal/PT1227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G23311T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512801 MT873898
 2020-03-25 2020-08-11
 United States SARS-CoV-2/human/USA/FL-USAFSAM-S033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C2416T C3037T T12112C C14408T G21974C A23403G G25563T G26233T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514645 MT892992
 2020-03-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1426/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C18877T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514646 MT892993
 2020-03-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1427/2020
 A1- C8782T C17747T A17858G C18060T A24694T C25549T T28144C G28812T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514647 MT892994
 2020-03-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514658 MT893005
 2020-03-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C14408T C14925T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514659 MT893006
 2020-03-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1440/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C5907T C14408T A23403G G25563T G29773T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514660 MT893007
 2020-03-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G114A C241T T833C C1059T C3037T T12118C C14408T A23403G G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514662 MT893009
 2020-03-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1443/2020
 ATTA1- A2480G C2558T C10908T G11083T C14805T G26144T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_515333
 2020-03-25 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0051/2020
 ATTAAA1- C8782T C17747T A17858G C18060T G24815C T28144C

EPI_ISL_515528
 2020-03-25 2020-08-19
 Brazil hCoV-19/Brazil/SP-625/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515550
 2020-03-25 2020-08-19
 Brazil hCoV-19/Brazil/SP-636/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T A4664M C14408T A23403G T27299C GGG28881AAC T29148C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861T

EPI_ISL_515900
 2020-03-25 2020-08-20
 United States hCoV-19/USA/CA-CDPH007/2020
 ATTA1- G18043A G29711T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_515905
 2020-03-25 2020-08-20
 United States hCoV-19/USA/CA-CDPH012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G10793T C14408T C18877T A23403G G25563T G25660C T26966Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516805
 2020-03-25 2020-08-24
 Singapore hCoV-19/Singapore/833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517251
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C5512T C10507T

EPI_ISL_517252
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350T

EPI_ISL_517253
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C4668T G24197A

EPI_ISL_517254
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G21624T A23403G GGG28881AAC C29870A

EPI_ISL_517255
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G A26530R G28739T C29095T

EPI_ISL_517256
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G16741A C17104T A20268G A23403G G29734C

EPI_ISL_517259
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A90CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC C29870A

EPI_ISL_517262
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C875A C2416T C3037T T4885C G9479K C10448Y C14408T C14786T G20578T A23403G G25563T

EPI_ISL_517263
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G T25679A

EPI_ISL_517264
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A11755G C14408T A23403G C27046T GGG28881AAC

EPI_ISL_517266
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G13564T C14408T C17746Y A23403G C29870A

EPI_ISL_517267
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R C4668T G24197A C29870A

EPI_ISL_517269
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A917F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G G28960T

EPI_ISL_517273
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A91BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_517275
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A91E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G G5539T C9223T G11083T G14131A C14805T T17247C G26144T C29870A

EPI_ISL_517276
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A91F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T T13006Y C14408T C19186T A23403G G25563T C25688T C29870A

EPI_ISL_517278
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T C14408T G20578T T23119C A23403G G25563T

EPI_ISL_517279
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15237Y A23403G GGG28881AAC

EPI_ISL_517281
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A924F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G94K C241T C3037T C14408T C18877Y A23403G G25563K GGG28881RRS C28887Y C29870A

EPI_ISL_517286
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A929A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC C29870A

EPI_ISL_517287
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A92A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C884T C3037T G10097A C14408T G21305A A23403G C23731T C27513T GGG28881AAC C29870A

EPI_ISL_517292
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A92F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1385T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_517293
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C4893T C20270T A29683T C29870A

EPI_ISL_517301
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A99A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8318T G10097A C14408T A23403G C23731T C24387T T26073C G28580T GGG28881AAC

EPI_ISL_517305
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A99E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T17169Y C18877T A23403G G25563T

EPI_ISL_517311
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9A47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517318
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9AB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- A10982G C22295Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517331
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9B9F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T C3037T C12138T C14408T A23403G GGG28881AAC

EPI_ISL_517335
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9BEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1440A G2891R G8785A

EPI_ISL_517339
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9C23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T C3037T C12138T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517346
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9C9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15763T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_517351
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9CE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T C3037T C12138T C14408T A23403G GGG28881AAC

EPI_ISL_517357
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9D4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T C14805T G26144T

EPI_ISL_517368
 2020-03-25 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9E1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T A8842G G11083T C14805T G26144T C26994T G29414A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_518864 MT920003
 2020-03-25 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G5816A C14408T A23403G C25521T G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_518872 MT920011
 2020-03-25 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518873 MT920012
 2020-03-25 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T5707C C14408T A20268G A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518896 MT920036
 2020-03-25 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C6120T G12038A C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518897 MT920037
 2020-03-25 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1504/2020
 ATT1- A38R C241T C1059T C3037T C14408T T19527C A19821G G22346T A23403G G25563T C27964T C28099T C29722T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518898 MT920038
 2020-03-25 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T T15354C C18877T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_523938
 2020-03-25 2020-08-27
 Germany hCoV-19/Germany/NW-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A15596G C19547T C27625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523942
 2020-03-25 2020-08-27
 Germany hCoV-19/Germany/NW-71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523971
 2020-03-25 2020-08-27
 Brazil hCoV-19/Brazil/SP-174/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T A23403G G25088T C25820T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_523982
 2020-03-25 2020-08-27
 Brazil hCoV-19/Brazil/SP-190/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_525633
 2020-03-25 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-30673-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C7105T C14408T T15264C A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527876
 2020-03-25 2020-09-05
 Nigeria hCoV-19/Nigeria/ED04-CV158/2020
 ATTAAA1- C8782T G11230T T28144C G28167A G28878A G29742A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_529219
 2020-03-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61B57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C5826T C8090T C10789T T14298C C17439T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529220
 2020-03-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61BB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G G5629T C5826T C8090T C10789T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529598
 2020-03-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61B39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529601
 2020-03-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61BFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529603
 2020-03-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61C45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T G28396A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529607
 2020-03-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61D51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1305C C3037T C10626T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529611
 2020-03-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61E12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC C29466T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530046
 2020-03-25 2020-09-10
 Spain hCoV-19/Spain/MD-LP42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530241
 2020-03-25 2020-09-11
 Australia hCoV-19/Australia/QLD962/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C13730T C14408T A23403G G25429T

EPI_ISL_530242
 2020-03-25 2020-09-11
 Australia hCoV-19/Australia/QLD960/2020/P1
 ATTAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_530268
 2020-03-25 2020-09-11
 Australia hCoV-19/Australia/QLD988/2020/P1
 ATT1- C1670T C8782T C17747T A17858G C18060T C23430T T28144C AAA29901-

EPI_ISL_534813
 2020-03-25 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2D7F/2020
 A1515G C9223T C10277T G11083T C14805T T17247C G26144T

EPI_ISL_534855
 2020-03-25 2020-09-14
 United Kingdom hCoV-19/England/OXON-B339A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- T137K C241T C3037T C14408T G15646K A23403G G24781T GGG28881AAC AA29890RR AAAAAAAAAA29894-

EPI_ISL_534906
 2020-03-25 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3BCF/2020
 ATTAAAGGTTTATAC1- C241T C3037T C7834T C14408T G21724T A23403G GGG28881AAC A29903-

EPI_ISL_536141
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T C17104Y A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_536142
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236598/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536145
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C10615T C14408T C20480Y A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536146
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236657/2020
 ATTAAAGGTTTATACC1- A2480G C2558T C3096T A3706R C9170T G11083T C14805T G26144T A28207T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536148
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236781/2020
 ATTAAA1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T A28207T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536150
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236805/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536151
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236905/2020
 ATTAAAGGTTTATACC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T C26456Y G28361A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536152
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C8208T G9267A T9667C G13514A C14408T A23403G G25947T T28114C G28361A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536153
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C8208T G9267A T9667C C14408T C15324T A23403G G25947T G28361A GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536154
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00236943/2020
 AT1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536157
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237011/2020
 ATTAA1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536158
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237078/2020
 A1- C241T C2416T C3037T C5055T C14408T G19292T A23403G G25538T G25563T C26681Y GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536159
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T C15324T A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536160
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237091/2020
 A1- C241T C2416T C3037T C5055T C14408T G19292T A23403G G25538T G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536163
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237109/2020
 ATTAAAGGTTT1- C241T C1059T C1387T C3037T C14408T A20755C C20936T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536166
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237135/2020
 A1- C241T C2416T C3037T C5055T C8814Y C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536168
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237217/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536169
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A20268G A23403G C28854T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536171
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T C15579Y A19376R A23403G G25217T G25563T G28487S C29835T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536173
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C15324T A23403G A23572R TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536174
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237340/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536176
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T AAGTCATTT686- C3037T C14408T A20268G A23403G C26313T C28253T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536178
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T C3096T C9170T G11083T C14805T G26144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536179
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237374/2020
 ATTAAAGGT1- C241T AAGTCATTT686- C3037T C14408T A20268G A23403G C26313T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536180
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237419/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C15324T A23403G C25433T G27750S GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536181
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T A2018G C3037T C11396T C14408T T21995C A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536182
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C15324T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536183
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237503/2020
 ATTAAAGGTTTAT1- C241T G662T C3037T C14408T C15324T A23403G C25433T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536186
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A2480G C2558T G11083T C14805T G26144T G28086R T28088W G29742T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536187
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237589/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T AAGTCATTT686- C1059T A2419G G2808A C3037T C14408T A23403G G25563T A26433G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536195
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A264W C3037T C6037T C14408T C15324T A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536196
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C6037T C14408T C15324T A23403G C25433T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536198
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G A25897T G25947T G28361A GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536200
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237930/2020
 ATTAAA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536201
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536202
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00237972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C6031A C14408T C19901T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536207
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238342/2020
 ATTAAAG1- G11083T C14805T T17247C G17721T G26144T

EPI_ISL_536208
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238445/2020
 ATTA1- C241T C1059T C2507T C3037T C14408T A23403G C23718T G25563T G28368A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536209
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C4999Y C14408T A23403G G25563T C29109A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536260
 2020-03-25 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239991/2020
 ATTAAAG1- C241T C3037T C14408T G14874T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536399
 2020-03-25 2020-09-15
 Colombia hCoV-19/Colombia/ANT-UdeA-200325-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536789
 2020-03-25 2020-09-16
 New Zealand hCoV-19/New Zealand/20VR1765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G A29731G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538321
 2020-03-25 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C14805T T17247C G26144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538322
 2020-03-25 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18877T A23403G G25563T T27922Y TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538324
 2020-03-25 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A5560G C14408T C22550T A23403G C27046T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538325
 2020-03-25 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C5055T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538455
 2020-03-25 2020-09-17
 Singapore hCoV-19/Singapore/924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14645T C14768T A23403G G25429T C28045T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538456
 2020-03-25 2020-09-17
 Singapore hCoV-19/Singapore/925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T A7161G C8782T T18736C G19684T C24034T A24652T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538457
 2020-03-25 2020-09-17
 Singapore hCoV-19/Singapore/323nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10833T A13631G C19961A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538934
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y C3037Y G10097R G11083K C11300Y C14408Y C14805Y T17247Y A23403R C23731Y G26144K G28580K A28761W GGG28881RRS CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538971
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8964T G10097A T13216G C14408T C18486T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539008
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8CE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14025T C14408T C18877T A23403G G24197T G25563T G26158T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539032
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A884C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539064
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C5826T C8090T C10789T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539109
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8A64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8140Y C14408T C17104T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539127
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8C13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T T7375C G11083T C14805T C21952T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539153
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A86E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539156
 2020-03-25 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539305
 2020-03-25 2020-09-17
 Netherlands hCoV-19/env/Netherlands/UT-92503-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T9477A C14408T A16061C G25273T A25575C C27128T T28144C GGG28881AAC TCAGCGTTCTTCGGAATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCATATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGCTGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29207-

EPI_ISL_539307
 2020-03-25 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92508-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G4720T C14408T A23403G CAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29550-

EPI_ISL_539315
 2020-03-25 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NB-92499-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C19586T A23403G A24862G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_539316
 2020-03-25 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92506-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C18998T A23403G C24159T AAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29551-

EPI_ISL_539322
 2020-03-25 2020-09-17
 Netherlands hCoV-19/env/Netherlands/UT-92504-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T13210A G13214T C14408T A23403G CAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29550-

EPI_ISL_539324
 2020-03-25 2020-09-17
 Netherlands hCoV-19/env/Netherlands/UT-92505-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1191T C14408T C18029T G26144T CAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29550-

EPI_ISL_539850
 2020-03-25 2020-09-21
 China hCoV-19/Hong Kong/VM20005737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_541777
 2020-03-25 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286E5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548348
 2020-03-25 2020-09-26
 United States hCoV-19/USA/CA-CZB-3642/2020
 AT1-Y C241T C1059T C3037T A8116G C11916T C14408T C18998T A23403G G25563T G29540A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549011
 2020-03-25 2020-09-28
 Netherlands hCoV-19/env/Netherlands/GE-92502-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- ATG1605- G2144A C4391T C8290T C15495A AGCGTTCTTCGGAATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCATATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGCTGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29209-

EPI_ISL_549012
 2020-03-25 2020-09-28
 Netherlands hCoV-19/env/Netherlands/NB-92509-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G3521T G5230T G7577T G11161T G13242T C17410T G18838T G19086T A23403G CAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29550-

EPI_ISL_549013
 2020-03-25 2020-09-28
 Netherlands hCoV-19/env/Netherlands/NH-92506-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTG1- C241T T21140C G21142T A23403G ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_560574
 2020-03-25 2020-09-29
 France hCoV-19/France/CVL8278/2020
 ATTAAAGGTTTATACCTTCCC1- C28T C36T C241T C3037T C14408T C21233T A23403G A23691G C24621T GGG28881AAC C29743A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_560577
 2020-03-25 2020-09-29
 France hCoV-19/France/CVL8287/2020
 ATTAAAGGTTTATACCTTCCC1- A26- C28T C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T C28606T G29414T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_560581
 2020-03-25 2020-09-29
 France hCoV-19/France/GE8500/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_560626
 2020-03-25 2020-09-29
 France hCoV-19/France/GE8786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G331T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565958
 2020-03-25 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T C29218Y TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

MT457403
 2020-03-25 2020-05-12
 India SARS-CoV-2/human/IND/GMC-RR1191/2020
 ATTAAAGGTTT1- C6312A G11083T C13730T C23929T C28311T C29733Y G29868R C29870A

MT477852
 2020-03-25 2020-05-14
 United States SARS-CoV-2/human/USA/AK115/2020
 ATTAAAGGTTT1- C241T C3037T G8600T C14408T A23403G C25350T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT477885
 2020-03-25 2020-05-18
 India SARS-CoV-2/human/IND/OUMRK1090/2020
 ATTA1- C6312A G11083T C13730T C23929T C28311T C29870A

MT670022
 2020-03-25 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-31600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT671810
 2020-03-25 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1751/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT706148
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706149
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C9113T T18736C C21648T C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706152
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706157
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706159
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706162
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6884T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706169
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6884T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706170
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706171
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706183
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706188
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706193
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706202
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706203
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706204
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T T27447C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706238
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706284
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T334C C3037T C3373A C14408T C19454T T23155C A23403G C24795T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706329
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706330
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706331
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10519T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706332
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C A16984G C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706333
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C A16984G C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706334
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C875T A9848G C29013T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706336
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706337
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C29415T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706339
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C29347T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706340
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G25244T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706341
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G6341A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706342
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706343
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706344
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A9496G C9520T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706345
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706346
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706347
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706348
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706349
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A27474G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706350
 2020-03-25 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT764177
 2020-03-25 2020-07-15
 United States SARS-CoV-2/human/USA/COVID20-0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAA1- T490A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT810521
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1651-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810528
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1662-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810545
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1682-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810548
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1685-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810549
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1687-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810786
 2020-03-25 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1712-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810829
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1451-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810831
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1453-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T C6027A C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810917
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0179-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T G22487C A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810923
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0187-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18814T TTTGGGTGTTTA21982- A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810964
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0259-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1917T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811019
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0413-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811173
 2020-03-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0115-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

NMDC60013227
 2020-03-25 2020-06-01
 China hCoV-19/Guangzhou/ID036/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C313T C3037T G6530C C14408T G14829T A23403G G25563T T28066C C29708T G29868A

NMDC60013248
 2020-03-25 2020-06-01
 China hCoV-19/Guangzhou/ID076/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T T12436A G22468T G25563T C25904T T28144C G29742A TG29867YC

EPI_ISL_420162
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0831/2020
 C241T C3037T T9429C C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420223
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0716/2020
 C241T C3037T C14408T C15752T C17430T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_420224
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0594/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420229
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C01CD/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420241
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0637/2020
 C241T C2937T C3037T C10605T T11314C C14408T A20268G A23403G

EPI_ISL_420242
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0734/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_420244
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C05B2/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420249
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0549/2020
 A2480G C2558T C8078T C8917T G11083T C14805T G26144T G28378T

EPI_ISL_420716
 2020-03-26 2020-04-06
 United Kingdom hCoV-19/England/20139056904/2020
 C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC

EPI_ISL_420847
 2020-03-26 2020-04-07
 Democratic Republic of the Congo hCoV-19/DRC/431/2020
 AT1- C241T C3037T C14408T G14773A C15324T A23403G C25433T ATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29792-

EPI_ISL_421288
 2020-03-26 2020-04-07
 United States hCoV-19/USA/WI-UW-30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G20752T A23403G G25563T C28677T T28930C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421292
 2020-03-26 2020-04-07
 United States hCoV-19/USA/WI-UW-34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A C16428T T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421333
 2020-03-26 2020-04-07
 United States hCoV-19/USA/WI-UW-75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421636
 2020-03-26 2020-04-09
 Australia hCoV-19/Australia/NSWID930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C10851T C14408T C14724T C15763T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_421787
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/201361012/2020
 ATG1605- T3931C G11083T C26833T

EPI_ISL_421794
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/201380024/2020
 A2480G C2558T A10323G G11083T C14805T C18652T G21941K G26144T

EPI_ISL_421797
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/201380030/2020
 C241T C3037T C14408T G21204T A23403G GGG28881AAC

EPI_ISL_421801
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/201380037/2020
 C241T C3037T GT5743SY C14408T G21204T A23403G GGG28881AAC

EPI_ISL_421803
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/201380041/2020
 C241T C3037T C14408T A23403G C28377T GGG28881AAC

EPI_ISL_421805
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/201380044/2020
 C583T A700G A2480G C2558T C7279T G11083T C14805T A15405G G26144T C27331T

EPI_ISL_421847
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20138088204/2020
 C241T C3037T T6469C A9436T C14408T T20103W A23403G G25429T

EPI_ISL_421862
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139008204/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_421875
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139011304/2020
 A2480G C2558T C4084T G11083T C14805T G25494T G26144T A26319T

EPI_ISL_421880
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139021104/2020
 G6101A C9969Y G11083T C14805T C16949Y T22032Y C23707T G26144T C26753Y

EPI_ISL_421900
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139027004/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_421904
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139027404/2020
 C241T C3037T C14408T T22499Y A23403G GGG28881AAC

EPI_ISL_421907
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139027904/2020
 C241T C3037T C14408T A20268G C23121Y A23403G

EPI_ISL_421909
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139029104/2020
 C583T A700G A2480G C2558T C7279T G11083T C14805T A15405G A21137R G26144T C27331T

EPI_ISL_421910
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139029304/2020
 C241T G11083T C14805T T17247C T22384C G26144T T29726-

EPI_ISL_421911
 2020-03-26 2020-04-09
 United Kingdom hCoV-19/England/20139029404/2020
 C241T G11083T C14805T T17247C G26144T T29726-

EPI_ISL_422038
 2020-03-26 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2621D/2020
 C241T C3037T C14408T A23403G

EPI_ISL_422104
 2020-03-26 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26022/2020
 A1- G1440A G2891A C25669T G28851T

EPI_ISL_422111
 2020-03-26 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-260C8/2020
 ATTA1- C241T C3037T G11083T C12242T C14408T C16887T C22264T A23403G A25575C

EPI_ISL_422751 LR877903
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17626T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422753 LR877930
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422755 LR877914
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422759 LR877912
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422770 LR877959
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422942 LR877904
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G C28432T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422943 LR877892
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422944 LR877925
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17126C A20268G A23403G G25116A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422947 LR877918
 2020-03-26 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C18894T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423232
 2020-03-26 2020-04-12
 United Kingdom hCoV-19/England/201360181/2020
 A12G C241T C3037T C14408T A23403G G25429T

EPI_ISL_423263
 2020-03-26 2020-04-12
 United Kingdom hCoV-19/England/201360281/2020
 C241T C3037T C14408T C16111T A19939C A23403G GGG28881AAC

EPI_ISL_423324
 2020-03-26 2020-04-12
 United Kingdom hCoV-19/England/20138078204/2020
 A2480G C2558T C7011T G11083T G11405A C14805T C19895T G20006A G20011K G26144T C28869T G29779T

EPI_ISL_424562
 2020-03-26 2020-04-13
 Iceland hCoV-19/Iceland/542/2020
 C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_424572
 2020-03-26 2020-04-13
 Iceland hCoV-19/Iceland/552/2020
 C241T C3037T C13862T C14408T A23403G C28836T

EPI_ISL_424610
 2020-03-26 2020-04-13
 Iceland hCoV-19/Iceland/590/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_425057
 2020-03-26 2020-04-14
 Belgium hCoV-19/Belgium/UGent-17/2020
 T514C ATG1605- C17410T T18723C

EPI_ISL_425314
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/England/CAMB-745EA/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425563
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E58A/2020
 ATG1605- C4999T

EPI_ISL_425565
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E5A8/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425943
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB212/2020
 C241T C3037T C12854T C14408T A23403G C25433T

EPI_ISL_425944
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB214/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_425945
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB216/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_425947
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB219/2020
 C241T C3037T C14408T A23403G C25433T G29405A

EPI_ISL_425948
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB222/2020
 C8782T C17470T C26088T T28144C

EPI_ISL_425949
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB226/2020
 C988T G11083T C14805T T17247C G26144T C26735T C29585T

EPI_ISL_425950
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB227/2020
 C1545T A2480G C2558T G11083T G11557T C14805T G26144T C29218T

EPI_ISL_425953
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB245/2020
 C241T C3037T C14408T C16289T G16741T C17375T C18508T A23403G G25429T

EPI_ISL_425956
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB254/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_425959
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB273/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_425961
 2020-03-26 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB275/2020
 C241T C3037T C7420T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_426126 MT345834
 2020-03-26 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-2240/2020
 ATTAAAGG1- T10G A12T AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T A29903GTATGTC

EPI_ISL_426307
 2020-03-26 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-30164-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T514C ATG1605- C17410T A20379G C29732T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426308
 2020-03-26 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-30246-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426533
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG270200/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426546
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG271886/2020
 C241T C3037T G7312C C9534A C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426547
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG271888/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426548
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG271890/2020
 C241T C3037T G7312C C9534A C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426549
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG271892/2020
 C241T C1059T C3037T A8223C C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426550
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG271894/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426554
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG271902/2020
 C241T C1059T T2851C C3037T C5183T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426555
 2020-03-26 2020-04-17
 United States hCoV-19/USA/AZ-TG271922/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426752 MT451324
 2020-03-26 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC458/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_426872 MT451425
 2020-03-26 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC617/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25593C

EPI_ISL_426874 MT451436
 2020-03-26 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC630/2020
 C1076T G1397A G3564T G11083T G24933T C27964T T28688C G29742T

EPI_ISL_426890 MT517427
 2020-03-26 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_15/2020
 ATTAAAGG1- C241T C541T C1059T C3037T G3759T G11083T C14408T A23403G G25563T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426891 MT517428
 2020-03-26 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_16/2020
 ATTAAAGGTTTATACC1- C241T C3037T G3955T C14408T A23403G G25534T C27005T C27046T GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_427167 MT358709
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/ID-UW-3892/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T A4236G G11083T C14805T T25655C G26144T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427175 MT358675
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3810/2020
 AT1- C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_427177 MT358677
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3814/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C1929T C5784T C8782T C17747T A17858G C18060T C23525T G26730A T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427180 MT358680
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427181 MT358681
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C2397T C3037T C14408T A23403G G25563T C27630T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427182 MT358682
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C8782T C17747T A17858G C18060T G21255C C21575T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427187 MT358687
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3834/2020
 ATTAAA1- A31T C36T C3992T C8782T C17747T A17858G C18060T G22984A A23992T T27384C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427188 MT358688
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3838/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T A11830G C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427189 MT358689
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C14408T A23147G A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427190 MT358690
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3841/2020
 ATTAAAGGTT1- C36T T490A A1399G C3177T C6040T C8782T G12478A T18736C C24034T C25803T T26729C G28077C T28144C C28896G G28985T A29012G A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427193 MT358694
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3850/2020
 ATTAAAGGTTTATACCTTCC1- C8782T C17747T A17858G C18060T T28144C C29870M

EPI_ISL_427194 MT358695
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3855/2020
 ATTAAA1- A31W C36T C241T C1059T C3037T C6312T C14408T A23403G G25563T G29553A AAAAA29899-

EPI_ISL_427195 MT358696
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3858/2020
 ATTAAA1- C36T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427196 MT358697
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427198 MT358699
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3871/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C6040T C14408T A23403G G25563T T26756A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427199 MT358700
 2020-03-26 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3880/2020
 ATTAAAGGTTTAT1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427304
 2020-03-26 2020-04-18
 Brazil hCoV-19/Brazil/RJ-872/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A23403G C23613T C25672A T27299C GGG28881AAC T29148C G29786C TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_428319
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428320
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3736T C8655T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428321
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428322
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T C20628T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428323
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A G11083T G14772T G23518A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428324
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C7318A A14549G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428325
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C19017T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428326
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428327
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C15738T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428330
 2020-03-26 2020-04-20
 United States hCoV-19/USA/WI-UW-234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A16053G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428365
 2020-03-26 2020-04-20
 France hCoV-19/France/IDF3930/2020
 C28T C241T C1059T C3037T C9214T C10889T C14408T A23403G G25563T C25821T AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_428689
 2020-03-26 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_26/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T A20268G A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_428727
 2020-03-26 2020-04-21
 United States hCoV-19/USA/WI-UW-253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428909
 2020-03-26 2020-04-22
 Russia hCoV-19/Russia/Chechenya-83801/2020
 C241T C3037T C14408T C18877T C22713T A23403G G25563T C26735T

EPI_ISL_428916
 2020-03-26 2020-04-22
 Russia hCoV-19/Russia/Chechenya-83803/2020
 C241T C2113T C3037T C7765T C14323T C14408T C17690T C18877T A23403G G25563T

EPI_ISL_429133
 2020-03-26 2020-04-23
 Sweden hCoV-19/Sweden/20-08690/2020
 C241T C3037T C14408T A21137G A23403G

EPI_ISL_429556
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI477/2020
 C218T C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429557
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI478/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429562
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI483/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429564
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI486/2020
 C241T C244T C3037T C14408T A23403G C27046T GGG28881AAC G29440T

EPI_ISL_429571
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI497/2020
 C241T C3037T A12605G C14408T C15324T A23403G

EPI_ISL_429574
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI506/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429579
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI511/2020
 C241T C3037T C3264T C14408T A23403G

EPI_ISL_429584
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI518/2020
 A1230G G1440A G2891A C4668T G11083T T28088C

EPI_ISL_429585
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI520/2020
 C241T C1059T C3037T G5518T C10615T C14408T A23403G G25563T C29546T

EPI_ISL_429586
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI521/2020
 C241T C3037T C7834T C14408T C16289T A23403G

EPI_ISL_429587
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI522/2020
 C241T C1420T C3037T C7834T C14408T C16887T A23403G

EPI_ISL_429588
 2020-03-26 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI523/2020
 C241T C1059T C3037T A6366G C12049T C14408T A23403G G25563T

EPI_ISL_429612 MT375441
 2020-03-26 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4609/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C36T C6310T C8782T C17747T A17858G C18060T T19015A G23755T G25677T A25847G C26750T G27327T T28144C AA29902-

EPI_ISL_429614 MT375443
 2020-03-26 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T A12148T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_429746
 2020-03-26 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS2913521/2020
 C241T C3037T C14408T C15324T G22468T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_429969 MT415894
 2020-03-26 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2416T C3037T T5338C C10712T C14408T A23403G G25563T C29870A

EPI_ISL_429979 MT415903
 2020-03-26 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0080/2020
 C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T C29870M

EPI_ISL_430005
 2020-03-26 2020-04-24
 Jordan hCoV-19/Jordan/SR-047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C6027T C14408T A23403G TTTAGCACTCAA27568- A27631T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430466
 2020-03-26 2020-04-27
 India hCoV-19/India/S6/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G C23730T G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430639 MT451641
 2020-03-26 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC942/2020
 C241T C1059T C2106T C3037T C14408T C15154T A20755C A23403G G25563T

EPI_ISL_431018
 2020-03-26 2020-04-29
 United States hCoV-19/USA/AK-PHL052/2020
 ATTAAAGGTTTAT1- C241T C3037T C6504T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_433323
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR672/2020
 C7869T G11083T C14805T T17247C G26144T

EPI_ISL_433330
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR712/2020
 ATG1605- A10770G C12710T C25466T C28854T

EPI_ISL_433333
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433334
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T C29769T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433335
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR754/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_433339
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR785/2020
 ATG1605- A10770G C12710T C28854T

EPI_ISL_433341
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR796/2020
 ATG1605- A10770G C12710T C25466T C28854T

EPI_ISL_433353
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16329T A18639G A23403G C23536T G25563T C25731T C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433535
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1308/2020
 C241T C3037T C14408T A23403G

EPI_ISL_433739
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-784AD/2020
 G1440A G2891A A27669G

EPI_ISL_433743
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-784E9/2020
 A2480G C2558T G11083T C14805T C21622T G26144T G29736C

EPI_ISL_433813
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79A04/2020
 G1440A G2891A C4668T C28708T

EPI_ISL_433814
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79A22/2020
 C241T A2869G C3037T C14408T A23403G GGG28881AAC C29095T T29817C

EPI_ISL_433815
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79A40/2020
 C241T G2164A C3037T C10525T C14408T A23403G GGG28881AAC

EPI_ISL_433817
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79A8C/2020
 C5833T G11083T C11833T C14805T T17247C G23856A C25791T G26144T

EPI_ISL_433820
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79AC8/2020
 G1440A G2891A C27011T A27669G

EPI_ISL_433824
 2020-03-26 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79B01/2020
 A2480G C2558T C3429T G11083T C14805T A21137G G26144T C26456T

EPI_ISL_434121 MT632813
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S361/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_434122 MT632781
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S362/2020
 C241T C379A C1059T T2244C C3037T C3177T G14316T C14408T A23403G G25563T

EPI_ISL_434123 MT632802
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S363/2020
 C241T C379A C1059T T2244C C14408T A23403G G25563T

EPI_ISL_434124 MT632800
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S364/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T G29291A

EPI_ISL_434128 MT632926
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S368/2020
 C8782T C17747T A17858G C18060T G28001T T28144C

EPI_ISL_434129 MT633002
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S369/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434132 MT632918
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S372/2020
 C8782T C17747T A17858G C18060T C21575T T28144C

EPI_ISL_434134 MT632944
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S374/2020
 C8782T C17747T A17858G C18060T C21575T T28144C

EPI_ISL_434137 MT633007
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S377/2020
 C8782T C9534T C17747T A17858G C18060T T28144C

EPI_ISL_434146 MT632901
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S386/2020
 G3371A C8782T C17747T A17858G C18060T T19783C T28144C

EPI_ISL_434151 MT633045
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S391/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434163 MT633005
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S403/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434164 MT632903
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S404/2020
 C241T C3037T C14408T C16376T C18877T A23403G G25563T

EPI_ISL_434166 MT632867
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S406/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434173 MT633044
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S413/2020
 G11083T C14805T G26144T

EPI_ISL_434202 MT632991
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S442/2020
 C8782T C17747T A17858G C18060T C25886T T28144C

EPI_ISL_434252 MT632965
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S492/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434283 MT632806
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S523/2020
 C241T C1059T C3037T A9204G C14408T G18780T A23403G G25563T G29553A

EPI_ISL_434332 MT632956
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S572/2020
 C8782T C17747T A17858G C18060T T28144C T29667C

EPI_ISL_434345 MT633046
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S585/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434347
 2020-03-26 2020-04-29
 Belgium hCoV-19/Belgium/UGent-28/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434348
 2020-03-26 2020-04-29
 Belgium hCoV-19/Belgium/UGent-30/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_434349
 2020-03-26 2020-04-29
 Belgium hCoV-19/Belgium/UGent-31/2020
 T514C ATG1605- C17410T

EPI_ISL_434352
 2020-03-26 2020-04-29
 Belgium hCoV-19/Belgium/UGent-34/2020
 C241T C3037T G4255T C14408T A23403G A26530G

EPI_ISL_434372
 2020-03-26 2020-04-29
 Belgium hCoV-19/Belgium/ITM_C053/2020
 C241T C3037T A6507G C14408T A23403G

EPI_ISL_434468
 2020-03-26 2020-04-29
 Greece hCoV-19/Greece/51/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C14408T A23403G C24863T G25135T C27673T G28086T GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434527 MT811649
 2020-03-26 2020-04-29
 United States SARS-CoV-2/human/USA/SEARCH-0071-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_434555
 2020-03-26 2020-04-30
 Philippines hCoV-19/Philippines/PGC03/2020
 A1- C4780T C6312A C7488T G11083T C13730T C23929T T26048G G26849T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_434607 MT429183
 2020-03-26 2020-04-30
 United States SARS-CoV-2/human/USA/WI-UW-261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6814C G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434626
 2020-03-26 2020-04-30
 France hCoV-19/France/OCC-11/2020
 C241T C1427T C3037T G5305A G7472A G9422T C14408T A20262G A23403G GGG28881AAC

EPI_ISL_434627
 2020-03-26 2020-04-30
 France hCoV-19/France/OCC-12/2020
 C241T C1427T C3037T G5305A G9422T C14408T A20262G A23403G GGG28881AAC

EPI_ISL_434892
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH263/2020
 T490A G1583A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434893
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH264/2020
 C241T C3037T C14408T A23403G C23707T C26110T C29441G

EPI_ISL_434894
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH265/2020
 C241T C3037T C14408T G15243T A23403G

EPI_ISL_434895
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH266/2020
 C241T C1059T C3037T C14220T C14408T A23403G G25563T

EPI_ISL_434896
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH267/2020
 T490A G1679A C3177T C7124T C8782T C9561T T18736C C24034T G25186T C25433T T26729C C26895T G28077C T28144C A29700G

EPI_ISL_434897
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH268/2020
 T490A C3177T C7124T C8782T C9561T T18736C T21973C C24034T C25433T T26729C C26895T G28077C T28144C A29700G

EPI_ISL_434898
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH269/2020
 C241T C1059T C3037T C14408T A18082G A23403G G25563T C27964T

EPI_ISL_434899
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH271/2020
 C241T C1059T C3037T C14408T T18513C A23403G G25563T C27964T

EPI_ISL_434900
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH272/2020
 C241T C1059T C3037T C7279T C10188T C14408T A23403G T24982C G25563T C27964T C28887T

EPI_ISL_434901
 2020-03-26 2020-05-01
 United States hCoV-19/USA/TX-HMH273/2020
 C241T C3037T C6145T C14408T C14786T C15105A C21575T A23403G G24077T C25916T C29466T

EPI_ISL_435410
 2020-03-26 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00419/2020
 C241T C1059T C3037T C11572T C14408T A23403G G25563T C28432T

EPI_ISL_436104
 2020-03-26 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-19/2020
 C241T C3037T A5855G C14408T T19839C A23403G GGG28881AAC G29751A -29904CAAAAAAAAAA

EPI_ISL_436284
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C398T C8782T C26088T A26612G T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_436305
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C18348T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436317
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436318
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T G15438T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436327
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C313T C3037T C14408T A23403G G28541T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436330
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C17639T A20268G A23403G C28638T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436337
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C313T C3037T C14408T A23403G C26907A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436355
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T11522G C19983T C26088T T28144C G28812K G29291T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436356
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436369
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_436411
 2020-03-26 2020-05-06
 Spain hCoV-19/Spain/Valencia316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T T8603C G14209T C14408T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_436468
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC13-04/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436471
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC16-04/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436481
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC30-05/2020
 C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436486
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC38-05/2020
 C241T C3037T C14408T C18877T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436488
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC40-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436489
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC41-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436490
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC42-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436492
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC44-05/2020
 C241T C1059T C3037T C11767T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436494
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC46-05/2020
 C241T C1059T C3037T C11767T C11788T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436496
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC48-05/2020
 C241T C3037T C14408T A23403G G25644T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436497
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC49-05/2020
 C241T C1059T C3037T A6442T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436498
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC50-05/2020
 C241T C1059T C3037T C11767T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436499
 2020-03-26 2020-05-06
 United States hCoV-19/USA/PA-MGSC51-05/2020
 C241T C3037T C14408T C18877T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436631 MT706443
 2020-03-26 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C13430A C14408T A20755C A23403G G25563T T29206C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436632 MT706444
 2020-03-26 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T11918G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436867 MT439300
 2020-03-26 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2668Y C3037T C14408T A23403G G25563T C26750Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436868 MT439303
 2020-03-26 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436887 MT439295
 2020-03-26 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A16668R A23403G G25563T C28826Y TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_436967
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-547/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_436990
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-607/2020
 C241T C3037T C14408T C18744T A20268G A23403G G25088T

EPI_ISL_436991
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-608/2020
 C241T C1059T C2245T C3037T C14408T G19086T A23403G G25563T

EPI_ISL_436993
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-611/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437011
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-635/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_437013
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-639/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_437014
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-640/2020
 C241T C1059T C3037T C11572T C14408T A23403G G24368T G25563T G29690T

EPI_ISL_437016
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-644/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T G28077T

EPI_ISL_437030
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-670/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_437033
 2020-03-26 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-673/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_437189
 2020-03-26 2020-05-08
 Indonesia hCoV-19/Indonesia/JKT-EIJK01/2020
 C14636T T21976C G23426T

EPI_ISL_437190
 2020-03-26 2020-05-08
 Indonesia hCoV-19/Indonesia/JKT-EIJK02/2020
 C3622T

EPI_ISL_437266
 2020-03-26 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0070/2020
 C541T G1440A G2891A G26774T G28371A

EPI_ISL_437304
 2020-03-26 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-674/2020
 ATTAAA1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G C25549T G25563T

EPI_ISL_437309
 2020-03-26 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1049/2020
 ATTAAA1- C241T C1059T C3037T C3903T C6078Y C14408T C16616T A23403G A23734T G25563T

EPI_ISL_437314
 2020-03-26 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-510/2020
 ATTAAA1- C884T G1397A T5182C C5736T G8653T G11083T C13476Y C23874T T28688C G29742T

EPI_ISL_437315
 2020-03-26 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-942/2020
 ATTAAA1- C1059T C3037T G11083T C13476Y C14408T A23403G G25563T

EPI_ISL_437512 MT447177
 2020-03-26 2020-05-06
 Iran SARS-CoV-2/human/IRN/HGRC-2-2162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1397A T8707C G20887A C21627T C22735T T28688C C28830T G29742T ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_437556
 2020-03-26 2020-05-11
 United States hCoV-19/USA/CA-SR0256/2020
 C241T C1059T C3037T C14408T A23403G T25536C G25563T C29870A

EPI_ISL_437559
 2020-03-26 2020-05-11
 United States hCoV-19/USA/CA-SR0252/2020
 C241T C1059T C3037T C12473T C14408T A23403G G25563T G28396A C29870A

EPI_ISL_437653
 2020-03-26 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1421/2020
 C241T C1059T C3037T C12781T C14408T C15842A G22103C A23403G G25563T

EPI_ISL_438110
 2020-03-26 2020-05-12
 Austria hCoV-19/Austria/CeMM0284/2020
 C241T C635Y C3037T G3980R A5078R G9844T A10842R C14408T T17568Y T18499A T19839C G22471R T22521K A23403G C28253Y GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_438111
 2020-03-26 2020-05-12
 Austria hCoV-19/Austria/CeMM0285/2020
 C241T C3037T C14408T T22521K A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438112
 2020-03-26 2020-05-12
 Austria hCoV-19/Austria/CeMM0287/2020
 C241T C3037T C14408T T19839C T22521K A23403G C28253Y GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_438113
 2020-03-26 2020-05-12
 Austria hCoV-19/Austria/CeMM0288/2020
 C241T C3037T C14408T T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438152
 2020-03-26 2020-05-12
 United States hCoV-19/USA/WA-S599/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_438224
 2020-03-26 2020-05-12
 United States hCoV-19/USA/MD-HP00028/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_438240
 2020-03-26 2020-05-12
 United States hCoV-19/USA/MD-HP00085/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_439098
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11109T C14408T C23185T A23403G C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439101
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439106
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871K C10798A C13862T C14408T C17010Y A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_441781
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FA9B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11537G C14408T C14786T A23403G C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_441975
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C5650/2020
 C241T C3037T C5365T C12138T C14408T A23403G GGG28881AAC

EPI_ISL_442044
 2020-03-26 2020-05-12
 Iran hCoV-19/Iran/KHGRC-2-2162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1397A T8707C G20887A C21627T C22735T T28688C C28830T G29742T ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_442397
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CBB2E/2020
 C241T C3037T C14408T G21518T A23403G

EPI_ISL_442398
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CBB5B/2020
 ATG1605- C20270T

EPI_ISL_442506
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/England/SHEF-D21D7/2020
 C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC

EPI_ISL_442510
 2020-03-26 2020-05-12
 United Kingdom hCoV-19/England/SHEF-D2957/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_444794
 2020-03-26 2020-05-14
 Australia hCoV-19/Australia/QLDID940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T G16846T C18744T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_444986
 2020-03-26 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH8938/2020
 ATT1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_444987
 2020-03-26 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH9434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T G5230T C14408T A20268G A23403G

EPI_ISL_444997
 2020-03-26 2020-05-14
 United States hCoV-19/USA/SC_NHRC_03/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T C29095T

EPI_ISL_444998
 2020-03-26 2020-05-14
 United States hCoV-19/Guam/GU_NHG_01/2020
 C6312A T8855C C10582T G11083T C12933T C13730T C23929T C28311T

EPI_ISL_445110
 2020-03-26 2020-05-15
 United States hCoV-19/USA/CA-SR0119/2020
 C1059T G1397A G8653T G11083T C14408T A23403G G25563T A25980C G29742T

EPI_ISL_445111
 2020-03-26 2020-05-15
 United States hCoV-19/USA/CA-SR0120/2020
 C241T C1059T C3037T C3365T C14408T A23403G C25386T G25563T G25757A

EPI_ISL_445344
 2020-03-26 2020-05-15
 Chile hCoV-19/Chile/Temuco_10/2020
 ATTAAAGGT1- C241T C3037T A3633R A5838C C8389T G9479K C12932Y C14408T T20880W A23403G C23912Y C25276T G25563T C27294Y C27741T C28292A ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_447119
 2020-03-26 2020-05-16
 Chile hCoV-19/Chile/Temuco_9/2020
 ATTA1- GGTTT7- TTCCCAGGTAA17- C241T TG2685CA A2697T T2703Y T2709K C3037T C8389T C14408T C18103T C18109T T18158C A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447184 MT506689
 2020-03-26 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20213/2020
 C241T C1059T C1380T C3037T T10732W C14408T A23403G G25563T C26936Y

EPI_ISL_447189 MT506690
 2020-03-26 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20219/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAA29898-

EPI_ISL_447229 MT506693
 2020-03-26 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20259/2020
 C241T C3037T C14408T T15354C C18877T A23403G G25563T C29077T

EPI_ISL_447260
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/990333193/2020
 C241T C1059T C3037T C14408T C14708T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447263
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/990307712/2020
 C241T C1059T C3037T C7945T C11916T C14408T C18998T A23403G G25563T G26062T G29440T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447286
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/701002666/2020
 C241T C1059T C3037T C6070T C14408T G21123T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447287
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/701002591/2020
 C241T C1059T C3037T C14408T A23403G G25563T C28887T AAAAAAAAAAAA29892-

EPI_ISL_447288
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/701002561/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447289
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/701002556/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25603T AAAAAAAAAAAA29892-

EPI_ISL_447290
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/701002555/2020
 C241T C1059T C3037T C6070T C14408T G21123T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447291
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/701002550/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29528T AAAAAAAAAAAA29892-

EPI_ISL_447394
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/2047189/2020
 C241T C313T C3037T C8311T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447395
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/2047188/2020
 C241T C313T C3037T C8311T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447396
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/2047145/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447397
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/2047016/2020
 C241T C3037T C14408T A20268G A23403G G29734C AAAAAAAAAAAA29892-

EPI_ISL_447417
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/1639996/2020
 C241T C1059T C3037T C3622T C14408T A23403G G25563T C27549T AAAAAAAAAAAA29892-

EPI_ISL_447418
 2020-03-26 2020-05-17
 Israel hCoV-19/Israel/1639953/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T C29445T AAAAAAAAAAAA29892-

EPI_ISL_447472
 2020-03-26 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T17126C A20268G A23403G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_447473
 2020-03-26 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18877T A23403G G24620T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447493
 2020-03-26 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3242T C14408T A20268G A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447619
 2020-03-26 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU25/2020
 C241T C3037T G4261R C8025T C14408T A20268G G22661T A23403G G29734C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_447734
 2020-03-26 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C815T C8782T T9477A C14805T G25979T C26681T T28144C C28657T C28863T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447735
 2020-03-26 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_447737
 2020-03-26 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T TGGTCATGTTATGGT508- C1059T C3037T C5796T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447738
 2020-03-26 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C10507T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_448925
 2020-03-26 2020-05-19
 United Kingdom hCoV-19/Northern Ireland/NIRE-FAE1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11083T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_449801
 2020-03-26 2020-05-19
 United States hCoV-19/USA/UT-00301/2020/P1
 C241T C1059T C3037T C14408T A23403G C24378T G25563T C27964T

EPI_ISL_450324
 2020-03-26 2020-05-20
 India hCoV-19/India/CCMB_NIV4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C11572T G22468T T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450458 MT499184
 2020-03-26 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1209/2020
 ATTAAAGG1-

EPI_ISL_450725
 2020-03-26 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C067/2020
 C241T C3037T G4255T C11884T C14408T A23403G A26530G C29095T

EPI_ISL_450726
 2020-03-26 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C068/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_450763
 2020-03-26 2020-05-22
 United States hCoV-19/USA/MN-MDH-295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T G26020T C27964T C28099T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_450765
 2020-03-26 2020-05-22
 United States hCoV-19/USA/MN-MDH-297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G A2480G C2558T G11083T C14805T G26144T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_451090
 2020-03-26 2020-05-23
 Australia hCoV-19/Australia/SAP051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T G18394T C18877T A23403G G25563T T26761C

EPI_ISL_451091
 2020-03-26 2020-05-23
 Australia hCoV-19/Australia/SAP052/2020
 C241T C3037T C14408T C15324T G22918T A23403G G28690T

EPI_ISL_451093
 2020-03-26 2020-05-23
 Australia hCoV-19/Australia/SAP054/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_451184
 2020-03-26 2020-05-23
 Uganda hCoV-19/Uganda/UG002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T C16293T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451405
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC690/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_451407
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC692/2020
 C241T C1059T C1387T C3037T C14408T C17135T A20755C A23403G T24194C G25563T

EPI_ISL_451409
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC694/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29825T

EPI_ISL_451410
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC695/2020
 C241T C1059T C3037T C14408T A23403G G25563T G27593T A29499G

EPI_ISL_451412
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC697/2020
 C241T C1059T C3037T C11916T C14408T C18998T C22993T A23403G G25563T G29540A

EPI_ISL_451413
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC698/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451414
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC699/2020
 C241T C1059T C3037T C11916T C13994T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_451416
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC701/2020
 C241T C1059T C3037T C7101T C14408T A23403G C24133T G25563T

EPI_ISL_451417
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC702/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25552T G25563T G29540A

EPI_ISL_451418
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC703/2020
 C241T C1059T C3037T C6538T C14408T A23403G G25563T

EPI_ISL_451419
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC704/2020
 C241T C1059T C3037T C14408T G22037A A23403G G25563T

EPI_ISL_451421
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC706/2020
 C241T C1059T C3037T G6443A C14408T C15540T A23403G A25243G G25563T G28827T

EPI_ISL_451423
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC708/2020
 G199T C241T C1059T C3037T C14408T T15909A A23403G G25563T

EPI_ISL_451426
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC711/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451428
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC713/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451430
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC715/2020
 G199T C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451431
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC716/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451432
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC717/2020
 C241T C1059T C3037T C5211T C14408T A23403G G25563T

EPI_ISL_451437
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC722/2020
 C241T C1059T T2680C C3037T C14408T C16260T A23403G G23501T G25563T C28821A

EPI_ISL_451438
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC723/2020
 C241T C3037T T4579A C14408T G18898T A23403G GG28882AC

EPI_ISL_451441
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC726/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451442
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC727/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451445
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC730/2020
 C241T C1059T C3037T C11882T C14408T A23403G G25563T

EPI_ISL_451446
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC731/2020
 C241T C1059T C3037T G7560A C14408T C15960T C21221T A23403G G25563T

EPI_ISL_451447
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC732/2020
 C241T C1059T C3037T C11916T C14408T G20002T A23403G G25563T G28376T

EPI_ISL_451449
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC734/2020
 C241T C1059T C3037T C11916T C13620T C14408T C14925T C18998T C19983T A23403G G25049T G25563T G29540A

EPI_ISL_451451
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC736/2020
 G199T C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451454
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC739/2020
 C241T C1059T C3037T C14408T A23403G G25494A G25563T

EPI_ISL_451458
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC743/2020
 C241T C1059T C3037T C12084T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_451461
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC746/2020
 C241T C1059T C3037T T6871C C14408T A23403G G25563T A26433G

EPI_ISL_451466
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC752/2020
 C241T C3037T G10265A C14408T A23403G C28657T GGG28881AAC

EPI_ISL_451469
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC755/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451474
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC760/2020
 C241T C1059T C3037T G14294A C14408T A23403G G25563T

EPI_ISL_451475
 2020-03-26 2020-05-25
 United States hCoV-19/USA/NY-NYUMC761/2020
 C241T C1059T C3037T C14408T A23403G C23453T G25563T

EPI_ISL_451759 LR824330
 2020-03-26 2020-05-25
 Switzerland 100809
 C241T C3037T G11083T C14408T C15324T C18060Y A23403G G28690K C29831T

EPI_ISL_451760 LR824326
 2020-03-26 2020-05-25
 Switzerland 100810
 C241T C3037T C14408T C15324T G19312R G22436R A23403G C26882Y

EPI_ISL_451763 LR824321
 2020-03-26 2020-05-25
 Switzerland 100813
 C241T C3037T C14408T C15324T A19298W C19318Y T19344K C19522Y G19528R T22516W A23403G T25434K C27689T

EPI_ISL_451764 LR824318
 2020-03-26 2020-05-25
 Switzerland 100814
 C241T C3037T C14408T C15324T T19355W C22000M A22456W A23403G

EPI_ISL_451766 LR824317
 2020-03-26 2020-05-25
 Switzerland 100816
 C241T C3037T C14408T C15324T A22411W A23403G

EPI_ISL_451767 LR824324
 2020-03-26 2020-05-25
 Switzerland 100817
 C241T C1059T C3037T C14408T C22347S A23403G G25563T

EPI_ISL_451769 LR824325
 2020-03-26 2020-05-25
 Switzerland 100820
 C241T C3037T C14408T C15324T A19303R T19383W C22347S T22362W A22422R G22427T A23403G

EPI_ISL_451770 LR824323
 2020-03-26 2020-05-25
 Switzerland 100821
 C241T C3037T G6352T C8293T C14408T T18488C A19471R A19496W T22516W A23403G T24739C A26530R G29825K

EPI_ISL_451776 LR824342
 2020-03-26 2020-05-25
 Switzerland 100827
 C241T C3037T C14408T C15324T G19406R T22516W A22980W A23403G G29477K

EPI_ISL_452185
 2020-03-26 2020-05-27
 Italy hCoV-19/Italy/VR_20COV23-50/2020
 TTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC2- C98T G127T C241T C3037T C14408T A23403G TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452204
 2020-03-26 2020-05-27
 India hCoV-19/India/NIV-5109/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C17440T G22468T CGCTTC26351- T28144C G28878A G29742A A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452205
 2020-03-26 2020-05-27
 India hCoV-19/India/NIV-5119/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T C17440T G19816T G22468T T28144C G28878A G29742A A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452570
 2020-03-26 2020-05-27
 Spain hCoV-19/Spain/COV001169/2020
 C8782T T9477A G10787T C14805T G25979T G26314R T28144C C28657T C28863T

EPI_ISL_452593
 2020-03-26 2020-05-27
 Spain hCoV-19/Spain/COV001093/2020
 C241T C3037T T7148C C14408T A20268G A23403G T24829C

EPI_ISL_452597
 2020-03-26 2020-05-27
 Spain hCoV-19/Spain/COV001089/2020
 C241T C3037T C14408T A20268G A22155G A23403G

EPI_ISL_452598
 2020-03-26 2020-05-27
 Spain hCoV-19/Spain/COV001088/2020
 C241T ATG518- C3037T G8575A C14408T A20268G A23403G C26622T

EPI_ISL_452606
 2020-03-26 2020-05-27
 Spain hCoV-19/Spain/COV001078/2020
 C241T C3037T A9483G C14408T A20268G A23403G G25644A C29614T

EPI_ISL_452657
 2020-03-26 2020-05-27
 Spain hCoV-19/Spain/COV000910/2020
 C241T C3037T C14408T A23403G C24921T GGG28881AAC

EPI_ISL_452671
 2020-03-26 2020-05-27
 Spain hCoV-19/Spain/COV000892/2020
 C241T C2048T C3037T C6543T C14408T A23403G C26822T GGG28881AAC

EPI_ISL_453851
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C13680T C14408T C17104T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453852
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G5230T C14408T A20268G A23403G C27630T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453853
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- A2480G C2558T G11083T C14805T T24052C G26144T C29686T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454168
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A761G C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454169
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454287
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C17639T A20268G A23403G C28638T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454288
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T C9661T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454294
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G26209A GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454295
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454326
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454345
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C23481T G25273T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454346
 2020-03-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454772
 2020-03-26 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10023/2020
 ATTAAA1- C241T C3037T C10369T C14408T C20148T A23403G G29422T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_454773
 2020-03-26 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10024/2020
 ATTAAA1- G1440A G2891A C10138T T27483C G28378T AAAAAA29898-

EPI_ISL_455202
 2020-03-26 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C17977T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455286
 2020-03-26 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16887T C20031A A23403G C25546T C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455450
 2020-03-26 2020-05-29
 Poland hCoV-19/Poland/PL_P37/2020
 C241T C1059T C3037T C9214T C10889T C14408T A23403G G25563T C25821T

EPI_ISL_455989
 2020-03-26 2020-06-01
 United States hCoV-19/USA/LA-EVTL146/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455991
 2020-03-26 2020-06-01
 United States hCoV-19/USA/LA-EVTL148/2020
 C241T C1059T C3037T C14408T C17825T A18487G A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456007
 2020-03-26 2020-06-01
 United States hCoV-19/USA/NY-NYUMC770/2020
 C241T C920T C1059T C3037T C14408T A23403G G25563T C29675T

EPI_ISL_456019
 2020-03-26 2020-06-01
 United States hCoV-19/USA/NY-NYUMC782/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456029
 2020-03-26 2020-06-01
 United States hCoV-19/USA/NY-NYUMC793/2020
 C241T C3037T C6198T G11083T C14408T T17781C C18877T A23403G G25563T

EPI_ISL_456031
 2020-03-26 2020-06-01
 United States hCoV-19/USA/NY-NYUMC795/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_456051
 2020-03-26 2020-06-01
 United States hCoV-19/USA/NJ-NYUMC815/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456063
 2020-03-26 2020-06-01
 United States hCoV-19/USA/NY-NYUMC827/2020
 C241T T658C C1059T C3037T A10691G C14408T C18457T A23403G G25563T

EPI_ISL_456066
 2020-03-26 2020-06-01
 United States hCoV-19/USA/NY-NYUMC791/2020
 C8078T G11083T C14805T A15911G T17247C G26144T A27633G T28251G CA28253TC

EPI_ISL_456242
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1771/2020
 C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G

EPI_ISL_456243
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1772/2020
 C241T C3037T C14408T G20275T A23403G G25429T

EPI_ISL_456244
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1773/2020
 C241T C3037T C7765A C13684T C14408T A23403G GGG28881AAC

EPI_ISL_456245
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1776/2020
 C241T C3037T C6723T C14408T T16695C A23403G T26094C

EPI_ISL_456246
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1777/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456248
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1779/2020
 C241T T1918C C3037T C14408T C18877T A23403G G24926T G25563T

EPI_ISL_456249
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1780/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_456251
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1782/2020
 C241T C1059T C3037T C11916T C14408T A16344G C18998T A23403G G25563T C27741T C29296T G29540A

EPI_ISL_456252
 2020-03-26 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1783/2020
 C2013T C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G A29731G

EPI_ISL_456894
 2020-03-26 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB213/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_457127
 2020-03-26 2020-06-02
 United Kingdom hCoV-19/England/EXET-135A21/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457128
 2020-03-26 2020-06-02
 United Kingdom hCoV-19/England/EXET-135A30/2020
 G1440A G2891A A27669G

EPI_ISL_457132
 2020-03-26 2020-06-02
 United Kingdom hCoV-19/England/EXET-135AA9/2020
 C241T C3037T C4296T T10388C C14408T A23403G GGG28881AAC

EPI_ISL_457750
 2020-03-26 2020-06-02
 Germany hCoV-19/Germany/COV7/2020-03-26
 C241T C1059T C3037T C3426T C14408T G15380T A23403G G25563T

EPI_ISL_457809 MT646079
 2020-03-26 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00116/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_457995
 2020-03-26 2020-06-02
 Oman hCoV-19/Oman/RESP-20-6081/2020
 C1473T G11083T C14805T T17247C G26144T

EPI_ISL_458132
 2020-03-26 2020-06-03
 Spain hCoV-19/Spain/Barcelona_VH9758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C9988T C14408T A20268G A23403G G29734C

EPI_ISL_458231
 2020-03-26 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0326261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14120T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458622
 2020-03-26 2020-06-04
 United Kingdom hCoV-19/England/NORT-288FD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458623
 2020-03-26 2020-06-04
 United Kingdom hCoV-19/England/NORT-289067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5230T C14408T A20268G A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_459535
 2020-03-26 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-1713A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459869
 2020-03-26 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-010/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G5230T C14408T A20268G A23403G G26365A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459871
 2020-03-26 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-011/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C9994A C14408T A23403G G25563T G28368A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852TA

EPI_ISL_459872
 2020-03-26 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-012/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3373A C9733T C14408T A23403G GGG28881AAC TCTT29856CTAG G29862A GA29864AG -29867GTGTGTCTCACTC A29869T AAA29871GTT AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876TGC

EPI_ISL_459873
 2020-03-26 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-016/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T T6846A C14408T A23403G G25217T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_460008
 2020-03-26 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20469/2020
 T177C T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_460107 MT520182
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C2416T C3037T C14408T A17344G A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460114 MT520189
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00143/2020
 ATTAAA1- T490A C3177T C5784T C8782T G9116A C15613T T18736C G19684T C24034T T26729C C27635T C27999T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460124 MT520199
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00182/2020
 ATTAAAGGTTTAT1- C100T C241T C2416T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460150 MT520225
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14408T C15712A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460170 MT520245
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00145/2020
 ATTAAA1- T490A C3177T C5784T C8782T G9116A C15613T T18736C G19684T C24034T T26729C C27635T C27999T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_460183 MT520258
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00161/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T T29452C AAAAAAAAAAAAAAAAA29887-

EPI_ISL_460203 MT520278
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00195/2020
 ATTAAA1- C241T C2416T C3037T T10216C C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_460209 MT520284
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00177/2020
 ATTAAA1- C241T C1059T C3037T C14408T G16068A C19164T T22078C A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_460221 MT520296
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00187/2020
 ATTAAA1- C241T C2416T C3037T C14408T G19481T A23403G C24138T G25563T C25916T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460238 MT520313
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00151/2020
 ATTAA1- C241T C1059T C1387T C3037T C14408T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_460261 MT520336
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00156/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_460263 MT520338
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00190/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C19220T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_460280 MT520355
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00209/2020
 ATTAAA1- A1515G C9223T G11083T C14805T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460301 MT520376
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00159/2020
 ATTAAAGGTTTATACCTTCCC1- G105T C241T C3037T C14408T C18877T A23403G G25563T G29751C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460304 MT520379
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00192/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T G19825T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460339 MT520414
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C17104T G22226C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460359 MT520434
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14408T C16260T G21604T A23403G G25563T C28821A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460368 MT520443
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14408T G15760A G20056A A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460372 MT520447
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00189/2020
 ATTAAA1- C241T C3037T G8653T C14408T A23403G GGG28881AAC AAAAAAAA29896-

EPI_ISL_460394 MT520469
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00160/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_460409 MT520484
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00149/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T C25792T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_460417 MT520492
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T T20769C A23403G G25563T G26104A G28857T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460447 MT520522
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00152/2020
 ATTAA1- C241T C1059T A2165G C3037T C14408T A23403G G25563T G29711T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_460451 MT520526
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00179/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T A25759G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460453 MT520528
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00165/2020
 ATTAAA1- C241T GTCATGTTA510- C3037T C10279T C12132T C14408T T16077C T20401C A23403G C28603T G28899T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_460457 MT520532
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00181/2020
 ATTAAA1- C241T AAGTCATTT686- C2416T C3037T G5665A C14408T A23403G C24096A G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_460462 MT520537
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00150/2020
 ATTAAA1- C241T C1059T C3037T C11916T A12103G C14408T C18998T A23403G A24069C G25563T G29540A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_460466 MT520541
 2020-03-26 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25145C G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460671
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T C9693T G12550A C14408T C17825T A20268G C20740A A23403G C25578T C27610T C28854T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460682
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T T14739C A23403G A26530G G28851T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460703
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C29548A G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460948
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G G27514T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461118
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461125
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C18894T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461126
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461159
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T6353C C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461281
 2020-03-26 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T T13006C C14408T G19684T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462169
 2020-03-26 2020-06-08
 Belgium hCoV-19/Belgium/RR-0326315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462170
 2020-03-26 2020-06-08
 Belgium hCoV-19/Belgium/PF-0326316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462176
 2020-03-26 2020-06-08
 Belgium hCoV-19/Belgium/IL-0326322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G11083T C14805T T17247C G26144T A29598G G29648T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462177
 2020-03-26 2020-06-08
 Belgium hCoV-19/Belgium/BA-0326323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1666C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462190
 2020-03-26 2020-06-08
 Belgium hCoV-19/Belgium/DGL-0326336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T A9424T G19620A C26873T G28812T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462204
 2020-03-26 2020-06-08
 Belgium hCoV-19/Belgium/DC-0326350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462245
 2020-03-26 2020-06-08
 Belgium hCoV-19/Belgium/TMG-0326391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462345
 2020-03-26 2020-06-08
 Singapore hCoV-19/Singapore/227/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462351
 2020-03-26 2020-06-08
 Singapore hCoV-19/Singapore/233/2020
 C5849T C6310A C6312A G11083T C13517T C13730T C19524T G22021R C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462467
 2020-03-26 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7365/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T G8006A C10336T C14408T A23403G C28657T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462957
 2020-03-26 2020-06-08
 United States hCoV-19/USA/WY-WYPHL-00065/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_463973
 2020-03-26 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C17125Y TTTGTATGTAAATAAACATGCATTCCACACACCAGCTTTTGATAAAA19293- T19344- C19366- A23403G G25563T G28368A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_463974
 2020-03-26 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S218/2020
 ATTAAAG1- C241T C3037T C14408T TTTGTATGTA19293- ACATGCATTCCACACACCAGCTTTTGATAAAAGTGCTTTTGTTAATTTAAAACAATTACCATTTTTCTATTACTCTGACAGTCCATGTGAGTCTCATGGAAAACAAGTAGTGTCAGATATAGATTATGTACCACTAAAGTCTGCTACGTGTATAACACGTTGCAATTTAGGTGGT19308- A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_464140
 2020-03-26 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_29/2020
 C241T A1515G C4002T T8022G G10097A C13536T C14408T C14805T T17247C T20891G A23403G C23731T AG24389CC G26144T GGG28881AAC

EPI_ISL_465683
 2020-03-26 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240746/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465684
 2020-03-26 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240750/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465697
 2020-03-26 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241112/2020
 ATT1- C241T C1059T C3037T C9474T T14079A C14408T A23403G G25563T C25688A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465869
 2020-03-26 2020-06-11
 United Kingdom hCoV-19/England/20140002504/2020
 A2480G C2558T T9596Y C9603Y C14805T G20476T G26144T

EPI_ISL_465996
 2020-03-26 2020-06-11
 United Kingdom hCoV-19/England/20144023604/2020
 G1440A G2891A C7834T C10543T A27669G C28310M

EPI_ISL_467956
 2020-03-26 2020-06-16
 United States hCoV-19/USA/CA-SR0425/2020
 C8782T C17470T C26088T T28144C

EPI_ISL_467962
 2020-03-26 2020-06-16
 United States hCoV-19/USA/CA-SR0432/2020
 C241T C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T

EPI_ISL_468014
 2020-03-26 2020-06-16
 Australia hCoV-19/Australia/SAP246/2020
 ATTAAAGGTTTA1- C241T G677A C3037T C14408T G14580T A23403G

EPI_ISL_468026
 2020-03-26 2020-06-16
 Australia hCoV-19/Australia/SAP221/2020
 C241T C3037T C14408T C20762T C21575T A23403G GGG28881AAC

EPI_ISL_468311
 2020-03-26 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-146/2020
 C241T C3037T A6319G T8215C C14408T A23403G G25088T T26149C GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_468312
 2020-03-26 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-147/2020
 G24T C241T C3037T C12053T G14028K C14408T A23403G G25088T C28724Y GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_468314
 2020-03-26 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-149/2020
 C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_468407 MT628143
 2020-03-26 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T833C C1059T C3037T C14408T T28144C C28253Y A29671W

EPI_ISL_468521 MT628244
 2020-03-26 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1591/2020
 C959A C6445Y A10323G T17907C C28507Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468522 MT628245
 2020-03-26 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1592/2020
 C241T C3037T G7452T C8389T C10741Y C14408T A23403G T25520A G25563T G27478K C29420Y ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_468805
 2020-03-26 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2428/2020
 C241T C3037T C12513Y C14408T A20268G A23403G

EPI_ISL_468832
 2020-03-26 2020-06-17
 Spain hCoV-19/Spain/Alcaniz2408/2020
 C241T C3037T C14408T T17126C A20268G C20669Y A23403G

EPI_ISL_470849
 2020-03-26 2020-06-19
 Australia hCoV-19/Australia/WA32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470896
 2020-03-26 2020-06-19
 Russia hCoV-19/Russia/Moscow_PMVL-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_471219
 2020-03-26 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A4840C C14408T T17023C G22988A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471258
 2020-03-26 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C C23525T C24034T T26729C A27234T C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475142
 2020-03-26 2020-06-23
 Sweden hCoV-19/Sweden/20-50482/2020
 C241T C1059T C3037T C14408T G23282T A23403G G24368T G25563T

EPI_ISL_475143
 2020-03-26 2020-06-23
 Sweden hCoV-19/Sweden/20-50486/2020
 C241T C1059T C1101T C3037T C14408T A23403G G25563T G29711T

EPI_ISL_475564
 2020-03-26 2020-06-23
 Sweden hCoV-19/Sweden/20-06523/2020
 C241T C3037T C14408T A23403G GGG28881AAC GCGGAGT29742-

EPI_ISL_475600
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC123/2020
 C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T

EPI_ISL_475608
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC130/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475609
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC131/2020
 C241T C379A C1059T C3037T C14408T A23403G C25000T G25563T

EPI_ISL_475610
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC132/2020
 T8517C T8883C T13952C G15921A C18060T T19876C C24130T C25782T T28144C

EPI_ISL_475611
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC133/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475613
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC135/2020
 C2676T C8782T A22606T C26029A T28144C G28878A G29742A

EPI_ISL_475637
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC27/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_475685
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC70/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475687
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC72/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27661T

EPI_ISL_475688
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC73/2020
 C241T C1059T C3037T T13575C C14408T T16506C A23403G C25466T G25563T

EPI_ISL_475689
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC74/2020
 C241T A1631C C3037T C14408T C18877T A23403G G25563T

EPI_ISL_475692
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC77/2020
 C241T C1059T C3037T T13575C C14408T T16506C A23403G C25466T G25563T

EPI_ISL_475693
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC78/2020
 C241T C1059T C3037T T3668G G3671T C14408T G19348T C22311T C22689T A23403G C25199A G25563T T27687C C28311T

EPI_ISL_475694
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC79/2020
 C241T C379A C897T C1059T C2110T C3037T G8548T C9344T C14408T A23403G G25563T

EPI_ISL_475696
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC80/2020
 C241T A2120T C3290G GACCACTT3549- T6644C C11511G C13446T A13834T C14408T G15766T T22451A G29477T

EPI_ISL_475699
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC83/2020
 C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T

EPI_ISL_475700
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC84/2020
 C241T C313T C3037T G3470A G12274A C14408T A17709G A23403G GGG28881AAC

EPI_ISL_475703
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC87/2020
 C241T C3037T C14408T C18877T G21123T A21137G A23403G G25563T

EPI_ISL_475704
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC88/2020
 C364T TT692AA A1667C A8590G C10956A T11038C C18060T G18320T A18564C C19160T T25434C A25823T T28144C C29218G

EPI_ISL_475705
 2020-03-26 2020-06-23
 United States hCoV-19/USA/CA-CSMC89/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28812T C29253T

EPI_ISL_475818
 2020-03-26 2020-06-25
 Austria hCoV-19/Austria/CeMM0373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26366Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475841
 2020-03-26 2020-06-25
 Austria hCoV-19/Austria/CeMM0409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475860
 2020-03-26 2020-06-25
 Austria hCoV-19/Austria/CeMM0433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476821
 2020-03-26 2020-06-26
 Singapore hCoV-19/Singapore/487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477620
 2020-03-26 2020-06-29
 Hungary hCoV-19/Hungary/US-2901w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C14408T A23403G A24862G C28629T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478575
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284A31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T C28153T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478580
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284B98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8092T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478581
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284BA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478582
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284BB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21859T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478583
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284BC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478584
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284BD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478585
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284C3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T G28681A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478586
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284C86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478587
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284C95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13176T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478588
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/NORT-284CA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18377T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479178
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D12E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C683T A1515G C9223T G11083T C14805T T17247C A17799G C21161T G26144T C27688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479180
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D130D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5310T T11236C C14408T C15763T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479181
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D131C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5340T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479186
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D1367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479189
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D1394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479192
 2020-03-26 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D13D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479637
 2020-03-26 2020-07-01
 Canada hCoV-19/Canada/NB-221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11455T C14408T G21724T A23403G GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479639
 2020-03-26 2020-07-01
 Canada hCoV-19/Canada/NB-223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T20787C G26144T T28106C G28842T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479640
 2020-03-26 2020-07-01
 Canada hCoV-19/Canada/NB-224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479641
 2020-03-26 2020-07-01
 Canada hCoV-19/Canada/NB-225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1758T C3037T C14408T C19903T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479971
 2020-03-26 2020-07-01
 Japan hCoV-19/Japan/PG-0294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480001
 2020-03-26 2020-07-01
 Japan hCoV-19/Japan/PG-0326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C14408T A23403G G25563C G28178T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480024
 2020-03-26 2020-07-01
 Japan hCoV-19/Japan/PG-0352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C9430T C14408T G22199T A23403G GGG28881AAC G29447T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480073
 2020-03-26 2020-07-01
 Japan hCoV-19/Japan/PG-0404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C2902T C3037T C6151A C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480085
 2020-03-26 2020-07-01
 Japan hCoV-19/Japan/PG-0417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T C25587T G26713T T28144C C29739T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480225
 2020-03-26 2020-07-01
 Japan hCoV-19/Japan/PG-0293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11083T -11180T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481622
 2020-03-26 2020-07-03
 Finland hCoV-19/Finland/26M7124/2020
 C241T C3037T C6568T C14408T A23403G C23575T G23587C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481623
 2020-03-26 2020-07-03
 Finland hCoV-19/Finland/26M7974/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482306
 2020-03-26 2020-07-03
 United States hCoV-19/USA/OR-PROV-020/2020
 C8782T C15240T C17747T A17858G C18060T C20178T G20670A C21774T T28144C

EPI_ISL_482317
 2020-03-26 2020-07-03
 United States hCoV-19/USA/OR-PROV-035/2020
 A2550G G11083T C14805T G26144T

EPI_ISL_482318
 2020-03-26 2020-07-03
 United States hCoV-19/USA/OR-PROV-036/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_482319
 2020-03-26 2020-07-03
 United States hCoV-19/USA/OR-PROV-037/2020
 A4236G G11083T C14805T T25655C G26144T

EPI_ISL_482457
 2020-03-26 2020-07-03
 United States hCoV-19/USA/OR-PROV-222/2020
 A4236G G11083T C14805T T25655C G26144T

EPI_ISL_483071
 2020-03-26 2020-07-07
 Australia hCoV-19/Australia/SAP202/2020
 ATT1- C241T G1319A C3037T C8389T C14408T C21707T A23403G G25563T

EPI_ISL_483082
 2020-03-26 2020-07-07
 Australia hCoV-19/Australia/SAP254/2020
 ATTAAAGGTT1- C36T C4540T C8782T T9477A C10189A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483099
 2020-03-26 2020-07-07
 Australia hCoV-19/Australia/SAP319/2020
 ATTAAAGGT1- C173T C241T C3037T C6997T C14408T C14889T A23403G T25473C GGG28881AAC

EPI_ISL_483158
 2020-03-26 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0466-IPL/2020
 ATT1- C241T C3037T C4582T C11102T C14408T A20268G A23403G

EPI_ISL_483308
 2020-03-26 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0697-SAN/2020
 ATTAAAGG1- C241T C1059T C1887T C3037T C14408T G23282T A23403G G25563T

EPI_ISL_483613
 2020-03-26 2020-07-08
 Singapore hCoV-19/Singapore/590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C7008T T12317G C14408T C16848T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_483709
 2020-03-26 2020-07-08
 Israel hCoV-19/Israel/n14279/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_484053
 2020-03-26 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DA46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T C3037T C14408T A22481T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485937
 2020-03-26 2020-07-10
 United States hCoV-19/USA/CT-UW-3119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AAC34TTT C241T C3037T C14408T C18877T A22503T A23403G G25563T C26313T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_485941
 2020-03-26 2020-07-10
 United States hCoV-19/USA/CT-UW-3126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C4226T C4965T C12194T C14408T A23403G GGG28881AAC AA29902-

EPI_ISL_486058
 2020-03-26 2020-07-10
 United States hCoV-19/USA/WA-UW-2943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486062
 2020-03-26 2020-07-10
 United States hCoV-19/USA/WA-UW-2963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486063
 2020-03-26 2020-07-10
 United States hCoV-19/USA/WA-UW-2964/2020
 A4D C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAA29901-

EPI_ISL_486065
 2020-03-26 2020-07-10
 United States hCoV-19/USA/WA-UW-2976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- A35W C241T C1059T C3037T C14408T A23403G G25563T G29553A TG29867AA C29870A

EPI_ISL_486080
 2020-03-26 2020-07-10
 United States hCoV-19/USA/WA-UW-3024/2020
 ATTAAAGGTTTATACCTTC1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486081
 2020-03-26 2020-07-10
 United States hCoV-19/USA/WA-UW-3026/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_486082
 2020-03-26 2020-07-10
 United States hCoV-19/USA/WA-UW-3030/2020
 ATTAAAG1- C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_486287
 2020-03-26 2020-07-10
 United States hCoV-19/USA/CA-CZB-2043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C320S C959A T17907C A18577C A23122V T25902W T25908W G25913S

EPI_ISL_486831
 2020-03-26 2020-07-10
 United States hCoV-19/USA/OR-PROV-034/2020
 C241T C3037T C14408T G17193A C18877T A23403G G25563T T28251CTG CA28253TC

EPI_ISL_487652
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26754A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487695
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- -11075TTT G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487940
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487969
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488250
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F84E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C8090T C10789T C11008T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488481
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-282954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- C1593T C3037T C7124T C14408T A23403G T25202K G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488511
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-284CB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488512
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-284CFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T G11083T C14805T G16206T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488525
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-284B2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A C14408T C16329T A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488528
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-282277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912A C3037T C10641T C10969T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488538
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-284E08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G7393T A10323G G11083T C14805T T17247C T25202K G26144T C28377T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488543
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-282417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488579
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-2821B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4276T C14408T A23403G T25202K G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488594
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-2829EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488602
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-284A40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T25202K T27384C T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488609
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-28256F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488620
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-282550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G G5612A C9223T G11083T C14805T C14925T T17247C A17799G C19170T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488670
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-28258D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T25202K C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488683
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-2824BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488716
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/England/NORT-28257E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T25202K C26456Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488900
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1274T ATG1605- C5826T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488906
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17126C A20268G G21372T A23403G G24197A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489006
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C7423T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489054
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489408
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171AFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2086A C3037T C14408T C18744T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489625
 2020-03-26 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-17077E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C664T C3037T C14408T T17126C A20268G A23403G G24197A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489709
 2020-03-26 2020-07-14
 Czech Republic hCoV-19/Czech Republic/NRL_5513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G12849R C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490982
 2020-03-26 2020-07-15
 United States hCoV-19/USA/CT-UW-3417/2020
 ATTAAAGGTTTATACCTTCCCA1- AAC34TTT C679T A8031G C8782T C17747T A17858G C18060T A24694T T28144C C29870A -29904AAAAAAAAAA

EPI_ISL_490983
 2020-03-26 2020-07-15
 United States hCoV-19/USA/CT-UW-3423/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AAC34TTT C241T C1059T C3037T C10851T C14408T G16975T A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_490985
 2020-03-26 2020-07-15
 United States hCoV-19/USA/CT-UW-3450/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C1917T C3037T C5512T C14408T A23403G G25563T -29904AAAAAAAAAAAA

EPI_ISL_490986
 2020-03-26 2020-07-15
 United States hCoV-19/USA/CT-UW-3465/2020
 ATTAAAGGTT1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T A29903-

EPI_ISL_490987
 2020-03-26 2020-07-15
 United States hCoV-19/USA/CT-UW-3470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAAA

EPI_ISL_490989
 2020-03-26 2020-07-15
 United States hCoV-19/USA/ID-UW-3172/2020
 TAAAGGTTTATA3- CCCAGGTAACAAACCAA19- C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T -29904AAAAAAAAAAAAA

EPI_ISL_490990
 2020-03-26 2020-07-15
 United States hCoV-19/USA/ID-UW-3183/2020
 ATTAAAGGTTT1- A31T AC35TT C241T C1059T C3037T C14408T A16387T A23403G G25563T A26055G C28519T -29904AAAAAAAAAAAAAA

EPI_ISL_490991
 2020-03-26 2020-07-15
 United States hCoV-19/USA/ID-UW-3184/2020
 ATTA1- C241T T833C C1059T C3037T C14408T A23403G C23679T G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_490992
 2020-03-26 2020-07-15
 United States hCoV-19/USA/ID-UW-3196/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C3037T C14408T A23403G G29862A G29864A TG29867AA C29870A

EPI_ISL_490993
 2020-03-26 2020-07-15
 United States hCoV-19/USA/ID-UW-3204/2020
 ATTAAA1- C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_491003
 2020-03-26 2020-07-15
 United States hCoV-19/USA/UN-UW-3202/2020
 ATTAAAGGTTTATACCTTCC1- C21M A26- C28Y AC35TT C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_491016
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3336/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C8782T C17747T A17858G C18060T T28144C C29870H AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_491017
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3340/2020
 ATTAAAGGT1- A31T C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AA29902-

EPI_ISL_491018
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3356/2020
 AT1- A4T C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_491019
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3365/2020
 ATTAAA1- C36T C8782T C17747T A17858G C18060T C21575T G22988A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_491022
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3413/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T G11083T C17747T A17858G C18060T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491030
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3515/2020
 ATTAAAGGT1- A31T AAC34TTT C8782T C12025T C17747T A17858G C18060T T28144C G28703T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_491031
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3521/2020
 ATTAAAGGTTT1- C36T G6220A C8782T C17747T A17858G C18060T T28144C A28920G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_491032
 2020-03-26 2020-07-15
 United States hCoV-19/USA/WA-UW-3529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C36T C8782T C17747T A17858G C18060T T27384C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_491103
 2020-03-26 2020-07-15
 United States hCoV-19/USA/SC-DHEC-0050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_491116
 2020-03-26 2020-07-16
 Oman hCoV-19/Oman/RESP-20-6020/2020
 ATTAAAGGTT1- C241T C3037T C4246T G10265A C14408T C16293T A23403G T23482C GGG28881AAC TAATAGCTTCTTAGGAG29848- GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_491914 MT776408
 2020-03-26 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A20268G A23403G A28222G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491915 MT776409
 2020-03-26 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A20268G A23403G A28222G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492850
 2020-03-26 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C3DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7070K C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492882
 2020-03-26 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C30A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2973T A7066R G11083T G13627T C14805T C15540T G26144T A28338G C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493425
 2020-03-26 2020-07-21
 Singapore hCoV-19/Singapore/665/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_494609
 2020-03-26 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1448/2020
 ATT1- C241T C1059T C3037T C3365T C14408T A23403G C25386T G25563T G25757A

EPI_ISL_495013
 2020-03-26 2020-07-22
 Canada hCoV-19/Canada/LTRI-25/2020
 ATTAAAGGTTTAT1- C241T C2416T C2919T C3037T A5302G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495399 MT791854
 2020-03-26 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0493/2020
 ATTAAA1- A1515G C9223T G11083T A11305G C14805T T17247C A21625G G26144T C29421T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_495400 MT791855
 2020-03-26 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0494/2020
 AT1- C241T C3037T C14408T A23305C A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_495402 MT791857
 2020-03-26 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0496/2020
 ATT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495403 MT791858
 2020-03-26 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0497/2020
 AT1- G11083T G13627T C14805T C15540T G15906T C22450G G26144T C26735T A28338G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_495624
 2020-03-26 2020-07-23
 United States hCoV-19/USA/MN-MDH-1325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495628
 2020-03-26 2020-07-23
 United States hCoV-19/USA/MN-MDH-1329/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T T19527C A23403G G25563T C27964T C28099T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496371
 2020-03-26 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1710/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_496928
 2020-03-26 2020-07-24
 United States hCoV-19/USA/MN-MDH-1342/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C3096T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_496929
 2020-03-26 2020-07-24
 United States hCoV-19/USA/MN-MDH-1343/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T A20268G A23403G G27750T G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_496930
 2020-03-26 2020-07-24
 United States hCoV-19/USA/MN-MDH-1344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T T19527C A23403G G25563T C27964T C28099T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498158
 2020-03-26 2020-07-27
 Colombia hCoV-19/Colombia/88871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500425
 2020-03-26 2020-07-28
 Spain hCoV-19/Spain/COV005993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T G2879A C3037T T13006C C14408T C17004T A23403G G25563T C25688T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_500501
 2020-03-26 2020-07-29
 United States hCoV-19/USA/CT-UW-3422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C8139T C14408T A23403G G25563T G26779T G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_501188
 2020-03-26 2020-07-31
 Malaysia hCoV-19/Malaysia/2063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2508A C6310A C6312A G11083T C13730T C19524T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501189
 2020-03-26 2020-07-31
 Malaysia hCoV-19/Malaysia/2065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6312A T7621C G11083T C13730T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501190
 2020-03-26 2020-07-31
 Malaysia hCoV-19/Malaysia/2079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T7621C G11083T C13730T C23929T C25549T C28311T

EPI_ISL_501591
 2020-03-26 2020-07-31
 United Kingdom hCoV-19/England/BRIS-13106F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C17822T C20762T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501624
 2020-03-26 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260EF81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1550R C3037T G12674R G13828S C14408T G20632K A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501632
 2020-03-26 2020-07-31
 United Kingdom hCoV-19/Scotland/EDB2695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- AAGTCATTT686- C988T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506976
 2020-03-26 2020-08-02
 South Korea hCoV-19/Korea/KCDC2182/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T T13686C C14408T A23403G G25563T C26124T

EPI_ISL_506977
 2020-03-26 2020-08-02
 South Korea hCoV-19/Korea/KCDC2183/2020
 A1- C241T C3037T C14408T C15371T A23403G GGG28881AAC

EPI_ISL_506979
 2020-03-26 2020-08-02
 South Korea hCoV-19/Korea/KCDC2185/2020
 AT1- A4T C241T C3037T C14408T G14500T A23403G GGG28881AAC

EPI_ISL_506980
 2020-03-26 2020-08-02
 South Korea hCoV-19/Korea/KCDC2186/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_507073
 2020-03-26 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C14805T C18252T G26144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_507092
 2020-03-26 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D3AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C2558T C9430T G11083T C14805T C16995T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507126
 2020-03-26 2020-08-03
 United Kingdom hCoV-19/England/NORT-2A61E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T C2091T G7393T A10323G G11083T C14805T T17247C G26144T C28377T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507152
 2020-03-26 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507153
 2020-03-26 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507155
 2020-03-26 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D2533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507902
 2020-03-26 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C2723T C3037T C11866T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_507926
 2020-03-26 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T C26447T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_507975
 2020-03-26 2020-08-03
 United States hCoV-19/USA/MN-MDH-1388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A2480G C2558T G11083T C14805T C22523M G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_507976
 2020-03-26 2020-08-03
 United States hCoV-19/USA/MN-MDH-1389/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T G15380T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_508885
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14350/2020
 ATTAAA1- C241T T511C C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508887
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T T10561C C14408T C15324T C16887T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508888
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T T9156A C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508889
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T C14676T C14786T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508890
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C539T C3037T C14408T C15324T A23403G C25433T G25855T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508891
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T511C C3037T C14408T A23403G G25563T T26182C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508892
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14627/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508893
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C106T C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508894
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA14791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGC1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_508895
 2020-03-26 2020-08-04
 France hCoV-19/France/ARA1492/2020
 ATTAAAG1- C241T C2416T C3037T C14408T A23403G C23997T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509740 MT846444
 2020-03-26 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0682/2020
 ATTA1- T490A C3177T C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509745 MT846449
 2020-03-26 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0687/2020
 ATTA1- C241T C3037T C14408T C18877T C21767T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509747 MT846451
 2020-03-26 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0689/2020
 ATTAAAGGTTT1- C241T C829T C1059T C3037T C14408T C16887T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_510925
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT0666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T A21213G A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511027
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT0768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511154
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT0897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C4113T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511336
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4090T G10265A C14408T A15972G A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511337
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAA1- C241T C3037T C14408T C16293T C20759T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511338
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C2706T C3037T C5348T C14178T C14408T G23282C A23403G A23416T G25563T C28528T C29119T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511339
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C2706T C3037T G3242T C5348T C14178T C14408T G23282C A23403G T23406C A23416T G25563T C28528T C29119T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511364
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2925T C3037T C3140T C13059T C14408T G21641A A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511373
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15925T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511377
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511379
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G28302A GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511391
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511394
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511396
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C2416T C3037T G8371T C14408T A23403G G25563T G29703T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511405
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C12153T C14408T T19521C A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511408
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T G21641A A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511410
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G19947T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511411
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511413
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8836T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511418
 2020-03-26 2020-08-07
 Portugal hCoV-19/Portugal/PT1459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29013T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511512
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT0963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C4002T C6255T G10097A C13536T C14408T A23403G C23731T GGGGAACTT28881- TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511560
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C4090T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511563
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC C29627T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511565
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T T9667C C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511566
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511576
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511584
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTA1- C241T C2416T C3037T C14408T C14786T C19884T G22093A A23403G G25563T T25577C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511672
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C7165A C9979T G11083T C12823T G26144T T26692C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511733
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G579T C3037T G5230T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511752
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24680T C25688T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511753
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T T19749C G21761T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511754
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4763A C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511755
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T C21090T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511756
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511757
 2020-03-26 2020-08-08
 Portugal hCoV-19/Portugal/PT1214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_514313
 2020-03-26 2020-08-16
 Israel hCoV-19/Israel/CVL-n14279/2020
 AT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_514648 MT892995
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T C21614T A24694T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514649 MT892996
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G G22899T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_514663 MT893010
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G2809T C8782T C10755T C17747T A17858G C18060T A24694T C27610T T28144C G28812T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_514664 MT893011
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A2480G C2558T C10908T G11083T C14805T C25810T G26144T G28851C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_514666 MT893013
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A2480G C2558T C10908T G11083T C14805T G26144T G28541A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514667 MT893014
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514668 MT893015
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C21707T A23403G A26530G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_514669 MT893016
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G20752T A23403G C24138T G25563T T28930C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514670 MT893017
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1451/2020
 ATTAAAGGTTT1- C241T G1043A C1997T C3037T G5008T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_514671 MT893018
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1452/2020
 ATT1- C5142T C8782T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514672 MT893019
 2020-03-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C6310T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515269 MT897466
 2020-03-26 2020-08-18
 United States SARS-CoV-2/human/USA/MN-MDH-1460/2020
 ATTAAA1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_515279
 2020-03-26 2020-08-18
 United States hCoV-19/USA/WA-UW-4608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515280
 2020-03-26 2020-08-18
 United States hCoV-19/USA/WA-UW-4614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C8782T C17747T A17858G C18060T T28144C GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515281
 2020-03-26 2020-08-18
 United States hCoV-19/USA/WA-UW-4615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T A23403G G25563T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515282
 2020-03-26 2020-08-18
 United States hCoV-19/USA/WA-UW-4616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C379A C1059T C3037T C7420T C14408T A23403G G25563T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515334
 2020-03-26 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0052/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_515901
 2020-03-26 2020-08-20
 United States hCoV-19/USA/CA-CDPH008/2020
 ATT1- C2141Y G2840R C8782T C17747Y A17858G C18060Y A22296G A26045G T28144C AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_516316
 2020-03-26 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21589/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T A5011M C9223T C13431T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_516321
 2020-03-26 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T7734Y C14408T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_516322
 2020-03-26 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2146Y C2862T C3037T A5011M C14408T T19181C A23403G G25563T G27478K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_516324
 2020-03-26 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21597/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_517144
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A82F5/2020
 ATTAA1- ATG1605- A10982G C29870A

EPI_ISL_517151
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A837A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- A10982G C29870A

EPI_ISL_517159
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A83F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14408T A23403G C25350T G26199R C29870A

EPI_ISL_517171
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A84C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25350Y C29870A

EPI_ISL_517172
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A84D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1319R G11083T C14805T T17247C G26144T C29870A

EPI_ISL_517175
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A851A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G13564T C14408T A23403G

EPI_ISL_517176
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T C14724T A23403G C23731T G28580T GGG28881AAC C29870A

EPI_ISL_517177
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC

EPI_ISL_517178
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G G27676C GGG28881AAC C29870A

EPI_ISL_517182
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C541T C1059T C3037T C14408T T23284C A23403G G25563T G29757T

EPI_ISL_517185
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A85B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T17055C A20268G A23403G

EPI_ISL_517188
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A85ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15237Y C21711T A23403G GGG28881AAC C29870A

EPI_ISL_517189
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C620T C3037T G10097A C14408T T22516Y A23403G C23731T G27651K GGG28881AAC

EPI_ISL_517190
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8814T G11083T A19476G G26144T

EPI_ISL_517192
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517193
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517209
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A878D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517210
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A879C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517218
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC C29870A

EPI_ISL_517219
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A883F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A T13216G C14408T A23403G C23731T C28087Y GGG28881AAC

EPI_ISL_517224
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A888A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A T13216G C14408T A23403G C23731T C25378Y GGG28881AAC C29870A

EPI_ISL_517226
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A88A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_517227
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A88B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G13564T C14408T A23403G C29870A

EPI_ISL_517232
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8F0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C10319Y C14408T A23403G GGG28881AAC C29870A

EPI_ISL_517234
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8F2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C12138T C14408T A23403G GGG28881AAC

EPI_ISL_517236
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8F58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C3602T C14403T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_517237
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8F67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G21624T A23403G G24000T GGG28881AAC C29870A

EPI_ISL_517238
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8F76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T C29870A

EPI_ISL_517241
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8FA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T T10480C G11083T C14805T T26130C G26144T C27559T C29870A

EPI_ISL_517246
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8FFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T A3123G C11074Y G11083T C14805T G26144T

EPI_ISL_517250
 2020-03-26 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_518862 MT920001
 2020-03-26 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G598T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518865 MT920004
 2020-03-26 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A21231G A23403G G25563T G26233T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_520719
 2020-03-26 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920626247/2020
 C241T C3037T C7765T T11205G C14408T A20268G A23403G T28334C G29734C

EPI_ISL_521900 MT972128
 2020-03-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G285A C3037T C14408T A23403G

EPI_ISL_521901 MT972129
 2020-03-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T1211G C3037T C5301T C14408T A23403G G25563T C27964T

EPI_ISL_521902 MT972130
 2020-03-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T7438C C14408T A23403G A26864G C29353T

EPI_ISL_525632
 2020-03-26 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-30593-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T1303C C3037T G10265A C14408T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_525634
 2020-03-26 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-30826-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28646A AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_526810
 2020-03-26 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G8201A C12115T C14408T A23403G G25563T G29868A C29870A

EPI_ISL_527016
 2020-03-26 2020-09-03
 Australia hCoV-19/Australia/NSW2435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_529222
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61E4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A ATG1605- G4136T C20270T C22987T C26464T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529604
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61CFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529605
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61D06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529606
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61D15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529608
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61D7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23430T C23731T C27644T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529609
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61D8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C27513T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529610
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61DE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529612
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61E21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G25297A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529613
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61E8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8131T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529614
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61E9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G C23844T G25429T G28326T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529616
 2020-03-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61ED6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530047
 2020-03-26 2020-09-10
 Spain hCoV-19/Spain/MD-LP43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2013A C3037T G4006A C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530243
 2020-03-26 2020-09-11
 Australia hCoV-19/Australia/QLD955/2020/P1
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_530244
 2020-03-26 2020-09-11
 Australia hCoV-19/Australia/QLD965/2020/P1
 ATTA1- C241T T809C C3037T C14408T A23403G G25049T

EPI_ISL_530267
 2020-03-26 2020-09-11
 Australia hCoV-19/Australia/QLD987/2020/P1
 ATTA1- C241T C1059T C3037T C10851T C14408T C14724T C15763T A23403G G25563T C29870A

EPI_ISL_530272
 2020-03-26 2020-09-11
 Australia hCoV-19/Australia/QLD1012/2020/P1
 AT1- A2480G C2558T G11083T C14805T G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536212
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238674/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T A23403G G25563T C26885T C29364Y GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536216
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238725/2020
 C241T C3037T C14408T C15324T A23403G C25433T T27444C C27847T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536218
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25217T G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536219
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C15324T A23403G C25433T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536220
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238803/2020
 AT1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530R GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536223
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2416T C3037T C4755T C14408T C18486T A23403G G25563T C26753T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536224
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238862/2020
 ATTAAAG1- C241T C3037T C14408T C15324T A19352M A23403G C25433T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536225
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238888/2020
 ATTAAAGGTTTA1- C4540T C4686T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T G29266T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536229
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00238978/2020
 AT1- C241T C1884Y C2416T C3037T C14408T C19554T A19818M A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536232
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C11916T C14408T A16344G C18998T A23403G G25563T C27741T C29296T G29540A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536234
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239134/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15324T A23403G C25433T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536237
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239194/2020
 A1- C241T C1568A C3037T C14408T A23403G G27708T C28915T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_536240
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239249/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G C25433T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536241
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239255/2020
 ATTA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_536242
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239272/2020
 ATTA1- C241T C1059T C3037T C6031A C14408T C19901T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536243
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C3176T C14408T T23042Y A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536244
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239298/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536247
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239396/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T G11083T C14408T A21137R A23403G G25217T G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536257
 2020-03-26 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00239865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C6968T C14408T C15324T G15463T A23403G C25433T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_537434
 2020-03-26 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3476R C8172Y C14408T A20268G A23403G C28138Y G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537453
 2020-03-26 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_538326
 2020-03-26 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538458
 2020-03-26 2020-09-17
 Singapore hCoV-19/Singapore/926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T A7161G C8782T T18736C G19684T C24034T A24652T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538459
 2020-03-26 2020-09-17
 Singapore hCoV-19/Singapore/927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29474T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538935
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G942R C3037T C3602T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538941
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538950
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097R T13216K C14408T C18486Y A23403G C23731Y G25471K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538954
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C11300T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538963
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9DA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538975
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539028
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A890D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539089
 2020-03-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541001
 2020-03-26 2020-09-22
 South korea hCoV-19/South Korea/IHC3486/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T T20394C A23403G GGG28881AAC AAAAAAAAAAAAAAAA29888-

EPI_ISL_541346
 2020-03-26 2020-09-22
 Brazil hCoV-19/Brazil/PR-5623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C27741T G29540A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541760
 2020-03-26 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286E30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313Y C3037T C13620Y C14408T A20268R A23403G G28086K GGG28881RRS G29734S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547516
 2020-03-26 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548129
 2020-03-26 2020-09-25
 New Zealand hCoV-19/New Zealand/CAN-ESR-20VR3180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1319A C3037T C8389T C11195T C14408T C21707T A23403G G25563T A25616G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_560591
 2020-03-26 2020-09-29
 France hCoV-19/France/HDF8231/2020
 ATTAAAGGTTT1- A26- C28T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_565965
 2020-03-26 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4423T C14408T A20763T G22225K C23191T A23403G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_568686
 2020-03-26 2020-10-02
 Indonesia hCoV-19/Indonesia/JI-EIJK-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

GWHAORE01000001
 2020-03-26 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P2.2/2020
 C241T C313T C3037T C14408T T14950C A23403G GGG28881AAC

MT293178
 2020-03-26 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW413/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T T27895C C28289A T28340A G29553A AAAA29900-

MT459846
 2020-03-26 2020-05-11
 Greece SARS-CoV-2/human/GRC/51_36518/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C14408T A23403G C24863T G25135T C27673T G28086T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459985
 2020-03-26 2020-05-12
 United States SARS-CoV-2/human/GUM/GU-NHG-01/2020
 C6312A T8855C C10582T G11083T C12933T C13730T C23929T C28311T

MT459990
 2020-03-26 2020-05-12
 United States SARS-CoV-2/human/USA/SC-NHRC-03/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T C29095T

MT509480
 2020-03-26 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT509491
 2020-03-26 2020-05-22
 United States SARS-CoV-2/human/USA/MD-HP00028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT627932
 2020-03-26 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S599/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT706151
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G20752T A23403G G25563T C28677T T28930C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706155
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A C16428T T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706196
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706246
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706351
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706352
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3736T C8655T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706353
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706354
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T C20628T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706355
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A G11083T G14772T G23518A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706356
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C7318A A14549G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706357
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C19017T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706358
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706359
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C15738T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706362
 2020-03-26 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A16053G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT764178
 2020-03-26 2020-07-15
 United States SARS-CoV-2/human/USA/COVID20-0050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT810558
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0425-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17470T C26088T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810564
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0432-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810582
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0466-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4582T C11102T C14408T A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810784
 2020-03-26 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1710-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810827
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1448-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C3365T C14408T A23403G C25386T G25563T G25757A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810958
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0252-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T G28396A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810961
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0256-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G T25536C G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811176
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0119-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T G1397A G8653T G11083T C14408T A23403G G25563T A25980C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811177
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0120-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C3365T C14408T A23403G C25386T G25563T G25757A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811321
 2020-03-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0697-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T G23282T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

NMDC60013233
 2020-03-26 2020-06-01
 China hCoV-19/Guangzhou/ID037/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C6401T C14408T A23403G C23988T G25563T

NMDC60013238
 2020-03-26 2020-06-01
 China hCoV-19/Guangzhou/ID042/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C12923T C14408T A20268G A23403G T29265A

EPI_ISL_420024 MT322421
 2020-03-27 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0043/2020
 AT1- C241T C3037T C14408T G16858T G17278T C22120T A23403G C23575T G23587C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_420025 MT322422
 2020-03-27 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0044/2020
 ATTAAA1- C241T C3037T C14408T G16858T G17278T C22120T A23403G C23575T G23587C

EPI_ISL_420026 MT322423
 2020-03-27 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0045/2020
 ATT1- C241T C3037T C14408T G16858T G17278T C22120T A23403G C23575T G23587C C29870A

EPI_ISL_420160
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C07E9/2020
 G431A ATG1605- C20270T G26314A A29683T

EPI_ISL_420178
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C04A6/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420179
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C042E/2020
 C241T C3037T C14408T C21431T A23403G

EPI_ISL_420180
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C02CA/2020
 C241T C1469T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420181
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0321/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420184
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C03C7/2020
 G1440A C1911T G2891A

EPI_ISL_420185
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C038B/2020
 ATG1605- T4949C G6734A C8480T C16887T

EPI_ISL_420188
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0400/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420189
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0497/2020
 A2480G C2558T G11083T C14805T G26144T G27703T

EPI_ISL_420190
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C03F4/2020
 C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC

EPI_ISL_420191
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0260/2020
 A2480G C2558T G11083T G12067T C14805T C19536T G26144T

EPI_ISL_420192
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C02BB/2020
 C241T C3037T C14408T A23403G

EPI_ISL_420210
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C041F/2020
 C241T C3037T C8637T C14408T A23403G

EPI_ISL_420215
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C046A/2020
 C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T C27513T GGG28881AAC

EPI_ISL_420217
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C043D/2020
 C241T G680A C3037T C4002T C7286A G10097A C13536T C14408T A23403G C23731T C27513T GGG28881AAC

EPI_ISL_420718
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/20139057204/2020
 A2480G C2558T G11083T C14805T C17690Y C18032Y T19203Y G26144T C28253Y

EPI_ISL_420719
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/20139057404/2020
 C241T C3037T C14408T G15921K T20123Y A23403G GGG28881AAC

EPI_ISL_420724
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/20139058304/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T C28153T

EPI_ISL_420734
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/20139060804/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420743
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/20139062804/2020
 G11083T C14805T T17247C C21638M G26144T G29477K C29625T

EPI_ISL_420755
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/20140039304/2020
 C241T C3037T C6696T C8752T C14408T C17125A A20268G A23403G

EPI_ISL_420766
 2020-03-27 2020-04-06
 United Kingdom hCoV-19/England/20142060404/2020
 G11083T C14805T C23707T G26144T C28826T

EPI_ISL_421176
 2020-03-27 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_2006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421177
 2020-03-27 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_2107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11704T A12410G C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421178
 2020-03-27 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_2208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2227T C3037T C14408T G16744A A20268G G21190A A23403G G26152A T26301G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421179
 2020-03-27 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_2309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C14408T A20268G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421180
 2020-03-27 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_2410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G A24367C C27998T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421796
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/201380028/2020
 C241T C2416T C3037T G11528A C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_421798
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/201380034/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G C25460T G25563T

EPI_ISL_421802
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/201380040/2020
 A2480G C2558T G3250K G11083T C14805T G26144T

EPI_ISL_421837
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20138082804/2020
 C241T G2164A C3037T C5869Y C8320T C14408T G16197T A23403G GGG28881AAC

EPI_ISL_421839
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20138083204/2020
 C241T T365Y C3037T C4456Y C10594Y C14408T A23403G A26530R G28739T

EPI_ISL_421865
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139008704/2020
 A2480G C2558T C8078T C8917T G11083T C14805T G26144T

EPI_ISL_421866
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139009004/2020
 C241T C3037T C14408T C16289T T17291Y G18534K C18698T A23403G G25429T C26195T

EPI_ISL_421867
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139009204/2020
 A2480G C2558T A10828C G11083T C14805T G26144T

EPI_ISL_421882
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139021604/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_421885
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139022504/2020
 C241T C3037T G10523S C14408T C21034Y A23403G G25429T

EPI_ISL_421890
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139024004/2020
 C241T C3037T C6681Y C14408T A23403G A27969R GGG28881AAC

EPI_ISL_421894
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139024804/2020
 C241T C2416T C3037T C14408T C14786T A19338R G20578T A23403G T25485C G25563T

EPI_ISL_421915
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139031504/2020
 A2480G C2558T A4015T G9111A G11083T C14805T G17671R G26144T

EPI_ISL_421916
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139031804/2020
 A2480G C2558T T5218Y C7011T G7160C G11083T C14805T T22516Y C23533T G26144T

EPI_ISL_421918
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139032404/2020
 A1515G G4510T C9223T A10912G G11083T C14805T T17247C G20931T G26144T

EPI_ISL_421921
 2020-03-27 2020-04-09
 United Kingdom hCoV-19/England/20139033404/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422019
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-265E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A2480G C2558T C7165T G11083T C14805T A23702T G26144T

EPI_ISL_422020
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2682A/2020
 A1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_422021
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2665D/2020
 ATTAAAGGTT1- G1440A C1722T G2891A G28851T

EPI_ISL_422025
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-263DE/2020
 AT1- C241T C3037T G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_422026
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-263FC/2020
 AT1- G1440A G2891A C9438T C25669T C25685T G28851T

EPI_ISL_422027
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2672D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G

EPI_ISL_422028
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2631A/2020
 G1440A G2891A C25669T A27198G G28851T

EPI_ISL_422032
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2649F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422033
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2681B/2020
 A1- C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_422037
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2663F/2020
 C241T C3037T C14408T A23403G

EPI_ISL_422046
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2666C/2020
 A1- C241T C3037T C14408T G19101T C19170T G19509A A23403G C25480T GGG28881AAC

EPI_ISL_422048
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26918/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422052
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26884/2020
 ATTA1- G1440A G2891A C10956T A11399G G21753T A27669G

EPI_ISL_422070
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26839/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_422074
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26954/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_422083
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2624A/2020
 C241T C3037T C6990T C14408T A23403G C27476T

EPI_ISL_422098
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26848/2020
 A1- C241T C3037T C5506T G14241T C14408T C19151T A23403G

EPI_ISL_422102
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26444/2020
 AT1- C241T C3037T C14396T C14408T A23403G GGG28881AAC

EPI_ISL_422109
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-266F3/2020
 ATTA1- C241T C3037T C6990T C14408T A23403G

EPI_ISL_422112
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26417/2020
 ATTA1- C241T C3037T C14408T A23403G

EPI_ISL_422119
 2020-03-27 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26C5B/2020
 ATTAA1- C241T C3037T C14408T A17121W C21242T A23403G GGG28881AAC

EPI_ISL_422569 LR878053
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/Friesland_4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4649T C14408T C21627T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422756 LR877929
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422762 LR877950
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422764 LR877957
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422765 LR877962
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422766 LR877953
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422767 LR877954
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T4114G C8770T C28087T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422768 LR877961
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C2268T C27005T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422769 LR877951
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422771 LR877964
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422772 LR877883
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C C21846T C22624A G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422774 LR877956
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12781T C27005T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422902 LR877926
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G G28628T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422948 LR877919
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422949 LR877922
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G20006T G26144T C28253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422950 LR877924
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422951 LR877923
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A22784T A23403G G28628T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422952 LR877913
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8561A C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422954 LR877963
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T T18630C A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422955 LR877960
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10369T G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422956 LR877968
 2020-03-27 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C8293A C11109T C14408T C19402T A23403G G25563T G26439T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423328
 2020-03-27 2020-04-12
 United Kingdom hCoV-19/England/20138084904/2020
 C241T C3037T C11866Y C12525T C14408T G20056K A23403G GGG28881AAC

EPI_ISL_423346
 2020-03-27 2020-04-12
 United Kingdom hCoV-19/England/20139016704/2020
 C241T C3037T A10948G C14408T C16726T A20262G A23403G C27542T GGG28881AAC

EPI_ISL_423414
 2020-03-27 2020-04-12
 United Kingdom hCoV-19/England/20140071604/2020
 A1034R A2480G C2558T C6666Y G8422R G11083T C14805T G26144T

EPI_ISL_424557
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/537/2020
 A2480G C2558T G11083T C14805T G26144T C26781T

EPI_ISL_424558
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/538/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424559
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/539/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424560
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/540/2020
 A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_424563
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/543/2020
 C241T C1059T C3037T C12880T C14408T A23403G G25563T

EPI_ISL_424564
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/544/2020
 C5142T G11083T C14805T T17247C C21855T G26144T

EPI_ISL_424571
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/551/2020
 C241T C3037T A10323G C14408T C16575T A20268G A23403G

EPI_ISL_424573
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/553/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424574
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/554/2020
 C241T C3037T C14408T A23403G C25831T GGG28881AAC

EPI_ISL_424576
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/556/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424577
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/557/2020
 ATG1605- C20270T G23608T A29683T G29736A

EPI_ISL_424578
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/558/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424580
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/560/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T G28812T GGG28881AAC

EPI_ISL_424582
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/562/2020
 C241T C3037T A10323G C12068G C14408T A20268G C21855T A23403G

EPI_ISL_424597
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/577/2020
 C241T C3037T A11839G T12015G C14408T G16377T T19839C A23403G G23856A GGG28881AAC

EPI_ISL_424598
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/578/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_424599
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/579/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424601
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/581/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424602
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/582/2020
 C241T C1779T C3037T A8072G C14408T A23403G T26294C GGG28881AAC

EPI_ISL_424603
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/583/2020
 C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_424604
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/584/2020
 C241T C313T C3037T C11979T C14408T A23403G GGG28881AAC

EPI_ISL_424605
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/585/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424612
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/592/2020
 G1440A G2891A A4140G

EPI_ISL_424613
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/593/2020
 C241T C3037T T9853C C14408T C14980T A23403G A26530G

EPI_ISL_424614
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/594/2020
 C241T C3037T C14408T C14980T A23403G A26530G

EPI_ISL_424615
 2020-03-27 2020-04-13
 Iceland hCoV-19/Iceland/595/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425310
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/England/CAMB-745AE/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425311
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/England/CAMB-745BD/2020
 A187G C241T C3037T C14408T A23403G C24133T

EPI_ISL_425951
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB232/2020
 C241T C292T C3037T C14408T A20268G A23403G

EPI_ISL_425952
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB234/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_425954
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB248/2020
 C241T C3037T G5230T C14408T A20268G A23403G

EPI_ISL_425958
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB270/2020
 C241T C3037T T14079C C14408T A23403G GGG28881AAC

EPI_ISL_425962
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB278/2020
 C241T C3037T C12513T C14408T A23403G C25350T

EPI_ISL_425963
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB283/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_425964
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB287/2020
 C241T C3037T C3244T C14408T A23403G C25433T G27147T

EPI_ISL_425965
 2020-03-27 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB288/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_426064 MT345871
 2020-03-27 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4355/2020
 A1G C36T C241T T833C C1059T C3037T C6354T C14408T A23403G A24014G G25563T C27964T

EPI_ISL_426065 MT345872
 2020-03-27 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T G29862A G29864A TG29867AA C29870A

EPI_ISL_426068 MT345877
 2020-03-27 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4380/2020
 A31T C36T C241T C1059T C3037T C11289T C13170T CC14407TT A23403G G25563T

EPI_ISL_426073 MT345886
 2020-03-27 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- A31T C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C28093T C29520T G29864A TG29867AA C29870A

EPI_ISL_426298
 2020-03-27 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-31488-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426301
 2020-03-27 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-31302-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C6198T C14408T C18877T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426303
 2020-03-27 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-31364-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426312
 2020-03-27 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-30878-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426321
 2020-03-27 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-31617-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C4423T C5221T C14408T A23403G G25563T C26177T G29688T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426455 MT350237
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C14925T A23403G G25563T C29870A

EPI_ISL_426461 MT350243
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0053/2020
 ATTAAA1- C241T T1918C C3037T C14408T C18877T A23403G G25563T G28300T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426534
 2020-03-27 2020-04-17
 United States hCoV-19/USA/AZ-TG271435/2020
 T490A A2565G C3177T C8782T C10954T C15960T T18736C G19684T C22802G A22811T C22986T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426551
 2020-03-27 2020-04-17
 United States hCoV-19/USA/AZ-TG271896/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426552
 2020-03-27 2020-04-17
 United States hCoV-19/USA/AZ-TG271898/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426553
 2020-03-27 2020-04-17
 United States hCoV-19/USA/AZ-TG271900/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426861 MT451415
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC606/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_426865 MT451419
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC611/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_426883 MT517420
 2020-03-27 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_1/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C3177A C6843T G11083T C14408T C19961T A23403G G25563T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_426884 MT517421
 2020-03-27 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_4/2020
 ATTAAAGGTT1- C241T C541T C835T C1059T C3037T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426885 MT517422
 2020-03-27 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_8/2020
 ATTAAAGGTT1- C241T C3037T G3955T C14408T A23403G G25534T C27005T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_426892 MT517429
 2020-03-27 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_17/2020
 ATTAAAG1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_426893 MT517430
 2020-03-27 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_18/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_426894 MT517431
 2020-03-27 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_20/2020
 ATTAAAGG1- G160A C241T C3037T C6026T T7438C C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_426895 MT517432
 2020-03-27 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_21/2020
 ATTAAAGGTT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_426899 MT641656
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/NT11/2020
 C241T C3037T C4560T C14408T A23403G C25782T T27299C GGG28881AAC T29148C C29670T

EPI_ISL_426957 MT451461
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC661/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_426958 MT451462
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC662/2020
 C6695A C8782T C17747T A17858G C18060T G23126T A24694T T28144C G29000T

EPI_ISL_426960 MT451463
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC664/2020
 C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_426961 MT451464
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC665/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27812T

EPI_ISL_426962 MT451465
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC666/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_426963 MT451466
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC667/2020
 G1440A G2891A C4668T G29260A

EPI_ISL_426964 MT451467
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC668/2020
 T10600C G11083T C14805T T17247C G22708T G26144T

EPI_ISL_426968 MT451470
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC672/2020
 C241T C3037T C5544T C11941T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_426971 MT451473
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC676/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_426972 MT451474
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC677/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25593C C29296T

EPI_ISL_426973 MT451475
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC678/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_426975 MT451476
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC680/2020
 C1076T G1397A -11075TTT G11083T T28688C A28955T G29742T

EPI_ISL_426976 MT451477
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC681/2020
 C1076T G1397A -11075TTT G11083T T28688C A28955T G29742T

EPI_ISL_427002 MT451499
 2020-03-27 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC718/2020
 C241T C3037T T7438C C12528T C14408T A23403G C29353T

EPI_ISL_427178 MT358678
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T A11742T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427191 MT358691
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427201 MT358702
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3883/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427202 MT358708
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427203 MT358710
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C8782T C17747T A17858G C18060T T28144C AAAA29900-

EPI_ISL_427204 MT358711
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3900/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A31T C36T C5784T C8782T G16957T C17747T A17858G C18060T G26730A T28144C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_427205 MT358712
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427206 MT358713
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A6693G C8782T C17747T A17858G C18060T C25339T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427207 MT358714
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427208
 2020-03-27 2020-04-17
 United States hCoV-19/USA/WA-UW-3917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C2334T C8782T C17747T A17858G C18060T G26152T T28144C -G29863AAAAAA TG29867AA C29870A

EPI_ISL_427209 MT358715
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3918/2020
 AT1- C241T C1059T C3037T C12880T C14408T G17049A A23403G G25563T G29553A

EPI_ISL_427210 MT358716
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3923/2020
 AT1-C C36T C241T C1059T C3037T C6548T A11595G C14408T A23403G G24348T G25563T G29553A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_427211 MT358717
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3932/2020
 ATTAAAGGTTTATA1- C36T C241T C1059T C3037T C6040T C14408T A23403G G25563T GTT26155- AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427212 MT358718
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3935/2020
 A1G C36T C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G C23865T G25563T G29862A G29864A TG29867AA C29870A

EPI_ISL_427213 MT358719
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3939/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_427215 MT358721
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T G11083T C14408T A23403G G25563T G29553A G29862A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_427216 MT358722
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3942/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_427217 MT358723
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3946/2020
 ATTAA1- C36T C241T C1059T C3037T C14408T A23403G C25096T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427218 MT358724
 2020-03-27 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34TWT G354A G6419A C8782T C17747T A17858G C18060T C25521T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_428328
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428329
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428332
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T9518C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428333
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A A10070C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428334
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428335
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428336
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428337
 2020-03-27 2020-04-20
 United States hCoV-19/USA/WI-UW-241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3081C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428684
 2020-03-27 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_20/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_428685
 2020-03-27 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C14408T TACCACTTCAGAGAGCTAGGTGTTGTACATAATCAGGATGTAAACTTACATAGCTCTAG14476- TAG14538CCC TATGCTGCTGACCCTGCTATGCACGCTGCTTCT14560- AGGAGTATGCTGATGTCTTTCATTTGTACTTACAATACATAAGAAAGCTACATGATG16064- A20268G A23403G TTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCTT26359- AGACCACACAAGGCAGATGGGCTATATAAACGTTTT29542- G29734C TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_428700
 2020-03-27 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_2501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3874T C8782T T12364A C18401T A19719T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428701
 2020-03-27 2020-04-21
 Spain hCoV-19/Spain/Madrid_H12_2902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A20268G A23403G C28638T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428894
 2020-03-27 2020-04-22
 Russia hCoV-19/Russia/Buryatia-84506/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428896
 2020-03-27 2020-04-22
 Russia hCoV-19/Russia/Vector_84801/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428906
 2020-03-27 2020-04-22
 Russia hCoV-19/Russia/Buryatia-84504/2020
 C241T C3037T C14408T A23403G C27371T GGG28881AAC

EPI_ISL_428912
 2020-03-27 2020-04-22
 Russia hCoV-19/Russia/Sakhalin-84401/2020
 C241T C1059T C3037T C14408T T21775C A23403G G25563T G28371T

EPI_ISL_428913
 2020-03-27 2020-04-22
 Russia hCoV-19/Russia/Buryatia-84508/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428918
 2020-03-27 2020-04-22
 Russia hCoV-19/Russia/Novosibirsk-84101/2020
 C241T C3037T C12651T C14408T A23403G GGG28881AAC

EPI_ISL_428923
 2020-03-27 2020-04-22
 Russia hCoV-19/Russia/Sverdlovsk-84302/2020
 C241T C541T C1059T C3037T G11083T C14408T C17372T A23403G G25563T

EPI_ISL_429129
 2020-03-27 2020-04-23
 Sweden hCoV-19/Sweden/20-08681/2020
 C241T AAGTCATTT686- C1059T G2808A C3037T C14408T G20709T G21800T A23403G G25563T A26433G

EPI_ISL_429131
 2020-03-27 2020-04-23
 Sweden hCoV-19/Sweden/20-08684/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_429132
 2020-03-27 2020-04-23
 Sweden hCoV-19/Sweden/20-08685/2020
 C241T C1059T C1302T C3037T G3995A C14408T G15451A A23403G C23972A G25563T

EPI_ISL_429622 MT375451
 2020-03-27 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C14408T G16245A A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_429624 MT375453
 2020-03-27 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4769/2020
 ATTAAAGGTTTATACCTT1- C36T C241T C1059T C3037T C14408T A23403G G25563T -29904AA

EPI_ISL_429625 MT375454
 2020-03-27 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C241T C1059T C3037T C10989T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_429627 MT375456
 2020-03-27 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C12488T C14408T A23403G G25563T A29551G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_429784
 2020-03-27 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS5677421/2020
 C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_429975 MT415900
 2020-03-27 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0076/2020
 ATTA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_429977 MT415902
 2020-03-27 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0078/2020
 ATTAAAGGTTTATACC1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_430653 MT451657
 2020-03-27 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC966/2020
 C3096T G4960R T5820Y G13627T C14805T C15540T A19175R G26144T A28338G A29005R G29212T

EPI_ISL_430655 MT451655
 2020-03-27 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC964/2020
 C241T C3037T T7438C T11731Y C14408T T15166C A23403G A26864G C29353T

EPI_ISL_430796
 2020-03-27 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T G11083T C14408T A20268G A23403G C25721G C25904T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_430797
 2020-03-27 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1473T C3037T C14408T A23403G GGG28881AAC G29473A ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_430947 MT412304
 2020-03-27 2020-04-28
 United States SARS-CoV-2/human/USA/ID-UW-4354/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C28093T GG29861AA G29864A TG29867AA C29870A

EPI_ISL_431019
 2020-03-27 2020-04-29
 United States hCoV-19/USA/AK-PHL074/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T A6325M C14408T A23403G G25563T G28044T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_432510
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CB5E4/2020
 C241T C503T C1469T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432539
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CD05A/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29737A

EPI_ISL_432804
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C56AB/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_433338
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C5997T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433344
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T5551C C7423T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433346
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR811/2020
 ATG1605- G5567A C12710T C28854T

EPI_ISL_433348
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T C6040T G11083T C14805T G17790T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433355
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR867/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433356
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T5551C C7423T A29313G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433357
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR901/2020
 ATG1605- C6968T A10770G C12710T C28854T

EPI_ISL_433358
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR902/2020
 ATG1605- A10770G C12710T C25466T C28854T

EPI_ISL_433359
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR903/2020
 ATG1605- A10770G C12710T C28854T

EPI_ISL_433744
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78504/2020
 C241T C3037T C14408T C19366T A23403G GGG28881AAC

EPI_ISL_433746
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78540/2020
 A2480G C2558T G11083T C14805T T19479C G26144T

EPI_ISL_433816
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79A5F/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433818
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79A9B/2020
 C241T C1912T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433819
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79AB9/2020
 T931C ATG1605- T12418C G20024A G26416C C27920A G29425A

EPI_ISL_433821
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79AD7/2020
 C857T G11083T C14805T C23707T G26144T

EPI_ISL_433823
 2020-03-27 2020-04-29
 United Kingdom hCoV-19/England/CAMB-79AF5/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434131 MT632787
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S371/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434136 MT632888
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S376/2020
 G1401A C8782T C17747T A17858G C18060T T28144C T28582C

EPI_ISL_434138 MT632848
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S378/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434139 MT632838
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S379/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434140 MT632942
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S380/2020
 C8782T C17747T A17858G C18060T C18264T C24919T T28144C

EPI_ISL_434142 MT632818
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S382/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434143 MT632803
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S383/2020
 C8782T G11083T C17747T A17858G C18060T G19872T G21724T T28144C

EPI_ISL_434144 MT632807
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S384/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T C22286T A23403G G25563T

EPI_ISL_434147 MT632801
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S387/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434148 MT632782
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S388/2020
 C241T C379A C1059T T2244C C3037T G5917A A10761G C14408T C22530T A23403G G25563T

EPI_ISL_434150 MT632819
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S390/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T C21575T A23403G G25563T

EPI_ISL_434279 MT632798
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S519/2020
 C8782T G11083T C17747T A17858G C18060T G19872T G21724T T28144C

EPI_ISL_434319 MT632889
 2020-03-27 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S559/2020
 C241T C1059T C3037T C14408T A23403G C23683T G25563T G29553A

EPI_ISL_434355
 2020-03-27 2020-04-29
 Belgium hCoV-19/Belgium/UGent-37/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_434357
 2020-03-27 2020-04-29
 Belgium hCoV-19/Belgium/UGent-40/2020
 C241T C3037T C14408T C23393T A23403G C26270T C29614T

EPI_ISL_434637 MT295465
 2020-03-27 2020-04-06
 United States SARS-CoV-2/human/USA/UF-2/2020
 ATTAAAGGTT1- T490A C3177T C8782T G11557A T18736C C21575T C24034T T26729C G28077C T28144C A29700G

EPI_ISL_434642
 2020-03-27 2020-04-30
 Sweden hCoV-19/Sweden/20-08686/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_434902
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH274/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434903
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH275/2020
 C241T C1059T C3037T C14408T C23191T A23403G G25563T

EPI_ISL_434904
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH276/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434905
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH277/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434906
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH278/2020
 C241T C1059T C2102T C3037T C14408T A23403G G25563T C26111T

EPI_ISL_434907
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH279/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434908
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH280/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434909
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH281/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_434910
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH282/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_434911
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH283/2020
 C241T C1059T T2803A C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434912
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH284/2020
 C241T C1059T C1917T C3037T C14408T G23120T A23403G G25563T A25822G

EPI_ISL_434913
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH285/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434914
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH287/2020
 C241T C3037T C14408T G15243T A23403G

EPI_ISL_434915
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH289/2020
 C241T C3037T C14408T A15596G C18877T A23403G G25563T

EPI_ISL_434916
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH290/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434917
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH291/2020
 C241T C1059T A2969G C3037T C5140T C14408T A23403G A24710G G25563T G26389T C27964T

EPI_ISL_434918
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH292/2020
 C241T C1059T C3037T C14408T G17808T A23403G G25563T C27964T

EPI_ISL_434919
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH294/2020
 C241T T1918C C3037T C14408T C18877T A23403G G25563T G25906T

EPI_ISL_434920
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH295/2020
 C241T C1059T G1148T C3037T G10096A C14408T A23403G G25563T C27964T

EPI_ISL_434921
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH298/2020
 C241T C1059T C3037T C14408T A23403G C23453T G25563T

EPI_ISL_434935
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH323/2020
 C241T C1059T C3037T G8353T C14408T C17678T A23403G G25563T

EPI_ISL_434945
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH351/2020
 C241T C1059T C3037T C14408T C15525T A23403G G25563T

EPI_ISL_434961
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH370/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C T22981C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434978
 2020-03-27 2020-05-01
 United States hCoV-19/USA/TX-HMH391/2020
 T490A G1439T C2723T C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C C26822T G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435411
 2020-03-27 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00541/2020
 C241T C313T C3037T A8763G C14408T A23403G GGG28881AAC

EPI_ISL_435416
 2020-03-27 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00620/2020
 G1440A G2891A G3242A C15049T G16647T C17185T G27261T G29751C

EPI_ISL_435422
 2020-03-27 2020-05-04
 Hungary hCoV-19/Hungary/MBL-464/2020
 C241T C3037T T11795A C14408T A20268G A23403G

EPI_ISL_435423
 2020-03-27 2020-05-04
 Hungary hCoV-19/Hungary/MBL-465/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_435424
 2020-03-27 2020-05-04
 Hungary hCoV-19/Hungary/MBL-469/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_435448
 2020-03-27 2020-05-05
 United States hCoV-19/USA/LA-SR0144/2020
 T9A C241T C1059T C3037T C14408T T18513C T22054C A23403G G25563T C27964T

EPI_ISL_435449
 2020-03-27 2020-05-05
 United States hCoV-19/USA/LA-SR0145/2020
 C241T C1059T A2745C C3037T C14408T A23403G G25563T C27964T

EPI_ISL_435451
 2020-03-27 2020-05-05
 United States hCoV-19/USA/LA-SR0148/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_436105
 2020-03-27 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-20/2020
 T514C T1523A ATG1605- T1798A G2732C A4143T T8599A C11741T G15629T T21797A T21799A T21819A C26641A -29892AAAAAAAAAAT

EPI_ISL_436346
 2020-03-27 2020-05-06
 Spain hCoV-19/Spain/Valencia251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T T9477A C14805T C17745Y A19426R A22151G G25979T T28144C C28657T C28863T G29745C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436469
 2020-03-27 2020-05-06
 United States hCoV-19/USA/PA-MGSC14-04/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436475
 2020-03-27 2020-05-06
 United States hCoV-19/USA/PA-MGSC21-04/2020
 C241T C3037T C14408T C18877T A23403G A23884G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_436483
 2020-03-27 2020-05-06
 United States hCoV-19/USA/PA-MGSC33-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436484
 2020-03-27 2020-05-06
 United States hCoV-19/USA/PA-MGSC35-05/2020
 C241T C3037T C11878A C14408T C18877T G22302A A22305C C22594T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436485
 2020-03-27 2020-05-06
 United States hCoV-19/USA/PA-MGSC36-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27945T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436487
 2020-03-27 2020-05-06
 United States hCoV-19/USA/PA-MGSC39-05/2020
 C1968T C8782T T10771C C17747T A17858G C18060T T28144C GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436491
 2020-03-27 2020-05-06
 United States hCoV-19/USA/PA-MGSC43-05/2020
 C241T C3037T C9836T G10265A C14408T A23403G GGG28881AAC C29218T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436566 MT706380
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436686
 2020-03-27 2020-05-07
 South Africa hCoV-19/South Africa/KRISP-045/2020
 C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_436870 MT439310
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T T12433Y G13897K C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436874 MT439307
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T G1820R C3037T A5209R C14408T G16852K A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436875 MT439312
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C1059T C3037T C3317T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_436876 MT439316
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T833C C1059T C3037T C14408T C19854T A23403G G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436877 MT439315
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436878 MT439311
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20165/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25563T T27384Y AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_436879 MT439318
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C19421Y A23403G T24832C G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_436880 MT439314
 2020-03-27 2020-05-06
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G960A C1059T C3037T C4202T C14408T A23403G G25563T A28032R AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_436975
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-572/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_436986
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-598/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_436988
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-604/2020
 C241T C1059T C3037T A4548G T8788C C14408T A23403G G25563T G26951A

EPI_ISL_436989
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-605/2020
 C241T C1059T C3037T A4548G T8788C C14408T A23403G G25563T G26951A

EPI_ISL_437031
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-671/2020
 C241T C1059T C3037T C12781T C14408T C15842A G22103C A23403G G25563T

EPI_ISL_437032
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-672/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437035
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-675/2020
 C241T C3037T C7819T C7834T C14408T C16887T A23403G

EPI_ISL_437036
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-676/2020
 C241T C1059T C3037T C12781T C14408T C15842A A23403G G25563T

EPI_ISL_437037
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-679/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27092T

EPI_ISL_437038
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-688/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_437039
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-689/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_437040
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-690/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_437041
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-691/2020
 ATG1605- A25259G C28253A

EPI_ISL_437042
 2020-03-27 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-692/2020
 C241T C1059T C1302T C3037T C14408T C18508T A23403G G25563T G26849C G27047T

EPI_ISL_437191
 2020-03-27 2020-05-08
 Indonesia hCoV-19/Indonesia/JKT-EIJK03/2020
 G11596T

EPI_ISL_437198
 2020-03-27 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG2/2020
 C241T C14408T A23403G

EPI_ISL_437267
 2020-03-27 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0071/2020
 C241T C3037T C14408T G19825T A23403G G25395T GGG28881AAC

EPI_ISL_437305
 2020-03-27 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1418/2020
 ATTAAA1- C241T C3037T C14408T A23403G C26549T GGG28881AAC

EPI_ISL_437306
 2020-03-27 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1450/2020
 ATTAAA1- C884T G1397A G8653T C8683A G11083T T28688C G29742T

EPI_ISL_437310
 2020-03-27 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1081/2020
 ATTAAA1- C241T C3037T C14408T C18877T C22444T A23403G G25563T C28854T

EPI_ISL_437311
 2020-03-27 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1428/2020
 ATTAAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437313
 2020-03-27 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-302/2020
 ATTAAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437317
 2020-03-27 2020-05-08
 Turkey hCoV-19/Turkey/HSGM-1027/2020
 ATTAAA1- C241T C8782T C13476Y G22468T G25314T T28144C G28878A

EPI_ISL_437434
 2020-03-27 2020-05-08
 United States hCoV-19/env/USA/MT-BWRF-0327/2020
 C241T C1059T C3037T G8102T C14408T G14712A C14877T GG22343CC A23403G G25563T G28851T

EPI_ISL_437546
 2020-03-27 2020-05-11
 United States hCoV-19/USA/LA-SR0209/2020
 C241T C1059T C3037T C14408T T18513C T22054C A23403G G25563T C27964T

EPI_ISL_437640
 2020-03-27 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1299/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437667
 2020-03-27 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-745/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_437668
 2020-03-27 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-748/2020
 C241T C1059T C1302T C1387T C3037T C6636T CT6781TC C11074T T12520C C14408T A23403G G25563T C29095T

EPI_ISL_437909 MT459923
 2020-03-27 2020-05-11
 Greece SARS-CoV-2/human/GRC/49_36716/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A5838G A8115G G11083T C14805T T17247C A17961G G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_437937
 2020-03-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0055/2020
 G1440A G2891A C7011T C10369Y C17733T T22521K C23380T G25593C A29865R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438114
 2020-03-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0290/2020
 C241T C1059T C3037T C4993T C6638Y C14408T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438115
 2020-03-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0291/2020
 C241T C1059T C3037T G3351R C7817Y C11152Y C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_438116
 2020-03-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0292/2020
 C241T C3037T G4201K C14408T T22521K A23403G GGG28881RRS TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438117
 2020-03-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0294/2020
 C241T C3037T T12118Y C14408T T22521K A23403G C24642T C27046T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438118
 2020-03-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0295/2020
 C241T C3037T C14408T T22521K A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438119
 2020-03-27 2020-05-12
 Austria hCoV-19/Austria/CeMM0296/2020
 C241T C3037T C14408T A20268G T22521K A23403G G29734C AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_438972
 2020-03-27 2020-05-12
 Japan hCoV-19/Japan/Donner28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11272T C11752T C25587T C25665T C26447T TTA27698- T28912C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_439120
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G T7816A G11083T C14805T T17247C C24023T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439123
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439134
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C313T C3037T G4006T G5155A C14408T C19983T A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440951
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3516/2020
 A2480G C2558T G11083T C12043T C14805T G20679T G26144T

EPI_ISL_440952
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3525/2020
 C241T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T C28807T GGG28881AAC

EPI_ISL_440953
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3534/2020
 C241T AAGTCATTT686- C3037T C14408T A23403G C25350T T27280C

EPI_ISL_440954
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3543/2020
 C241T C3037T G10870T C14408T A23403G C28651T GGG28881AAC

EPI_ISL_440956
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3561/2020
 C241T C3037T C12073T C14408T A23403G C25824T GGG28881AAC

EPI_ISL_440957
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/LOND-D358F/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_440958
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/LOND-D359E/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441690
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/Northern Ireland/NIRE-FAA56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12854T C14408T G18412A A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_443275
 2020-03-27 2020-05-12
 France hCoV-19/France/B5397/2020
 C36T C241T C3037T C10377T C14408T A23403G C27923T G28378A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_443276
 2020-03-27 2020-05-12
 France hCoV-19/France/B5400/2020
 C28T C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T G28378T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_443289
 2020-03-27 2020-05-12
 France hCoV-19/France/B5678/2020
 C241T C2416T C3037T C14408T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_443707
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/BRIS-1252D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C14408T A23403G C27679T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_443780
 2020-03-27 2020-05-12
 United Kingdom hCoV-19/England/BRIS-125347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7042T G8861T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_444859
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-681/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26951A

EPI_ISL_444860
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-682/2020
 C241T C1059T C3037T C12781T C14408T C15842A C21575T A23403G C25499T G25563T

EPI_ISL_444861
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-684/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444862
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-687/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444863
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-694/2020
 C241T C1059T C1302T C3037T C11074T C14408T A23403G G25563T

EPI_ISL_444864
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-700/2020
 G1440A G2891A C4668T G11083T C27535T

EPI_ISL_444866
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-705/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444867
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-707/2020
 C241T T1237C C3037T C14408T G20398A A23403G A26530G

EPI_ISL_444870
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-713/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444872
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-718/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444877
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-726/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444881
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-735/2020
 C241T C1059T C3037T C14408T T21976C A23403G G25563T

EPI_ISL_444883
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-741/2020
 C241T A476G C1059T C3037T G6341A C14408T A23403G G25563T

EPI_ISL_444884
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-742/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444887
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-747/2020
 C241T C3037T A7483G C14408T C18744T A20268G A23403G

EPI_ISL_444912
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-799/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_444915
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-804/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444922
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-819/2020
 C241T C1059T C3037T C14408T T21976C A23403G G25563T G29254T

EPI_ISL_444923
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-821/2020
 C241T C1059T C1302T C3037T C7029T C14408T A23403G G25563T

EPI_ISL_444930
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-835/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444931
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-837/2020
 C241T C3037T C7834T C8357T C14408T A23403G

EPI_ISL_444945
 2020-03-27 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-860/2020
 C241T C1059T C3037T C12781T C14408T C15842A A23403G A23975G G25563T

EPI_ISL_444995
 2020-03-27 2020-05-14
 United States hCoV-19/USA/SC_NHRC_01/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T C29095T C29668T

EPI_ISL_444996
 2020-03-27 2020-05-14
 United States hCoV-19/USA/SC_NHRC_02/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T C29095T

EPI_ISL_445167
 2020-03-27 2020-05-15
 United States hCoV-19/USA/CA-SR0313/2020
 C241T C1059T C3037T G3892T C14408T A23403G G25563T

EPI_ISL_445345
 2020-03-27 2020-05-15
 Chile hCoV-19/Chile/Temuco_11/2020
 ATTAAAGGTTTA1- TTCCCAGGTAA17- C241T C3037T C8389T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447118 MT506546
 2020-03-27 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20321/2020
 C241T C1059T C3037T A5011M C8772Y C10582Y C14408T A23403G G25563T G29402T

EPI_ISL_447285
 2020-03-27 2020-05-17
 Israel hCoV-19/Israel/701002681/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447399
 2020-03-27 2020-05-17
 Israel hCoV-19/Israel/2047004/2020
 C241T C2416T C3037T C14408T A23403G G25563T C26936T AAAAAAAAAAAA29892-

EPI_ISL_447498
 2020-03-27 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10448T C12008T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447500
 2020-03-27 2020-05-17
 Spain hCoV-19/Spain/Alicante/COV000569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447502
 2020-03-27 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C313T C3037T C10156Y C14408T C19170T A23403G G28541T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447503
 2020-03-27 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G G28541T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447505
 2020-03-27 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T AAGTCATTT686- C3037T C5413T C14408T A23403G G28541T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447588 MT422806
 2020-03-27 2020-05-02
 United States SARS-CoV-2/human/USA/UF-4/2020
 C241T C1059T C3037T A4386G C10319T C14408T C22432T A23403G G25563T C27964T

EPI_ISL_447589 MT422807
 2020-03-27 2020-05-02
 United States SARS-CoV-2/human/USA/UF-5/2020
 C241T C1059T C3037T A4386G C10319T C14408T A23403G G25563T C27964T

EPI_ISL_447739
 2020-03-27 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C10507T C14408T C18877T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_447887 MT481927
 2020-03-27 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1136/2020
 ATTAAA1- C241T C1059T C3037T C14408T C17410A C19610T A23403G G25563T C27964T

EPI_ISL_450302
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00240556/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_450303
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00240587/2020
 C241T C313T C3037T C14408T A20055G A23403G C25904T GGG28881AAC

EPI_ISL_450304
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00240652/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_450305
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00240685/2020
 C241T C3037T C14408T C15324T A23403G C25433T T27444C C27847T

EPI_ISL_450306
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00240857/2020
 C241T C2416T C3037T C4755T G14186T C14408T A23403G G25563T T29464A

EPI_ISL_450307
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00240954/2020
 C241T C3037T C14408T G15380T A20268G A23403G

EPI_ISL_450308
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00240979/2020
 C241T C3037T T6614C C14408T A18812G A20268G A23403G G28373T C28854T

EPI_ISL_450309
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241026/2020
 C241T C3037T C8293T C11902T C14408T T18488C A23403G T24739C A26530G

EPI_ISL_450310
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241042/2020
 A1515G C9223T G11083T G12565T C14805T T17247C G26144T

EPI_ISL_450311
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241168/2020
 A158C C241T C3037T CC14407TT C15324T A23403G C25433T

EPI_ISL_450312
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241192/2020
 C241T C3037T C8208T G9267A T9667C C10725T C14408T A23403G G25947T G28361A GGG28881AAC G29745T

EPI_ISL_450313
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241205/2020
 C241T C3037T C14408T C15324T G15463T A23403G C25433T

EPI_ISL_450314
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241208/2020
 C241T C3037T C14408T C15324T A23403G C25433T A26536G

EPI_ISL_450315
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241245/2020
 C241T C3037T C14408T A20268G A23403G G27204T G28001T C28854T

EPI_ISL_450316
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241292/2020
 C241T C3037T C14408T C18877T C22326T A23403G G25563T

EPI_ISL_450317
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241344/2020
 C8782T C26088T T28144C

EPI_ISL_450318
 2020-03-27 2020-05-20
 Canada hCoV-19/Canada/Qc-L00241355/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T G29474T

EPI_ISL_450323
 2020-03-27 2020-05-20
 India hCoV-19/India/CCMB_NIV3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450456 MT499182
 2020-03-27 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1207/2020
 ATTAAAGGTTTATACC1-

EPI_ISL_451095
 2020-03-27 2020-05-23
 Australia hCoV-19/Australia/SAP056/2020
 ATTA1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451096
 2020-03-27 2020-05-23
 Australia hCoV-19/Australia/SAP057/2020
 G4181A C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_451097
 2020-03-27 2020-05-23
 Australia hCoV-19/Australia/SAP058/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_451098
 2020-03-27 2020-05-23
 Australia hCoV-19/Australia/SAP059/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_451186
 2020-03-27 2020-05-23
 Uganda hCoV-19/Uganda/UG004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G10097A C14408T A23403G C23731T C25460T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_452101
 2020-03-27 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-SSI-763/2020
 C241T C3037T G12395A C14408T G17014T C18744T A20268G A23403G

EPI_ISL_452601
 2020-03-27 2020-05-27
 Spain hCoV-19/Spain/COV001085/2020
 A929G G11083T A12986G C14805T C16969T C23707T G26144T G28899T

EPI_ISL_452637
 2020-03-27 2020-05-27
 Spain hCoV-19/Spain/COV000935/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_452644
 2020-03-27 2020-05-27
 Spain hCoV-19/Spain/COV000927/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_452651
 2020-03-27 2020-05-27
 Spain hCoV-19/Spain/COV000918/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_453854
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1545T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453855
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T T9995G C14408T A23403G C28093T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453860
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453870
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T C15924T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453872
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T C14408T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453873
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T G16558T A23403G C23603T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453876
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T AAGTCATTT686- C3037T C3140T T4033C C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454171
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23589T C23731T C25710T GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454307
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T A23403G C25546T G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454348
 2020-03-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C920T C3037T C6968T A13947T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454359
 2020-03-27 2020-05-28
 United States hCoV-19/USA/PA-MGEL73/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28368A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454636 MT533233
 2020-03-27 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1278/2020
 C8782T C17747Y A17858G C18060T A24694T T28144C C29095T G29383A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_454774
 2020-03-27 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10025/2020
 ATTAAA1- C241T C3037T C14408T C19170T G19509A A23403G C26313T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_454792
 2020-03-27 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordHolland_10043/2020
 ATTAAA1- C241T C1059T T1537C C3037T T13006C C14408T A23403G G24821T G25563T C25688T AAAAAA29898-

EPI_ISL_454956
 2020-03-27 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-206/2020
 

EPI_ISL_455205
 2020-03-27 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T C14408T A16179G A23403G T27098C G28514T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455206
 2020-03-27 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T C14408T A16179G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455429
 2020-03-27 2020-05-29
 Nigeria hCoV-19/Nigeria/OY008-CV29/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T T29821C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_455440
 2020-03-27 2020-05-29
 Poland hCoV-19/Poland/PL_P27/2020
 C241T C1059T C3037T C3743T C14408T A23403G G25563T

EPI_ISL_455640
 2020-03-27 2020-06-01
 India hCoV-19/India/S4/2020
 C241T C3037T C14408T A23403G C24384A G28221T

EPI_ISL_455702
 2020-03-27 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_3096/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455703
 2020-03-27 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_3085/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC C28905T

EPI_ISL_455992
 2020-03-27 2020-06-01
 United States hCoV-19/USA/TX-EVTL149/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456004
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC767/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_456006
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC769/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26885T

EPI_ISL_456008
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC771/2020
 C241T C3037T C14408T C18457T C18877T A23403G G25563T T28339A

EPI_ISL_456010
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC773/2020
 C241T C1059T C3037T C14408T C18601T A23403G G25563T

EPI_ISL_456011
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC774/2020
 C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T T27384C G29540A

EPI_ISL_456013
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC776/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T

EPI_ISL_456014
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC777/2020
 C241T C2003T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_456016
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC779/2020
 C241T C1059T C3037T C14408T C16616T G20125A A23403G G25563T

EPI_ISL_456018
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC781/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T C29215T

EPI_ISL_456021
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC784/2020
 G45T C241T C1059T C3037T C10332T C11916T C14408T C18998T A23403G G25563T G29540A C29774T

EPI_ISL_456025
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC788/2020
 C241T C619T C1059T C3037T C14117T C14408T A14912G A23403G G25563T

EPI_ISL_456026
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC789/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456028
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC792/2020
 C241T C1059T C3037T C13517T C14408T A23403G G25563T

EPI_ISL_456030
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC794/2020
 C241T CC1059TT C3037T C14408T A23403G G25563T

EPI_ISL_456032
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC796/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26577G

EPI_ISL_456034
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC798/2020
 C241T C1059T C3037T C10851T C12789T C14408T A23403G G25563T

EPI_ISL_456036
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC800/2020
 C241T C1059T C3037T A10329G C14408T A23403G G25563T

EPI_ISL_456037
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC801/2020
 C241T C1059T C3037T C4113T C11916T C14408T T18567C C18998T A23403G G24197T G25563T G29540A

EPI_ISL_456038
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC802/2020
 C241T C1059T C3037T C14408T A23403G G25563T T26171A

EPI_ISL_456040
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC804/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_456041
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC805/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456043
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC807/2020
 C241T C1059T C3037T C8240T C14408T A23403G G25563T

EPI_ISL_456044
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC808/2020
 C241T A263G C3037T C14408T A23403G

EPI_ISL_456045
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC809/2020
 C241T C3037T C14408T A20268G A21137G A23403G

EPI_ISL_456047
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC811/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_456052
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC816/2020
 C241T C1059T C3037T C3294T C3397T C14408T C16616T A23403G G25563T

EPI_ISL_456055
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC819/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_456058
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC822/2020
 C241T C1059T C3037T C8937T A11430G C11956T C14408T A23403G G25563T TCACCGA29729-

EPI_ISL_456061
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC825/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T

EPI_ISL_456065
 2020-03-27 2020-06-01
 United States hCoV-19/USA/NY-NYUMC829/2020
 C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T

EPI_ISL_456234
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1624/2020
 C241T C3037T C6543T C14408T A20268G A23403G G29734C

EPI_ISL_456261
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1809/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456262
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1814/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456263
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1816/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456264
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1817/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456265
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1818/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456266
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1821/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456267
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1822/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T

EPI_ISL_456268
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1823/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456270
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1825/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456271
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1826/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456272
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1827/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456273
 2020-03-27 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1828/2020
 C241T C1059T C3037T C5239T C14408T C16260T A23403G C28821A

EPI_ISL_456889
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR853/2020
 A2196C G11083T C14805T C17172A T17247C G26144T

EPI_ISL_456896
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB2730/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_456897
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB2742/2020
 C241T C3037T C9223T C14408T A23403G

EPI_ISL_456901
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB285/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_456903
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB290/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_456905
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB291/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_456906
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB295/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_457168
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/England/EXET-135DDD/2020
 ATG1605- C20270T C28087T A29683T

EPI_ISL_457171
 2020-03-27 2020-06-02
 United Kingdom hCoV-19/England/EXET-135E34/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_458180
 2020-03-27 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0327210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3092T C4002T G10097A C11339T C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458181
 2020-03-27 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0327211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A23894T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458182
 2020-03-27 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0327212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8394T G9923A C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458183
 2020-03-27 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0327213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458184
 2020-03-27 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0327214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A15192G G18007A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458185
 2020-03-27 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0327215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C9891T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458186
 2020-03-27 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0327216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3828T G11083T C14408T C15324T A23403G T24811A A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459859
 2020-03-27 2020-06-04
 Chile hCoV-19/Chile/Melipilla-32205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459874
 2020-03-27 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-017/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2416T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459875
 2020-03-27 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-018/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C10507T C14408T C18877T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856CT

EPI_ISL_460108 MT520183
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C2416T C3037T A5725G C14408T A23403G C24096A G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_460110 MT520185
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00485/2020
 ATTAAAGGTTTATACCTTCCCAG1- G105T C241T C3037T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460113 MT520188
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00184/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2416T C3037T C14408T A23403G G25563T G26233T GATT27378- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460142 MT520217
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00210/2020
 ATTAAA1- C241T C3037T C14408T C18877T A23403G G25563T C25702T G28904T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460156 MT520231
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00502/2020
 ATTAAA1- C241T C2003T C2416T C2453T C3037T T10216C C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460185 MT520260
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00488/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460204 MT520279
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00486/2020
 ATTAAAGGT1- C241T C2416T C3037T G8131T G10631T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460229 MT520304
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00185/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460242 MT520317
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00206/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25563T G28077T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460258 MT520333
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_460283 MT520358
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00170/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_460286 MT520361
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00484/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460288 MT520363
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00203/2020
 ATTAAA1- C241T C2416T C3037T A6818G C14408T A23403G G23909T G25563T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_460306 MT520381
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00489/2020
 ATTAAA1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460322 MT520397
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00214/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_460329 MT520404
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00188/2020
 ATTA1- G105T C241T C3037T C14408T C17373T C18877T A23403G G25563T AAAAAAAAAAAAAAAA29888-

EPI_ISL_460343 MT520418
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G1890T C2416T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460362 MT520437
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00183/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T T2884C C3037T G11083T G11534A C11916T C14408T C18998T A23403G G25563T G29540A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460400 MT520475
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T A5725G C14408T A23403G C24096A G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460410 MT520485
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00200/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T G19962A A23403G G25563T AAAAAAAAAAAAA29891-

EPI_ISL_460427 MT520502
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00495/2020
 ATTAAA1- C241T C2416T C3037T C14408T C15324T A23403G C23996T G25563T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_460437 MT520512
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00202/2020
 ATTAAA1- C241T C1288T C2416T C3037T C6541T C14408T A23403G G25563T G26233T AAAAAAAAAA29894-

EPI_ISL_460445 MT520520
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00505/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2416T C3037T T8665G C14408T A23403G G25563T G26233T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460459 MT520534
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00499/2020
 ATTAAA1- C241T C2416T C3037T C8228T A11782G C14408T T19026G A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_460468 MT520543
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00199/2020
 ATTAAA1- C241T C2416T C3037T C4155A C14408T A23403G G25563T T26035C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460471 MT520546
 2020-03-27 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00205/2020
 ATTAAA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460673
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C12896T C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460693
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G208T C241T C1059T C3037T T13006C C14408T G20433T A23403G G25563T C25688T G29751T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460699
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T C26645T G27382T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460717
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460737
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460754
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460755
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G T26187C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461011
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C21697A A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461018
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C854T G1440A G2891A C4655T C6982T G8422A C22323T C27804T C29546A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461264
 2020-03-27 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C5051T C14408T A23403G A24862G C28629T C29253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461422
 2020-03-27 2020-06-06
 United States hCoV-19/USA/WA-UW-3904/2020
 ATTAAAGGTTTATACCTT1- C36T A6693G C8782T C13115T C17747T A17858G C18060T T28144C TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461424
 2020-03-27 2020-06-06
 United States hCoV-19/USA/ID-UW-4376/2020
 TTA2CCT A6T C241T T400C T833C C1059T C3037T C5934T C14408T A23403G G25563T C27964T GG29861AA G29864A TG29867AA C29870A

EPI_ISL_461430
 2020-03-27 2020-06-06
 United States hCoV-19/USA/WA-UW-4746/2020
 ATTAAAGG1- ATACCTTCCCAGGTAACAAACC12- C36T C241T C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_461705
 2020-03-27 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24388T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_461706
 2020-03-27 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB286/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_461707
 2020-03-27 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB294/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_461708
 2020-03-27 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB306/2020
 C241T C3037T C10798A C13862T C14408T A23403G G28361C C28836T

EPI_ISL_462171
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/VJB-0327317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6507G C14408T A23403G G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462172
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/DAL-0327318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2710T C3037T C11094T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462173
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/VA-0327319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25049T G25563T T27585C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462174
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/BM-0327320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1666C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462175
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/AF-0327321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462198
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/MR-0327344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462199
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/CF-0327345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462200
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/VME-0327346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462202
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/FCA-0327348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14358T C14805T T17247C C20312T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462203
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/GGO-0327349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462207
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/DV-0327353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C10802T G11083T C14408T C21590T A23403G G23405A G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462223
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/DAA-0327369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T G20527A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462244
 2020-03-27 2020-06-08
 Belgium hCoV-19/Belgium/HLE-0327390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G17122T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462349
 2020-03-27 2020-06-08
 Singapore hCoV-19/Singapore/231/2020
 C2470T A8381R G11083T C14805T T17247C C21789T G26144T AAAAAAAAAAAA29892-

EPI_ISL_462468
 2020-03-27 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7366/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15324T G20164T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_462469
 2020-03-27 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7367/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462958
 2020-03-27 2020-06-08
 United States hCoV-19/USA/WY-WYPHL-00066/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C16611T A20465G A23403G G25563T AA29902-

EPI_ISL_463005 MT499219
 2020-03-27 2020-05-20
 Tunisia SARS-CoV-2/human/TUN/COV0425/2020
 TTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC2- T41C C241T C2416T C3037T G8371T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_464113
 2020-03-27 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C28854T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_464114
 2020-03-27 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C28854T GGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29777-

EPI_ISL_465680
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240594/2020
 ATT1- C241T C1059T C3037T C14408T A15523G A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465681
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240642/2020
 ATT1- C241T C1912T C3037T C14408T C23191T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465682
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240666/2020
 ATT1- C241T C1059T C3037T C11916T G12322A C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465685
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240788/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T C29835T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465686
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240796/2020
 ATT1- T490A C3177T C8782T A11600G T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465687
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240804/2020
 ATT1- C241T G701T C1059T C3037T C6896T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465688
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240846/2020
 ATT1- C241T C3037T C14408T C15324T A23403G A23933G C25433T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465689
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240851/2020
 ATT1- C241T C3037T C14408T C15324T A23403G A23933G C25433T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465690
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240866/2020
 ATT1- C241T C1059T C1912T C3037T C14408T A23403G G25563T C29503T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465691
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240891/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465692
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240893/2020
 ATT1- C241T G701T C1059T C3037T C6896T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465693
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00240947/2020
 ATT1- C241T C3037T C14408T G15380T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465694
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241007/2020
 ATT1- C140T A1515G A6925G C9223T G12565T C14805T C16073T T17247C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465695
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241074/2020
 ATT1- C241T C1059T C3037T C14408T C17528Y A23403G G25217T G25563T C29835T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465696
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241102/2020
 ATT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465698
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241115/2020
 ATT1- C241T C1059T C3037T G11083T C14408T A21137R A23403G G25217T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465699
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241158/2020
 ATT1- C241T C635Y C1059T C3037T C4331Y A12964G C14408T C23202Y A23403G C25521T G25563T G28001K AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465701
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241251/2020
 ATT1- C241T C3037T C14408T C15324T G15463T A23403G C25433T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465702
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241319/2020
 ATT1- C241T C3037T C14408T A23403G C24213Y C27046T GGG28881AAC C29754Y AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465703
 2020-03-27 2020-06-11
 Canada hCoV-19/Canada/Qc-L00241349/2020
 ATT1- C241T C3037T C14408T C15280T C15324T A23403G G26143K T28137C C29555T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_465868
 2020-03-27 2020-06-11
 United Kingdom hCoV-19/England/20140002404/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_465989
 2020-03-27 2020-06-11
 United Kingdom hCoV-19/England/20144021904/2020
 C241T C3037T T8777C G10097A C14408T A23403G C23731T GGG28881AAC

EPI_ISL_465994
 2020-03-27 2020-06-11
 United Kingdom hCoV-19/England/20144023304/2020
 G11083T C14805T T17247C T19266C C25416T G26144T

EPI_ISL_465995
 2020-03-27 2020-06-11
 United Kingdom hCoV-19/England/20144023504/2020
 C241T G246K G2759K C3037T C5173T C14408T G15652K G17280S G21776K A23403G T25264Y G25266K GGG28881AAC

EPI_ISL_466046
 2020-03-27 2020-06-11
 United Kingdom hCoV-19/England/20146064004/2020
 C241T C3037T C14408T T15939C A23403G GGG28881AAC

EPI_ISL_467441
 2020-03-27 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0035/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_467442
 2020-03-27 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0040/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_467809
 2020-03-27 2020-06-15
 United States hCoV-19/USA/CA-CSMC1/2020
 C241T C1059T C3037T T8248A C14408T A23403G G25563T

EPI_ISL_467967
 2020-03-27 2020-06-16
 United States hCoV-19/USA/CA-SR0440/2020
 C241T C1997T C3037T C4582T C11102T C14408T A20268G A23403G

EPI_ISL_468446 MT628174
 2020-03-27 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1497/2020
 G8K C8782T G13435R C17747T A17858G C18060T A24694T T28144C C29095T

EPI_ISL_468447 MT628175
 2020-03-27 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1498/2020
 ATTAAAGGTTTATACCT1- C241T C3037T A9244R C14408T A23403G C23802Y C27577M TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468525 MT628248
 2020-03-27 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1596/2020
 C241T C3037T G7452T C8389T C10741Y C14408T A23403G T25520A G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_468526 MT628249
 2020-03-27 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1597/2020
 C241T C1284Y C3037T G7452T C8389T C10741Y G13249K C14408T A23403G T25520A G25563T AAAAAAAAAAAAA29891-

EPI_ISL_469276
 2020-03-27 2020-06-18
 United Arab Emirates hCoV-19/United Arab Emirates/L0287/2020
 C884T G1397A G8653T G11083T A25980C T28688C G29742T

EPI_ISL_469280
 2020-03-27 2020-06-18
 United Arab Emirates hCoV-19/United Arab Emirates/L6841/2020
 G11230T A25443G T28144C G28167A G28878A G29742A

EPI_ISL_470539
 2020-03-27 2020-06-18
 Russia hCoV-19/Russia/CRIE130014/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T A27872T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_470863
 2020-03-27 2020-06-19
 Australia hCoV-19/Australia/WA46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471180
 2020-03-27 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471201
 2020-03-27 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A17713G C18171A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471203
 2020-03-27 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T G16381A T17877C C20316T G25500T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471260
 2020-03-27 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471262
 2020-03-27 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471967
 2020-03-27 2020-06-23
 United Kingdom hCoV-19/England/EXET-13737F/2020
 C556T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_475574
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC10/2020
 A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C G29742T

EPI_ISL_475629
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC2/2020
 C241T C3037T C14408T C18877T A23234C A23403G G25563T

EPI_ISL_475640
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC3/2020
 C241T C1059T C3037T T13575C C14408T T16506C A23403G C25466T G25563T

EPI_ISL_475651
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC4/2020
 C241T C3037T A5570G C14408T A21949C A23403G GGG28881AAC

EPI_ISL_475673
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC6/2020
 A12G C241T C1059T C3037T C14408T A23403G G25563T C29218T

EPI_ISL_475684
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC7/2020
 C241T C882T C1684T C3037T A11600G C14408T C18877T A23403G G25563T

EPI_ISL_475695
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC8/2020
 C241T C379A C1059T C3037T T9961C C14408T A23403G G25563T

EPI_ISL_475706
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC9/2020
 C241T C1059T C3037T C14408T T22939C A23403G G25563T

EPI_ISL_475707
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC90/2020
 C241T C1059T G3665T C4347T G4352T C5497T T5653C A6635G G7787T T8023C T8477C G12177T C15315T C15469T G17561T T22170C A23403G G25563T A28466T A29419C

EPI_ISL_475708
 2020-03-27 2020-06-23
 United States hCoV-19/USA/CA-CSMC91/2020
 G1212C T4531C C8782T C18060T G22661T T28144C

EPI_ISL_475718 MT655132
 2020-03-27 2020-06-23
 Spain SARS-CoV-2/human/ESP/HUD-65067673/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A2480G C2558T G11083T C14805T C17934T G26144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_475721 MT655135
 2020-03-27 2020-06-23
 Spain SARS-CoV-2/human/ESP/HUD-98203801/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T6394C C8782T C17470T C26088T G26709A T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_475774
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6638Y C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475775
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C16332Y C21304A G25979T G26211K T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475776
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475850
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7011T G25593C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475884
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7728T C14408T A23403G C27881T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475887
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26022Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475916
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C C17410T C27881T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475921
 2020-03-27 2020-06-25
 Austria hCoV-19/Austria/CeMM0572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15957T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476143
 2020-03-27 2020-06-25
 Sweden hCoV-19/Sweden/20-08533/2020
 C241T C1710T C3037T C14408T G22583A A23403G C26801T

EPI_ISL_476144
 2020-03-27 2020-06-25
 Sweden hCoV-19/Sweden/20-08608/2020
 C241T C3037T T7171C C14408T A23403G GGG28881AAC C28887T C29614T

EPI_ISL_476786
 2020-03-27 2020-06-25
 United States hCoV-19/USA/CA-CZB-1769/2020
 A1- C10956T T15922Y C28253T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_476827
 2020-03-27 2020-06-26
 Benin hCoV-19/Benin/1092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C92S C241T C1059T T2339W C3037Y C3096Y G9950T C14408T C15324T T17990K A22404T G22468T A23403G T23569Y T28144Y G28167R G28878R TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_477623
 2020-03-27 2020-06-29
 Hungary hCoV-19/Hungary/US-482w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477817
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/CAMB-78522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C29525- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478411
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6BA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G25311T G26144T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478412
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6BB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C14408T C14724T A20276G A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478413
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6BC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T22912G A23403G G25429T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478414
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6BD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C913T C3037T C14408T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478591
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/NORT-284D74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478592
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/NORT-284D83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22225T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478593
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/NORT-284D92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9996T G10097A T13216G C14408T A19960G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478594
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/NORT-284DB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T G11083T T11107C C14805T G16206T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478596
 2020-03-27 2020-06-30
 United Kingdom hCoV-19/England/NORT-284E80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T A29371G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478669 MT675956
 2020-03-27 2020-06-29
 Turkey SARS-CoV-2/human/TUR/KOC-IST-B303/2020
 ATTAAAGGTTTATA1- C241T C2113T C3037T C7765T C14408T C17690T C18877T T22126G A23403G G25563T -29854V AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_479616
 2020-03-27 2020-06-30
 Italy hCoV-19/Italy/FVG-ICGEB_bal1A/2020
 ATTAAAGG1- C241T C3037T C5284T C14408T A23403G AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_479617
 2020-03-27 2020-06-30
 Italy hCoV-19/Italy/FVG-ICGEB_bal1B/2020
 A1- C241T C3037T C5284T C14408T A23403G AAAAAAAAAAA29893-

EPI_ISL_479627
 2020-03-27 2020-07-01
 Canada hCoV-19/Canada/NB-206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18904T A23403G G25606T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479630
 2020-03-27 2020-07-01
 Canada hCoV-19/Canada/NB-214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479631
 2020-03-27 2020-07-01
 Canada hCoV-19/Canada/NB-215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479972
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_479973
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479992
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C3037T C14408T A23403G G25563T G26730T C29708T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_479993
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C14408T A23403G G25563T G26730T C29708T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479994
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C3037T C14408T A23403G G25563T G26730T C29708T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480018
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G4300T C14408T A23403G G25249T G25563C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480019
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C313T C3037T G4300T C14408T A23403G G25249T G25563C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480020
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480023
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T G1738T C3037T C14408T G16221T A17829T A23403G A26530G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480025
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C9430T G9652T C14408T G22199T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480086
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T G26713T T28144C C29739T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480087
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T G26713T T28144C C29739T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480118
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C6312A C13730T C17678T T19785C C23929T C26425T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480180
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T G1738T C3037T C14408T G16221T A17829T A23403G A26530G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480181
 2020-03-27 2020-07-01
 Japan hCoV-19/Japan/PG-0523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C3037T C14408T G16221T A17829T A23403G A26530G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_481262
 2020-03-27 2020-07-03
 Germany hCoV-19/Germany/BY-RKI-N-0003/2020
 C241T C3037T G5699R T8426Y A11755G G13993T C14408T C23127T A23403G A24453R C25614T C27046T GGG28881AAC

EPI_ISL_482320
 2020-03-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-038/2020
 G1440A G2891A G3892A C10507T

EPI_ISL_482321
 2020-03-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-039/2020
 C8782T C9565T C15240T C17747T A17858G C18060T C21774T T28144C

EPI_ISL_482322
 2020-03-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-040/2020
 C241T C3037T C13665A C14408T A23403G C28714T GGG28881AAC

EPI_ISL_482455
 2020-03-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-220/2020
 C241T C3037T C11563T C14408T C18877T C21058T A23403G G25563T

EPI_ISL_482456
 2020-03-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-221/2020
 G11083T C14805T G26144T G27415A TT27760AC

EPI_ISL_482458
 2020-03-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-223/2020
 C241T C1059T C3037T A6889G C9857T C14408T G19711A A23403G G25563T

EPI_ISL_482460
 2020-03-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-225/2020
 C241T C1059T C3037T C14408T A23403G G24794A G25302T G25563T G27758T

EPI_ISL_483088
 2020-03-27 2020-07-07
 Australia hCoV-19/Australia/SAP291/2020
 ATTA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483092
 2020-03-27 2020-07-07
 Australia hCoV-19/Australia/SAP309/2020
 A1- C1716T G11083T C14805T T17247C G26144T G29742T

EPI_ISL_483093
 2020-03-27 2020-07-07
 Australia hCoV-19/Australia/SAP310/2020
 ATTAAA1- G11083T C14805T T17247C G26144T G29742T

EPI_ISL_483101
 2020-03-27 2020-07-07
 Australia hCoV-19/Australia/SAP321/2020
 ATTA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483105
 2020-03-27 2020-07-07
 Australia hCoV-19/Australia/SAP327/2020
 ATTA1- C241T AAGTCATTT686- C1059T C3037T C7043T C14408T G19656T A23403G G25563T C26408T A26433G

EPI_ISL_483108
 2020-03-27 2020-07-07
 Australia hCoV-19/Australia/SAP330/2020
 A1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T AA29902-

EPI_ISL_483109
 2020-03-27 2020-07-07
 Australia hCoV-19/Australia/SAP331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T T833C C1059T C3037T C14408T A23403G C25047T G25563T C27964T C29774T

EPI_ISL_483304
 2020-03-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0689-SAN/2020
 ATTAAA1- C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_483305
 2020-03-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0690-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483321
 2020-03-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0718-SAN/2020
 ATTA1- C241T C1059T C1887T C3037T C5956T C14408T A17615G A23403G G25563T

EPI_ISL_483322
 2020-03-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0719-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483323
 2020-03-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0721-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T C3037T A8252G C14408T A23403G G25563T

EPI_ISL_483610
 2020-03-27 2020-07-08
 Singapore hCoV-19/Singapore/587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T A5353G C14408T A23403G G25429T AAAAAAAAAAAA29892-

EPI_ISL_483617
 2020-03-27 2020-07-08
 Singapore hCoV-19/Singapore/594/2020
 ATTA1- C241T C1059T C3037T C14408T G16935T A23403G G25563T G28368A AAAAAAAAAAAA29892-

EPI_ISL_484059
 2020-03-27 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DAA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

EPI_ISL_484715
 2020-03-27 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4720T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484770
 2020-03-27 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485926
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-2671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_485927
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-2674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T T8883C TT8885AA C11653T C14408T A19173C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_485929
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-3085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_485932
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-3104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C75Y C241T C3037T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_485933
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-3106/2020
 ATTAAAGGTTT1- C36T C66T C241T C1059T C3037T C6196T C14408T A23403G G25563T -29904AAAAAAAAAAAAAAAA

EPI_ISL_485934
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-3108/2020
 ATTAAAGGTTT1- AAC34TTT C241T C1059T C3037T C6033T C14408T C21575T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485936
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-3118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AC35WT C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_485938
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-3120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGT1- C241T C1059T C3037T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_485942
 2020-03-27 2020-07-10
 United States hCoV-19/USA/CT-UW-3127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T C14408T A23403G G25563T C28863T A29903-

EPI_ISL_485999
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T C14408T C18252T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_486030
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486037
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T G626A C1059T C3037T C12880T C14408T C19263T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_486039
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTA1- C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486059
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2953/2020
 ATTAAA1- C36T C8782T C17747T A17858G C18060T C23604A T25783C T28144C C29870A

EPI_ISL_486064
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2971/2020
 AT1- A4T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486066
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2980/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_486067
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2982/2020
 ATTAAA1- C36T C241T C1059T C3037T C6040T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486068
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C36T C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A TG29867AA C29870A

EPI_ISL_486069
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2986/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AC35WT C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T -29865AAAAA TG29867AA C29870A

EPI_ISL_486070
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C8782T C17747T A17858G C18060T G24815C T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486071
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-2997/2020
 A4- C36T C241T C1059T C3037T C6040T C14408T A23403G G25563T C29870V AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486074
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34WWT C5806T C8782T C10818T C14937T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_486075
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3007/2020
 ATTAAA1- C241T C1059T C1912T C3037T C6312T T9958C C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_486076
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3008/2020
 A1- TA3CG C36T C241T C1059T C3037T C6040T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486077
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3009/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486078
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3012/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G127T C8782T T10881C C17747T A17858G C18060T A27317G C28093T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_486079
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_486083
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3041/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A31T AAC34TTT C8782T C16767T C17747T A17858G C18060T T28144C C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_486084
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3046/2020
 A1- AAC34TTT C8782T C17747T A17858G C18060T T28144C C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486085
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3048/2020
 AT1GA A4T C36T C8782T C17747T A17858G C18060T T28144C C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486086
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C36T C8782T C17747T A17858G C18060T T28144C C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486087
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T G29864R TG29867AA C29870A -29904AAAAAAAAAAAAAA

EPI_ISL_486088
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3069/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C8782T A9737G C13584T C17326T C17747T A17858G A17884G C18060T G19645T T28144C C29061T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_486089
 2020-03-27 2020-07-10
 United States hCoV-19/USA/WA-UW-3070/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_487648
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487728
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T C14805T T17247C G26144T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487764
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T G19009T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487788
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487794
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4900A C14408T A23403G C29514Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487811
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T G22104T A23403G C28826T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487824
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G C21627T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487869
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12400T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487883
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487918
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7716T C14408T C16289T C17555M A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487933
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21861C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488463
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-282C2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T T25202K C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488479
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-28265D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1477A A2480G C2558T G11083T C14805T C22088T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488495
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-2828B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488507
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-294A10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T C17750Y A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488544
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-2827A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T25202K C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488552
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-294E50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8861R C14408T A23403G G28827C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488571
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-294C92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2264C C3037T C14408T C19269T G20489T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488573
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-2826D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G T3313C C9223T G11083T C14805T T17247C A21625G T25202K G26144T C27923T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488574
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-284DDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488576
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-294AA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T C23854T T25202K G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488581
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-2949B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1733G C3037T C14408T G15243T A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488585
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-294AC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4300T C10626T G11083T C14805T G26144T G27806A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488599
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-294A89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25612Y G26144T C27999T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488644
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-294A7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T A15942G T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488646
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-2828FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488647
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-282990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488662
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-282972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17678T C21812Y A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488715
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-284C1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488899
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G448K C3037T A8062G T13728C C14408T C17285T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488901
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488924
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488943
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488958
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6651T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488969
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18267T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488977
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488980
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13728C C14408T C17285T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488984
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488988
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21861C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488996
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4904T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489002
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27998T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489018
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T G11944T C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489020
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6633T C14408T A23403G C29666G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489047
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G2123A C7423T G17847A A28293G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489418
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-17193B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489429
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171A65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489455
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171A29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489470
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171A83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C6318T G7675T C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489547
 2020-03-27 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171A0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1801G C3037T G3831A T7441Y C14408T T17139W A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490449
 2020-03-27 2020-07-15
 United Kingdom hCoV-19/England/NORT-2948DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490451
 2020-03-27 2020-07-15
 United Kingdom hCoV-19/England/NORT-2948F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G28456A C28854T C29741T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490452
 2020-03-27 2020-07-15
 United Kingdom hCoV-19/England/NORT-294904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490976
 2020-03-27 2020-07-15
 Peru hCoV-20/Peru/INS-020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTG1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491010
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3188/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A31T C36T C241T C1059T C3037T C14408T A23403G G25563T -29904AAA

EPI_ISL_491013
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_491014
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T T17813C A23403G T24658C G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_491020
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T A761G C1059T C3037T C14408T G17338T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_491021
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3401/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A C29870H -29904AAAAAAAAAAAAAA

EPI_ISL_491023
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3415/2020
 A1G AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G29778A AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_491024
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3489/2020
 A1G AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AA

EPI_ISL_491025
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3490/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_491026
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3493/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_491027
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3497/2020
 ATTAAAGGTTTATACCTTC1- A31T AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_491028
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3500/2020
 ATTAAAGGTTTA1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_491029
 2020-03-27 2020-07-15
 United States hCoV-19/USA/WA-UW-3511/2020
 ATTAAA1- A31T C36T C8782T T9477A C14805T G25979T T28144C C28657T C28863T -29904AAAAAAAAAA

EPI_ISL_491104
 2020-03-27 2020-07-15
 United States hCoV-19/USA/SC-DHEC-0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T G5069T C8782T T18736C C24034T T26729C G28077C T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494598
 2020-03-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1432/2020
 ATTAAAG1- C241T C1059T C1887T C3037T C5956T C14408T A17615G A23403G G25563T

EPI_ISL_494601
 2020-03-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1435/2020
 ATTA1- C241T C1059T C3037T A8252G C14408T A23403G G25563T

EPI_ISL_494603
 2020-03-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T C1059T C3037T C14408T A23403G G25563T C25728T

EPI_ISL_494610
 2020-03-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1449/2020
 ATTA1- C241T G942A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_494612
 2020-03-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1452/2020
 A1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_494615
 2020-03-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1456/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_496370
 2020-03-27 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1709/2020
 A1- C241T C1059T C3037T A8252G C14408T A23403G G25563T

EPI_ISL_500369
 2020-03-27 2020-07-28
 Spain hCoV-19/Spain/COV005933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T T13006C C14408T C17004T A23403G G25563T C25688T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500386
 2020-03-27 2020-07-28
 Spain hCoV-19/Spain/COV005952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T G17302T A23403G T24229A G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_500500
 2020-03-27 2020-07-29
 United States hCoV-19/USA/CT-UW-3129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T G6902T C11916T C14408T C18998T A23403G G25563T G29540A -G29863AAA TG29867AA C29870A

EPI_ISL_500512
 2020-03-27 2020-07-29
 United States hCoV-19/USA/WA-UW-MAYO57/2020
 ATTAAAGGTTTATACCT1- C36T C241T C1059T C3037T C10319T C14408T A18211C A23403G G25563T C27964T A29143C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_500705
 2020-03-27 2020-07-29
 Australia hCoV-19/Australia/NSW2310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501193
 2020-03-27 2020-07-31
 Malaysia hCoV-19/Malaysia/2297/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C6312A -11075TTT G11083T C13730T C23929T C28311T

EPI_ISL_501194
 2020-03-27 2020-07-31
 Malaysia hCoV-19/Malaysia/2363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C6312A T7621C G11083T C13730T C21627T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_506978
 2020-03-27 2020-08-02
 South Korea hCoV-19/Korea/KCDC2184/2020
 C241T C3037T G10835T C14408T A23403G GGG28881AAC

EPI_ISL_506981
 2020-03-27 2020-08-02
 South Korea hCoV-19/Korea/KCDC2187/2020
 ATTAAAGGTTT1- A12T C241T C3037T T4654C G5108A C14408T A23403G GGG28881AAC

EPI_ISL_507008
 2020-03-27 2020-08-03
 Sweden hCoV-19/Sweden/SVA200327SZ-NSW/2020
 C36T C241T C1059T C3037T C14408T G15380T A23403G G25563T C29025T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_507018 MT820469
 2020-03-27 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507127
 2020-03-27 2020-08-03
 United Kingdom hCoV-19/England/NORT-2A6213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507894
 2020-03-27 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C1063Y C3037T C5986T C14408T G22104K A23403G G25563T C26645T C27752Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507903
 2020-03-27 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_507977
 2020-03-27 2020-08-03
 United States hCoV-19/USA/MN-MDH-1390/2020
 ATTA1- C241T C1059T G1463A C3037T G7557A C8818T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_507978
 2020-03-27 2020-08-03
 United States hCoV-19/USA/MN-MDH-1391/2020
 ATTAAA1- C241T C3037T C14408T C14571T A20268G A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_507979
 2020-03-27 2020-08-03
 United States hCoV-19/USA/MN-MDH-1392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T A17858G C18060T A24694T T28144C G28812T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_507980
 2020-03-27 2020-08-03
 United States hCoV-19/USA/MN-MDH-1393/2020
 ATTA1- C241T C1059T G1463A C3037T G7557A C8818T C14408T A23403G G25563T C29803T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_508896
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA14951/2020
 ATTAAAG1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508897
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA14953/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508898
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA14993/2020
 ATTAAAG1- C241T C3037T G8179T C14408T C21575T A23403G G27870T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508899
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA14997/2020
 ATTAAAG1- C241T C3037T C14408T A23403G G25563T A28624T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508900
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA15119/2020
 ATTAAAG1- C241T C3037T C14408T A23403G G25563T G26754T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508901
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA15126/2020
 ATTAAAGGTTT1- C241T C1059T G2659T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508902
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA15224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508903
 2020-03-27 2020-08-04
 France hCoV-19/France/ARA15296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2416T C3037T G8371T C14408T A23403G A25531C G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509713 MT844026
 2020-03-27 2020-08-05
 Belize SARS-CoV-2/human/BLZ/CDC-6851/2020
 C241T AAGTCATTT686- C1059T G2808A C3037T G3965A C14408T G16935T G22781A A23403G G25563T A26433G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509752 MT846456
 2020-03-27 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0694/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509753 MT846457
 2020-03-27 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0695/2020
 ATTAAAG1- C241T C3037T C14408T C18877T C19011T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509759 MT846463
 2020-03-27 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0701/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T A28885G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509763 MT846467
 2020-03-27 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C11916T C14408T C14471T C18998T A23403G G25563T G29540A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509764 MT846468
 2020-03-27 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C17690T A23403G T26677C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509767 MT846471
 2020-03-27 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0709/2020
 AT1- C241T C1059T C3037T C5884T C13487T C14408T C22858T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_510942
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3653T C14408T C21242T GCTTTA22289- A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510943
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T T11890C C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510981
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510987
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- ATG1605- C3040T C20270T A29683T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511107
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G C29640T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511108
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G2808A C3037T C5175T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511109
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C10776A G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511110
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C10776A G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511111
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511112
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511113
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C5175T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511114
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511116
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511117
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C9561T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511118
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C335T C8782T T9477A C9491T C14805T G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511119
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511121
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511122
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T ATG518- G2808A C3037T C5192T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511123
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511124
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511125
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511126
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C10776A G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511127
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511128
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511129
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511130
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511131
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511132
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511133
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511135
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511136
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT0877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G376T C1059T C3037T T13006C C14408T G22899T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511307
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511341
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C4090T G10265A C14408T A15972G A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511346
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4090T G10265A C14408T A15972G A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511347
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29779C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511348
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T2290C C2416T C3037T C14408T C14786T C19884T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511350
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6539T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511352
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6539T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511353
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6539T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511376
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511382
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511383
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29013T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511384
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511399
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511406
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C2143T C8782T T9477A C14805T C16481T G25785T G25979T T28144C C28657T C28863T C29200T G29300C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511409
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511420
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25339T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511438
 2020-03-27 2020-08-07
 Portugal hCoV-19/Portugal/PT1479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C20402T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511523
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT0974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511524
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT0975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C21575T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511525
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT0976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T C9700T G11083T C11956T C14805T T24052C G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511553
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C106T C241T C3037T C14408T A23403G C26408T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511557
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G16853T A23403G C26936T GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511558
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7564A C14408T A23403G G25273T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511614
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511616
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C5175T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511617
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511618
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T TTTGGGTGTTTA21982- A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511619
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4162T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511622
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511623
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G376T C1059T C3037T T13006C C14408T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511627
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C13426T C14408T G17944T A20268G A23403G C29640T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511629
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T C18166T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511633
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C9778T A11782G C14408T C17104T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511636
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511649
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T T10076C C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511651
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25047T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511652
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G393A C3037T C3140T C14408T A23403G G24077T G27014T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511654
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G10805A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511655
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T G29513T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511658
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11455T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511659
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511660
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T T20688C A23403G G25552T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511679
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C12312T C14408T G16853T T19189C A23403G C26936T GGG28881AAC A29396G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511680
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C3037T C3045T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511763
 2020-03-27 2020-08-08
 Portugal hCoV-19/Portugal/PT1220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1244A C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_514490
 2020-03-27 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D267C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514651 MT892998
 2020-03-27 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11224T C14408T C15654T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514665 MT893012
 2020-03-27 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_515182
 2020-03-27 2020-08-18
 Ghana hCoV-19/Ghana/TTH10/2020
 ATTA1- C8782T G25606T T28144C G28878A G29742A

EPI_ISL_515336
 2020-03-27 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0054/2020
 ATTA1- C241T C1059T C1758T C3037T G10870T G11123A C14408T A23403G G25563T

EPI_ISL_515902
 2020-03-27 2020-08-20
 United States hCoV-19/USA/CA-CDPH009/2020
 ATTAAAG1- C8782T T9094C T12883C C16466Y C17747Y A17858G C18060Y C25916M T26171A T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516329
 2020-03-27 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T C27213Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516331
 2020-03-27 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_517004
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- C12710T C14396T C28854T

EPI_ISL_517037
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A T13216G C14408T A21137G A23403G C23731T GGG28881AAC

EPI_ISL_517064
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1623C C3037T C4577T C14408T C21145T A23403G C27046T GGG28881AAC

EPI_ISL_517068
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A778E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_517070
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A77BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T T14655C C14805T G26144T C29870A

EPI_ISL_517071
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A77CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C583T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_517076
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G21624T A23403G C27661T GGG28881AAC

EPI_ISL_517079
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A784F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G18105T A23403G T26790G GGG28881AAC

EPI_ISL_517087
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A78D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2470T G11083T C14805T T17247C G26144T

EPI_ISL_517183
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A8592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T G11417T C14408T A23403G GGG28881AAC

EPI_ISL_517214
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A87E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2480G C2558T G11083T C12374Y C14805T G26144T

EPI_ISL_517222
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A886C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_517223
 2020-03-27 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A887B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- ATG1605- G27703T

EPI_ISL_518856 MT919995
 2020-03-27 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G20749A A23403G G25523T G25563T T27869C C28824T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_518857 MT919996
 2020-03-27 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1463/2020
 ATTAAAGGTTTATACCTTCCCA1- A38R C241T C1059T C3037T C6268A C6606T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518859 MT919998
 2020-03-27 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T G1946T C3037T C14408T A23403G A28858G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_518866 MT920005
 2020-03-27 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1472/2020
 ATTAAAGGTTTATACCTTCCCAG1- C8782T A17858G C18060T A24694T T28144C G28812T G28985T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518870 MT920009
 2020-03-27 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1476/2020
 ATTAAA1- C241T C3037T C14408T C18877T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523289
 2020-03-27 2020-08-26
 Netherlands hCoV-19/Netherlands/LI-EMC-84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26305T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523504
 2020-03-27 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523929
 2020-03-27 2020-08-27
 Germany hCoV-19/Germany/NW-58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G23593T T23671C C29272T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523941
 2020-03-27 2020-08-27
 Germany hCoV-19/Germany/NW-70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C14220T A14502G C20016T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523951
 2020-03-27 2020-08-27
 United Kingdom hCoV-19/England/203380362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T1368C C6990T C14805Y C23707Y GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_524566
 2020-03-27 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-171564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A14463G C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525573
 2020-03-27 2020-08-31
 Italy hCoV-19/Italy/BAS-UniMI-2956/2020
 ATTAAAGGTTT1- C241T C3037T A10948G C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_525635
 2020-03-27 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-31058-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C823T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525636
 2020-03-27 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-31562-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G28237C G28646A AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_526818
 2020-03-27 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0600/2020
 AT1- C241T C2416T C3037T G4523A A10323G C10712T C14408T A23403G G25563T

EPI_ISL_529223
 2020-03-27 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61EE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C392T ATG1605- A1904G A3958G C5826T C8090T C10789T G16236T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529615
 2020-03-27 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61EB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529617
 2020-03-27 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61F1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530048
 2020-03-27 2020-09-10
 Spain hCoV-19/Spain/MD-LP44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T18358C A20268G A23403G G27626T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530273
 2020-03-27 2020-09-11
 Australia hCoV-19/Australia/QLD1013/2020/P1
 ATTAAAGG1- C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_534816
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2DF7/2020
 C241T G3014T C3037T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_534846
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B328E/2020
 C241T C3037T C14408T A23403G G25429T C26461T

EPI_ISL_534859
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3488/2020
 C241T C3037T C14408T A20268G A23403G C28854T AA29902-

EPI_ISL_534862
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B34F1/2020
 G11083T C14805T T17247C C24130T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_534865
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B353A/2020
 C241T C3037T C14408T A23403G G24038T GGG28881AAC A29903-

EPI_ISL_534905
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3B92/2020
 C241T C3037T C14408T C18877T A23403G G25563T A29903-

EPI_ISL_534931
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4135/2020
 A1515G C3311T C9223T C10277T G11083T C14805T T17247C G26144T AAAAAAA29897R

EPI_ISL_534934
 2020-03-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4162/2020
 C241T C3037T C14408T G22592T A23403G GGG28881AAC

EPI_ISL_536268
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00240292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C11916T C14408T C18998T G21786A A23403G G25563T G29540A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536269
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00240404/2020
 ATTAAAG1- C241T C1059T C3037T C14408T T21633C A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536270
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00240414/2020
 ATTA1- C241T C3037T C14408T C15324T A23403G C25433T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536272
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00240479/2020
 ATTAAA1- C241T C3037T A13768G C14408T A20268G A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536273
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00240536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25217T G25563T C29835T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536274
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00240552/2020
 ATTAAAGGTTTATAC1- C8782T C17747T A17858G C18060T A24694T T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536280
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536281
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536282
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536289
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25217T G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_536337
 2020-03-27 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T A2649R C3037T C14408T A23403G G25563T C28606T AAAAAAAA29896-

EPI_ISL_537459
 2020-03-27 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T GAGTACGATCGAGT29745- CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538327
 2020-03-27 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A23403G G25563T G27261T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538802
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2170C C3037T C14408T G15438T C19318T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538939
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9DC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538940
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9CB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538947
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9CC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T C5730T C14408T A23403G GGG28881AAC C29274Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538951
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9CD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T C18486T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538976
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9C9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T G21724T C22326T A23403G G23587C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539031
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A85BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A5484G T28160C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539053
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A85EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539054
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A883D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1427Y C3037T G11083T C14408T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539077
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539081
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A882E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4331T C14408T C16114T A23403G C23929T G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539159
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539162
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539186
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5879R C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539196
 2020-03-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8C40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539574
 2020-03-27 2020-09-19
 Gabon hCoV-19/Gabon/ITM-K023/2020
 C241T C3037T C14322T C14408T C15324T A23403G G28202A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539575
 2020-03-27 2020-09-19
 Gabon hCoV-19/Gabon/ITM-K027/2020
 ATT1- C8782T C9223T G11230T T28144C G28878A G29742A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539576
 2020-03-27 2020-09-19
 Gabon hCoV-19/Gabon/ITM-K028/2020
 C241T C1059T C3037T C9891T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541372
 2020-03-27 2020-09-22
 Brazil hCoV-19/Brazil/SE-6529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- A223T C241T C3037T C6258T C14408T A23403G G25088T GGG28881AAC GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541769
 2020-03-27 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286EB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542821
 2020-03-27 2020-09-23
 United States hCoV-19/USA/TX-HMH-1761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547484
 2020-03-27 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24023T A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547485
 2020-03-27 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24023T A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547533
 2020-03-27 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G C26313T GGG28881AAC G29688C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548127
 2020-03-27 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20VR2581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29239A G29540A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_548353
 2020-03-27 2020-09-26
 United States hCoV-19/USA/CA-CZB-3645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCT1- C241T C1059T C3037T A7130R C7945T CC14407TT A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_560573
 2020-03-27 2020-09-29
 France hCoV-19/France/CVL8271/2020
 A26- C28T C36T C241T C3037T C14408T C21233T A23403G A23691G C24621T GGG28881AAC C29743A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_565972
 2020-03-27 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568694
 2020-03-27 2020-10-02
 Indonesia hCoV-19/Indonesia/SA-EIJK-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2449T C25614T C29415T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_569355
 2020-03-27 2020-10-02
 France hCoV-19/France/IHU-0187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G3338T C14408T G15438T C21597T A23403G G25563T C25731T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569393
 2020-03-27 2020-10-02
 France hCoV-19/France/IHU-0230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T G25909T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569478
 2020-03-27 2020-10-02
 France hCoV-19/France/IHU-0379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G C27476T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

MT293174
 2020-03-27 2020-04-03
 United States SARS-CoV-2/human/USAOR-UW409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904A

MT459988
 2020-03-27 2020-05-12
 United States SARS-CoV-2/human/USA/SC-NHRC-01/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T C29095T C29668T

MT459989
 2020-03-27 2020-05-12
 United States SARS-CoV-2/human/USA/SC-NHRC-02/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T C29095T

MT477848
 2020-03-27 2020-05-14
 United States SARS-CoV-2/human/USA/AK074/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T A6325M C14408T A23403G G25563T G28044T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT670023
 2020-03-27 2020-06-25
 Chile SARS-CoV-2/human/CHL/2020-32205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT671823
 2020-03-27 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1769/2020
 A1- C10956T T15922Y C28253T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT706360
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706361
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706364
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T9518C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706365
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A A10070C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706366
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706367
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706368
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706369
 2020-03-27 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3081C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT764179
 2020-03-27 2020-07-15
 United States SARS-CoV-2/human/USA/COVID20-0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T G5069T C8782T T18736C C24034T T26729C G28077C T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT810568
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0440-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1997T C3037T C4582T C11102T C14408T A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810783
 2020-03-27 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1709-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810816
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1432-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C5956T C14408T A17615G A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810819
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1435-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810821
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1437-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C920T C1059T C3037T C14408T A23403G G25563T C25728T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810828
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1449-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G942A C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810830
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1452-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810833
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1456-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810972
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0313-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G3892T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811317
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0689-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811318
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0690-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811334
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0718-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C5956T C14408T A17615G A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811335
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0719-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811336
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0721-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811658
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0144-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T T18513C T22054C A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811659
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0145-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2745C C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811662
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0148-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811689
 2020-03-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0209-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T T18513C T22054C A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MW008569
 2020-03-27 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-040N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- T490A C3177T G4720A C8782T C16887T T18736C C24034T T26729C G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW047315
 2020-03-27 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000513/2020
 A3003T C8782T C10811T T10813A C17747T A17858G C18060T A24694T T28144C

MW047316
 2020-03-27 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000514/2020
 C241T C1059T C3037T C14408T A23403G G25563T

MW047317
 2020-03-27 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000515/2020
 C241T C3037T C8664T C14408T C15026T T15264C A23403G C27575T

NMDC60013246
 2020-03-27 2020-06-01
 China hCoV-19/Guangzhou/ID040/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T G1013K C2416T G11230T A20347T G22471T G25563T T28144C G29742A G29868A

EPI_ISL_420027 MT322424
 2020-03-28 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0046/2020
 C241T C1059T C1917T C3037T C14408T A23403G G25563T A29869W

EPI_ISL_420140
 2020-03-28 2020-04-05
 Georgia hCoV-19/Georgia/Tb-1352/2020
 C241T C1059T C3037T C14408T G17679T A23403G G25563T -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_420157
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C079E/2020
 C241T C3037T C14408T G22427A A23403G GGG28881AAC

EPI_ISL_420158
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C07CB/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_420193
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C044C/2020
 C241T C2471T C3037T C14408T C16289T A23403G G25429T T29826C

EPI_ISL_420194
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C028E/2020
 C241T C3037T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_420196
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0251/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420197
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C03B8/2020
 C241T C3037T A11839G T13212C C14408T T19839C A23403G GGG28881AAC

EPI_ISL_420198
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0206/2020
 G431A ATG1605- A11474G C13381T C20270T T27063C GAT27382CTC T28251C A29683T

EPI_ISL_420199
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0233/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420208
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C02AC/2020
 C241T C3037T C14408T A23403G C28849T GGG28881AAC

EPI_ISL_420211
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0224/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_420219
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C037C/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420220
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C035E/2020
 C241T C3037T C14408T C18713T A23403G C26894T GGG28881AAC

EPI_ISL_420689
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139046604/2020
 C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_420690
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139046704/2020
 C241T C3037T C14408T C15324T A23403G C28603T GGG28881AAC

EPI_ISL_420693
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139047404/2020
 A1515G C9223T G11083T C14805T T17247C A17799G G26144T

EPI_ISL_420694
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139047504/2020
 A1350T A2480G C2558T C4455Y A6818W T7730Y G11083T C14805T C19186T A20163R C22802Y C23086Y G26144T

EPI_ISL_420721
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139057604/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420722
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139057704/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420723
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139058104/2020
 C241T C3037T C4002T G10097A C13536T C14408T C21646T A23403G C23731T GGG28881AAC

EPI_ISL_420727
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139059004/2020
 C241T C2416T C3037T C14408T C14786T G19398T G20578T A23403G G25563T C28153T G29399S

EPI_ISL_420728
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139059504/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_420731
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139060004/2020
 C241T A2480G C2558T G11083T C14198T C14805T C25317T G26144T

EPI_ISL_420732
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139060404/2020
 C241T C3037T C14408T C21762Y A23403G GGG28881AAC

EPI_ISL_420733
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139060504/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420742
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139062704/2020
 T13Y C241T C3037T C9541M C14408T C18115Y A23403G GGG28881AAC

EPI_ISL_420745
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139063504/2020
 C241T C1059T C3037T C14408T C16329T A23403G C23536T G25563T C25731T C28697Y C29625T

EPI_ISL_420747
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20139063704/2020
 A2480G C2558T C3787Y A4015T G9111A C10232T G11083T C14183Y C14805T G26144T

EPI_ISL_420774
 2020-03-28 2020-04-06
 United Kingdom hCoV-19/England/20142062604/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_420849
 2020-03-28 2020-04-07
 Democratic Republic of the Congo hCoV-19/DRC/523/2020
 ATTAAAGGTTTATAC1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29750-

EPI_ISL_420877
 2020-03-28 2020-04-07
 Australia hCoV-19/Australia/VIC-CBA3/2020
 C241T C3037T T11638C C14408T C22326T A23403G GGG28881AAC C29708T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_422016
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T4186C G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_422018
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2673C/2020
 AT1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_422034
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-27012/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_422042
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-264BD/2020
 C241T C1059T C3037T C10376T C14408T C15738Y G18583T A23403G G24368T G25563T G29773T

EPI_ISL_422057
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-268A2/2020
 ATTAAAGGTT1- C241T C3037T G4510A C14408T T20479Y A23403G

EPI_ISL_422072
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26F52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T457C A2480G C2558T G7684A G11083T T11182C C12400Y C14391T C14805T G23593T G26144T C26885T C29253T

EPI_ISL_422082
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26BD6/2020
 C241T C3037T C6990T C14408T G14866T G15181A A23403G A24779R

EPI_ISL_422091
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-264DB/2020
 A2480G C2558T C2607T G11083T C14805T A17656G G26144T

EPI_ISL_422095
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2705E/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T C20148T A23403G GGG28881AAC

EPI_ISL_422096
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2675A/2020
 ATTA1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_422113
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26CB5/2020
 ATTAAAG1- C241Y G1440R G2891R C3037Y G11801R C14408Y T19839Y A23403R G24077R G25552K G28851K C28868Y GGG28881RRS

EPI_ISL_422125
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-27003/2020
 ATTA1- A2480G C2558T T9964C G11083T C12897T C14805T G26144T G28562A

EPI_ISL_422131
 2020-03-28 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-27030/2020
 A1- C241T C3037T G9190C C14408T T17126C A20268G A23403G

EPI_ISL_422568 LR878049
 2020-03-28 2020-04-11
 Netherlands hCoV-19/Netherlands/Friesland_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422571 LR878056
 2020-03-28 2020-04-11
 Netherlands hCoV-19/Netherlands/Friesland_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T C17977T A20268G C20740A A23403G G26501T G28975T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422572 LR878064
 2020-03-28 2020-04-11
 Netherlands hCoV-19/Netherlands/Friesland_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T A20047G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422761 LR877935
 2020-03-28 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422776 LR877966
 2020-03-28 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G18651T A23503T G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423353
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20139065204/2020
 C241T C3037T C14408T G20569T A23403G GGG28881AAC

EPI_ISL_423356
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20139067504/2020
 A2480G C2558T C11074T G11083T C14805T G26144T C28331T G28380T

EPI_ISL_423358
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20139068804/2020
 A1515G C9223T G11083T C14805T T17247C A17799G G26144T

EPI_ISL_423373
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140002804/2020
 A2480G C2558T G11083T C14805T C19862Y G25311T G26144T

EPI_ISL_423375
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140003402/2020
 C241T C3037T C14408T C15324Y A23403G G28690K GGG28881RRS

EPI_ISL_423387
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140009404/2020
 C241T C3037T C14408T A19336M A23403G

EPI_ISL_423395
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140064704/2020
 ATG1605- C17898T C18570T C23191T C26124T

EPI_ISL_423396
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140064804/2020
 ATG1605- C17898T C18570T C23191T C26124T

EPI_ISL_423411
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140071104/2020
 C241T C1059T C1437T C3037T T13006C C14408T T20367Y T23042Y A23403G G25563T C25688T

EPI_ISL_423417
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140072304/2020
 C241T C2675A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423418
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20140072504/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423841
 2020-03-28 2020-04-12
 United Kingdom hCoV-19/England/20132106104/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_424567
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/547/2020
 C241T C3037T C14408T A23403G G27430A GGG28881AAC

EPI_ISL_424568
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/548/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424581
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/561/2020
 ATG1605- C20270T G25352T A29683T

EPI_ISL_424584
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/564/2020
 C241T C2918T C3037T A10323G C14408T A20268G A23403G C24337T

EPI_ISL_424585
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/565/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_424588
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/568/2020
 C241T C3037T A10323G C14408T A20268G A23403G G26951T

EPI_ISL_424590
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/570/2020
 C241T C3037T C14408T A23403G G27430A GGG28881AAC C29733T

EPI_ISL_424591
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/571/2020
 C241T C1059T C1385T C3037T A4448G C14408T A23403G G25563T

EPI_ISL_424593
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/573/2020
 C241T C3037T A10323G C14408T A20268G C20759T A23403G

EPI_ISL_424595
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/575/2020
 C241T C3037T C3253T C14408T A23403G C24054T A25958G C27046T G27621T GGG28881AAC

EPI_ISL_424596
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/576/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_424606
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/586/2020
 C5142T C10623T G11083T C14805T G16852T T17247C A25625G G26144T G26308T C28732T

EPI_ISL_424616
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/596/2020
 C241T C3037T C14408T A23403G A26530G G29706T

EPI_ISL_424617
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/597/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_424619
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/599/2020
 C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_424621
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/601/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_424622
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/602/2020
 C241T C1059T C1302T G1439T C3037T G4370A C14408T A23403G G25563T

EPI_ISL_424624
 2020-03-28 2020-04-13
 Iceland hCoV-19/Iceland/604/2020
 C5142T G11083T C14805T T17247C G26144T

EPI_ISL_425300
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74508/2020
 C241T C1684T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G G23501T C23731T GGG28881AAC

EPI_ISL_425304
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74544/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425305
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74553/2020
 C241T C3037T C14408T C23086T A23403G A27237G GGG28881AAC

EPI_ISL_425308
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74580/2020
 C1314T G11083T C14805T T17247C G26144T

EPI_ISL_425313
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-745DB/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425319
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74650/2020
 ATG1605- C10074T C14352T G23009A C28399T

EPI_ISL_425335
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-748E1/2020
 C241T C3037T C6627T C14408T A23403G GGG28881AAC

EPI_ISL_425338
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7491B/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425966
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB297/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425968
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB314/2020
 G614T C988T G11083T C14805T T17247C G26144T C26735T C29585T

EPI_ISL_425969
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB318/2020
 C241T C3037T C6573T C14408T A23403G C25528T G25720T GGG28881AAC

EPI_ISL_425971
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB325/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_425972
 2020-03-28 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB326/2020
 C8782T C17470T C26088T T28144C

EPI_ISL_426066 MT345875
 2020-03-28 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4375/2020
 ATTAAAGGTTTA1- C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T -29904AAAAAAA

EPI_ISL_426067 MT345876
 2020-03-28 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AGTGTAC29756- AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426069 MT345879
 2020-03-28 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4396/2020
 ATTAAAGGTTTATAC1- C241T T833C C1059T C3037T G5273A C14408T A23403G G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426070 MT345880
 2020-03-28 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A16387T C16859T C19011T A23403G T24749C G25563T G29864A TG29867AA C29870H -29904AAAAAAAAAAAAAAA

EPI_ISL_426299
 2020-03-28 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-32851-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A18015G A23403G G25563T C26625T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426305
 2020-03-28 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-31930-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G C23585A G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426309
 2020-03-28 2020-04-15
 United States hCoV-19/USA/NY-Wadsworth-32104-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_426459 MT350241
 2020-03-28 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0051/2020
 ATTA1- C6027T A10236G G11083T C14805T T17247C T23599C G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_426460 MT350242
 2020-03-28 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_426877 MT451439
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC636/2020
 C8782T A17858G C18060T A24694T T28144C

EPI_ISL_426886 MT517423
 2020-03-28 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_9/2020
 ATTAAAGGTT1- C241T C3037T G3955T C4940T C14408T A23403G G25534T C27005T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_426896 MT517433
 2020-03-28 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_22/2020
 ATTAAAG1- G160A C241T C3037T C6026T T7438C C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_426927 MT451430
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC623/2020
 C8782T C19118T C26088T T28144C

EPI_ISL_426940 MT451446
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC644/2020
 C241T C1059T C1392T C3037T G3251T C14408T G22093T A23403G G25563T C26625T

EPI_ISL_426941 MT451447
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC645/2020
 C1076T G1397A G11083T C27964T T28688C G29742T

EPI_ISL_426943 MT451449
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC647/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_426948 MT451452
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC652/2020
 C241T C3037T C14408T A23403G

EPI_ISL_426951 MT451455
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC655/2020
 C241T C1059T A2018G C3037T C5622T C14408T T21995C A23403G G25563T

EPI_ISL_426952 MT451456
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC656/2020
 C4540T C8782T T9477A C14805T G17632A G25979T T28144C C28311T C28657T C28863T

EPI_ISL_426980 MT451481
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC685/2020
 A2480G C2558T C8078T C8917T G10631A C10889T G11083T C14805T G16795T G26144T

EPI_ISL_426986 MT451485
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC694/2020
 C241T C3037T C5039A C5849T C14408T G15760A A20268G T22378Y A23403G

EPI_ISL_426989 MT451488
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC697/2020
 A2480G C2558T C8078T C8917T G10631A C10889T G11083T C14805T G16795T G26144T

EPI_ISL_427082 MT451570
 2020-03-28 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC808/2020
 C3096T G11083T C12546T C12781T G13627T C14805T C15540T C16375T G17944T G26144T A28338G

EPI_ISL_427229 MT358735
 2020-03-28 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3989/2020
 ATTAAAGGTTTATA1- CCCAGG19- CAAACCAACCAA28T C241T C3037T C14408T C18877T A23403G G25563T G27604A G29864A

EPI_ISL_427232 MT358737
 2020-03-28 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C36Y C241T C1059T C3037T C10582T C14408T C15752T A23403G G25563T A29292G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_427233 MT358738
 2020-03-28 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_427235 MT358740
 2020-03-28 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4035/2020
 ATTAAAG1- GT8AC AT12TA C15T C241T C1059T C3037T C6040T C14408T A23403G G25563T A29903-

EPI_ISL_428331
 2020-03-28 2020-04-20
 United States hCoV-19/USA/WI-UW-235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A G922A C3177T C8782T T18736C A22003G C24034T T26729C G28077C T28144C A29282T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428338
 2020-03-28 2020-04-20
 United States hCoV-19/USA/WI-UW-242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428339
 2020-03-28 2020-04-20
 United States hCoV-19/USA/WI-UW-243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428340
 2020-03-28 2020-04-20
 United States hCoV-19/USA/WI-UW-244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428341
 2020-03-28 2020-04-20
 United States hCoV-19/USA/WI-UW-245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C9113T T18736C C21648T C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428343
 2020-03-28 2020-04-20
 United States hCoV-19/USA/WI-UW-247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A532G C29119T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428344
 2020-03-28 2020-04-20
 United States hCoV-19/USA/WI-UW-248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428924
 2020-03-28 2020-04-22
 Russia hCoV-19/Russia/Chelyabinsk-85311/2020
 C241T C1059T C3037T C14408T G18844A G22344T A23403G G25563T C29200T

EPI_ISL_428925
 2020-03-28 2020-04-22
 Poland hCoV-19/Poland/PL_P2/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C8481T C14408T T18927C A23403G G23782T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_428926
 2020-03-28 2020-04-22
 Poland hCoV-19/Poland/PL_P3/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T T18927C A23403G G23782T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_428927
 2020-03-28 2020-04-22
 Poland hCoV-19/Poland/PL_P4/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A544G C3037T T7767C C14408T A23403G AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_428931
 2020-03-28 2020-04-22
 Poland hCoV-19/Poland/PL_P8/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T C23185T A23403G C25350T C27434T C28826T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_428932
 2020-03-28 2020-04-22
 Poland hCoV-19/Poland/PL_P9/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C23185T A23403G C25350T C27434T C28826T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_428990 MT385414
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0104/2020
 C241T C1059T G2764T C3037T C14408T A23403G G25563T

EPI_ISL_428991 MT385415
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB071/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26625T

EPI_ISL_428996 MT385420
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB077/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26456T

EPI_ISL_428998 MT385422
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB084/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_428999 MT385423
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB069/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429000 MT385424
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0103/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_429002 MT385426
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB098/2020
 AT1- C241T C1059T G2764T C3037T C14408T A23403G G25563T

EPI_ISL_429004 MT385428
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB085/2020
 A1- C241T C3037T C8318A C9724Y C14408T A20268G A23403G C26111T C28854T

EPI_ISL_429005 MT385429
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB079/2020
 ATTA1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_429006 MT385430
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB095/2020
 AT1- G25775T

EPI_ISL_429008 MT385432
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB091/2020
 ATT1- C8782T C17747T A17858G C18060T C19952T G24095T T28144C

EPI_ISL_429010 MT385434
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0108/2020
 C8782T C10681Y G16377T C17747T A17858G C18060T G25770T T28144C

EPI_ISL_429013 MT385437
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB080/2020
 ATTAAAGGTT1- C241T G319A C1059T C3037T G11375A C12664T C14408T C19017T C21114T A23403G G25563T

EPI_ISL_429015 MT385439
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0100/2020
 A1- C241T C1059T C3037T G8102T C14408T C14877T A23403G G25563T GAACAATGCTA29766-

EPI_ISL_429019 MT385443
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB078/2020
 AT1- C6723T C8782T C14925T C17747T A17858G C18060T T28144C

EPI_ISL_429029 MT385453
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB067/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A20268G A23403G

EPI_ISL_429030 MT385454
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB072/2020
 C241T C1059T C3037T AACAGAGAA3933- C14408T A23403G G25563T

EPI_ISL_429032 MT385456
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB082/2020
 ATTAA1- C8782T C17747T A17858G C18060T G20002T T28144C

EPI_ISL_429033 MT385457
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB086/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429036 MT385460
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0107/2020
 C8092T

EPI_ISL_429041 MT385465
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB096/2020
 ATTAA1- C7083T C8782T G16897T C17747T A17858G C18060T T23672Y T28144C

EPI_ISL_429049 MT385473
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB090/2020
 ATTAAAGGTTTATAC1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_429050 MT385474
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB089/2020
 ATTAAAGGTTTA1- A187G C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429175
 2020-03-28 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0039/2020
 A1- G1397A G11083T G14653A C15240T A20284G C28311G T28688C G29737T G29742T

EPI_ISL_429179
 2020-03-28 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0043/2020
 ATTAAAGG1- C241T C3037T C8950T C14408T A20268G A23403G

EPI_ISL_429182
 2020-03-28 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0046/2020
 AT1- C241T C1059T C3037T C14408T G18922R A23403G G25563T

EPI_ISL_429184
 2020-03-28 2020-04-23
 Thailand hCoV-19/Thailand/Bangkok-0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C1380T C3037T G3433T C14408T C14913Y A23403G G25563T

EPI_ISL_429236
 2020-03-28 2020-04-23
 Italy hCoV-19/Italy/TE7859/2020
 C48A C241T A538W C3037T G4510T C14408T A23403G G26713T GGG28881AAC AAA29901-

EPI_ISL_429589
 2020-03-28 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI592/2020
 C241T C1059T C3037T T8788C C14408T G19656T A23403G G25563T G26951A

EPI_ISL_429590
 2020-03-28 2020-04-23
 Denmark hCoV-19/Denmark/ALAB-SSI595/2020
 C241T C829T C1059T C3037T C13620T C14408T G15327A A23403G C23635G G25563T C29200T

EPI_ISL_429617 MT375446
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4734/2020
 ATTAAAGGT1- C36T C241T C1059T C3037T C14408T C16869T A23403G G25563T G29553A AA29902-

EPI_ISL_429623 MT375452
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C36T G2840A C8782T C17747T A17858G C18060T A26045G T28144C AAAA29900-

EPI_ISL_429626 MT375455
 2020-03-28 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4775/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T A10579G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_429770
 2020-03-28 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS4530810/2020
 C241T C3037T C4084T C14408T C15324T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_429970 MT415895
 2020-03-28 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_429972 MT415897
 2020-03-28 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0072/2020
 ATTA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872C

EPI_ISL_429973 MT415898
 2020-03-28 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0073/2020
 ATT1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_429998 MT811550
 2020-03-28 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0039-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1263T C8782T G25061A C26088T T28144C G28975T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430465
 2020-03-28 2020-04-27
 India hCoV-19/India/S5/2020
 ATTAAAGGTTTAT1- C241T C3037T C8917T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_430791
 2020-03-28 2020-04-27
 United States hCoV-19/USA/CA-CZB088/2020
 ATTA1- C799T AAAATT6518- T23590C TT26159- G28178T G29711T

EPI_ISL_430798
 2020-03-28 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_430952 MT412309
 2020-03-28 2020-04-28
 United States SARS-CoV-2/human/USA/ID-UW-4418/2020
 ATT1- C36T C241T T833C C1059T C3037T C10440T A11425G C14408T A23403G G25563T C27964T

EPI_ISL_432458
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C8C2E/2020
 C241T C3037T C14408T G22427A A23403G G27441T GGG28881AAC

EPI_ISL_432549
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CD89E/2020
 C241T C3037T G10097A C14408T A23403G G28580T GGG28881AAC

EPI_ISL_432588
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CF340/2020
 A2480G C2558T G11083T C14805T G26144T C29144T A29391G

EPI_ISL_432620
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/SHEF-D0D99/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432916
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10ED28/2020
 C241T C313T G2424A C3037T C14408T A23403G C26607T GGG28881AAC

EPI_ISL_432921
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10ED73/2020
 C241T C313T G1820A C3037T C6541T C14408T A23403G GGG28881AAC

EPI_ISL_432925
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10EDCE/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_432930
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10EE16/2020
 C241T C3037T C14408T A23403G C25521T

EPI_ISL_432935
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10EE8F/2020
 C241T C3037T C8964T G10521A C14408T A23403G G25429T C28045T

EPI_ISL_432938
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10EEBC/2020
 C241T C3037T G10521A C14408T A23403G G25429T C28045T

EPI_ISL_433198
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB328/2020
 

EPI_ISL_433360
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G12647A C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433362
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T5551C C7423T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433367
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR968/2020
 C8782T C17470T C26088T T28144C

EPI_ISL_433501
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1053/2020
 ATG1605- A12571G C12710T C28854T

EPI_ISL_433502
 2020-03-28 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_434067 MT632898
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S307/2020
 G6419A C8782T C8832T C17747T A17858G C18060T C21648T T28144C

EPI_ISL_434130 MT632917
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S370/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_434133 MT632883
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S373/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434145 MT632846
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S385/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434149 MT632839
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S389/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434153 MT632934
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S393/2020
 C8782T G13624T C17747T A17858G C18060T T28144C

EPI_ISL_434159 MT633025
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S399/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434160 MT632999
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S400/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434161 MT633019
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S401/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434162 MT633009
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S402/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434167 MT633031
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S407/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434169 MT632972
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S409/2020
 G1401A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434171 MT632978
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S411/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434175 MT633041
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S415/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434177 MT632970
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S417/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434179 MT632875
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S419/2020
 C8782T C17747T A17858G C18060T T21745C C24381T T28144C

EPI_ISL_434180 MT633024
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S420/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434183 MT633003
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S423/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434184 MT632997
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S424/2020
 C8782T C10635T C17747T A17858G C18060T T28144C

EPI_ISL_434185 MT632948
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S425/2020
 C8782T C17747T A17858G C18060T T28144C A29865G

EPI_ISL_434186 MT632922
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S426/2020
 C225T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434187 MT632963
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S427/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434188 MT632928
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S428/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434191 MT632967
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S431/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_434192 MT632995
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S432/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434193 MT632939
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S433/2020
 C8782T T10830C C17747T A17858G C18060T T28144C

EPI_ISL_434194 MT632945
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S434/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_434337 MT632954
 2020-03-28 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S577/2020
 A4034G C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434351
 2020-03-28 2020-04-29
 Belgium hCoV-19/Belgium/UGent-33/2020
 C241T C3037T C4893T C14408T A23403G G25563T G29742T

EPI_ISL_434373
 2020-03-28 2020-04-29
 Belgium hCoV-19/Belgium/ITM_C147/2020
 C241T C1059T C3037T C10202T C14408T A23403G G25563T

EPI_ISL_434457
 2020-03-28 2020-04-29
 Greece hCoV-19/Greece/36/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A22124G A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434558
 2020-03-28 2020-04-30
 Philippines hCoV-19/Philippines/PGC06/2020
 A1- C6312A G11083T C13730T C23929T C25613T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_434922
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH299/2020
 C241T C1059T C3037T C14220T C14408T A23403G G25563T G29402C

EPI_ISL_434923
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH300/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_434924
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH301/2020
 T490A C2037T C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G27952T G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434926
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH305/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434928
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH312/2020
 C241T C1059T C3037T C10319T C14408T C21575T A23403G G25563T C27964T

EPI_ISL_434931
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH315/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434934
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH322/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434936
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH324/2020
 C241T C1059T C3037T C14408T A18082G A23403G G25563T C27964T

EPI_ISL_434938
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH326/2020
 C241T C1059T C3037T C14408T G17808T A23403G G25563T C27964T

EPI_ISL_434939
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH327/2020
 C241T C676T C3037T C10015T C14408T C21614T A23403G T25430C GGG28881AAC

EPI_ISL_434940
 2020-03-28 2020-05-01
 United States hCoV-19/USA/TX-HMH328/2020
 C241T C1059T C3037T G10096A C14408T A23403G G25563T G26196T C27964T

EPI_ISL_435074
 2020-03-28 2020-05-02
 India hCoV-19/India/NCDC-02250/2020
 ATTAAAGGTTTATAC1- A6081R C6312A G11083T C13730T C23929T C28311T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_435081
 2020-03-28 2020-05-02
 India hCoV-19/India/NCDC-02248/2020
 C6312A T8022K G11083T C13730T C23929Y C28311T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_435091
 2020-03-28 2020-05-02
 India hCoV-19/India/NCDC-02245/2020
 T76W T78K C1707T C6310A C6312A T8022K T8598Y G11083T C13730T C19524T C23929T C28311T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_435092
 2020-03-28 2020-05-02
 India hCoV-19/India/NCDC-02244/2020
 C6312A T6552K G11083T C13730T T18690K A22351W T22515Y C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435097
 2020-03-28 2020-05-02
 India hCoV-19/India/NCDC-02252/2020
 C6312A G11083T T13408K C13730T C23929T G28089R C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435098
 2020-03-28 2020-05-02
 India hCoV-19/India/NCDC-02240/2020
 C4582Y A6081R C6312A T8022K C9039M G11083T C13730T G18148K C23929T AG24389MS C27847Y C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435112
 2020-03-28 2020-05-02
 India hCoV-19/India/NCDC-02251/2020
 C6310M C6312A T8022K G11083T C13730T C19524Y C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435429
 2020-03-28 2020-05-04
 Hungary hCoV-19/Hungary/SRC-03597w/2020
 C241T C3037T C14408T C14937T C15324T T18495C A23403G

EPI_ISL_435446
 2020-03-28 2020-05-05
 United States hCoV-19/USA/LA-SR0141/2020
 C241T C1059T C3037T G13082T C14408T A23403G G25563T C27964T

EPI_ISL_435450
 2020-03-28 2020-05-05
 United States hCoV-19/USA/LA-SR0146/2020
 C241T C1059T C3037T C10188T G11083T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_435464
 2020-03-28 2020-05-05
 United States hCoV-19/USA/LA-SR0161/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_435466
 2020-03-28 2020-05-05
 United States hCoV-19/USA/LA-SR0163/2020
 C241T C1059T C3037T T6394C C10319T C14408T C16859T A23403G G25563T C27964T

EPI_ISL_436043
 2020-03-28 2020-05-05
 United States hCoV-19/USA/DC-CDC-1738/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T G26690T C28821A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436307
 2020-03-28 2020-05-06
 Spain hCoV-19/Spain/Valencia212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T A12986G C26088T C27970Y T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436311
 2020-03-28 2020-05-06
 Spain hCoV-19/Spain/Valencia216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T A12986G C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_436973
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-570/2020
 C241T C1059T C3037T T9931C C14408T A23403G G25563T

EPI_ISL_436984
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-590/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T C26922T

EPI_ISL_436985
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-596/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_436987
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-600/2020
 C241T C1059T C3037T C9246T C14408T A23403G G25563T

EPI_ISL_437019
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-648/2020
 C241T C3037T C14408T A23403G G25088T

EPI_ISL_437020
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-649/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437021
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-650/2020
 C241T C1059T C1302T C3037T T6096C C9979T C14408T C21952T A23403G G25563T G29779T

EPI_ISL_437023
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-652/2020
 C241T C1059T C3037T C6539T C14408T A23403G G25563T

EPI_ISL_437024
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-653/2020
 C241T C1059T C1302T C3037T C14408T G15380T A23403G G25563T

EPI_ISL_437026
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-659/2020
 C241T C1059T C3037T C6539T C7390T C14408T A23403G G25563T

EPI_ISL_437028
 2020-03-28 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-661/2020
 C241T G806A C1059T C1302T C2523T C3037T C9474T C11758T C14408T C17010T A23403G G25563T

EPI_ISL_437269
 2020-03-28 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0073/2020
 C241T C3037T C14408T G19825T A23403G GGG28881AAC

EPI_ISL_437398 MT450884
 2020-03-28 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0182/2020
 ATTAAAGGTTT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_437515
 2020-03-28 2020-05-11
 United States hCoV-19/USA/AK-PHL070/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25523T G25563T T27869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437587
 2020-03-28 2020-05-11
 United States hCoV-19/USA/CA-SR0195/2020
 C10450T G11083T C14805T T17247C G26144T C28399T C29870A

EPI_ISL_437592
 2020-03-28 2020-05-11
 United States hCoV-19/USA/CA-SR0188/2020
 C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_437672
 2020-03-28 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-800/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_437674
 2020-03-28 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-817/2020
 C241T C3037T C7819T C7834T C14408T C16887T A23403G

EPI_ISL_437676
 2020-03-28 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-825/2020
 C241T C619T C1059T C1302T C3037T C11074T C14408T A23403G G25563T C29095T

EPI_ISL_437677
 2020-03-28 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-834/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29200T

EPI_ISL_437678
 2020-03-28 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-845/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_437805 MT461605
 2020-03-28 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4014/2020
 ATTA1BGGG A12T TCCC18GGGA C5170T C8782T C16468T C17004T T17673C C17747T A17858G C18060T T28144C

EPI_ISL_437806 MT461606
 2020-03-28 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4015/2020
 ATTAAAGGTTTATACCTTC1- CC20GA C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C -29904AAAAAAAAAAAAAA

EPI_ISL_437812 MT461612
 2020-03-28 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4046/2020
 ATTAAAG1- TA11GT TCCC18GGGA C8782T C13511T G17686T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_437898 MT459904
 2020-03-28 2020-05-11
 Greece SARS-CoV-2/human/GRC/41_36861/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10870T C14408T C14786T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438480
 2020-03-28 2020-05-12
 United Kingdom hCoV-19/England/CAMB-75FDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_439545
 2020-03-28 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7225E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439550
 2020-03-28 2020-05-12
 United Kingdom hCoV-19/England/CAMB-71EB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3340T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439557
 2020-03-28 2020-05-12
 United Kingdom hCoV-19/England/CAMB-722C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T T4138C A4547G G10097A C13536T C14408T A23403G C23731T T25202K GGG28881AAC G28908T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439918
 2020-03-28 2020-05-12
 United Kingdom hCoV-19/England/CAMB-720CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11455T C14408T A23403G T25202K GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439930
 2020-03-28 2020-05-12
 United Kingdom hCoV-19/England/CAMB-72151/2020
 ATTAAAGG1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_443277
 2020-03-28 2020-05-12
 France hCoV-19/France/B5413/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T G28378T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_443996
 2020-03-28 2020-05-12
 United Kingdom hCoV-19/England/BRIS-1253ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2706T T3466C A7025G C9724T -11075TTT G11083T C14805T G26144T C27684T C28486Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_444869
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-711/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T C29119T

EPI_ISL_444873
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-719/2020
 C241T C1059T C3037T C3743T C14408T C21855T C22642T A23403G G25563T

EPI_ISL_444874
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-723/2020
 C241T C335T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444875
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-724/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444879
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-728/2020
 C241T C3037T C14408T A23403G C28139A

EPI_ISL_444880
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-731/2020
 C241T C1059T C1191T C3037T C14408T G22037A A23403G G25563T

EPI_ISL_444885
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-743/2020
 C241T C1059T C1302T C3037T A10323G C14408T A23403G G25563T C29696T

EPI_ISL_444908
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-793/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444909
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-794/2020
 ATG1605- C28253A

EPI_ISL_444916
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-805/2020
 C241T C1059T C3037T T11233A C14408T C15842A A23403G G25563T G27604T

EPI_ISL_444917
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-806/2020
 C241T C3037T C7819T C7834T C14408T C16887T A23403G

EPI_ISL_444924
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-826/2020
 C241T C619T C1059T C1302T C3037T C11074T C14408T A23403G G25563T C29095T

EPI_ISL_444925
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-827/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_444934
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-842/2020
 C241T C3037T C7834T C14408T A23403G C27335T

EPI_ISL_444935
 2020-03-28 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-843/2020
 C241T C3037T C7834T T11149C C14408T A23403G

EPI_ISL_444988
 2020-03-28 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH0851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T G5230T C14408T G17211T A20268G C20762T A23403G

EPI_ISL_444989
 2020-03-28 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH1484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T G6894T C14408T A20268G A23403G

EPI_ISL_445113
 2020-03-28 2020-05-15
 United States hCoV-19/USA/CA-SR0128/2020
 C241T C1059T C1887T C3037T C14408T A17615G A23403G G25563T

EPI_ISL_445114
 2020-03-28 2020-05-15
 United States hCoV-19/USA/CA-SR0130/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_445169 MT474126
 2020-03-28 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1121/2020
 C241T C1059T G1148A C3037T C9857T T10129Y G12613A C14408T G19711A G25563T AAAA29900-

EPI_ISL_445371
 2020-03-28 2020-05-15
 Chile hCoV-19/Chile/Santiago_75/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G A27633G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447283
 2020-03-28 2020-05-17
 Israel hCoV-19/Israel/701002768/2020
 C241T C1059T C3037T C14408T G21123T A23403G C23844T G25563T A27809G AAAAAAAAAAAA29892-

EPI_ISL_447393
 2020-03-28 2020-05-17
 Israel hCoV-19/Israel/2047364/2020
 C241T C1059T C3037T C3622T C14408T A23403G G25563T C27549T AAAAAAAAAAAA29892-

EPI_ISL_447510
 2020-03-28 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T G21867T A23403G C24208T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447511
 2020-03-28 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5413T C14408T A23403G G28541T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447512
 2020-03-28 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C16946Y A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447513
 2020-03-28 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447514
 2020-03-28 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447515
 2020-03-28 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C12525Y C14408T A20268G A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_447740
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C10507T C14408T C18877T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_447741
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C10507T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447742
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C10507T C14408T C18877T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447743
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C10507T C14408T C14616T C18877T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447744
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447745
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T A20268G A23403G T23443C AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_447746
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C14408T A20268G A23403G T23443C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_447747
 2020-03-28 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A20268G A23403G T23443C AA29902-

EPI_ISL_448971
 2020-03-28 2020-05-19
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1420T C3037T C14408T G21123T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_450350
 2020-03-28 2020-05-20
 Norway hCoV-19/Norway/Trondheim-S15/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1415T T1918C C3037T G13921T C14408T C18877T A23403G G24368S G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_450446 MT499172
 2020-03-28 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1197/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450447 MT499173
 2020-03-28 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1198/2020
 C241T C3037T G8174R C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_450448 MT499174
 2020-03-28 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1199/2020
 ATTA1- G3113C G11083T C14805T T17247C G26144T

EPI_ISL_450525
 2020-03-28 2020-05-21
 Poland hCoV-19/Poland/1109201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_450727
 2020-03-28 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C152/2020
 C241T C3037T A6507G C14408T A23403G

EPI_ISL_451100
 2020-03-28 2020-05-23
 Australia hCoV-19/Australia/SAP061/2020
 T2G C241T C2416T C3037T C14408T G17122T A23403G G25563T

EPI_ISL_451101
 2020-03-28 2020-05-23
 Australia hCoV-19/Australia/SAP062/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_451102
 2020-03-28 2020-05-23
 Australia hCoV-19/Australia/SAP063/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T G25879T

EPI_ISL_452079
 2020-03-28 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-238/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_452186
 2020-03-28 2020-05-27
 Italy hCoV-19/Italy/VR_20COV25-80/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452372
 2020-03-28 2020-05-27
 Spain hCoV-19/Spain/COV002057/2020
 C8782T T9477A A12927G C14805T G25979T C26681T T28144C C28657T C28863T

EPI_ISL_452620
 2020-03-28 2020-05-27
 Spain hCoV-19/Spain/COV000955/2020
 C241T C3037T A9023G C14408T A23403G GGG28881AAC

EPI_ISL_452631
 2020-03-28 2020-05-27
 Spain hCoV-19/Spain/COV000941/2020
 C241T C3037T A9023G C14408T A23403G GGG28881AAC C29686Y

EPI_ISL_452633
 2020-03-28 2020-05-27
 Spain hCoV-19/Spain/COV000939/2020
 C241T C3037T A11089G C12669T C14408T A23403G GGG28881AAC

EPI_ISL_453499
 2020-03-28 2020-05-27
 United Kingdom hCoV-19/England/NORT-289243/2020
 C2091T G7393T A10323G G11083T C14805T T17247C G26144T C28377T

EPI_ISL_453868
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453869
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- A2480G C2558T G11083T C14805T C18654T G24095T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453877
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T C9661T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453879
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T T13626C C14408T C14786T C19884T G22093A A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453881
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C955T C958T A1629C C3037T C3140T C14408T C17733T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453884
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C955T C958T C3037T C3140T C14408T C17733T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453885
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C955T C958T C3037T C3140T C14408T C17733T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453889
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453890
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C14805T T24052C G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453891
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T A12040G C14408T C15324T A23403G G28975T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453892
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C823T A2480G C2558T G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453894
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C11962G C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453895
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A2480G C2558T G11083T C11962G C14805T G26144T AGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29735-

EPI_ISL_453896
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- A2480G C2558T G11083T C11962G C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453901
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25642T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453915
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T A8031G C14408T A20268G A23403G C25658T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454146
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G11083T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454147
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454149
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454150
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454173
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T T7438C C14408T A23403G C29353T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454205
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T C19862T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454314
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7417T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454319
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C7165A G11083T C12823T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454320
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C7165A G11083T C12823T G26144T C28383T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454321
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C7165A G11083T C12823T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454322
 2020-03-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C7165A G11083T C12823T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454363
 2020-03-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL77/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25583T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454367
 2020-03-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL83/2020
 C241T C1059T C3037T A6442T C13176T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454637 MT533234
 2020-03-28 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1279/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_455220
 2020-03-28 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G29734C GTACGATCGAGT29747- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455221
 2020-03-28 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A C20946T G23120T A23403G C25578T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455452
 2020-03-28 2020-05-29
 Poland hCoV-19/Poland/PL_P39/2020
 C4338T T9743C G11083T C22088T G26144T

EPI_ISL_455980
 2020-03-28 2020-06-01
 United States hCoV-19/USA/LA-EVTL137/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455981
 2020-03-28 2020-06-01
 United States hCoV-19/USA/LA-EVTL138/2020
 G94T C241T C1059T C1101T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455982
 2020-03-28 2020-06-01
 United States hCoV-19/USA/LA-EVTL139/2020
 C241T C1059T C3037T C14408T C18647T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455983
 2020-03-28 2020-06-01
 United States hCoV-19/USA/LA-EVTL140/2020
 C241T C1059T C3037T C14408T C20844T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455993
 2020-03-28 2020-06-01
 United States hCoV-19/USA/LA-EVTL150/2020
 C241T C643T C1059T C3037T C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456279
 2020-03-28 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1838/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456280
 2020-03-28 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1839/2020
 C3096T G11083T C12781T G13627T C14805T C15540T G17944T G26144T A28338G

EPI_ISL_456281
 2020-03-28 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1843/2020
 C241T C1059T C3037T C14408T C16260T A22488C A23403G C28821A

EPI_ISL_456283
 2020-03-28 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1847/2020
 C241T G659A C3037T T7438C C14408T A23403G C29353T

EPI_ISL_457151
 2020-03-28 2020-06-02
 United Kingdom hCoV-19/England/EXET-135C85/2020
 C241T C3037T C14408T C19325T A20268G A23403G C23422T

EPI_ISL_457185
 2020-03-28 2020-06-02
 United Kingdom hCoV-19/England/EXET-135F8C/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC C29555T

EPI_ISL_457760 MT646101
 2020-03-28 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00096/2020
 C241T C2416T C3037T C5826T C14408T G17334T A23403G G25563T

EPI_ISL_457810 MT646080
 2020-03-28 2020-06-02
 United States SARS-CoV-2/human/USA/DC-HP00117/2020
 C241T C1059T C1917T C3037T C14408T C23086T A23403G G25563T

EPI_ISL_457997
 2020-03-28 2020-06-02
 Oman hCoV-19/Oman/RESP-20-6560/2020
 A20355G

EPI_ISL_457998
 2020-03-28 2020-06-02
 Oman hCoV-19/Oman/RESP-20-6701/2020
 C241T A2161G C3037T G5830A A6248C T10531C C14408T A20268G T23062C A23403G C25658T C26204G

EPI_ISL_458156
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1862T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458157
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458158
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458159
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5950T C14408T C20389T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458160
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458161
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15277T C15324T G17014T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458162
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1142T C3037T C14408T C15324T A23403G C27434T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458163
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1142T C3037T T4351C C14408T C15324T A23403G C27434T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458164
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T T18231C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458165
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4465T C14408T C15324T A23403G G26529T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458166
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G21624C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458167
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1142T C3037T C14408T C15324T A23403G C27434T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458168
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3510A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458169
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13570T C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458170
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458171
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458172
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C27526T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458173
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C15579T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458174
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G13921A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458175
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8394T C12781T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458176
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458177
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458178
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A G12482A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458179
 2020-03-28 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0328209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C364T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458583
 2020-03-28 2020-06-04
 United Kingdom hCoV-19/England/NORT-289207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T A23403G G25429T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_459879
 2020-03-28 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-023/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C4543T C8782T C17747T A17858G C18060T C25357T T28144C TC29856CT TAGGA29859- TGA29867ATG A29885C A29895C A29900C

EPI_ISL_459880
 2020-03-28 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-024/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C14408T A23403G C25413T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459881
 2020-03-28 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-025/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C14408T A23403G C25413T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459882
 2020-03-28 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-026/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C2416T C3037T C14408T A23403G C25413T G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856C

EPI_ISL_459883
 2020-03-28 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-029/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C27686T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459884
 2020-03-28 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-030/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C9994A C14408T A23403G G25563T G28368A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459964
 2020-03-28 2020-06-05
 Germany hCoV-19/Germany/Cento-70002372/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_460129 MT520204
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00627/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460134 MT520209
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00611/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T A23403G C25916T T27299C GGG28881AAC T29148C C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460137 MT520212
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00628/2020
 ATTAAA1- C241T C3037T C14408T A23403G C25452T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460161 MT520236
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00603/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460163 MT520238
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- G105T C241T C3037T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460205 MT520280
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460276 MT520351
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00583/2020
 ATTAAA1- C241T C2416T C3037T T10216C C14408T C20030T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_460289 MT520364
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00622/2020
 ATTAAA1- C241T C2416T C3037T A11782G C14408T T19026G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460295 MT520370
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00595/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460314 MT520389
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2416T C3037T C12439T C14408T A23403G G25563T G26233T G29779T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460317 MT520392
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00592/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C2061T C2416T C3037T C14408T A23403G G25563T G26233T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460376 MT520451
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00506/2020
 ATTAAAGGTTTATACCTT1- C241T C2416T C3037T C14408T G20718T A23403G G25563T G26233T AAA29901-

EPI_ISL_460382 MT520457
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00600/2020
 ATTAAA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460396 MT520471
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00613/2020
 ATTAAAG1- C241T C2416T C3037T C14408T A23403G G25563T G28086T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_460426 MT520501
 2020-03-28 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00581/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_461013
 2020-03-28 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8179A C14408T A23403G G25563T C25782T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461039
 2020-03-28 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3044T T11638C C14408T G21786T A23403G C27549T GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461161
 2020-03-28 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2251G C3037T C4002T G10097A C13536T C14408T A23403G C23731T T24311C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461163
 2020-03-28 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11663T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461282
 2020-03-28 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T C3241T T13006C C14408T G19684T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462163
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/GQL-0328309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4207T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462164
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/LJ-0328310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23370G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462165
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/FA-0328311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1551T C3037T C9491T A12858G C14408T C15324T C18246T T20004C A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462166
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/CFM-0328312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C9223T C14408T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462167
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/GC-0328313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2370T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462168
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/SG-0328314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462192
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/HJ-0328338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C3096T C11109T C14408T G18756T A23403G C23929T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462195
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/LL-0328341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2699G C3037T T3520A A7981G G11998T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462196
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/AM-0328342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462197
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/NA-0328342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462208
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/GJM-0328354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18877T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462224
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/VAJ-0328370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462242
 2020-03-28 2020-06-08
 Belgium hCoV-19/Belgium/VSPE-0328388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2456T G11083T C14805T T17247C G26144T G27147T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462471
 2020-03-28 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7370/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463976
 2020-03-28 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S284/2020
 ATTAAA1- C241T C3037T C14408T T19311Y A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_463978
 2020-03-28 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T TTTGTATGTAAATAAACATGCATTCCACA19293C AGCTTTTGATAAA19326- A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_463979
 2020-03-28 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S306/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_465854
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20139064704/2020
 A2480G C2558T G11083T C14805T C20051Y G26144T T27638D A29869W

EPI_ISL_465855
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20139066504/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C29108Y G29773T

EPI_ISL_465856
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20139066604/2020
 C241T C2416T C3037T C5688Y C14408T C14786T G20578T A23403G T24283C T25485C G25563T

EPI_ISL_465858
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20139067404/2020
 A1515G C9223T G11083T C14805T T17247C A17799G G26144T

EPI_ISL_465867
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20140002304/2020
 C241T C3037T C14408T C14724Y G18088K A23403G G27281K G27516K GGG28881AAC

EPI_ISL_465870
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20140003204/2020
 C1613Y A2480G C2558T C7043T G11083T C14805T G26144T

EPI_ISL_465871
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20140004104/2020
 C241T C3037T C14408T C14724T G18088K A23403G G27281T G27516T GGG28881AAC

EPI_ISL_465872
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20140004904/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T T27941Y G28975T

EPI_ISL_465873
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20140005404/2020
 C241T C3037T C14408T C14724Y G18088K A23403G G27281K G27516K GGG28881AAC

EPI_ISL_465878
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20140008904/2020
 C1912T A2480G C2558T T9643C C14805T G25593S G26144T

EPI_ISL_465888
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20140068704/2020
 C241T C3037T C14408T C21242Y A22546G A23403G GGG28881AAC

EPI_ISL_465926
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20142018404/2020
 C241T C3037T C14408T C14724Y G18088K A23403G G27281K G27516K GGG28881RRS

EPI_ISL_465993
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20144023004/2020
 C241T T2987C C3037T C3373A C9096T C11195T C14408T A22102G A23403G GGG28881AAC

EPI_ISL_466006
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20144067704/2020
 A2480G C2558T G11083T C14805T G26144T GAT27382SWY

EPI_ISL_466061
 2020-03-28 2020-06-11
 United Kingdom hCoV-19/England/20148035204/2020
 C241T C3037T C9430Y C14408Y C14724Y C16750Y G18088K A23403R G26144K G27281T G27516K GGG28881AAC

EPI_ISL_467432
 2020-03-28 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C16376T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_468409 MT628145
 2020-03-28 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1442/2020
 C241T C379A C1059T C3037T C14408T A23403G G25012A G25563T

EPI_ISL_468410 MT628146
 2020-03-28 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1443/2020
 C241T C313T C3037T A11348G C14408T A23403G GGG28881AAC

EPI_ISL_468523 MT628246
 2020-03-28 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1593/2020
 C241T C1059T C3037T G8131K C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_468524 MT628247
 2020-03-28 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1594/2020
 ATTAAAGGTTT1- C2836Y C4776T A6821R C8782T C13862Y C17104T C17747T A17858G C18060T G28086K T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469281
 2020-03-28 2020-06-18
 United Arab Emirates hCoV-19/United Arab Emirates/L9119/2020
 C241T C3037T A6466G C14408T C21342T A23403G

EPI_ISL_471199
 2020-03-28 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A5011C C14408T T22348C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471221
 2020-03-28 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471261
 2020-03-28 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T A28349G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471966
 2020-03-28 2020-06-23
 United Kingdom hCoV-19/England/EXET-137360/2020
 G11083T C14805T C18086T T25711C G26144T G28842T

EPI_ISL_473782
 2020-03-28 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T C6040T G9479K G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475108
 2020-03-28 2020-06-23
 Sweden hCoV-19/Sweden/20-08546/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475596
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC12/2020
 C241T C1059T C3037T C14408T C21575T A23403G G25563T

EPI_ISL_475607
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC13/2020
 C281T C8782T C10747T A11602T A15293T C17747T A17858G C18060T A19828T C21789T A23167G A27764G T28144C

EPI_ISL_475624
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC15/2020
 C241T ATG518- C3037T TG12725- C14408T C18877T A23403G G25563T TTTTAAAGTTTCCATTTGGAATCTTGA27264-

EPI_ISL_475626
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC17/2020
 C241T C995T C3037T A4850C C14408T C16679T C18877T GAATCTATCAAACTTCTAACTTTAGAGTCCAACCAACA22494- A23403G G25563T

EPI_ISL_475677
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC63/2020
 C241T C3037T C14408T C18877T A23403G C23520T G25563T

EPI_ISL_475678
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC64/2020
 C241T C1059T C3037T C10824T C14408T A23403G G25563T

EPI_ISL_475679
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC65/2020
 C241T C1059T C3037T C12513T C14408T A23403G G25563T

EPI_ISL_475680
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC66/2020
 C241T G443A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475681
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC67/2020
 

EPI_ISL_475682
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC68/2020
 C241T C3037T C14408T A20268G A23403G G23611T C28854T

EPI_ISL_475683
 2020-03-28 2020-06-23
 United States hCoV-19/USA/CA-CSMC69/2020
 C241T C379A C1059T C3037T C11824T C14408T A23403G G25563T

EPI_ISL_475777
 2020-03-28 2020-06-25
 Austria hCoV-19/Austria/CeMM0301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12832A C14408T A21623W A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475819
 2020-03-28 2020-06-25
 Austria hCoV-19/Austria/CeMM0375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C G2144R C5512T G19999T C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475820
 2020-03-28 2020-06-25
 Austria hCoV-19/Austria/CeMM0376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3116G C14408T A23403G G25563T A27675M C28253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475889
 2020-03-28 2020-06-25
 Austria hCoV-19/Austria/CeMM0516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G9077K C9430Y C13458Y C14408T C16985Y G22708K A23403G G25563T C26768Y C27644Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475890
 2020-03-28 2020-06-25
 Austria hCoV-19/Austria/CeMM0517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C16466Y T17247C G22180A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476900 MT827826
 2020-03-28 2020-06-27
 United States SARS-CoV-2/human/USA/WA-UW-4755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATA1- C241T C1059T C3037T C14408T C17676T A23403G C23635T G25563T C26022T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_477673
 2020-03-28 2020-06-29
 United States hCoV-19/USA/CT-UW-2435/2020
 TAAAGGTTTATA3- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C4246T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_477682
 2020-03-28 2020-06-29
 United States hCoV-19/USA/ID-UW-2425/2020
 ATTAAAGGTT1- C36T C241T T833C C1059T G1264T C3037T C14408T A23403G G25563T C27964T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_478608
 2020-03-28 2020-06-30
 United Kingdom hCoV-19/England/NORT-294B95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478614
 2020-03-28 2020-06-30
 United Kingdom hCoV-19/England/NORT-294DCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C6896T C20270T G25249T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479758
 2020-03-28 2020-07-01
 Vietnam hCoV-19/Vietnam/IBT-NIHE-16/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T A23403G GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_479974
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479975
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T C16751A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479976
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479986
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C C19524T G27806T T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479987
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G185T C241T C3037T C14408T A23403G C26735T T27222C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479988
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479989
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480065
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T C12081T G16381A T17877C G27962A T28144C G28878A G29742A TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480179
 2020-03-28 2020-07-01
 Japan hCoV-19/Japan/PG-0521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480556
 2020-03-28 2020-07-02
 Senegal hCoV-19/Senegal/1351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T C23929T C28311T AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_482307
 2020-03-28 2020-07-03
 United States hCoV-19/USA/OR-PROV-023/2020
 C217T A4236G G11083T C14805T T24326A T25655C C25904T G26144T

EPI_ISL_482308
 2020-03-28 2020-07-03
 United States hCoV-19/USA/OR-PROV-024/2020
 C913T G11083T C14805T G26144T G28001T

EPI_ISL_482459
 2020-03-28 2020-07-03
 United States hCoV-19/USA/OR-PROV-224/2020
 G11083T C14805T C23029T C24157T G26144T

EPI_ISL_483111
 2020-03-28 2020-07-07
 Australia hCoV-19/Australia/SAP334/2020
 ATTA1- C241T C2937T C3037T A12544T C14408T A20268G A23403G

EPI_ISL_483299
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0682-SAN/2020
 ATTAAAG1- C241T C1059T C3037T C14408T C16762T A23403G G25563T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29730-

EPI_ISL_483309
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0698-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- A6042G C8782T T9477A C14805T GTA19518- G25979T T28144C C28657T C28863T

EPI_ISL_483310
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0699-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T A8252G G11083T C14408T A23403G G25563T

EPI_ISL_483311
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0700-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1887T C3037T C14408T G21220T A23403G G25563T

EPI_ISL_483312
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0701-SAN/2020
 A1- C241T C1059T C1887T C3037T C14408T A23403G G25563T C28775T

EPI_ISL_483320
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0715-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T G15732T T19143C A20268G A23403G

EPI_ISL_483427
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0943-SAN/2020
 AT1- C241T C1059T C1887T C3037T C14408T A17615G A23403G G25563T

EPI_ISL_483429
 2020-03-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0945-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T A8252G G11083T C14408T A23403G G25563T

EPI_ISL_484117
 2020-03-28 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DE77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484712
 2020-03-28 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9636T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484731
 2020-03-28 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A G922A C3177T C8782T T18736C C24034T T26729C G27361T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485918
 2020-03-28 2020-07-10
 United States hCoV-19/USA/CT-UW-2432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485919
 2020-03-28 2020-07-10
 United States hCoV-19/USA/CT-UW-2441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- A31T A34H C36T C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485946
 2020-03-28 2020-07-10
 United States hCoV-19/USA/ID-UW-2480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T T833C C1059T C3037T C4827T C14408T C19662T A23403G G25563T C27964T G29862A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_486002
 2020-03-28 2020-07-10
 United States hCoV-19/USA/WA-UW-2572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T T6353C C14408T A23403G G25563T G29553A TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_486034
 2020-03-28 2020-07-10
 United States hCoV-19/USA/WA-UW-2778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C8782T C17747T A17858G C18060T T28144C TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_486047
 2020-03-28 2020-07-10
 United States hCoV-19/USA/WA-UW-2909/2020
 ATTAAA1- C1549T C8782T C17747T A17858G C18060T C21614A T28144C C28926T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486049
 2020-03-28 2020-07-10
 United States hCoV-19/USA/WA-UW-2911/2020
 ATTAAAGGTTTAT1- C36T C241T C1059T C3037T C6187T C14408T A15426G C18029T C18348T A23403G G25563T T29410C G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486057
 2020-03-28 2020-07-10
 United States hCoV-19/USA/WA-UW-2940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_487846
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3881G C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487876
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487957
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6543Y C14408T A20268G A23403G G29734C C29738T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488472
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-294C47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488486
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282B21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C6696T C11001T G27703T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488498
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-28273C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T G12331A C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488506
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-28267B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7040R C14408T A21137G A23403G T23542C C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488514
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282ABB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T G11083K C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488517
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282E19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C5007T C8917T C17898T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488549
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282AE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8516A C14408T A20268G G22225T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488550
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-294A2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C346T G1440A G2891A C7926T C13530T T25202K T27404A A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488555
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282AF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1604R C3037T C14408T A20268G C21707T A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488565
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282B4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T C22264T A23403G C23731T T25202K G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488582
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-294E8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C14408T A23403G T25202K G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488591
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-294D80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K G25244K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488596
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-294C29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G C21707Y A23403G T25202K C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488605
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-283294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488614
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1755G C3037T G11083T C14408T C15824T G22661T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488639
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488654
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-28275A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488679
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-2949AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T C4683T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488686
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282C79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4886T G10097A C14408T G22801T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488717
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-294DAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488718
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-2827E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14786T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488724
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282B9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488726
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282AD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T C4683T T11078G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488728
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-2827D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5693T G11083T C14805T C21638Y T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488740
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-282F34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C7423T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488754
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-281F53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G T3313C C9223T G11083T C14805T G16005T T17247C C19374Y A21625G G26144T C27046T T28136C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488892
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G T25057K C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489062
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4151G G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489536
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T T5881C C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489580
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3831A G8368T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489660
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1593T C3037T G3831A C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489703
 2020-03-28 2020-07-14
 United Kingdom hCoV-19/Scotland/GCVR-171740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2919T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490453
 2020-03-28 2020-07-15
 United Kingdom hCoV-19/England/NORT-294913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490461
 2020-03-28 2020-07-15
 United Kingdom hCoV-19/England/NORT-294B1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20398A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490467
 2020-03-28 2020-07-15
 United Kingdom hCoV-19/England/NORT-294B86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491005
 2020-03-28 2020-07-15
 United States hCoV-19/USA/WA-UW-3141/2020
 T2C C241T C1059T C3037T C14408T A23403G TACCCATTGGTGCAGGTATATGCGCTAG23553- G25563T G29553A

EPI_ISL_491006
 2020-03-28 2020-07-15
 United States hCoV-19/USA/WA-UW-3158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_491007
 2020-03-28 2020-07-15
 United States hCoV-19/USA/WA-UW-3167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C11379T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_491011
 2020-03-28 2020-07-15
 United States hCoV-19/USA/WA-UW-3247/2020
 ATTA1- A31T AACC34TTTH C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_492874
 2020-03-28 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G626A A1515G C9223T G11083T G13379A C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493205
 2020-03-28 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-012/2020
 ATTAAAGGTTT1- C241T C3037T C10440T G10634A C14408T C15960T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873G

EPI_ISL_493206
 2020-03-28 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-013/2020
 ATTA1- T490A C3177T C6040T C8782T T11470C G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G ATGA29866GCTG AA29871CT A29874T AAA29876TGG A29881G AAAAA29883GCCCT AAAAAAAAAAAAAA29890TGTG

EPI_ISL_493332
 2020-03-28 2020-07-21
 Italy hCoV-19/Italy/IZSM-32798-45/2020
 ATTAAAGGTTTATAC1- C241T C3037T C3927T C4993T C14408T A20268G C22458T A23403G

EPI_ISL_493333
 2020-03-28 2020-07-21
 Italy hCoV-19/Italy/IZSM-32803-66/2020
 ATTAAAGGTTTATAC1- C241T C3037T C3927T C4993T C14408T A20268G A23403G

EPI_ISL_494596
 2020-03-28 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1428/2020
 ATTAAAGGT1- C241T C1059T C3037T C9891T C14408T C16762T A23403G G25563T

EPI_ISL_494597
 2020-03-28 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C9891T C14408T C16762T A23403G G25563T

EPI_ISL_494604
 2020-03-28 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1441/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_494605
 2020-03-28 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C1887T C3037T C14408T G17347T A23403G G25563T

EPI_ISL_494606
 2020-03-28 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T C16762T A23403G G25563T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29730-

EPI_ISL_494607
 2020-03-28 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1446/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_495658 MT821774
 2020-03-28 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1483/2020
 AT1- C241T C1059T G2198A C3037T C14408T C16260T C22450T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497745
 2020-03-28 2020-07-25
 Colombia hCoV-19/Colombia/87267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500433
 2020-03-28 2020-07-28
 Spain hCoV-19/Spain/COV006002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C12073T C14408T C16308T A20268G A23403G G29734C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_501195
 2020-03-28 2020-07-31
 Malaysia hCoV-19/Malaysia/2735/2020
 ATTAAAGGT1- C6312A T7621C G11083T C13730T C23929T C25549T C28311T C29253T

EPI_ISL_501196
 2020-03-28 2020-07-31
 Malaysia hCoV-19/Malaysia/2811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C2508A C6310A C6312A G11083T C13730T C19524T TACATG21765- C23929T G27261T C28311T

EPI_ISL_501197
 2020-03-28 2020-07-31
 Malaysia hCoV-19/Malaysia/2813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T7621C A7864G G7895A T7912A CT7923TC G7936A G11083T C13730T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501198
 2020-03-28 2020-07-31
 Malaysia hCoV-19/Malaysia/2875/2020
 ATTA1- C6312A G11083T C13730T C19524T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_506982
 2020-03-28 2020-08-02
 South Korea hCoV-19/Korea/KCDC2188/2020
 ATTA1- A2480G C2558T TG9704CT G11083T C14805T C25658T G26144T C27688T

EPI_ISL_506983
 2020-03-28 2020-08-02
 South Korea hCoV-19/Korea/KCDC2189/2020
 ATTA1- C241T C1302T C3037T C14408T C15738T A20268G A23403G

EPI_ISL_506984
 2020-03-28 2020-08-02
 South Korea hCoV-19/Korea/KCDC2190/2020
 ATTA1- T13C C241T C3037T C8299T C10038T C14408T A20268G A23403G G29473A G29734C

EPI_ISL_507075
 2020-03-28 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T A3933C G11083T C14805T G26144T C28887T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507129
 2020-03-28 2020-08-03
 United Kingdom hCoV-19/England/NORT-2A62E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13576T C14408T C21846T A23403G C27503T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507981
 2020-03-28 2020-08-03
 United States hCoV-19/USA/MN-MDH-1394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C14925T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_507982
 2020-03-28 2020-08-03
 United States hCoV-19/USA/MN-MDH-1395/2020
 ATTAAAG1- T2116A G28871A G29711T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_507983
 2020-03-28 2020-08-03
 United States hCoV-19/USA/MN-MDH-1396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T C18267T G21793C A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_509069
 2020-03-28 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0190/2020
 ATTAAAGGTTT1- A4236G C6195T G11083T C14805T T25655C G26144T AAAAAAAAA29895-

EPI_ISL_509760 MT846464
 2020-03-28 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509761 MT846465
 2020-03-28 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0703/2020
 ATTAAA1- C241T C1059T C3037T C12049T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_510898
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C16575A A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510916
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2704T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510940
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G922A C3037T C14408T C21242T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511120
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C4586T T6686C G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511137
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511138
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511156
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C346T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511157
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4073A C14408T A23403G C26002T GGG28881AAC C29459T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511158
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2407A C3037T C14408T A23403G G27882T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511159
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C4276T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511160
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511161
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G370T C1377T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511162
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G370T C1377T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511163
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511164
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511165
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G G25273T G28326T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511166
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C3037T C14408T A23403G G25273T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511167
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511168
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G G21538T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511169
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2724T C3037T T7814C C14408T A20268G A23403G C25418A C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511170
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C2724T C3037T C5974T T7814C C14408T A20268G A23403G C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511172
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C2724T C3037T G3246T T7814C C14408T A20268G A23403G C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511173
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2724T C3037T T7814C C14408T A20268G A23403G C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511175
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2724T C3037T T7814C C14408T A20268G A23403G C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511359
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT1400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T12364A A19719T C26088T T28144C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511370
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT1411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T A11268G C14408T C18060T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511388
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT1429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511423
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT1464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T G20326A A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511449
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT1490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T T4608G C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511469
 2020-03-28 2020-08-07
 Portugal hCoV-19/Portugal/PT1510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511520
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT0971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C560T A2480G C2558T G11083T C14805T T24052C G26144T C29686T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511598
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C2878T C3037T G8371T C14408T C21855T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511611
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511612
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511613
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T G25126A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511615
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T A23403G C26058T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511620
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511621
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511625
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T G24977C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511626
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511628
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511630
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T G19738A A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511631
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511632
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T C6336T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511634
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511635
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G17944T A20268G A23403G G27382T C29640T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511637
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511638
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G2808A C3037T G11083T C14408T A23403G G24077T T28282C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511639
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4162T C14408T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511640
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511647
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G1440A C2143T G2891A A6351G C10198T C10507T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511650
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C9344T C14408T A23403G G23954A G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511674
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C190T C241T C3037T C14408T A23403G GGG28881AAC A29770T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511759
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C21575T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511760
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T2896C C3037T C14408T G22104T A23403G A24862G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511761
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T378C C3037T C4423T G10056A C14408T A17205G A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511764
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3619T C14408T C17746T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511765
 2020-03-28 2020-08-08
 Portugal hCoV-19/Portugal/PT1222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2940T C3037T C14408T A23403G T26232C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512493
 2020-03-28 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16967B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1648T C3037T C14408T A23403G C26204Y

EPI_ISL_513637
 2020-03-28 2020-08-13
 United States hCoV-19/USA/WA-UW-4758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515283
 2020-03-28 2020-08-18
 United States hCoV-19/USA/WA-UW-4618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T A23403G G25563T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515338
 2020-03-28 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0056/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_515339
 2020-03-28 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0057/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_515521
 2020-03-28 2020-08-19
 Brazil hCoV-19/Brazil/SP-120/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C7834Y C14408T A23403G T27299C GGG28881AAC T29148C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_515903
 2020-03-28 2020-08-20
 United States hCoV-19/USA/CA-CDPH010/2020
 ATTA1- C241T C1059T C3037T G8102T C14408T C14877Y A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516335
 2020-03-28 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C2146Y C3037T C14408T A23403G C24715Y G25563T C25976A TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_516969
 2020-03-28 2020-08-24
 India hCoV-19/India/UP-NBRI-N40-TCQ729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1938T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517001
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A72F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_517008
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A736C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_517011
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T

EPI_ISL_517020
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A742D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_517024
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15237Y A23403G GGG28881AAC

EPI_ISL_517025
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C10138T C10931T G11083T C14805T G16975T C17104T G26144T

EPI_ISL_517031
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A750C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G7115T A11782G C14408T A23403G GGG28881AAC

EPI_ISL_517047
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A10323G C14408T A23403G C29870A

EPI_ISL_517055
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A76AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5371G C14408T G19677T A23403G GGG28881AAC

EPI_ISL_517058
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A76DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G8102T C14408T C16393Y A23403G GGG28881AAC C29870A

EPI_ISL_517059
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A76EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_517061
 2020-03-28 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A7706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T C3037T C12138T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_523475
 2020-03-28 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T514C C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524527
 2020-03-28 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-170D8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11794G C14408T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524545
 2020-03-28 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-171BCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524659
 2020-03-28 2020-08-28
 United Kingdom hCoV-19/England/LOND-12616E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524702
 2020-03-28 2020-08-28
 United Kingdom hCoV-19/England/LOND-12616CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A19543C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525571
 2020-03-28 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-62PT/2020
 A1GGTCCCCGA C241T C450A C1415T C3037T G11521T C14408T A23403G

EPI_ISL_526808
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0588/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_526809
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0589/2020
 ATTAA1- C241T C1059T A2380G C3037T C6310T C14408T C14925T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_526811
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0591/2020
 AT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_526812
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0592/2020
 ATTAAAGGTTT1- C241T C1059T A2380G C3037T C14408T C14925T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_526813
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0593/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C10712T C14408T A23403G T25304C G25563T C28890T

EPI_ISL_526815
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0595/2020
 AT1- T490A C3177T C6040T C8357T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G C29870A

EPI_ISL_526816
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1473T C2416T C3037T T5338C C10712T C14408T A23403G G25563T C29870A

EPI_ISL_526817
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0599/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_526820
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_526822
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1918C C3037T C14408T C18877T A23403G G25563T G25906T

EPI_ISL_526823
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2416T C3037T C3140T T5338C C10712T C14408T A23403G G25563T

EPI_ISL_526824
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_526826
 2020-03-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A652T C1059T C3037T C14408T A23403G G25563T C27688T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_530049
 2020-03-28 2020-09-10
 Spain hCoV-19/Spain/MD-LP45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2919T C3037T A3234G C13072T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530274
 2020-03-28 2020-09-11
 Australia hCoV-19/Australia/QLD1014/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T AAA29901-

EPI_ISL_534822
 2020-03-28 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2EB8/2020
 C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC AAAAA29899-

EPI_ISL_534893
 2020-03-28 2020-09-14
 United Kingdom hCoV-19/England/OXON-B38F5/2020
 C241T A2869G C3037T C14408T A23403G GGG28881AAC C29095T AA29886RR AA29891RR AA29896RR

EPI_ISL_534929
 2020-03-28 2020-09-14
 United Kingdom hCoV-19/England/OXON-B40A1/2020
 A12R C241T C3037T C10818T C14408T A23403G G24781T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_536283
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G C25904T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536284
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G C25433T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_536286
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T G19429T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536290
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536291
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241862/2020
 ATTAAAGGTTTA1- C241T C3037T C3373A G10201T C14408T A23403G GGG28881AAC C29520T C29585T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536292
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536293
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18877T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536294
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G C25904T A28578G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536295
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C26313T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536296
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2062T C3037T C14408T G14712T T19839C G19851T A23403G G23621A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536297
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536299
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T1623C C3037T C6730T G14028T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536300
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T5422C C14408T C15324T A23403G C25433T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536301
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00241993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T1623C C3037T C6730T G14028T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_536302
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A13768G C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536303
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T G8371T C14408T A23403G C23635T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536304
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A13768G C14408T A20268G A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536305
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536306
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25217T G25563T C29835T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536308
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536309
 2020-03-28 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_537583
 2020-03-28 2020-09-16
 United States hCoV-19/USA/CA-UCLA-57/2020
 ATTAAAG1- C241T C379A C1059T C3037T C14408T A23403G G25563T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_537590
 2020-03-28 2020-09-16
 United States hCoV-19/USA/CA-UCLA-65/2020
 ATTAAAGGTTTA1- C241T C379A C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_537607
 2020-03-28 2020-09-16
 United States hCoV-19/USA/CA-UCLA-98/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T C19813T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_538328
 2020-03-28 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538329
 2020-03-28 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2797/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A20268G A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538331
 2020-03-28 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538332
 2020-03-28 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11916T C14408T A23403G C24990T G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538460
 2020-03-28 2020-09-17
 Singapore hCoV-19/Singapore/928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538461
 2020-03-28 2020-09-17
 Singapore hCoV-19/Singapore/929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538912
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9B42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7633Y C14408T C18657Y A20268G A23403G C27442Y C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538925
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C2416T C3037T T8335C C14408T A23403G C25508T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538938
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538955
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9CE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538962
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538974
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538993
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A83C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y C2558Y C3037Y G11083K C14408Y C14805Y C18877Y A23403R G24197K G25563K G26144K C26735Y G28851K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539055
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A83A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T9167C G11083T C14805T C17156T G26144T C28409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539169
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8722Y C14408T C17104T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539195
 2020-03-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A84EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541345
 2020-03-28 2020-09-22
 Brazil hCoV-19/Brazil/PR-5622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T T13864C C14408T A16319W C16536S A16638W A17294R A23403G G25563T G29737S CGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29743-

EPI_ISL_548993
 2020-03-28 2020-09-28
 Singapore hCoV-19/Singapore/985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_560386
 2020-03-28 2020-09-29
 Botswana hCoV-19/Botswana/BOT0455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560578
 2020-03-28 2020-09-29
 France hCoV-19/France/CVL8289/2020
 A26- C28T C241T C3037T C14408T C15324T A23403G A29876R A29879R AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_560627
 2020-03-28 2020-09-29
 France hCoV-19/France/GE8789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11124T C14408T C15324T C22432T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565959
 2020-03-28 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C18877T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_568693
 2020-03-28 2020-10-02
 Indonesia hCoV-19/Indonesia/PP-EIJK-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT293185
 2020-03-28 2020-04-03
 United States SARS-CoV-2/human/USACT-UW420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAA1- C8782T C17747T A17858G C18060T T28144C AAAA29900-

MT293188
 2020-03-28 2020-04-03
 United States SARS-CoV-2/human/USACT-UW423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTG1- T5098C C8782T C17747T A17858G C18060T G21255C T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT293192
 2020-03-28 2020-04-03
 United States SARS-CoV-2/human/USACT-UW427/2020
 ATTAAAGGT1- TACCTTCCCAGGTAACAAACCAACC13- C8782T C17747T A17858G C18060T T28144C C29733T A29903-

MT293195
 2020-03-28 2020-04-03
 United States SARS-CoV-2/human/USACT-UW430/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T A29903-

MT380733
 2020-03-28 2020-04-24
 United States SARS-CoV-2/human/USA/DC-CDC-1738/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T G26690T C28821A AAAAAAAAAAAAAAAAAAAAA29883-

MT459838
 2020-03-28 2020-05-11
 Greece SARS-CoV-2/human/GRC/36_36859/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A22124G A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT477847
 2020-03-28 2020-05-14
 United States SARS-CoV-2/human/USA/AK070/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25523T G25563T T27869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

MT706363
 2020-03-28 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A G922A C3177T C8782T T18736C A22003G C24034T T26729C G28077C T28144C A29282T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706370
 2020-03-28 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706371
 2020-03-28 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706372
 2020-03-28 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706373
 2020-03-28 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C9113T T18736C C21648T C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706374
 2020-03-28 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A532G C29119T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706375
 2020-03-28 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810814
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1428-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C9891T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810815
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1430-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C9891T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810822
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1441-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810823
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1443-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T G17347T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810824
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1444-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810825
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1446-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810924
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0188-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810929
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0195-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C10450T G11083T C14805T T17247C G26144T C28399T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811179
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0128-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A17615G A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811180
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0130-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811312
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0682-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811322
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0698-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A6042G C8782T T9477A C14805T GTA19518- G25979T T28144C C28657T C28863T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811323
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0699-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G G11083T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811324
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0700-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T G21220T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811325
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0701-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T C28775T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811333
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0715-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T G15732T T19143C A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811434
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0943-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A17615G A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811436
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0945-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G G11083T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811655
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0141-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G13082T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811660
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0146-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10188T G11083T C14408T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811675
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0161-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811677
 2020-03-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0163-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T6394C C10319T C14408T C16859T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873452
 2020-03-28 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00013/2020
 A1- C241T C2416T C3037T C8281T C14408T A22007T A23403G G25563T G26233T

MW001287
 2020-03-28 2020-09-14
 United States SARS-CoV-2/human/USA/CCLB-TCE/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MW001288
 2020-03-28 2020-09-14
 United States SARS-CoV-2/human/USA/E6-TCE/2020
 C8782T C18060T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

NMDC60013210
 2020-03-28 2020-06-01
 China hCoV-19/Guangzhou/ID085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13711G C14408T G18315- A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013214
 2020-03-28 2020-06-01
 China hCoV-19/Guangzhou/ID078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013225
 2020-03-28 2020-06-01
 China hCoV-19/Guangzhou/ID079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C5654T C14408T G16846T A23403G G25563T C29730T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013251
 2020-03-28 2020-06-01
 China hCoV-19/Guangzhou/ID087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A6944G C11200T T13422A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419651
 2020-03-29 2020-04-03
 United States hCoV-19/USA/WI-GMF-00466/2020
 C241T C1059T C3037T C11224T C14408T C15654T A23403G G25563T

EPI_ISL_420159
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C07BC/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_420200
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C04C4/2020
 C241T C3037T C14408T C22009T A23403G C27046T C27595T GGG28881AAC

EPI_ISL_420202
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C04B5/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_420203
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C045B/2020
 C241T C3037T C14408T A23403G C24912T C25350T

EPI_ISL_420205
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C034F/2020
 C241T C3037T C5284T C13862T C14408T A23403G G28396T C28836T

EPI_ISL_420213
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C04D3/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_420216
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C0312/2020
 C241T C3037T C14408T C20133T A21137G A23403G C28657T

EPI_ISL_420221
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C03E5/2020
 C241T C1059T C3037T C14408T C16260T A23403G G24368T G25563T C27654T

EPI_ISL_420222
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/SHEF-C02F7/2020
 C1457T A2480G C2558T G11083T C14805T G26144T C26340T

EPI_ISL_420692
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/20139047104/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_420697
 2020-03-29 2020-04-06
 United Kingdom hCoV-19/England/20139047804/2020
 C241T C3037T C14408T C19820Y A20268G T22342Y A23403G

EPI_ISL_421174
 2020-03-29 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_1804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11801A C14408T A20268G A23403G G25218T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421175
 2020-03-29 2020-04-07
 Spain hCoV-19/Spain/Madrid_H12_1905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17664C A20268G A23403G C26681T G29473A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_422017
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2711F/2020
 G1589R ATG1605- T4949C G11831A C16887T G18583K G18651A G20893T

EPI_ISL_422024
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26B12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C829T C1059T C3037T C14408T A23403G G25563T G28371T

EPI_ISL_422030
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-270B8/2020
 C241T C3037T C3792T C14408T A23403G T24376C

EPI_ISL_422036
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26A15/2020
 ATTAAAGGTTTATAC1- C241T C1281T C3037T G6352T C14408T A23403G G27561T GGG28881AAC

EPI_ISL_422043
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-269DC/2020
 ATTAAAGGTT1- C241T C3037T C14408T C14741T A17256R A23403G

EPI_ISL_422044
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26E19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422054
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26F9E/2020
 A1- C241T C3037T C14408T A23403G T26512C G27670T

EPI_ISL_422069
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-270A9/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_422075
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26E46/2020
 C241T C3037T C14408T C19170T G19509A G23285T A23403G G23429T GGG28881AAC

EPI_ISL_422079
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26E37/2020
 AT1- C21Y C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422086
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2708B/2020
 C241T C1059T C3037T C14408T C16329T A18639G A23403G C23536T G25563T C25731T C29625T

EPI_ISL_422093
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2707C/2020
 ATTA1- ATG1605- C27219T

EPI_ISL_422103
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26C00/2020
 C241T C3037T C14408T A23403G C28744Y GGG28881AAC

EPI_ISL_422124
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-2715B/2020
 ATTA1- C241T C1059T G1126T C3037T C10376T C14408T G18583T A23403G G24368T G25563T G29773T

EPI_ISL_422140
 2020-03-29 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26F8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G

EPI_ISL_422777 LR877970
 2020-03-29 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T G29440A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422778 LR877969
 2020-03-29 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422784 LR877982
 2020-03-29 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1044T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422785 LR877986
 2020-03-29 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422903 LR877994
 2020-03-29 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T T18630C A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422957 LR877979
 2020-03-29 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A G20758A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422960 LR877990
 2020-03-29 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423352
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20139064904/2020
 C8782T T9477A C14805T G25979T G26227K T28144C C28657T C28863T

EPI_ISL_423354
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20139065404/2020
 C241T C3037T C14408T G20569T A23403G GGG28881AAC

EPI_ISL_423357
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20139068504/2020
 A2480G C2558T G11083T C14805T G26144T C28331T G28380T

EPI_ISL_423359
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20139069104/2020
 C1514T ATG1605- C5497Y T12027C C20270T G28179A A29683T

EPI_ISL_423360
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20139069404/2020
 C241T C3037T C14408T A23403G G25429T G28812K

EPI_ISL_423365
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20139072204/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_423366
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140000304/2020
 G1440A G2891R C4668T

EPI_ISL_423368
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140000604/2020
 C241T C3037T C14408T A23403G T27212Y G27238T

EPI_ISL_423371
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140002204/2020
 A2480G C2558T G11083T C14805T C23127T G26144T

EPI_ISL_423382
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140007004/2020
 C241T C1059T C3037T C14408T A23403G G25563T A28874R

EPI_ISL_423398
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140066004/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423399
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140066204/2020
 C110T C241T G1883R C2416T C3037T C7800Y C14408T C17069A C18557T G20578T C21997Y T22417Y A23403G G25563T

EPI_ISL_423401
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140068904/2020
 C241T C3037T C14408T A23403G C25350Y

EPI_ISL_423412
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140071404/2020
 C241T C3037T C3373A C11195T C14408T G20580K A23403G C27557Y GGG28881AAC

EPI_ISL_423413
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20140071504/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423451
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20142024404/2020
 C241T C3037T G10870K C14408T A14906R A23403G G25429T C25916T

EPI_ISL_423453
 2020-03-29 2020-04-12
 United Kingdom hCoV-19/England/20142026304/2020
 C241T C2416T C3037T C14408T C14786T C16466Y C19955A G20578T A23403G G25563T

EPI_ISL_424347
 2020-03-29 2020-04-13
 United States hCoV-19/USA/AK-PHL077/2020
 ATTAAAGGTTTATAC1- C241T C3037T C6504T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_424555
 2020-03-29 2020-04-13
 Iceland hCoV-19/Iceland/535/2020
 A2480G C2558T C7420T G11083T C14805T G26144T C28887T

EPI_ISL_424556
 2020-03-29 2020-04-13
 Iceland hCoV-19/Iceland/536/2020
 C5142T G11083T T14141C C14805T T17247C G26144T

EPI_ISL_424609
 2020-03-29 2020-04-13
 Iceland hCoV-19/Iceland/589/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_425234
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7377C/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425250
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-738B5/2020
 C241T C3037T C14408T A23403G C24374T GGG28881AAC

EPI_ISL_425253
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-738E2/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425260
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73994/2020
 C241T C3037T C14408T A20268G A23403G C24374T G29734C

EPI_ISL_425312
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-745CC/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425323
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-746AB/2020
 C241T C3037T C14408T G22131A A23403G GGG28881AAC A29403G

EPI_ISL_425324
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-746BA/2020
 T514C ATG1605-

EPI_ISL_425325
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-746D8/2020
 A2480G C2558T G11083T A14185T C14805T G26062T G26144T

EPI_ISL_425326
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74702/2020
 C241T C3037T C14408T C19366T A23403G GGG28881AAC

EPI_ISL_425327
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74711/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_425331
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7475D/2020
 C241T C3037T C14408T C19366T A23403G GGG28881AAC

EPI_ISL_425332
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7476C/2020
 C241T AAGTCATTT686- C3037T T7216C C14408T C16468T A23403G G24488T G25012T GGG28881AAC

EPI_ISL_425333
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7477B/2020
 C241T C3037T C14408T A23403G A26530G G28739T

EPI_ISL_425611
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E8FA/2020
 C241T C3037T A9409G C14408T A23403G C25613T G29440A

EPI_ISL_425614
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10E933/2020
 G1440A G2891A C10507T

EPI_ISL_425630
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EA5E/2020
 A2480G C2558T G11083T C11962T G14580T C14805T C21575T G26144T

EPI_ISL_425631
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EA6D/2020
 C241T C3037T C14408T C15613T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_425633
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EA8B/2020
 A1412G A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_425967
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB300/2020
 C241T C2399T C3037T C14408T C15240T A23403G GGG28881AAC

EPI_ISL_425979
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB355/2020
 C7423T

EPI_ISL_425982
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB363/2020
 C241T C3037T C10798A C13862T C14408T A23403G G28361C C28836T

EPI_ISL_425999
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB401/2020
 

EPI_ISL_426004
 2020-03-29 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB413/2020
 

EPI_ISL_426074 MT345887
 2020-03-29 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4448/2020
 ATTAAAGGTTTATACCTTCCCA1- C36T C241T T400C T833C C1059T C3037T C5934T C14408T C21575T A23403G G25563T C27964T AAAAA29899-

EPI_ISL_426075 MT345888
 2020-03-29 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4461/2020
 ATTAAAGGTTTATACCTTCCC1- A31T C36T C241T C3037T C14408T A20268G A23403G TG29867AA C29870A

EPI_ISL_426076 MT345878
 2020-03-29 2020-04-14
 United States SARS-CoV-2/human/USA/OR-UW-4388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C36T C241T C1059T C3037T C14408T A23403G G25563T TG29867-A C29870A

EPI_ISL_426379
 2020-03-29 2020-04-16
 Slovenia hCoV-19/Slovenia/MB0329/2020
 ATTAAAGGTTTATACCTT1- C6312A G11083T C13730T C19524T C23929T C28311T A29865C T29867C A29869C AAA29872GCG AAAAAAAAAAAA29876GCCGGGCTTCTT AAA29889CCC AAA29893TTT AAAAA29899GTTTG

EPI_ISL_426462 MT350244
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0054/2020
 C241T T1918C C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_426463 MT350245
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0055/2020
 ATTAAA1- A38R C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_426897 MT517434
 2020-03-29 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_23/2020
 ATTAAAGGTTTAT1- G160A C241T C3037T C6026T T7438C C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_426931 MT451433
 2020-03-29 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC627/2020
 C1076T G1397A -11075TTT G11083T C27964T T28688C G29742T

EPI_ISL_426932 MT451434
 2020-03-29 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC628/2020
 C241T C3037T T7438C C14408T A23403G T24152C C29353T

EPI_ISL_426934 MT451441
 2020-03-29 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC638/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_426935 MT451442
 2020-03-29 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC639/2020
 C241T C3037T A9707G C14408T C18877T A23403G G25563T

EPI_ISL_426977 MT451478
 2020-03-29 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC682/2020
 C241T C3037T C14408T A23403G

EPI_ISL_426997
 2020-03-29 2020-04-17
 Australia hCoV-19/Australia/VIC710/2020
 ATG1605- A1904G C8090T C10789T C21575T

EPI_ISL_426999 MT451496
 2020-03-29 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC712/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427172 MT358705
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/ID-UW-4486/2020
 A1G A4D C36T C241T C1059T C3037T C14408T A16947G A23403G G25563T -29904AAAAAAA

EPI_ISL_427224 MT358730
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3983/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T T8883C TT8885AA C14408T T21146A G21151T A23403G G25563T G29553A AAAA29900-

EPI_ISL_427225 MT358731
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCA1- C241T C1059T C2156T C3037T C14408T T21146D A23403G G25563T C28093T -29904AAAANAHAGM

EPI_ISL_427226 MT358732
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_427227 MT358733
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH C241T C1059T C3037T C14408T A23403G G25563T C27625T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_427228 MT358734
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3988/2020
 TTA2AGT C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAAAAAAAAAAAAAAA

EPI_ISL_427230 MT358736
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3990/2020
 A1G T10A T13A C241T C1059T C3037T C14408T T21146A A23403G C24904T G25563T G29553A AA29902-

EPI_ISL_427234 MT358739
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3997/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TH C241T C1059T C3037T T8883C TT8885AA AGG13512TTA C14408T T21146A G21151T A23403G G25563T G29553A

EPI_ISL_427236 MT358741
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4038/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C12880T C14408T T21146A A23403G G25563T G29553A AAAAAAAAAAAAAA29890-

EPI_ISL_427237 MT358742
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4039/2020
 ATTAAAGGTTTATA1- G2840A G5572T C8782T C17747T A17858G C18060T A26045G T28144C A29903-

EPI_ISL_427264 MT358669
 2020-03-29 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4329/2020
 A1- A31T AAC34TTT C241T TAAAGTCAT684- C3037T C6636T C14408T C18877T C21575T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_427310
 2020-03-29 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4382V/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_427311
 2020-03-29 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4384V/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_427312
 2020-03-29 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4386V/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T

EPI_ISL_428257
 2020-03-29 2020-04-20
 United States hCoV-19/USA/WI-UW-161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G6894T C19029T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428258
 2020-03-29 2020-04-20
 United States hCoV-19/USA/WI-UW-162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10626T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428899
 2020-03-29 2020-04-22
 Russia hCoV-19/Russia/Buryatia-86204/2020
 C241T C3037T G4201T C14408T A23403G C26527T

EPI_ISL_428929
 2020-03-29 2020-04-22
 Poland hCoV-19/Poland/PL_P6/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A544G C3037T T7767C C14408T A23403G AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_428930
 2020-03-29 2020-04-22
 Poland hCoV-19/Poland/PL_P7/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_429201
 2020-03-29 2020-04-23
 Switzerland hCoV-19/Switzerland/GE2297/2020
 ATTAAAG1- C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T

EPI_ISL_429601 MT375431
 2020-03-29 2020-04-23
 United States SARS-CoV-2/human/USA/ID-UW-4552/2020
 ATTAAAGGTTTAT1- AACC30CTTT C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_429604
 2020-03-29 2020-04-23
 United States hCoV-19/USA/WA-UW-4568/2020
 ATTAAAGGTTTAT1- T78A C241T C1059T C3037T T8883C TT8885AA C14408T T21146A G21151T TAG22254CCT T22258A TT22260GA A23403G G25563T G29553A

EPI_ISL_429616 MT375445
 2020-03-29 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4732/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TM C241T C1059T C3037T A10579G C14408T A23403G G25563T A29873C A29903-

EPI_ISL_429716
 2020-03-29 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS7032690/2020
 C241T G1524A C3037T A4235G C14408T A23403G T28902C AAAAAAAA29896-

EPI_ISL_429755
 2020-03-29 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS8772889/2020
 C241T G1524A C3037T A4235G C14408T A23403G T28902C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_429782
 2020-03-29 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS3169999/2020
 C241T C3037T C14408T C15324T T19519A A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_429882
 2020-03-29 2020-04-24
 Taiwan hCoV-19/Taiwan/299/2020
 C6312A G11083T C11941T C13730T C23929T G25106C C28311T AAAAAAAAAAAA29892-

EPI_ISL_429974 MT415899
 2020-03-29 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0075/2020
 ATTAAA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_430542 MT451666
 2020-03-29 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC978/2020
 C4540T C8782T T9477A C14805T G23909K G25979T T28144C C28311T C28657T C28863T

EPI_ISL_430948 MT412305
 2020-03-29 2020-04-28
 United States SARS-CoV-2/human/USA/ID-UW-4383/2020
 C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_430949 MT412306
 2020-03-29 2020-04-28
 United States SARS-CoV-2/human/USA/ID-UW-4402/2020
 ATTAAA1- C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_430950 MT412307
 2020-03-29 2020-04-28
 United States SARS-CoV-2/human/USA/OR-UW-4410/2020
 ATTAAA1- A34H C36T C241T C3037T C7945T C10416T C14408T C18877T A23403G G25563T G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_432480
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CA020/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_432548
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CD737/2020
 C241T C3037T C14408T A17892G T19839C A23403G G25552T GGG28881AAC

EPI_ISL_432724
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C151B/2020
 ATG1605- A1904G C8090T C10789T A12796C

EPI_ISL_432753
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C2CF7/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_432786
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C426C/2020
 G11083T C14805T G26144T

EPI_ISL_432837
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C7296/2020
 C241T C3037T T7438C C8660T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_433364
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5230T C14408T A23403G G23948T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433371
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR987/2020
 ATG1605- C12710T C28854T

EPI_ISL_433505
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433507
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T C18929T A23403G C23731T C25797T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433509
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433510
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20283T C21034T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433511
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433515
 2020-03-29 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1133b/2020
 C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T

EPI_ISL_434141 MT632849
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S381/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434170 MT632841
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S410/2020
 G1401A C8782T T13438C T16863C C17747T A17858G C18060T T28144C

EPI_ISL_434176 MT633033
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S416/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434261 MT632811
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S501/2020
 C241T C379A C1059T T2244C C3037T G10753T C14408T C20759T A23403G G25563T

EPI_ISL_434265 MT632833
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S505/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434274 MT633000
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S514/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434278 MT632924
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S518/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_434316 MT632904
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S556/2020
 G1401A C8782T C17747T A17858G C18060T T28144C T28582C

EPI_ISL_434326 MT632822
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S566/2020
 G4790A C8782T C15738T C18060T G18210T T24805C A27095T T28144C G28907T A29824G

EPI_ISL_434336 MT632821
 2020-03-29 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S576/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434360
 2020-03-29 2020-04-29
 Belgium hCoV-19/Belgium/UGent-44/2020
 C241T C3037T C14408T T19839C A23403G C24099T C27981T GGG28881AAC

EPI_ISL_434361
 2020-03-29 2020-04-29
 Belgium hCoV-19/Belgium/UGent-45/2020
 C241T C3037T G4255T C14408T A23403G A26530G

EPI_ISL_434362
 2020-03-29 2020-04-29
 Belgium hCoV-19/Belgium/UGent-46/2020
 C241T C3037T C14408T T19839C A23403G C24099T C27981T GGG28881AAC

EPI_ISL_434459
 2020-03-29 2020-04-29
 Greece hCoV-19/Greece/35/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T C20402T G24926T G26144T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434461
 2020-03-29 2020-04-29
 Greece hCoV-19/Greece/39/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2590G C3037T C14408T C18264T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434946
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH352/2020
 C241T C1059T G1980A C3037T C14408T G16979T A23403G C25350T G25563T C27964T C29741T

EPI_ISL_434947
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH353/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_434948
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH354/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434949
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH355/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434950
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH357/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434951
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH358/2020
 C241T C3037T A10840G C13138T C14408T G15243T A23403G

EPI_ISL_434952
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH359/2020
 C66T C6312A G11083T C13730T C23277T C23929T C28311T

EPI_ISL_434953
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH360/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G G29162T C29451T A29700G

EPI_ISL_434954
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH361/2020
 C241T C3037T C14408T C15960T A23403G GGG28881AAC

EPI_ISL_434959
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH367/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_434974
 2020-03-29 2020-05-01
 United States hCoV-19/USA/TX-HMH387/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435085
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02310/2020
 T76W T78K C1281Y G3243K C6312A T8022K C8543S G11083T C13730T C13862Y C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435086
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02315/2020
 T2785Y C6312A T8022K A8026W G11083T G12929R C13730T C28115T C28311T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_435093
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02312/2020
 A6081R C6310M C6312A G11083T C11779Y G12685K C13730T A18911M C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435094
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02327/2020
 C6310M C6312A C11669Y C13730T C19524Y C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435095
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02328/2020
 C6312A T8022K G11083T C13730T C13862T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435096
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02332/2020
 C6312A G11083T C13730T C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435099
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02320/2020
 C6312A C9039M G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_435100
 2020-03-29 2020-05-02
 India hCoV-19/India/NCDC-02321/2020
 T78K C6312A T8022K G11083T C13730T T18573C C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435430
 2020-03-29 2020-05-04
 Hungary hCoV-19/Hungary/SRC-03670w/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_436042
 2020-03-29 2020-05-05
 United States hCoV-19/USA/DC-CDC-1734/2020
 C241T C1059T C3037T C14408T A23403G C24034T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436341
 2020-03-29 2020-05-06
 Spain hCoV-19/Spain/Valencia246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T A12986G C26088T T28144C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_436969
 2020-03-29 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-559/2020
 C241T C1059T C1302T C3037T C12049T C14408T A23403G G25563T

EPI_ISL_437025
 2020-03-29 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-654/2020
 C241T C1059T C3037T C14408T T21976C A23403G G25563T

EPI_ISL_437027
 2020-03-29 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-660/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437029
 2020-03-29 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-662/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437224
 2020-03-29 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0025/2020
 C241T C3037T C8986T C14408T C17104T A20268G A23403G G29734C

EPI_ISL_437270
 2020-03-29 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0075/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437361
 2020-03-29 2020-05-08
 United States hCoV-19/USA/MN-MDH-284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T A17858G C18060T A24694T T28144C G28812T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437362
 2020-03-29 2020-05-08
 United States hCoV-19/USA/MN-MDH-286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_437469
 2020-03-29 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah25/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C18877T A23403G G25563T C26735T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_437470
 2020-03-29 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah34/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C18877T A23403G G25563T C26735T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437471
 2020-03-29 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah38/2020
 ATTAAAGGTTTAT1- C241T C3037T C6040T C14408T C18877T A23403G G25563T C26735T C27503T

EPI_ISL_437472
 2020-03-29 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah41/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T C26735T A29884C A29889C A29891G A29898T AA29902-

EPI_ISL_437473
 2020-03-29 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T C18877T C20806T A23403G G25563T C26735T

EPI_ISL_437474
 2020-03-29 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T T7292C C14408T C18877T A23403G G25563T C26735T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437482
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah23/2020
 C241T C3037T C14408T C18877T G22592T A23403G G25563T C26735T

EPI_ISL_437483
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah24/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437484
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah27/2020
 C8782T G22468T T28144C G28878A G29742A

EPI_ISL_437485
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah30/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437486
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah31/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T G29742A

EPI_ISL_437487
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah47/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437488
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah48/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437489
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah49/2020
 C84T C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437490
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah50/2020
 C84T C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437491
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah51/2020
 C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437492
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah53/2020
 C241T AAGTCATTT686- C3037T T7292C C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437493
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah54/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437494
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah55/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437495
 2020-03-29 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah57/2020
 C8782T A14109G G14122T C18877T G25563T T28144C G29742A

EPI_ISL_437803 MT461603
 2020-03-29 2020-05-11
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-3982/2020
 ATTAAAG1- TA11GT TC18GG C28T C241T C1059T C3037T C14408T G17808T A23403G G25563T G29553A -29904AAAAAAAAAAAAAAAA

EPI_ISL_437804 MT461604
 2020-03-29 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4009/2020
 ATTAAAG1- TA11GT TCCC18GGGA C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAA

EPI_ISL_437807 MT461607
 2020-03-29 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4021/2020
 A1C TA3GG TA11GT TCC18GGG C241T C1059T C3037T C14408T G16912T A23403G C23551T G25563T G29553A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_437808 MT461608
 2020-03-29 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4024/2020
 ATTAAAGG1- TA11GT C19V C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_437809 MT461609
 2020-03-29 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4026/2020
 A1C TAA3GGH TA11GT TC18GG C28T C8782T C9166T A14882G C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_437810 MT461610
 2020-03-29 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4032/2020
 AT1- TA3GG T10A C8782T C17747T A17858G C18060T T28144C G28514T

EPI_ISL_437811 MT461611
 2020-03-29 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4041/2020
 ATTA1-GGG TA11GT T18G C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437893 MT459896
 2020-03-29 2020-05-11
 Greece SARS-CoV-2/human/GRC/33_36910/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T G20125A G20128A A22739C A23403G C27263T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438311
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/England/CAMB-75ABD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6627T C14408T A23403G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_438319
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/England/CAMB-75AF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16049Y A23403G T25202K G27948T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438355
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/England/CAMB-75D1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A17691R A23403G T25202K G27441K GGG28881AAC T29568C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438749
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438762
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438763
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439575
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7234C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6606T C14408T A20268G A23403G C28854T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_439602
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/England/CAMB-71E4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439923
 2020-03-29 2020-05-12
 United Kingdom hCoV-19/England/CAMB-71EF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1514T ATG1605- C20270T T25202K A29683T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_443278
 2020-03-29 2020-05-12
 France hCoV-19/France/B5415/2020
 C241T C3037T C10377T C14408T A23403G C27923T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_444643
 2020-03-29 2020-05-14
 United States hCoV-19/USA/NY-NYUMC526/2020
 C241T C1059T T1906C A2018G C3037T C7279T C12084T C14408T T21995C A23403G G25563T

EPI_ISL_444644
 2020-03-29 2020-05-14
 United States hCoV-19/USA/NY-NYUMC527/2020
 C241T C1059T C3037T C12809T C14408T A23403G G25563T

EPI_ISL_444645
 2020-03-29 2020-05-14
 United States hCoV-19/USA/NY-NYUMC528/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444646
 2020-03-29 2020-05-14
 United States hCoV-19/USA/NY-NYUMC529/2020
 C241T C1059T C3037T C6941T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444647
 2020-03-29 2020-05-14
 United States hCoV-19/USA/NY-NYUMC530/2020
 C241T C3037T C4206T G10265A C14408T C21058A A23403G GGG28881AAC

EPI_ISL_444648
 2020-03-29 2020-05-14
 United States hCoV-19/USA/NY-NYUMC531/2020
 C241T C1059T C3037T C11916T C14408T C14925T C18998T A23403G G25563T G29540A

EPI_ISL_444651
 2020-03-29 2020-05-14
 United States hCoV-19/USA/NY-NYUMC534/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_444933
 2020-03-29 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-840/2020
 C241T C1059T C1302T C3037T G5036A C14408T C14585T A23403G G25563T

EPI_ISL_444941
 2020-03-29 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-852/2020
 C241T C1059T C3037T C12781T C14408T C15842A G22103C A23403G G25563T

EPI_ISL_444942
 2020-03-29 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-854/2020
 C241T C1059T C3037T T8788C C14408T C18646T A23403G G25563T G26951A

EPI_ISL_444944
 2020-03-29 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-856/2020
 C241T C3037T C5724T C7834T C14408T A23403G

EPI_ISL_444946
 2020-03-29 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-861/2020
 ATG1605- G11083T C20402T C28253A C29284T

EPI_ISL_444947
 2020-03-29 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-862/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444990
 2020-03-29 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH1713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C8782T T9477A C14805T A21694G G25979T T28144C C28657T C28863T

EPI_ISL_445334
 2020-03-29 2020-05-15
 Chile hCoV-19/Chile/Puerto_Montt_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1723Y C3037T G10427R C14408T C21114T A23403G C25350T G28703T A29319R CA29838TG GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_445335
 2020-03-29 2020-05-15
 Chile hCoV-19/Chile/Puerto_Montt_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G45T C241T C3037T A3956M C8389T C14408T T20391Y A23403G G25563T G29737K ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_447282
 2020-03-29 2020-05-17
 Israel hCoV-19/Israel/701002786/2020
 C241T C1059T G2945A C3037T C14408T G21123T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447388
 2020-03-29 2020-05-17
 Israel hCoV-19/Israel/2047604/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447389
 2020-03-29 2020-05-17
 Israel hCoV-19/Israel/2047586/2020
 C241T C884T C1059T C3037T T13006C C14408T G20962A A23403G G25563T C25688T AAAAAAAAAAAA29892-

EPI_ISL_447391
 2020-03-29 2020-05-17
 Israel hCoV-19/Israel/2047418/2020
 T191C C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447449
 2020-03-29 2020-05-17
 Israel hCoV-19/Israel/13075719/2020
 C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447450
 2020-03-29 2020-05-17
 Israel hCoV-19/Israel/13075703/2020
 C241T C313T C3037T G4510A C14408T A23403G G25785T A28877T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447477
 2020-03-29 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5884T C14408T T17126C A20268G A23403G C24466T C28546A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447478
 2020-03-29 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G G21578A A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447481
 2020-03-29 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T A12986G G15100A G25252T C26088T T28144C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447592
 2020-03-29 2020-05-18
 Taiwan hCoV-19/Taiwan/TSGH-33/2020
 T2190A G3122T G4436T C8782T T16553A A17271C C17747T A17858G C18060T T27482C -29904GAATACCCAAATAAAAGCCACTGAAACCGGAAAAACAAAAAATTTAAAAAATATAAAGGAAAAAC

EPI_ISL_447748
 2020-03-29 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C7047T C14408T A23403G A25505C GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_448864
 2020-03-29 2020-05-19
 United Kingdom hCoV-19/England/SHEF-C7B31/2020
 C241T G1914A C3037T C14408T T16456C A23403G

EPI_ISL_448866
 2020-03-29 2020-05-19
 United Kingdom hCoV-19/England/SHEF-C8286/2020
 C241T G1914A C3037T C14408T T16456C A23403G

EPI_ISL_448951
 2020-03-29 2020-05-19
 United Kingdom hCoV-19/Northern Ireland/NIRE-FB220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C4795T C14408T C15251Y C17746Y A23403G G26660A GGG28881AAC

EPI_ISL_450349
 2020-03-29 2020-05-20
 Norway hCoV-19/Norway/Trondheim-S12/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1415T T1918C C3037T G13921T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_450393
 2020-03-29 2020-05-21
 United States hCoV-19/USA/NY-NYUMC676/2020
 C241T C1059T C3037T C4113T G11634T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_450445 MT499171
 2020-03-29 2020-05-21
 United States SARS-CoV-2/human/USA/CA-CZB-1196/2020
 ATTA1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T

EPI_ISL_450526
 2020-03-29 2020-05-21
 Poland hCoV-19/Poland/1109500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3037T C21707T CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_450527
 2020-03-29 2020-05-21
 Poland hCoV-19/Poland/1110551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C7644T C14408T C14931T A23403G G25563T T25938C CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_450728
 2020-03-29 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C161/2020
 C241T C3037T A6507G C14408T A23403G

EPI_ISL_450729
 2020-03-29 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C169/2020
 C241T C3037T C12439A C14408T C15603T A20268G A23403G C28512T

EPI_ISL_450748
 2020-03-29 2020-05-22
 United States hCoV-19/USA/MN-MDH-274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C12253T C17747T A17858G C18060T A24694T T28144C G28812T G28985T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_450749
 2020-03-29 2020-05-22
 United States hCoV-19/USA/MN-MDH-275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C37A C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_450750
 2020-03-29 2020-05-22
 United States hCoV-19/USA/MN-MDH-276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_450751
 2020-03-29 2020-05-22
 United States hCoV-19/USA/MN-MDH-277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C21707T A23403G A26530G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_450752
 2020-03-29 2020-05-22
 United States hCoV-19/USA/MN-MDH-278/2020
 ATT1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_451103
 2020-03-29 2020-05-23
 Australia hCoV-19/Australia/SAP065/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451104
 2020-03-29 2020-05-23
 Australia hCoV-19/Australia/SAP066/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_451105
 2020-03-29 2020-05-23
 Australia hCoV-19/Australia/SAP067/2020
 C241T C2416T C3037T C14408T A23403G G25563T C28887T

EPI_ISL_451982 MT511077
 2020-03-29 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P21/2020
 T10W T13W C19T C106T C241T C3037T A8072G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_451984 MT511079
 2020-03-29 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P23/2020
 C19T C106T C241T C3037T A8072G C14408T A23403G C28005T GGG28881AAC C29870M

EPI_ISL_452586
 2020-03-29 2020-05-27
 Spain hCoV-19/Spain/COV001104/2020
 C241T C3037T C14408T A20268G A23403G C27059T G29734C

EPI_ISL_453906
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C3140T G3719A G10870T C14408T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453911
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C955T C958T C3037T C3140T C14408T C17733T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453912
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C955T C958T C3037T C3140T C14408T C17733T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453913
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C955T C958T C3037T C3140T C14408T C17733T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453916
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_454206
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G G24077T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454297
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6539T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454349
 2020-03-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3045T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454366
 2020-03-29 2020-05-28
 United States hCoV-19/USA/PA-MGEL81/2020
 C8782T C9298T G16206T C17747T A17858G C18060T A24694T T28144C GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455389
 2020-03-29 2020-05-29
 China hCoV-19/Wuhan/HB-WH4-207/2020
 C15714-

EPI_ISL_455412
 2020-03-29 2020-05-29
 Nigeria hCoV-19/Nigeria/OG007-CV22/2020
 ATTAAAGGTTTATACC1- A2480G C2558T G11083T C14805T G26144T G26779T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455422
 2020-03-29 2020-05-29
 Nigeria hCoV-19/Nigeria/OS070-CV11/2020
 ATTAAAGGTTTATACC1- A2550G C8782T T9880C C15857T C20081T G22468T T28144C G28878A G29705T G29742A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455423
 2020-03-29 2020-05-29
 Nigeria hCoV-19/Nigeria/OS075-CV12/2020
 ATTAAAGGTTTATACCTTCCCA1- A2550G C8782T T9880C C15857T C20081T G22468T T28144C G28878A G29705T G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455424
 2020-03-29 2020-05-29
 Nigeria hCoV-19/Nigeria/OS085-CV14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G3371T C8782T T11398C G22468T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455426
 2020-03-29 2020-05-29
 Nigeria hCoV-19/Nigeria/OS122-CV18/2020
 ATTAAA1- A2550G C8782T T9880C C15857T C20081T G22468T T28144C G28878A G29705T G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_455567
 2020-03-29 2020-05-31
 Croatia hCoV-19/Croatia/7R-S8new/2020
 C241T C1059T C3037T C14408T T21009C A23403G G25563T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_455626
 2020-03-29 2020-06-01
 Portugal hCoV-19/Portugal/PT0202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C1190T G11083T C17410T C18687T ACTT25432- C29200T C29274T C29754T G29764A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_455985
 2020-03-29 2020-06-01
 United States hCoV-19/USA/LA-EVTL142/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456278
 2020-03-29 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1837/2020
 C241T C1059T C3037T C14408T C16260T A23403G A29700G

EPI_ISL_456282
 2020-03-29 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1845/2020
 C241T C1059T C3037T C14408T C16247T C16260T A23403G C28821A

EPI_ISL_456966
 2020-03-29 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5091/2020
 C241T C3037T C14408T T15966C A20268G A23403G G29260T G29734C

EPI_ISL_457010
 2020-03-29 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5370/2020
 C241T C3037T C14408T C18877T A23403G G24197T G24348T G25563T C26735T

EPI_ISL_457156
 2020-03-29 2020-06-02
 United Kingdom hCoV-19/England/EXET-135CEF/2020
 C241T C3037T C14408T G14580T A23403G

EPI_ISL_457162
 2020-03-29 2020-06-02
 United Kingdom hCoV-19/England/EXET-135D55/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457167
 2020-03-29 2020-06-02
 United Kingdom hCoV-19/England/EXET-135DCE/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC

EPI_ISL_457783 MT646112
 2020-03-29 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00154/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G T28921C A29700G

EPI_ISL_457811 MT646081
 2020-03-29 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00118/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_457843
 2020-03-29 2020-06-02
 Kenya hCoV-19/Kenya/NIC_569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T20394C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_457996
 2020-03-29 2020-06-02
 Oman hCoV-19/Oman/RESP-20-6417/2020
 C241T C2416T C3037T G8371T G11083T C14408T C22477T A23403G G25563T

EPI_ISL_458187
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G T25476C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458188
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458189
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458190
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13216G C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458191
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T C18486T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458192
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458193
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1471T C3037T C4320T C14408T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458194
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458195
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3692T C14408T C15324T C15960T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458196
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1142T C3037T C11074T C14408T C15324T A23403G C27434T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458197
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4217G C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458198
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18928T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458199
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458200
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C27294T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458201
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C14408T C15324T A23403G G25082A C25703T C29642T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458202
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458203
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458204
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G10098A G11083T C11580T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458205
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G16496A A23403G C27434T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458206
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458207
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458208
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5239T C14408T A23403G G25855T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458209
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T23633C C28139A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458210
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T12112C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458211
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458212
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G17562T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458213
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3728T C9891T G12149T C14408T A23403G G25563T G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458214
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458215
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T A12605G C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458216
 2020-03-29 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0329246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C14980T G18703T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458667
 2020-03-29 2020-06-04
 United Kingdom hCoV-19/England/NORT-28945C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G7393T A10323G G11083T C14805T T17247C C25836T G26144T C28377T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458674
 2020-03-29 2020-06-04
 United Kingdom hCoV-19/England/NORT-28936E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459885
 2020-03-29 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-034/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T G29688T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459890
 2020-03-29 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-039/2020
 ATTAAAGGTTTATACCTTCC1- GT24TA C241T C2416T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_460269 MT520344
 2020-03-29 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T A6818G C14408T A23403G G25563T G27074A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460604
 2020-03-29 2020-06-05
 Russia hCoV-19/Russia/CRIE145922/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A21141G A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460605
 2020-03-29 2020-06-05
 Russia hCoV-19/Russia/CRIE140762/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T T4408C C8668T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_460664
 2020-03-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T T13006C C13384T C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460687
 2020-03-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G C28253T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460694
 2020-03-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T C22050T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461065
 2020-03-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26408T C27804T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461068
 2020-03-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T C29459T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461127
 2020-03-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461268
 2020-03-29 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T C19983T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461432
 2020-03-29 2020-06-06
 United States hCoV-19/USA/WA-UW-4779/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25354T G25563T GG29861AA G29864A TG29867AA C29870A

EPI_ISL_462206
 2020-03-29 2020-06-08
 Belgium hCoV-19/Belgium/VEH-0329352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T23287C A23403G A23870G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462211
 2020-03-29 2020-06-08
 Belgium hCoV-19/Belgium/VHEJ-0329357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C C21646T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462240
 2020-03-29 2020-06-08
 Belgium hCoV-19/Belgium/RMO-0329386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462243
 2020-03-29 2020-06-08
 Belgium hCoV-19/Belgium/LHL-0329389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15024T T19839C A23403G G24199T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462246
 2020-03-29 2020-06-08
 Belgium hCoV-19/Belgium/HAJ-0328392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9724T C11674T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462473
 2020-03-29 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7372/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C15324T A23403G C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462474
 2020-03-29 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7375/2020
 ATTAAAGGTTTAT1- C241T C3037T A8107T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462476
 2020-03-29 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7379/2020
 ATTAAA1- C241T C1059T C3037T T4690C C14408T C20178T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463980
 2020-03-29 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T G4201T C14408T A23403G C26527T G29734A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_463981
 2020-03-29 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G C25509S G25563T C29769T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_463982
 2020-03-29 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S349/2020
 ATTAAA1- C241T C1059T C3037T C14408T C19386T A23403G G25563T G28368A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_463983
 2020-03-29 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T AAGTCATTT686- C1059T C3037T C8092T C14408T TTTGTATGTAAATAAACATGCATTCCACACACCAGCTTTTGATAAAA19293- A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_464141
 2020-03-29 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_30/2020
 C241T C4002T T8022G G10097A C13536T C14408T A23403G C23731T AG24389CC C25169T GGG28881AAC

EPI_ISL_464142
 2020-03-29 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_31/2020
 A1515G C9223T G11083T C14805T T17247C C18568T T20891G T25569A G26144T

EPI_ISL_465859
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20139069604/2020
 C241T C3037T C14408T G21578T A23403G GGG28881AAC

EPI_ISL_465860
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20139069704/2020
 A2480G C2558T G11083T A11090T C14805T C17430T G26144T C26735T

EPI_ISL_465861
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20139069804/2020
 A2480G C2558T A11090T C14805T C17430T G26144T C26735T

EPI_ISL_465865
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140001504/2020
 A2480G C2558T C14220T C14805T C22264T G26144T

EPI_ISL_465866
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140002104/2020
 G1440A G2891A C4668T G25523A C26681T A27545G C28708T

EPI_ISL_465874
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140006304/2020
 C241T C2416T C3037T C14408T C14786T G20578T C21587Y A23403G G25563T

EPI_ISL_465875
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140006904/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_465876
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140007502/2020
 A2480G C2558T T7813Y A10828C G11083T T11488Y C14805T C25096T G26144T

EPI_ISL_465879
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140009904/2020
 A8728G C9636Y G11083T G13627T C14805T C15540T G26144T A28338G C29721T

EPI_ISL_465883
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140063804/2020
 C241T G2468S C3037T C14408T G15768T A23403G GGG28881AAC

EPI_ISL_465890
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20140073104/2020
 C241T C3037T C11653T C14408T A23403G GGG28881AAC A29871G

EPI_ISL_465914
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20142010304/2020
 C241T C2675A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_465920
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20142014704/2020
 C241T C3037T C14408T C18395T A23403G GGG28881AAC

EPI_ISL_465932
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20142022204/2020
 G11083T C14805T T17247C G18498K G26144T G28899K A29871T

EPI_ISL_465935
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20142024504/2020
 C241T C3037T C14408T A23403G G25429T A29880T

EPI_ISL_465937
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20142025404/2020
 C241T C1780Y C3037T A3058W C3369T C4158T T8421K C14408T A23403G C25308Y GGG28881AAC A29873G

EPI_ISL_465939
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20142026704/2020
 C241T C3037T C14408T A23403G C24381Y GGG28881AAC G29734T

EPI_ISL_465987
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20144021704/2020
 C241T G246T C3037T C5173T C14408T G17193K A23403G C23996Y GGG28881AAC

EPI_ISL_465991
 2020-03-29 2020-06-11
 United Kingdom hCoV-19/England/20144022204/2020
 C241T C3037T T7792C C14408T G21724T A23403G C23643Y GGG28881AAC

EPI_ISL_467775
 2020-03-29 2020-06-15
 Russia hCoV-19/Russia/CRIE139642/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GGG28881AAC GAGA29779- C29787T ATATGGAAGAGC29790- C29803T TGTGTAAAATTAATTTTAGTAGTGCTATC29807- C29837A G29841C TTTTAATA29845C T29856G TT29858CG G29861C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_468013
 2020-03-29 2020-06-16
 Australia hCoV-19/Australia/SAP204/2020
 A1- C241T GTT521- C3037T C14408T A23403G GGG28881AAC

EPI_ISL_468496 MT628220
 2020-03-29 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1559/2020
 C241T C1059T C3037T C6187Y C14408T T22939C A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468527 MT628250
 2020-03-29 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1598/2020
 T2Y C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468781
 2020-03-29 2020-06-17
 Spain hCoV-19/Spain/Zaragoza2461/2020
 C241T C3037T A8031G C14408T A20268G A23403G G28188T C29640T

EPI_ISL_471181
 2020-03-29 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T14859A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471264
 2020-03-29 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C20405T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471554
 2020-03-29 2020-06-22
 Brazil hCoV-19/Brazil/SP-551/2020
 T25A C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAA29891-

EPI_ISL_471964
 2020-03-29 2020-06-23
 United Kingdom hCoV-19/England/EXET-137342/2020
 C1288T C6312A G11083T C13730T C23929T C28311T

EPI_ISL_472228
 2020-03-29 2020-06-23
 United Kingdom hCoV-19/England/NORT-282D0D/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475109
 2020-03-29 2020-06-23
 Sweden hCoV-19/Sweden/20-08561/2020
 C241T C1722T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_475110
 2020-03-29 2020-06-23
 Sweden hCoV-19/Sweden/20-50505/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475556
 2020-03-29 2020-06-23
 Sweden hCoV-19/Sweden/20-08639/2020
 C241T C3037T A13766G C14408T TACATG21765- A23403G

EPI_ISL_475778
 2020-03-29 2020-06-25
 Austria hCoV-19/Austria/CeMM0303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323R G10870T C14408T C18452T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475779
 2020-03-29 2020-06-25
 Austria hCoV-19/Austria/CeMM0304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7113T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475780
 2020-03-29 2020-06-25
 Austria hCoV-19/Austria/CeMM0305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24642T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475926
 2020-03-29 2020-06-25
 Austria hCoV-19/Austria/CeMM0579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C14408T A18010G A23403G A24862G G25906T C28629T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475927
 2020-03-29 2020-06-25
 Austria hCoV-19/Austria/CeMM0580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C14408T A18010G A23403G A24862G G25906T C28629T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477621
 2020-03-29 2020-06-29
 Hungary hCoV-19/Hungary/US-2953w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G25483A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477624
 2020-03-29 2020-06-29
 Hungary hCoV-19/Hungary/US-539w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477625
 2020-03-29 2020-06-29
 Hungary hCoV-19/Hungary/US-568w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T C16883T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477674
 2020-03-29 2020-06-29
 United States hCoV-19/USA/CT-UW-2446/2020
 TAAAGGTTTATA3- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T T19378C A23403G G25563T C29666T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_477675
 2020-03-29 2020-06-29
 United States hCoV-19/USA/CT-UW-2447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C36T C241T C1059T C3037T C3253T C14408T A23403G G25563T TG29867AA C29870A

EPI_ISL_477678
 2020-03-29 2020-06-29
 United States hCoV-19/USA/CT-UW-2473/2020
 ATTAAAGGTTTATACCTTCC1- C36T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_477684
 2020-03-29 2020-06-29
 United States hCoV-19/USA/UNKNOWN-UW-2476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_477721
 2020-03-29 2020-06-29
 United States hCoV-19/USA/WA-UW-2595/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T G3231T C8782T A10356G C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_477723
 2020-03-29 2020-06-29
 United States hCoV-19/USA/WA-UW-2601/2020
 ATTAAAGGTTTATACCTTCCCAG1- A31T C36T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_477724
 2020-03-29 2020-06-29
 United States hCoV-19/USA/WA-UW-2603/2020
 ATTAAAGGTTTATACCTTCCCA1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T TG29867AA C29870A

EPI_ISL_478616
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-294DEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478619
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-294E14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478621
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-294E32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T A11298G C14408T A20268G A23403G G26849A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478624
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-294FF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478626
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-29501D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478627
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-29502C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G11083T C14805T T17247C C20759T C25701T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478628
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-29503B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T G28077T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478630
 2020-03-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-295068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479626
 2020-03-29 2020-07-01
 Canada hCoV-19/Canada/NB-204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G25599T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479628
 2020-03-29 2020-07-01
 Canada hCoV-19/Canada/NB-209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479977
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479978
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479995
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T C14599T A23403G G26730A GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480004
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480005
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G C25688T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480006
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480007
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480008
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T C20178T A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480011
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T G377T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480012
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G C25688T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480013
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480041
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C313T C823T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480066
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480088
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T G26713T T28144C C29739T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480089
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- G3179A C6982T C8782T G26713T T28144C C29739T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480119
 2020-03-29 2020-07-01
 Japan hCoV-19/Japan/PG-0458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G26730A GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_481639
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M11S3/2020
 G11083T A13117G C14805T C23707T G26144T C28826T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481640
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M14S1/2020
 C241T C3037T C14408T A23403G G29243A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481641
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M15S3/2020
 C241T C1059T C3037T C4230T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481642
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M17S2/2020
 C241T C3037T C6401T C14408T C23078T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481643
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M18S2/2020
 C241T C1059T C3037T A7152C C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481644
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M36S1/2020
 C241T C3037T C14408T A21993T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481645
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M50S2/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481646
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M60S1/2020
 C241T C3037T G4510T C14408T A23403G C23855T C26534T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481647
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M60S2/2020
 C241T C3037T C14408T A23403G C24382T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481648
 2020-03-29 2020-07-03
 Finland hCoV-19/Finland/29M77S3/2020
 C241T C3037T C6401T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482310
 2020-03-29 2020-07-03
 United States hCoV-19/USA/OR-PROV-026/2020
 C241T C1437T C3037T C14408T A23403G C27630T

EPI_ISL_482311
 2020-03-29 2020-07-03
 United States hCoV-19/USA/OR-PROV-027/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_482312
 2020-03-29 2020-07-03
 United States hCoV-19/USA/OR-PROV-028/2020
 A187G C241T C1616T C3037T C14408T A23403G G28041T

EPI_ISL_483301
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0685-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C11671T C14408T A23403G G25563T

EPI_ISL_483302
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0686-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483303
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0687-SAN/2020
 ATT1- C241T T833C C1059T C3037T C14408T G20275T A23403G G25563T C27964T

EPI_ISL_483307
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0696-SAN/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_483315
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0706-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T

EPI_ISL_483319
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0713-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C335T C1059T C3037T C14408T A23403G G25563T C29245T

EPI_ISL_483426
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0941-SAN/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_483430
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0953-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G9105A C14408T A23403G C25614T

EPI_ISL_483431
 2020-03-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0955-SAN/2020
 ATTAAAGGTT1- C241T C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T

EPI_ISL_483701
 2020-03-29 2020-07-08
 Israel hCoV-19/Israel/n14284/2020
 C241T C3037T T3466- A8651C C10036T A11684T T12803G C14408T A16595- C16733T A19818C TG21001- C22802A A23403G ATT27579- TTTACTCTCCAATTTTTCTTA27680- TTT27785- GGG28881AAC A29865G

EPI_ISL_484125
 2020-03-29 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DF29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T G13627T C14805T C15540T G25302T A25822T G26144T A28338G G29759T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485917
 2020-03-29 2020-07-10
 United States hCoV-19/USA/CT-UW-2427/2020
 ATTAAAGGT1- C36T C241T C1059T C3037T C6026T C14408T A23403G G25563T C28836T -29904AAAAAAAAAAAAA

EPI_ISL_485920
 2020-03-29 2020-07-10
 United States hCoV-19/USA/CT-UW-2462/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485921
 2020-03-29 2020-07-10
 United States hCoV-19/USA/CT-UW-2465/2020
 AT1- A4T C36T C241T C1059T C3037T C3768T C14408T A23403G G25563T C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486003
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2599/2020
 ATTAAAGGTTTATA1- T8623C C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486005
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2608/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486006
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2609/2020
 AT1- A4D A31T C36T C241T C1059T C3037T C6040T C14408T C19560T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486009
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2627/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_486010
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T T833C C1059T C3037T C14408T C14571T A23403G G25563T A27545G C27964T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_486011
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2663/2020
 ATTAAAG1- C36T C241T T833C C1059T C3037T C14408T C14571T A23403G G25563T A27545G C27964T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_486033
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2777/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486035
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876M

EPI_ISL_486040
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C36T C5784T C8782T C17747T A17858G C18060T G26730A T28144C A28402G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_486041
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2872/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C8888T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_486042
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_486043
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2877/2020
 ATTAAAGGTTTATA1- C36T C241T C1059T G1186A C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486044
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAAAAAAAAAA

EPI_ISL_486046
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C8782T G17427T C17747T A17858G C18060T T28144C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_486048
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2910/2020
 ATTAAAGGTT1- C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486051
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2921/2020
 AT1GA A4T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872T

EPI_ISL_486052
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2928/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T T7341C C8782T C17747T A17858G C18060T A22429G T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486053
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2929/2020
 AT1GA A4T C36T C241T C1059T C3037T A3934G G7560A C14408T C21221T A23403G G25563T G29864A TG29867AA C29870A

EPI_ISL_486055
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_486056
 2020-03-29 2020-07-10
 United States hCoV-19/USA/WA-UW-2937/2020
 AT1GA A4T AA34TT C5784T C8782T C17747T A17858G C18060T G26730A T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486830
 2020-03-29 2020-07-10
 United States hCoV-19/USA/OR-PROV-029/2020
 G11083T C14805T G26144T GTTA26158-

EPI_ISL_487654
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4114C C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487698
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488458
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-282DEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5206T C14408T A23403G T25202K C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488467
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294F3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488474
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-282DB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488487
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294F8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488491
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-283258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G8102T G8322A T10567A G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488535
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-283522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19185T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488560
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-28355F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488563
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-282E0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2869G C3037T C14408T G17278T A23403G GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488593
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294F4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488603
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-282A9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16329T A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488633
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-2834DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G G2494A C9223T G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488638
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294BFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K C28854T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488659
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-282FE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T T25202K G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488687
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-282E55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488689
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-295095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488700
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-2834CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488719
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294E41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488720
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-2833BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C593T T1339C A2480G C2558T G11083T C14805T C23536Y T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488727
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294F99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488733
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294BE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C225Y G910R G6463R G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488746
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-294FA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C13667T C14805T A16319W G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488905
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488925
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488937
 2020-03-29 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A G12749A C14408T A23403G C23731T G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491154
 2020-03-29 2020-07-16
 Oman hCoV-19/Oman/6990/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T G4255T C14408T A20355G A23403G C25702T A26530G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491916 MT776410
 2020-03-29 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815T A2581R C3037T C9936Y C14408T C16111T A23403G G25437T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492890
 2020-03-29 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C58C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493415
 2020-03-29 2020-07-21
 Singapore hCoV-19/Singapore/655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C6310A C6312A G11083T C13730T C14536Y C19524T C23929T C28311T G29737S AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_493417
 2020-03-29 2020-07-21
 Singapore hCoV-19/Singapore/657/2020
 ATTAAAGGTTTATACC1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_493419
 2020-03-29 2020-07-21
 Singapore hCoV-19/Singapore/659/2020
 T78G T1368C C6990T G11083T C14805T C20736T C23707T G26144T AAAAAAAAAAAA29892-

EPI_ISL_497806
 2020-03-29 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501199
 2020-03-29 2020-07-31
 Malaysia hCoV-19/Malaysia/3012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AAGTCATTT686- A3223G C6312A C9438T C9803T G11083T C13730T C23929T C28311T T29867A C29870A

EPI_ISL_501620
 2020-03-29 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260EFBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1505A C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506985
 2020-03-29 2020-08-02
 South Korea hCoV-19/Korea/KCDC2191/2020
 ATTAAAGGTTTAT1- G5572T G11083T C14805T G26144T G27441T G28580T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507076
 2020-03-29 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4931T C14408T A23403G C26534T C28312T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_507077
 2020-03-29 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D2A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C26534T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_507093
 2020-03-29 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D3BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507883
 2020-03-29 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T G16793R A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507907
 2020-03-29 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C193T C241T C1059T C3037T C14408T A23403G C24378T G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_508661
 2020-03-29 2020-08-04
 Spain hCoV-19/Spain/Barcelona-COV005626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T A9922C C14408T T17863C A20268G A23403G C24802T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_508904
 2020-03-29 2020-08-04
 France hCoV-19/France/ARA16170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C3037T C14408T C15324T G21399T A23403G C27513T C27874T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508905
 2020-03-29 2020-08-04
 France hCoV-19/France/ARA16213/2020
 ATTAAAG1- C241T C3037T C14408T G18315A G21724T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508906
 2020-03-29 2020-08-04
 France hCoV-19/France/ARA16220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTC1- C241T C337T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508907
 2020-03-29 2020-08-04
 France hCoV-19/France/ARA16251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C3373A C6113T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509758 MT846462
 2020-03-29 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0700/2020
 AT1- C8782T C17747T A17858G C18060T A24694T T28144C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_510902
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT0641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C3140T C14408T A23403G G24077T G27014T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510903
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT0642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510905
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT0644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510906
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT0645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G11083T C12880T C14408T C14639T T18954C A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511176
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT0919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T T9660C C14408T A22108G A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511177
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT0920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTA1- C2143T C8782T T9477A C14805T G25785T G25979T T28144C C28657T C28863T C29200T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511190
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT1229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T27299C C27944T G28632T GGG28881AAC T29148C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511360
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT1401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T721C C3037T C14408T G18910T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511419
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT1460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511466
 2020-03-29 2020-08-07
 Portugal hCoV-19/Portugal/PT1507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24794T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511516
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT0967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- G91A C241T C3037T G11083T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511517
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT0968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511521
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT0972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T9477A C14805T A21694G G25979T T28144C C28657T C28863T C28932T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511648
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT1101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G376T C1059T C3037T T13006C C14408T A23403G G25563T C25688T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511767
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT1224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T G11083T T14394C C14408T G16852T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511768
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT1225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T G11083T T14394C C14408T G16852T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511769
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT1226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T G11083T T14394C C14408T G16852T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511771
 2020-03-29 2020-08-08
 Portugal hCoV-19/Portugal/PT1228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C10623T C11620T C14408T A23403G G25429T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_513305 MT704823
 2020-03-29 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_8ZK/2020
 C241T C1059T C3037T C14408T G15380T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_513306 MT704824
 2020-03-29 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_9ZK/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_513307 MT704825
 2020-03-29 2020-07-03
 Germany SARS-CoV-2/human/DEU/SCoV2_10ZK/2020
 AAGTCATTT686- G1440A G2891A A9935G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_515270
 2020-03-29 2020-08-18
 United States hCoV-19/USA/ID-UW-4601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T T833C C1059T C3037T C9636T C14408T A23403G G25563T C27964T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515277
 2020-03-29 2020-08-18
 United States hCoV-19/USA/WA-UW-4599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- G6362A C8782T C17747T A17858G C18060T T28144C GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515284
 2020-03-29 2020-08-18
 United States hCoV-19/USA/WA-UW-4620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T C16887T A23403G G25563T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515285
 2020-03-29 2020-08-18
 United States hCoV-19/USA/WA-UW-4623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515340
 2020-03-29 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0058/2020
 ATTAAAGGTTTATACCTTC1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515341
 2020-03-29 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0059/2020
 C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515342
 2020-03-29 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0060/2020
 ATTA1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_516351
 2020-03-29 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516360
 2020-03-29 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_516363
 2020-03-29 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C14408T G22017K A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518867 MT920006
 2020-03-29 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A28858G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_520720
 2020-03-29 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920632111/2020
 C241T C3037T C14408T A21169G A23403G GGG28881AAC

EPI_ISL_523605
 2020-03-29 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3874T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524534
 2020-03-29 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-171CC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G23405A C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524563
 2020-03-29 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-170E00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C4931Y C8782T T9477A C14183T C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524696
 2020-03-29 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524706
 2020-03-29 2020-08-28
 United Kingdom hCoV-19/England/LOND-126169D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10135C G14188A C14408T A23403G G28001T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525637
 2020-03-29 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-32689-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C7932T C14408T A23403G G25563T C26522T C29585T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_526819
 2020-03-29 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T G16917T C17747T A17858G C18060T A24694T C26256T T28144C TCACCGAGGCCACGCGGAG29729-

EPI_ISL_526821
 2020-03-29 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A38R C241T C1059T C3037T C3619T C14408T C16750T T22939C A23403G G25563T C29870A

EPI_ISL_526825
 2020-03-29 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T A8633G C14408T A23403G G25563T G29736T C29870A

EPI_ISL_529135
 2020-03-29 2020-09-10
 Japan hCoV-19/Japan/QH-329-037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2110T C2416T C3037T G8371T C14408T T21048C A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_530050
 2020-03-29 2020-09-10
 Spain hCoV-19/Spain/MD-LP46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16744A A19409G A20268G G21190A A23403G C24023T T26301G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530224 MT997746
 2020-03-29 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1628/2020
 ATTAAAGGTTTATACCT1- C8782T A17858G C18060T A24694T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_534900
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3AC2/2020
 A7479G G11083T C14805T T17247C T17445C C25572T G26144T A26530G C28887T

EPI_ISL_534915
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3EA8/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27970T GGG28881AAC G29513T

EPI_ISL_534935
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACG1- C241T C3037T G11083T C14408T A23403G TTTGTGCTT27785- GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_534938
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B41F9/2020
 G1440A G2891A AAAAAAAAAAAAAAA29889-

EPI_ISL_534939
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4205/2020
 G1440A G2891A T9931C A11268G A27669G

EPI_ISL_534944
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B42AB/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_534945
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B42BA/2020
 C241T G2164T C3037T C14408T G17014T A23403G C24579T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_534976
 2020-03-29 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4803/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C14708T A23403G G24038T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_536312
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536313
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C8986T C14408T A20755C A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536319
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242384/2020
 ATTAAAGGTTTA1- C241T T2083C C3037T C5512T T9667C C14408T A23403G G25947T G28361A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536322
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242487/2020
 ATTAAAGGTT1- C241T C3037T C14408T C15324T T20315C A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536323
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C15324T T20315C A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536328
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242576/2020
 ATTAAAGGTT1- C241T C1059T C3037T C3096Y C7072T C7945T T11611C C14408T A23403G G25563T G28086R T28088W CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_536331
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G15260T A20755C C22388T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536332
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242684/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C7072T T11611C C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_536335
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T G28086R T28088W AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536353
 2020-03-29 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243284/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T G27877T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_537390
 2020-03-29 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T T13006C C14408T G15340A G17302T T18648A A23403G G25563T C25688T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_537493
 2020-03-29 2020-09-16
 United States hCoV-19/USA/CA-UCLA-154/2020
 ATTAAAGGTTTATA1- C2676T C8782T C21575T A22606T G23755T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_537512
 2020-03-29 2020-09-16
 United States hCoV-19/USA/CA-UCLA-202/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T T6905G C14408T A23403G G25563T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_537856
 2020-03-29 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538462
 2020-03-29 2020-09-17
 Singapore hCoV-19/Singapore/930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538463
 2020-03-29 2020-09-17
 Singapore hCoV-19/Singapore/931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C26882T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538464
 2020-03-29 2020-09-17
 Singapore hCoV-19/Singapore/932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5429A G9220A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538819
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19547T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538928
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9CF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538948
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C2416T C3037T C14408T A23403G C25508T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538961
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9E1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15371T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538966
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T G13627T C14805T C15540T G17808T G26144T C26911T A28338G C29721T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538968
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G C25508T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538972
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9D2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C15952T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539013
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A86F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4897T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539038
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8A55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539086
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912Y C3037T A10948G C12973Y C14408T A23403G C26060Y C27542T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539187
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A84FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10449T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539200
 2020-03-29 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A841B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539820
 2020-03-29 2020-09-21
 China hCoV-19/Hong Kong/VM20006777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6027T C6629T A10236G G11083T C14805T T17247C G23900C G26144T G28083T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541771
 2020-03-29 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286ED6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541782
 2020-03-29 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286D7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10236G C14408T C17163T A23403G GGG28881AAC G29315S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542578
 2020-03-29 2020-09-23
 United States hCoV-19/USA/TX-HMH-1190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T14104C C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542615
 2020-03-29 2020-09-23
 United States hCoV-19/USA/TX-HMH-1256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565962
 2020-03-29 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G17790K C18707A A23403G G25563T C25976A TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

MT293163
 2020-03-29 2020-04-03
 United States SARS-CoV-2/human/USAUNKNOWN-UW398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGA1- C5170T C8782T C16468T T17673C C17747T A17858G C18060T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MT380728
 2020-03-29 2020-04-24
 United States SARS-CoV-2/human/USA/DC-CDC-1734/2020
 C241T C1059T C3037T C14408T A23403G C24034T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT459837
 2020-03-29 2020-05-11
 Greece SARS-CoV-2/human/GRC/35_36913/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T C20402T G24926T G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT459841
 2020-03-29 2020-05-11
 Greece SARS-CoV-2/human/GRC/39_36914/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2590G C3037T C14408T C18264T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT477849
 2020-03-29 2020-05-14
 United States SARS-CoV-2/human/USA/AK077/2020
 ATTAAAGGTTTATAC1- C241T C3037T C6504T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT706289
 2020-03-29 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G6894T C19029T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706290
 2020-03-29 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10626T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT811314
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0685-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C11671T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811315
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0686-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811316
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0687-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- T833C C1059T C3037T C14408T G20275T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811320
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0696-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811328
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0706-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811332
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0713-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C335T C1059T C3037T C14408T A23403G G25563T C29245T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811433
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0941-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811437
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0953-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G9105A C14408T A23403G C25614T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811438
 2020-03-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0955-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

NMDC60013220
 2020-03-29 2020-06-01
 China hCoV-19/Guangzhou/ID111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417004
 2020-03-30 2020-03-23
 Belgium hCoV-19/Belgium/ULG-3000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417014
 2020-03-30 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15852T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417015
 2020-03-30 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447A C3037T C7564T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420142
 2020-03-30 2020-04-05
 Georgia hCoV-19/Georgia/Tb-1523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1397A G11083T C14925T C26029A C26058T ATG27985GAA T28688C G29742T -29904AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_420751
 2020-03-30 2020-04-06
 United Kingdom hCoV-19/England/20140038704/2020
 C241T C3037T C8357T C14408T A23403G GGG28881AAC

EPI_ISL_420767
 2020-03-30 2020-04-06
 United Kingdom hCoV-19/England/20142060804/2020
 C241T C3037T C14408T T14709C A23403G GGG28881AAC

EPI_ISL_420772
 2020-03-30 2020-04-06
 United Kingdom hCoV-19/England/20142061804/2020
 C241T C3037T C5826T C14408T C16289T A23403G G25429T G27703T G28576A

EPI_ISL_421183
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10003/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T C19102T C21575T A23403G G25563T

EPI_ISL_421184
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10004/2020
 C241T C1059T C3037T C4320T G11083T C14408T C19264T C21590T TTT21990- A23403G G25563T C25688T

EPI_ISL_421186
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10007/2020
 C241T C3037T G4255T C14408T G20995T A23403G A26530G

EPI_ISL_421187
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10008/2020
 C241T A618G C3037T C14408T C15024T C15324T C16887T A23403G C27679T

EPI_ISL_421189
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10011/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T C19102T C21575T A23403G G25563T

EPI_ISL_421190
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10012/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T C26042T

EPI_ISL_421200
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10026/2020
 C241T C2113T C3037T C7765T C14408T C15928T C17690T C18877T A23403G G25563T

EPI_ISL_421204
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10030/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_421205
 2020-03-30 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10031/2020
 G105A C241T C2773T C3037T C14408T G17193T C18348T A23403G

EPI_ISL_421938
 2020-03-30 2020-04-09
 United Kingdom hCoV-19/England/20144018204/2020
 G11083T C14805T T16906C A17066W T17247C A22375R G26144T

EPI_ISL_422002
 2020-03-30 2020-04-09
 United Kingdom hCoV-19/England/20148006104/2020
 A2480G C2558T G11083T C14805T G20126R G26144T

EPI_ISL_422022
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26D49/2020
 C241T C3037T C14408T C21242T A23403G G25947T GGG28881AAC

EPI_ISL_422023
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26981/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422031
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26DD0/2020
 A1- C241T C3037T T3788Y G5561A C14408T C21242T A23403G GGG28881AAC

EPI_ISL_422035
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26D58/2020
 AT1- C241T C1059T C3037T C14408T C16887T A23403G G24368T G25563T

EPI_ISL_422040
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26D1C/2020
 A1- G1440A G2891A C14599Y C25669Y G28851T

EPI_ISL_422047
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26F34/2020
 C241T C1059T C3037T G9136T C14408T T15684C A23403G G25563T

EPI_ISL_422050
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26DEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A C24382T C25669T G28851T

EPI_ISL_422051
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26A51/2020
 A1- G1440A G2891A G17523T G24140T G28851T C29592T

EPI_ISL_422058
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26E91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C7165T G11083T C14805T A23702T G26144T

EPI_ISL_422059
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26FE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A G4720T C16329T A27669G

EPI_ISL_422061
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26E82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_422062
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-269AF/2020
 ATTA1- C241T A489G C3037T C14408T A20268G A23403G G23593K C28854T

EPI_ISL_422068
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26EFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A C1722T G2891A G28851T

EPI_ISL_422076
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26D3A/2020
 C241T C3037T G4504A G6364T G11801A C14408T T16671C T19839C A23403G G25552T GGG28881AAC

EPI_ISL_422081
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26EBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14120T C14408T A23403G G24368T C24621T G25563T C28893T C29353T

EPI_ISL_422088
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26DC1/2020
 C241T C1911T C3037T G4504A G6364T G11801A C14408T T16671C T19839C A23403G G25552T GGG28881AAC

EPI_ISL_422089
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26DA3/2020
 G1440A G2891A C25669T G28851T

EPI_ISL_422090
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26ECE/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T T18843Y A20268G A23403G

EPI_ISL_422097
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26D0D/2020
 ATTAAAGGTTTATACCTTCCCA1- G11083T C14805T T17247C G26144T C29482T

EPI_ISL_422115
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26EDD/2020
 AT1- C3738T G11083T G12188T C14805T T17247C G26144T

EPI_ISL_422120
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26FBC/2020
 ATTA1- C241T C3037T C14408T A21999G A23403G T26512C

EPI_ISL_422122
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26E73/2020
 AT1- C241T C3037T C14408T A21999G A23403G C23709T T26512C

EPI_ISL_422123
 2020-03-30 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26FCB/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_422566 LR878061
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/Friesland_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422576 LR878000
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422577 LR877999
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C8733T C11109T C14408T A23403G G25563T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422578 LR878001
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3768T G6337A C14408T G16945T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422579 LR878005
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422580 LR878014
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A6731T G11083T C14805T C23707T G26144T T27384C C27881T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422581 LR878008
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C18647T C26681T T29238C G29628T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422583 LR878010
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422585 LR878011
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T A12121G C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422632 LR878013
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422787 LR877992
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422788 LR877988
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422790 LR877985
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C5284T C14408T T16456G C20051T A23403G C24117T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422791 LR877991
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422792 LR877996
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C11109T C12415T C14408T A23403G G25563T G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422793 LR877987
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C486T C3037T C14408T C20719T A23403G T28678A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422794 LR878006
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422795 LR878002
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422796 LR878003
 2020-03-30 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423393
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20140064004/2020
 G2659T G11083T G13627T C14805T C15540T C23127T G26144T A28338G

EPI_ISL_423394
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20140064504/2020
 C110T C241T G1883R C2416T C3037T C14408T C17069A C18557T G20578T A23403G G25563T

EPI_ISL_423400
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20140068404/2020
 A12C C241T C2416T C3037T G3246K C8290Y C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_423404
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20140069404/2020
 C241T C3037T C14408T C17004Y A23403G GGG28881AAC

EPI_ISL_423408
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20140070504/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423409
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20140070604/2020
 C241T C3037T C14408T C18029Y A23403G GGG28881AAC

EPI_ISL_423410
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20140070804/2020
 C241T C3037T C14408T A23403G C25482T GGG28881AAC

EPI_ISL_423424
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142002704/2020
 C241T C3037T C3373A C6752T C11195T C14408T C15216T A23403G GGG28881AAC

EPI_ISL_423425
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142002904/2020
 C241T C313T C3037T C14408T A23403G C27128T GGG28881AAC

EPI_ISL_423426
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142003904/2020
 A7755G G11083T G13627T C14805T C15540T C16466Y A16638G G26144T A28338G G28851T

EPI_ISL_423436
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142016504/2020
 C241T C3037T G6463R C6573T C8655Y C14408T G22992S A23403G C25528T GGG28881AAC

EPI_ISL_423437
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142016704/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_423438
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142018004/2020
 C241T C3037T C14408T A20268G C22295T A23403G G29734C

EPI_ISL_423460
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142079504/2020
 C241T AAGTCATTT686- C3037T C14408T A23403G G25429T C25916T

EPI_ISL_423461
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142079804/2020
 A2480G C2558T TG2800YK C7011T C10615T G11083T G11405A C14805T A19476G G26144T C28869T

EPI_ISL_423466
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142083804/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_423467
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20142130404/2020
 A2480G C2558T G11083T C14805T A18802R G26144T G27870K

EPI_ISL_423495
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20144006704/2020
 C241T C3037T G10097A C14408T A23403G C23731T C27684T GGG28881AAC

EPI_ISL_423496
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20144006904/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423506
 2020-03-30 2020-04-12
 United Kingdom hCoV-19/England/20144011504/2020
 C8782T C15216T C17747T A17858G C18060T C27769T T28144C

EPI_ISL_425149
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425151
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3463G C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425152
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425159
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4755T C8316T C14408T G15760A T20157C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425162
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11591T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425163
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16830T C16887T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425165
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425166
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425169
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G28539T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425171
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A14330G C14408T A23403G T27299C A27989G GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425173
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A C16428T T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425174
 2020-03-30 2020-04-14
 United States hCoV-19/USA/WI-UW-117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425231
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7374F/2020
 G160T C241T G2625A C3037T C13862T C14408T T17565C A23403G G26529T C28836T

EPI_ISL_425232
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7375E/2020
 C241T C3037T T8125C T8395C C14408T C19488T A23403G GGG28881AAC

EPI_ISL_425233
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7376D/2020
 C241T C3037T C6027T C14408T A23403G GGG28881AAC

EPI_ISL_425235
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7378B/2020
 C241T C3037T C10755T C14408T A23403G GGG28881AAC

EPI_ISL_425236
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7379A/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425238
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-737B8/2020
 A2480G C2558T G3971T G11083T C14805T G26144T G28380T

EPI_ISL_425248
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73888/2020
 C241T T1099C C3037T C4002T C5643T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_425257
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73949/2020
 C241T C1059T C3037T C14408T A23403G G25217T G25563T

EPI_ISL_425277
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73ADD/2020
 G1440A G2891A C4668T C21742T

EPI_ISL_425281
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74368/2020
 C241T C392T C3037T C11563T C14408T C19488T A23403G GGG28881AAC

EPI_ISL_425309
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7459F/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425423
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76D1D/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_425425
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76D59/2020
 A2480G C2558T G11083T C14805T A19352C T21709C G26144T

EPI_ISL_425430
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76DFF/2020
 C241T C664T C3037T C14408T A20268G A23403G C23430T G26230T C28926T C29545A G29759T

EPI_ISL_425431
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76E1A/2020
 C241T C3037T C14408T A23403G C25521T G28514T

EPI_ISL_425433
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76E56/2020
 C241T C3037T C14408T C18060T A23403G G28514T

EPI_ISL_425628
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EA30/2020
 C241T C703T C3037T C14408T T15351G G21518T A23403G C28310A

EPI_ISL_425632
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EA7C/2020
 ATG1605- C14220T C20270T C23525T C25728T

EPI_ISL_425635
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EAA9/2020
 G1440A G2891A A27669G

EPI_ISL_425637
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EAC7/2020
 C241T C3037T A7877G T11798C C14408T C16289T TTTGGGTGTTTA21982- A23403G G25429T

EPI_ISL_425638
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EAD6/2020
 ATG1605- G4504T C13965T C20270T

EPI_ISL_425639
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EAE5/2020
 C241T C3037T C14408T A23403G G25429T C25587T C28045T

EPI_ISL_425640
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EAF4/2020
 C241T C3037T C6312A A10948G C14408T A23403G GGG28881AAC

EPI_ISL_425642
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/England/NOTT-10EB2E/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_425976
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB342/2020
 C241T C3037T C14408T C16289T A23403G G25429T G28077T

EPI_ISL_425978
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB354/2020
 C7423T A29780C

EPI_ISL_425980
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB356/2020
 C241T C3037T T14079C C14408T A23403G GGG28881AAC

EPI_ISL_425985
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB373/2020
 C241T C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_425986
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB374/2020
 C222T C241T C3037T C4252T C14408T A23403G GGG28881AAC

EPI_ISL_425987
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB378/2020
 C241T C3037T C6606T C14408T A23403G T23590C C25782T GGG28881AAC

EPI_ISL_425988
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB379/2020
 C241T T1252G C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_425990
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB383/2020
 C241T C313T C3037T C14408T C17676T A23403G GGG28881AAC

EPI_ISL_425991
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB386/2020
 G1440A G2891A C10507T G25563T

EPI_ISL_425992
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB389/2020
 C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_425993
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB390/2020
 

EPI_ISL_425994
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB391/2020
 C241T C1059T C3037T C11747T C14408T C22987T A23403G T24475A G25563T

EPI_ISL_425995
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB392/2020
 C241T C3037T C8074T C14408T A20268G C21846T A23403G G28727T G29734C

EPI_ISL_425996
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB396/2020
 C241T C3037T C14408T C21549T A23403G C28754T GGG28881AAC

EPI_ISL_425997
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB397/2020
 C241T C3037T C11866T C14408T A23403G C25433T

EPI_ISL_425998
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB399/2020
 

EPI_ISL_426000
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB407/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_426001
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB409/2020
 A2480G C2558T C5221T G11083T C14805T G26144T

EPI_ISL_426002
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB410/2020
 

EPI_ISL_426003
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB412/2020
 C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_426005
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB420/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_426006
 2020-03-30 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB421/2020
 

EPI_ISL_426052
 2020-03-30 2020-04-14
 United States hCoV-19/USA/CT-UW-4344/2020
 ATTAAAGGTTTATACCTTCCCA1- A31T C36T C241T C1059T C3037T C10851T C14408T A23403G G25563T -29904AAAAAAAA

EPI_ISL_426053
 2020-03-30 2020-04-14
 United States hCoV-19/USA/CT-UW-4346/2020
 ATTAAA1- A31T AC35WT C241T C1059T C3037T C3140T T9995G C14408T C16260T A23403G G25563T C28821A -29904AAAAAAA

EPI_ISL_426054
 2020-03-30 2020-04-14
 United States hCoV-19/USA/CT-UW-4347/2020
 ATTAAAGGTTTAT1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T TGG21294AAA A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_426055
 2020-03-30 2020-04-14
 United States hCoV-19/USA/CT-UW-4366/2020
 ATTAAAGGTT1- A31T AAC34TTT C241T C1059T C3037T C11916T C13515T C14408T C18998T A23403G G25563T G29540A -29904AAAAAAAAAAAAAA

EPI_ISL_426056
 2020-03-30 2020-04-14
 United States hCoV-19/USA/CT-UW-4372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C3768T C10851T C14408T A23403G G25563T C25584T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426072 MT345885
 2020-03-30 2020-04-14
 United States SARS-CoV-2/human/USA/ID-UW-4427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T T833C C1059T C3037T C14408T G18762T A23403G G25563T C27964T G29862A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_426135 MT345881
 2020-03-30 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-4404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_426285
 2020-03-30 2020-04-15
 Latvia hCoV-19/Latvia/05/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T

EPI_ISL_426286
 2020-03-30 2020-04-15
 Latvia hCoV-19/Latvia/06/2020
 C241T C3037T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_426287
 2020-03-30 2020-04-15
 Latvia hCoV-19/Latvia/07/2020
 C241T C3037T G7042T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_426288
 2020-03-30 2020-04-15
 Latvia hCoV-19/Latvia/08/2020
 C241T C3037T C14408T C15324T A23403G C28706T

EPI_ISL_426289
 2020-03-30 2020-04-15
 Latvia hCoV-19/Latvia/09/2020
 C241T C3037T C6336T C8247T C14408T C16750T A23403G A26530G

EPI_ISL_426456 MT350238
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_426457 MT350239
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0049/2020
 ATTAAA1- G7T T25Y C241T A652T C1059T C3037T C14408T C20371A A23403G G25563T C27688T

EPI_ISL_426458 MT350240
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0050/2020
 ATTA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_426469 MT350251
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0061/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T T19355Y A23403G G25563T C29870A

EPI_ISL_426560
 2020-03-30 2020-04-17
 United States hCoV-19/USA/AZ-TG273286/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427010 MT451506
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC731/2020
 C241T C313T C3037T C14408T T20064C A23403G GGG28881AAC

EPI_ISL_427013 MT451509
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC734/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_427019 MT451515
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC741/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_427029 MT451523
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC752/2020
 C228T G1397A G9479T A9514G G11083T G26720C T28688C T28835C G29742T

EPI_ISL_427054
 2020-03-30 2020-04-17
 Australia hCoV-19/Australia/VIC779/2020
 ATG1605- A1904G C5628T C5826T C8090T C10789T G11083T C11471T C11824T

EPI_ISL_427055 MT451544
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC780/2020
 C241T C3037T G8102T C14408T A23403G GGG28881AAC

EPI_ISL_427058 MT451547
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC783/2020
 C241T C3037T T7438C C14408T T15166C A23403G A26864G C29353T

EPI_ISL_427060 MT451549
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC785/2020
 C241T C3037T T7438C C14408T A21944T A23403G C29353T

EPI_ISL_427159 MT451636
 2020-03-30 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC931/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_427162 MT358651
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/CT-UW-4238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C36T C241T C1059T C3037T C6361T C10632T C14408T C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_427165 MT358673
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/CT-UW-4341/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C6026T C14225B C14408T C19554T A23403G G25563T T27098G C28836T

EPI_ISL_427169 MT358652
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/ID-UW-4239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_427170 MT358655
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/ID-UW-4266/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AC35WT C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_427262 MT358667
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4324/2020
 ATTAAAG1- A31T AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_427266 MT358671
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4335/2020
 ATTAAAGG1- AAC34TTT G2840A G5572T C8782T C17747T A17858G C18060T A26045G T27838A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427268 MT358672
 2020-03-30 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T AAC34WWT C241T C1059T C3037T T5165C C6040T T6779A C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427629
 2020-03-30 2020-04-19
 United States hCoV-19/USA/NY-NYUMC229/2020
 C241T C1059T C1594T C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A

EPI_ISL_428366
 2020-03-30 2020-04-20
 France hCoV-19/France/HF4220/2020
 C241T C1059T C3037T C6541T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_428853
 2020-03-30 2020-04-22
 Italy hCoV-19/Italy/FVG-ICGEB_S14/2020
 -2AA C241T C3037T C14408T A23403G G29009A A29891T AAAAAAAA29893GCCGGGCG A29903GTGGCG

EPI_ISL_428854
 2020-03-30 2020-04-22
 Italy hCoV-19/Italy/FVG-ICGEB_S18/2020
 C241T C3037T C14408T A23403G G29009A AAAA29900-

EPI_ISL_428914
 2020-03-30 2020-04-22
 Russia hCoV-19/Russia/Buryatia-87104/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428919
 2020-03-30 2020-04-22
 Russia hCoV-19/Russia/Buryatia-87106/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428920
 2020-03-30 2020-04-22
 Russia hCoV-19/Russia/Buryatia-87105/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428922
 2020-03-30 2020-04-22
 Russia hCoV-19/Russia/Sverdlovsk-86704/2020
 C241T C3037T C14408T C20762T A23403G GGG28881AAC

EPI_ISL_428928
 2020-03-30 2020-04-22
 Poland hCoV-19/Poland/PL_P5/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G4162T C14408T A23403G G25429T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_429602 MT375432
 2020-03-30 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4564/2020
 ATTAAAG1- GTT8ACA C241T C1059T C3037T C14408T A23403G G25563T G28541T G29553A

EPI_ISL_429603 MT375433
 2020-03-30 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_429884
 2020-03-30 2020-04-24
 Taiwan hCoV-19/Taiwan/284/2020
 C6312A G11083T C11941T C13517T C13730T C23929T G27915A C28311T AAAAAAAAAAAA29892-

EPI_ISL_429971 MT415896
 2020-03-30 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0071/2020
 ATTAA1- T490A C3177T C5339T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_429978
 2020-03-30 2020-04-24
 United States hCoV-19/USA/VA-DCLS-0079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C2416T C3037T G4523A C10712T C14408T ATCCATTTTTGGGTGTTTATT21975- A23403G G25563T G29868A C29870A

EPI_ISL_429983 MT415906
 2020-03-30 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0086/2020
 C241T C274A C2416T C3037T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_430000 MT811552
 2020-03-30 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0042-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A7479G -11075TTT G11083T C14805T T17247C C25572T G26144T C28887T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430009 MT811560
 2020-03-30 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0052-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430012 MT811562
 2020-03-30 2020-04-24
 Jordan SARS-CoV-2/human/JOR/SEARCH-0054-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_430115 MT627628
 2020-03-30 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S261/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430326
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC299/2020
 C241T C1059T C3037T T9070C C14408T G18170A A23403G G25563T C28435T

EPI_ISL_430327
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC300/2020
 G10754A G11083T C14805T T17247C G26144T

EPI_ISL_430328
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC301/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430329
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC302/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430330
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC303/2020
 C241T G428A C1059T C3037T T9171A C12809T C14408T A17950G A23403G G25563T C26625T

EPI_ISL_430331
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC304/2020
 C241T C1059T A2018G C3037T C14408T T21995C A23403G G25563T

EPI_ISL_430332
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC305/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_430333
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC306/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430334
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC307/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430335
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC308/2020
 C241T C1059T C3037T C14408T A23403G G25563T C28821A

EPI_ISL_430336
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC309/2020
 C241T C1059T C3037T C11747T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_430337
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC310/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430338
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC311/2020
 C21T C241T C1059T C3037T C14408T A21562- A23403G G25563T C25587T

EPI_ISL_430339
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC312/2020
 C3037T C14408T

EPI_ISL_430340
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC313/2020
 C241T C3037T C14408T G17197A C18877T A23403G C23679T G25563T

EPI_ISL_430341
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC314/2020
 C241T C1059T C2880T C3037T C14408T T19149C A23403G G25563T

EPI_ISL_430342
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC315/2020
 C241T C1059T C3037T G11966T C13005T C14408T A23403G G25563T

EPI_ISL_430343
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC316/2020
 C241T C3037T C7644T C14408T C18877T A23403G G25563T

EPI_ISL_430344
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC317/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_430345
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC318/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430346
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC319/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430347
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC320/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430348
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC321/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430349
 2020-03-30 2020-04-26
 United States hCoV-19/USA/NY-NYUMC322/2020
 C241T C1059T C3037T C11747T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_430543 MT451667
 2020-03-30 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC982/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_430545 MT451668
 2020-03-30 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC983/2020
 C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_430799
 2020-03-30 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T A20268G A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_430800
 2020-03-30 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_430940 MT412297
 2020-03-30 2020-04-28
 United States SARS-CoV-2/human/USA/ID-UW-4255/2020
 ATTAAAGG1- TT9CC A31T AAC34TTT C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T G29868A C29870A

EPI_ISL_430943 MT412300
 2020-03-30 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-4338/2020
 ATTAAA1- AAC34TTT C241T C1059T C1514T C3037T C14408T A23403G G25563T G29553A C29870A

EPI_ISL_430944 MT412301
 2020-03-30 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-4343/2020
 ATTAAAGGTTTATACC1- C36T C241T AAGTCATTT686- C1059T G2808A C3037T G3145T C14408T A23403G G25563T A26433G G29864A TG29867AA C29870A

EPI_ISL_430945 MT412302
 2020-03-30 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-4345/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G T27560C GGG28881AAC G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAA

EPI_ISL_430946 MT412303
 2020-03-30 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-4348/2020
 ATTAAAGGTTT1- G23A C241T C3037T C13517T C14408T A23403G C25350T G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_432180
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27A9C/2020
 ATT1- C241T C3037T C9286Y C14408T A15709G A20268G A23403G C28854T A29865R

EPI_ISL_432198
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27ABA/2020
 C241T C1059T C1912T C3037T C14408T G15380T C17012T A23403G G25563T C29514T

EPI_ISL_432211
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2764D/2020
 C241T C3037T T5465C C14408T G21624T A23403G G24102R GGG28881AAC

EPI_ISL_432222
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27B3F/2020
 A1- C241T C3037T T3100G G10097A C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_432227
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27AAB/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432235
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-272FE/2020
 C241T C3037T C6990T C14408T A23403G C29200T AAAAAAAAAAAAA29891-

EPI_ISL_432250
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2722B/2020
 ATTAAAGGTTTATACCTTC1- A2345T A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_432255
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27531/2020
 A1- C241T C3037T C14408T C21110Y A23403G GGG28881AAC

EPI_ISL_432257
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2762F/2020
 ATTAA1- G1589R ATG1605- T4949C G11831A C16887T G18651A

EPI_ISL_432262
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2720D/2020
 AT1- A1515G C3903T C9223T G11083T T13064C C14805T T17247C G26144T

EPI_ISL_432266
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27513/2020
 ATTA1- C241T C3037T G11083T C14408T A23403G A25575C

EPI_ISL_432290
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2730A/2020
 C241T C3037T C14408T C22326Y A23403G G24626T G28857T

EPI_ISL_432293
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27504/2020
 ATTA1- C241T C3037T G11083T C14408T A23403G A25575C

EPI_ISL_432301
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27407/2020
 G1148T A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_432481
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CA0B7/2020
 C241T C3037T C14408T A23403G

EPI_ISL_432487
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CA1F0/2020
 C2558T G11083T C14805T A24340T G26144T C29167T

EPI_ISL_432517
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CBECB/2020
 C241T C3037T C14408T C14786T T15648C A23403G GGG28881AAC

EPI_ISL_432551
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CD97D/2020
 G11083T C14805T G26144T

EPI_ISL_432601
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CFE03/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_432644
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-D1F56/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432720
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C0FB4/2020
 C241T C3037T T9124C C14408T C16101T A18616G A23403G GGG28881AAC

EPI_ISL_432734
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C1B64/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_432746
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C2626/2020
 G11083T C14805T G26144T

EPI_ISL_432777
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C384D/2020
 C241T C3037T C14408T G15780T A23403G

EPI_ISL_432788
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C4493/2020
 C241T C1419T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432813
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C5DD3/2020
 C241T C3037T C14408T A20268G A23403G C25791T C28854T

EPI_ISL_432828
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C6C11/2020
 ATG1605- G27703T C27752T

EPI_ISL_432831
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C6EA2/2020
 ATG1605- C4586T C18486T G25726T G29032A

EPI_ISL_432867
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C8532/2020
 C241T C1469T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432942
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10EF13/2020
 C106T A2480G C2558T G11083T C14805T A21405G G26144T

EPI_ISL_432951
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10EFB9/2020
 G3052A C6027T G11083T C14805T T18771C G25352T G26144T

EPI_ISL_432954
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10EFF5/2020
 C241T C3037T C14408T A23403G C25350T G25445T

EPI_ISL_432955
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F000/2020
 C241T C3037T C10078T C14408T A23403G G27281T GGG28881AAC C29284T G29405A

EPI_ISL_432956
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F01F/2020
 C241T C3037T C7834T C14408T A23403G GGG28881AAC

EPI_ISL_432961
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F0B5/2020
 C241T C3037T C6541T C14408T C22009T A23403G C27046T C27595T GGG28881AAC

EPI_ISL_433499
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1022/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_433522
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1204/2020
 ATG1605- C12488T C12710T C28854T

EPI_ISL_433538
 2020-03-30 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17278T C20844T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434081 MT633011
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S321/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434152 MT632933
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S392/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_434154 MT632979
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S394/2020
 G1401A C8782T T13438C C17747T A17858G C18060T T28144C

EPI_ISL_434155 MT632815
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S395/2020
 C241T C1059T C3037T A12148T C13536T C14408T C21635T A23403G G25563T G29553A

EPI_ISL_434158 MT632775
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S398/2020
 C241T C1059T C3037T G4975T C14408T G15384T A23403G G25523T G25563T T27869C T29194C

EPI_ISL_434172 MT632925
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S412/2020
 C8782T C12076T C17747T A17858G C18060T T28144C

EPI_ISL_434195 MT632812
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S435/2020
 C241T C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C

EPI_ISL_434213 MT632861
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S453/2020
 C241T C2940T C3037T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_434268 MT632871
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S508/2020
 C241T C3037T C14408T C16376T C18877T A23403G G25563T C27874T

EPI_ISL_434269 MT632982
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S509/2020
 C8782T C17747T A17858G C18060T C25886T T28144C

EPI_ISL_434309 MT632907
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S549/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_434315 MT632900
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S555/2020
 C8782T C17747T A17858G C18060T C18264T C24919T T28144C

EPI_ISL_434321 MT632969
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S561/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434331 MT633022
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S571/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434338 MT632921
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S578/2020
 C3737T C8782T C14898T C15960T C17747T A17858G C18060T T28144C

EPI_ISL_434341 MT632851
 2020-03-30 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S581/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434656
 2020-03-30 2020-04-30
 Sweden hCoV-19/Sweden/20-06503/2020
 C66T C241T C3037T C12439T C14408T C14937T A23403G

EPI_ISL_434955
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH363/2020
 C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T

EPI_ISL_434956
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH364/2020
 C241T C1059T C3037T C10188T C10252T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_434957
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH365/2020
 C241T C3037T A10840G C13138T C14408T G15243T A23403G

EPI_ISL_434963
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH372/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_434965
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH376/2020
 C241T C1059T C3037T C10319T C14408T G22344T A23403G G25563T C27964T

EPI_ISL_434967
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH379/2020
 T490A C3177T C6040T C8782T C8950T G12478A C13019T T18736C T19713C C24034T C26151T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434969
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH381/2020
 T490A G3013A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C A28155G C28896G C29451T A29700G

EPI_ISL_434973
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH385/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_434977
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH390/2020
 C241T C1059T C3037T C14408T A18082G A23403G G25563T C26681T C27964T

EPI_ISL_434989
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH402/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_434996
 2020-03-30 2020-05-01
 United States hCoV-19/USA/TX-HMH410/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_435111
 2020-03-30 2020-05-02
 India hCoV-19/India/NCDC-02415/2020
 C8782T T9477A C14805T A23118M G25979T T28144C C28657T C28863T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_435283
 2020-03-30 2020-05-04
 Indonesia hCoV-19/Indonesia/JKT-EIJK2444/2020
 G11083T C21789T T29685A -29904AAAAAAAAAAAAAAAAAAAA

EPI_ISL_435412
 2020-03-30 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00792/2020
 C241T C337T C1059T C3037T C12049T C14408T A23403G G25563T G29422T

EPI_ISL_435413
 2020-03-30 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00817/2020
 C241T C3037T C4002T G10097A C13536T C14408T C19718T A23403G GGG28881AAC

EPI_ISL_435414
 2020-03-30 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00827/2020
 C241T A964G C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435415
 2020-03-30 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00836/2020
 C241T C313T C3037T C4921T C14408T A23403G G25563T T27829C

EPI_ISL_435417
 2020-03-30 2020-05-04
 Hungary hCoV-19/Hungary/SRC-00777/2020
 C241T C3037T C14408T T19839C C21846T A23403G GGG28881AAC

EPI_ISL_435453
 2020-03-30 2020-05-05
 United States hCoV-19/USA/LA-SR0150/2020
 C40T C241T C1059T C3037T C14408T G16622A A23403G G25563T C27964T

EPI_ISL_435475
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC408/2020
 C241T C3037T A4528G C14408T C18877T C19032T C19049T A23403G G25563T

EPI_ISL_435476
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC409/2020
 C241T C1059T C3037T A8031G G11083T C11916T G13159A C14408T A23403G G25563T

EPI_ISL_435477
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC410/2020
 C241T C1059T T1984C C3037T C10851T C14408T C21575T A23403G G25563T G25593T GAT28280CTA C29738T

EPI_ISL_435478
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC411/2020
 C241T C3037T C5239T C14408T T15264C A23403G

EPI_ISL_435479
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC412/2020
 C241T C1059T C1471T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_435480
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC413/2020
 C241T C1059T C3037T C10889T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_435481
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC414/2020
 C241T C1059T C3037T G6443A C14408T A23403G G25563T G28827T

EPI_ISL_435482
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC415/2020
 C241T C1059T C3037T C4246T A9562G C14408T C16626T A23403G G24712A G25563T C27911T G29830A

EPI_ISL_435483
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NJ-NYUMC416/2020
 C241T C1059T C3037T C11916T C14408T G20002T A23403G G25563T G28376T

EPI_ISL_435484
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC417/2020
 C241T C1059T C3037T C14408T A14836G T22207C A23403G G25563T G25879T

EPI_ISL_435485
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC418/2020
 C241T C3037T G3566A C6198T C14408T C18877T A23403G G25563T

EPI_ISL_435486
 2020-03-30 2020-05-05
 United States hCoV-19/USA/NY-NYUMC419/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29477T

EPI_ISL_436106
 2020-03-30 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-21/2020
 C241T C3037T G3476A C10188T C14408T C15324T A23403G C26013T -29902CCACAAACCAAAACG

EPI_ISL_436979
 2020-03-30 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-580/2020
 C241T C1059T C3037T C14408T A23403G

EPI_ISL_436980
 2020-03-30 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-581/2020
 C241T C1059T C1302T C3037T C11074T C14408T A23403G G25563T

EPI_ISL_436981
 2020-03-30 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-582/2020
 C241T C3037T C13862T C14408T A23403G C28836T G28954A

EPI_ISL_436982
 2020-03-30 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-586/2020
 C241T C1059T C1288T C3037T C13366T C14408T C16726T T20229C A23403G G25563T

EPI_ISL_437272
 2020-03-30 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0077/2020
 A2480G C2558T T2698C G11083T C14805T G26144T A27151T C29750T

EPI_ISL_437275
 2020-03-30 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0081/2020
 G1440A G2891A C27143T

EPI_ISL_437276
 2020-03-30 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0082/2020
 C241T C3037T C14408T A23403G

EPI_ISL_437590
 2020-03-30 2020-05-11
 United States hCoV-19/USA/CA-SR0190/2020
 C241T C3037T G10360A C14408T A23403G G24757T A27938G GGG28881AAC

EPI_ISL_437669
 2020-03-30 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-783/2020
 C241T C3037T C7834T C14408T G20580T A23403G

EPI_ISL_437670
 2020-03-30 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-786/2020
 C241T C3037T C7834T C14408T A23403G C27335T

EPI_ISL_437679
 2020-03-30 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-864/2020
 C241T C3037T C7834T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437825 MT461624
 2020-03-30 2020-05-11
 United States SARS-CoV-2/human/USA/CT-UW-4237/2020
 ATTAAAGGTT1- TA11KW C19V C241T C1059T C3037T C14408T A23403G G25563T TG29867AA C29870A

EPI_ISL_437826 MT461625
 2020-03-30 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-4254/2020
 ATTAAAGGT1- TA11GT TCCC18GGGA C241T T833C C1059T C3037T C6195T C14408T C15720T G21641T A23403G G25563T C27964T -29904AAAAAAAAAAAA

EPI_ISL_437828 MT461628
 2020-03-30 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-4308/2020
 A1G AAA4- TA11GT TCC18GGG C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_437935
 2020-03-30 2020-05-12
 Austria hCoV-19/Austria/CeMM0052/2020
 C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437936
 2020-03-30 2020-05-12
 Austria hCoV-19/Austria/CeMM0053/2020
 C241T C1059T T1921K C3037T C14408T G15380T A16076M G21938K T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438125
 2020-03-30 2020-05-12
 Austria hCoV-19/Austria/CeMM0362/2020
 C241T C3037T C12073T C14408T A23403G C24642T C27046T G28395T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_438333
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/CAMB-76269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1514T A2480G C2558T G11083T C14805T C20759Y T25202K G26144T G29140T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438441
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7624B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T T25202K GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438500
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/CAMB-71DE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_438543
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/CAMB-776F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083K C14408T G16852T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438776
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6371G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439534
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/CAMB-71BDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC AAAAAAAAAAAAAA29890-

EPI_ISL_439876
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/CAMB-71D12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C3037T C14408T C19488T A23403G T25202K GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_439947
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/CAMB-71CBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T GA4207TC G11842T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_442013
 2020-03-30 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C7991/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_443185
 2020-03-30 2020-05-12
 United States hCoV-19/USA/OR-UW-4409/2020
 ATTAAAG1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T A27894G C29870A

EPI_ISL_444616
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC499/2020
 C241T C1059T C3037T A6273G C14408T A23403G G25563T

EPI_ISL_444617
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC500/2020
 C241T C1059T ATG1431- C3037T C6730T C14408T A23403G G25563T G29140T

EPI_ISL_444618
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC501/2020
 C241T C1059T C1191T C3037T C14408T A23403G G25563T

EPI_ISL_444619
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC502/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C25571T G29540A

EPI_ISL_444620
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC503/2020
 C241T C1059T C3037T C14408T G15168A C19145T A23403G G25563T

EPI_ISL_444621
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC504/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444622
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC505/2020
 C241T C1059T C3037T G6352A C14408T A23403G C25463T G25563T

EPI_ISL_444623
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC506/2020
 C241T C1059T C3037T C8118T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444624
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC507/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444625
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC508/2020
 C241T C3037T C14408T C18877T A23403G G25563T G25726T

EPI_ISL_444626
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC509/2020
 C241T C3037T C14408T T15348A A23403G T27299C GGG28881AAC T29148C

EPI_ISL_444627
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC510/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444628
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC511/2020
 C241T C1059T C3037T C11916T C14408T C19367T A23403G G25563T

EPI_ISL_444629
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC512/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444630
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC513/2020
 C241T C1059T C3037T C4878T C8956T C14408T A23403G G25563T

EPI_ISL_444631
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC514/2020
 C241T G2231T C3037T C14408T A23403G A25505C GGG28881AAC

EPI_ISL_444632
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC515/2020
 C8782T T10771C T13147C C17747T A17858G C18060T T28144C

EPI_ISL_444633
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC516/2020
 C241T C1059T C3037T C14408T A23403G C23683T G25563T

EPI_ISL_444634
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC517/2020
 C241T C1059T C3037T C5907T C11916T C14408T A23403G G25563T

EPI_ISL_444635
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC518/2020
 C241T C1059T C3037T C11514T C14408T A23403G G25563T A28841G C29421T

EPI_ISL_444636
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC519/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G28878T G29540A

EPI_ISL_444637
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC520/2020
 T8704C C8782T T10771C C17747T A17858G C18060T T28144C A28483G

EPI_ISL_444638
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC521/2020
 C241T C1059T C3037T G4720A C14408T A23403G G25563T C28253T

EPI_ISL_444639
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC522/2020
 C241T C1059T C3037T C14408T A23403G G25563T T26094C

EPI_ISL_444640
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC523/2020
 C241T C1059T C3037T C11833T C14408T A23403G G25563T T28516C

EPI_ISL_444641
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC524/2020
 C241T C1059T C3037T C8660T C14408T A23403G G25563T

EPI_ISL_444642
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC525/2020
 C241T C1059T C3037T C14408T C21855T A23403G G25563T T28215G T28688C A29282G

EPI_ISL_444650
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC533/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25617A T27499C

EPI_ISL_444652
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC535/2020
 C2676T C8782T A22606T G24410C T28144C G28878A G29742A

EPI_ISL_444653
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC536/2020
 C241T C1059T C3037T C14408T G17602A A23403G G25563T T29765C

EPI_ISL_444654
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC537/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_444655
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NJ-NYUMC538/2020
 C241T C1059T C3037T C10851T C14408T G20170T A23403G G25526T G25563T

EPI_ISL_444656
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC539/2020
 C241T C3037T C14408T A23403G

EPI_ISL_444657
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC540/2020
 C241T C1059T C3037T C14408T A23403G G25563T G25784T

EPI_ISL_444658
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC541/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444659
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC542/2020
 C241T C1059T C3037T T12283C C14408T C16260T A23403G G25563T C28821A

EPI_ISL_444660
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC543/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_444661
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC544/2020
 C241T C1059T C1917T C3037T C8655T C14408T C16393T A23403G G25563T G28899A

EPI_ISL_444664
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC547/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29440A G29540A

EPI_ISL_444665
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC548/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444666
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC549/2020
 C241T C1059T C3037T C12488T C14408T A23403G G25563T C29421T G29425A

EPI_ISL_444667
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC550/2020
 C241T C1059T C3037T C11003T C11919T C14408T C21575T A23403G G25563T

EPI_ISL_444668
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC551/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444670
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NJ-NYUMC553/2020
 C241T C1059T C3037T C10851T C14408T G20170T A23403G G25526T G25563T

EPI_ISL_444671
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC554/2020
 C241T C1059T C3037T C14408T C16887T A20755C A23403G G25563T

EPI_ISL_444675
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC558/2020
 C241T C1059T C3037T C10626T C11916T C14408T C19718T A23403G G25563T

EPI_ISL_444678
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC561/2020
 C241T C1059T C3037T C12756T C14408T A23403G G25563T

EPI_ISL_444679
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC562/2020
 C157T C241T C1059T C3037T C14408T G17331T A23403G C25463T G25563T

EPI_ISL_444680
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC563/2020
 C241T C3037T C14408T A20268G G20893T A23403G C24863T

EPI_ISL_444681
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC564/2020
 C241T C1059T C3037T C14408T C17678T C19145T A23403G C25463T G25563T

EPI_ISL_444682
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC565/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T C24442T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_444683
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC566/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C28863T G29540A

EPI_ISL_444684
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC567/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_444685
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC568/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444686
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC569/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444687
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC570/2020
 C241T C1059T C3037T C6926T C11916T C14408T C17678T C18998T A23403G G25563T G29540A

EPI_ISL_444688
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC571/2020
 C241T C920T C1059T C3037T C14408T A23403G G25563T C29675T

EPI_ISL_444690
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC573/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_444691
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC574/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29541T

EPI_ISL_444692
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC575/2020
 C241T C3037T C14408T A23403G G25644T GGG28881AAC

EPI_ISL_444693
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC576/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444694
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC577/2020
 C241T C1059T G1181T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444695
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC578/2020
 C241T C1059T C3037T G3729A C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444696
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC579/2020
 C241T C1059T C3037T C11674T C14408T A23403G G25563T

EPI_ISL_444697
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC580/2020
 C241T C3037T C14408T A23403G C26892T GGG28881AAC

EPI_ISL_444698
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC581/2020
 C241T C1059T C3037T C14408T C20429T A23403G C25463T G25563T

EPI_ISL_444699
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC582/2020
 C241T C1059T C3037T C10319T C14408T C19170T A23403G G25563T C27964T

EPI_ISL_444700
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC583/2020
 C241T C1059T C3037T C5310T C14408T A23403G G25563T

EPI_ISL_444701
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC584/2020
 C241T C1059T C3037T A7240G C14408T A23403G G25563T

EPI_ISL_444702
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC585/2020
 C241T C1059T C1314T C3037T C14408T G21941T A23403G G25563T T28823C

EPI_ISL_444703
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC586/2020
 G199T C241T C1059T C3037T G11417T C14408T A23403G G25563T A29275G

EPI_ISL_444704
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC587/2020
 C241T C1059T C3037T C14408T C22712T A23403G G25563T C26873T

EPI_ISL_444705
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC588/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444765
 2020-03-30 2020-05-14
 United States hCoV-19/USA/NY-NYUMC648/2020
 C241T C1059T C3037T G3251T C14408T A23403G G25563T

EPI_ISL_444903
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-782/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444904
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-785/2020
 C241T C3037T C7834T C14408T A23403G G23868T

EPI_ISL_444905
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-787/2020
 C241T C3037T C7834T C14408T A23403G C28311T

EPI_ISL_444906
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-789/2020
 C241T C1059T C3037T TGC9855- C14408T G15672T C15842A C19903T A23403G G25563T

EPI_ISL_444910
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-795/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444911
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-797/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_444918
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-809/2020
 C241T C3037T C7834T T9519C C14408T C18877T C19660A A23403G

EPI_ISL_444920
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-812/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_444921
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-815/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444926
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-828/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_444927
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-831/2020
 C241T C1059T C3037T C12781T C14408T C15842A G22103C A23403G G25563T

EPI_ISL_444928
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-832/2020
 C241T C1059T G2945T C3037T T8788C C14408T A23403G G25563T G26951A G29474T

EPI_ISL_444929
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-833/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444937
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-846/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444938
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-847/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444939
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-848/2020
 C241T C3037T C7834T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_444940
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-849/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444948
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-866/2020
 C241T C1059T C3037T C12781T C14408T C15842A A23403G A23975G G25563T

EPI_ISL_444949
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-867/2020
 C241T C1059T C3037T C12781T C14408T C15842A A23403G A23975G G25563T C25854T

EPI_ISL_444950
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-868/2020
 C241T C1059T C3037T C12781T C14408T C15842A G22103C A23403G G25563T

EPI_ISL_444952
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-876/2020
 C218T C241T C1059T C1302T C2062T C3037T G11083T C14408T G22484T A23403G G25563T

EPI_ISL_444955
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-885/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_444957
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-888/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_444961
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-894/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_444963
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-896/2020
 C241T C1059T C3037T C6539T C14408T A23403G G25563T

EPI_ISL_444965
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-902/2020
 C241T C1059T C1302T C3037T C7029T C14408T A23403G G25563T G27147T G28202T

EPI_ISL_444966
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-904/2020
 C241T C1059T C3037T C14408T T21976C A23403G G25563T G29254T

EPI_ISL_444967
 2020-03-30 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-905/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_445115
 2020-03-30 2020-05-15
 United States hCoV-19/USA/CA-SR0132/2020
 C241T C1059T C3037T C6629T C14408T C23277T A23403G G25563T

EPI_ISL_445180 MT474136
 2020-03-30 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1132/2020
 AT1- C241T C1059T G1685A A2018G C3037T C14408T G17149A A23403G G25563T

EPI_ISL_445225
 2020-03-30 2020-05-15
 Sweden hCoV-19/Sweden/20-06653/2020
 C241T C1059T C3037T C14408T C21156T A23403G G24368T G25563T

EPI_ISL_445337
 2020-03-30 2020-05-15
 Chile hCoV-19/Chile/Valparaiso_5/2020
 A1GGTCAACAACACAGTTTATGATCCTTTGCAACCTGAA -4AGAATCA GGT7CAA T76W T78K C241T C1059T C3037T C6033M T10339C C14408T A23403G G25563T G29861A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_445372
 2020-03-30 2020-05-15
 Chile hCoV-19/Chile/Punta_Arenas_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447120
 2020-03-30 2020-05-16
 Belgium hCoV-19/Belgium/ULG-6839/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_447124
 2020-03-30 2020-05-16
 Belgium hCoV-19/Belgium/ULG-9536/2020
 C241T C1884T C3037T C14408T A23403G C28045G

EPI_ISL_447148
 2020-03-30 2020-05-16
 Belgium hCoV-19/Belgium/ULG-10151/2020
 C241T C3037T C5175T T11638C C14408T A23403G GGG28881AAC C29708T

EPI_ISL_447385
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/2047772/2020
 C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447386
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/2047749/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G A23691C G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447387
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/2047738/2020
 C241T C1059T C3037T G7936T C11916T A13500G C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447441
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/13075914/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447442
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/13075882/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447443
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/13075879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC G29017T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_447444
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/13075832/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C29013T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447445
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/13075790/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447446
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/13075788/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447448
 2020-03-30 2020-05-17
 Israel hCoV-19/Israel/13075735/2020
 C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447506
 2020-03-30 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6402T C12974T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447556
 2020-03-30 2020-05-17
 India hCoV-19/India/CCMB_J021/2020
 ATTAAAGGTTTATACCT1- C6312A G11083T C13730T A21792T C23929T C28311T C29722T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_447557
 2020-03-30 2020-05-17
 India hCoV-19/India/CCMB_J009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447558
 2020-03-30 2020-05-17
 India hCoV-19/India/CCMB_J014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A1381G C6312A C13730T C23929T C28311T

EPI_ISL_447620
 2020-03-30 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU26/2020
 C241T C3037T C6664T G12514T C14408T A23403G GGG28881AAC G29690T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_447750
 2020-03-30 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T G701T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447752
 2020-03-30 2020-05-18
 Colombia hCoV-19/Colombia/GUR-0900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T GGTCATGTTATG509- G521A T523G C3037T C14408T G15910T A20268G G22319T A23403G AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_450394
 2020-03-30 2020-05-21
 United States hCoV-19/USA/NY-NYUMC677/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450396
 2020-03-30 2020-05-21
 United States hCoV-19/USA/NY-NYUMC679/2020
 C241T C1059T C3037T C10889T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_450397
 2020-03-30 2020-05-21
 United States hCoV-19/USA/NY-NYUMC680/2020
 C241T C1059T C3037T C5310T C14408T A23403G G25563T

EPI_ISL_450398
 2020-03-30 2020-05-21
 United States hCoV-19/USA/NY-NYUMC681/2020
 C241T C1059T C3037T A3889G C6762T C14408T A23403G G25563T

EPI_ISL_450399
 2020-03-30 2020-05-21
 United States hCoV-19/USA/NJ-NYUMC682/2020
 G11083T C14805T T17247C C25658T G26144T

EPI_ISL_450528
 2020-03-30 2020-05-21
 Poland hCoV-19/Poland/1110540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3037T C14408T C21707T A23403G CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_450635 MT509702
 2020-03-30 2020-05-21
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20356/2020
 C241T C1059T C3037T C9891T C14408T A23403G G25563T C29627T

EPI_ISL_450730
 2020-03-30 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C184/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_450753
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_450754
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A38R C241T C1059T C3037T C14408T T19527C A23403G G25563T C27964T C28099T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_450755
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-285/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T C20987T A23403G G25563T A27821G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_450759
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T C17747T A17858G C18060T T28144C G28845A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_450760
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-291/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_450761
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-292/2020
 ATTA1- C8782T C12924T C17747T A17858G C18060T A24694T T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_450762
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_450764
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-296/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T A23403G G25563T T27504A A29865G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_450766
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-299/2020
 AT1-G C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_450767
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-300/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_450768
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38C C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_450771
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-310/2020
 AT1-G C8782T C17747T A17858G C18060T A24694T T28144C G28812T AAAAAAAAAAAAAAAA29888T

EPI_ISL_450772
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1059T C3037T G11083T C11224T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_450773
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T T28144C G28878A G29742A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_450774
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T G14350T C17747T A17858G C18060T A24694T T28144C G28812T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_450775
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_450776
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-318/2020
 A1- C241T C1059T C2644T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_450777
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A2480G C2558T G11083T C14805T G18028T G26144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_450778
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A2480G C2558T G11083T C14805T G26144T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_450779
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T G11083T C14805T G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_450780
 2020-03-30 2020-05-22
 United States hCoV-19/USA/MN-MDH-322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_451108
 2020-03-30 2020-05-23
 Australia hCoV-19/Australia/SAP070/2020
 C241T C2416T C3037T C14408T C22033A A23403G G25563T

EPI_ISL_451189
 2020-03-30 2020-05-23
 Uganda hCoV-19/Uganda/UG007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G10097A C14408T A22466G A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451190
 2020-03-30 2020-05-23
 Uganda hCoV-19/Uganda/UG008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC T29845- GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_451192
 2020-03-30 2020-05-23
 Uganda hCoV-19/Uganda/UG010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_451193
 2020-03-30 2020-05-23
 Uganda hCoV-19/Uganda/UG011/2020
 ATTAA1- C884T G1397A G8653T G11083T A19073G G27915T T28688C C29077T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_451797 LR824360
 2020-03-30 2020-05-25
 Switzerland 101130
 C241T C3037T C3373A C6016Y C14408T T22516W G23401K A23403G G24040A C25378Y GGG28881AAC G29422T

EPI_ISL_451798 LR824358
 2020-03-30 2020-05-25
 Switzerland 101131
 C241T C398Y C3037T C14408T C15324T A23403G C25513T T26726C

EPI_ISL_451799 LR824363
 2020-03-30 2020-05-25
 Switzerland 101132
 C241T C1059T C3037T A3116G C14408T C22347S T22516W A23403G G25563T C28472T

EPI_ISL_451800 LR824361
 2020-03-30 2020-05-25
 Switzerland 101133
 C241T C1059T C3037T A3116G C14408T A19298W A19339W G21185R A23403G G25563T

EPI_ISL_451802 LR824364
 2020-03-30 2020-05-25
 Switzerland 101135
 C241T C311Y C1059T C2507Y C3037T A5257W C5348T C14408T G21334K G21558R C22347S A22492R A23403G G25563T G27670R

EPI_ISL_451803 LR824367
 2020-03-30 2020-05-25
 Switzerland 101136
 C241T C1059T C3037T C14408T T18513C C22347S A23403G G25563T

EPI_ISL_452044
 2020-03-30 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-176/2020
 C241T C1059T C1302T C3037T C14408T G21508A A23403G G25563T

EPI_ISL_452142
 2020-03-30 2020-05-26
 Belgium hCoV-19/Belgium/20A37/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_452206
 2020-03-30 2020-05-27
 India hCoV-19/India/NIV-6311/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C6312A G11083T C13730T C19524T C23929T G25647T GCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCTT26350A C28311T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452306
 2020-03-30 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20432/2020
 C241T C1059T C3037T C8541T C14408T A23403G G25563T

EPI_ISL_453924
 2020-03-30 2020-05-28
 Portugal hCoV-19/Portugal/PT0210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C8318A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453925
 2020-03-30 2020-05-28
 Portugal hCoV-19/Portugal/PT0211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8727T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453929
 2020-03-30 2020-05-28
 Portugal hCoV-19/Portugal/PT0215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC C28892T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453931
 2020-03-30 2020-05-28
 Portugal hCoV-19/Portugal/PT0217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C1346T C3037T C3140T C14408T C22450T A23403G G24077T T27206C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454209
 2020-03-30 2020-05-28
 Portugal hCoV-19/Portugal/PT0485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G T24194C C26058T A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454210
 2020-03-30 2020-05-28
 Portugal hCoV-19/Portugal/PT0486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A339G G2494T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454315
 2020-03-30 2020-05-28
 Portugal hCoV-19/Portugal/PT0592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7417T C14408T A20268G A23403G G29734C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454353
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL62/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454354
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL63/2020
 C241T C1059T T1477C C3037T C14408T C19185T A23403G G25563T G27217A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454357
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL68/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G28300T G29540A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454358
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL70/2020
 C241T C1059T C3037T C14408T A21137G A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454360
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL74/2020
 C241T C2416T C3037T C14408T A23403G C25463T G25563T G26233T C27881T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454362
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL76/2020
 C241T T1918C C3037T C14408T C18877T C23230T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454364
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL78/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26690T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454365
 2020-03-30 2020-05-28
 United States hCoV-19/USA/PA-MGEL80/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454542
 2020-03-30 2020-05-28
 India hCoV-19/India/NIV-6315/2020
 C6312A G11083T C13730T C19524T C23929T G25647T C28311T G29830T

EPI_ISL_454606
 2020-03-30 2020-05-28
 Croatia hCoV-19/Croatia/I7-S21new/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_454646 MT532557
 2020-03-30 2020-05-28
 United States SARS-CoV-2/human/USA/TX-CDC-0406/2020
 C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T G29543T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_455165
 2020-03-30 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T18083C A20255G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455253
 2020-03-30 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455254
 2020-03-30 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G29734C G29751T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455361 MW008585
 2020-03-30 2020-05-29
 United States SARS-CoV-2/human/USA/GA-EHC-115L/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C3157T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_455566
 2020-03-30 2020-05-31
 Croatia hCoV-19/Croatia/17-S7new/2020
 C241T C3037T C3177T G11761T C14408T C18129T A23403G G28300T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_455643
 2020-03-30 2020-06-01
 India hCoV-19/India/S13/2020
 C241T C3037T C14408T A23403G

EPI_ISL_455706
 2020-03-30 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_3629/2020
 C241T C3037T C14408T G18021T A23403G C26028T GGG28881AAC

EPI_ISL_455984
 2020-03-30 2020-06-01
 United States hCoV-19/USA/LA-EVTL141/2020
 C241T C1059T C1943T C3037T C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456071
 2020-03-30 2020-06-01
 Brazil hCoV-19/Brazil/RJ-899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13385A C14408T C21292A A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456276
 2020-03-30 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1833/2020
 C8782T C17747T A17858G C18060T C23430T T28144C

EPI_ISL_456284
 2020-03-30 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1856/2020
 C3096T C12781T G13627T C14805T C15540T G17944T G26144T A28338G

EPI_ISL_456288
 2020-03-30 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1862/2020
 C241T C1059T C14408T C24034T

EPI_ISL_456289
 2020-03-30 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1863/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456290
 2020-03-30 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1864/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456319
 2020-03-30 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1949/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_456898
 2020-03-30 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB2778/2020
 C241T C3037T C14408T A23403G

EPI_ISL_456956
 2020-03-30 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5052/2020
 C241T C3037T C14408T A23403G C23422T T23849C C29686T

EPI_ISL_457009
 2020-03-30 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5368/2020
 C241T C3037T C14408T C20823T A23403G C23422T T23849C C29686T

EPI_ISL_457011
 2020-03-30 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5373/2020
 C241T C1059T C3037T C4551T C14408T C17949T T18351C G19684T A23403G G25563T

EPI_ISL_457176
 2020-03-30 2020-06-02
 United Kingdom hCoV-19/England/EXET-135EAD/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457675
 2020-03-30 2020-06-02
 United Kingdom hCoV-19/England/SHEF-D07AA/2020
 G11083T C14805T G16564T G20024A C23854T G26144T

EPI_ISL_457787 MT646116
 2020-03-30 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00158/2020
 C241T C629T C1059T C3037T C14408T A23403G C23453T G25563T G28380K

EPI_ISL_457818 MT646089
 2020-03-30 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00129/2020
 C241T C1059T C3037T C14408T C17502T A23403G G25563T

EPI_ISL_457821 MT646092
 2020-03-30 2020-06-02
 United States SARS-CoV-2/human/USA/MD-HP00133/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_458217
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458218
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1142T C3037T C14408T C15324T T17811C A23403G G24770T C27434T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458219
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6720T C7834T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458220
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A29521T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458221
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4158T G10098A G11083T C11580T C13620T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458222
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458223
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C23275A A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458224
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T C25466T GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458225
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C13511T G17122T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458226
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17014T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458227
 2020-03-30 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0330257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C G22017T A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459886
 2020-03-30 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-035/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T T29848A A29850T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_459887
 2020-03-30 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-036/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T A12103G C14408T C18998T A23403G G25563T G29540A ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850T

EPI_ISL_459888
 2020-03-30 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-037/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C10369T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459889
 2020-03-30 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-038/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_459891
 2020-03-30 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-041/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C10188T C14408T A23403G C24382T T24982C G25563T C27964T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856CT

EPI_ISL_459892
 2020-03-30 2020-06-04
 Canada hCoV-19/Canada/ON_QGLO-042/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459956
 2020-03-30 2020-06-05
 Malaysia hCoV-19/Malaysia/IMR_WC9127/2020
 AT1TTAATCAGGCAGTCCTGTTTCTTCCTTATTGCCCAG A4G G7T TTTA9CCCC -14CCCAAGGCTACACAGGATAGATTAAGA C6312A C9391T G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_460004
 2020-03-30 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20465/2020
 C241T C3037T C14408T T16926C C18877T A23403G G25563T

EPI_ISL_460691
 2020-03-30 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A T12619C C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460704
 2020-03-30 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T A10323G G12550A C14408T A20268G C20740A A23403G A27691G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460792
 2020-03-30 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T C29738T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460793
 2020-03-30 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2260T C3037T C11339T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460794
 2020-03-30 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461286
 2020-03-30 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T T13006C C14408T G19684T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461425 MT683393
 2020-03-30 2020-06-06
 United States SARS-CoV-2/human/USA/ID-UW-4595/2020
 ATTAAAG1- G8T T11G C241T T833C C1059T C3037T C14408T C17676T A23403G G25563T C27964T

EPI_ISL_461710
 2020-03-30 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB375/2020
 C241T C3037T C14408T C18395T A23403G C25433T

EPI_ISL_462149
 2020-03-30 2020-06-07
 Russia hCoV-19/Russia/CRIE160583/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1758T C3037T C14408T A23403G -27331T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_462158
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/RM-0330304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A23989G C25603T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462159
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/VDLM-0330305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G521T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462160
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/DWW-0330306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1738T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462161
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/DJS-0330307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G C25831T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462182
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/CGR-0330328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2305T T5344C G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462183
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/VBWF-0330329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C11074T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462184
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/HMJ-0330330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C G20477T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462185
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/SRL-0330331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14230T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462186
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/CL-0330332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462189
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/BA-0330335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T A28521G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462201
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/BN-0330347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A17207G A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462205
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/DNM-0330351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462212
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/TA-0330358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T23287C A23403G A23870G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462217
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/MFM-0330363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462219
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/PBT-0330365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C14408T C21590T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462221
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/SAA-0330367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T G9130T C14408T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462238
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/LMA-0330384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462239
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/DLM-0330385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1213T C3037T A5541T G7798T A13947T C14408T A23403G C26013T G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462241
 2020-03-30 2020-06-08
 Belgium hCoV-19/Belgium/VDA-0330387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462475
 2020-03-30 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7377/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T C15324T C23179T A23403G C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_462975
 2020-03-30 2020-06-08
 United States hCoV-19/USA/WY-WYPHL-00084/2020
 AT1- C241T C1059T C3037T C11916T C14408T C16611T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_462979
 2020-03-30 2020-06-08
 United States hCoV-19/USA/WY-WYPHL-00088/2020
 A1- C241T C1059T C3037T G10870T A12446G C14408T A23403G G25563T G25784T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_463003 MT499217
 2020-03-30 2020-05-20
 Tunisia SARS-CoV-2/human/TUN/COV1339/2020
 TTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC2- T41C C241T C2113T C3037T C7765T A8658G G8781A C14408T C16178T C17690T C18877T G19525T C22210T G22424A T22435C A22503G A23403G G25563T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_463740
 2020-03-30 2020-06-10
 United Arab Emirates hCoV-19/United Arab Emirates/P1/2020
 T490A C3177T C6040T C8782T C8950T G12478A A18222G T18736C T19713C C22350T C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_464143
 2020-03-30 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_32/2020
 T8022G A8026T G10097A C13536T C14408T T20891G A23403G C23731T AG24389CC C25169T GGG28881AAC

EPI_ISL_465877
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20140008604/2020
 C241T C3037T C6091Y C14408T A23403G C25350T

EPI_ISL_465881
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20140060204/2020
 G1440A G2891A C7011T C10198T G12202T G25593C

EPI_ISL_465884
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20140064404/2020
 A2480G C2558T G11083T C14805T G26144T C29409T

EPI_ISL_465885
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20140064604/2020
 C241T C3037T C14408T C22326T A23403G G27281K GGG28881AAC

EPI_ISL_465887
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20140068504/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G T25485C G25563T

EPI_ISL_465895
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142001904/2020
 A187G C241T T844A C3037T A5650G C14408T C14741T A21222G A23403G

EPI_ISL_465896
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142003004/2020
 C241T C313T C3037T C14408T A23403G C27128T GGG28881AAC

EPI_ISL_465904
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142005504/2020
 C241T C3037T C7398S G10887K C14408T A23403G C26111T GGG28881AAC G29262T

EPI_ISL_465906
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142006104/2020
 G149K C241T C3037T C10319Y C14408T G21204T C21440Y A23403G GGG28881AAC

EPI_ISL_465921
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142014904/2020
 T7876A G26144T

EPI_ISL_465923
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142016604/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_465936
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142025204/2020
 C241T C3037T C5526Y A7636R C14408T A23403G GGG28881AAC

EPI_ISL_465940
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142027104/2020
 C241T C3037T C5240T C14408T A23403G G27857T GGG28881AAC AA29891RM

EPI_ISL_465941
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142027704/2020
 C14805T G24236T G25183T G26144T G28881A G29692T A29871G

EPI_ISL_465943
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142078104/2020
 C241T C3037T T9640Y G10097A C14408T A23403G C23731T G28198T G28580T GGG28881AAC G29009K

EPI_ISL_465944
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142078204/2020
 C241T C3037T G12721K C14408T A23403G G27715K GGG28881AAC

EPI_ISL_465946
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142084004/2020
 A2480G C2558T C7011T G11405A C14805T G26144T C28869T

EPI_ISL_465962
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20142131104/2020
 C241T C2675A C3037T C14408T A23403G GGG28881AAC A29871T

EPI_ISL_465976
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20144011304/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_465977
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20144011404/2020
 C241T C3037T C14408T A23403G C24822Y GGG28881AAC

EPI_ISL_465992
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20144022604/2020
 C241T C3037T T7792C C14408T G21724T A23403G GGG28881AAC C29738T A29871T

EPI_ISL_466120
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20149006704/2020
 G219A C241T C1059T C1968T C3037T C14408T A23403G C23638T G25563T G29705T

EPI_ISL_466124
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20149007104/2020
 C241T C346T C3037T C14408T A20268G A23403G

EPI_ISL_466142
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20149009004/2020
 C1514T A2480G C2558T A4539W C6195Y G10112K T12803K C14805T G18310K A19904G C20842Y C22730M C25561Y G26144T C28059Y G29140T

EPI_ISL_466145
 2020-03-30 2020-06-11
 United Kingdom hCoV-19/England/20149009304/2020
 C241T C3037T C8139Y C14408T C17010T C19961T A23403G GGG28881AAC C29281T

EPI_ISL_467953
 2020-03-30 2020-06-16
 United States hCoV-19/USA/CA-SR0419/2020
 C241T C3037T C14408T A20268G A23403G T24076C C27630T C28854T

EPI_ISL_467966
 2020-03-30 2020-06-16
 United States hCoV-19/USA/CA-SR0439/2020
 C241T C1059T T1211G C3037T C14408T G15265A A23403G G24985T G25563T C27964T

EPI_ISL_467971
 2020-03-30 2020-06-16
 United States hCoV-19/USA/CA-SR0447/2020
 C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_467975
 2020-03-30 2020-06-16
 United States hCoV-19/USA/CA-SR0452/2020
 C241T C3037T C14408T A23403G C24374T C25350T C27503T

EPI_ISL_467979
 2020-03-30 2020-06-16
 United States hCoV-19/USA/CA-SR0457/2020
 C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C24384T C25350T

EPI_ISL_467983
 2020-03-30 2020-06-16
 United States hCoV-19/USA/CA-SR0461/2020
 C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_468031
 2020-03-30 2020-06-16
 Australia hCoV-19/Australia/SAP203/2020
 ATTA1- C241T G1589A C3037T A10861G C14408T A23403G G25429T G29474T

EPI_ISL_468036
 2020-03-30 2020-06-16
 Australia hCoV-19/Australia/SAP206/2020
 C241T C2940T C3037T C14408T A23403G A26178T

EPI_ISL_468411 MT628147
 2020-03-30 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1445/2020
 C241T C313T C3037T A11348G C14408T A23403G GGG28881AAC

EPI_ISL_468413 MT628148
 2020-03-30 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1447/2020
 C241T C1059Y C3037T C10319Y G11083K C14408T G20679K A23403G G25563K C25916Y C26499Y C27964Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468449 MT628177
 2020-03-30 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1502/2020
 AT1- C241T C3037T C7851Y C14408T G14718R A23403G GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_468497 MT628221
 2020-03-30 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C1238Y C1887T C3037T C14408T A17615G A23403G T24451Y G25563T C29614T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468617 MT631808
 2020-03-30 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_468618 MT631809
 2020-03-30 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1678/2020
 C241T C3037T C14408T C22480Y A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_469049
 2020-03-30 2020-06-17
 Morocco hCoV-19/Morocco/Mor-CoV-2/2020
 C241T C3037T C14408T C18877T A23403G G25563T G29315C

EPI_ISL_469052
 2020-03-30 2020-06-17
 Morocco hCoV-19/Morocco/Mor-CoV-4/2020
 C241T C1059T T1666C C3037T C14408T A23403G G25563T

EPI_ISL_469053
 2020-03-30 2020-06-17
 Morocco hCoV-19/Morocco/Mor-CoV-5/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_469749
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2189T C2416T C3037T C14408T C14786T G17761K G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469930
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-172202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469935
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-172378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T ATG1605- C12710T C22858T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469943
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-1721E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A21405T A23403G C23701T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469946
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-17224E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C593T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469957
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-1722C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22414T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469961
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-172387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T G14055T A14601G C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469963
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-1720DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469982
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-172396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469985
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-172150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1545T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469991
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-17217E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C8626T C12710T C27247T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470005
 2020-03-30 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-172053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471265
 2020-03-30 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6884T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_472538
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15C7B4/2020
 ATTAAAGGTT1- G1820A A2480G C2558T T8599C G11083T C14805T G16236T G26144T C28344T

EPI_ISL_475111
 2020-03-30 2020-06-23
 Sweden hCoV-19/Sweden/20-08677/2020
 C241T C3037T C12400T C13458T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_475112
 2020-03-30 2020-06-23
 Sweden hCoV-19/Sweden/20-08678/2020
 C241T C3037T C12400T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_475113
 2020-03-30 2020-06-23
 Sweden hCoV-19/Sweden/20-08679/2020
 C241T C3037T C12400T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_475114
 2020-03-30 2020-06-23
 Sweden hCoV-19/Sweden/20-08725/2020
 C241T C3037T G5200A C14195A C14408T A23403G

EPI_ISL_475115
 2020-03-30 2020-06-23
 Sweden hCoV-19/Sweden/20-50547/2020
 C241T C3037T C12469T C14408T T20631C A23403G C27046T GGG28881AAC

EPI_ISL_475144
 2020-03-30 2020-06-23
 Sweden hCoV-19/Sweden/20-50518/2020
 C241T C1059T A1399G C3037T G7936T C14408T G20002T A23403G G25563T

EPI_ISL_475145
 2020-03-30 2020-06-23
 Sweden hCoV-19/Sweden/20-50529/2020
 C241T C3037T G3689A C14408T C23086T A23403G C27046T GGG28881AAC

EPI_ISL_475282
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0D97/2020
 C241T C3037T C9857T C14408T A23403G A26530G

EPI_ISL_475283
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0DA6/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_475284
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0DB5/2020
 C3787T C6027T A10236G C11074T G11083T C14805T T17247C C17750T C24130T G24386T G25563T G26144T

EPI_ISL_475286
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0DD3/2020
 ATG1605-

EPI_ISL_475287
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0DE2/2020
 C241T C3037T C5340T A9634T G11083T C14408T A23403G G25429T

EPI_ISL_475288
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0DF1/2020
 C241T C3037T C9857T C14408T A23403G A26530G

EPI_ISL_475291
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0E2B/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_475292
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0E3A/2020
 C1457T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_475293
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0E49/2020
 C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_475296
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0E76/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_475298
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0E94/2020
 C241T C3037T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_475300
 2020-03-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0EB2/2020
 C241T A1461G C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC

EPI_ISL_475612
 2020-03-30 2020-06-23
 United States hCoV-19/USA/CA-CSMC134/2020
 C337T T490A C3177T C6040T C8782T C8950T C12005G G12478A C13384T T18736C G18826A T23652C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_475653
 2020-03-30 2020-06-23
 United States hCoV-19/USA/CA-CSMC41/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_475781
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T C14408T A23403G G25563T C29743T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475782
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10688T C14408T A23403G C23802T G28122T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475783
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475784
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G24883R G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475785
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475786
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475787
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9530K C26088T T27801C T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475790
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21304A G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475791
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9165T A10874G C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475821
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T A11839G C14408T C14676Y C16575T C18348Y T19839C T21198Y A23403G C28253Y C28603Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475891
 2020-03-30 2020-06-25
 Austria hCoV-19/Austria/CeMM0519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1567T C3037T A13510R C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476069
 2020-03-30 2020-06-25
 Hungary hCoV-19/Hungary/UD-5394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C4752T C14408T A23403G C26326T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476078
 2020-03-30 2020-06-25
 Hungary hCoV-19/Hungary/US-636w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477014
 2020-03-30 2020-06-28
 Ecuador hCoV-19/Ecuador/USFQ-004/2020
 C241T C3037T C14408T A23403G T26512C

EPI_ISL_477622
 2020-03-30 2020-06-29
 Hungary hCoV-19/Hungary/US-3761w/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6404T C8208T G13723T C14408T C15324T C19145T A23403G C29362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477676
 2020-03-30 2020-06-29
 United States hCoV-19/USA/CT-UW-2466/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TH C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_477677
 2020-03-30 2020-06-29
 United States hCoV-19/USA/CT-UW-2468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T A7558G C14408T A20003G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_477679
 2020-03-30 2020-06-29
 United States hCoV-19/USA/CT-UW-2487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C6286G C8290T C14408T C18877T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_477705
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2268/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_477707
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2276/2020
 AT1GA A31W C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_477708
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2280/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C8782T G11083T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_477709
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2281/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T G28632T TG29867AA C29870A -29904AAAAAAAAAAAAAA

EPI_ISL_477710
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2293/2020
 ATTAAA1- A31T C36T C241T A1842G C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_477711
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36Y C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_477712
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2320/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T G4975T C14408T G19388T A23403G G25523T G25563T T27869C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_477714
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2374/2020
 ATTAAAGGTT1- A31T AAC34TTT C241T G374A G659A C1059T C3037T C4980T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_477715
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31W C36T C241T C2416T C3037T C14408T A23403G G25563T C29870M AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_477716
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2386/2020
 ATTAAAGGTTTATACCTTCCCA1- A31T AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T -29904A

EPI_ISL_477717
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2521/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C8782T C10818T C14937T C17747T A17858G C18060T T28144C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_477718
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AAC34TTT C241T T833C C1059T G1264T C3037T C14408T A23403G G25563T C27964T A29866C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_477719
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2548/2020
 ATTAAA1- A31T C36T C8782T T15927G C17747T A17858G C18060T C26936T T28144C -29904AAAAAAAAAAAA

EPI_ISL_477720
 2020-03-30 2020-06-29
 United States hCoV-19/USA/WA-UW-2557/2020
 T3D A6- C36T C241T C1059T C3037T C14408T T17813C A23403G T24658C G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_478415
 2020-03-30 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6C3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G6358T G11083T C14805T C16220T G19999T G26144T C27532T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478622
 2020-03-30 2020-06-30
 United Kingdom hCoV-19/England/NORT-294EE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478632
 2020-03-30 2020-06-30
 United Kingdom hCoV-19/England/NORT-295147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479624
 2020-03-30 2020-06-30
 Russia hCoV-19/Russia/CRIE155506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T G14515A A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_479629
 2020-03-30 2020-07-01
 Canada hCoV-19/Canada/NB-213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479632
 2020-03-30 2020-07-01
 Canada hCoV-19/Canada/NB-216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2210T C3037T C3792T C6255T T6564C C14408T G18811A A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479633
 2020-03-30 2020-07-01
 Canada hCoV-19/Canada/NB-217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479643
 2020-03-30 2020-07-01
 Canada hCoV-19/Canada/NB-228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15732T T19143C A20268G A23403G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479996
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T G7133A C13011T C14408T C14599T A23403G C24642T G26730A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480014
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G C25688T C27684T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480015
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G4300T C14408T A23403G G25249T G25563C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480016
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480021
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C9430T G9652T C14408T G22199T A23403G G24197T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480022
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G26109T T26966A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480074
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_480075
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480076
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480077
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G T25488A C27923T GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480078
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G T25488A C27923T GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480079
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G T25488A GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480080
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G T25488A GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480108
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0443/2020
 ATTAAAGGTTTAT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480120
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480121
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480122
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480123
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T C16751A A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480124
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480196
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T GACGGTGCTTTACTT5810- C14408T A20268G G21097A A23403G G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480198
 2020-03-30 2020-07-01
 Japan hCoV-19/Japan/PG-0542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A20268G A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480303
 2020-03-30 2020-07-01
 Bulgaria hCoV-19/Bulgaria/23/2020
 C241T C1059T C1302T C3037T A3569G C14408T A23403G G25563T

EPI_ISL_480307
 2020-03-30 2020-07-01
 Bulgaria hCoV-19/Bulgaria/36/2020
 C241T C3037T G8371A C14408T C14877T A20268G A23403G T29765C

EPI_ISL_481656
 2020-03-30 2020-07-03
 Finland hCoV-19/Finland/30M6S2/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481657
 2020-03-30 2020-07-03
 Finland hCoV-19/Finland/30M75S3/2020
 C241T C1059T C1568T C3037T T8158C C14408T A23403G G24368T G25563T A29183G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481658
 2020-03-30 2020-07-03
 Finland hCoV-19/Finland/30M77S3/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481659
 2020-03-30 2020-07-03
 Finland hCoV-19/Finland/30M80S3/2020
 C241T C3037T C6401T C14408T C16952T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481661
 2020-03-30 2020-07-03
 Finland hCoV-19/Finland/30M88S2/2020
 C241T C1059T C3037T A6519C T6523A C14408T G15907T A23403G G24368T G25563T G27163T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481662
 2020-03-30 2020-07-03
 Finland hCoV-19/Finland/30MA7S2/2020
 C241T C3037T C6401T G7553A C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481663
 2020-03-30 2020-07-03
 Finland hCoV-19/Finland/30MBS2/2020
 C241T C1059T C3037T C12242A C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481747
 2020-03-30 2020-07-03
 Canada hCoV-19/Canada/NB_249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482309
 2020-03-30 2020-07-03
 United States hCoV-19/USA/OR-PROV-025/2020
 G11083T C14805T G26144T

EPI_ISL_482452
 2020-03-30 2020-07-03
 United States hCoV-19/USA/OR-PROV-217/2020
 C9474T G11083T C14805T T24892C G26144T

EPI_ISL_482466
 2020-03-30 2020-07-03
 United States hCoV-19/USA/OR-PROV-231/2020
 T11C A2581C G11083T C14805T G26144T

EPI_ISL_483201
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0524-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_483300
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0684-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T12955C C14408T C16762T A23403G G25563T

EPI_ISL_483313
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0704-SAN/2020
 ATTAAAGG1- C241T C1059T C3037T T12955C C14408T C16762T A23403G G25563T

EPI_ISL_483316
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0707-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_483318
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0711-SAN/2020
 C241T C1059T C3037T C6629T C14408T C23277T A23403G G25563T

EPI_ISL_483371
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0805-SAN/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_483372
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0806-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T T12955C C14408T C16762T A23403G G25563T

EPI_ISL_483373
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0809-SAN/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T G17014T A23403G G25563T

EPI_ISL_483374
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0810-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15842T C16762T A23403G G25563T

EPI_ISL_483375
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0812-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T G17014T A23403G G25563T

EPI_ISL_483377
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0815-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C1887T C3037T C14408T G21220T A23403G G25563T

EPI_ISL_483378
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0816-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G526T C1059T C3037T T3526C C14408T C16762T A23403G G25563T

EPI_ISL_483383
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0823-SAN/2020
 ATTA1- C241T C1059T C3037T C6629T C14408T C23277T A23403G G25563T

EPI_ISL_483425
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0939-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C401T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_483435
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0976-SAN/2020
 ATTAAAGGTT1- C241T C1059T C3037T T12955C C14408T C16762T A23403G G25563T

EPI_ISL_483436
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0977-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C11671T C14408T A23403G G25563T

EPI_ISL_483446
 2020-03-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0990-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C14408T C17104T A23403G G25563T

EPI_ISL_483551
 2020-03-30 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T G1126T C1342T G1397A G8653T G11083T C12005T C22938T C28093T T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483553
 2020-03-30 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G11230T T28144C G28167A G28878A G29742A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483711
 2020-03-30 2020-07-08
 Israel hCoV-19/Israel/n14285/2020
 C241T C1059T C3037T C5365T C14408T A20755C A23403G G25563T A28811G

EPI_ISL_484126
 2020-03-30 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265DF38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484152
 2020-03-30 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265E0E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484711
 2020-03-30 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7869T C14408T A23403G G25563T C27005T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485922
 2020-03-30 2020-07-10
 United States hCoV-19/USA/CT-UW-2469/2020
 ATTAAA1- AACC34TTTA A39T C241T C3037T C6285T C14408T C18877T A23403G C25452T G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_485923
 2020-03-30 2020-07-10
 United States hCoV-19/USA/CT-UW-2475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- C241T C1059T C3037T C14408T A23403G G25563T TG29867AR C29870A

EPI_ISL_485924
 2020-03-30 2020-07-10
 United States hCoV-19/USA/CT-UW-2481/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C4331T C6026T C14408T A23403G G25563T C28836T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485925
 2020-03-30 2020-07-10
 United States hCoV-19/USA/CT-UW-2488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCT1- C241T C3037T G10265A C14408T G22343T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_485981
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2304/2020
 ATTAAAGGTT1- C36T C8782T T17009C C17747T A17858G C18060T C23673T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485982
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2305/2020
 ATTAAAGGTTTA1- AAC34TTT C8782T C11020T C17747T A17858G C18060T G21255C C26013T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_485986
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2368/2020
 AT1GA A4T C36T C241T C1059T C3037T C10582T C14408T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_485988
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2377/2020
 ATT1-CC C5170T A6475C C8782T C16468T T17673C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_485989
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485994
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2526/2020
 A1G C8782T C17747T A17858G C18060T G21770T T27384C T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_485995
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2532/2020
 A1G A4G C36T C241T C1059T C3037T C14408T A23403G G24764T G25563T C29119T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485996
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_485997
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2540/2020
 ATTAAA1- C241T C1059T C3037T C11224T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485998
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2551/2020
 T2C A4T C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486000
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2565/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G C25096T G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486001
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T G5017T C7945T CC14407TT A23403G G25563T G29864A TG29867AA C29870A

EPI_ISL_486004
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2606/2020
 ATTAAAGGTTTATACCTT1- AAC34TTT C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486008
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2618/2020
 ATTAAAGGTTT1- C36T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_486012
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2665/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T T8883C TT8885AA C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_486013
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2670/2020
 ATTAAAG1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486017
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGA1- C8782T C17747T A17858G C18060T T28144C C28887T C29409T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_486018
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31W C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486020
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2730/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486021
 2020-03-30 2020-07-10
 United States hCoV-19/USA/WA-UW-2732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AACC34TTTH C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_486815
 2020-03-30 2020-07-10
 Russia hCoV-19/Russia/CRIE159560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486816
 2020-03-30 2020-07-10
 Russia hCoV-19/Russia/CRIE159875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C17745T A23403G A28043G G28727T GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486817
 2020-03-30 2020-07-10
 Russia hCoV-19/Russia/CRIE159932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486818
 2020-03-30 2020-07-10
 Russia hCoV-19/Russia/CRIE160277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A15192T A23403G GGG28881AAC G29527T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486819
 2020-03-30 2020-07-10
 Russia hCoV-19/Russia/CRIE160790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_487678
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3881G C14408T G17721R A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487802
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5907T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487865
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3598C C8917T C14408T C21575T C22329Y A23403G C24919T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488404
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C96T C241T C3037T C4113T G11083T C14408T G14857T C16887T A23403G A25575C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488459
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2837A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6606Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488469
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2832C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G6446T G11083T C14805T T17247C T25202K T25932A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488473
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2832EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T A2480G C2558T C4534Y G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488494
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2952EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27807Y G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488503
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-282E37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T C17439T A20268G A23403G T25202K C27920T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488521
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-295E04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12849A C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488548
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-283188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C340T C3037T C14408T A23403G G25437K C28706Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488551
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-295341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488556
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2831B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2869G C3037T C14408T G17278T A23403G GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488578
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2831C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T6691C G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488584
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-295271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488601
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-282F43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C18086T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488613
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-295208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488616
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2957BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4319R C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488619
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-295253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T A5608R G7393T A10323G G11083T C14805T T17247C G23876A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488627
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2830F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488635
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2951CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488655
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-283267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C556Y A1515G C9223T G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488671
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2836D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C3037T C14408T C16859T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488695
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-294F5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4300T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488704
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-295ED7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16726Y A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488706
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-295192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2820C C5869T G11083T C11866T A12103G C14805T T25202K A25968G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488713
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2831F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1340Y C3037T C11758Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488730
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-282FCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3764A C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488734
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-28348F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A21405T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488887
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G160T C241T A1610G C3037T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488912
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21575T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488926
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3881G C14408T A20465R A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488947
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A27660G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488955
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488964
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488985
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T G19009T A23403G C24213G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488997
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1111R C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489003
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417K C14408T C16289T T17394W CG21304AA G22927T A23403G G25429T C29679T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489015
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489026
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G G27214T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489033
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T G29212A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489039
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T C19113T T21752C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489060
 2020-03-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T CG21304AA A23403G G25429T C29679T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489994
 2020-03-30 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR-WC9185/2020
 ATTAAAGGTTTA1- G1467A C6312A G11083T C13730T A14226G T23926C C23929T A25576G C28311T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_491134
 2020-03-30 2020-07-16
 Oman hCoV-19/Oman/6991/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G4255T C14408T T18083C A20355G A23403G C25702T A26530G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_491917 MT776411
 2020-03-30 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6196T C14408T A23403G T26048C T27299C GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491918 MT776412
 2020-03-30 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491919 MT776413
 2020-03-30 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A C1926T G2891A C7011T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492129
 2020-03-30 2020-07-20
 Australia hCoV-19/Australia/SAP194/2020
 ATTA1- T1368C C6990T G11083T C14805T C20736T C23707T G26144T

EPI_ISL_492130
 2020-03-30 2020-07-20
 Australia hCoV-19/Australia/SAP197/2020
 ATTA1- C241T G1319A C3037T C8389T C11195T C14408T C21707T A23403G G25563T A25616G

EPI_ISL_492149
 2020-03-30 2020-07-20
 Australia hCoV-19/Australia/SAP384/2020
 ATTA1- C4540T C8782T T9477A C13584T C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_493207
 2020-03-30 2020-07-21
 Taiwan hCoV-19/Taiwan/NCKUH-014/2020
 ATTAAAGGTTTAT1- G11083T A13875G C14805T T17247C T18837C G26144T C27970G C29627T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873T

EPI_ISL_494286
 2020-03-30 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1687B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C16551Y A23403G GGG28881AAC AAAAAAAA29896-

EPI_ISL_495594
 2020-03-30 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S005725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495597
 2020-03-30 2020-07-23
 United States hCoV-19/USA/MN-MDH-1298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C6388T C8782T C17747T A17858G C18060T C21914T A24694T T28144C G28812T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_497811
 2020-03-30 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5230T C11339T C14408T C17010T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497821
 2020-03-30 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A12424G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498156
 2020-03-30 2020-07-26
 Colombia hCoV-19/Colombia/88712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498157
 2020-03-30 2020-07-26
 Colombia hCoV-19/Colombia/88859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498161
 2020-03-30 2020-07-27
 Colombia hCoV-19/Colombia/94411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T C29363T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498162
 2020-03-30 2020-07-27
 Colombia hCoV-19/Colombia/94679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T C26681T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501168
 2020-03-30 2020-07-30
 United States hCoV-19/USA/TX-GCID-192000159/2020
 A1G T3A C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T A29881G A29883G A29903-

EPI_ISL_501201
 2020-03-30 2020-07-31
 Malaysia hCoV-19/Malaysia/3133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6312A G11083T C13730T C15216T C19524T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501202
 2020-03-30 2020-07-31
 Malaysia hCoV-19/Malaysia/3145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- A30G G1111A C6312A T7621C G11083T C13730T C21627T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501203
 2020-03-30 2020-07-31
 Malaysia hCoV-19/Malaysia/3321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T7621C G11083T C13730T C23929T C28311T G29260C A29285T

EPI_ISL_501204
 2020-03-30 2020-07-31
 Malaysia hCoV-19/Malaysia/3479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C20759T A23403G C28253T GGG28881AAC T28978A

EPI_ISL_501205
 2020-03-30 2020-07-31
 Malaysia hCoV-19/Malaysia/3499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T7621C G11083T C13730T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501628
 2020-03-30 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260EFCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G23282T A23403G C27494Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506986
 2020-03-30 2020-08-02
 South Korea hCoV-19/Korea/KCDC2192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G5572T G11083T C14805T G16935T G26144T G27441T G28580T

EPI_ISL_507013 MT820464
 2020-03-30 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_507078
 2020-03-30 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D2B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1473A C3037T C14408T A23403G C29739T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_507898
 2020-03-30 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T G4720A C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507906
 2020-03-30 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T A9873R C14408T A23403G G25563T C26110Y G28230K ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507910
 2020-03-30 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T G29000R ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_507911
 2020-03-30 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T G7756T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_507912
 2020-03-30 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- T490A G922A C3177T C8782T T18736C C24034T T26729C G28077C T28144C A29700G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_507915
 2020-03-30 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T G278R C1059T C3037T C11758T G13415T C14408T C16726T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_508141
 2020-03-30 2020-08-04
 Australia hCoV-19/Australia/SAP451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G2891A C10741T A23403G T24364C A27669G T29233C

EPI_ISL_508338
 2020-03-30 2020-08-04
 India hCoV-19/India/IK1/2020
 AT1- C241T C3037T C14408T C15495T A23403G G25690T G28221T G29557T G29868A

EPI_ISL_508349
 2020-03-30 2020-08-04
 India hCoV-19/India/IK2/2020
 C241T C3037T G14131A C14408T A23403G G28221T G29868A

EPI_ISL_508908
 2020-03-30 2020-08-04
 France hCoV-19/France/ARA16322/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C14599T C15324T T19061C A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508958
 2020-03-30 2020-08-04
 France hCoV-19/France/ARA17177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C3037T G10318T C14408T G16414T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508987
 2020-03-30 2020-08-04
 France hCoV-19/France/ARA16665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C16952T A23403G G25563T G27289T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509010
 2020-03-30 2020-08-04
 France hCoV-19/France/ARA02052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- G91A C241T C3037T G11083T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509012
 2020-03-30 2020-08-04
 France hCoV-19/France/ARA17181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C5348T C8106T C14408T T22897G A23403G G25563T G25839T C28528T G29734C AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509070
 2020-03-30 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4236G G11083T C14805T T25655C G26144T GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_509765 MT846469
 2020-03-30 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0707/2020
 ATTA1- C241T C1059T C3037T A4386G C7113T C10319T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509766 MT846470
 2020-03-30 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0708/2020
 ATT1- C241T C1059T C3037T A4386G C7113T C10319T C14408T A23403G G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_509771 MT846475
 2020-03-30 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0713/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25471C G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_510818
 2020-03-30 2020-08-07
 Sweden hCoV-19/Sweden/20-50564/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_510944
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT0685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G11083T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511191
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511375
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C3924T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511395
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25339T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511407
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511414
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511415
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A6308G C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511422
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC G29777T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511436
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C25339T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511439
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1346A C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511442
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T G21641A A23403G G24077T C29555T G29742T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511461
 2020-03-30 2020-08-07
 Portugal hCoV-19/Portugal/PT1502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511526
 2020-03-30 2020-08-08
 Portugal hCoV-19/Portugal/PT0977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C14786T G16935T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511527
 2020-03-30 2020-08-08
 Portugal hCoV-19/Portugal/PT0978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T A6248C T10561C G14268A C14408T A20268G G22336C A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511657
 2020-03-30 2020-08-08
 Portugal hCoV-19/Portugal/PT1110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C10969T C14408T G15982A C16887T A23403G G25362T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511665
 2020-03-30 2020-08-08
 Portugal hCoV-19/Portugal/PT1118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T AATAGTGTCCCTTGGGATACTATA6656- G11083T C14408T A23403G G24077T C27527T C29218T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511667
 2020-03-30 2020-08-08
 Portugal hCoV-19/Portugal/PT1120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1514T C3037T C3177T C14408T T15978C A16725G A23403G TTAATCCAGTAATGGAACCAA26159- C26885T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511670
 2020-03-30 2020-08-08
 Portugal hCoV-19/Portugal/PT1123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C20384T A23403G A27751T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511748
 2020-03-30 2020-08-08
 Portugal hCoV-19/Portugal/PT1205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512491
 2020-03-30 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16965D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6990T C14408T A23403G G25650T C29137T C29200T

EPI_ISL_512811 MT872497
 2020-03-30 2020-08-11
 Sierra Leone SARS-CoV-2/human/SLE/KGH-G-8548/2020
 ATTAAAG1- C241T C1059T C3037T G4454T C14408T A20755C A23403G G25563T

EPI_ISL_513876 MW036086
 2020-03-30 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2472/2020
 C8782T C17747T A17858G C18060T G20002T G26567A T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514314
 2020-03-30 2020-08-16
 Israel hCoV-19/Israel/CVL-n14285/2020
 C241T C1059T C3037T C5365T C14408T A20755C A23403G G25563T A28811G

EPI_ISL_514652 MT892999
 2020-03-30 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C11224T C14408T C15654T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515271
 2020-03-30 2020-08-18
 United States hCoV-19/USA/WA-UW-4563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515344
 2020-03-30 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0062/2020
 ATTAAA1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515520
 2020-03-30 2020-08-19
 Brazil hCoV-19/Brazil/SP-118/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2370T C3037T C12053T C14408T A23403G G25088T C26822T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_515907
 2020-03-30 2020-08-20
 United States hCoV-19/USA/CA-CDPH014/2020
 ATTAAAGGTTT1- C241T GTT669- C1059T C3037T C14408T C18457T A23403G C25487T G25563T C27964T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516361
 2020-03-30 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C4423T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_516362
 2020-03-30 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21635/2020
 ATTAAAGGTTTA1- C241T C1059T A2465C C3037T C14408T A23403G C24381T G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_516376
 2020-03-30 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T G23236T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_518899 MT920039
 2020-03-30 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A11348G C14408T A23403G A23848G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_520721
 2020-03-30 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920632662/2020
 C241T C3037T C7765T T11205G C14408T A20268G A23403G T28334C G29734C

EPI_ISL_520722
 2020-03-30 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920632696/2020
 C241T C3037T C14408T C15654T A21081G A23403G GGG28881AAC

EPI_ISL_520723
 2020-03-30 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920633045/2020
 C241T C3037T C14408T C15656T A23403G G28077T GGG28881AAC G29734C

EPI_ISL_520724
 2020-03-30 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920633058/2020
 C241T C3037T A4687G T7171C C14408T A23403G C27002T GGG28881AAC C29095T

EPI_ISL_520725
 2020-03-30 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920633304/2020
 C241T A2514G C3037T C3704A C7851T C12085T C14408T G15982A G18880T G23311T A23403G A24170G GGG28881AAC C29025T CAC29730-

EPI_ISL_523505
 2020-03-30 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T G20433T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523944
 2020-03-30 2020-08-27
 Germany hCoV-19/Germany/NW-73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C527T G1440A G2891A C19547T C27625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524494
 2020-03-30 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-170DA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27281T G28851T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524500
 2020-03-30 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-171B62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2399T C3037T A11430G C14408T A23403G GGG28881AAC TCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29685-

EPI_ISL_524536
 2020-03-30 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-171E1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20283T C21034T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524550
 2020-03-30 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-171CE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1830G C3037T C10798A C13862T C14408T A23403G C26912Y C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524552
 2020-03-30 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-1715DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525638
 2020-03-30 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-33279-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T T29244C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525639
 2020-03-30 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-33281-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G A25505C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525640
 2020-03-30 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-33282-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C12400T C14408T C21646T A23403G G25563T G28812T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525641
 2020-03-30 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-33283-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C3253T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_525642
 2020-03-30 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-33284-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527862
 2020-03-30 2020-09-05
 Brazil hCoV-19/Brazil/SP-294/2020
 ATTAAAGGTTTATACCTTCCCAG1- G24A C241T C3037T C6196T C12053T C14408T A23403G G25088T GGG28881AAC A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_527881
 2020-03-30 2020-09-05
 Nigeria hCoV-19/Nigeria/ED20-CV162/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C5654T C14408T C20371T A23403G G28001T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_529964
 2020-03-30 2020-09-10
 Indonesia hCoV-19/Indonesia/JI-ITD-1273V/2020
 ATTAAAGGT1- C1912T G6532T G17411A G22616T

EPI_ISL_530051
 2020-03-30 2020-09-10
 Spain hCoV-19/Spain/MD-LP48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2305T C3037T C14408T A20268G C21691T A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534815
 2020-03-30 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2DD9/2020
 C241T C1059T C3037T C14408T A22798G A23403G C23896T G25563T

EPI_ISL_534840
 2020-03-30 2020-09-14
 United Kingdom hCoV-19/England/OXON-B31AF/2020
 C241T C3037T C10818T C14408T A23403G G24781T GGG28881AAC A29896R AAAA29900M

EPI_ISL_534851
 2020-03-30 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3321/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_534882
 2020-03-30 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3707/2020
 C241T C1059T C3037T C14408T G18781T A23403G G25563T TA25663CT

EPI_ISL_536336
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242858/2020
 ATTA1- C241T C1059T C1912T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536338
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C11916T C14408T C18998T G21786A A23403G G25563T G28362K G29540A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536339
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G G28086R T28088W GGG28881AAC C29247T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536340
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242900/2020
 ATTAAAGGTT1- C241T C3037T C4965T A8072G C14408T A16011G A21213G A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536342
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00242918/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T C18326T C19718T A23403G C24896T G25217T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536344
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243024/2020
 ATTAAA1- C241T C1059T C3037T C14408T C18252Y A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536349
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243118/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536350
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243222/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T G17964A A23403G C23575T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536351
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243245/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536352
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C2416T C3037T C14408T A23403G C25275T G25563T C26408T G28086R T28088W CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536354
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243313/2020
 ATTAAAG1- C241T C1059T C3037T C14408T C18060T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536355
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243317/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T C18060T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536356
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C18060T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536357
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T C18060T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536358
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C18060T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536359
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243345/2020
 ATTAA1- T10W C241T C1059T C3037T C14408T C18060T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536360
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243347/2020
 ATTA1- C241T C3037T C14408T G20373T A23403G T27299C GGG28881AAC T29148C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536362
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243460/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14025M C14408T C15277Y C18060T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536363
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- T490A C3177T C8782T A11600G G16754A G17761K T18736C C24034T T26729C C27635T C27881T G28077C T28144C A29567C A29700G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536367
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C15324T A23403G C25433T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_536375
 2020-03-30 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T C14408T A23403G C25904T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_537494
 2020-03-30 2020-09-16
 United States hCoV-19/USA/CA-UCLA-155/2020
 ATTAAAGGTTT1- C241T C379A C1059T C3037T T5527G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_537495
 2020-03-30 2020-09-16
 United States hCoV-19/USA/CA-UCLA-156/2020
 ATTAAAGGTTTAT1- C2676T C8782T C16646T C21575T A22606T G23755T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_537716
 2020-03-30 2020-09-16
 Spain hCoV-19/Spain/CN-CSIC-97006508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G G29734C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538333
 2020-03-30 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2802/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_538335
 2020-03-30 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A11782R C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538787
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA22E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G2100T G2258A G28632S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538799
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA30D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T C7768T G11083T C14805T C17104T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538852
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T G21724T C22326T A23403G G23587C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538869
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T G18180A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538906
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA2B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C103Y ATG1605- G2100T G2258A G19679K C21638T G22289K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538932
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA1F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T G21724T A23403G G23587C GGG28881AAC C29831T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538944
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21624T C23191T A23403G GGG28881AAC C28969T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538995
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A83E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539003
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A826C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539083
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A867F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T T26066C C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539129
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A879A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539132
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8A46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3096T C4927T A10460G G11083T C14805T T17247G C20759T C25904Y G26144T C28760A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539158
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539178
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8E0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C3602T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539211
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8E3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G13762T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539217
 2020-03-30 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8E2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539299
 2020-03-30 2020-09-17
 Russia hCoV-19/Russia/MOW-CRIE-160158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T A3962- C4334T C14408T A23403G G25217T GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_539310
 2020-03-30 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92721-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T493C C14408T A23403G ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_539313
 2020-03-30 2020-09-17
 Netherlands hCoV-19/env/Netherlands/FR-92719-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTG1- C241T G2527T C3037T C3373A C9733T A23403G GGG28881AAC TCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29685-

EPI_ISL_539314
 2020-03-30 2020-09-17
 Netherlands hCoV-19/env/Netherlands/FR-92719-N1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A C9733T T13972G C14408T A23403G GGG28881AAC CAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29550-

EPI_ISL_539325
 2020-03-30 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92723-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16017T C26735T ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_539776
 2020-03-30 2020-09-19
 Czech Republic hCoV-19/Czech Republic/NRL-5607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3371T T9115A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541237
 2020-03-30 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T490A C3177T C8782T A9019G T13180C C16084T T18736C C24034T T26729C G28077C T28144C A29700G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_542795
 2020-03-30 2020-09-23
 United States hCoV-19/USA/TX-HMH-1726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542803
 2020-03-30 2020-09-23
 United States hCoV-19/USA/TX-HMH-1736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542805
 2020-03-30 2020-09-23
 United States hCoV-19/USA/TX-HMH-1738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547474
 2020-03-30 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6977A C7006T T11638C C14408T G22708T A23403G GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547475
 2020-03-30 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC T29128C G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547493
 2020-03-30 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10397C C14408T A23403G A28779G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547517
 2020-03-30 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC G28975A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547518
 2020-03-30 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549010
 2020-03-30 2020-09-28
 Netherlands hCoV-19/env/Netherlands/FR-92719-N2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTG1- C3373A A3778G A23403G ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_549014
 2020-03-30 2020-09-28
 Netherlands hCoV-19/env/Netherlands/NH-92722-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1338T G16690T A23403G CGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCATATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGCTGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29228-

EPI_ISL_549015
 2020-03-30 2020-09-28
 Netherlands hCoV-19/env/Netherlands/NH-92722-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G331T C3037T C10525T C14408T A23403G G24521T GGG28881AAC ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_560570
 2020-03-30 2020-09-29
 France hCoV-19/France/CVL8265/2020
 ATTAAAGGTTTATACC1- A26- C28T C241T C3037T C14408T C21233T A23403G A23691G C24621T GGG28881AAC C29743A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_565956
 2020-03-30 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C14408T C17474T C18877T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_569412
 2020-03-30 2020-10-02
 France hCoV-19/France/IHU-0252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1942T C2416T C3037T G3338T C14408T G15438T C21597T A23403G G25563T C25731T AGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29797-

EPI_ISL_569413
 2020-03-30 2020-10-02
 France hCoV-19/France/IHU-0254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T C3037T C6286T G10262T C14408T C21622T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT293156
 2020-03-30 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AACC34HTTH G578A C8782T C17747T A17858G C18060T A24694T C25207T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT293173
 2020-03-30 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- G91B C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAA

MT293175
 2020-03-30 2020-04-03
 United States SARS-CoV-2/human/USAWA-UW410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT345868
 2020-03-30 2020-04-14
 United States SARS-CoV-2/human/USA/CT-UW-4344/2020
 ATTAAAGGTTTATACCTTCCCA1- A31T C36T C241T C1059T C3037T C10851T C14408T A23403G G25563T -29904AAAAAAAA

MT345869
 2020-03-30 2020-04-14
 United States SARS-CoV-2/human/USA/CT-UW-4346/2020
 ATTAAA1- A31T AC35WT C241T C1059T C3037T C3140T T9995G C14408T C16260T A23403G G25563T C28821A -29904AAAAAAA

MT345870
 2020-03-30 2020-04-14
 United States SARS-CoV-2/human/USA/CT-UW-4347/2020
 ATTAAAGGTTTAT1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T TGG21294AAA A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT345873
 2020-03-30 2020-04-14
 United States SARS-CoV-2/human/USA/CT-UW-4366/2020
 ATTAAAGGTT1- A31T AAC34TTT C241T C1059T C3037T C11916T C13515T C14408T C18998T A23403G G25563T G29540A -29904AAAAAAAAAAAAAA

MT345874
 2020-03-30 2020-04-14
 United States SARS-CoV-2/human/USA/CT-UW-4372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C3768T C10851T C14408T A23403G G25563T C25584T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT706212
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706214
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3463G C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706215
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706222
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4755T C8316T C14408T G15760A T20157C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706225
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11591T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706226
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16830T C16887T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706228
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706229
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706232
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G28539T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706234
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A14330G C14408T A23403G T27299C A27989G GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706236
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A C16428T T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706237
 2020-03-30 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT731327
 2020-03-30 2020-07-08
 Morocco SARS-CoV-2/human/MAR/RMPS04/2020
 C241T C1684T C3037T G6404T C8208T C14408T C15324T G22363T A23403G C29362T

MT731468
 2020-03-30 2020-07-08
 Morocco SARS-CoV-2/human/MAR/RMPS-05/2020
 C241T C1059T C3037T C14408T A23403G G25563T

MT731746
 2020-03-30 2020-07-08
 Morocco SARS-CoV-2/howo sapiens/MAR/RMPS05/2020
 C241T C1059T C3037T C14408T A23403G G25563T

MT797769
 2020-03-30 2020-07-24
 United States SARS-CoV-2/human/USA/COVID20-0064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T490A C3177T C8782T C24034T T26729C G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT810555
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0419-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C27630T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810567
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0439-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T G15265A A23403G G24985T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810572
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0447-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810575
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0452-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C24374T C25350T C27503T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810578
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0457-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C24384T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810581
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0461-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810926
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0190-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G10360A C14408T A23403G G24757T A27938G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811181
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0132-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6629T C14408T C23277T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811218
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0524-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811313
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0684-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T12955C C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811326
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0704-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T12955C C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811329
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0707-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T G29553A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811331
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0711-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6629T C14408T C23277T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811383
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0805-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811384
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0806-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T12955C C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811385
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0809-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811386
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0810-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C15842T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811387
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0812-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811389
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0815-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T G21220T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811390
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0816-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G526T C1059T C3037T T3526C C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811394
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0823-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6629T C14408T C23277T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811432
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0939-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C401T C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811442
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0976-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T12955C C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811443
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0977-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C11671T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811453
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0990-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2416T C3037T C14408T C17104T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811664
 2020-03-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0150-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G16622A A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873418
 2020-03-30 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00014/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873442
 2020-03-30 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00015/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MW001232
 2020-03-30 2020-09-14
 United States SARS-CoV-2/human/USA/197-ETA/2020
 C241T C1059T C3037T C14408T G18255T G21986A A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW008582
 2020-03-30 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-108D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- T490A C3177T C8782T C10029T T16157A C16260T T18736C TTTGGGTGTTTA21982- C24034T T26729C G28077C T28144C A29700G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MW008583
 2020-03-30 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-110F/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C11289T C14408T A23403G G25563T C27964T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

MW008584
 2020-03-30 2020-09-15
 United States SARS-CoV-2/human/USA/GA-EHC-113J/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- T490A C3177T C6638T C8782T T18736C C24034T T26729C G28077C T28144C A29700G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MW023498
 2020-03-30 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T490A C3177T C8782T A9019G T13180C C16084T T18736C C24034T T26729C G28077C T28144C A29700G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

NMDC60013208
 2020-03-30 2020-06-01
 China hCoV-19/Guangzhou/ID114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013236
 2020-03-30 2020-06-01
 China hCoV-19/Guangzhou/ID115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16616T C23260A A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

NMDC60013274
 2020-03-30 2020-06-01
 China hCoV-19/Guangzhou/ID112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4105T G11083T C14805T C23707T C24370T A25590T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417018
 2020-03-31 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_417019
 2020-03-31 2020-03-23
 Belgium hCoV-19/Belgium/ULG-6754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C13517T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421185
 2020-03-31 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10006/2020
 C241T C3037T G11083T C14408T T15978C A23403G G24794T GGG28881AAC

EPI_ISL_421198
 2020-03-31 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10024/2020
 C241T C3037T C7564T C14408T A23403G GGG28881AAC

EPI_ISL_421202
 2020-03-31 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10028/2020
 G1440A G2891A C5144T

EPI_ISL_421203
 2020-03-31 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10029/2020
 C241T A563T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_421206
 2020-03-31 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10032/2020
 G1440A G2891A C5144T C9561T C21622T

EPI_ISL_421207
 2020-03-31 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10033/2020
 C241T C3037T C14408T C15277T C15324T A23403G G25249T C25797T

EPI_ISL_421210
 2020-03-31 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10043/2020
 C241T C3037T G11083T C14408T T15978C A23403G G24794T GGG28881AAC

EPI_ISL_421932
 2020-03-31 2020-04-09
 United Kingdom hCoV-19/England/20144013504/2020
 C241T C3037T C14408T C15324T C18904T A23403G G25606K G25687T

EPI_ISL_421935
 2020-03-31 2020-04-09
 United Kingdom hCoV-19/England/20144014604/2020
 C241T C3037T C14408T T22378Y A23403G GGG28881AAC

EPI_ISL_421946
 2020-03-31 2020-04-09
 United Kingdom hCoV-19/England/20144037304/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_421948
 2020-03-31 2020-04-09
 United Kingdom hCoV-19/England/20144049404/2020
 C241T C313T C3037T C14408T T19680W A23403G GGG28881AAC G28960T

EPI_ISL_422105
 2020-03-31 2020-04-10
 United Kingdom hCoV-19/Wales/PHWC-26F25/2020
 C241T C3037T C14408T A23403G

EPI_ISL_422431
 2020-03-31 2020-04-10
 Singapore hCoV-19/Singapore/38/2020
 ATTAAA1- C241T C3037T G7393T C14408T G20292R A23403G A24520R GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_422432
 2020-03-31 2020-04-10
 Singapore hCoV-19/Singapore/39/2020
 ATTAAAGGTT1- C241T C3037T T6430C G7393T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_422433
 2020-03-31 2020-04-10
 Singapore hCoV-19/Singapore/40/2020
 ATTAAAGGTTTA1- GC6309AA C6312A G11083T C13730T G15672K C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_422434
 2020-03-31 2020-04-10
 Singapore hCoV-19/Singapore/41/2020
 ATTA1- C6310A C6312A G11083T C13730T C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_422435
 2020-03-31 2020-04-10
 Singapore hCoV-19/Singapore/42/2020
 ATTAAA1- GC6309RA C6312A G11083T C13730T C19524T C21575Y C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_422453
 2020-03-31 2020-04-10
 United States hCoV-19/USA/WI-GMF-00498/2020
 C241T C1059T C3037T C14408T A23403G C23731T G25563T TTA27795-

EPI_ISL_422587 LR878018
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17125T T17247C G26144T G27201T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422588 LR878020
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17304T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422591 LR878023
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422592 LR878024
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422593 LR878021
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422594 LR878033
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3330T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422595 LR878029
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C900T C3037T C14408T C20031A A23403G C27046T GGG28881AAC C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422597 LR878037
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422598 LR878031
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C12085T C14408T C15324T A23173G A23403G C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422599 LR878035
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3393T C14408T G20275A C21575T A23403G C27092T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422628 LR878028
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422629 LR878034
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422631 LR878012
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C7318T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422633 LR878019
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8862A C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422634 LR878027
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2527A C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422635 LR878025
 2020-03-31 2020-04-11
 Netherlands hCoV-19/Netherlands/ZuidHolland_99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12815T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423448
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20142023704/2020
 C241T G2164A C3037T C14408T C22326T A23403G GGG28881AAC

EPI_ISL_423472
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144000204/2020
 C21T C241T C3037T C4002T G10097A C13536T C14184T C14408T C15738Y C21058T A23403G C23731T GGG28881AAC

EPI_ISL_423473
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144000404/2020
 T10C C241T C3037T C14408T C21658Y A23403G C27046T GGG28881AAC

EPI_ISL_423479
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144002904/2020
 C241T C3037T C14408T G21204T A23403G GGG28881AAC

EPI_ISL_423481
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144003604/2020
 C241T C3037T C6487T C12138T C14408T T18768C C19983Y A23403G GGG28881AAC

EPI_ISL_423486
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144004504/2020
 C1514T ATG1605- T12027C C20270T C23557Y G28179A A29683T

EPI_ISL_423487
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144004704/2020
 C241T C3037T C3411T C11681T C14408T A23403G C25350T C27005T

EPI_ISL_423488
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144004804/2020
 C241T G2164A C2306T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423493
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144006304/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423497
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144007604/2020
 C241T C3037T C14408T G22638A A23403G GGG28881AAC

EPI_ISL_423500
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144008304/2020
 C241T C2724T C3037T C5822T C14408T C15763T A23403G A28811T GGG28881AAC

EPI_ISL_423502
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144008904/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423503
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144009004/2020
 C241T G2164A C3037T C14408T C22353Y A23403G GGG28881AAC

EPI_ISL_423508
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144013704/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_423509
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144014504/2020
 A2480G C2558T A4015T G9111A C10232T G11083T C14805T G26144T

EPI_ISL_423535
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144036004/2020
 C241T AAGTCATTT686- C3037T C10377Y C14408T A23403G G25429T C25916T

EPI_ISL_423561
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20144073804/2020
 C241T C3037T C14408T A23403G C25672T GGG28881AAC

EPI_ISL_423583
 2020-03-31 2020-04-12
 United Kingdom hCoV-19/England/20146060504/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_424929
 2020-03-31 2020-04-14
 United States hCoV-19/USA/NY-NYUMC122/2020
 C3037T C14408T A23403G G25563T

EPI_ISL_425146
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C11653T C14408T C18705T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425155
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425158
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G25855T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425164
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425167
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T G9053C C14408T A23403G T29008C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425168
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T C22687T A23403G G25563T C25671T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425170
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C5826T C14408T G20356T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425172
 2020-03-31 2020-04-14
 United States hCoV-19/USA/WI-UW-115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425239
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-737C7/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425240
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-737D6/2020
 C241T A2775G C3037T G4255T C6861T C13568T C14408T A20355G A23403G A26530G

EPI_ISL_425242
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-737F4/2020
 C241T C1684T C3037T C4002T G10097A C10198A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC

EPI_ISL_425246
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7386A/2020
 C241T C3037T C5144T C5806T C14408T A23403G GGG28881AAC

EPI_ISL_425249
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-738A6/2020
 C241T C3037T C8025T C13019T C14408T A20268G A23403G C29108T G29734C

EPI_ISL_425251
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-738C4/2020
 C241T C3037T G8179T A13703G C14408T A23403G GGG28881AAC T29609C

EPI_ISL_425252
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-738D3/2020
 C241T C3037T C14408T A23403G G28086T GGG28881AAC

EPI_ISL_425255
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7391C/2020
 G11083T C14805T T17247C G17334T G26144T

EPI_ISL_425262
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-739B2/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_425264
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-739EF/2020
 C241T C3037T C14408T A23403G G28812T GGG28881AAC

EPI_ISL_425266
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73A0A/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_425269
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73A37/2020
 C241T C3037T C4069T C10702T C14408T A23403G GGG28881AAC

EPI_ISL_425270
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73A46/2020
 C241T C3037T T4591C C14408T T19839C A23403G GGG28881AAC

EPI_ISL_425276
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73ACE/2020
 C241T C3037T C13860T C14408T A23403G GGG28881AAC G29414T

EPI_ISL_425424
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76D3B/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_425427
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76D95/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425428
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76DB3/2020
 C241T C3037T C14408T A23403G C27213T A28352T GGG28881AAC

EPI_ISL_425434
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76E74/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_425437
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76EDE/2020
 C241T C1346T C3037T C14408T A23403G G28514T

EPI_ISL_425441
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76F62/2020
 T3931C G11083T C14805T G26144T G28857T

EPI_ISL_425450
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-77004/2020
 C241T C635T C3037T C14408T A23403G C25350T

EPI_ISL_425452
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-77022/2020
 G1440A G2891A C4668T G28362T C28708T

EPI_ISL_425454
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-77040/2020
 C241T C1912T C3037T C14408T C21772T A23403G A24735T G25269T GGG28881AAC

EPI_ISL_425455
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7705F/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425458
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7708C/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425460
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/England/CAMB-770B9/2020
 C241T C3037T A11270G C14408T A23403G GGG28881AAC

EPI_ISL_426007
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB442/2020
 C8782T C17470T C26088T T28144C

EPI_ISL_426008
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB501/2020
 C8782T C17470T C26088T T28144C G29321T

EPI_ISL_426009
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB502/2020
 C241T C1377T C3037T C14408T C16289T A23403G G25429T G28077T

EPI_ISL_426011
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB513/2020
 C241T G662T C1514T C3037T C14408T G18546T A20793T G21987C C23086T A23403G T26723A C27046T GGG28881AAC

EPI_ISL_426015
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB551/2020
 C8782T C17470T C23525T C26088T T28144C

EPI_ISL_426016
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB555/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_426023
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB565/2020
 C241T C3037T A5040G C14408T G15439A A23403G G25429T G25687T C28737T

EPI_ISL_426024
 2020-03-31 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB566/2020
 G11083T C14805T T17247C C25511T G26144T

EPI_ISL_426136 MT345882
 2020-03-31 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-4406/2020
 ATTAAAGGTT1- C36T C241T C1059T C3037T C4113T C14408T A23403G G25563T

EPI_ISL_426137 MT345883
 2020-03-31 2020-04-14
 United States SARS-CoV-2/human/USA/WA-UW-4407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C36T C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426465 MT350247
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0057/2020
 ATTAAAGGTTTATACCTTCC1- C241T C2416T C3037T C3923T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_426466 MT350248
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A652T C1059T C3037T C14408T A23403G G25563T C27688T G29868A C29870A

EPI_ISL_426467 MT350249
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0059/2020
 ATTAAAGGTTTA1- C241T A652T C1059T C3037T C14408T A23403G G25563T C27688T C29870A

EPI_ISL_426468 MT350250
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0060/2020
 ATT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_426470 MT350252
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0063/2020
 ATTAAAGGT1- T11Y C241T C1059T C3037T C14408T A23403G G24755T G25563T

EPI_ISL_426561
 2020-03-31 2020-04-17
 United States hCoV-19/USA/AZ-TG273294/2020
 C241T C1059T C3037T C14408T A14747G C16658T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426562
 2020-03-31 2020-04-17
 United States hCoV-19/USA/AZ-TG273300/2020
 C241T C1059T C3037T C14408T A14747G C16658T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426563
 2020-03-31 2020-04-17
 United States hCoV-19/USA/AZ-TG273302/2020
 C241T C1059T C3037T C14408T A14747G C16658T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426887 MT517424
 2020-03-31 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_10/2020
 ATTAAAGGTTT1- C241T C541T C1059T C3037T C3177A G11083T C14408T C20016T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_426888 MT517425
 2020-03-31 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_12/2020
 ATTAAAGGTTT1- C241T C1404T C3037T C6555T C14408T A23403G G25971T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_427160 MT451637
 2020-03-31 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC932/2020
 C241T C1059T C1392T C3037T G3251T C14408T A23403G G25563T C26625T

EPI_ISL_427163 MT358653
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/CT-UW-4244/2020
 ATTAAAGGTTTATACCT1- A31W AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G28089T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427164 MT358654
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/CT-UW-4251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T A10479G C14408T A21137G A23403G G25563T G28191T C29296T AAAA29900-

EPI_ISL_427173 MT358661
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/OR-UW-4300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T C14408T A23403G G25563T G29862A G29864A TG29867AA C29870A

EPI_ISL_427222 MT358728
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C36T C241T C1059T C3037T C7728A C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427223 MT358729
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-3969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_427240 MT358746
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- C241T C1059T TT1333AA C3037T AGG13512TTA C14408T A23403G G25563T A29903G

EPI_ISL_427241 MT358747
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4109/2020
 ATTAAAGGTTTATACC1- AAC34TTT C241T C1059T C3037T C4084T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAA29888-

EPI_ISL_427242 MT358748
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4111/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AAC34TTT C241T C1059T C3037T C14408T T21146A A23403G G25563T

EPI_ISL_427246 MT358645
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4188/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T C17118T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427247 MT358646
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4197/2020
 AT1- C36T C241T C1059T C3037T C14408T A23403G G25563T C27804T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427248 MT358647
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4213/2020
 AT1- AAC34TTT C241T C1059T C3037T C6040T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_427249 MT358648
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4217/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C8782T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427250 MT358649
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4227/2020
 A1- T13C ACC35TTH C241T C1059T C3037T C14408T C19263T A23403G G25563T C29445T

EPI_ISL_427251 MT358650
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4228/2020
 ATTAAAGGTTTAT1- CCCAGGTAACAAACCAA19- C36T C241T C313T C3037T C3096T C14408T A23403G T24364C C25904T GGG28881AAC CAGTG29762- AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427252 MT358656
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4281/2020
 ATTAAAGGT1- A1262G G8602A C8782T C17747T A17858G C18060T G21800T C25418A G26152A G27090A T28144C C29838T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427253 MT358657
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4289/2020
 A1G A4D AAC34HWT C241T C1059T C3037T C12880T C14408T C20233T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427254 MT358658
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4290/2020
 ATTAAAGGTTT1- C36T C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427255 MT358659
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4291/2020
 ATTAAAGGTTTATACCTTCCCA1- A31T AAC34TTT C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_427256 MT358660
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AAC34TTT C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_427257 MT358662
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4315/2020
 ATTAAAGGTT1- A31T AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427258 MT358663
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4316/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAA29895-

EPI_ISL_427259 MT358664
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C6504T C10207T C14408T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_427260 MT358665
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T A34W C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_427261 MT358666
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4322/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_427263 MT358668
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4326/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAA29896-

EPI_ISL_427265 MT358670
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G8602A C8782T C17747T A17858G C18060T T23482C C25418A G26152A T28144C A29903-

EPI_ISL_427269 MT358706
 2020-03-31 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4499/2020
 AT1GA A4T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_427288
 2020-03-31 2020-04-17
 United States hCoV-19/USA/OH-OSUP0016/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C6040T C8782T G11083T G12478A T18736C C18877T C24034T T26729C G28077C T28144C C28896G A29700G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_427290
 2020-03-31 2020-04-17
 United States hCoV-19/USA/OH-OSUP0017/2020
 ATTAAAGGTTTATACCTTCC1- A22G C241T C1059T C3037T C13275T C14408T C16616T C20368T A23403G G25563T CT29857TC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_428673 MT371050
 2020-03-31 2020-04-21
 Sri Lanka SARS-CoV-2/human/LKA/COV486/2020
 C1762T C14805T T17247C G26144T

EPI_ISL_428910
 2020-03-31 2020-04-22
 Russia hCoV-19/Russia/Khabarovsk-88201/2020
 C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_429020 MT385444
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0721/2020
 C8782T C17747T A17858G C18060T C21595T T25962G T28144C G28392T

EPI_ISL_429023 MT385447
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0740/2020
 C241T C1059T A2018G A2160G C3037T G12167A C14408T A16060G T21995C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_429025 MT385449
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0737/2020
 ATTA1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_429026 MT385450
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0731/2020
 A1- C241T C1059T C3037T G9049T T9070C T10960C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_429598
 2020-03-31 2020-04-23
 United States hCoV-19/USA/WA-UW-4546/2020
 TTAAAGGTT2- T13A C5730T A6693G C8782T TT8885AA T13112A G13687T G14335T C14877T C17747T A17858G C18060T T21146A T28144C C28519T A29188T

EPI_ISL_429600 MT375430
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4549/2020
 ATTAAAGGTTTATACCTTCC1- A31T C36T C241T C1059T C3037T C14408T C16750T A23403G G25563T G29553A

EPI_ISL_429605 MT375434
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C6040T C14408T T22318C A23403G G25563T -29904AAAAAAAAAAAAA

EPI_ISL_429608 MT375437
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4593/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C14408T C16289T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_429609 MT375438
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAA29900-

EPI_ISL_429611 MT375440
 2020-03-31 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A34H C36T C241T C1059T C3037T C14408T A23403G G25563T A29903-

EPI_ISL_429794
 2020-03-31 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS6479831/2020
 C241T C1059T C3037T C14408T C16750T A23403G G25563T G29705T AAAAAAAAAA29894-

EPI_ISL_430121 MT632626
 2020-03-31 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S267/2020
 C241T C1059T C3037T A4091G C9924T C14408T A23403G G25563T G26918T G29553A

EPI_ISL_430125 MT632632
 2020-03-31 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S271/2020
 C8782T C17747T C17766T A17858G C18060T T28144C

EPI_ISL_430153 MT632631
 2020-03-31 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S299/2020
 G368A C8782T C17747T C17766T A17858G C18060T T28144C

EPI_ISL_430351
 2020-03-31 2020-04-26
 United States hCoV-19/USA/NY-NYUMC324/2020
 C241T C1059T G1181T G2731A C3037T C11916T C14408T C18998T A23403G G25563T TTA26159- G29540A

EPI_ISL_430479 MT451680
 2020-03-31 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC995/2020
 C4540T C8782T T9477A C14805T C17470Y G17632A G25979T T28144C C28311T C28657T C28863T

EPI_ISL_430551 MT451674
 2020-03-31 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC989/2020
 C241T C3037T T7438C C14408T A23403G A26864G C27630T C29353T

EPI_ISL_430556 MT451675
 2020-03-31 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC990/2020
 C241T C1059T C2523T C3037T C14408T A23403G G25563T

EPI_ISL_430801
 2020-03-31 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C3037T C14408T A20268G A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_430802
 2020-03-31 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T T20989A A23403G GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_430938 MT412295
 2020-03-31 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-4226/2020
 ATTAAAGGTTTATACC1- T17G AAC34TTT C8782T C17747T A17858G C18060T T28144C G29864A TG29867AA C29870A

EPI_ISL_430941 MT412298
 2020-03-31 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-4279/2020
 ATTAAAG1- AAC34TTT C241T C1059T C3037T C6040T C14408T A23403G G25563T TG29867AA C29870A

EPI_ISL_430942 MT412299
 2020-03-31 2020-04-28
 United States SARS-CoV-2/human/USA/ID-UW-4307/2020
 TAAAGGTTTATACCTTCCCAGGTAACAAA3- C36T C241T C1059T C3037T C13665T C14408T A16387T A23403G G25563T A26055G C28519T G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_430951 MT412308
 2020-03-31 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-4413/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T A29403G TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_432200
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-276C5/2020
 A1- G1440A G2891A C12923T C25669T G28851T

EPI_ISL_432206
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T937C C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432208
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-278A1/2020
 C241T C3037T C14408T G19962K A23403G C26750M

EPI_ISL_432214
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-273CE/2020
 A2480G C2558T C2607T G11083T C14805T A17656G G26144T

EPI_ISL_432218
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29BB5/2020
 A1- G1148T A1515G C9223T G11083T C14805T T17247C G26144T C29837T

EPI_ISL_432223
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27443/2020
 AT1- G11083T C14805T T17247C G26144T C29482T

EPI_ISL_432224
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27786/2020
 ATT1- C241T C3037T C12084T C14408T A23403G GGG28881AAC

EPI_ISL_432232
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27391/2020
 AT1- C241T C3037T C14408T G17964A A23403G C23575T G24959T

EPI_ISL_432238
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27C1E/2020
 C241T C3037T C14408T A23403G

EPI_ISL_432242
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27328/2020
 G1440A G2891A C9491T A15779G C25669T G28851T

EPI_ISL_432254
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2748F/2020
 C241T C3037T C11704Y C14408T A23403G GGG28881AAC T29855Y

EPI_ISL_432260
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27197/2020
 C241T C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_432277
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_432278
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-275C8/2020
 AT1- C241T C1059T C3037T C14408T C16329T A18639G A23403G C23536T G25563T C25731T C29625T

EPI_ISL_432282
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-274AD/2020
 AT1- C241T C3037T T13572Y C14408T A23403G GGG28881RRS

EPI_ISL_432285
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-271E2/2020
 ATTAA1- G1440A G2891A C25669T G28851T

EPI_ISL_432299
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27470/2020
 ATTAA1- C241T C3037T T3788Y G5561A C14408T C21242T A23403G GGG28881AAC

EPI_ISL_432302
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-273A0/2020
 ATTA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_432303
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27759/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_432306
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27689/2020
 ATTAAAGGTTTA1- A2480G C2558T G11083T C14805T C19983T G23749T G26144T

EPI_ISL_432307
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27267/2020
 AT1- C241T C3037T C14408T A23403G

EPI_ISL_432312
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-271F1/2020
 ATT1- G1440A G2891A G4720T C16329T A27669G

EPI_ISL_432314
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-276B6/2020
 ATT1- A1515G C3903T C9223T G11083T T13064C C14805T T17247C G21123T G26144T

EPI_ISL_432529
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CC905/2020
 C2558T G11083T C14805T C16616T C25463T A25822G G26144T C29167T

EPI_ISL_432533
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CCC93/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_432547
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CD52E/2020
 ATG1605- A1904G C8090T C10789T A12796C

EPI_ISL_432802
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C5359/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432963
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F0E2/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_432965
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F10D/2020
 G431A ATG1605- C20270T C25710T A29683T

EPI_ISL_432967
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F12B/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_432970
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F176/2020
 A2480G C2558T T7021C G11083T C14805T G26144T

EPI_ISL_433216
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB613/2020
 G11083T C14805T G26144T G28842T

EPI_ISL_433217
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB620/2020
 C241T C1059T C3037T C11747T C14408T A23403G G25563T

EPI_ISL_433525
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433527
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C3037T G6872R C14408T T17126C A20268G A23403G C28770T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433551
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C20436T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433552
 2020-03-31 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C8727T C12710T T15915C C28854T

EPI_ISL_434082 MT632941
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S322/2020
 C8782T G9968A C17747T A17858G C18060T T28144C

EPI_ISL_434196 MT633020
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S436/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434197 MT632866
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S437/2020
 A8145G C8782T C17747T A17858G C18060T C26078T T28144C

EPI_ISL_434201 MT632909
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S441/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434209 MT632810
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S449/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T

EPI_ISL_434211 MT632880
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S451/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434212 MT632992
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S452/2020
 C8782T C17747T A17858G C18060T T28144C C29366T

EPI_ISL_434214 MT632795
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S454/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T26106G C28519T A29188T

EPI_ISL_434215 MT632850
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S455/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434247 MT633039
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S487/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434257 MT632890
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S497/2020
 G1401A C8782T T13438C C17747T A17858G C18060T T28144C

EPI_ISL_434259 MT632860
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S499/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434280 MT633006
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S520/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434286 MT632840
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S526/2020
 G3638T A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434288 MT632983
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S528/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434298 MT632824
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S538/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434305 MT632874
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S545/2020
 C3832T G8602A C8782T C17747T A17858G C18060T G26152A T28144C

EPI_ISL_434308 MT632786
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S548/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T19909G T28144C C28519T A29188T

EPI_ISL_434313 MT632830
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S553/2020
 A6693G C8782T C11195T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434328 MT632823
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S568/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434334 MT632842
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S574/2020
 C300T A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434335 MT632877
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S575/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434342 MT632949
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S582/2020
 G1401A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434346 MT632772
 2020-03-31 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S586/2020
 T1592C C1853T A6693G C8782T C14877T G15429A C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434368
 2020-03-31 2020-04-29
 Belgium hCoV-19/Belgium/ITM_C211/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26542T

EPI_ISL_434964
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH375/2020
 C302T T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28657T C28896G C29451T A29700G

EPI_ISL_434971
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH383/2020
 T490A C2627T C3177T C6040T C8782T C8950T C11941T G12478A T18736C C24034T G28077C T28144C A28155G C28896G C29451T A29700G

EPI_ISL_434972
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH384/2020
 C241T C1059T C3037T G6362A C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_434975
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH388/2020
 C241T C1059T C3037T C13019T C14408T A23403G G25563T C27964T

EPI_ISL_434979
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH392/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_434985
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH398/2020
 C241T C3037T C14408T A23403G C24463A T27801C C28725A

EPI_ISL_434986
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH399/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C G21051A C24034T G25429T T26729C T26972C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434988
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH401/2020
 C241T C1059T C3037T C14408T T19905C A23403G G25563T C27964T C29095T

EPI_ISL_434990
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH403/2020
 C241T C3037T C5812T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_434992
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH406/2020
 C241T C1059T C3037T C14408T C20320T A23403G G25563T

EPI_ISL_434994
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH408/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_434995
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH409/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_434997
 2020-03-31 2020-05-01
 United States hCoV-19/USA/TX-HMH412/2020
 C241T C1059T C3037T T8914G C14408T G17808T A23403G G23593T G25563T T27384C C27964T

EPI_ISL_435445
 2020-03-31 2020-05-05
 United States hCoV-19/USA/LA-SR0140/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_435447
 2020-03-31 2020-05-05
 United States hCoV-19/USA/LA-SR0143/2020
 C241T C1059T C3037T C14408T A23403G A24952G G25563T C27964T C28826T

EPI_ISL_435465
 2020-03-31 2020-05-05
 United States hCoV-19/USA/LA-SR0162/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_435467
 2020-03-31 2020-05-05
 United States hCoV-19/USA/LA-SR0164/2020
 C241T C1059T C3037T C10319T C14408T G16622A A23403G G25563T C27964T

EPI_ISL_435489
 2020-03-31 2020-05-05
 United States hCoV-19/USA/NY-NYUMC422/2020
 C241T C1059T C3037T C11916T T12757C C14408T G22051T A23403G G25563T

EPI_ISL_436107
 2020-03-31 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-22/2020
 C241T C1059T C3037T G12014T C14408T C16260T T18471C A23403G G25563T C28821A -29904CAAAAAAAAAAACAAATAAACAAAAAAAAACAAGGGAGAACAAAAAGAAAGCAAGAAAAAAAAAAAAAAAAA

EPI_ISL_436414
 2020-03-31 2020-05-06
 India hCoV-19/India/NCDC-2502/2020
 C6312A A9912M G11083T C13730T C14931Y G14974K G15146R C19524T A21137G C23929T AG24389MS C29555T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436415
 2020-03-31 2020-05-06
 India hCoV-19/India/NCDC-2507/2020
 GA72RM T78W C6312A A6925T C8016Y T8022K A9330R A9397R A9469M G10004K A10037R G10046R G11083K C11669Y A13653R C13730T C16362Y G19669R C21727Y G23401K C23929T AG24389MS G27358K C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436420
 2020-03-31 2020-05-06
 India hCoV-19/India/NCDC-2522/2020
 T2047W C6312A T8022K G11083T C13730T A23116W C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436421
 2020-03-31 2020-05-06
 India hCoV-19/India/NCDC-2525/2020
 C584Y C6312A T8022K C8543S C9039Y G11083T G13390K C13730T A14207M C19263M A21137G C23929T AG24389MS C28311Y C29555T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436422
 2020-03-31 2020-05-06
 India hCoV-19/India/NCDC-2535/2020
 C6310A C6312A A9942W G11083T C12312Y G12685T C13730T C19524T C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436567 MT706381
 2020-03-31 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9195T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436568 MT706382
 2020-03-31 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A12839C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437199
 2020-03-31 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG3/2020
 C241T C14408T G15957T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_437200
 2020-03-31 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG4/2020
 C241T C14408T G15957T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_437232
 2020-03-31 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0033/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437277
 2020-03-31 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0083/2020
 C241T C3037T G3955T C14408T C19961T A23403G C27046T GGG28881AAC

EPI_ISL_437363
 2020-03-31 2020-05-08
 United States hCoV-19/USA/MN-MDH-315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C37A C8782T C17747T A17858G C18060T A24694T T28144C G28812T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_437399 MT450885
 2020-03-31 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1917T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437547
 2020-03-31 2020-05-11
 United States hCoV-19/USA/LA-SR0207/2020
 C241T C1059T C3037T G4148T C10188T C14408T C17440T A23403G T24982C G25563T C27964T C29870A

EPI_ISL_437628
 2020-03-31 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1008/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26730T

EPI_ISL_437629
 2020-03-31 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1033/2020
 C241T C1059T C3037T C13517T C14408T A23403G G25563T

EPI_ISL_437636
 2020-03-31 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1192/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A C27799T

EPI_ISL_437820 MT461620
 2020-03-31 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4114/2020
 ATTAAAGGT1- A12T TCCC18GGGM C241T C1059T C3037T C10989T C14408T A21417T C21575T A23403G G25563T G29864D AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_437821 MT461621
 2020-03-31 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4210/2020
 ATTA1CGGG T10G T13A C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437822 MT461622
 2020-03-31 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4221/2020
 ATTAAAGGTTTA1- T18G CC20BH C28Y C8782T C17747T A17858G C18060T T28144C C29870A -29904AAAAAAAAAAAAAA

EPI_ISL_437823
 2020-03-31 2020-05-11
 United States hCoV-19/USA/WA-UW-4224/2020
 ATTAAAGGTTTAT1- TCC18GGG C241T C1059T C3037T AG3190- A3917G AA3920TT C10319T C14408T C18747T A21417T A23403G G25563T C27964T G29864A TG29867AA C29870A

EPI_ISL_437824 MT461623
 2020-03-31 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4225/2020
 A12T TC18GV C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_437827 MT461626
 2020-03-31 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4270/2020
 A1- AAA4- A12D TCCC18GGGA A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C G29742T

EPI_ISL_437829 MT461629
 2020-03-31 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4317/2020
 ATTAAA1- A12T C19V C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAAAA

EPI_ISL_437873
 2020-03-31 2020-05-11
 United States hCoV-19/USA/AK-PHL087/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T T6778W T7082Y C14006A C14408T A23403G C23423T G25563T G28044T

EPI_ISL_437911 MT459925
 2020-03-31 2020-05-11
 Greece SARS-CoV-2/human/GRC/56_37161/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A187G C241T C3037T C14408T A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438121
 2020-03-31 2020-05-12
 Austria hCoV-19/Austria/CeMM0358/2020
 C241T C3037T C14408T T22521K A23403G C24621T C27046T GGG28881AAC AAAAAAAAAAAAAAAA29888-

EPI_ISL_438783
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439381
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-772B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20611T A23403G GGG28881AAC AAA29901-

EPI_ISL_439393
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-779CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2676T C3037T C3587T C14408T A23403G T25202K GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_439405
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-77866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5554T C14408T A23403G G24368T T25202K C25463A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439431
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-77909/2020
 ATTA1- T1030C G11083T C14805T T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439449
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-776C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26439T G27882A GGG28881AAC

EPI_ISL_439503
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-774BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T G12797A C14805T C20844T C21108T T25202K G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439511
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-76EA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13592T C14408T C17502T A23403G T25202K GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_439998
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/BRIS-121F74/2020
 ATTA1- C241T C3037T G10097A C14408T A23403G C23731T T25202K G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440839
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-77A60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2937T C3037T C14408T A20268G A23403G T25202K AAAAAAAAAAAAAAA29889-

EPI_ISL_440971
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D368C/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_440972
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D369B/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_440973
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D36B9/2020
 C241T C3037T C6982T C14408T A23403G A26530G

EPI_ISL_440975
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D36D7/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_440976
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D36F5/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_440977
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3701/2020
 C241T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC CTGCTAGAATGG28893-

EPI_ISL_440980
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D373E/2020
 C241T C3037T C4002T G10097A T11419C C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_440981
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D374D/2020
 C241T C3037T C14408T A23403G C26534T GGG28881AAC

EPI_ISL_440983
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3789/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_440984
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3798/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_440985
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D37A7/2020
 C241T G256A C2416T C3037T C14408T C14786T G20578T A23403G C25460T G25563T

EPI_ISL_440986
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D37B6/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_440987
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D37C5/2020
 C241T C3037T C14408T A23403G C29586T

EPI_ISL_440988
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D37D4/2020
 A439G A2480G C2558T G11083T C14805T G26144T G26779T

EPI_ISL_440989
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D37E3/2020
 C241T C3037T C14408T A23403G

EPI_ISL_440990
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/LOND-D37F2/2020
 C241T C3037T C3373A C11195T C14408T C19170T A23403G GGG28881AAC A29467T

EPI_ISL_441112
 2020-03-31 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7815B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1155C G11083T G13627T C14805T C15540T C15960T G26144T G26314C C27879T A28338G

EPI_ISL_443184 MT461627
 2020-03-31 2020-05-12
 United States SARS-CoV-2/human/USA/WA-UW-4296/2020
 ATTAAA1- T10A T13A A31T AAC34TTT C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A G29706T G29862A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_443186 MT461630
 2020-03-31 2020-05-12
 United States SARS-CoV-2/human/USA/WA-UW-4414/2020
 A1- A4T AAC34TTT C241T C1059T C3037T G5194T G11807A C14408T A23403G A23440G G25563T G29862A G29864A TG29867AA C29870A

EPI_ISL_443255
 2020-03-31 2020-05-12
 United States hCoV-19/USA/MN-UMGC-4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T27384C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_443290
 2020-03-31 2020-05-12
 France hCoV-19/France/B5681/2020
 G23A TA25GT C28T C241T C1059T A1547G C3037T C14408T G21920A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_444662
 2020-03-31 2020-05-14
 United States hCoV-19/USA/NY-NYUMC545/2020
 C241T C1059T C3037T A4360C C14408T A23403G G25563T

EPI_ISL_444663
 2020-03-31 2020-05-14
 United States hCoV-19/USA/NY-NYUMC546/2020
 C241T C1059T C3037T C10376T C12789T C14408T A23403G G25563T

EPI_ISL_444669
 2020-03-31 2020-05-14
 United States hCoV-19/USA/NY-NYUMC552/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444673
 2020-03-31 2020-05-14
 United States hCoV-19/USA/NY-NYUMC556/2020
 C241T C3037T C14408T A23403G A25505C GGG28881AAC

EPI_ISL_444677
 2020-03-31 2020-05-14
 United States hCoV-19/USA/NY-NYUMC560/2020
 C241T C1059T C3037T C14408T C22712T A23403G G25563T C26873T

EPI_ISL_444706
 2020-03-31 2020-05-14
 United States hCoV-19/USA/NY-NYUMC589/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T C27476T

EPI_ISL_444848
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1292/2020
 C241T C1059T C3037T T11290C C14408T C17634T A23403G G25563T

EPI_ISL_444954
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-883/2020
 C241T C1059T C1302T C3037T C6638T C9979T G11417T C14408T C21952T A23403G G25563T G29779T

EPI_ISL_444956
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-887/2020
 C241T C1059T C3037T G5206T C12781T C14408T C15842A G22103C A23403G G25563T

EPI_ISL_444958
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-890/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444959
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-892/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444960
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-893/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_444964
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-899/2020
 C241T GTTATG515- C3037T C14408T A23403G GGG28881AAC C29095T

EPI_ISL_444968
 2020-03-31 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-907/2020
 C241T C601T C1059T C1302T C3037T C11653T C14408T T16008C A23403G G25563T

EPI_ISL_445116
 2020-03-31 2020-05-15
 United States hCoV-19/USA/CA-SR0135/2020
 C241T C1059T C1887T C3037T C14408T C15346T C19269T A23403G G25563T

EPI_ISL_445119
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0264/2020
 C241T AAGTCATTT686- C1059T G2808A C3037T G3582T C14408T A23403G G25563T A26433G

EPI_ISL_445121
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0266/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_445122
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0267/2020
 C241T C1059T C3037T C6285T C14408T A23403G G25563T C27964T

EPI_ISL_445126
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0271/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T T29128C

EPI_ISL_445130
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0275/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27600T C27964T C29730T

EPI_ISL_445131
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0276/2020
 C241T C1059T C3037T C14408T C21629A A23403G G25563T C27964T C29347T ATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATT29684-

EPI_ISL_445134
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0279/2020
 C241T C1059T C3037T G6362A C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_445136
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0281/2020
 C241T C1059T C3037T C10319T C14408T C19586A C21627T A23403G G25563T G26209T C27654T C27964T C29025T

EPI_ISL_445138
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0283/2020
 C241T C1059T C3037T G8131T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_445141
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0286/2020
 C241T C1059T C3037T C14408T T21968C A23403G G25563T C25886T C27964T T29302C

EPI_ISL_445144
 2020-03-31 2020-05-15
 United States hCoV-19/USA/LA-SR0289/2020
 C241T C1059T C3037T C10319T C14408T C19586A C21304A C21627T A23403G G25563T C27964T

EPI_ISL_445177 MT474134
 2020-03-31 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1129/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403R G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_445179 MT474135
 2020-03-31 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1131/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_445226
 2020-03-31 2020-05-15
 Sweden hCoV-19/Sweden/20-06679/2020
 C241T C3037T C14195A C14408T A23403G C25665T

EPI_ISL_445887
 2020-03-31 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2C639/2020
 A1- C241T C3037T C6990T C14408T A23403G C29200T

EPI_ISL_445938
 2020-03-31 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2CA4C/2020
 G1440A G2891A G11083T C14016T G14055T C25669T G26660T G28851T

EPI_ISL_447129
 2020-03-31 2020-05-16
 Belgium hCoV-19/Belgium/ULG-0189/2020
 C241T GTTATG515- A618G C3037T G3994A C5694T C14408T C15324T A23403G

EPI_ISL_447155
 2020-03-31 2020-05-16
 Belgium hCoV-19/Belgium/ULG-10160/2020
 C241T C2113T C3037T C7765T C14408T T15225C C15928T C17690T C18877T A23403G G25563T

EPI_ISL_447384
 2020-03-31 2020-05-17
 Israel hCoV-19/Israel/2047883/2020
 C241T C2416T C3037T C14408T A23403G G25563T C26936T AAAAAAAAAAAA29892-

EPI_ISL_447406
 2020-03-31 2020-05-17
 Israel hCoV-19/Israel/2046129/2020
 C241T C1059T C3037T G7936T C11916T A13500G C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447529
 2020-03-31 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C14408T A23403G G28541T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447531
 2020-03-31 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C16887T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447559
 2020-03-31 2020-05-17
 India hCoV-19/India/CCMB_J048/2020
 ATTAAAGGTTTATACCTT1- C1281T G3243T C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_447560
 2020-03-31 2020-05-17
 India hCoV-19/India/CCMB_J043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447561
 2020-03-31 2020-05-17
 India hCoV-19/India/CCMB_J067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C1707T C5184T C6312A G11083T C13730T C19524T C23929T C28311T

EPI_ISL_447562
 2020-03-31 2020-05-17
 India hCoV-19/India/CCMB_J068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447563
 2020-03-31 2020-05-17
 India hCoV-19/India/CCMB_J057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C6312A C9933T A10888G G11083T A11456T C13730T C14198G C23929T C28311T

EPI_ISL_447754
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUR-1215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T A4393T C14408T A20268G A23403G T23443C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447755
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C5869T C11094T C14408T G15451A A20268G A23403G AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_447756
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C3037T C14408T A20268G A23403G G29734C AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_447757
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C2676T C8782T C11620T C19263T G22186A C26088T T28144C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447759
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C14408T A20268G A23403G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447760
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G A24862G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447762
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T A476G C3037T C10507T G13723T C14408T C18877T A23403G G25563T C27741T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_447763
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GVI-92161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C10507T C14408T C18877T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447765
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G9190T C13730T C14408T C23170T A23403G G25429T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447768
 2020-03-31 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447835 MT459848
 2020-03-31 2020-05-11
 Greece SARS-CoV-2/human/GRC/54_37163/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_447847
 2020-03-31 2020-05-18
 India hCoV-19/India/CCMB_J045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C2701T A6081G C6312A G11083T C13730T C22663A C23929T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447862
 2020-03-31 2020-05-18
 India hCoV-19/India/CCMB_J047/2020
 ATTAAAGGTTTATACCTTCC1- G1820A C6310A C6312A G11083T C13730T C19524T C23929T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_448894
 2020-03-31 2020-05-19
 United Kingdom hCoV-19/England/SHEF-CF094/2020
 C241T C3037T C14408T C19170T G19509A A23403G A25405G G28077T GGG28881AAC

EPI_ISL_450486 MT394530
 2020-03-31 2020-04-27
 United States SARS-CoV-2/human/USA/CA-CZB-59X004/2020
 ATTA1- C9924T C23525Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_450487 MT394531
 2020-03-31 2020-04-27
 United States SARS-CoV-2/human/USA/CA-CZB-59X003/2020
 ATT1- C9924T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_450529
 2020-03-31 2020-05-21
 Poland hCoV-19/Poland/1111112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1204T A1515G G5572T C9223T G11083T G12052A C14805T T17247C C19983T G23678T G26144T CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_450731
 2020-03-31 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C193/2020
 G1440A G2891A G5542A T15665C C28512T

EPI_ISL_450756
 2020-03-31 2020-05-22
 United States hCoV-19/USA/MN-MDH-287/2020
 A1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_450757
 2020-03-31 2020-05-22
 United States hCoV-19/USA/MN-MDH-288/2020
 ATTAAAGG1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_450758
 2020-03-31 2020-05-22
 United States hCoV-19/USA/MN-MDH-289/2020
 AT1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C G29781T G29783T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_450769
 2020-03-31 2020-05-22
 United States hCoV-19/USA/MN-MDH-304/2020
 ATTAAAGGTTTA1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_450800 MT507277
 2020-03-31 2020-05-22
 United States SARS-CoV-2/human/USA/AR-CDC-2072/2020
 C241T C1059T C3037T C7528T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450802 MT507282
 2020-03-31 2020-05-22
 United States SARS-CoV-2/human/USA/PA-CDC-8398/2020
 T490A C3177T C6040T C7321T C8782Y G12478A T18736C C24034T T26729C C26934A G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450808
 2020-03-31 2020-05-22
 Sweden hCoV-19/Sweden/20-06665/2020
 C241T C421T C3037T C14408T A23403G

EPI_ISL_450809
 2020-03-31 2020-05-22
 Sweden hCoV-19/Sweden/20-06695/2020
 C241T C3037T C14408T C15540T A23403G G25785T GGG28881AAC

EPI_ISL_451109
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP072/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_451110
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP073/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451111
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP074/2020
 ATTAA1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451112
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP075/2020
 A1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451113
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP076/2020
 A1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451114
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP077/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451115
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP079/2020
 ATT1- C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_451116
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP080/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451117
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_451122
 2020-03-31 2020-05-23
 Australia hCoV-19/Australia/SAP087/2020
 ATTA1- C241T C3037T C6843T C14408T C17104T A20268G G23282T A23403G C29200T G29734C

EPI_ISL_451165
 2020-03-31 2020-05-23
 Belgium hCoV-19/Belgium/UGent-52/2020
 C241T C3037T C9246T C14408T T19839C A23403G C24099T C28528T GGG28881AAC TACAGTGAACAA29760-

EPI_ISL_451166
 2020-03-31 2020-05-23
 Belgium hCoV-19/Belgium/UGent-53/2020
 C241T C3037T G6109A C14408T C18877T A23403G G25563T

EPI_ISL_451805 LR824368
 2020-03-31 2020-05-25
 Switzerland 101138
 C241T C1059T C3037T A3116G C6648T C14408T G22424R A22489W A23403G G25563T C28472T

EPI_ISL_451806 LR824365
 2020-03-31 2020-05-25
 Switzerland 101139
 C241T C3037T C14408T G17014T A20268G C22350M T22397W T22516W A23403G G28368A C28854T

EPI_ISL_451807 LR824370
 2020-03-31 2020-05-25
 Switzerland 101140
 C241T C3037T C5239Y C5672T C14408T C17802T A23403G G25429T

EPI_ISL_451809 LR824369
 2020-03-31 2020-05-25
 Switzerland 101142
 G152R C241T C1426Y C3037T T5611Y T5674Y TT5712YY T5740Y T5941W G7850R T8859K A9717R T10076W G11087R C11812M AA12263RR AA12272RR A12299R A12377R A12405R C12638M C14408T C15324T T17603K C17801Y C20451Y C22347S C23103Y C23328M A23403G G26450T A27784W

EPI_ISL_451810 LR824371
 2020-03-31 2020-05-25
 Switzerland 101143
 T221Y C241T C355Y G1167K A1367W T2820Y AG3003WK C3037T AA3180WW C3686A G5629K T6274W C6664Y T7153Y A7163R T7274W C7279Y G8131K T8235K G8346K G8498K T10792K T10942W C11036Y T12055Y C12576Y C14178Y C14408T C14645Y T14709K C14913Y C15324T C16611Y G17964K T19187Y G21186R G21193K C21327Y C21691T C22062Y T22516W A23403G C23859Y T24364Y C25791Y G26199K CA29187YR C29679Y

EPI_ISL_451812 LR824378
 2020-03-31 2020-05-25
 Switzerland 101145
 C241T C1059T C3037T C7267Y C10604T C14408T C19402Y A19426W A23403G G25563T

EPI_ISL_451813 LR824383
 2020-03-31 2020-05-25
 Switzerland 101146
 C241T C3037T C4543Y C14408T C15324T C19343Y G19490K A19548R A23403G G29262T C29509T

EPI_ISL_451817 LR824379
 2020-03-31 2020-05-25
 Switzerland 101150
 C241T C3037T A5257W C7735T A8223R G13571K C14408T C15324T A19298W T19332Y G22380K A23403G C26885Y

EPI_ISL_451821 LR824381
 2020-03-31 2020-05-25
 Switzerland 101155
 C241T C3037T C4886M G7273K T7305K C14408T C15324T A16210W A19298W T19372Y T19378W T19475W A23403G

EPI_ISL_451822 LR824391
 2020-03-31 2020-05-25
 Switzerland 101156
 C241T C313T C3037T C9246Y C14408T C22347S A23403G GGG28881AAC

EPI_ISL_451824 LR824385
 2020-03-31 2020-05-25
 Switzerland 101158
 C241T C1059T C3037T A3116G C14408T A19298W G19423R T19432Y G19518K G22381K G22462R A22474M T22516W A23403G G25563T G28300R

EPI_ISL_451826 LR824390
 2020-03-31 2020-05-25
 Switzerland 101160
 C241T C1469S T1531Y A1982W C3037T C3656Y T5059Y A6911W C9891Y G14371K C14408T C15324T G16975S A19307R C19360M T19503Y C21871Y C22347S T22516W G22652K T22756Y A23403G C24223Y C24382T C26752Y G28968S G29239K A29567R

EPI_ISL_451829 LR824386
 2020-03-31 2020-05-25
 Switzerland 101165
 C241T C3037T C14408T C15324T G19446K G19478K G22409R A23403G T23489C

EPI_ISL_451832 LR824400
 2020-03-31 2020-05-25
 Switzerland 101168
 C241T C3037T C14408T C15324T T22516W A23403G G26152R G28073K G28198K

EPI_ISL_451833 LR824395
 2020-03-31 2020-05-25
 Switzerland 101170
 C241T C346T C3037T C6628Y C14408T A19298W C22264Y T22516W A23403G

EPI_ISL_451834 LR824392
 2020-03-31 2020-05-25
 Switzerland 101171
 C241T C3037T T3477Y C4158Y C9967T C14408T C15324T T22516W A23403G

EPI_ISL_451835 LR824393
 2020-03-31 2020-05-25
 Switzerland 101172
 A30W C241T C635Y C3037T G4727S C6941Y G8522K T10003K G10105S C14408T G16013K G20170K C20178Y A20180M G21228S C22347S T22433K G22462K T22516W A23403G GGG28881AAC G29540T A29552R

EPI_ISL_451837 LR824398
 2020-03-31 2020-05-25
 Switzerland 101174
 C241T C280T C1059T C3037T A3116G A3660C C14408T T19503Y A19540R C19545M T22357Y A23403G G25563T G28881R

EPI_ISL_451839 LR824402
 2020-03-31 2020-05-25
 Switzerland 101177
 C241T C3037T C14408T A19298W T19479W T22514Y A23403G

EPI_ISL_451840 LR824404
 2020-03-31 2020-05-25
 Switzerland 101178
 C241T G768K G840S T1863Y C3037T A3934R T4031Y A4244R A4659R A4762R G5399S G5437K A5541R G5605R C6145Y G6622R T7605Y C10537Y C10802M TG11092YS G12067K G12382K G13202S A13396R C14408T C15540Y G15913K C16057Y G17019R A19650R C20863Y T21790Y G22218S A22407M A22474M T22516W C22747Y T23338K C23399Y A23403G A24037R G24291S G25459K T25478Y T27053Y T27308Y A27333M GGG28881AAC G29134K G29560K C29640Y A29694W T29748K T29826K

EPI_ISL_451843 LR824405
 2020-03-31 2020-05-25
 Switzerland 101181
 C241T C3037T G5037R A5257W C14408T C15324T C15738T A19298W G19486R T21223W T21471Y A21489M C21658M A23403G

EPI_ISL_451844 LR824409
 2020-03-31 2020-05-25
 Switzerland 101182
 C241T G1126K C1973M G2001K C3037T G3638R G3815K G4288K G4504S G4963S A5064W G6060S G6642K G6879K T7084W T9229Y G10618K G10643R G10870K A10973R G12613S C12621Y G12838R G12930R C14408T G14948K C15324T C16551Y C16922Y C19322M A19754M C19983Y G20274K C20972Y C21005Y C22347S T22479Y T22516W G23067R C23360Y A23403G C23609Y G24959R G25212K T27733K

EPI_ISL_451848 LR824401
 2020-03-31 2020-05-25
 Switzerland 101186
 C241T C1059T C3037T A3116G C14408T C19269T G19406R A19409R T22367K A22415M A23403G G25563T C29774A

EPI_ISL_451852 LR824413
 2020-03-31 2020-05-25
 Switzerland 101190
 C241T T627K G1401K T1651Y G1730R AA1903WW A2317W C2607Y C3037T T3982Y C4002Y A5177R G5605R C5866Y T6605Y C6696Y A7184R T11635Y G11722K T11798Y A14007R C14327M C14408T C14524Y T14704Y C15324T T15926Y T15996Y T16029Y T16059Y T16090Y T16103Y T16147Y T16155Y T16167Y T16258K C16883Y T19473Y G20160K C22347M A22956R T23113Y A23403G G24040K T24475K T25272Y G25522K T25556Y T27318W

EPI_ISL_451853 LR824412
 2020-03-31 2020-05-25
 Switzerland 101191
 C241T C3037T G13567A C14408T A19459R A19548R C21575Y A23403G GGG28881AAC

EPI_ISL_451854 LR824414
 2020-03-31 2020-05-25
 Switzerland 101192
 C241T C3037T C14408T C15324T C17326T C18029Y G19312K G19327K T19485W A19535W A19548R A23403G G25244T G28690T G28985R G29543K

EPI_ISL_451855 LR824419
 2020-03-31 2020-05-25
 Switzerland 101193
 C241T T580K C1059T T1532Y C3037T G3470R C3884Y G5233R T5928W G6553S G7289S T9340W C9866M C9907Y C10202Y C10209Y G11743K T11791W G12844R T13632W A13871R T14027Y C14408T C14657Y T16553Y A16672W G16943S G18367K T19344Y G19990S C20148Y G20160R G20171R A20386W A21345W C21575Y G22094K G22409K G22421K T22449K A23403G G24154K T25414C G25563T C25976M T26345Y C27577Y G28077K T28424Y

EPI_ISL_451973 MT511068
 2020-03-31 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P12/2020
 C19T C106T C241T C3037T C8025T A8072G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_451975 MT511070
 2020-03-31 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P14/2020
 C19T C106T C241T C3037T A8072G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_451979 MT511074
 2020-03-31 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P18/2020
 C241T C3037T C14408T G14580T A23403G G29477T C29870M

EPI_ISL_452187
 2020-03-31 2020-05-27
 Italy hCoV-19/Italy/VR_20COV31-18/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452188
 2020-03-31 2020-05-27
 Italy hCoV-19/Italy/VR_20COV31-19/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC C29311T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_453939
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G T24364C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453942
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T C4090T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453943
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T C4090T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453944
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T G3719A C14408T A22359G A23403G G24077T T28705C C29555T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_453946
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3045T C3140T C14408T A23403G G24077T C29555T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_453947
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T C14408T A23403G G24077T T28705C C29555T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_453951
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C3140T C14408T G21761T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453958
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454154
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C1059T C3037T C14408T G20560A G22201T A23403G G25217T G25563T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454208
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C14408T G22104T A23403G A24862G CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454350
 2020-03-31 2020-05-28
 Portugal hCoV-19/Portugal/PT0627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C593T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454356
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL66/2020
 C241T C3037T A4595G C14408T T19839C A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454368
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL84/2020
 C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454372
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL89/2020
 C241T C1059T C3037T C14408T C15319T C21638T A23403G G25563T C29466T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454373
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL91/2020
 C241T C745T C1059T C3037T C11916T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454376
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL96/2020
 C241T C3037T C14408T G16975T A23403G T27299C A27486G GGG28881AAC T29148C GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454378
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL98/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454382
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL103/2020
 C241T C1059T C3037T C12809T C14408T A23403G G25563T C26625T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454383
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL104/2020
 C241T C1059T C3037T C6997T C14408T A23403G G23608T G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454384
 2020-03-31 2020-05-28
 United States hCoV-19/USA/PA-MGEL107/2020
 T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454565
 2020-03-31 2020-05-28
 India hCoV-19/India/NIV-QA-710/2020
 C241T C3037T G8371T C14408T A23403G GGG28881AAC A29827T G29830T

EPI_ISL_454605
 2020-03-31 2020-05-28
 Croatia hCoV-19/Croatia/8U-S17new/2020
 C241T C1059T C3037T G10091A C14408T A23403G G25563T C27367T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_454793
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10044/2020
 ATTA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC AAAAAA29898-

EPI_ISL_455100
 2020-03-31 2020-05-29
 Sweden hCoV-19/Sweden/20-06761/2020
 C241T C3037T C14408T A23403G C27769T GGG28881AAC

EPI_ISL_455112
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/Flevoland_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3234G T7020G T13006C C14408T C20964T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455114
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T G28086T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455115
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T A6371G C6738T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455116
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1959T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455117
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C7002T C11109T T12319A C13115T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455118
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A513G C3037T G4649T C14408T C21627T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455196
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G T26187C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455222
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T AAGTCATTT686- C3037T G6337A G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455280
 2020-03-31 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C28826T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455636
 2020-03-31 2020-06-01
 South Africa hCoV-19/SouthAfrica/KRISP-106/2020
 C241T C3037T C14408T C16376T A23403G C24034T

EPI_ISL_455639
 2020-03-31 2020-06-01
 South Africa hCoV-19/SouthAfrica/KRISP-109/2020
 C241T C3037T A8449C C13115T C14408T C20234T A23403G GGG28881AAC

EPI_ISL_455641
 2020-03-31 2020-06-01
 India hCoV-19/India/S7/2020
 C6310A C6312A G11083T T12757C C13730T C19524T C23929T C28311T

EPI_ISL_455704
 2020-03-31 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_3916/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC C28905T

EPI_ISL_455705
 2020-03-31 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_3913/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC C28905T

EPI_ISL_455727
 2020-03-31 2020-06-01
 Spain hCoV-19/Spain/Gandia661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G C29144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_456287
 2020-03-31 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1860/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456292
 2020-03-31 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1867/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456308
 2020-03-31 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1917/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456955
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5051/2020
 C241T C3037T T7216C C14408T C16468T A23403G G25012T GGG28881AAC

EPI_ISL_457013
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB554/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_457052
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/England/EXET-135371/2020
 C241T C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457089
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/England/EXET-1356F0/2020
 G11083T G13998T C14805T T17247C G26144T G28975T

EPI_ISL_457101
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/England/EXET-1357EE/2020
 C241T C3037T C14322T C14408T A20268G A23403G

EPI_ISL_457126
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/England/EXET-135A12/2020
 C3037T C14408T A20268G A23403G

EPI_ISL_457139
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/England/EXET-135B88/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_457150
 2020-03-31 2020-06-02
 United Kingdom hCoV-19/England/EXET-135C76/2020
 C241T C3037T C8386T C14408T C22227T C22295T A23403G GGG28881AAC

EPI_ISL_458233
 2020-03-31 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0331263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458234
 2020-03-31 2020-06-04
 Belgium hCoV-19/Belgium/Rega-0331264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C3037T A11762G A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458448
 2020-03-31 2020-06-04
 United Kingdom hCoV-19/England/BRIS-1298CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458455
 2020-03-31 2020-06-04
 United Kingdom hCoV-19/England/BRIS-12989F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20790T A23014G A23403G T27222C C28332M GGG28881AAC C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458605
 2020-03-31 2020-06-04
 United Kingdom hCoV-19/England/NORT-289744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22093A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458635
 2020-03-31 2020-06-04
 United Kingdom hCoV-19/England/NORT-289717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3475C C14408T C14786T A23403G T26130C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460012
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20473/2020
 C241T C1059T C3037T C11497T C14408T A23403G G25563T

EPI_ISL_460017
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20478/2020
 C241T C1059T C3037T C6573T C14408T A23403G G25563T C27476Y

EPI_ISL_460018
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20479/2020
 C241T C1059T C3037T TT7156AC G7160C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_460020
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20481/2020
 C241T G932K C1059T C3037T C14408T A20138G A23403G G25563T

EPI_ISL_460021
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20482/2020
 C241T C1059T C3037T C14408T A23403G T24832C G25563T

EPI_ISL_460025
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20486/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25976A

EPI_ISL_460026
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20487/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25976A AAAAAAA29897-

EPI_ISL_460028
 2020-03-31 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20489/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAA29901-

EPI_ISL_460625
 2020-03-31 2020-06-06
 United States hCoV-19/USA/WA-UW-4570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C8782T C17747T A17858G C18060T TTA21991- CTTGCTCTTCTGGAACATACGAGGGCAATTCACCATTTCATCCTCTAGCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAGACAGAATGATTGAACTTTCATTAATTGACTTCTATTTGTGCTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATTATGCTTATTATCTTTTGGTTCTCACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCT27494- T28144C GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_460675
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G C24865T C26125T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461076
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23709T A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461077
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23709T A24036G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461078
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23709T A24862G C28005T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461079
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23709T A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461082
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23709T A24036G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461128
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10870T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461164
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461250
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A25383G A26530G C28546T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461261
 2020-03-31 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G C24865T C26125T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461423
 2020-03-31 2020-06-06
 United States hCoV-19/USA/WA-UW-4117/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T T85C C241T C1059T C3037T C14408T T21146A A23403G G25563T G29553A -29904AAAAAAAAAAAAAA

EPI_ISL_461443 MT683405
 2020-03-31 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-5812/2020
 ATTAAAGGTT1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T CACCATTTCATCCTCTAGCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAG27524- G29553A A29903-

EPI_ISL_461444
 2020-03-31 2020-06-06
 United States hCoV-19/USA/WA-UW-5847/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_461445 MT683406
 2020-03-31 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-5860/2020
 ATTAAA1- C36T C913T C5784T C8782T C9836T C17747T A17858G C18060T A22036C T28144C G28221C C28344T G29864A TG29867AA C29870A

EPI_ISL_461733
 2020-03-31 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5381/2020
 C241T C2841T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_461761
 2020-03-31 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB608/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_462150
 2020-03-31 2020-06-07
 Russia hCoV-19/Russia/CRIE162784/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C3373A C6883T C14408T G21724A A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_462213
 2020-03-31 2020-06-08
 Belgium hCoV-19/Belgium/BS-0331359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462214
 2020-03-31 2020-06-08
 Belgium hCoV-19/Belgium/SN-0331360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462215
 2020-03-31 2020-06-08
 Belgium hCoV-19/Belgium/BS-0331361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G11083T C14805T T17247C G26144T A29598G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462216
 2020-03-31 2020-06-08
 Belgium hCoV-19/Belgium/BD0331362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A16992G T18495C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462231
 2020-03-31 2020-06-08
 Belgium hCoV-19/Belgium/LL-0331377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12769T C14408T T23287C A23403G A23870G C27532T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462232
 2020-03-31 2020-06-08
 Belgium hCoV-19/Belgium/SC-0331378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15380T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462233
 2020-03-31 2020-06-08
 Belgium hCoV-19/Belgium/VPP-0331379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T A3269C C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462350
 2020-03-31 2020-06-08
 Singapore hCoV-19/Singapore/232/2020
 T490A C3177T C8782T T18736C G19684T T21955Y C24034T T26729C C27635T G28077C T28144C A29700R AAAAAAAAAAAA29892-

EPI_ISL_463006 MT499220
 2020-03-31 2020-05-20
 Tunisia SARS-CoV-2/human/TUN/COV1482/2020
 ATTAAAGGTTTA1- T17C C241T C1059T T1666C C3037T C14408T A23403G G25563T GG28346TT T29811C A29813G T29817G T29822C A29824C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_463940
 2020-03-31 2020-06-11
 Canada hCoV-19/Canada/QC_AT3/2020
 C241T C3037T A7040G C14408T C15324T A23403G C25433T

EPI_ISL_465922
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20142015404/2020
 C241T C3037T C14408T A23403G G28851T GGG28881AAC C29870M

EPI_ISL_465971
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144000104/2020
 C241T C3037T C4002T G10097A C13536T C14184T C14408T C15738Y C21058T A23403G C23731T GGG28881AAC

EPI_ISL_465973
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144003904/2020
 G11083T A11782G C14805T T17247C G26144T

EPI_ISL_465975
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144009404/2020
 C241T C3037T C14408T C18681T C20199T G21204T A23403G C28657Y GGG28881AAC

EPI_ISL_465999
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144037104/2020
 A2480G C2558T C7011T G11083T G11405A C14805T G26144T C28869T A29871G

EPI_ISL_466000
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144037904/2020
 C241T C313T C3037T C14408T A23403G C25844Y G27382T GGG28881AAC

EPI_ISL_466001
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144050404/2020
 C241T C3037T G10097A T13216G C14408T C18486T C21233T A23403G C23731T G25647T GGG28881AAC

EPI_ISL_466002
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144052804/2020
 C241T C1059T C3037T G3692T C11575T C14408T G16065T A23403G G25563T C25919Y A29782R

EPI_ISL_466003
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20144057404/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29868R

EPI_ISL_466030
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20146013904/2020
 C241T C3037T C4002T G10097A C13536T C14408T G22487C G22763K A23403G C23731T GGG28881AAC

EPI_ISL_466040
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20146021204/2020
 G11083T C14805T T17247C G26144T C26447T

EPI_ISL_466054
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20148032904/2020
 G105T C241T C3037T C14408T A23403G C28720T

EPI_ISL_466113
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20149005904/2020
 C241T C635T C3037T C14408T A23403G C25350T

EPI_ISL_466122
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20149006904/2020
 C241T G246T C3037T C5173T C14408T G17280C G21776T A23403G GGG28881AAC

EPI_ISL_466129
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20149007604/2020
 C241T C1059T C1437T C3037T A6431G T13006C C14408T A23403G G25563T C25688T G29374A

EPI_ISL_466146
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20149009404/2020
 C241T C3037T G11391K G11405K C14408T G20709K C22617Y A23403G GGG28881AAC

EPI_ISL_466149
 2020-03-31 2020-06-11
 United Kingdom hCoV-19/England/20149009704/2020
 C241T C3037T C14408T T15930K A23403G GGG28881AAC

EPI_ISL_467774
 2020-03-31 2020-06-15
 Russia hCoV-19/Russia/CRIE163844/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T G8371T C14408T C18570T A23403G G25563T AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_468006
 2020-03-31 2020-06-16
 Australia hCoV-19/Australia/SAP302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C4540T C8782T T9477A C14805T A17758G G25979T T28144C C28311T C28657T C28863T A29598G

EPI_ISL_468035
 2020-03-31 2020-06-16
 Australia hCoV-19/Australia/SAP285/2020
 ATTAAAG1- C241T C3037T C14408T C18570T A23403G C24418T GGG28881AAC

EPI_ISL_468041
 2020-03-31 2020-06-16
 Australia hCoV-19/Australia/SAP012/2020
 C241T C3037T C6843T C14408T C17104T A20268G G23282T A23403G C29200T G29734C

EPI_ISL_468043
 2020-03-31 2020-06-16
 Australia hCoV-19/Australia/SAP268/2020
 G1440A G2891A C28868T

EPI_ISL_468528 MT628251
 2020-03-31 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C4055Y C8782T C10416T G11083K C17747T A17858G C18060T G27157K T28144C

EPI_ISL_469103
 2020-03-31 2020-06-17
 Singapore hCoV-19/Singapore/348/2020
 C6310A C6312A C10450Y G11083T C13730T A14199R C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_469104
 2020-03-31 2020-06-17
 Singapore hCoV-19/Singapore/349/2020
 C6310A C6312A G8706K G11083T C13730T C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_469121
 2020-03-31 2020-06-17
 Singapore hCoV-19/Singapore/366/2020
 C33M C6310A C6312A G11083T C13730T C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_469279
 2020-03-31 2020-06-18
 United Arab Emirates hCoV-19/United Arab Emirates/L5857/2020
 C884T G1397A A3078G G8653T G11083T A19073G G27915T T28688C C28868T C29077T G29742T

EPI_ISL_469577
 2020-03-31 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12758B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13765K C14408T A23403G GGG28881AAC C29420T TAGTA29823- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469950
 2020-03-31 2020-06-18
 United Kingdom hCoV-19/Scotland/GCVR-1720BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C22624T C25000T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470830
 2020-03-31 2020-06-19
 Australia hCoV-19/Australia/WA12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471266
 2020-03-31 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T C18646T A24694T T26906C T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471456
 2020-03-31 2020-06-22
 Morocco hCoV-19/Morocco/HMIMV-Rabat102-03/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1684T C3037T G6404T C8208T C14408T C15324T G21578T G22363T A23403G C29362T AGGAGAATGA29860- A29886G AAAAAAAAA29895-

EPI_ISL_471959
 2020-03-31 2020-06-23
 United Kingdom hCoV-19/England/EXET-1372CD/2020
 C241T C3037T C14408T A23403G C23520T G25429T C25916T C26060T

EPI_ISL_475116
 2020-03-31 2020-06-23
 Sweden hCoV-19/Sweden/20-08722/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_475146
 2020-03-31 2020-06-23
 Sweden hCoV-19/Sweden/20-50552/2020
 C241T C1059T A1399G C3037T G7936T C14408T G20002T A23403G G25563T

EPI_ISL_475147
 2020-03-31 2020-06-23
 Sweden hCoV-19/Sweden/20-50556/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475279
 2020-03-31 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0D6A/2020
 C241T C3037T C14408T G16068C A23403G C25350T

EPI_ISL_475280
 2020-03-31 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0D79/2020
 C1457T A2480G C2558T T11077C G11083T C14805T C18744T G26144T T27384C

EPI_ISL_475285
 2020-03-31 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0DC4/2020
 C241T C3037T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_475289
 2020-03-31 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0E0D/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_475297
 2020-03-31 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0E85/2020
 C241T C3037T C14408T A23403G G25429T C25710T C25916T C29614T

EPI_ISL_475299
 2020-03-31 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0EA3/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_475656
 2020-03-31 2020-06-23
 United States hCoV-19/USA/CA-CSMC44/2020
 C241T C379A C1059T C1594T C3037T A10982C C14408T A23403G G25563T G28827T

EPI_ISL_475657
 2020-03-31 2020-06-23
 United States hCoV-19/USA/CA-CSMC45/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_475792
 2020-03-31 2020-06-25
 Austria hCoV-19/Austria/CeMM0321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26461T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475822
 2020-03-31 2020-06-25
 Austria hCoV-19/Austria/CeMM0379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T A11839G C14408T C16575T T19839C A23403G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475823
 2020-03-31 2020-06-25
 Austria hCoV-19/Austria/CeMM0380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T A11839G C14408T C16575T T19839C A23403G G26428K GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475893
 2020-03-31 2020-06-25
 Austria hCoV-19/Austria/CeMM0521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3264T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475911
 2020-03-31 2020-06-25
 Austria hCoV-19/Austria/CeMM0560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475914
 2020-03-31 2020-06-25
 Austria hCoV-19/Austria/CeMM0564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476023
 2020-03-31 2020-06-25
 India hCoV-19/India/DRDE115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C6312A T11045C A14351G C19675A T25633C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477706
 2020-03-31 2020-06-29
 United States hCoV-19/USA/WA-UW-2270/2020
 ATTAAAGGTTTAT1- A14W C19T CAGGTAACAAACCAACC21- C241T C1059T C3037T C9195T C14408T A23403G G25563T T27553C G29553A -29904AAAA

EPI_ISL_478417
 2020-03-31 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6C87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2937T C3037T C14408T A20268G A23403G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478418
 2020-03-31 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6C96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478419
 2020-03-31 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6CA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478420
 2020-03-31 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6CB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3234G T4946G C14408T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478421
 2020-03-31 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6CC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478422
 2020-03-31 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6CD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C13487T C14408T C14786T G20578T A23403G G25563T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_479620
 2020-03-31 2020-06-30
 Russia hCoV-19/Russia/CRIE182061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C2509T C3037T C3903T T12877C C14408T A23403G C24863T GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_479621
 2020-03-31 2020-06-30
 Russia hCoV-19/Russia/CRIE161454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_479622
 2020-03-31 2020-06-30
 Russia hCoV-19/Russia/CRIE164776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C2416T C3037T G8371T C14408T C18570T A23403G G25563T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_479648
 2020-03-31 2020-07-01
 Canada hCoV-19/Canada/NB-235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C289T C1059T C3037T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479649
 2020-03-31 2020-07-01
 Canada hCoV-19/Canada/NB-235/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C289T C1059T C3037T C14408T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_479650
 2020-03-31 2020-07-01
 Canada hCoV-19/Canada/NB-237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC A29406G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_480009
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_480026
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T C14408T C21034T A23403G GGG28881AAC G29734T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480027
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C14408T G20238T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480028
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T C14697T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480067
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G26730A GGG28881AAC G28980T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480081
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480125
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_480128
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_480129
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480199
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480200
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A20268G A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480201
 2020-03-31 2020-07-01
 Japan hCoV-19/Japan/PG-0545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C8016T C14408T T16374C A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480391 MT772558
 2020-03-31 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C12729T A18812G C22295T T25865C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480392 MT772559
 2020-03-31 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T A29725G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480783
 2020-03-31 2020-07-02
 Senegal hCoV-19/Senegal/1683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C12559T C14408T C15324T A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480787
 2020-03-31 2020-07-02
 Senegal hCoV-19/Senegal/1749/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_481265 MT704119
 2020-03-31 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0016/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_481744
 2020-03-31 2020-07-03
 Canada hCoV-19/Canada/NB_246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2559Y C8782T T10771C C17747T A17858G C18060T T28144C ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_481745
 2020-03-31 2020-07-03
 Canada hCoV-19/Canada/NB_247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482298
 2020-03-31 2020-07-03
 United States hCoV-19/USA/OR-PROV-011/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_482299
 2020-03-31 2020-07-03
 United States hCoV-19/USA/OR-PROV-012/2020
 C8782T C16173T C17747T A17858G C18060T T28144C

EPI_ISL_482300
 2020-03-31 2020-07-03
 United States hCoV-19/USA/OR-PROV-013/2020
 C241T C1059T C3037T G8828A C14408T A23403G G25302T G25563T C29750T

EPI_ISL_483086
 2020-03-31 2020-07-07
 Australia hCoV-19/Australia/SAP279/2020
 ATTA1- C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_483091
 2020-03-31 2020-07-07
 Australia hCoV-19/Australia/SAP306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_483167
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0477-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_483171
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0483-SAN/2020
 C241T C1059T C3037T G4504A C14408T A23403G G25563T

EPI_ISL_483172
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0484-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C988T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483179
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0494-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G431A C1059T G2600A C3037T C7119T C14408T A23403G G25563T T27634C

EPI_ISL_483189
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0506-SAN/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C6629T C14408T C23277T A23403G G25563T

EPI_ISL_483190
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0508-SAN/2020
 C241T C1059T C3037T C14408T C18115T C18377T A23403G A25182C G25563T

EPI_ISL_483317
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0709-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C13487T C14408T C16762T A23403G G25563T C26885T A29112T

EPI_ISL_483368
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0801-SAN/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483370
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0803-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C988T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483376
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0813-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_483386
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0830-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G431A C1059T G2600A C3037T C7119T C14408T A23403G G25563T T27634C

EPI_ISL_483388
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0832-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_483392
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0837-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T

EPI_ISL_483434
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0975-SAN/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C13487T C14408T C16762T A23403G G25563T C26885T A29112T

EPI_ISL_483439
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0980-SAN/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T G4504A C14408T A23403G G25563T

EPI_ISL_483441
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0982-SAN/2020
 ATTA1- C241T C1059T C3037T A3938C T8996G C14408T G17014T A23403G G25563T G26769T

EPI_ISL_483447
 2020-03-31 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0991-SAN/2020
 ATTA1- C241T C1059T C3037T C6629T C14408T C23277T A23403G G25563T

EPI_ISL_484169
 2020-03-31 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265E1F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G14580T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484170
 2020-03-31 2020-07-08
 United Kingdom hCoV-19/England/GSTT-265E201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G18255T G25297A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484415
 2020-03-31 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D1613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G A3003T C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484416
 2020-03-31 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D1631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484417
 2020-03-31 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D1640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484710
 2020-03-31 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G386A T490A G922A C999T C3177T C8782T T18736C C24034T T26729C TC27672AA G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484713
 2020-03-31 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1911T C3037T C14408T T17598C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484718
 2020-03-31 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6496C C14408T A23403G G25563T T26159C A27338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484723
 2020-03-31 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5986T C14408T C16470T A23403G G25563T C26645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484762
 2020-03-31 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S000934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6905G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484794
 2020-03-31 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S001036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6638T C14408T A23403G C23613T G25563T G28378T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485987
 2020-03-31 2020-07-10
 United States hCoV-19/USA/WA-UW-2369/2020
 ATTAAAGGTTTAT1- AAC34TTT C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486820
 2020-03-31 2020-07-10
 Russia hCoV-19/Russia/CRIE161143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T T22297C A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486821
 2020-03-31 2020-07-10
 Russia hCoV-19/Russia/CRIE162398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C3373A C6883T C14408T G21724A A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486822
 2020-03-31 2020-07-10
 Russia hCoV-19/Russia/CRIE164298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T A1331G C3037T T8458C C14408T A23403G G25793A GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486823
 2020-03-31 2020-07-10
 Russia hCoV-19/Russia/CRIE164399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A18085G A23403G GG28881AA CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486824
 2020-03-31 2020-07-10
 Russia hCoV-19/Russia/CRIE164980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C3373A C6696T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486825
 2020-03-31 2020-07-10
 Russia hCoV-19/Russia/CRIE168693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486826
 2020-03-31 2020-07-10
 Russia hCoV-19/Russia/CRIE170180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_487684
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487710
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C3411Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487812
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487817
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T C28310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487991
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21861C A23403G C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488465
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2955F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488477
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T C16247Y T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488488
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2954C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11530T A13190R C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488496
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T C17125Y T17247C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488523
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-29550F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083K C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488529
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2837FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T T25202K G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488531
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2958AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350W A2480R C2558Y C3702Y C11074Y G11083T C14805T G24821K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488537
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27750T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488539
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-283759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T A2480G C2558T G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488540
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-29560C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488545
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2952AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A18518R A21717T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488558
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2955A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410Y T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488559
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2835B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A20465R A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488566
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2955C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11530Y C14408T A23403G C25350Y G27750K C29835Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488569
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2830B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6990T C14408T A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488604
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-29552D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037Y G11083T C14408Y C14805Y A20268G G22225K A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488607
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488625
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488645
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2832D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C2028T A14457G T25202K G25500T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488649
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2954B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11530T A13190R C14408T A23403G T25202K C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488660
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-283197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488665
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G G27014K GGG28881AAC G29227A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488668
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488672
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-29548A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488696
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-29555A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3308R G11083K C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488702
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-295156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A19960G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488703
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2957DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T T25202K G28198T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488709
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-29561B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488712
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-2953AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G T25202K GGG28881AAC G29227A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488741
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/England/NORT-28314C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C13876Y C14805T T16154C T17247C C18747T G20125A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488902
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T83C C241T C3037T C10798A C13862T C14408T G21986A A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488909
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21861C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488918
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T G19009T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488940
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488961
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488965
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T T4195C G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488970
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5907T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488995
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489016
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T C10582T C14408T A20262R G20756K A23403G G25563T C28310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489025
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489028
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489041
 2020-03-31 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6578T C14408T C18348T A23403G AAATTG26096- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490058
 2020-03-31 2020-07-15
 Singapore hCoV-19/Singapore/608/2020
 C6310A C6312A C10301M G11083T C13730T G16405K C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_491462
 2020-03-31 2020-07-17
 Peru hCoV-19/Peru/INS-040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491464
 2020-03-31 2020-07-17
 Peru hCoV-19/Peru/INS-039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C8782T T12364A A19719T C26088T T27308Y T28144C ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491574
 2020-03-31 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491920 MT776414
 2020-03-31 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10874G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492285
 2020-03-31 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18530B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6380T C6573T C8655T C13971T C14408T G14999A A23403G C25521A C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492341
 2020-03-31 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18530C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C8655T C14408T G18972T A23403G C25521A C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493062
 2020-03-31 2020-07-20
 United States hCoV-19/USA/WY-WYPHL-20006987/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T A23403G G25563T C29370Y G29553A

EPI_ISL_494209
 2020-03-31 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1681B7/2020
 ATTAAAGGTTTA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC G29041K

EPI_ISL_494231
 2020-03-31 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T G11083T C14805T C14931T G16285T C17876T G26144T C29659Y AAAAAAAAAAAAAAA29889-

EPI_ISL_494572
 2020-03-31 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T C3885T G4657A C14408T A19453C G21578T A23403G G25563T

EPI_ISL_498159
 2020-03-31 2020-07-27
 Colombia hCoV-19/Colombia/89002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498160
 2020-03-31 2020-07-27
 Colombia hCoV-19/Colombia/89781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498166
 2020-03-31 2020-07-27
 Colombia hCoV-19/Colombia/95839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G27261T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499433
 2020-03-31 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169356/2020
 ATT1- C241T G701T C3037T C14408T A23403G

EPI_ISL_500456
 2020-03-31 2020-07-28
 Spain hCoV-19/Spain/COV006026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T13006C C14408T G16065R G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_501206
 2020-03-31 2020-07-31
 Malaysia hCoV-19/Malaysia/3605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- T3017C A6502G G11083T C14805T G26144T G28842T

EPI_ISL_501207
 2020-03-31 2020-07-31
 Malaysia hCoV-19/Malaysia/3611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G11083T C14408T A23403G C26461T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501208
 2020-03-31 2020-07-31
 Malaysia hCoV-19/Malaysia/3703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C2880T C6312A T7621C G11083T C13730T C21627T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501209
 2020-03-31 2020-07-31
 Malaysia hCoV-19/Malaysia/3706/2020
 ATTAAAGGTTTATACCT1- C6312A T7621C G11083T C13730T C21627T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_507079
 2020-03-31 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D2C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_507080
 2020-03-31 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D2DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_507884
 2020-03-31 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T G4720A C14408T A23403G G25563T C28076T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507921
 2020-03-31 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C1059T C3037T T12619C C14408T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_507922
 2020-03-31 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G11083T C14408T C17474T C18877T A23403G G25563T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_508368
 2020-03-31 2020-08-04
 India hCoV-19/India/IK4/2020
 C241T C3037T C14408T A23403G G29868A

EPI_ISL_508376
 2020-03-31 2020-08-04
 India hCoV-19/India/IK5/2020
 C241T C3037T C12781T C14408T A23403G G29868A

EPI_ISL_508745 MT834652
 2020-03-31 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0542/2020
 ATTAA1- C241T C751T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_508746 MT834653
 2020-03-31 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0543/2020
 AT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508749 MT834656
 2020-03-31 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0546/2020
 ATTA1- C241T C751T C1059T C1191T C3037T A6035G C10319T C14408T G17014T A23403G G25563T C27964T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_508959
 2020-03-31 2020-08-04
 France hCoV-19/France/ARA17330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTG1- C241T C1059T C3037T C14408T A23403G G25563T C29585T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508960
 2020-03-31 2020-08-04
 France hCoV-19/France/ARA17747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C14408T A23403G G28812A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509011
 2020-03-31 2020-08-04
 France hCoV-19/France/ARA17037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T C23277T A23403G T23857C G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509013
 2020-03-31 2020-08-04
 France hCoV-19/France/ARA17410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509014
 2020-03-31 2020-08-04
 France hCoV-19/France/ARA17573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T C15324T A23403G C28253T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_509769 MT846473
 2020-03-31 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0711/2020
 A1- C241T C1059T C1917T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509772 MT846476
 2020-03-31 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0714/2020
 AT1- T490A C3177T C8782T C14396T T18736C C21811T C24034T T26729C C27635T G28077C T28144C A29700G C29739T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_509773 MT846477
 2020-03-31 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0715/2020
 AT1- C241T C1059T C1917T C3037T T8278C C14408T C16997T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509774 MT846478
 2020-03-31 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C601T C3037T C8389T C14408T A23403G G25563T G27915A G27996T AAAA29900-

EPI_ISL_510912
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT0651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1594T C3037T C3140T C14408T A23403G G24077T C28462A C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510927
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT0668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3653T C14408T C21242T GCTTTA22289- A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511192
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4474T A14406G C14408T C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511193
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G4474T A14406G C14408T C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511194
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511195
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A10124G C14408T G14584A A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511196
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511197
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C664T C2399T C3037T A6391G C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511198
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T1243C C3037T A9235G G10265A C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511199
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1439A C3037T A4447G C14408T C16733T C21621T A23403G A26530G G29449T T29574C G29737T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511200
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C21575T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511201
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1439A C3037T A4447G C14408T C16733T C21621T A23403G A26530G G29449T T29574C G29737T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511202
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1439A C3037T A4447G C14408T C16733T C21621T A23403G A26530G G29449T T29574C G29737T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511203
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1439A C3037T A4447G C14408T C16733T C21621T A23403G A26530G G29449T T29574C G29737T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511204
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1439A C3037T A4447G T4579A C14408T C16733T C21621T A23403G A26530G G28827T G29449T T29574C G29737T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511205
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G1439A C3037T C4367A A4447G C14408T C16733T C21621T A23403G A26530G G29449T T29574C G29737T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511206
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1439A C3037T A4447G C14408T C16733T C21621T A23403G A26530G G29449T T29574C G29737T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511207
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T G11083T T14394C C14408T G16852T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511208
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511209
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T G11083T T14394C C14408T G16852T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511362
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G20434T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511398
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C9891T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511431
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T658C C3037T C12043T C14408T A23403G C25207T GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511432
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T658C C3037T C12043T C14408T A23403G C25207T GGG28881AAC C29296T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511435
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C13059T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511451
 2020-03-31 2020-08-07
 Portugal hCoV-19/Portugal/PT1492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511529
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT0980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A9467G C14408T C15324T C18747T C21691T A23403G C29218T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511656
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT1109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC T29726C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511663
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT1116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G3231T A12868G C14408T C15738T C16111T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511668
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT1121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4474T A14406G C14408T C21575T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511669
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT1122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C313T C3037T C14408T G22627A A23403G G25489T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511675
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT1128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C190T C241T C3037T C14408T A23403G GGG28881AAC A29770T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511687
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT1140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6539T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511688
 2020-03-31 2020-08-08
 Portugal hCoV-19/Portugal/PT1141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTA1- C241T C3037T C6539T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511900
 2020-03-31 2020-08-10
 India hCoV-19/India/IK3/2020
 G1820A C6310A C6312A G11083T C13730T C19524T C21658T C23929T C28311T G29868A

EPI_ISL_512812 MT872502
 2020-03-31 2020-08-11
 Sierra Leone SARS-CoV-2/human/SLE/KGH-G-8549/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_513632
 2020-03-31 2020-08-13
 United States hCoV-19/USA/WA-UW-4607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T G20014T A23403G G25563T C27804T G29553A GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_514264
 2020-03-31 2020-08-16
 Peru hCoV-19/Peru/INS-043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C12854T C13536T C14408T A21131G A23403G C23731T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_514653 MT893000
 2020-03-31 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T G14580A T19527C A19821G G22346T A23403G G25563T C27964T C28099T C29722T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514654 MT893001
 2020-03-31 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9561T C9611T G9805T C14408T A23403G A28858G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514655 MT893002
 2020-03-31 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1436/2020
 ATTAAAGGTTT1- T490A C3177T C8782T G14186T T18736C G18781A G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514656 MT893003
 2020-03-31 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1437/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C12501T C14408T A23403G G27715T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514657 MT893004
 2020-03-31 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1438/2020
 ATT1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515272
 2020-03-31 2020-08-18
 United States hCoV-19/USA/WA-UW-4569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C6040T C14408T C19560T T21995G A23403G G25563T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515273
 2020-03-31 2020-08-18
 United States hCoV-19/USA/WA-UW-4581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C2156T C3037T G12352C C14408T A23403G G25563T G29553A GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515274
 2020-03-31 2020-08-18
 United States hCoV-19/USA/WA-UW-4585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C8782T G16141A C17747T A17858G C18060T C23758T T28144C GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515276
 2020-03-31 2020-08-18
 United States hCoV-19/USA/WA-UW-4592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T C16859T A23403G G25563T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515278
 2020-03-31 2020-08-18
 United States hCoV-19/USA/WA-UW-4603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T A23403G G25563T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515522
 2020-03-31 2020-08-19
 Brazil hCoV-19/Brazil/SP-122/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_516367
 2020-03-31 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C823T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516372
 2020-03-31 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T A5011M C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520726
 2020-03-31 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920633851/2020
 C241T T727C C3037T C3373A C11195T C11665T G13812T C14408T C18252T A23403G G28580T GGG28881AAC

EPI_ISL_520727
 2020-03-31 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920634181/2020
 C241T G943A G1563A C3037T G6576A G7393T C14408T C19602T T20277C A23403G GGG28881AAC

EPI_ISL_520728
 2020-03-31 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920634731/2020
 C241T C913T C3037T G10523C C14408T C15324T A23403G G28690T

EPI_ISL_522549
 2020-03-31 2020-08-26
 France hCoV-19/Reunion/RUN-PIMIT20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523476
 2020-03-31 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523956
 2020-03-31 2020-08-27
 Brazil hCoV-19/Brazil/SP-132/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T TA14501AC A23403G T27299C GGG28881AAC T29148C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852T

EPI_ISL_523969
 2020-03-31 2020-08-27
 Brazil hCoV-19/Brazil/SP-170/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T A6319G C14408T A23403G G25088T T26149C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_525643
 2020-03-31 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-34682-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T1303C C3037T G10265A C14408T A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525645
 2020-03-31 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-34804-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_525646
 2020-03-31 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-34848-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1917T C3037T C14408T G20005A T21458C A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_525647
 2020-03-31 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-34855-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C9665T G13385A C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527878
 2020-03-31 2020-09-05
 Nigeria hCoV-19/Nigeria/ED07-CV160/2020
 ATTAAA1- A2480G C2558T T6322A G11083T C14805T G15982T G26144T G26779T A29222G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_530052
 2020-03-31 2020-09-10
 Spain hCoV-19/Spain/MD-LP49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16946T G18756A A20268G A22606T A23403G TATCTA27320- G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530222 MT997744
 2020-03-31 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T G1463A C3037T G7557A C8818T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_530223 MT997745
 2020-03-31 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C21707T A23403G A26530G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_530226
 2020-03-31 2020-09-11
 Australia hCoV-19/Australia/QLD963/2020/P1
 ATT1- C241T C3037T C5223T C14408T T18417C G19083T A20268G C21597T A23403G C28887T C29870A

EPI_ISL_534347
 2020-03-31 2020-09-14
 Russia hCoV-19/Russia/CRIE161122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C17410T A23403G GGG28881AAC C29304T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_534348
 2020-03-31 2020-09-14
 Russia hCoV-19/Russia/CRIE166064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_534349
 2020-03-31 2020-09-14
 Russia hCoV-19/Russia/CRIE166582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T G341A C3037T C3373A C6883T C13487T G14277T C14408T G21724A A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_534817
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2E12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C162Y C241T C3037T C14408T A20796G T21722K A21744W T21755K A23403G G24038T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_534821
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2E8B/2020
 C241T C3037T C14408T G22592T A23403G G28371T GGG28881AAC A29893W A29903-

EPI_ISL_534868
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B35A3/2020
 C241T C3037T C14408T T18398C A23403G G24781T G28580A GGG28881AAC

EPI_ISL_534899
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3A68/2020
 A1515G C1943T C9223T T9835C G11083T C14805T T17247C G26144T

EPI_ISL_534948
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B435D/2020
 ATTAAAGGTT1- C241T C3037T C14408T C16393T A23403G C26256T C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_534954
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B442D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C3037T C14408T A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_534971
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4760/2020
 C241T C3037T C14408T A20796G A23403G G24038T GGG28881AAC

EPI_ISL_534980
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B48A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTA1- C241T G331K C3037T C4002T G10097A C13536T C14408T A23403G C23731T C25883M C27970T GGG28881AAC G29513T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_535006
 2020-03-31 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4CE9/2020
 AT1- C241T C3037T C6968T C14408T A23403G GGG28881AAC AA29902-

EPI_ISL_536369
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243673/2020
 ATTAAAGGTTTATACCT1- C241T G662T C3037T C5672Y C14408T C15324T C16726Y A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536370
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243675/2020
 ATTAAAGGTTTA1- C241T C3037T A7966R G10265A G11401T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536372
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243708/2020
 ATTAAAGGTT1- C241T C3037T A7468T C14408T A20268G A23403G C26313T C26907T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536373
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C11916T C14408T C18998T G21786A A23403G G25563T G29540A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536377
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1912T C3037T C14408T A23403G G25563T A25806W GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536378
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T C14408T C17491T A23403G C25904T GGG28881AAC A29700R CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536379
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C346T C3037T C14408T C15324T A23403G C25433T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536381
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C8208T G9267A T9667C C14408T A23403G G25947T G28361A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536383
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C815T C3037T C14408T A23403G G25437T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536385
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00243976/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536387
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244008/2020
 ATTAAAGGTTTA1- T490A G526K C3177T C6926Y C8782T A11600G C18395Y T18736C C24034T T26729C C27635T G28077C T28144C A29567C A29700G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536388
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C15324T A23403G C25433T G28086R T28088W CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536389
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T A26126W TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536390
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244160/2020
 ATTAAAGGT1- C241T C3037T C5512T T9667C C14408T C20930T A23403G G25947T G28361A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_536391
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244197/2020
 ATTAAA1- C241T C3037T C14408T C15324T A23403G C25433T T27444C C27847T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536392
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244326/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536393
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244338/2020
 AT1- C241T C3037T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536395
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T AAGTCATTT686- C3037T C9050Y A13175R C14408T A20268G GTG22578ACA A23403G A24402G C26313T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536397
 2020-03-31 2020-09-15
 Canada hCoV-19/Canada/QC-LSPQ-L00244359/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C4794T C4824T C6037T C14408T C15324T A23403G C25433T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536529
 2020-03-31 2020-09-16
 Peru hCoV-19/Peru/ANC-INS-132/2020
 ATTAAAG1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C29739T

EPI_ISL_537496
 2020-03-31 2020-09-16
 United States hCoV-19/USA/CA-UCLA-157/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C19813T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_537497
 2020-03-31 2020-09-16
 United States hCoV-19/USA/CA-UCLA-158/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C19813T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_537573
 2020-03-31 2020-09-16
 United States hCoV-19/USA/CA-UCLA-44/2020
 A1- C241T G373T AAGTCATTT686- C1059T C3037T C14408T C22450T A23403G G25563T G29645T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_538336
 2020-03-31 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G2625A C3037T C6548T C14408T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_538338
 2020-03-31 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G A23544G G25563T C27679T G29540A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538339
 2020-03-31 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2811/2020
 ATTAAAGGTTTATAC1- C241T C2416T C3037T C14408T A21447R A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538465
 2020-03-31 2020-09-17
 Singapore hCoV-19/Singapore/933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A C8139T G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538466
 2020-03-31 2020-09-17
 Singapore hCoV-19/Singapore/934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G10400A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538816
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T C20941T G21724T A23403G G23587C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538820
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA5AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A7479G G11083T C14805T T17247C C25572T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538844
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA2E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C3510T T10453C C11195T C14408T A23403G GGG28881AAC C29509T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538847
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A A14355G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538901
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539002
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A825D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C9430T C14408T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539004
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539023
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13379A C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539034
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8A0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539051
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A88A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9246T G13379A C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539099
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8D10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2443R C3037T C13730T C14408T A23403G C23937Y G25429T C25916T C28725Y C28826Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539118
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8B16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14599Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539119
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A88C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4893Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539176
 2020-03-31 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8E4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2037T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539494
 2020-03-31 2020-09-18
 Czech Republic hCoV-19/Czech Republic/NRL-5635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T AA2361RR C2371Y C2488T CTA2571- C3037T G11083T C14408T T17865C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541770
 2020-03-31 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286DE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G G25552T GGG28881AAC C28887T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542581
 2020-03-31 2020-09-23
 United States hCoV-19/USA/TX-HMH-1197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A6677G C11916T C14408T A14463G C18998T A20553G A23403G G25563T C25916T G29540A G29587A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542585
 2020-03-31 2020-09-23
 United States hCoV-19/USA/TX-HMH-1205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2969G C3037T C14408T A23403G A25241G G25563T G26389T C27769T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542587
 2020-03-31 2020-09-23
 United States hCoV-19/USA/TX-HMH-1213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C7764T C8782T C8950T G12478A T18736C T19713C C24034T C25096T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542610
 2020-03-31 2020-09-23
 United States hCoV-19/USA/TX-HMH-1248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560569
 2020-03-31 2020-09-29
 France hCoV-19/France/CVL8262/2020
 A26- C28T C241T C3037T C14408T C21233T A23403G A23691G C24621T GGG28881AAC C29743A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_560582
 2020-03-31 2020-09-29
 France hCoV-19/France/GE8508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G23501T AG29687TA TAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29693-

EPI_ISL_560583
 2020-03-31 2020-09-29
 France hCoV-19/France/GE8509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7066G C10232T C14408T C15324T C21110T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560596
 2020-03-31 2020-09-29
 France hCoV-19/France/HDF8249/2020
 A26- C28T C36T C241T C884T C1059T C3037T T13006C C14408T A23403G G25563T C25688T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_565974
 2020-03-31 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565978
 2020-03-31 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21917/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25563T C29750T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_568558
 2020-03-31 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-003/2020
 ATTAAAGGTTTATACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

MT380729
 2020-03-31 2020-04-24
 United States SARS-CoV-2/human/USA/VI-CDC-1999/2020
 C241T C1059T C3037T C9724T T10472Y T11974C C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

MT506707
 2020-03-31 2020-05-21
 United States SARS-CoV-2/human/USA/COVID19-AK087/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T T6778W T7082Y C14006A C14408T A23403G C23423T G25563T G28044T

MT706210
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C11653T C14408T C18705T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706218
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706221
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G25855T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706227
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706230
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T G9053C C14408T A23403G T29008C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706231
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T C22687T A23403G G25563T C25671T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706233
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/CO-UW-113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C5826T C14408T G20356T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706235
 2020-03-31 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810480
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1381-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T C3885T G4657A C14408T A19453C G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811182
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0135-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T C15346T C19269T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811186
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0477-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811190
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0483-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G4504A C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811191
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0484-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C988T C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811197
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0494-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G431A C1059T G2600A C3037T C7119T C14408T A23403G G25563T T27634C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811207
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0506-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6629T C14408T C23277T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811208
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0508-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C18115T C18377T A23403G A25182C G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811330
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0709-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C13487T C14408T C16762T A23403G G25563T C26885T A29112T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811380
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0801-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811382
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0803-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C988T C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811388
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0813-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811397
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0830-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G431A C1059T G2600A C3037T C7119T C14408T A23403G G25563T T27634C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811399
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0832-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811403
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0837-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811441
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0975-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C13487T C14408T C16762T A23403G G25563T C26885T A29112T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811446
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0980-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G4504A C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811448
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0982-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A3938C T8996G C14408T G17014T A23403G G25563T G26769T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811454
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0991-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6629T C14408T C23277T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811654
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0140-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811657
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0143-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G A24952G G25563T C27964T C28826T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811676
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0162-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811678
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0164-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T G16622A A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811688
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0207-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G4148T C10188T C14408T C17440T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811694
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0264-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- AAGTCATTT686- C1059T G2808A C3037T G3582T C14408T A23403G G25563T A26433G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811696
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0266-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811697
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0267-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6285T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811701
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0271-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T T29128C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811705
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0275-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T A23403G G25563T C27600T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811706
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0276-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C21629A A23403G G25563T C27964T C29347T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811709
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0279-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G6362A C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811711
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0281-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T C19586A C21627T A23403G G25563T G26209T C27654T C27964T C29025T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811713
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0283-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G8131T C10319T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811716
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0286-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T T21968C A23403G G25563T C25886T C27964T T29302C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811719
 2020-03-31 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0289-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T C19586A C21304A C21627T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT845877
 2020-03-31 2020-08-06
 Germany SARS-CoV-2/human/DEU/SC2_REGS25568233R/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T C18788T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT956912
 2020-03-31 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-70065641/2020
 C241T C3037T C14408T A23403G

MW030199
 2020-03-31 2020-09-22
 Peru SARS-CoV-2/human/PER/covper056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

NMDC60013169
 2020-03-31 2020-06-01
 China hCoV-19/Guangzhou/ID108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C29870A

EPI_ISL_414543 LR878332
 2020-03-xx 2020-03-13
 Netherlands hCoV-19/Netherlands/NoordBrabant_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C11572T C18647T T25612G T26274C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_418925 MT263438
 2020-03-xx 2020-03-30
 United States SARS-CoV-2/human/USA/UNKNOWN-UW358/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C3037T C14408T A23403G C25452T

EPI_ISL_418941 MT263454
 2020-03-xx 2020-03-30
 United States SARS-CoV-2/human/USA/WA-UW374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- CC36TA C8782T C17326T C17747T A17858G A17884G C18060T G19645T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_419691
 2020-03-xx 2020-04-03
 Latvia hCoV-19/Latvia/ChVir2025/2020
 ATTA1- C241T T658C C3037T C14408T C22414T A23403G A24862G C28629T C29253T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419692
 2020-03-xx 2020-04-03
 Belarus hCoV-19/Belarus/ChVir2072/2020
 ATTAAAGGTTT1- G1397A G11083T T16857C T17659G C18086T T28688C C28849G G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_419693
 2020-03-xx 2020-04-03
 Belarus hCoV-19/Belarus/ChVir2073/2020
 ATTAAAG1- C241T C3037T C14408T A20255G A23403G T27522C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_420065
 2020-03-xx 2020-04-04
 Estonia hCoV-19/Estonia/ChVir1982/2020
 C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_420066
 2020-03-xx 2020-04-04
 Estonia hCoV-19/Estonia/ChVir1983/2020
 C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_420067
 2020-03-xx 2020-04-04
 Estonia hCoV-19/Estonia/ChVir1985/2020
 ATTAAAGGTT1- C241T C3037T C14408T A23403G G24077T T29173Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_420540
 2020-03-xx 2020-04-06
 Estonia hCoV-19/Estonia/ChVir2148/2020
 ATTAAA1- C241T C1059T C3037T C14408T A17270G G17658T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_422968
 2020-03-xx 2020-04-12
 United States hCoV-19/USA/UN-UW-1331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGA1- C5170T C8782T C16468T T17673C C17747T A17858G C18060T T28144C A29903-

EPI_ISL_424248 MT326173
 2020-03-xx 2020-04-12
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-1773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAA1- C3037T C14408T G17964A A23403G C23575T A29903-

EPI_ISL_424353
 2020-03-xx 2020-04-09
 United States hCoV-19/USA/NC_200173/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C26801T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_424354
 2020-03-xx 2020-04-08
 United States hCoV-19/USA/NC_200189/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_424367
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/343/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424368
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/344/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424369
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/345/2020
 T7876A G11083T C18395T C21614T G22225T G26144T

EPI_ISL_424370
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/346/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28048T

EPI_ISL_424371
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/347/2020
 C241T C1059T C3037T C14408T C20178T A23403G G25563T

EPI_ISL_424534
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/512/2020
 C241T C3037T C14408T C16289T A19960G A23403G G25429T

EPI_ISL_424537
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/515/2020
 C241T C3037T A11839G C14408T G16377T T19839C A23403G G23856A GGG28881AAC

EPI_ISL_424540
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/519/2020
 G1440A G2891A A4140G

EPI_ISL_424541
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/520/2020
 C241T T2931C C3037T C14408T C16289T A19960G A23403G G25429T

EPI_ISL_424542
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/521/2020
 T514C ATG1605- C17410T

EPI_ISL_424548
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/527/2020
 T3034C G11083T C14805T C16054T T16521C T17247C T17859C G26144T G29751C

EPI_ISL_424549
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/528/2020
 G1440A G2891A A4140G

EPI_ISL_424550
 2020-03-xx 2020-04-13
 Iceland hCoV-19/Iceland/529/2020
 G1440A G2891A A4140G

EPI_ISL_424860
 2020-03-xx 2020-04-13
 United States hCoV-19/USA/GA_2055/2020
 T490A C3177T C8782T C11824T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424862
 2020-03-xx 2020-04-13
 United States hCoV-19/USA/GA_2120/2020
 T490A C3177T C8782T T18736C C24034T T26729C C27635Y T27698G G28077C C28093Y T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424863
 2020-03-xx 2020-04-13
 United States hCoV-19/USA/GA_2185/2020
 C8782T C16466Y C17747T A17858G C18060T GG18505RK T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_424983
 2020-03-xx 2020-04-08
 United States hCoV-19/USA/NC_200191/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_424987
 2020-03-xx 2020-04-08
 United States hCoV-19/USA/NC_200181/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_424993
 2020-03-xx 2020-04-14
 France hCoV-19/France/KRA-ROB/2020
 C241T A618G C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_425176
 2020-03-xx 2020-04-14
 United States hCoV-19/USA/WI-UW-119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G T27348C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426418 MT344946
 2020-03-xx 2020-04-15
 United States SARS-CoV-2/human/USA/GA_2147/2020
 C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426419 MT344947
 2020-03-xx 2020-04-15
 United States SARS-CoV-2/human/USA/GA_2275/2020
 C241T C3037T C14408T C14809Y C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426508
 2020-03-xx 2020-04-17
 United States hCoV-19/USA/AZ-TG268417/2020
 C241T C1059T C3037T C11919T C14408T A23403G G25563T G27382T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_432311
 2020-03-xx 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-26B6D/2020
 C241T C3037T C14408T A23403G G25617T GGG28881AAC

EPI_ISL_434562
 2020-03-xx 2020-04-21
 Japan hCoV-19/Japan/TKYE6947/2020
 G11083T C14408T C26111T C29635T

EPI_ISL_434616
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-1/2020
 C241T C1427T C3037T G5305A G9422T G11083T C14408T A20262G A23403G G28739T GGG28881AAC

EPI_ISL_434617
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-2/2020
 C241T C1427T C2485T C3037T G5305A G7472A G9422T C14408T C16247T A20262G A23403G G25218T GGG28881AAC

EPI_ISL_434618
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-3/2020
 C241T C1427T C3037T G5305A G9422T C14408T A20262G A23403G G28739T GGG28881AAC

EPI_ISL_434619
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-4/2020
 C241T C1427T C3037T G5305A G7472A G9422T C14408T G19327A A20262G T22016A A23403G T27495G GGG28881AAC

EPI_ISL_434620
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-5/2020
 C241T C1427T C3037T G3419A G3871T C13517T C14408T A23403G GGG28881AAC

EPI_ISL_434621
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-6/2020
 C241T C3037T C14408T C15324T C19602T A23403G

EPI_ISL_434622
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-7/2020
 C241T C3037T G7472A C14408T C15324T C19602T A21245G A23403G

EPI_ISL_434623
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-8/2020
 C241T C3037T C14408T C15324T C19602T A23403G

EPI_ISL_434624
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-9/2020
 C241T C3037T C7203T C14408T C15324T C19602T A23403G

EPI_ISL_434625
 2020-03-xx 2020-04-30
 France hCoV-19/France/OCC-10/2020
 C241T C3037T G7472A C14408T C15324T C19602T A23403G

EPI_ISL_435286
 2020-03-xx 2020-05-04
 Israel hCoV-19/Israel/CVL-n6196/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435289
 2020-03-xx 2020-05-04
 Israel hCoV-19/Israel/CVL-nL19/2020
 C241T C1059T C3037T C14408T G15243T A23403G G25563T

EPI_ISL_435292
 2020-03-xx 2020-05-04
 Israel hCoV-19/Israel/CVL-nL33/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435723
 2020-03-xx 2020-05-05
 Poland hCoV-19/Poland/Wro-01/2020
 ATTAAAGGTT1- C241T C313T C3037T C14408T A23403G C27046T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTG29730- AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_444487
 2020-03-xx 2020-05-13
 Sweden hCoV-19/Sweden/KI-CTMR-V300037768-3D/2020
 ATTA1TTGCGTGTTTTACAG TTT9CCGCTATAACA C241T C1059T C3037T G12514T C13862T C14408T A23403G G24368T G25563T AAAAAA29873TGCGCC AAAA29880TTGT AA29885GC AAAAAAAAAAAAAAAA29888CG

EPI_ISL_444488
 2020-03-xx 2020-05-13
 Sweden hCoV-19/Sweden/KI-CTMR-V300056977-1H/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_444489
 2020-03-xx 2020-05-13
 Sweden hCoV-19/Sweden/KI-CTMR-V300057201-8E/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T A29876C A29878C A29880T AA29882GC -AAA29886TCTTTAATCAGTGTGTAACATTGGG AA29891GG AAAA29894CTTG A29901G A29903GCCACC

EPI_ISL_444490
 2020-03-xx 2020-05-13
 Sweden hCoV-19/Sweden/KI-CTMR-V300037768-4D/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A22102C A23403G G24368T G25563T CATGCAGACCACACAAGG29537- ATGA29866GCTG AA29871CT A29874T AAA29876TGG A29881G AAAAA29883GCCCT AAAAA29890TGTGT AA29899TT A29903TTTTAGTAGTG

EPI_ISL_444491
 2020-03-xx 2020-05-13
 Sweden hCoV-19/Sweden/KI-CTMR-V300037768-8A/2020
 A1G A4C G7T TA11- T13A C241T C1059T C3037T G3251T C14408T G17562T G18186T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_444492
 2020-03-xx 2020-05-13
 Sweden hCoV-19/Sweden/KI-CTMR-V300056977-4A/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G C23929T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872T

EPI_ISL_447654 MT470100
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10027AA/2020
 A2480G C2558T G11083T C14805T G22021T G24095T G26144T

EPI_ISL_447655 MT470101
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/70001GR/2020
 C241T C3037T C14177T C14408T C15324T A23403G

EPI_ISL_447656 MT470102
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/40004SR/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447657 MT470103
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50010DC/2020
 C241T C3037T C14408T C15852T A23403G C27046T GGG28881AAC

EPI_ISL_447658 MT470104
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/40005BH/2020
 C66T C7334T A7479G G11083T C14805T C15222T T17247C C21575T C25572T G26144T

EPI_ISL_447659 MT470105
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/60003NG/2020
 C2416T C3037T G8371T A23403G G25563T

EPI_ISL_447660 MT470106
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10036BG/2020
 C241T C3037T C14408T C15324T A23403G G28202A

EPI_ISL_447661 MT470107
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10037CJ/2020
 C241T C2416T C3037T C14408T A23403G G25563T G27382T

EPI_ISL_447662 MT470108
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/40006SG/2020
 A2480G C2558T G11083T C14805T G24095T G26144T

EPI_ISL_447663 MT470109
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10030NV/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447664 MT470110
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10040LJ/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447665 MT470111
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10041MR/2020
 C6040T C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447666 MT470112
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/20001SE/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_447667 MT470113
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10048SA/2020
 C241T C3037T C14408T C15324T A23403G C24621T

EPI_ISL_447668 MT470114
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10046GM/2020
 C241T C3037T A3428C C14408T C15324T A23403G

EPI_ISL_447669 MT470115
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10029DT/2020
 C241T C14408T A23403G

EPI_ISL_447670 MT470116
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10031BS/2020
 C241T C3037T C6541T C14408T C23393T A23403G G29260T

EPI_ISL_447671 MT470117
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/60002VV/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447672 MT470118
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10032KL/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447673 MT470119
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50008KC/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447674 MT470120
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10033ZM/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26101T

EPI_ISL_447675 MT470121
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10034HM/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447676 MT470122
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10050RA/2020
 A2480G C2558T G11083T C14805T C22088A G24095T G26144T

EPI_ISL_447677 MT470123
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10045DZ/2020
 C241T C2416T C3037T G11083T C14322T C14408T A23403G G25563T T26038C A28254T

EPI_ISL_447678 MT470124
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10051SM/2020
 C241T C3037T C14408T C15324T G15380T C16178T A23403G

EPI_ISL_447679 MT470125
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10063BI/2020
 C241T T8004C G20477T G22698T A23403G C25350T C25609T C26728T GGG28881AAC

EPI_ISL_447680 MT470126
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10066GJ/2020
 C241T C1059T C3037T A9848G C14408T A23403G G25563T T29867A

EPI_ISL_447681 MT470127
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10069NM/2020
 C241T C3037T C6016A T10561C C14408T C15324T C21575T A23403G

EPI_ISL_447682 MT470128
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10071BR/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_447683 MT470129
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10060KV/2020
 

EPI_ISL_447684 MT470130
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10074LD/2020
 

EPI_ISL_447685 MT470131
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10072CG/2020
 

EPI_ISL_447686 MT470132
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10076MH/2020
 C241T C1059T C3037T T13006C C14408T C23277T A23403G G25563T C25688T

EPI_ISL_447687 MT470133
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10078MA/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447688 MT470134
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10057CJ/2020
 C241T G6975T C6982T C14408T A23403G G25563T G29777T

EPI_ISL_447689 MT470135
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10062MD/2020
 C2416T C3037T C14408T A23403G G25563T A25853G

EPI_ISL_447690 MT470136
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10059IS/2020
 C241T C3037T C12076T C14408T C15324T A23403G

EPI_ISL_447691 MT470137
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10068ND/2020
 C241T A23403G

EPI_ISL_447692 MT470138
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/40007RD/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447693 MT470139
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/5003KM/2020
 A2480G C2558T G11083T C14805T G24095T G26144T

EPI_ISL_447694 MT470140
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50002BS/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447695 MT470141
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10004CF/2020
 

EPI_ISL_447696 MT470142
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10009EE/2020
 C11758T

EPI_ISL_447697 MT470143
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10008DM/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447698 MT470144
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50001AR/2020
 C241T C1059T C3037T C14408T C14925T C16045T A23403G C23589T C25047T G25563T

EPI_ISL_447699 MT470145
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10010LA/2020
 T1372C C1420T A2480G C2558T G11083T C14805T G24095T G26144T

EPI_ISL_447700 MT470146
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10014BC/2020
 C241T T778C C1059T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_447701 MT470147
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10080AA/2020
 C241T C1059T C3037T C10582T C14408T A23403G G25563T C27059T

EPI_ISL_447702 MT470148
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10019LM/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447703 MT470149
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10018HJ/2020
 C241T C2416T C3037T C4900T C14408T A23403G G25563T

EPI_ISL_447704 MT470150
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10020MM/2020
 

EPI_ISL_447705 MT470151
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50005JM/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447706 MT470152
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50004CS/2020
 A2480G C2558T G11083T C14805T G24095T G26144T

EPI_ISL_447707 MT470153
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10016DC/2020
 C241T C3037T C14408T C15324T C21575T A23403G

EPI_ISL_447708 MT470154
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10015BY/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447709 MT470155
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10012BM/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447710 MT470156
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10017GS/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_447711 MT470157
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10013BA/2020
 C241T C1059T C3037T C14184T C14408T A23403G G25563T

EPI_ISL_447712 MT470158
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10021SB/2020
 

EPI_ISL_447713 MT470159
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10011AS/2020
 A2480G C2558T C8722T G11083T C14805T A15033C G24095T G26144T

EPI_ISL_447714 MT470160
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10023FD/2020
 C241T C1059T C3037T T10933C C14408T T17142C T22707A A23403G G25563T

EPI_ISL_447715 MT470161
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10022AR/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_447716 MT470162
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50011LM/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447717 MT470163
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10001DM/2020
 

EPI_ISL_447718 MT470164
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50007PI/2020
 C241T C3037T C14408T C15324T A23403G C27208T

EPI_ISL_447719 MT470165
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10003SN/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447720 MT470166
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10025GM/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T G29422A

EPI_ISL_447721 MT470167
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10002PM/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447722 MT470168
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10026SL/2020
 C241T C1059T C3037T C14408T C14925T C16045T C18167T A23403G C23589T C25047T G25563T

EPI_ISL_447723 MT470169
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/30001MB/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_447724 MT470170
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/40003KA/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_447725 MT470171
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10007LJ/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_447726 MT470172
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10028CD/2020
 C241T C1059T C3037T C14408T A23403G G25489T G25563T

EPI_ISL_447727 MT470173
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10006HC/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_447728 MT470174
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10053BP/2020
 

EPI_ISL_447729 MT470175
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10064DR/2020
 

EPI_ISL_447730 MT470176
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10065EE/2020
 C241T C3037T T10561C C14408T C15324T A23403G C26895T C29013T

EPI_ISL_447731 MT470177
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/10070SK/2020
 C3037T A10081T C14408T C22281T A23403G

EPI_ISL_447732 MT470178
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/50006PT/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_447733 MT470179
 2020-03-xx 2020-05-13
 France SARS-CoV-2/human/France/40002VJ/2020
 C241T C2416T G12079C C14408T C23220A

EPI_ISL_450496
 2020-03-xx 2020-05-21
 Lithuania hCoV-19/Lithuania/ChVir2225/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_450497
 2020-03-xx 2020-05-21
 Lithuania hCoV-19/Lithuania/ChVir2226/2020
 ATTAAAGGTTT1- T514C ATG1605- G5629T C17410T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_450498
 2020-03-xx 2020-05-21
 Estonia hCoV-19/Estonia/ChVir1984/2020
 ATTAAAG1- C241T C3037T G11761T C14408T A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_451948
 2020-03-xx 2020-05-25
 Belarus hCoV-19/Belarus/ChVir2070/2020
 ATTAAAGGTTTAT1- G1397A G11083T T16857C T17659G C18086T T28688C C28849G G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_454796
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200217/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454797
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200219/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454799
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200241/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T A1317G C3037T C14408T C20031T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454800
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200242/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T T4885C C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454801
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200243/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T C9430T A13962G T18736C T23677C C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454802
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200244/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454803
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200245/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_454804
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200247/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T T14568C C17747T A17858G C18060T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454806
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200255/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T490A G1413T C3177T C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_454807
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200256/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25563T C29708T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454808
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200259/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T C9891T C15960T G17509T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454814
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200300/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3589T C8782T C17747T A17858G C18060T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454815
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200306/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T T29847G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454816
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200310/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C11653T C14408T T18471C A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454820
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200323/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3589T C8782T C17747T A17858G C18060T T27408C T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454823
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200331/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454824
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200330/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T C9430T A13962G T18736C T23677C C24034T T26729C C27635T G28077C T28144C A29700G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_454826
 2020-03-xx 2020-05-28
 United States hCoV-19/USA/NC_200253/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A G1413T C3177T C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_457719
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4261/2020
 ATTAAAGG1- C241T C1059T C3037T C11919T C14408T C20077T G22331A A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457720
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4262/2020
 ATTAAAGGTT1- C241T C1059T C3037T C9565T A11983G C14408T A21076G A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_457722
 2020-03-xx 2020-06-02
 Estonia hCoV-19//Estonia/ChVir4266/2020
 ATT1- C241T C3037T C6401T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457723
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4285/2020
 ATTAAAGGTT1- C241T C3037T C11074T C14408T C18877T A23403G G24197T G25563T C26735T C28290T G29755T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457725
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4286/2020
 ATTA1- C241T C3037T C4234T C14408T T19839C A23403G T27405G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457727
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4287/2020
 ATT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457729
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4292/2020
 ATTAAAGGTT1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457731
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4293/2020
 ATTAAAGGTTTATAC1- C241T ATG518- C1878T G2305T C3037T G6536R C14408T A23403G C29625T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_457734
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4298/2020
 ATTAAAGGTTT1- C241T C3037T C4234T C14408T T19839C A23403G GGG28881AAC C29545Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_457735
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4299/2020
 ATTAAAGGT1- C241T C3037T C4234T C14408T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457737
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4301/2020
 ATTAAAGGTT1- C241T C3037T C4234T C14408T T19839C A23403G GGG28881AAC C29545T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457738
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4305/2020
 ATTAAAGGTTTA1- C32T C241T C3037T C4234T C14408T T19839C A23403G G25437T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_457739
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4312/2020
 ATTAAAGGTTTATA1- C241T C3037T C7851T C10582T C14408T T19839C C21575T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_457740
 2020-03-xx 2020-06-02
 Estonia hCoV-19/Estonia/ChVir4313/2020
 ATTAAAGGTT1- C241T C3037T C14408T C19145T T19839C C21575T G22487C A23403G A25492G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_457828
 2020-03-xx 2020-06-02
 Kenya hCoV-19/Kenya/NIC_084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4457G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460609
 2020-03-xx 2020-06-06
 Canada hCoV-19/Canada/BC_15926629/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_460610
 2020-03-xx 2020-06-06
 Canada hCoV-19/Canada/BC_16344159/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_460611
 2020-03-xx 2020-06-06
 Canada hCoV-19/Canada/BC_17045358/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_460612
 2020-03-xx 2020-06-06
 Canada hCoV-19/Canada/BC_17422770/2020
 G1440A G2891A C4668T

EPI_ISL_460614
 2020-03-xx 2020-06-06
 Canada hCoV-19/Canada/BC_17548428/2020
 C241T C1059T C3037T C14408T G15760A A23403G G25563T

EPI_ISL_460615
 2020-03-xx 2020-06-06
 Canada hCoV-19/Canada/BC_18097749/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_460616
 2020-03-xx 2020-06-06
 Canada hCoV-19/Canada/BC_18111443/2020
 C8782T C12294T C17747T A17858G C18060T T28144C G29736T

EPI_ISL_462446 LC549340
 2020-03-xx 2020-05-22
 Japan TKY3583_2020
 C241T C3037T C14408T G16744A A20268G G21190A A23403G T26301G

EPI_ISL_462757
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_18165111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16852T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462758
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_18507914/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T A29522G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462759
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_18547866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462760
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_18969070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C589T G2305T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462761
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_19421714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462765
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_19518330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462766
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_19677629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462767
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_19703911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462768
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_19704814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462769
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_19785113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462771
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20332712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462772
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20363111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462774
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20432317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462775
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20505516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T C19011A C25916T T28144C C28163T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462776
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20534610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462777
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20639310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462778
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20693717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C8290T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462779
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20722019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462780
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20730616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462781
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20734315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677T A23403G C24904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462782
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20847524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T G5953T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462783
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_20855313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462784
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21008811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462786
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21016029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8327T C14408T G21641T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462787
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21022514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462789
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21085515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T G10105T C14408T A23403G C28724T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462790
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21105219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A618G C3037T C10279T C14408T C15324T A23403G C25614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462791
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21110314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1048A G1440A G2891A G25681A A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462792
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21127214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462793
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21127913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677T A23403G C24904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462794
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21146111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C11976T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462798
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21187418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462802
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21228218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4668T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462805
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21317517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462806
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21333019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C12974T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462807
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21346429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462808
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21350918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T G10105T C14408T A23403G C28724T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462809
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21368114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462810
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21385821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462811
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21388915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8739T C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462812
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21426715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G G25726T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462813
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21446719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462814
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21461212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462815
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21462515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C4084T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462816
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21466919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462818
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21480617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462819
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21927217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462820
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_21993212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462821
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22032711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C14724T C17747T A17858G C18060T A21203G T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462822
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22037912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462824
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22070527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462825
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22156718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T6178C C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462826
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22218811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11417T C14408T G14829T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462827
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22230811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462828
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22332113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G11083T C17747T A17858G C18060T C24621T T28144C C28435T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462829
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22349316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462830
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22430814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G A29359T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462831
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22451513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462833
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22470913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462834
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22473210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17639T A20268G A23403G A28222G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462835
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22475116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462836
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22511314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C10789T C17747T A17858G C18060T C20132T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462837
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22514413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C10789T C17747T A17858G C18060T C20132T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462838
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_22946611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462840
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_23064916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462841
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_23094312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C6651T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462842
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_23098110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T C25350T C27911T T28144C C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462843
 2020-03-xx 2020-06-08
 Canada hCoV-19/Canada/BC_23108423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462992 MT576584
 2020-03-xx 2020-06-08
 Nigeria SARS-CoV-2/human/NGA/NG57752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C16575T A20374G A23403G GGG28881AAC CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_463186
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_23745918/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463187
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_23815516/2020
 A187G C241T C3037T C6286A C14408T A23403G

EPI_ISL_463189
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_23918026/2020
 C8782T C17747T A17858G C18060T C26022T T28144C

EPI_ISL_463191
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24044059/2020
 A187G C241T C1616T C3037T C14408T T22573C A23403G

EPI_ISL_463193
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24150410/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_463194
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24165067/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463195
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24190425/2020
 C241T C3037T C14408T C18877T C21575T A23403G G25563T

EPI_ISL_463196
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24192775/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463198
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24201275/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_463199
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24225776/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463200
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24228539/2020
 A6502G G7911T G11083T C14805T G26144T G28842T

EPI_ISL_463201
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24232310/2020
 G2883A G7561A C8782T C17747T A17858G C18060T G19109T G20491T T20745C T28144C G29000T

EPI_ISL_463202
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24234949/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_463203
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24235415/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463204
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24239917/2020
 C241T C3037T C14408T G19677T A23403G C24904T GGG28881AAC

EPI_ISL_463205
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24245374/2020
 C241T C3037T C14408T G19677T A23403G C24904T GGG28881AAC

EPI_ISL_463206
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24252365/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463207
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24258528/2020
 A2480G C2558T G11083T A13265C C14805T G26144T

EPI_ISL_463208
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24261010/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463209
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24271871/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463210
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24302962/2020
 A187G C241T C1616T C3037T C14408T A18187G A23403G

EPI_ISL_463211
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24319756/2020
 A187G C241T C1616T C3037T C14408T A23403G A29112T

EPI_ISL_463212
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24340030/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463213
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24340319/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_463214
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24360831/2020
 C241T C3037T T11320C C14408T C15324T A23403G

EPI_ISL_463215
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24380644/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_463216
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_24825751/2020
 C8782T C17747T A17858G C18060T C22000A T28144C

EPI_ISL_463217
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25143276/2020
 C8782T C17747T A17858G C18060T T28144C C29585T

EPI_ISL_463219
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25336669/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463221
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25376719/2020
 A187G C241T C1616T C3037T C14408T G17722T A23403G A29359T

EPI_ISL_463222
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25384316/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463223
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25390851/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_463224
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25416870/2020
 A187G C241T C1616T C3037T C14408T A23403G C29311T

EPI_ISL_463225
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25515215/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463226
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25574199/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463228
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25856970/2020
 C8782T C10416T C17747T A17858G C18060T A20216G T28144C

EPI_ISL_463229
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_25857092/2020
 C8782T C10416T C17747T A17858G C18060T A20216G T28144C

EPI_ISL_463230
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26101196/2020
 C241T C1059T C3037T C4940T C12513T C14408T A23403G G25563T

EPI_ISL_463231
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26172976/2020
 C6606T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463232
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26384651/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463235
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26509737/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463236
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26564890/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463237
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26584470/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463238
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26585549/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463241
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26591461/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463242
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26602426/2020
 C8782T C17747T A17858G C18060T T28144C C29585T

EPI_ISL_463243
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26605771/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463244
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26611727/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463245
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26624482/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463246
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26625053/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463248
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26646523/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463249
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26649386/2020
 G1440A G2891A C7011T

EPI_ISL_463250
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26650347/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463251
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26654155/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463252
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26656159/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463253
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26659043/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463254
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26693628/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_463256
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_26964094/2020
 C241T C3037T C14408T A16085G A20268G A23403G

EPI_ISL_463257
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27007571/2020
 C241T C1059T C3037T C14408T A16233G A23403G G25563T C27964T

EPI_ISL_463258
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27017413/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463259
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27081621/2020
 A6502G G7911T G11083T C11750T C14805T G26144T G28842T

EPI_ISL_463260
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27121841/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_463261
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27180562/2020
 A187G C241T C1616T C3037T C14408T G17722T A23403G A29359T

EPI_ISL_463262
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27222254/2020
 C8782T C14724T C17747T A17858G C18060T A21203G T28144C

EPI_ISL_463263
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27279444/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463264
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27280425/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463265
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27280641/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463266
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27280776/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463267
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27283916/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463268
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27285211/2020
 C241T C3037T C14408T G19677T A23403G GGG28881AAC

EPI_ISL_463270
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27298990/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463271
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27302671/2020
 A187G C241T C1616T C3037T C14408T A23403G C25546T

EPI_ISL_463273
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27303944/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_463274
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27304064/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463275
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27304554/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_463276
 2020-03-xx 2020-06-10
 Canada hCoV-19/Canada/BC_27305318/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_468725 LC553270
 2020-03-xx 2020-06-03
 Japan TKYE63442_2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_477079
 2020-03-xx 2020-06-28
 Canada hCoV-19/Canada/BC_10404688/2020
 C241T C1059T C3037T C10138T C11916T C14408T C18998T T21769C A23403G G25563T G29540A

EPI_ISL_477080
 2020-03-xx 2020-06-28
 Canada hCoV-19/Canada/BC_10420892/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_477081
 2020-03-xx 2020-06-28
 Canada hCoV-19/Canada/BC_13929277/2020
 A187G C241T C1616T C3037T C14408T A18187G A23403G

EPI_ISL_477085
 2020-03-xx 2020-06-28
 Canada hCoV-19/Canada/BC_16505592/2020
 G1738T C8782T G14197A C17747T A17858G C18060T C25207T T28144C

EPI_ISL_477086
 2020-03-xx 2020-06-28
 Canada hCoV-19/Canada/BC_16510082/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_477088
 2020-03-xx 2020-06-28
 Canada hCoV-19/Canada/BC_02038211/2020
 G1738T C8782T G14197A C17747T A17858G C18060T C25207T T28144C

EPI_ISL_479944
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C8782T G16381A T17877C T28144C G28878A G29742A G29800C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479945
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479946
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T G16381A T17877C C26139T T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479947
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479948
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C A26563G T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479949
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A3309G C8782T C12473T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479950
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T G16381A T17877C T21925C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479951
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C8782T G16381A T17877C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479952
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C8782T G16381A T17877C T26355G T28144C G28878A G29742A TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_479953
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_479954
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479955
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479956
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C8782T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479957
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- A3754T C8782T C9559T G16381A T17877C T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479958
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C8782T A13919G G16381A T17877C G25500T T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479966
 2020-03-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_489991
 2020-03-xx 2020-07-15
 Thailand hCoV-19/Thailand/Samut Songkhram-0942/2020
 ATTA1- C6312A G11083T C13730T G20670A C23929T C28311T G28845A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_498468
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A T7225C T27384C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498472
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498473
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G374A C8782T A11849G C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498477
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25473C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498478
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C13536T C14184T C14408T A23403G C23731T G28086T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498480
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498483
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498485
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498486
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498490
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498491
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G542A C3096T A7479G G11083T C14805T T17247C C25572T G26144T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498492
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T T18768C C21642T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498493
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C C28957T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498494
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C17898T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498495
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498496
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G17590T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498498
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A27675C A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498499
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G374A C1348T C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498500
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498501
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498502
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G374A C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498503
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T G20931T A23403G C23439T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498506
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498510
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1514T C3037T G3892A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498511
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498512
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498513
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498514
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C683T C2106T T4057C C21005T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498515
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C27644T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498526
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9430T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498529
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4755T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498531
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T C11074T G11083T C14805T A21868T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498537
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498542
 2020-03-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13270C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515288
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/NIH_3623/2020
 ATTAAAG1- A895G C2942T G4390T C8782T C9598T G14857T G20134T G24047A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_515289
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/NIH_3710/2020
 ATTA1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_515290
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/NIH_3713/2020
 ATTAAAGGTTTA1- A895G T1939G C2942T G4390T A8388G C8782T T8987A C9598T G13249T G20134T G24047A C27213T G27877T T28144C AAAA29900-

EPI_ISL_515291
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/NIH_3744/2020
 ATTA1- T694C A895G C2942T C3768T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_515292
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/NIH-3083/2020
 A4- G331A A895G C2942T A3778G G4390T T4839C A8388G C8782T T8987A C9598T G11083T G20134T G24047A G27877T T28144C AAAA29900-

EPI_ISL_515463
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/Bangkok_3001/2020
 ATT1- A895G C2942T C3768T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_515465
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/Bangkok_3049/2020
 ATTA1- A895G C2942T C3768T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_515470
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/Nonthaburi_2953/2020
 A1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAAAA29890-

EPI_ISL_515475
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/Bangkok_2864/2020
 ATTAA1- A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAAAA29890-

EPI_ISL_515477
 2020-03-xx 2020-08-19
 Thailand hCoV-19/Thailand/Bangkok_2867/2020
 ATTAA1- A895G C2942T G4390T C8782T C9598T G20134T G24047A T28144C A29886C AAAAAAAAAAAA29892-

EPI_ISL_516627
 2020-03-xx 2020-08-21
 Estonia hCoV-19/Estonia/ChVir4307/2020
 ATTAAAG1- C241T C3037T C14408T T19839C C21575T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516988
 2020-03-xx 2020-08-24
 Slovakia hCoV-19/Slovakia/ChVir-1996/2020
 ATTAA1- C241T C884T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516989
 2020-03-xx 2020-08-24
 Slovakia hCoV-19/Slovakia/ChVir-1998/2020
 ATTA1- C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_548148
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-1227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C13862T C14408T A23403G C28836T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548149
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T C20133T A23403G C25433T C26110T C29546T A29740G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548150
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G11083T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548153
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548154
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548155
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C23575T G23587C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548156
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548157
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548159
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C1170T C8782T T9477A C14805T G25979T C26681T T28144C C28657T C28863T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548160
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G C27741T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548161
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A518G C3037T C8293T C14408T T18488C A23403G T24739C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548162
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-2956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G18596T T19839C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548165
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-3187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C18060T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548166
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-3276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G A24121G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548168
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-3496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5855G C14408T T19839C A23403G C28512T GGG28881AAC G29751A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548170
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-3674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1917T C3037T C14408T C15324T A23403G C28708T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548172
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-3780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548173
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-5671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G G28881T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548174
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1218T C3037T C8293T C14408T C17676T T18488C A23403G T24739C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548175
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G13627T C14408T T19839C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548177
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548178
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G G25767T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548179
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548180
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548181
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548182
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-6955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G11083T C14408T A23403G G25429T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548183
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548184
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548185
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548186
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C5348T C14408T A23403G G25563T G25839T C28528T G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548187
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC G29751A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548188
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1634A C3037T C14408T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548189
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548190
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548191
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548192
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548193
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548194
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548195
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548196
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T C14408T A23403G A24423T G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548197
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548198
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548199
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548201
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A1515G C9223T G11083T G12565T C14805T T17247C A23913T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548202
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548204
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548205
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G C25433T C29546T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548206
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G11083T C14805T T17247C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548207
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3466C C6781T A7981G C13862T C14408T C15352T A23403G C28836T G29229A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548208
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548209
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548210
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G G25429T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548211
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5855G C14408T T19839C A23403G GGG28881AAC G29751A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548212
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-7986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548213
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC G29751A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548214
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548215
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548216
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G A24121G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548218
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548220
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC G29751A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548221
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A518G C3037T C8293T C14408T T18488C A23403G T24739C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548222
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G C25433T C29546T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548223
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548225
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8293T C14408T T18488C A23403G T24739C C28849A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548226
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G3122T C14408T C15324T A23403G G28881T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548228
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C28854T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_548229
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548230
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G C25433T C29546T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548231
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C934T C3037T C10138T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548232
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C5239T C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548233
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C26907T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548234
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-8936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C4320T C7843T C14408T C16985T A23403G G25563T C25688T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548235
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-9034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548237
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-9136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_548238
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-9173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G7798T C14408T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548240
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/GE-SNRCI-9980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548242
 2020-03-xx 2020-09-25
 Switzerland hCoV-19/Switzerland/VS-SNRCI-5838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T A23403G G28881T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548762
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G11828T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548763
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00170/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T C14408T A23403G G25563T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548764
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T G11828K C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548765
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T G25599K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548767
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548768
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G21624R A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548769
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548770
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548771
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T T1675C C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548772
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T A1486R C3037T G11828K C14408T A23403G C25366Y G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548773
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C21110T A23403G G25563T C25886T G28899A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548774
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00320/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548775
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548777
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00386/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548778
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548780
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00987/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548932
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-90069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G11828T C14408T A23403G G25563T G28903K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548933
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-90070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548934
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-90084/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548935
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-90085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548940
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-90107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G11828T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548941
 2020-03-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-90108/2020
 ATTAAAGGTTTATA1- C241T C1059T A1856G C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

LC542809
 2020-03-xx 2020-04-18
 Japan TKYE6947_2020
 G11083T C14408T C26111T C29635T

MT320538
 2020-03-xx 2020-04-09
 France SARS-CoV-2/human/FRA/KRA-ROB/2020
 C241T A618G C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT322396
 2020-03-xx 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C3589T C8782T C13138T C17747T A17858G C18060T T28144C C29870A

MT322397
 2020-03-xx 2020-04-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0004/2020
 ATTAAAGGTT1- C3589T C8782T C17747T A17858G C18060T T28144C

MT325571
 2020-03-xx 2020-04-10
 United States SARS-CoV-2/human/USA/GA_2055/2020
 T490A C3177T C8782T C11824T T18736C C24034T T26729C G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325573
 2020-03-xx 2020-04-10
 United States SARS-CoV-2/human/USA/GA_2120/2020
 T490A C3177T C8782T T18736C C24034T T26729C C27635Y T27698G G28077C C28093Y T28144C A29700G AAAAAAAAAAAAAAAAAAAAA29883-

MT325574
 2020-03-xx 2020-04-10
 United States SARS-CoV-2/human/USA/GA_2185/2020
 C8782T C16466Y C17747T A17858G C18060T GG18505RK T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT621560
 2020-03-xx 2020-06-15
 China SARS-CoV-2/human/HKG/HKU_HK/2020
 C1663T C8782T A18314G G22661T CTAATTCTCCTCGGCGGGCACGTAGTGTAG23595- C24034T T26729C G28077C T28144C C29051G

MT951944
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0575/2020
 ATTA1- C241T C3037T C13335T C14408T A23403G C29002T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT951945
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T G29868R C29870A

MT951946
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0578/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

MT951947
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0579/2020
 ATTAAAGGTTTA1- G1440A G2891A A6944G C9430T A29871R AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT951948
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G5542C C14408T A23403G G26063T C27046T GGG28881AAC A29871R AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT951949
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0581/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT951950
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0582/2020
 ATTA1- C241T C1059T C3037T C10156T C14408T A23403G G25563T

MT951951
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0583/2020
 C1912T C2676T C8782T A22606T T24725G T28144C G28878A G29742A A29874T AAAAAAAAAAAAAAAAAAAAA29883-

MT951952
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C C29870A

MT951953
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T C1059T C3037T G8676T C14408T C20104T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT951955
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0588/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T

MT951956
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0589/2020
 ATTAA1- C241T C1059T A2380G C3037T C6310T C14408T C14925T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT951957
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G8201A C12115T C14408T A23403G G25563T G29868A C29870A

MT951958
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0591/2020
 AT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT951959
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0592/2020
 ATTAAAGGTTT1- C241T C1059T A2380G C3037T C14408T C14925T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

MT951960
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0593/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C10712T C14408T A23403G T25304C G25563T C28890T

MT951962
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0595/2020
 AT1- T490A C3177T C6040T C8357T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G C29870A

MT951963
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1473T C2416T C3037T T5338C C10712T C14408T A23403G G25563T C29870A

MT951964
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0599/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T C14408T A23403G G25563T

MT951965
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0600/2020
 AT1- C241T C2416T C3037T G4523A A10323G C10712T C14408T A23403G G25563T

MT951966
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T G16917T C17747T A17858G C18060T A24694T C26256T T28144C TCACCGAGGCCACGCGGAG29729-

MT951967
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C14408T A23403G G25563T

MT951968
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1918C C3037T C14408T C18877T A23403G G25563T G25906T

MT951969
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2416T C3037T C3140T T5338C C10712T C14408T A23403G G25563T

MT951970
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T

MT951971
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T A8633G C14408T A23403G G25563T G29736T C29870A

MT951972
 2020-03-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A652T C1059T C3037T C14408T A23403G G25563T C27688T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_420144
 2020-04-01 2020-04-05
 Georgia hCoV-19/Georgia/Tb-1679/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421574
 2020-04-01 2020-04-09
 South Africa hCoV-19/South Africa/KRISP-07/2020
 C241T C3037T C14408T C16376T A23403G

EPI_ISL_421575
 2020-04-01 2020-04-09
 South Africa hCoV-19/South Africa/KRISP-011/2020
 C241T C3037T C14408T C16376T A23403G

EPI_ISL_421660
 2020-04-01 2020-04-09
 United States hCoV-19/USA/OH-OSUP0109/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C11960A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_421675
 2020-04-01 2020-04-09
 United States hCoV-19/USA/OH-OSUP0112/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G T29859G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_421939
 2020-04-01 2020-04-09
 United Kingdom hCoV-19/England/20144018704/2020
 G11083T C14805T T16906C A17066W T17247C T22389Y G26144T

EPI_ISL_421964
 2020-04-01 2020-04-09
 United Kingdom hCoV-19/England/20144076304/2020
 C241T C3037T C13730T C14408T G19677K A23403G G25429T

EPI_ISL_421982
 2020-04-01 2020-04-09
 United Kingdom hCoV-19/England/20146019704/2020
 C241T C3037T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_422600 LR878030
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T A12121G C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422601 LR878032
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11596T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422602 LR878039
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G T26732C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422603 LR878042
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T C29459T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422604 LR878047
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T C29459T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422605 LR878044
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422606 LR878046
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17125T T17247C G26144T G27201T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422607 LR878038
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G11083T C14805T T17247C G26144T C29459T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422608 LR878045
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677T A23403G T25068C GGG28881AAC G29179T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422609 LR878040
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7173T C14408T G20134T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422610 LR878043
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C8293A C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422611 LR878041
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3058G C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422612 LR878050
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T T10561C C14408T C15324T A23403G C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422615 LR878052
 2020-04-01 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423559
 2020-04-01 2020-04-12
 United Kingdom hCoV-19/England/20144071504/2020
 A2480G C2558T C9438Y G11083T C14805T C17304T C23638Y T25228C G26144T

EPI_ISL_423570
 2020-04-01 2020-04-12
 United Kingdom hCoV-19/England/20144076204/2020
 C241T C3037T C13730T C14408T G16975K A23403G G25429T

EPI_ISL_423573
 2020-04-01 2020-04-12
 United Kingdom hCoV-19/England/20146004804/2020
 C241T C3037T C8025T C14408T A20268G G22104T A23403G G29734C

EPI_ISL_423574
 2020-04-01 2020-04-12
 United Kingdom hCoV-19/England/20146005804/2020
 ATG1605-

EPI_ISL_424930
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC123/2020
 C241T C1059T C1917T C3037T T6703C G10981T C14408T G20005A A23403G G25563T

EPI_ISL_424931
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC124/2020
 C241T C1059T C1917T C3037T T6703C G10981T C14408T G20005A A23403G G25563T

EPI_ISL_424932
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC125/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424933
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC126/2020
 C241T C3037T C14408T C21575T A23403G GGG28881AAC

EPI_ISL_424934
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC127/2020
 C241T C1059T G1181T C3037T C11916T C14408T C18998T A23403G G25563T G29540A A29776G A29782G T29845C

EPI_ISL_424935
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC128/2020
 C241T C1059T C3037T C8118T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_424936
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC129/2020
 C241T C1059T C3037T C11916T T13212A C14408T C18998T A23403G G25563T G29540A

EPI_ISL_424937
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC130/2020
 C241T C1059T C3037T C14408T G14792T C15763T A23403G G25563T

EPI_ISL_424938
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC131/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424939
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC132/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_424940
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC133/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_424941
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC134/2020
 C241T C1059T C3037T C5497T C14408T A23403G G25218T G25563T

EPI_ISL_424942
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC135/2020
 C241T C1059T C3037T C11916T C14408T T17661C A23403G C25487T G25563T C28728T

EPI_ISL_424943
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC136/2020
 C241T C1059T C3037T C5886T A9372G C11916T C14408T C18998T A20553G A23403G G25563T G29540A

EPI_ISL_424944
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC137/2020
 C241T G677A C1059T C3037T C14408T A23403G G25563T G25855T

EPI_ISL_424946
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC139/2020
 C241T C1059T C3037T C11916T C14408T C14931T C18998T A23403G G25563T G29540A

EPI_ISL_424947
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC140/2020
 C241T C3037T C14408T G18318A C18877T A23403G G25563T

EPI_ISL_424948
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC141/2020
 C241T C1059T C3037T A5637G C11916T C14408T C17118T A23403G G25563T

EPI_ISL_424949
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC142/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G C25169T G25563T G29540A

EPI_ISL_424950
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC143/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424951
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC144/2020
 C241T C1059T C3037T A3546T C11916T C14408T C18998T A23403G G25563T G29239A G29477T G29540A

EPI_ISL_424952
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC145/2020
 C241T C1059T C3037T C14408T TTT21990- A23403G G25563T

EPI_ISL_424953
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC146/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T G20342A A23403G G25563T G29540A

EPI_ISL_424954
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC147/2020
 C241T C1059T C3037T C14408T G14580T C22096T A23403G G25563T

EPI_ISL_424955
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC148/2020
 C241T C1059T C3037T C3924T C14408T G18090A A23403G G25563T G29179T

EPI_ISL_424957
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC150/2020
 C241T C3037T C14408T G15543T A23403G C25317T GGG28881AAC C29370T

EPI_ISL_424958
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC151/2020
 C241T C1059T C3037T C11916T C14408T C14925T C18998T A23403G G25563T G29540A

EPI_ISL_424959
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC152/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_424962
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC155/2020
 C241T C1059T C3037T A6707G C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_424963
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC156/2020
 C241T C3037T C6543T C14408T C18877T A23403G G25563T

EPI_ISL_424964
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC157/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T A27363C C27807T G29540A

EPI_ISL_424965
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC158/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_424966
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC159/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_424968
 2020-04-01 2020-04-14
 United States hCoV-19/USA/NY-NYUMC161/2020
 C241T C1059T C3037T C14408T A23403G C23525T G25563T

EPI_ISL_425153
 2020-04-01 2020-04-14
 United States hCoV-19/USA/WI-UW-96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C829T G6454T C8782T G16381A C16428T T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425243
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73800/2020
 C241T C3037T G5425T C14408T A23403G G23610A C25350T

EPI_ISL_425244
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7381F/2020
 C241T C3037T C14408T C16289T A23403G A23801G G25429T G29711C

EPI_ISL_425263
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-739D0/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_425267
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73A19/2020
 A2480G C2558T G7393T G11083T C14805T C21639T G26144T

EPI_ISL_425268
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73A28/2020
 C241T C3037T T4591C C14408T T19839C A23403G GGG28881AAC

EPI_ISL_425435
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76E92/2020
 C241T C3037T C14408T T17835C A23403G

EPI_ISL_425436
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76EB0/2020
 A2480G C2558T A10323G G11083T C14805T C18652T G26144T G26529T A27809T

EPI_ISL_425443
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76F9F/2020
 C241T C1684T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC

EPI_ISL_425446
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76FCC/2020
 C241T C3037T T7020C C14408T A23403G GGG28881AAC

EPI_ISL_425449
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76FF9/2020
 C241T G2144T C3037T C14408T A23403G C25350T

EPI_ISL_425451
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-77013/2020
 C1314T G11083T C11575T C14805T T17247C G26144T T28852C

EPI_ISL_425453
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-77031/2020
 C241T C3037T C3373A C3923A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_425457
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/England/CAMB-7707D/2020
 G11083T C14422T C14805T C23707T G26144T G26779T G29140C

EPI_ISL_426013
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB530/2020
 C988T T2981C G11083T C14805T T17247C G26144T C29585T

EPI_ISL_426014
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB533/2020
 C988T G11083T C14805T T17247C G26144T C26735T C29585T

EPI_ISL_426020
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB561/2020
 C241T C313T C3037T T3268C C14408T A23403G GGG28881AAC

EPI_ISL_426021
 2020-04-01 2020-04-14
 United Kingdom hCoV-19/Scotland/EDB562/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_426464 MT350246
 2020-04-01 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0056/2020
 ATTAAA1- C6027T A10236G G11083T C14805T T17247C T23599C G26144T C26351T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_426556
 2020-04-01 2020-04-17
 United States hCoV-19/USA/AZ-TG272213/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426557
 2020-04-01 2020-04-17
 United States hCoV-19/USA/AZ-TG272215/2020
 C241T C1059T T1211G C3037T C5301T C14408T A23403G G25563T C27937T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426564
 2020-04-01 2020-04-17
 United States hCoV-19/USA/AZ-TG273304/2020
 C241T C3037T T3982C C9534A C14408T C18877T A23403G G25563T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426565
 2020-04-01 2020-04-17
 United States hCoV-19/USA/AZ-TG273308/2020
 C241T C1059T C3037T C14408T A14747G C16658T A20755C A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426566
 2020-04-01 2020-04-17
 United States hCoV-19/USA/AZ-TG273310/2020
 C241T C1059T C3037T C14408T A14747G C16658T A20755C T21872A T21891A A23403G C24374T G25563T C27131T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426567
 2020-04-01 2020-04-17
 United States hCoV-19/USA/AZ-TG273314/2020
 C241T C1059T C3037T C14408T A14747G C16658T A20755C A23403G G25563T A29872G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426617
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC162/2020
 C241T C1059T C3037T A3416C C14408T A23403G G25563T

EPI_ISL_426618
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC163/2020
 C241T C1059T C3037T C4113T C11916T C14408T C17550T C18998T A23403G G25563T G29540A

EPI_ISL_426619
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC164/2020
 C241T C1059T C3037T C14408T A23403G G25563T T26171A

EPI_ISL_426620
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC165/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_426621
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC166/2020
 C241T C1059T C3037T G10261T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_426622
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC167/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_426623
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC168/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_426624
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC169/2020
 C241T T1918C C3037T C14408T C18877T A23403G G25563T

EPI_ISL_426625
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC170/2020
 C241T C1059T C3037T A5914G C14408T A20755C A23403G G25563T

EPI_ISL_426626
 2020-04-01 2020-04-17
 United States hCoV-19/USA/NY-NYUMC171/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C28724T GGG28881AAC

EPI_ISL_427238 MT358743
 2020-04-01 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4068/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAA29897-

EPI_ISL_427239 MT358744
 2020-04-01 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4082/2020
 ATTAAA1- GG7AV C241T C1059T C3037T C6312T T13932C C14408T T21146A G21151T A23403G G25563T G29553A

EPI_ISL_427245 MT358644
 2020-04-01 2020-04-17
 United States SARS-CoV-2/human/USA/WA-UW-4180/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A31T AAC34TTT C241T C1059T C3037T C12102T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_427469
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC172/2020
 C241T C3037T C12747T C14408T A23403G A25505C GGG28881AAC

EPI_ISL_427470
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC173/2020
 T13C C241T C1059T C3037T C8078T C14408T T19521C A23403G G25563T A28615G

EPI_ISL_427471
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC174/2020
 C241T C3037T C14408T C18877T A23403G G25563T C28866T

EPI_ISL_427472
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC175/2020
 C241T C1059T C3037T C10851T C14408T A23403G C24964T G25563T

EPI_ISL_427473
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC177/2020
 C241T C3037T G12038A C14408T C18877T A23403G G25563T G26763T

EPI_ISL_427474
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC178/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427475
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC179/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427476
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC180/2020
 C241T C1059T C3037T C14408T C17518T A23403G G25563T

EPI_ISL_427477
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC181/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_427478
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC182/2020
 C241T C1437T C3037T C14408T C18877T A23403G G25563T C25584T

EPI_ISL_427479
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC183/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26625T

EPI_ISL_427480
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC184/2020
 C241T C1059T C3037T C11916T G12545A C14408T C18998T A23403G G25563T G29540A

EPI_ISL_427481
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC185/2020
 C241T C1059T G2075A C3037T G12131A C14408T A23403G G25563T

EPI_ISL_427482
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC186/2020
 C241T C1059T G2635A C3037T C10341T C11916T C14408T C18998T C19884T T22441C A23403G G25563T G29540A

EPI_ISL_427484
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC188/2020
 C8078T G10754A G11083T C14805T T17247C A25656G G26144T

EPI_ISL_427485
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC189/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427487
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC192/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26625T C26895T A27983T

EPI_ISL_427488
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC193/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29402T G29540A

EPI_ISL_427489
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC194/2020
 C241T C1059T C3037T C5842T C14408T G15438T A23403G G25563T

EPI_ISL_427490
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC195/2020
 C241T C1059T C3037T G6536T C13255T C14408T C21736T A23403G G25563T

EPI_ISL_427491
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC196/2020
 C241T C1059T C3037T C14408T C21552T A23403G G25563T

EPI_ISL_427492
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC197/2020
 C241T C1059T C3037T C9264T C14408T A23403G G25563T

EPI_ISL_427493
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC198/2020
 C241T C1059T C3037T C14408T C18364T A23403G G25563T

EPI_ISL_427494
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC199/2020
 C241T C539T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427495
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC200/2020
 C241T C3037T C14408T C18877T A23403G G25563T TA29760-

EPI_ISL_427498
 2020-04-01 2020-04-18
 United States hCoV-19/USA/NY-NYUMC203/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T T28105C G29540A

EPI_ISL_427524
 2020-04-01 2020-04-19
 United States hCoV-19/USA/NY-NYUMC176/2020
 C8078T G11083T C14805T T17247C G26144T T28251G CA28253TC

EPI_ISL_427627
 2020-04-01 2020-04-19
 United States hCoV-19/USA/NY-NYUMC227/2020
 C241T C1059T C3037T C5812T C14408T C22388T A23403G G25563T

EPI_ISL_428728
 2020-04-01 2020-04-21
 United States hCoV-19/USA/WI-UW-254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3811T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428878
 2020-04-01 2020-04-22
 Russia hCoV-19/Russia/Omsk-89001/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_428907
 2020-04-01 2020-04-22
 Russia hCoV-19/Russia/Sakha-89702/2020
 C241T C3037T C14408T A23403G A26650G GGG28881AAC

EPI_ISL_428911
 2020-04-01 2020-04-22
 Russia hCoV-19/Russia/Buryatia-88903/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_428943
 2020-04-01 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS6969569/2020
 A187G C241T C3037T C14408T G17014T A23403G C27727T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_428944
 2020-04-01 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS1387711/2020
 C241T A618G C3037T A7770G C14408T C15324T A23403G C26499G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_428956
 2020-04-01 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS6854244/2020
 A187G C241T C3037T C14408T G17014T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_428959
 2020-04-01 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS4295690/2020
 G1440A C1593T G2891A C25721T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_429722
 2020-04-01 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS6137379/2020
 C241T C1059T C3037T C14408T C16750T A23403G G25563T G29705T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_429989 MT415912
 2020-04-01 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0092/2020
 ATTAAAGGTT1- C241T C1059T C3037T G14118T C14408T A23403G G25563T C29870A

EPI_ISL_430130 MT627631
 2020-04-01 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S276/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430147 MT627622
 2020-04-01 2020-04-26
 United States SARS-CoV-2/human/USA/WA-S293/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430352
 2020-04-01 2020-04-26
 United States hCoV-19/USA/NY-NYUMC325/2020
 C241T C3037T T6691C C14408T C18877T A23403G G25563T G26730T G27948T

EPI_ISL_430353
 2020-04-01 2020-04-26
 United States hCoV-19/USA/NY-NYUMC326/2020
 C241T C1059T C1917T C3037T C4898T C11442T G14118A C14408T G22225T A23403G G25563T G27441T

EPI_ISL_430547 MT451692
 2020-04-01 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1011/2020
 C241T C2937T C3037T C14408T C19402Y A20268G A23403G C24096Y C28887Y

EPI_ISL_430803
 2020-04-01 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C12213T C14408T A20268G C22088T A23403G C25463Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_430804
 2020-04-01 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C14408T A20268G A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_430805
 2020-04-01 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1473T C3037T C14408T C16869T A23403G GGG28881AAC G29473A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_430869 MT412226
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5178/2020
 A1- C241T C1059T C3037T A6729C C14408T A23403G G25563T G29553A

EPI_ISL_430873 MT412229
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5189/2020
 ATTAAAGGTTTA1- C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_430874 MT412230
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_430899 MT412256
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C241T C1059T C3037T C14408T A23403G T24565G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430933 MT412290
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T G4148T C8782T C17747T A17858G C18060T TTA21991- T28144C -29904AAAA

EPI_ISL_430936 MT412293
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6173/2020
 ATTAAAGG1- A31T A34T C36T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAA29891-

EPI_ISL_430937 MT412294
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6178/2020
 ATTAAAGGT1- A31T C36T C241T G740A G872T C1059T C3037T C12880T C14408T A23403G G25563T G28899C G28985T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_430939 MT412296
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-4243/2020
 ATTAAAGGTT1- C36T C1469T A6616G G11083T C14805T T17247C G26144T G29254T G29864A TG29867AA C29870A

EPI_ISL_430953 MT412311
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31W C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A TG29867-A C29870A

EPI_ISL_430954 MT412312
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6186/2020
 A1- C36T C8782T C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAA

EPI_ISL_430955 MT412313
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C36T C241T T833C C1059T C3037T C12915T C14408T C20178T A23403G G25563T G25644T C27498T C27964T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_430957 MT412314
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6240/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T -29904AAAAAAAAAA

EPI_ISL_430960 MT412317
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-6259/2020
 ATTAAAGGTT1- C36T C241T C1059T C3037T C14408T C16173T A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_430961 MT412318
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-6270/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_430962 MT412319
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-6271/2020
 AT1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_430965 MT412322
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-6314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C1059T C3037T C12854T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430968 MT412325
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6331/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AACC34TTTA C241T C1059T C3037T T5485G C14408T A23403G G25563T G29553A -29904AAAAAAAAAAAA

EPI_ISL_430970 MT412327
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/ID-UW-6349/2020
 A1- A4D C36T C241T T833C C1059T C3037T C11758T C14408T C14786T C15720T G21641T A23403G G25563T C27964T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_430972 MT412329
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-6380/2020
 ATTAAAG1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430973 MT412330
 2020-04-01 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-6385/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T GTTATG515- C1059T A2018G C3037T C5622T C14408T T21995C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_432176
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2771D/2020
 G1440A C1722T G2891A C10401T G28851T

EPI_ISL_432185
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27CA5/2020
 AT1- C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_432192
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27CD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C6990T G12988T C14408T A23403G C26111T

EPI_ISL_432199
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29F13/2020
 T2K C241T C3037T C5506T G14241T C14408T C19151T A23403G G23612A

EPI_ISL_432210
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-277B3/2020
 C241T C3037T C14408T C15720T A23403G

EPI_ISL_432212
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27944/2020
 ATTA1- A34W C193T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_432217
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27A32/2020
 ATTA1- C241T C3037T C4230Y C6990T C8895T C14408T C15857T A23403G G26109T C29200T

EPI_ISL_432221
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27917/2020
 C28T G1820A C4965T G11083T C14805T T17247C G26144T

EPI_ISL_432233
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-275D7/2020
 C241T C1059T C3037T C10376T C14408T G18583T A23403G G24368T G25563T G29773T

EPI_ISL_432236
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27D2A/2020
 A1- C241T C3037T C6990T G13975T C14408T C19374Y A23403G G25650T C29200T C29386Y

EPI_ISL_432239
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27D39/2020
 C241T C3037T T5573C G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC

EPI_ISL_432240
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27BA8/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_432245
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27A23/2020
 C241T C3037T C6990T C14408T A23403G

EPI_ISL_432256
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-275F5/2020
 C241T C3037T T4186C C6027T G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_432258
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2757D/2020
 A1- C241T C1059T C3037T C14408T C16329T A18639G A23403G C23536T G25563T C25731T C29625T

EPI_ISL_432270
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27935/2020
 AT1- C1346T G11083T G13627T C14805T C15540T C21575T G26144T A28338G

EPI_ISL_432287
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2772C/2020
 A1- C241T C3037T C7945T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_432310
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27BB7/2020
 ATTA1- C241T C3037T C14408T G20176K A23403G GGG28881AAC

EPI_ISL_432316
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-274CB/2020
 A1- C241T C3037T G11083T C14408T A23403G A25575C

EPI_ISL_432542
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CD315/2020
 ATG1605- G27703T C27752T

EPI_ISL_432579
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CED9E/2020
 A2437C A2480G C2558T C6361T G11083T C14805T A15426G G26144T G28347T

EPI_ISL_432614
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-D0731/2020
 

EPI_ISL_432727
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C1645/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432732
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C18E5/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432744
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C2310/2020
 C241T C3037T G11083T C14408T A23403G C25433T C26191T GGG28881AAC

EPI_ISL_432790
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C45BE/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432812
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C5D79/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432825
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C6789/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432859
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C81D4/2020
 C241T C958T C3037T C14408T A23403G C27046T GGG28881AAC C29627T

EPI_ISL_432861
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C8338/2020
 C2558T G11083T C11902T C14805T G26144T G28851T

EPI_ISL_432979
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F237/2020
 A2480G C2558T G11083T C14805T C25688T G26144T

EPI_ISL_432984
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F282/2020
 C241T C3037T C14408T A23403G C28311T

EPI_ISL_432988
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F2DD/2020
 A8214G A10323G G11083T G13627T C14805T C15540T G26144T A28338G

EPI_ISL_432990
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F2FB/2020
 G3052A C6027T G11083T C14805T C15277T T18771C G26144T

EPI_ISL_432992
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F334/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433200
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB573/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433207
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB589/2020
 C8782T C17470T C26088T T28144C

EPI_ISL_433211
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB598/2020
 C241T C3037T C14408T A23403G A24862G C27493T

EPI_ISL_433214
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB607/2020
 C3787T C16362T C19763T

EPI_ISL_433218
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB625/2020
 C241T C1812T C3037T C11200T C14408T A23403G GGG28881AAC

EPI_ISL_433224
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB694/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_433225
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB695/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433226
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB703/2020
 C241T C2862A C3037T C14408T G19677T A23403G GGG28881AAC

EPI_ISL_433227
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB707/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_433549
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T5551C C7423T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433550
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433554
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C26781T C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433561
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2196C G11083T C14805T C17172A T17247C C25603T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433563
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8626T G11540T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433567
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C5157T C8626T C12710T C17555T T19209C C27213T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433568
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1912T C8782T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433584
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A761G C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433588
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433589
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C8626T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433684
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73CC8/2020
 C241T C3037T C4582T A12998G C13378T C14408T A23403G GGG28881AAC

EPI_ISL_433688
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73D2F/2020
 C241T C3037T C14408T A23403G

EPI_ISL_433689
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73D3E/2020
 C241T C3037T C14408T G20134T A23403G GGG28881AAC

EPI_ISL_433691
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73D5C/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433693
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73D7A/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_433697
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73DB6/2020
 C241T C3037T C3373A C3923A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_433698
 2020-04-01 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73DC5/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434065 MT632879
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S305/2020
 C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A

EPI_ISL_434070 MT632910
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S310/2020
 C3784T C8782T C17747T A17858G C18060T T28144C C29733T

EPI_ISL_434072 MT633037
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S312/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434076 MT632914
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S316/2020
 C8782T C17747T A17858G C18060T C18264T C24919T T28144C

EPI_ISL_434080 MT632865
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S320/2020
 C8782T C17747T A17858G C18060T C18264T C24919T G28077T T28144C

EPI_ISL_434084 MT632859
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S324/2020
 G910T C3311A C8782T A17105G G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434086 MT632931
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S326/2020
 C8782T C17747T A17858G C18060T C18264T C24919T T28144C

EPI_ISL_434089 MT633010
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S329/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434097 MT632950
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S337/2020
 G3231T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434107 MT632836
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S347/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434108 MT632919
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S348/2020
 C8782T C17747T A17858G C18060T A27924G T28144C

EPI_ISL_434200 MT633035
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S440/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434204 MT632863
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S444/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434205 MT632960
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S445/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434206 MT632952
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S446/2020
 C8782T C17747T A17858G C18060T C22687T T28144C

EPI_ISL_434207 MT632916
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S447/2020
 C8782T C17747T A17858G C18060T C18264T C24919T T28144C

EPI_ISL_434208 MT633013
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S448/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434225 MT632876
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S465/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434226 MT632804
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S466/2020
 T13C C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434234 MT632955
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S474/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434235 MT632936
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S475/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434238 MT633030
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S478/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434245 MT632974
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S485/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434246 MT632993
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S486/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434248 MT632884
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S488/2020
 C8782T G12347A C17747T A17858G C18060T T28144C C28744T

EPI_ISL_434253 MT632981
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S493/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434254 MT632920
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S494/2020
 C8782T C17747T A17858G C18060T C26058T T28144C

EPI_ISL_434255 MT632858
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S495/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T G29553A

EPI_ISL_434258 MT633038
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S498/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434264 MT633027
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S504/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434266 MT632976
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S506/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434272 MT633018
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S512/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434273 MT633036
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S513/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434276 MT632998
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S516/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434282 MT633023
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S522/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434284 MT633016
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S524/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434285 MT632957
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S525/2020
 C8782T C16173T C17747T A17858G C18060T T28144C

EPI_ISL_434317 MT633021
 2020-04-01 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S557/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434657
 2020-04-01 2020-04-30
 Sweden hCoV-19/Sweden/20-06813/2020
 C241T G2945T C3037T C8025T C8290T C14408T A16941G A20268G A23403G G29734C

EPI_ISL_434941
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH347/2020
 C241T C2416T C3037T C14408T T20827C A23403G C25169T G25563T

EPI_ISL_434943
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH349/2020
 C241T C1059T C3037T C14408T C17939T A23403G G25429T G25563T C25919T C27964T

EPI_ISL_434966
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH378/2020
 T7789C C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434970
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH382/2020
 C241T C3037T C14408T A23403G

EPI_ISL_434976
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH389/2020
 C241T C1059T C3037T C5693T G6309T C10188T C14408T A23403G T24982C G25563T C27964T C28657T

EPI_ISL_434982
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH395/2020
 T490A C3177T C8782T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_434987
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH400/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C G20005A C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_434998
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH413/2020
 C241T C1684T C3037T G4631A C6310T C14408T C17766T G18898T A23403G A25315G C25413T GGG28881AAC

EPI_ISL_434999
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH415/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_435000
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH416/2020
 C241T C1059T C3037T C14408T A18082G A23403G G25563T C27964T

EPI_ISL_435001
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH417/2020
 C241T C1059T C3037T C14408T C23277T A23403G G25563T C27964T C28099T

EPI_ISL_435002
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH418/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435003
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH420/2020
 C241T C1059T C3037T T14104C C14408T A23403G G25563T C27964T

EPI_ISL_435005
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH422/2020
 C241T C1059T C3037T C8092T C14408T A23403G G25563T C27964T

EPI_ISL_435006
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH423/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C G21051A C24034T T26729C T26972C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435007
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH424/2020
 C241T C1059T C3037T C10319T C14408T C17285T A23403G G25563T C27964T

EPI_ISL_435008
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH425/2020
 C241T C1059T C3037T G4720A C14408T A23403G G25563T C27741T G28003T

EPI_ISL_435009
 2020-04-01 2020-05-01
 United States hCoV-19/USA/TX-HMH426/2020
 C241T C1059T C3037T G4720A C14408T A23403G G25563T C27741T G28003T

EPI_ISL_435679
 2020-04-01 2020-05-05
 Singapore hCoV-19/Singapore/74/2020
 ATTAAAGGTTTATACCT1- C6310A C6312A A8530R G11083T C13730T C19524T C23929T C28311T GGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29705-

EPI_ISL_435680
 2020-04-01 2020-05-05
 Singapore hCoV-19/Singapore/75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- T1998W C6310A C6312A G11083T C13730T C17883Y C19524T C23929T G25770K C28311T C29642Y CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_436046
 2020-04-01 2020-05-05
 United States hCoV-19/USA/VI-CDC-1993/2020
 C241T G2813K C3037T C14408T G16181K G18325T A23403G GGG28881AAC A28911R AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436569 MT706383
 2020-04-01 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9195T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436570 MT706384
 2020-04-01 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9195T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436634 MT706446
 2020-04-01 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437192
 2020-04-01 2020-05-08
 Indonesia hCoV-19/Indonesia/JKT-EIJK04/2020
 C14636T G15672T C23277T C24026T A29314T

EPI_ISL_437225
 2020-04-01 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0026/2020
 C241T T1165C C3037T G11083T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437278
 2020-04-01 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0084/2020
 C241T C3037T C14408T G20980T A23403G

EPI_ISL_437279
 2020-04-01 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0085/2020
 A187G C241T C3037T C14408T G19086T A23403G

EPI_ISL_437280
 2020-04-01 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0086/2020
 C241T C3037T C14408T G19825T A23403G A28855G GGG28881AAC

EPI_ISL_437282
 2020-04-01 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0088/2020
 C241T T1165C C3037T G11083T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437475
 2020-04-01 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah64/2020
 T3G AGGTTTATAC6GA C16T C8782T G14122T G22468T T28144C G28878A G29742A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_437496
 2020-04-01 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah59/2020
 C241T C3037T C14408T C16915T C18877T A23403G T24202C G25563T C26735T

EPI_ISL_437497
 2020-04-01 2020-05-10
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah60/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437630
 2020-04-01 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1046/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T G28812T

EPI_ISL_437633
 2020-04-01 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1096/2020
 C241T C1059T C3037T T8788C G9479T C14408T C16049T A23403G G25563T G26951A

EPI_ISL_437634
 2020-04-01 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1100/2020
 C241T C1059T C3037T T12427C C14408T A23403G G23755T G25563T C25672T C29200T

EPI_ISL_437683
 2020-04-01 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-991/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29777T

EPI_ISL_437754
 2020-04-01 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah61/2020
 C241T C3037T C14408T A23403G

EPI_ISL_437755
 2020-04-01 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah66/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_437756
 2020-04-01 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah68/2020
 C241T C3037T C14408T C15017T A23403G GGG28881AAC

EPI_ISL_437757
 2020-04-01 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah70/2020
 C8782T T13728C G22468T T28144C G28878A G29742A

EPI_ISL_437758
 2020-04-01 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah73/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437759
 2020-04-01 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah75/2020
 T3906C C8782T C10576T G22468T C26333T T28144C G28878A G29742A

EPI_ISL_437760
 2020-04-01 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Jeddah76/2020
 C8782T C10576T C14408T C16733A G22468T C26333T T28144C G28878A

EPI_ISL_437800 MT482147
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G20991T A23403G G25563T C25585T C29870A

EPI_ISL_437813 MT461613
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4051/2020
 ATTAAAG1- TA11GT TC18GG C222T A3558G A6693G C8782T C17747T A17858G C18060T T28144C G29868A C29870A

EPI_ISL_437814 MT461614
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4058/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C7728A C14408T C20703T A23403G G25563T G29553A G29868A C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_437815 MT461615
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4061/2020
 A1C TA3GG TA11GT TCC18GGG C8782T C17747T A17858G C18060T T28144C

EPI_ISL_437816 MT461616
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4065/2020
 ATTAAAGGTTTATAC1- TT7825KK C7844A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_437817 MT461617
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-4067/2020
 ATTAAAGG1- TA11GT TCCC18GGGA C8782T A10844G C17747T A17858G C18060T T28144C -29904AAAAAAAAAAAAAA

EPI_ISL_437818 MT461618
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-4089/2020
 AT1- TA3GG TA11GT TCCC18GGGA C147T C241T C1059T C3037T C6040T C14408T A23403G G25563T -29904AAAAAAAAAAAAAAAA

EPI_ISL_437819 MT461619
 2020-04-01 2020-05-11
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-4097/2020
 A1G AAA4GTT TA11GT C241T C1059T C3037T C14408T G20014T A23403G G25563T G29553A

EPI_ISL_437910 MT459924
 2020-04-01 2020-05-11
 Greece SARS-CoV-2/human/GRC/52_37266/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2480G C2558T G11083T C14805T C20402T G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_438140
 2020-04-01 2020-05-12
 United States hCoV-19/USA/WA-S587/2020
 G237T C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_438515
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7712F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A17799G T20271C G26144T

EPI_ISL_438520
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-77541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C8733T G11083T C14805T T20401G G23868T T25202K G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439371
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7716B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439375
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-77426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C7279T G11083T C12213T C14805T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439447
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-76F26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G4185A G11083T C14805T G26144T C29013Y G29414R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439459
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7717A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1514T A2480G C2558T G11083T C14805T G26144T G28487C G29140T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_439528
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7781B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9565Y C11653T C14408T A23403G GGG28881AAC AA29521WR AA29902-

EPI_ISL_440694
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/BRIS-122C5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T T25202K GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_441296
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-79C77/2020
 ATTAAAGGT1- C241T C3037T C14408T G18627A A20268G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_441312
 2020-04-01 2020-05-12
 United Kingdom hCoV-19/England/CAMB-77E46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_443279
 2020-04-01 2020-05-12
 France hCoV-19/France/B5434/2020
 C36T C241T C690T C1059T C3037T T13006C C14408T A23403G G25563T C25688T G28378T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_443280
 2020-04-01 2020-05-12
 France hCoV-19/France/B5447/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29513T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_444708
 2020-04-01 2020-05-14
 United States hCoV-19/USA/NY-NYUMC591/2020
 C241T C1059T C1917T C3037T C14408T C20405T A23403G G25563T

EPI_ISL_444728
 2020-04-01 2020-05-14
 United States hCoV-19/USA/NY-NYUMC611/2020
 C241T C1059T C3037T C14408T C21575T A23403G G25563T C27519T

EPI_ISL_444729
 2020-04-01 2020-05-14
 United States hCoV-19/USA/NY-NYUMC612/2020
 C241T C1059T C3037T C14408T G14792T C15763T A23403G G25563T

EPI_ISL_444731
 2020-04-01 2020-05-14
 United States hCoV-19/USA/NY-NYUMC614/2020
 C241T C1059T C3037T A11755G C14408T A23403G G25563T A26973G

EPI_ISL_444733
 2020-04-01 2020-05-14
 United States hCoV-19/USA/NY-NYUMC616/2020
 C241T C1059T C3037T C6730T C14408T A23403G G25563T

EPI_ISL_445123
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0268/2020
 C241T C1059T C1191T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_445125
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0270/2020
 C241T C1059T C3037T C14408T C18115T C21254T A23403G G25563T C27964T

EPI_ISL_445127
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0272/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_445128
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0273/2020
 C241T C1059T C3037T C10319T C13119T C14408T A23403G G25563T C27964T

EPI_ISL_445133
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0278/2020
 C241T C1059T C3037T G6362A C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_445135
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0280/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C25886T C27509T C27964T

EPI_ISL_445137
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0282/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_445139
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0284/2020
 C241T C1059T C3037T C10319T C14408T G21898A A23403G G25563T C27964T

EPI_ISL_445140
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0285/2020
 C241T C1059T C3037T C10319T C14408T G22708T A23403G G25563T C27964T

EPI_ISL_445145
 2020-04-01 2020-05-15
 United States hCoV-19/USA/LA-SR0290/2020
 C241T C1059T G2900A C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_445227
 2020-04-01 2020-05-15
 Sweden hCoV-19/Sweden/20-06805/2020
 C241T C1059T C3037T C14408T G22273A A23403G G24368T G25563T

EPI_ISL_445228
 2020-04-01 2020-05-15
 Sweden hCoV-19/Sweden/20-06814/2020
 C241T C1059T C2842A G2849T C3037T C14408T A23403G G24368T G25537T G25563T G27463T G29742A

EPI_ISL_445229
 2020-04-01 2020-05-15
 Sweden hCoV-19/Sweden/20-06817/2020
 C241T C3037T A4495G C14195A C14408T A23403G

EPI_ISL_445349
 2020-04-01 2020-05-15
 Chile hCoV-19/Chile/Santiago_52/2020
 A1C T3A C241T A2475G C3037T C14408T A23403G G25477K T27299C GGG28881AAC T29148C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_445350
 2020-04-01 2020-05-15
 Chile hCoV-19/Chile/Santiago_54/2020
 ATTAAAGGTTTATACC1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27804T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_445352
 2020-04-01 2020-05-15
 Chile hCoV-19/Chile/Santiago_56/2020
 AT1TC A4T C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445916
 2020-04-01 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2C815/2020
 C241T AAGTCATTT686- C3037T C6990T C14408T C19961Y C21306T A23403G C28776A C29200T

EPI_ISL_445946
 2020-04-01 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2CAC4/2020
 ATTAAAGGT1- C241T C1059T C3037T G3065T C10376T C14408T G18583T A23403G G24368T G25563T G29773T

EPI_ISL_447019
 2020-04-01 2020-05-16
 Thailand hCoV-19/Thailand/Bangkok-0078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T G14653A C15240T A20284G C28311G T28688C G29737T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_447090 MT506565
 2020-04-01 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20293/2020
 C241T C3037T C14408T C17474T C18877T C23373Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_447265
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/990300724/2020
 A8040G G11083T C14805T T17247C G17590T C17676T G26144T G26660T C29627T AAAAAAAAAAAA29892-

EPI_ISL_447359
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2089866/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447360
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2089863/2020
 C241T C3037T C11916T C14408T C18877T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447361
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2089861/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447366
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2089718/2020
 C241T C2416T C3037T T8053C C14408T A15177G G20489T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447374
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2089366/2020
 C241T C1059T C3037T G7295T C14408T A23403G G23909T G25563T G28346T AAAAAAAAAAAA29892-

EPI_ISL_447375
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2086045/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447380
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2086008/2020
 C241T AAGTCATTT686- C1059T C3037T C6781T C14408T C16616T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447404
 2020-04-01 2020-05-17
 Israel hCoV-19/Israel/2046434/2020
 C241T C1059T C3037T G4925T C10582T C14408T G18391A A20755C C21304T A23403G G25563T G25784T AAAAAAAAAAAA29892-

EPI_ISL_447517
 2020-04-01 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1594T C3037T G9053A C14408T A20268G C20436Y A23403G C24083A G29648T G29737A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447519
 2020-04-01 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_447522
 2020-04-01 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C398T G5150A C8782T C26088T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_447527
 2020-04-01 2020-05-17
 Spain hCoV-19/Spain/Valencia/COV000609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T17126C A20268G A21935C A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_447564
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J212/2020
 ATTAAAGGTTTAT1- C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447565
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C13730T C19524T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_447566
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C6312A G11083T C13730T A21792T C23929T C28311T C29722T

EPI_ISL_447567
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A6081G C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447568
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G3994T C6312A C8139T T10421C G11083T C13730T C23929T C28311T

EPI_ISL_447569
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A1717G G2393T C6310A C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447570
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1820A G5210T C6310A C6312A G11083T C13730T C19524T C23929T C28311T

EPI_ISL_447571
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T A21792T C23929T C24624T C28311T

EPI_ISL_447572
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C506T C6312A G11083T C13730T C23929T C28311T C29774T

EPI_ISL_447573
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- AG55CT A2111T C6312A G11083T C13730T A15491G C18486T T19344C C23929T C28311T A28752C

EPI_ISL_447574
 2020-04-01 2020-05-17
 India hCoV-19/India/CCMB_J208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_447593
 2020-04-01 2020-05-18
 Taiwan hCoV-19/Taiwan/TSGH-34/2020
 A3872T C8782T G15594T C17747T A17858G C18060T G18943C A24694T T25631A T28144C

EPI_ISL_447766
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GUV-92250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447771
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T A23403G G25563T AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_447774
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447775
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_447777
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T C18877T A23403G G25563T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_447778
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C18877T A23403G G25563T G27261T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447779
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C14408T C15810T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447780
 2020-04-01 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T A2018G C3037T C14408T A23403G G25563T ACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29761-

EPI_ISL_447848
 2020-04-01 2020-05-18
 India hCoV-19/India/CCMB_J165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6312A G11083T C11200T C13730T C18176T C18486T C23929T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447849
 2020-04-01 2020-05-18
 India hCoV-19/India/CCMB_J107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C635T C6312A G11083T C13730T C23929T C28253T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447850
 2020-04-01 2020-05-18
 India hCoV-19/India/CCMB_J132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T A21792T C23929T C28311T C29722T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447851
 2020-04-01 2020-05-18
 India hCoV-19/India/CCMB_J223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A6081G G11083T C13730T C24133T G28077T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447852
 2020-04-01 2020-05-18
 India hCoV-19/India/CCMB_J235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1281T C6312A G9652T G11083T C13730T C23929T T25577C C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447853
 2020-04-01 2020-05-18
 India hCoV-19/India/CCMB_J247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C589A G11083T C13011T C13730T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447889 MT481929
 2020-04-01 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1138/2020
 ATTAAAGGTTTA1- C241T GTT669- C1059T C3037T C14408T C18457T A23403G C25487T G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_447891 MT481931
 2020-04-01 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1140/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C9561T C14408T C17410A T21434W A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_449800
 2020-04-01 2020-05-19
 Chile hCoV-19/Chile/Santiago_53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T7310A GT7312AG T7316G T7332C TT7337GA T7342A C7355A T7357A C7389T A8380G C14408T A20268G A23403G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_450326
 2020-04-01 2020-05-20
 India hCoV-19/India/CCMB_J125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- G1820A C6310A C6312A G11083T C13730T C19524T C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450327
 2020-04-01 2020-05-20
 India hCoV-19/India/CCMB_J199/2020
 C6312A G11083T C13730T C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450328
 2020-04-01 2020-05-20
 India hCoV-19/India/CCMB_J283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C19524T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_450329
 2020-04-01 2020-05-20
 India hCoV-19/India/CCMB_J288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_450331
 2020-04-01 2020-05-20
 India hCoV-19/India/CCMB_J220/2020
 ATTAAAGGTTTATACCTTCCCAG1- C6312A G11083T C13730T C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450332
 2020-04-01 2020-05-20
 India hCoV-19/India/CCMB_J222/2020
 ATTAAA1- C15- C1281T C6312A G11083T C13730T C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450401
 2020-04-01 2020-05-21
 United States hCoV-19/USA/NY-NYUMC684/2020
 C241T C1059T C3037T C4158T A8182C C14408T A23403G G25563T

EPI_ISL_450530
 2020-04-01 2020-05-21
 Poland hCoV-19/Poland/1111628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C22571T A23403G CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_450708 MT506893
 2020-04-01 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450721 MT506906
 2020-04-01 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T C21707T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450732
 2020-04-01 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C237/2020
 A187G C241T C3037T C14408T A23403G G25599T

EPI_ISL_450810
 2020-04-01 2020-05-22
 Sweden hCoV-19/Sweden/20-06737/2020
 C241T C3037T C13378T C14408T T20430C A23403G C27679T GGG28881AAC

EPI_ISL_451125
 2020-04-01 2020-05-23
 Australia hCoV-19/Australia/SAP090/2020
 C241T C3037T C6843T G11083T C14408T C17104T A20268G G23282T A23403G C29200T G29734C

EPI_ISL_451126
 2020-04-01 2020-05-23
 Australia hCoV-19/Australia/SAP091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C2416T C3037T C10560T C14408T A23403G G25563T

EPI_ISL_451167
 2020-04-01 2020-05-23
 Belgium hCoV-19/Belgium/UGent-54/2020
 C241T C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_451960 MT507796
 2020-04-01 2020-05-22
 United States SARS-CoV-2/homo sapien/USA/VI-CDC-3849/2020
 C241T C1059T C3037T C9724T C14408T A23403G G25563T TTTAGCC27794- C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451971 MT511066
 2020-04-01 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P10/2020
 C19T C106T C241T C3037T A8072G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_451978 MT511073
 2020-04-01 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P17/2020
 C241T C3037T C14408T G14580T A23403G G29477K C29870M

EPI_ISL_451987 MT511082
 2020-04-01 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P26/2020
 C241T C541T A544G C3037T G4180T T7767C C11704T C14408T G19254T A23403G

EPI_ISL_452148
 2020-04-01 2020-05-26
 Belgium hCoV-19/Belgium/20A38/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C15324T A23403G A28765G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_452189
 2020-04-01 2020-05-27
 Italy hCoV-19/Italy/VR_20COV33-126/2020
 TTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC2- C241T C3037T C14408T A23403G GGG28881AAC C29311T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452234
 2020-04-01 2020-05-27
 Sweden hCoV-19/Sweden/20-07156/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G24368T C24904T G25563T

EPI_ISL_452371
 2020-04-01 2020-05-27
 Spain hCoV-19/Spain/COV002058/2020
 C4891T C8782T T9477A C14805T G25979T C26681T G26713K C27046Y T28144C C28657T C28863T C29870A

EPI_ISL_452809 MT558660
 2020-04-01 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0232/2020
 ATTAAAGGTTTA1- C241T C1059T C1917T C3037T C14408T C20480T C21597G A23403G G25563T G28655T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_453164
 2020-04-01 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB4839/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T G29134A

EPI_ISL_454211
 2020-04-01 2020-05-28
 Portugal hCoV-19/Portugal/PT0487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T C14786T C19884T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454370
 2020-04-01 2020-05-28
 United States hCoV-19/USA/PA-MGEL86/2020
 C241T C1059T C3037T C8481T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454374
 2020-04-01 2020-05-28
 United States hCoV-19/USA/PA-MGEL92/2020
 C241T C1059T C3037T T3909C C5031T C13430T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454380
 2020-04-01 2020-05-28
 United States hCoV-19/USA/PA-MGEL100/2020
 C241T C3037T C5878T C14408T A23403G G25644T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454381
 2020-04-01 2020-05-28
 United States hCoV-19/USA/PA-MGEL102/2020
 C241T C3037T C14408T C18877T A23403G G25563T G28233A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454540
 2020-04-01 2020-05-28
 India hCoV-19/India/NIV-6216/2020
 C6312A C11074T G11083T C13730T G14181A C23929T C28311T A29827T G29830T

EPI_ISL_454639 MT533236
 2020-04-01 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1281/2020
 A1- C337Y T490A C3177T C4475T C6040T C8782T G12478R T18736C C19118T G22403R C24034T T26729C G28077C T28144C C28896G A29700G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_454640 MT533237
 2020-04-01 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T A2018G A3010G C3037T C14408T T21995C A23403G G25563T G28764K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_454775
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10026/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC G29751C AAAAAA29898-

EPI_ISL_454777
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10028/2020
 ATTAAA1- C241T C3037T G11083T C14408T A23403G G24328T C27046T GGG28881AAC AAAAAA29898-

EPI_ISL_455113
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/Flevoland_4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455119
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T TTA21991- G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455249
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455258
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455285
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455287
 2020-04-01 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T G18583A A20268G C20740A C20946T G23120T A23403G C25578T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455441
 2020-04-01 2020-05-29
 Poland hCoV-19/Poland/PL_P28/2020
 C19T C106T C241T C3037T A8072G C14408T A23403G GGG28881AAC

EPI_ISL_455443
 2020-04-01 2020-05-29
 Poland hCoV-19/Poland/PL_P30/2020
 C19T C106T C241T C3037T A8072G C14408T C20801T A23403G GGG28881AAC

EPI_ISL_455448
 2020-04-01 2020-05-29
 Poland hCoV-19/Poland/PL_P35/2020
 C19T C106T C241T C3037T A8072G C14408T C20801T A23403G GGG28881AAC

EPI_ISL_455599
 2020-04-01 2020-06-01
 Australia hCoV-19/Australia/VPRL007/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27128T

EPI_ISL_455994
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL151/2020
 C241T T523A C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455995
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL152/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455996
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL153/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455997
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL154/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455998
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL155/2020
 T184G T490A C3177T C6040T C6843T C8782T C8950T G12478A T18736C C20283T C24034T T26729C G28077C T28144C C28896G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455999
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL156/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456000
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL157/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456001
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL158/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456002
 2020-04-01 2020-06-01
 United States hCoV-19/USA/LA-EVTL159/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T G28985A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_456072
 2020-04-01 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1056/2020
 ATTA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_456073
 2020-04-01 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27297A T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456074
 2020-04-01 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1065/2020
 A1- C241T C622T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_456295
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1890/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_456296
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1891/2020
 C241T C1059T C3037T T5013C C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456297
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1893/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T T26897C G26951A

EPI_ISL_456299
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1897/2020
 C241T C1059T C3037T C10798T C12534T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456304
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1908/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456316
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1937/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456324
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1990/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456326
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1997/2020
 C241T C1059T C3037T T12883C C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456327
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2000/2020
 G1440A G2891A C10507T A28675T C29003A A29242G

EPI_ISL_456328
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2001/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456329
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2002/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456330
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2004/2020
 C241T G393A C3037T C14408T A23403G A24862G

EPI_ISL_456331
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2006/2020
 C241T G393A C3037T C14408T A23403G A24862G

EPI_ISL_456332
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2011/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456334
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2015/2020
 C8782T G11083T C17747T C18060T T28144C

EPI_ISL_456335
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2017/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456336
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2019/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_456338
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2030/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_456339
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2032/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456342
 2020-04-01 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2037/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456904
 2020-04-01 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB2900/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_456953
 2020-04-01 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5041/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_456954
 2020-04-01 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5046/2020
 C241T T1344C C3037T C10798A C13862T C14408T C23327T A23403G C28836T

EPI_ISL_457134
 2020-04-01 2020-06-02
 United Kingdom hCoV-19/England/EXET-135B00/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457181
 2020-04-01 2020-06-02
 United Kingdom hCoV-19/England/EXET-135F13/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_457627
 2020-04-01 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C8514/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_457659
 2020-04-01 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CDA2F/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_458071
 2020-04-01 2020-06-03
 India hCoV-19/India/CCMB_J130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C6312A G11083T C13730T C14408T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458262
 2020-04-01 2020-06-04
 United States hCoV-19/USA/CA-SR0382/2020
 C241T C1059T C3037T A8252G C14408T A23403G G25563T

EPI_ISL_458676
 2020-04-01 2020-06-04
 United Kingdom hCoV-19/England/NORT-28993F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458712
 2020-04-01 2020-06-04
 United Kingdom hCoV-19/England/NORT-289911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14786T A23403G T25099C G25471C TT27580- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459957
 2020-04-01 2020-06-05
 Malaysia hCoV-19/Malaysia/IMR_WC10180/2020
 ATTAAAGGTTT1- C6312A T7621C G11083T C13730T C23929T C25916T C28311T -AAA29874TTGCTCCTGGCT AAAA29880CTGT A29886C A29890T AAAAAAAA29893TTTTTTTT

EPI_ISL_459962
 2020-04-01 2020-06-05
 Germany hCoV-19/Germany/Cento-70001814/2020
 C241T C3037T C14408T G20134T A23403G GGG28881AAC

EPI_ISL_459963
 2020-04-01 2020-06-05
 Germany hCoV-19/Germany/Cento-70004280/2020
 C241T C3037T C14408T G20134T A23403G GGG28881AAC

EPI_ISL_460098 MT520173
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460120 MT520195
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00656/2020
 ATTAAAGGTTTATACCTTCCCA1- G105T C241T C3037T C14408T C18877T G19962A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460131 MT520206
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00267/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460141 MT520216
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00266/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_460144 MT520219
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00274/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460148 MT520223
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00642/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T C3037T C14408T A23403G G25563T A25759G C26447T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460155 MT520230
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00288/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_460157 MT520232
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00297/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460160 MT520235
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00264/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460164 MT520239
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00269/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460169 MT520244
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00285/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460171 MT520246
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00291/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_460172 MT520247
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00276/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460181 MT520256
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460195 MT520270
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00281/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460196 MT520271
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T T29026C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_460198 MT520273
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00445/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T G3892T C14408T G20062T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460210 MT520285
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00280/2020
 ATTAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_460234 MT520309
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00287/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_460243 MT520318
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460249 MT520324
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460255 MT520330
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T C16887T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_460265 MT520340
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00298/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C4423T C10207T A12004G C14408T A23403G C29774T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460274 MT520349
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00294/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460282 MT520357
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00645/2020
 ATTAAAGGTTTATA1- C241T C2416T C3037T T10216C C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460294 MT520369
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C7926T C14408T T15648C C21575T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_460308 MT520383
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00447/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460342 MT520417
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T G1868A C3037T G3892T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_460352 MT520427
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00446/2020
 ATTAAAG1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460379 MT520454
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00303/2020
 ATTAAAG1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460408 MT520483
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_460430 MT520505
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00304/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T G3892T A13768G C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_460432 MT520507
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460461 MT520536
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00295/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T C21575T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460463 MT520538
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460464 MT520539
 2020-04-01 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00271/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460638
 2020-04-01 2020-06-06
 Netherlands hCoV-19/Netherlands/Flevoland_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T C26461T C27476T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460685
 2020-04-01 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460688
 2020-04-01 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460791
 2020-04-01 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T16515C A23403G G26814T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460797
 2020-04-01 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G CTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTAT27567- C28826T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460798
 2020-04-01 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C25578T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461337
 2020-04-01 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16993C G20275A T23084C A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462218
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/LPJ-0401364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G20578T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462220
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/DRR-0401366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13318G C14408T A23403G G24794T T29729C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462222
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/LJA-0401368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17014T G23009T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462225
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/VBMJ-0401430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6507G C14408T A23403G C27999T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462226
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/VRMJ-0401372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6507G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462227
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/IMJ-0401373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462229
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/OTG-0401375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T G27240T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462230
 2020-04-01 2020-06-08
 Belgium hCoV-19/Belgium/HHC-0401376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T C28312T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462418
 2020-04-01 2020-06-08
 Singapore hCoV-19/Singapore/300/2020
 G3085T C6310A C6312A G11083T C13730T C17304T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462434 MT569470
 2020-04-01 2020-06-05
 Serbia SARS-CoV-2/human/SRB/NS838-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2910T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462472
 2020-04-01 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7382/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15324T A23403G C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463004 MT499218
 2020-04-01 2020-05-20
 Tunisia SARS-CoV-2/human/TUN/COV1663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T41C C241T C3037T G3896T C7420T A11935C C14408T C15324T G18523T C20032T C21648T A23403G T29811C A29813G T29817G T29822C A29824C TAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29826-

EPI_ISL_463745
 2020-04-01 2020-06-10
 Cyprus hCoV-19/Cyprus/005/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_463933
 2020-04-01 2020-06-11
 Canada hCoV-19/Canada/QC_AR6/2020
 C241T C1473T C3037T C14408T C15324T A23403G C25433T C27567T

EPI_ISL_464016
 2020-04-01 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0033/2020
 C241T C313T C2449T C3037T C14408T C17372T A23403G GGG28881AAC

EPI_ISL_464048
 2020-04-01 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0062/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28368A

EPI_ISL_466014
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146003804/2020
 C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC

EPI_ISL_466016
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146005604/2020
 C335T A744R G1508A G11083T C14805T T20928C C23707T G26144T A29412C

EPI_ISL_466018
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146006804/2020
 C241T C3037T C14408T A23403G C25703Y GGG28881AAC

EPI_ISL_466026
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146010404/2020
 C241T C2724T C3037T C5822T C14408T C15763T A23403G A28811T GGG28881AAC A29873R

EPI_ISL_466028
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146011404/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_466034
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146016004/2020
 C241T C3037T T11075Y C14408T A23403G GGG28881AAC G29468T T29867G

EPI_ISL_466038
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146019504/2020
 A1350T A2480G C2558T C14805T G26144T

EPI_ISL_466039
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146019804/2020
 A2480G C2558T C3688Y G4180K G11083T C11139T C14805T C16289Y C16887T G26144T C27213T G29332K

EPI_ISL_466041
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146021304/2020
 C14805T G22332R C23707T G26144T

EPI_ISL_466043
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146057204/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29555T

EPI_ISL_466047
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20146064204/2020
 A732R G1440A G2891A A6944G A29895T

EPI_ISL_466062
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20148035404/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_466065
 2020-04-01 2020-06-11
 United Kingdom hCoV-19/England/20148036404/2020
 C241T C835T C3037T C14408T G14414T G16325K C19170T G19509A G22081T A23403G G27632K GGG28881AAC

EPI_ISL_467188
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003669/2020
 C241T T661C C3037T C4423T C14408T A20268G A23403G G29734C

EPI_ISL_467189
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003663/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_467193
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003667/2020
 C8782T A15337G C25916T C26088T T28144C

EPI_ISL_467206
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003662/2020
 C10834T G11083T G26144T C26735T

EPI_ISL_467209
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003668/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_467213
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003653/2020
 C241T C2939T C3037T C9532T C14408T A20268G A23403G

EPI_ISL_467215
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003665/2020
 C241T C3037T C14408T A20268G A23403G G28027T

EPI_ISL_467218
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003670/2020
 C186T C241T C3037T C8140T T14103C C14408T A20268G A23403G

EPI_ISL_467222
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003660/2020
 C241T C3037T G5230A C6606T C11124T C14408T A20268G A23403G

EPI_ISL_467239
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003657/2020
 C8782T A23403G G29734C

EPI_ISL_467245
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003661/2020
 C8782T T12364A G17144A C18348T A19719T C26088T T28144C

EPI_ISL_467247
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003654/2020
 C913Y C4540Y C6666Y A8026W G8653K C8782T T9477W C11606Y C14805Y C16466Y A24837W G25979K T28144C C28657T C28863T

EPI_ISL_467254
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003664/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_467255
 2020-04-01 2020-06-12
 Spain hCoV-19/Spain/COV003646/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_467454
 2020-04-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C16376T A23403G

EPI_ISL_467470
 2020-04-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C16376T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_467471
 2020-04-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_467472
 2020-04-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C5672A C14408T C16376T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_467473
 2020-04-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0121/2020
 ATTA1- C241T C3037T C14408T C16376T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467474
 2020-04-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0122/2020
 ATTAAAGGT1- C241T C3037T C14408T C16376T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_467632
 2020-04-01 2020-06-14
 United States hCoV-19/USA/NM-UNM-00085/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_467633
 2020-04-01 2020-06-14
 United States hCoV-19/USA/NM-UNM-00086/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468010
 2020-04-01 2020-06-16
 Australia hCoV-19/Australia/SAP257/2020
 ATTA1- G11083T A12986G C14805T C16969T C23707T G26144T G28899T

EPI_ISL_468040
 2020-04-01 2020-06-16
 Australia hCoV-19/Australia/SAP271/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T C27128T

EPI_ISL_468453 MT628181
 2020-04-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1506/2020
 ATTAAAGGTTTATACCTT1- C241T T2824Y C3037T C4540T G4904T G5206T C14408T A15779R A23403G C24138T C25350T

EPI_ISL_468456 MT628184
 2020-04-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1509/2020
 C241T C3037T C4540T G4904T G5206T C5585S C14408T T18690C A23403G C24138T C25350T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_468498 MT628222
 2020-04-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1561/2020
 C241T C1059T C3037T C8982Y C11916T C14408T C18998T A23403G G25563T G29540A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_468529 MT628252
 2020-04-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1600/2020
 A1- C36S C241T C1059T C3037T C14408T C16260T A23403G G25563T C27509Y C28821A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_468531 MT628254
 2020-04-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1602/2020
 ATTA1- T11K C8782T C17747T A17858G C18060T T28144C T29748C

EPI_ISL_468622 MT631813
 2020-04-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1684/2020
 AT1- C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_469054
 2020-04-01 2020-06-17
 Morocco hCoV-19/Morocco/Mor-CoV-6/2020
 C241T C1059T C3037T C12970T C14408T A23403G G25563T

EPI_ISL_469179
 2020-04-01 2020-06-17
 United States hCoV-19/USA/CT-Yale-253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469181
 2020-04-01 2020-06-17
 United States hCoV-19/USA/CT-Yale-255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469183
 2020-04-01 2020-06-17
 United States hCoV-19/USA/CT-Yale-257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4234T G7312A G7331A C8619T C9994T G11150A C14408T C17470T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469184
 2020-04-01 2020-06-17
 United States hCoV-19/USA/CT-Yale-258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C16376T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469186
 2020-04-01 2020-06-17
 United States hCoV-19/USA/CT-Yale-260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T9070C T10960C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469289
 2020-04-01 2020-06-18
 Japan hCoV-19/Japan/Donner31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C313T C3037T C14408T A14650R A15124G A23403G T23584C T26966A GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469548
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12759A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469551
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1275E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T G22203T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469553
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1277D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15327T T19839C A23403G C26681T T28618C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469568
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469603
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1276A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C14408T A23403G G25563T C29546M G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469634
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C8655T C14408T A23403G C25521A C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469645
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1278FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18647Y A23403G GGG28881AAC G29414K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469681
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1278A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5497T C5826T C14408T G22583A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469771
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1277B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G G25523T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469793
 2020-04-01 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C8655T C14408T G21778T A23403G C25521A G25523T C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470843
 2020-04-01 2020-06-19
 Australia hCoV-19/Australia/WA25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T A3852T C14408T C22450T A23403G C27046T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471552
 2020-04-01 2020-06-22
 Brazil hCoV-19/Brazil/SP-549/2020
 G24C C241T C3037T A6319G C14408T A23403G G25088T T26149C GGG28881AAC GG29861TT AAAAAAAAAAAAA29891-

EPI_ISL_471957
 2020-04-01 2020-06-23
 United Kingdom hCoV-19/England/EXET-137245/2020
 G1440A G2891A C4668T T5521C C7815T A11144C A15187G C16159T

EPI_ISL_471960
 2020-04-01 2020-06-23
 United Kingdom hCoV-19/England/EXET-1372FA/2020
 C241T C3037T C14408T C18981T A20268G A23403G

EPI_ISL_474888
 2020-04-01 2020-06-23
 Spain hCoV-19/Spain/Granada-COV002990/2020
 T7375C C8782T T9477A A12316G C14805T A22151G G25979T T28144C C28657T C28863T

EPI_ISL_474962
 2020-04-01 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6656/2020
 C241T C2416T C3037T C14408T C20719T A23403G G25563T

EPI_ISL_474968
 2020-04-01 2020-06-23
 Israel hCoV-19/Israel/CVL-n-13881/2020
 C241T C2416T C3037T C7998T C14408T A23403G G25563T G25855T

EPI_ISL_475117
 2020-04-01 2020-06-23
 Sweden hCoV-19/Sweden/20-08765/2020
 C241T C1059T C3037T T10288A C14408T A23403G G24368T G25563T

EPI_ISL_475118
 2020-04-01 2020-06-23
 Sweden hCoV-19/Sweden/20-50591/2020
 C241T C3037T A10984G C14408T A23403G A26530G

EPI_ISL_475148
 2020-04-01 2020-06-23
 Sweden hCoV-19/Sweden/20-50562/2020
 C241T C1059T C3037T C14408T T23042C A23403G G24368T G25563T G25690T A28482T A28574T

EPI_ISL_475585
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC11/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_475642
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC31/2020
 C241T C379A C1059T G1821A C3037T AC5283GT A5754G G7936C G9278T C14408T G18867A G21533A C23271T A23403G G25563T

EPI_ISL_475646
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC35/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27765T

EPI_ISL_475654
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC42/2020
 C1929T C6312T C8782T C9661T G13763T C17747T A17858G C17896T C18060T C26542A T26545G C27707T C27925T T28144C

EPI_ISL_475655
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC43/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475661
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC49/2020
 C241T C1059T C3037T C13536T C14408T A23403G G25563T

EPI_ISL_475666
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC53/2020
 C241T T11443C G16005T C17934A G25563T G25681T G27467A

EPI_ISL_475669
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC56/2020
 A1079C G1397A T7225C C9319T G11083T C19862T T27384C T28688C G29742T

EPI_ISL_475670
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC57/2020
 C241T C1059T C3037T T8649C C14408T A23403G G25563T

EPI_ISL_475671
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC58/2020
 C241T C313T C3037T C4320T C14408T A23403G GGG28881AAC

EPI_ISL_475674
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC60/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475675
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC61/2020
 C241T C3037T C6541T C14408T A23403G T25430C GGG28881AAC

EPI_ISL_475676
 2020-04-01 2020-06-23
 United States hCoV-19/USA/CA-CSMC62/2020
 C241T C1059T C3037T C14408T C18582T A23403G G25563T AGTGACAACAGATGTTTCATCTCGTTGACTT27191-

EPI_ISL_475793
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C27393T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475794
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10870T T12436C C14408T C18452T A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475795
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475796
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C16466Y C21304A G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475797
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6638T C14408T T18136Y A20268G A23403G C24333T G29527K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475798
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6638Y C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475799
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475825
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C17747T C19718T C22323T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475826
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C19718T C22323T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475827
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T C26750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475923
 2020-04-01 2020-06-25
 Austria hCoV-19/Austria/CeMM0576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11345T C11412T T13258C C14408T A23403G G25526T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476792
 2020-04-01 2020-06-25
 United States hCoV-19/USA/CA-CZB-1775/2020
 T13Y C241T C3037T C6664T G12514T C14408T A23403G G28703C GGG28881AAC

EPI_ISL_476846
 2020-04-01 2020-06-26
 India hCoV-19/India/DRDE 197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C6312A T8022G T8246Y A8663R T11694Y T11696G C12885T C13730T A20630R C23929T C28311Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_478424
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6D0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478426
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6D2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1044T C3037T C14408T A23403G TA27720- GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_478427
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6D39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C C19854T G26144T CACG27879TC C27883T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_478428
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6D48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17746T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478429
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6D66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A12229G C14408T A23403G G24368T G25563T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478430
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6D75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5784T C14408T A23403G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478636
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/NORT-29545D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478637
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/NORT-29546C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A ATG1605- C1616T C20270T C24642G A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478638
 2020-04-01 2020-06-30
 United Kingdom hCoV-19/England/NORT-295675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479623
 2020-04-01 2020-06-30
 Russia hCoV-19/Russia/CRIE180117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C683T C2416T C3037T G8371T C14408T A23403G G25563T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_480010
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480029
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T G16221T A17829T A23403G A26530G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480068
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C823T C3037T C14408T G17721T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480069
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T A810G C3037T C14408T A23403G G26730A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480090
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480127
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G25879T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480130
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_480131
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480132
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T G14575A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480133
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480134
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_480177
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G4300T C14408T A23403G G25249T G25563C GGG28881AAC G29543T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480182
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480202
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C14408T A20268G A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480221
 2020-04-01 2020-07-01
 Japan hCoV-19/Japan/PG-0589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C3264G C11752T C16952T C18120T T24499C C25665T TTA27698- T28912C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480789
 2020-04-01 2020-07-02
 Senegal hCoV-19/Senegal/1966/2020
 A2274G C2306T C8782T C24370T T28144C G28878A G29742A

EPI_ISL_480806 MT703973
 2020-04-01 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0155/2020
 ATTAAAGG1- C241T C3037T C11018A C14408T A23403G G25135T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_481254
 2020-04-01 2020-07-03
 Japan hCoV-19/Japan/NGS-SC-1/2020
 A1- C241T C313T C3037T C14408T A23403G GGG28881AAC G28975T

EPI_ISL_481266 MT704120
 2020-04-01 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0017/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- -31C C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_481267 MT704121
 2020-04-01 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0019/2020
 ATTAAAGGTT1- A2480G C2558T C9170T G11083T C14805T G26144T C27741T G29868A

EPI_ISL_481268 MT704122
 2020-04-01 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0020/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25563T G29690T A29865G G29868C

EPI_ISL_481269 MT704123
 2020-04-01 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0021/2020
 C241T C619T C1059T C3037T G14277T C14408T A14912G A23403G G25563T

EPI_ISL_481270 MT704124
 2020-04-01 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0023/2020
 ATTA1- C241T C1059T C3037T C14408T C22624A A23403G G25563T

EPI_ISL_481746
 2020-04-01 2020-07-03
 Canada hCoV-19/Canada/NB_248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25217T G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_481749
 2020-04-01 2020-07-03
 Canada hCoV-19/Canada/NB_252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T G29227T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482292
 2020-04-01 2020-07-03
 United States hCoV-19/USA/OR-PROV-001/2020
 A4236G C7858T G11083T C12084T C14805T C17288T T25655C G26144T

EPI_ISL_482293
 2020-04-01 2020-07-03
 United States hCoV-19/USA/OR-PROV-002/2020
 A2480G C2558T G11083T C14805T C18714T G26144T C27012T

EPI_ISL_482301
 2020-04-01 2020-07-03
 United States hCoV-19/USA/OR-PROV-014/2020
 C241T C3037T C13665A C14408T A23403G GGG28881AAC

EPI_ISL_483177
 2020-04-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0492-SAN/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T G27870T

EPI_ISL_483183
 2020-04-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0499-SAN/2020
 C241T C1059T C3037T C14408T C16762T A23403G G25563T G29527T

EPI_ISL_483188
 2020-04-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0505-SAN/2020
 ATTA1- C241T C3037T C11020T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483197
 2020-04-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0518-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G

EPI_ISL_484806
 2020-04-01 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S001122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A5011C C8683T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485396
 2020-04-01 2020-07-09
 South Korea hCoV-19/South Korea/S5/2020
 A2345G A2480G C2558T C10604T G11083T C14805T G26144T

EPI_ISL_485871 MT739477 MT913090
 2020-04-01 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_486481 LR860594
 2020-04-01 2020-07-10
 Switzerland hCoV-19/Switzerland/110049_163_F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C673Y G1355T C3037T G10097R C10647Y C14408T C16848T T18144C A19298W C22347S A23403G C23731T A27392W C27849Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486487 LR860602
 2020-04-01 2020-07-10
 Switzerland hCoV-19/Switzerland/110057_164_C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C280T C1059T C3037T A3116G A3660C C14408T G19480K A23403G G25563T T27546Y C27600Y T27772Y G29032K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486491 LR860607
 2020-04-01 2020-07-10
 Switzerland hCoV-19/Switzerland/110061_164_E12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1710T C3037T G4006R G10642T C14408T A19440R G19539K C22347S A22472R A23403G C26111Y C27727Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486499 LR860625
 2020-04-01 2020-07-10
 Switzerland hCoV-19/Switzerland/110070_165_H5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A9641G C14408T C15324T T22516W A23403G G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486658
 2020-04-01 2020-07-10
 Italy hCoV-19/Italy/Hsacco-21/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_486827
 2020-04-01 2020-07-10
 Russia hCoV-19/Russia/CRIE175960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T A3076G C3373A C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486828
 2020-04-01 2020-07-10
 Russia hCoV-19/Russia/CRIE176675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G C28868T GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486829
 2020-04-01 2020-07-10
 Russia hCoV-19/Russia/CRIE187963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G11029A A12886G C14408T C21772T A23403G GGG28881AAC C29518T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_486913 MT742088
 2020-04-01 2020-07-10
 United States SARS-CoV-2/human/USA/MD-MDH-0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A2480G C2558T G11083T C14805T G22346T G26144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_486914 MT742089
 2020-04-01 2020-07-10
 United States SARS-CoV-2/human/USA/MD-MDH-0024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T7237C C14408T A23403G G25563T A29866G

EPI_ISL_487703
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27998T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487707
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487721
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17676T A23403G C27294T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487789
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17676T A23403G C27294T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487805
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487809
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487815
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17126C A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487934
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488516
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-295851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19300T A20268G A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488522
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283A7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C7926T C13530T T27404A A27669G C28253Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488524
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-2956EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410Y T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488561
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G T3313C C9223T G11083T C14805T T17247C A21625G T24589C T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488568
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3912T C7423T C24054T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488577
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-2838DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5581T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488583
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G T3313C C9223T G11083T C14805T T17247C G17679T A21625G G26144T C28253Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488615
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1710T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488642
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-295693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488643
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-2839BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488651
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-295684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488652
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-29597C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T25202K C28854T G29737A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488663
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13051T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488677
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-2956FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G25218T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488684
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-2838FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2219G C3037T G11521T C14408T G21123T C23185T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488691
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-29595E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488692
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-29588E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T C4683T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488693
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T C8645T C13035T C14408T C16466Y C18877T A23403G C23643T G24197T T24923C G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488705
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488708
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-2839AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K G27996T GGG28881AAC G29315T G29468C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488711
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-29594F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488721
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-29599A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C14805T T17247C A17799G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488735
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-283856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13051T C14408T G22604K A23403G T25202K GGG28881AAC G28968T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_488736
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/England/NORT-295745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22225T A23403G C29535T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488884
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T G19009T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488886
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488895
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488897
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488915
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6578T C14408T C18348T A23403G AAATTG26096- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488930
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T T19533C A23403G C28312Y C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488931
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488945
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21622T C22088T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488957
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4900A C14408T C17678T A23403G G28191T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488973
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14697T C14805T T16820C G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489010
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489027
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9565T C12400T C14408T A23403G C26499T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489030
 2020-04-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T C28310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490210
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor1/2020
 ATTAAAGGTTTATACCTTC1- C241T C379A C1059T C3037T T9596C G11893T C14408T G16707T A22481G A23403G A24922G G25563T CC29837AT GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_490211
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor2/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C379A C1059T C3037T T9596C G11893T C14408T G16707T A22481G A23403G A24922G G25563T A29827T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_490212
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor3/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C379A C1059T C3037T C14408T A23403G G25563T A29827T TGCT29829- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490213
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor4/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C379A C1059T C3037T C14408T A23403G G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840CT

EPI_ISL_490214
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor5/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C379A C1059T C3037T C14408T A23403G G25563T C29837A TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840CT

EPI_ISL_490215
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor6/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C379A C1059T C3037T C14408T A23403G G25563T C25669T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_490216
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor10/2020
 ATTAAAGGTTTATACCT1- CCAGG20- C241T C379A C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_490217
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor13/2020
 A1G TAA3CTG G7T C241T C379A C1059T C3037T C14408T A23403G G25563T T29848A A29850T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_490218
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor14/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A17344G A23403G G25563T CTCAAAAAGAGATGGCAACTAGCACT25585- T29848A ATAGCTT29850- C29857T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_490219
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor15/2020
 TTAAAGGTTTATACCTTCCCAGGT2- G2305T G11083T G11108T C14805T A15779C T17247C G23426T G26144T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_490220
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor17/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G2305T G11083T G11108T C14805T A15779C T17247C G23426T G26144T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_490221
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor18/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T G9479T C14408T A23403G TACGTGCCA27623- TAATAGCTTCTTAGGAG29848- GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_490222
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor20/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C904T CATTTGTCACGCACTCAAAGGGATTGTACAGAAAGTGTGTTAAATCCAGAGAAGAAACTGGCC2388- C3037T A11348G G11634T C14408T C20148T A23403G AGTTGTAAACATTCAAAAAGAAAT25087- GGG28881AAC CAT29838ATC TAA29848ACC A29852G T29855C TT29858CC GGA29861AAGTGCTG A29865G G29868T AAA29872GGC AA29876TG AAA29879GCC AA29883CC AAAAAAAAA29886TGCCTGGCC AAAAAA29898-

EPI_ISL_490223
 2020-04-01 2020-07-15
 United States hCoV-19/USA/NC-Q2-NPVal-Donor21/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G2305T A7024T ATGAATGGACGTACCATATTGGGTAGTGCTTTATTAGAAGATGAATTTACACCTTTTGATGTTGTTAGACAATGCTC10880- G11083T G11108T C14805T A15779C T17247C G23426T G26144T GAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29798-

EPI_ISL_491118
 2020-04-01 2020-07-16
 Czech Republic hCoV-19/Czech Republic/NRL_5752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18636T C22432T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491459
 2020-04-01 2020-07-17
 Peru hCoV-19/Peru/INS-034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13335T C13536T C14408T A23403G C23731T GGG28881AAC G29179T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491460
 2020-04-01 2020-07-17
 Peru hCoV-19/Peru/INS-035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T C6255T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491461
 2020-04-01 2020-07-17
 Peru hCoV-19/Peru/INS-038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T C5343A G10097A C11322T C13536T C14408T A23403G C23731T GGG28881AAC G29179T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491504
 2020-04-01 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491668
 2020-04-01 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T C19011T A19782G G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492068 MT775828
 2020-04-01 2020-07-19
 Poland SARS-CoV-2/human/POL/PL_P43/2020
 ATTAAA1- C241T C3037T C3587T G7936A C11572T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_492152
 2020-04-01 2020-07-20
 Australia hCoV-19/Australia/SAP387/2020
 ATTAAAGGTTTATACCTTCCCAG1- G374A C5777T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_492181 MT766907
 2020-04-01 2020-07-16
 United States SARS-CoV-2/human/USA/AR-UAMS001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A23403G G25444T G25563T A28874G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492182 MT766908
 2020-04-01 2020-07-16
 United States SARS-CoV-2/human/USA/AR-UAMS002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7513C C14408T A23403G C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492371
 2020-04-01 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18531B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29100A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492444
 2020-04-01 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18531D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4265A C8344T C14408T C17010T C22949T C23086T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493063
 2020-04-01 2020-07-20
 United States hCoV-19/USA/WY-WYPHL-20007007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T A7870G C14408T A23403G G25563T C27964T

EPI_ISL_494296
 2020-04-01 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A G16537K C17977T C25669T G28851T C29545T

EPI_ISL_494344
 2020-04-01 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168BE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A C25669T G28851T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_494364
 2020-04-01 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168D95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15237T T21722C A23403G G25459T A26592W GGG28881AAC

EPI_ISL_494400
 2020-04-01 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T G3340T C12473T C14408T C19402T A23403G G25563T C26028T C27964T

EPI_ISL_494408
 2020-04-01 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_494412
 2020-04-01 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1171/2020
 ATTAAAGGTTTATACC1- C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_494420
 2020-04-01 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_494622
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1497/2020
 C241T A873G C1059T T1211G C3037T C14408T C21575T A23403G G24985T G25563T C27964T

EPI_ISL_494623
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1498/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_494717
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1653/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G C25254T G25563T C27964T

EPI_ISL_494719
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T T1211G C3037T C14408T A23403G G25563T C27964T

EPI_ISL_494720
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1658/2020
 ATTAA1- C241T C1059T C3037T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_494725
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1664/2020
 ATTAAAGGT1- C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T

EPI_ISL_494736
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1676/2020
 ATTA1- C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T

EPI_ISL_494739
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1681/2020
 ATTAAAGGTTTATAC1- C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T

EPI_ISL_494742
 2020-04-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C7932T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_495379 MT791915
 2020-04-01 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0473/2020
 ATTA1- G3113C C9541T G11083T C14805T T17247C G21004T G25459T G26144T G29254A TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_495564
 2020-04-01 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S000959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6905G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497818
 2020-04-01 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T T25577C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498163
 2020-04-01 2020-07-27
 Colombia hCoV-19/Colombia/95319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499358
 2020-04-01 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168E74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6990T C14408T A23403G C29200T

EPI_ISL_499374
 2020-04-01 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168F80/2020
 ATTAAAGGT1- G1820A A2480G C2558T T8599C G11083T C14805T G16236T G26144T C28344T

EPI_ISL_499429
 2020-04-01 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16930B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3264T C6990T C14408T A23403G C29200T

EPI_ISL_499442
 2020-04-01 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169426/2020
 ATTAAAGGTTT1- C241T C3037T C6990T C14408T A23403G C29200T AAA29901-

EPI_ISL_499447
 2020-04-01 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1694AE/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_500832 MT911797
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0574/2020
 ATTA1- A1515G C9223T G11083T C14805T T17247C A17799G C20825T G26144T C27688T G29562A

EPI_ISL_501191
 2020-04-01 2020-07-31
 Malaysia hCoV-19/Malaysia/2101/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C6312A T7621C G11083T C13730T C23929T C25549T C28311T

EPI_ISL_501210
 2020-04-01 2020-07-31
 Malaysia hCoV-19/Malaysia/3998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C21736T C23929T G26365T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_506987
 2020-04-01 2020-08-02
 South Korea hCoV-19/Korea/KCDC2193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G5572T C10038T G11083T C14805T G26144T G27441T G28580T

EPI_ISL_507017 MT820468
 2020-04-01 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC11/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C18877T A23403G C26735T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_507029 MT820487
 2020-04-01 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC67/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T A11869G C14408T A23403G T27484C GGG28881AAC G29422T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_507135
 2020-04-01 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D1BF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507609
 2020-04-01 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C11109Y C14408T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_507612
 2020-04-01 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T1237C C1380T C3037T C14408T A23403G G25563T C28291T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_507619
 2020-04-01 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C11103T C14408T A23403G T25129A G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_507913
 2020-04-01 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T G11108A C14408T A23403G G25563T C25976A G27396T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_508961
 2020-04-01 2020-08-04
 France hCoV-19/France/ARA1783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C241T G3014A C3037T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508962
 2020-04-01 2020-08-04
 France hCoV-19/France/ARA1811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTG1- C241T C1059T C3037T C14408T A23403G G25563T G28195T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508963
 2020-04-01 2020-08-04
 France hCoV-19/France/ARA18212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T GTACGATCGAGT29747- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508976
 2020-04-01 2020-08-04
 France hCoV-19/France/ARA19119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1059T C3037T G3320A C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509015
 2020-04-01 2020-08-04
 France hCoV-19/France/ARA18066/2020
 ATTAAAGG1- C241T C337T C3037T C9430T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509016
 2020-04-01 2020-08-04
 France hCoV-19/France/ARA18148/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C9442T C14408T A23403G G25563T G28325A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_511028
 2020-04-01 2020-08-07
 Portugal hCoV-19/Portugal/PT0769a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T G17964T A23403G A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511676
 2020-04-01 2020-08-08
 Portugal hCoV-19/Portugal/PT1129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T C21575T A23403G A26459C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511689
 2020-04-01 2020-08-08
 Portugal hCoV-19/Portugal/PT1142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6539T C14408T A23403G G25305T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512395
 2020-04-01 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D14CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512400
 2020-04-01 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D1534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A1717G A2480G C2558T G11083T C14805T G26144T C26340T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512929
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH482/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512930
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH483/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512989
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH720/2020
 C8782T C21549T G22468T G27281T T28144C G29742A

EPI_ISL_512993
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH743/2020
 C241T C3037T C14408T C16915T C18877T A23403G T24202C G25563T

EPI_ISL_512994
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH746/2020
 C8782T G22468T T28144C G28878A G29742A

EPI_ISL_512995
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH747/2020
 C241T C14408T T27484C GGG28881AAC

EPI_ISL_512996
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH748/2020
 C241T C3037T C14408T C18877T A19779G A23403G G25563T C26735T

EPI_ISL_512997
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH754/2020
 C241T C3037T C8782T C14408T C18877T C29627T

EPI_ISL_512998
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH755/2020
 C241T C3037T C11224T C14408T A20268G A23403G C28854T

EPI_ISL_512999
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH756/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_513000
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH757/2020
 C241T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513001
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH759/2020
 C241T C3037T C14408T C18877T C19170A A23403G G25563T C26735T

EPI_ISL_513121
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH273/2020
 C241T C3037T C14408T C18687T C18877T A23403G G25563T C26735T

EPI_ISL_513122
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH274/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513123
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH276/2020
 C241T C3037T C14189T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513124
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH280/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513125
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH281/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C29750T

EPI_ISL_513126
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH282/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513182
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH704/2020
 C241T G4201T C14408T A23403G G25563T C26735T C28708T

EPI_ISL_513183
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH710/2020
 C241T C3037T C14408T G25563T C26735T

EPI_ISL_513184
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH711/2020
 C241T C3037T C14408T A23403G G25563T C26735T

EPI_ISL_513185
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH712/2020
 C241T C3037T C14408T A23403G G25563T C26735T

EPI_ISL_513186
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH713/2020
 C241T C3037T C14408T G25563T C26735T

EPI_ISL_513187
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH715/2020
 C241T C3037T C8782T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513188
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH716/2020
 C241T C3037T C14189T C14408T C18877T G25563T C26735T

EPI_ISL_513189
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH717/2020
 C241T C3037T C14408T C25945A GGG28881AAC

EPI_ISL_513233
 2020-04-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH741/2020
 C241T C3037T C14408T A23403G G25563T C26735T

EPI_ISL_515275
 2020-04-01 2020-08-18
 United States hCoV-19/USA/WA-UW-4589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGT1- C241T C1059T C3037T C14408T C16859T A23403G G25563T G27281T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_515345
 2020-04-01 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0064/2020
 ATTA1- C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_515524
 2020-04-01 2020-08-19
 Brazil hCoV-19/Brazil/SP-125/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC GGAG29861- AATG29865CTCT A29872T AAAAAAAAA29895-

EPI_ISL_515543
 2020-04-01 2020-08-19
 Brazil hCoV-19/Brazil/SP-137/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G7675T C14408T A23403G T27299C GGG28881AAC T29148C GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_517713
 2020-04-01 2020-08-24
 Peru hCoV-19/Peru/INS-057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A22330T A23403G C23731T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_522657 MT973301
 2020-04-01 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2848R C3634T C8782T C17747T A17858G C18060T T28144C AC29761- ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_523945
 2020-04-01 2020-08-27
 Germany hCoV-19/Germany/NW-74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524473
 2020-04-01 2020-08-28
 Peru hCoV-19/Peru/LIM-INS-060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T T19839C G22895T A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_525644
 2020-04-01 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-34728-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1714T C3037T C14408T A23403G T25502A G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525656
 2020-04-01 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-39698-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526470
 2020-04-01 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB2889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526827
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0610/2020
 ATTAAAGGTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_526828
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0612/2020
 A1- C241T C1059T C3037T A3192G C11916T C14408T C18199T C18998T A23403G G25563T G25947C T28074C G28881T G29540A

EPI_ISL_526829
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0613/2020
 ATTAAAGGTTTATACCT1- A38R T490A C3177T G5554T C6040T C8782T G12478A T18736C A23370G C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_526830
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0614/2020
 C241T C1059T C3037T G12373T C14408T G17590A A23403G G25563T C26625T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_526831
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T G410T C1059T C3037T C9198T C14408T A23403G G25563T C28603T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_526832
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C504A C1059T C3037T C4246T C14408T A23403G G25563T G29745T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_526834
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C1917T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_526835
 2020-04-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0622/2020
 ATTAAAGGTTT1- C241T C1059T G1944A C3037T A12026T C14408T A23403G G25563T C28391T C29722T C29774T

EPI_ISL_528990
 2020-04-01 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE10002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C37M C241T C3037T A6866W A6869W C14408T A23403G G23771T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529009
 2020-04-01 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE9047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T A6866W A6869W C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_530053
 2020-04-01 2020-09-10
 Spain hCoV-19/Spain/MD-LP50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16448G A20268G A23403G C26270T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530220 MT997742
 2020-04-01 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T T25773C C27673T C28957T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_530227
 2020-04-01 2020-09-11
 Australia hCoV-19/Australia/QLD979/2020/P1
 A1- C241T C3037T C14408T A20268G A23403G G25483A

EPI_ISL_530228
 2020-04-01 2020-09-11
 Australia hCoV-19/Australia/QLD968/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_530229
 2020-04-01 2020-09-11
 Australia hCoV-19/Australia/QLD978/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- ATG1605- C1912T

EPI_ISL_530230
 2020-04-01 2020-09-11
 Australia hCoV-19/Australia/QLD970/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_534346
 2020-04-01 2020-09-14
 Russia hCoV-19/Russia/CRIE181019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_534841
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B31BE/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_534852
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3330/2020
 C241T C3037T G7229A A10948G C14408T A23403G GGG28881AAC A29889M A29892R AAAAAAAA29896-

EPI_ISL_534883
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- A2480G C2558T G11083T C14805T G26144T C28005T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_534884
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3734/2020
 ATTAAAGGTTTAT1- C241T ATG518- C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_534904
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3B83/2020
 C241T C3037T C14408T A23403G G27238T G28077T AAAAAAAA29896-

EPI_ISL_534918
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3F2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- A1515G C9223T C10277T G11083T C14805T T17247C G25906T G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_534924
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B401A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C1314T C3037T C14408T C15579T G22592T A23403G GGG28881AAC A29430G AAAAAAAAAAAAAAAAA29887-

EPI_ISL_534955
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B443C/2020
 C241T C3037T C14408T A23403G

EPI_ISL_535001
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4C34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G G24038T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535010
 2020-04-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4D40/2020
 ATTAAAGGTTTATACCTTCCC1- A2480G C2558T G11083T C14657T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_536523
 2020-04-01 2020-09-16
 Peru hCoV-19/Peru/LAM-INS-125/2020
 ATTA1- C241T C2536T C3037T C4002T C10030A G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179T

EPI_ISL_536524
 2020-04-01 2020-09-16
 Peru hCoV-19/Peru/LAM-INS-126/2020
 ATTAAAG1- C241T C3037T C4002T G10097A C13335T C13536T C14408T A23403G C23731T GGG28881AAC G29179T C29870M

EPI_ISL_536528
 2020-04-01 2020-09-16
 Peru hCoV-19/Peru/JUN-INS-131/2020
 ATTAAAG1- C50T C241T C335T C3037T C14408T C18877T T19839C T22965C A23403G G25563T

EPI_ISL_536562
 2020-04-01 2020-09-16
 Peru hCoV-19/Peru/LAM-INS-169/2020
 ATTAAAG1- C241T C3037T C4002T C6255T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_537592
 2020-04-01 2020-09-16
 United States hCoV-19/USA/CA-UCLA-67/2020
 A1- C241T C3037T G7393T C14408T C18877T T22426C A23403G G25563T AA29902-

EPI_ISL_537593
 2020-04-01 2020-09-16
 United States hCoV-19/USA/CA-UCLA-68/2020
 ATTAAAGG1- C2676T C8782T C21575T A22606T G23755T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_538340
 2020-04-01 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538341
 2020-04-01 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C16260T A23403G G25563T C26645Y C28821A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538342
 2020-04-01 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A16395G A23403G G23593T G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538343
 2020-04-01 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T G20679R A23403G G23593T G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538467
 2020-04-01 2020-09-17
 Singapore hCoV-19/Singapore/217nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1913T C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538468
 2020-04-01 2020-09-17
 Singapore hCoV-19/Singapore/935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1998A C6310A C6312A G11083T C13730T C17883T C19524T C23929T C28311T C29642T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538791
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G2100T A8833G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538832
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA4BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T844Y C3037T C3373A C14408T C14688T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538979
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA6F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5284T C6027T A10236G G11083T C14805T T17247C G22319A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538983
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA6E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C850T C1884T C2416T C3037T C14408T A23403G C25508T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538986
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A832D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C2416T C3037T C14408T A23403G C25508T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538988
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A830F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538989
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A82D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538990
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A828A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17104T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539068
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8C7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539069
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A82A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1609Y C3037T G11230T C14408T G21724T C22326T A23403G G23587C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539090
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8C5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T C29608T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539137
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21807A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539171
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539203
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A84C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539219
 2020-04-01 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A874F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21807A A23403G C25156T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539306
 2020-04-01 2020-09-17
 Netherlands hCoV-19/env/Netherlands/UT-92848-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1997T C3037T C14408T A23403G T23622C CACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29546-

EPI_ISL_539308
 2020-04-01 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92852-N1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_539309
 2020-04-01 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92852-N2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1944T C3037T C14408T C16017T A23403G ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_539317
 2020-04-01 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92851-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A23403G G25489T GGG28881AAC GATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29474-

EPI_ISL_539318
 2020-04-01 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NH-92851-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T T514C C1059T C3037T G8322T C10929T A23403G G25489T G26803T ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_539319
 2020-04-01 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NB-92853-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A23403G ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_539320
 2020-04-01 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NB-92853-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTG1- T514C C8266T C13536T C26444T C29520T ACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29547-

EPI_ISL_539777
 2020-04-01 2020-09-19
 Czech Republic hCoV-19/Czech Republic/NRL-5751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C2488T C3037T G11083K C14408T T17865C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542571
 2020-04-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9163T C10319T C14408T C16995T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542573
 2020-04-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542582
 2020-04-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11224T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542599
 2020-04-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542692
 2020-04-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18055A G19525T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544456
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544465
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544471
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544479
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545240
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11001T C14408T A23403G G25563T G28326T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545867
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545882
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A18082G A23403G G25563T C27964T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546738
 2020-04-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C7124T C8782T C9561T T18736C C24034T C25433T T26729C C26895T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547494
 2020-04-01 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G25769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547505
 2020-04-01 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23248T A23403G C27046T GGG28881AAC T29128C G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547534
 2020-04-01 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548364
 2020-04-01 2020-09-26
 United States hCoV-19/USA/CA-CZB-3646/2020
 ATTA1- C241T G443A C3037T C14408T A23403G C28253Y GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_549016
 2020-04-01 2020-09-28
 Netherlands hCoV-19/env/Netherlands/NH-92852-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T104C A23403G GGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29473-

EPI_ISL_549021
 2020-04-01 2020-09-28
 Netherlands hCoV-19/env/Netherlands/UT-92849-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGC1- A23403G ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_560743
 2020-04-01 2020-09-29
 United States hCoV-19/USA/MN-MDH-1656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T T19527C A23403G G25563T C27964T C28099T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_560744
 2020-04-01 2020-09-29
 United States hCoV-19/USA/MN-MDH-1657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560745
 2020-04-01 2020-09-29
 United States hCoV-19/USA/MN-MDH-1658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_569463
 2020-04-01 2020-10-02
 France hCoV-19/France/IHU-0337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T T6082C A10323G C14408T A23403G G25563T CTT27434- AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

MT380730
 2020-04-01 2020-04-24
 United States SARS-CoV-2/human/USA/VI-CDC-1993/2020
 C241T G2813K C3037T C14408T G16181K G18325T A23403G GGG28881AAC A28911R AAAAAAAAAAAAAAAAAAAAA29883-

MT627924
 2020-04-01 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S587/2020
 ATTAAAGGTTTAT1- G237T C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT671828
 2020-04-01 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1775/2020
 T13Y C241T C3037T C6664T G12514T C14408T A23403G G28703C GGG28881AAC

MT706216
 2020-04-01 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C829T G6454T C8782T G16381A C16428T T17877C C20316T G25500T C26124T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706247
 2020-04-01 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3811T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT731764
 2020-04-01 2020-07-08
 Morocco SARS-CoV-2/human/MAR/RMPS06/2020
 C241T C1059T C3037T C12970T C14408T A23403G G25563T

MT733120
 2020-04-01 2020-07-08
 Morocco SARS-CoV-2/human/Morocc0/RMPS6/2020
 C241T C1059T C3037T C12970T C14408T A23403G G25563T

MT810506
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1497-CS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A873G C1059T T1211G C3037T C14408T C21575T A23403G G24985T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810507
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1498-CS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810522
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1653-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G C25254T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810524
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1657-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810525
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1658-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810530
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1664-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810541
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1676-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810544
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1681-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810547
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1684-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C7932T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810627
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1157-CS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G3340T C12473T C14408T C19402T A23403G G25563T C26028T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810635
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1166-CS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810639
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1171-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810647
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1184-CS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810998
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0382-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811201
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0499-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T G29527T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811206
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0505-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C11020T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811214
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0518-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T A26433G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811698
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0268-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1191T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811700
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0270-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C18115T C21254T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811702
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0272-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811703
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0273-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C13119T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811708
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0278-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G6362A C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811710
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0280-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10188T C14408T A23403G T24982C G25563T C25886T C27509T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811712
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0282-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811714
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0284-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T G21898A A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811715
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0285-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T G22708T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811720
 2020-04-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0290-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T G2900A C3037T C10319T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873104
 2020-04-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00017/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873105
 2020-04-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00020/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873123
 2020-04-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00018/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873218
 2020-04-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00019/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873413
 2020-04-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00016/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T

MT877300
 2020-04-01 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT877302
 2020-04-01 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT877304
 2020-04-01 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4234T G7312A G7331A C8619T C9994T G11150A C14408T C17470T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT877305
 2020-04-01 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C16376T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT877306
 2020-04-01 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T9070C T10960C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW023935
 2020-04-01 2020-09-21
 Peru SARS-CoV-2/human/PER/cov001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C442T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030193
 2020-04-01 2020-09-22
 Peru SARS-CoV-2/human/PER/covper049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C2536T C3037T C4002T C10030A G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030194
 2020-04-01 2020-09-22
 Peru SARS-CoV-2/human/PER/covper050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C13335T C13536T C14408T A23403G C23731T GGG28881AAC G29179T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030198
 2020-04-01 2020-09-22
 Peru SARS-CoV-2/human/PER/covper055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C335T C3037T C14408T C18877T T19839C T22965C A23403G G25563T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030229
 2020-04-01 2020-09-22
 Peru SARS-CoV-2/human/PER/covper093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T C6255T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW047085
 2020-04-01 2020-09-13
 United States SARS-CoV-2/human/USA/UF-6/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T C17172T T18168C A23403G G25563T GAATGATT27754-

MW047309
 2020-04-01 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000505/2020
 C241T C1059T C3037T T10213C C10319T C14408T T17137C A23403G G25563T C27964T

MW047310
 2020-04-01 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000506/2020
 T168C C241T C3037T C14408T A23403G C24797T

MW047311
 2020-04-01 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000507/2020
 C241T C1059T C3037T C14408T A23403G G25563T

MW047312
 2020-04-01 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000508/2020
 T490A C3177T C6040T C6843T C8782T C8950T G12478A T18736C C24034T T26729C C26801T G28077C T28144C C28896G C29451T A29700G

MW047313
 2020-04-01 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000509/2020
 C241T C1059T C3037T C14408T A18082G A23403G G25563T A27357G C27964T

MW047314
 2020-04-01 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000510/2020
 T168C C241T C3037T C14408T A23403G C24797T

MW047318
 2020-04-01 2020-09-29
 United States SARS-CoV-2/human/USA/WRCEVA_000516/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T C28531T

NMDC60013230
 2020-04-01 2020-06-01
 China hCoV-19/Guangzhou/ID113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15752T A21315T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_420293 MT365033
 2020-04-02 2020-04-20
 United States SARS-CoV-2/tiger/NY/040420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_422459
 2020-04-02 2020-04-10
 United States hCoV-19/USA/WI-GMF-00557/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_422616 LR878057
 2020-04-02 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422621 LR878068
 2020-04-02 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T C14408T A16179G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422623 LR878071
 2020-04-02 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2094T C3037T C14408T C20148T A23403G C27213T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422625 LR878067
 2020-04-02 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_422626 LR878070
 2020-04-02 2020-04-11
 Netherlands hCoV-19/Netherlands/NA_317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_423591
 2020-04-02 2020-04-12
 United Kingdom hCoV-19/England/20148043704/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425142
 2020-04-02 2020-04-14
 United States hCoV-19/USA/WI-UW-85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425143
 2020-04-02 2020-04-14
 United States hCoV-19/USA/WI-UW-86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425144
 2020-04-02 2020-04-14
 United States hCoV-19/USA/WI-UW-87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7945T CC14407TT A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425156
 2020-04-02 2020-04-14
 United States hCoV-19/USA/WI-UW-99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426471 MT350253
 2020-04-02 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0064/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G24755T G25563T

EPI_ISL_426568
 2020-04-02 2020-04-17
 United States hCoV-19/USA/AZ-TG273316/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T C26985T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426569
 2020-04-02 2020-04-17
 United States hCoV-19/USA/AZ-TG273318/2020
 C241T C3037T C9534A C14408T C18877T A23403G G25563T G29742A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426889 MT517426
 2020-04-02 2020-04-17
 Czech Republic SARS-CoV-2/human/CZE/IAB_14/2020
 ATTAAAGGTTT1- G160A C241T C3037T C14408T C22432T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_427085 MT641708
 2020-04-02 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC812/2020
 G1397A C1909T G11083T C19170T T28688C C29037T G29374A G29742T

EPI_ISL_427314
 2020-04-02 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4546V/2020
 C241T C3037T C14184T C14408T A20268G A23403G G28089A

EPI_ISL_427619
 2020-04-02 2020-04-19
 United States hCoV-19/USA/AK-PHL092/2020
 ATTAAAGGTTTATA1- C241T T1978A C3037T C6504T C12781T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_428729
 2020-04-02 2020-04-21
 United States hCoV-19/USA/WI-UW-255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T A12110G G16381A T17877C C20316T G25500T C26192T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428851
 2020-04-02 2020-04-22
 Russia hCoV-19/Russia/Moscow-25I/2020
 C241T C3037T C3373A C14408T A23403G GGG28881AAC

EPI_ISL_428852
 2020-04-02 2020-04-22
 Russia hCoV-19/Russia/Moscow-35I/2020
 C241T C3037T C10969T C14408T A23403G GGG28881AAC

EPI_ISL_428960
 2020-04-02 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS6326231/2020
 C241T C3037T G4255T C13517T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429128
 2020-04-02 2020-04-23
 Sweden hCoV-19/Sweden/20-08680/2020
 C207T C241T C1059T C3037T TGAAAATT3670- A23403G G24368T G25563T

EPI_ISL_429135
 2020-04-02 2020-04-23
 Sweden hCoV-19/Sweden/20-08719/2020
 C241T C3037T C8140T C14408T A20268G A23403G

EPI_ISL_429218
 2020-04-02 2020-04-23
 Switzerland hCoV-19/Switzerland/GE0304/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G C26340T C28854T

EPI_ISL_429649 MT375476
 2020-04-02 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-5144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATA1- G1148T C8782T C17326T C17747T A17858G A17884G C18060T G19645T T28144C G29747T -29904AAAAAAAAAAAA

EPI_ISL_429650 MT375477
 2020-04-02 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-5152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAA1- C8782T C17326T C17747T A17858G A17884G C18060T G19645T T28144C C29762T -29904AAAAA

EPI_ISL_429651 MT375478
 2020-04-02 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-5158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34HTT C241T C1059T C3037T C14408T A23403G G25563T G29553A A29903-

EPI_ISL_429653 MT375480
 2020-04-02 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-5166/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TH C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_429654 MT375481
 2020-04-02 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-5169/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T C27630T G29553A -29904AA

EPI_ISL_429655 MT375482
 2020-04-02 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-5170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C36T C241T C1059T C3037T C14408T C16375T A23403G G25563T G29553A -29904AAAA

EPI_ISL_429656 MT375483
 2020-04-02 2020-04-23
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-5172/2020
 ATTAAAG1- C36T C241T C1059T C3037T C14408T G20134T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_429984 MT415907
 2020-04-02 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0087/2020
 ATT1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T C29870M

EPI_ISL_429985 MT415908
 2020-04-02 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0088/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_429986 MT415909
 2020-04-02 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C274A C2416T C3037T G4523A C10712T C14408T A23403G G25563T C29409T

EPI_ISL_429987 MT415910
 2020-04-02 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0090/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T C29870A

EPI_ISL_429988 MT415911
 2020-04-02 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0091/2020
 ATTAAAGGTT1- C241T C3037T C6070T C14408T C18877T A23403G C24023T G25563T C25603T

EPI_ISL_430350
 2020-04-02 2020-04-26
 United States hCoV-19/USA/NY-NYUMC323/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27549T

EPI_ISL_430355
 2020-04-02 2020-04-26
 United States hCoV-19/USA/NY-NYUMC328/2020
 C241T C1059T C3037T C14408T A23403G C24133T G25563T

EPI_ISL_430356
 2020-04-02 2020-04-26
 United States hCoV-19/USA/NJ-NYUMC329/2020
 C241T C1059T C3037T C14408T T23032C A23403G G25563T C26464T

EPI_ISL_430807
 2020-04-02 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T A23403G C24130T A25454G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_430858
 2020-04-02 2020-04-28
 Sweden hCoV-19/Sweden/20-08714/2020
 C241T C1059T C1302T C3037T T6853C T8647C C14408T A23403G G25563T

EPI_ISL_430859
 2020-04-02 2020-04-28
 Sweden hCoV-19/Sweden/20-08717/2020
 C241T C1059T T1711A C3037T C14408T C19610T A23403G G24368T G24781T G25563T T27348C

EPI_ISL_430871 MT412227
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5181/2020
 ATTAAAGGTTTA1- AACC34HTTH C241T C1059T C3037T C14408T A23403G G25563T C29724T

EPI_ISL_430872 MT412228
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5182/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C1385T C4320T C8782T C17747T A17858G C18060T C23673T C24382T T28144C -29904AAAAAAA

EPI_ISL_430897 MT412254
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-5199/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T C18129T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430898 MT412255
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5200/2020
 ATTAAAGGTTTATACCTTCCCA1- A31T AAC34TTT C241T C1059T C1437T C3037T C6040T C11036T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_430900 MT412257
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C4320T C8782T C17747T A17858G C18060T C23673T C24382T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430959 MT412316
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6243/2020
 ATTAAAGGTTTA1- A31T C36T C241T C313T C3037T C3096T C14408T A23403G GGG28881AAC CAGTG29762- -29904AAAAAAAAAAAAAAAA

EPI_ISL_430964 MT412321
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6302/2020
 AT1- C36T C241T C527T C1059T C3037T C6548T A11595G C14408T A23403G G24348T G25563T G29553A AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_430967 MT412324
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T C36T C241T C1059T C3037T C5240G C14408T A23403G G25563T C26625T -29865AAAAAAA TG29867AA C29870A

EPI_ISL_430971 MT412328
 2020-04-02 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-6362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- CC32TT C36T C241T C1059T C3037T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_432209
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-27A41/2020
 G1440A G2891A C18312T T25051C G28851T

EPI_ISL_432622
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/SHEF-D1053/2020
 C241T C3037T C14408T G22427A A23403G G27441T GGG28881AAC

EPI_ISL_432630
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/SHEF-D1536/2020
 T4922C G11083T C14805T G26144T

EPI_ISL_432993
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F343/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432998
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F3CB/2020
 C241T C3037T C14408T A23403G C26681T GGG28881AAC

EPI_ISL_433000
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F3E9/2020
 C2558T G11083T A13922T C14805T T19731C G26144T

EPI_ISL_433002
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F413/2020
 A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_433012
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F4F5/2020
 C241T C3037T C14408T T15351G T19449C G21518T A23403G G23867A

EPI_ISL_433016
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F53E/2020
 C241T C3037T A8072G C14408T A23403G GGG28881AAC

EPI_ISL_433204
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB582/2020
 C7423T

EPI_ISL_433205
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB587/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_433206
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB588/2020
 C241T C3037T C11878T C14408T C16289T G16741T C17375T C18508T A23403G G25429T

EPI_ISL_433215
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB612/2020
 C241T C3037T C14408T G15439A A23403G G25429T G25687T C28737T

EPI_ISL_433228
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB721/2020
 C2091T G7393T A10323G G11083T C14805T T17247C G26144T

EPI_ISL_433229
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB726/2020
 C241T C3037T C14408T C21549T A23403G GGG28881AAC

EPI_ISL_433233
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB734/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433234
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB735/2020
 C512T A1900G G11083T C14805T T17247C G26144T

EPI_ISL_433237
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB764/2020
 C241T C3037T C14408T A23403G C25433T C27577T

EPI_ISL_433581
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C15613T C28854T G29315T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433587
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1438/2020
 C241T C3037T C14408T G17278T A23403G G25429T

EPI_ISL_433598
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433675
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73BF8/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433676
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73C04/2020
 A2480G C2558T G11083T C14805T C15194T A22300C G26144T C27406T

EPI_ISL_433677
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73C13/2020
 C241T C3037T C14408T C19328T A23403G C25350T

EPI_ISL_433678
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73C31/2020
 C241T C3037T C3373A C3923A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_433679
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73C40/2020
 C241T C3037T C14408T C19328T A23403G C25350T

EPI_ISL_433680
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73C5F/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433681
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73C7D/2020
 C241T C3037T C10755T C14408T A23403G GGG28881AAC

EPI_ISL_433682
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73C9B/2020
 C241T C3037T C14408T A23403G C25521T G28514T

EPI_ISL_433683
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73CAA/2020
 C241T C3037T C14408T A23403G G28514T

EPI_ISL_433685
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73CD7/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433686
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73D01/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_433695
 2020-04-02 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73D98/2020
 C241T T1294C C3037T C14408T ATT22194- A23403G A23779G C26527T GGG28881AAC -29686C

EPI_ISL_434066 MT632977
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S306/2020
 C8782T T11320C C17747T A17858G C18060T T28144C

EPI_ISL_434068 MT632930
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S308/2020
 G1401A T7818C C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434073 MT633029
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S313/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434075 MT632961
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S315/2020
 G1401A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434083 MT632882
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S323/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434090 MT633008
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S330/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434091 MT632828
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S331/2020
 A6693G C8782T T9127C C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_434092 MT632789
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S332/2020
 C241T C379A C1059T T2244C C3037T T3766C G10753T C14408T C20759T A23403G G25563T C27509T

EPI_ISL_434095 MT633017
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S335/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434098 MT632794
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S338/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T C25889T C29253T

EPI_ISL_434099 MT632771
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S339/2020
 C241T C1059T C3037T A3421G G3955T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434102 MT632966
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S342/2020
 C8782T C17747T A17858G C18060T G28001T T28144C

EPI_ISL_434103 MT632776
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S343/2020
 T490A C3177T A3398G C8683T C8782T T18736C C24034T T26729C C27635T G28077C T28144C A29700G

EPI_ISL_434104 MT632827
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S344/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434109 MT632817
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S349/2020
 G127T C8782T T10881C C17747T A17858G C18060T A27317G C28093T T28144C

EPI_ISL_434110 MT632784
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S350/2020
 C241T C527T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T C29253T

EPI_ISL_434199 MT632790
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S439/2020
 C5730T A6693G C8782T C14877T C17747T A17858G C18060T A22356G T28144C C28519T A29188T

EPI_ISL_434217 MT632853
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S457/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434222 MT632796
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S462/2020
 C241T C1059T C3037T C5869T G7560A C14408T C18252T G19999T G21452T A23403G G25563T

EPI_ISL_434227 MT632887
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S467/2020
 C8782T G15769A C17747T A17858G C18060T C25886T T28144C

EPI_ISL_434244 MT632766
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S484/2020
 C5301T T6178C A6693G C8782T C14877T C17747T A17858G C18060T C18652T T28144C C28519T A29188T

EPI_ISL_434249 MT632894
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S489/2020
 C8782T G12268A A13712G C17747T A17858G C18060T T28144C

EPI_ISL_434251 MT632788
 2020-04-02 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S491/2020
 C5730T A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T G29616A

EPI_ISL_434369
 2020-04-02 2020-04-29
 Belgium hCoV-19/Belgium/ITM_C262/2020
 C241T C3037T C14408T A23356T C23393T A23403G

EPI_ISL_434942
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH348/2020
 C241T C1059T C3037T C4931A C14408T C23191T A23403G G25563T

EPI_ISL_435010
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH427/2020
 C302T T490A C3177T C6040T C8782T C8950T G12478A T18736C C21575T C21627T C24034T T26729C T27428C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435011
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH428/2020
 C302T T490A C3177T C6040T C8782T C8950T G12478A T18736C C21627T C24034T T26729C T27428C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435012
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH429/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_435014
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH431/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C G20005A C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435015
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH432/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C G20005A C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435016
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH433/2020
 C241T C1059T C3037T C14408T C15720T A23403G G25563T

EPI_ISL_435017
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH434/2020
 C241T C3037T C14408T A17817G A23403G

EPI_ISL_435018
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH435/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435019
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH436/2020
 C241T C1059T C3037T C10188T C11962T C14408T A23403G C24642T T24982C G25563T C27964T

EPI_ISL_435020
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH437/2020
 C241T C3037T C14408T A23403G C28045T

EPI_ISL_435021
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH438/2020
 C241T C1059T C3037T C3784T C14408T A23403G G25563T

EPI_ISL_435022
 2020-04-02 2020-05-01
 United States hCoV-19/USA/TX-HMH439/2020
 C241T C1059T T2153C C3037T C10319T C14408T G18105T A23403G G25522A G25563T C27964T

EPI_ISL_435418
 2020-04-02 2020-05-04
 Hungary hCoV-19/Hungary/SRC-01136/2020
 C241T C3037T A11736G C14408T A20268G A21137G A23403G

EPI_ISL_435456
 2020-04-02 2020-05-05
 United States hCoV-19/USA/LA-SR0153/2020
 C241T C1059T C3037T C14408T A23403G C25006T G25563T

EPI_ISL_435458
 2020-04-02 2020-05-05
 United States hCoV-19/USA/LA-SR0155/2020
 C241T C1059T C3037T C10319T C14408T A23403G CGATAC25493- G25563T T27322G C27964T

EPI_ISL_435459
 2020-04-02 2020-05-05
 United States hCoV-19/USA/LA-SR0156/2020
 C241T C1059T T2845C C3037T G3871T C14408T G17278T A23403G G25563T C27964T

EPI_ISL_435460
 2020-04-02 2020-05-05
 United States hCoV-19/USA/LA-SR0157/2020
 C241T C1059T C3037T C10319T C14408T G15372T A23403G G25563T C27964T

EPI_ISL_435462
 2020-04-02 2020-05-05
 United States hCoV-19/USA/LA-SR0159/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_436099
 2020-04-02 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-24/2020
 C241T C3037T C14408T C14585T T23272C A23403G

EPI_ISL_436108
 2020-04-02 2020-05-06
 Taiwan hCoV-19/Taiwan/TSGH-23/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_436571 MT706385
 2020-04-02 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7929G C9195T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436635 MT706447
 2020-04-02 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A21137G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436962
 2020-04-02 2020-05-08
 Denmark hCoV-19/Denmark/ALAB-SSI-1126/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29769T

EPI_ISL_437201
 2020-04-02 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG5/2020
 C241T C14408T A23403G

EPI_ISL_437239
 2020-04-02 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0040/2020
 C241T C3037T C14408T G19825T A23403G G25395T GGG28881AAC

EPI_ISL_437283
 2020-04-02 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0089/2020
 C241T C3037T G11083T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_437364
 2020-04-02 2020-05-08
 United States hCoV-19/USA/MN-MDH-336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T G14350T C17747T A17858G C18060T A24694T T28144C G28812T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_437576
 2020-04-02 2020-05-11
 United States hCoV-19/USA/CA-SR0224/2020
 G1401A A5405G G8131T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_437631
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1065/2020
 C241T C1059T C1302T C3037T C6330T C14408T C15120A A23403G G23624T G25563T C28253T

EPI_ISL_437632
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1086/2020
 C241T C3037T C7834T C14408T C22096T A23403G

EPI_ISL_437637
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1230/2020
 C241T C1059T C1302T C2062T C3037T C8956T C14408T A23403G G25563T

EPI_ISL_437639
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1280/2020
 C241T C1059T C3037T C6539T C14408T A23403G G25563T

EPI_ISL_437643
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1334/2020
 C241T C1059T C1869T C3037T C14408T A23403G G25563T

EPI_ISL_437644
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1337/2020
 C241T G252T C1059T C3037T T10692C C14408T C15720T A23403G G25563T

EPI_ISL_437645
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1348/2020
 C241T C1059T C3037T C9803T C14408T A23403G G25563T

EPI_ISL_437646
 2020-04-02 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1351/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T G28812T

EPI_ISL_437761
 2020-04-02 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah90/2020
 T694A A5321G C8782T G22468T T28144C G28878A C29530T G29742A

EPI_ISL_437762
 2020-04-02 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah97/2020
 C84T C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437830 MT461631
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-6446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T T833C C1059T C2523T C3037T C14408T A23403G G25563T C27964T C29625T G29868A C29870-

EPI_ISL_437831 MT461632
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-6448/2020
 ATTAAAGGTTTA1- AC35WT C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T G28027C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_437835 MT461635
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-6466/2020
 ATTAAAGGTTTATACCTTCCCAG1- A31T C36T C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T G29543T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_437836 MT461636
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-6467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T T833C C1059T C3037T C7029T C14408T A23403G G25563T C27964T AGTGTAC29756- G29864R TG29867AA C29870A

EPI_ISL_437837 MT461637
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-6472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T T833C C1059T C3037T C10965T C14408T A23403G G25563T C27964T A29903-

EPI_ISL_437838 MT461638
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-6473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T TG29867AA C29870A

EPI_ISL_437865 MT461662
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/CT-UW-6564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACA1- C241T C619T G626A C1059T C3037T C14408T A14912G A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437866 MT461663
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/CT-UW-6565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- AAC34WWT C241T C3037T C14408T A23403G G28851T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437868 MT461664
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/CT-UW-6569/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA G105T C241T C3037T C14408T C18877T G19962A A23403G A24123G G25563T G28090C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_437870 MT461666
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/CT-UW-6573/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C6026T C14408T A23403G G25563T C28836T

EPI_ISL_437872 MT461668
 2020-04-02 2020-05-11
 United States SARS-CoV-2/human/USA/CT-UW-6576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AAC34TTT C241T C1059T C3037T C11916T C14408T C18252T A23403G G25563T -29904AAAAA

EPI_ISL_438122
 2020-04-02 2020-05-12
 Austria hCoV-19/Austria/CeMM0359/2020
 C241T C3037T C14408T T22521K A23403G C24621T C27046T GGG28881AAC AAAAAAAAA29895-

EPI_ISL_438126
 2020-04-02 2020-05-12
 Austria hCoV-19/Austria/CeMM0363/2020
 C241T C3037T C12073T C14408T A23403G C24642T C27046T G28395T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_438141
 2020-04-02 2020-05-12
 United States hCoV-19/USA/WA-S588/2020
 C8782T A13712G C17747T C17766T A17858G C18060T T28144C

EPI_ISL_438806
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438824
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T13345C C17999T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_440566
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7A3EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440579
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-78DEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5554T C14408T A23403G G24368T C25463A G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440593
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7A46F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T A3523G C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_440621
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-79B89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC

EPI_ISL_440729
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/BRIS-122939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835Y G1697K C3037T C4832Y A11782G C14408T G22203T A23403G T25202K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_440960
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D35BC/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_440962
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D35E9/2020
 C241T C1059T C1437T C3037T T3745C T13006C C14408T A23403G G25563T

EPI_ISL_440964
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3604/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_440965
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3613/2020
 C241T C913T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_440966
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3622/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_440967
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3631/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_440968
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3640/2020
 C241T C3037T C14408T C16289T C17474T A23403G G25429T G28975T

EPI_ISL_440969
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D365F/2020
 C241T C1869T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_440970
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D366E/2020
 C241T C2388T A2480G C2558T G11083T C14805T G26144T

EPI_ISL_440991
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D380E/2020
 C241T C3037T C14408T C16289T A23403G C24632T G25429T

EPI_ISL_440993
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D382C/2020
 C241T C3037T C5784T C14408T A23403G GGG28881AAC

EPI_ISL_440994
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D383B/2020
 G1440A G2891A G10384T C10507T C29640T

EPI_ISL_440995
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D384A/2020
 C241T C3037T C14408T C18657T A23403G GGG28881AAC

EPI_ISL_440996
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3859/2020
 G1440A G2891A G10384T C10507T C29640T

EPI_ISL_440997
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3868/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_440998
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3877/2020
 A2480G C2558T G11083T C14805T G18255T C20428T C22088T G26144T

EPI_ISL_440999
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3886/2020
 C241T G2164A C3037T C14408T C18252T A23403G GGG28881AAC

EPI_ISL_441000
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3895/2020
 C241T C3037T C6401T C14408T A23403G T27740C GGG28881AAC

EPI_ISL_441001
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D38A4/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_441002
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D38B3/2020
 C241T C3037T C8016T C14408T A23403G A26530G

EPI_ISL_441003
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D38C2/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_441004
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/LOND-D38D1/2020
 C241T C3037T C14408T C21621T A23403G

EPI_ISL_441228
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7A247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_441301
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-79CB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17010T A23403G GGG28881AAC C29281T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_441305
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-79B6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C843T C3037T G8137T C14408T A23403G GGG28881AAC AAAAA29899-

EPI_ISL_441313
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-79D47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C990T C3037T C4002T G10097A C11355T C13536T C14408T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_441319
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-79F14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10232T C14408T A23403G

EPI_ISL_441335
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-79B4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441591
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7B7ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6627T C14408T A22803G A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_441800
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7A57B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G4185A G11083K C14805T T25202K G25906T G26144T C29013T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442478
 2020-04-02 2020-05-12
 United Kingdom hCoV-19/England/SHEF-D0CBA/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_443254
 2020-04-02 2020-05-12
 United States hCoV-19/USA/MN-UMGC-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C18267T G21793C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_443258
 2020-04-02 2020-05-12
 France hCoV-19/France/IDF4791/2020
 T10A C241T C2416T C3037T C10969T G11083T C14408T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_443259
 2020-04-02 2020-05-12
 France hCoV-19/France/IDF4793/2020
 C241T C2416T C3037T C10969T G11083T C13426T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_443260
 2020-04-02 2020-05-12
 France hCoV-19/France/IDF4843/2020
 C241T C2416T C3037T G8371T C14408T C17690T A20276G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_443262
 2020-04-02 2020-05-12
 France hCoV-19/France/BFC5012/2020
 C36T C241T C3037T G4399T C6196T C14408T C15324T A23403G TTG25532- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_443264
 2020-04-02 2020-05-12
 France hCoV-19/France/BFC5019/2020
 C241T C1059T C3037T G13201T C14408T G21839T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_443285
 2020-04-02 2020-05-12
 France hCoV-19/France/IDF5655/2020
 C241T C1059T C3037T A7930G C9096T C14408T A23403G G25563T C25714T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_443286
 2020-04-02 2020-05-12
 France hCoV-19/France/IDF5657/2020
 C241T C3037T C14408T C15324T A23403G G28851T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_443291
 2020-04-02 2020-05-12
 France hCoV-19/France/B5685/2020
 C241T C3037T C14408T C15324T C20371T A23403G C24442T G25218T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_443315
 2020-04-02 2020-05-12
 France hCoV-19/France/HF6466/2020
 C241T C1059T C3037T C9344T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_444711
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC594/2020
 C241T C1059T C3037T C4965T C14408T G17964T A23403G G25563T

EPI_ISL_444712
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC595/2020
 C241T C1059T C3037T C14408T T19521C A23403G G25563T A28615G

EPI_ISL_444713
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC596/2020
 C241T C1059T C3037T A4884G C14408T A23403G G25563T

EPI_ISL_444724
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC607/2020
 C241T C1059T C1514A C3037T C14408T A23403G G25563T

EPI_ISL_444725
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC608/2020
 C241T C1059T C3037T C14408T A23403G A23419G G25563T C26625T

EPI_ISL_444726
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC609/2020
 C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T

EPI_ISL_444727
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC610/2020
 C241T C3037T C14408T A23403G C23997T C27046T GGG28881AAC

EPI_ISL_444730
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC613/2020
 C241T C1059T C3037T C14408T C18981T A23403G G25563T

EPI_ISL_444732
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC615/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444734
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC617/2020
 C241T C1059T C3037T C11916T C12473T C14408T A21356G A23403G G25563T

EPI_ISL_444735
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC618/2020
 C241T C1059T C3037T T4266C C14408T C20483T A23403G G25563T

EPI_ISL_444736
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC619/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T G28712A C28821A

EPI_ISL_444737
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC620/2020
 C241T C1059T G1598C C3037T C14408T A23403G G25563T A26433G G28851T G29399T

EPI_ISL_444738
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC621/2020
 C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T

EPI_ISL_444739
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC622/2020
 C241T C3037T T14104C C14408T C18877T A23403G G25563T

EPI_ISL_444740
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC623/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444741
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC624/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_444742
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NJ-NYUMC625/2020
 C241T C1059T C3037T T12979C C14408T A23403G G25563T

EPI_ISL_444743
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC626/2020
 C241T C1059T C1917T C3037T T6703C G10981T C14408T G20005A A23403G G25563T

EPI_ISL_444744
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NJ-NYUMC627/2020
 A142G C241T C1059T C3037T G10870T C11916T C14408T C18129T A23403G G25563T

EPI_ISL_444745
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC628/2020
 C241T C3037T G11083T C14408T C16293T A23403G A25575C

EPI_ISL_444746
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC629/2020
 C241T C1059T T2022G C3037T C4540T G12143T A14125G C14408T A23403G G25563T

EPI_ISL_444747
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC630/2020
 G124A C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444748
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC631/2020
 C241T C1059T C3037T C14408T G14792T C15763T A23403G G25563T

EPI_ISL_444749
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC632/2020
 C241T C1059T C3037T T11645A C11916T C14408T A23403G C23601T G25563T G28362T

EPI_ISL_444750
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC633/2020
 C241T C1059T C3037T C14408T C15763T A23403G G25563T

EPI_ISL_444751
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC634/2020
 C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T

EPI_ISL_444752
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC635/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444753
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC636/2020
 C241T C1059T C3037T C14408T A17994C A23403G G25563T C25889T

EPI_ISL_444754
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC637/2020
 C241T C1059T C3037T C6500T C14408T A23403G G25563T

EPI_ISL_444755
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NJ-NYUMC638/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444756
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC639/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T C25721T

EPI_ISL_444762
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC645/2020
 C241T C3037T C14408T G15181T C18877T A23403G G25563T

EPI_ISL_444764
 2020-04-02 2020-05-14
 United States hCoV-19/USA/NY-NYUMC647/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C27297T C27389T G29540A

EPI_ISL_444844
 2020-04-02 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1282/2020
 C241T C1059T C1302T C3037T T9454C C14408T A23403G G23426T G25563T

EPI_ISL_444846
 2020-04-02 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1288/2020
 C241T C3037T C8140T C14408T A20268G A23403G

EPI_ISL_445085 MT470219
 2020-04-02 2020-05-14
 Colombia SARS-CoV-2/human/COL/Cali-01/2020
 C241T C1059T C3037T C14408T A23122T A23403G G25563T

EPI_ISL_445120
 2020-04-02 2020-05-15
 United States hCoV-19/USA/LA-SR0265/2020
 C241T C1059T C3037T G6362A C7815T C10188T C14408T A23403G T24982C G25563T T26409C C27964T

EPI_ISL_445124
 2020-04-02 2020-05-15
 United States hCoV-19/USA/LA-SR0269/2020
 C241T C1059T C3037T G12988T C14408T C21302T A23403G G25563T C27964T

EPI_ISL_445132
 2020-04-02 2020-05-15
 United States hCoV-19/USA/LA-SR0277/2020
 C241T T469C C1059T C3037T C9319A C10319T C12085T C14408T A23403G C23506T G25563T C27964T

EPI_ISL_445146
 2020-04-02 2020-05-15
 United States hCoV-19/USA/LA-SR0291/2020
 C241T C1059T C3037T C14408T A23403G C23638T G25563T C27964T

EPI_ISL_445162
 2020-04-02 2020-05-15
 United States hCoV-19/USA/LA-SR0307/2020
 C241T C1059T C3037T C9603T C10319T C11344T C14408T A23403G G25563T C27964T

EPI_ISL_445219
 2020-04-02 2020-05-15
 Colombia hCoV-19/Colombia/Cali-01-2/2020
 C241T C1059T C3037T C14408T A23122T A23403G G25563T

EPI_ISL_445351
 2020-04-02 2020-05-15
 Chile hCoV-19/Chile/Santiago_55/2020
 A2480G C2558T C3096T C9170T G11083T T14263K C14805T G15088R G26144T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445353
 2020-04-02 2020-05-15
 Chile hCoV-19/Chile/Santiago_57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T T21632A A23403G GGG28881AAC C29253Y CA29838TG G29841A GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_445354
 2020-04-02 2020-05-15
 Chile hCoV-19/Chile/Santiago_58/2020
 AT1GA C241T C3037T C8389T C14408T C19554T T20738W A21446G A23403G G25563T C28310Y TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445423
 2020-04-02 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-28C59/2020
 C241T C1059T C3037T C7869T C14408T A23403G G24368T C24621T G25563T G29864R

EPI_ISL_445433
 2020-04-02 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-28D38/2020
 ATTA1- C241T C3037T C14408T G19962T C21090M A23403G T23905Y

EPI_ISL_445434
 2020-04-02 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-28D56/2020
 G1440A G2891A C25669T G28378C G28851T

EPI_ISL_446270
 2020-04-02 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-30007/2020
 A1- C3738T G11083T G12188T C14805T T17247C G26144T

EPI_ISL_447025
 2020-04-02 2020-05-16
 Thailand hCoV-19/Thailand/Bangkok-0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G11083T G14653A C15240T A20284G C28311G T28688C G29737T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_447105 MT506566
 2020-04-02 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20308/2020
 C180T C241T C1059T C3037T C14408T C14422T A23403G G25563T G28314A

EPI_ISL_447264
 2020-04-02 2020-05-17
 Israel hCoV-19/Israel/990300860/2020
 C241T C1059T C3037T C11916T C14408T C17373T C18998T A23403G C25517T G25563T G26062T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447353
 2020-04-02 2020-05-17
 Israel hCoV-19/Israel/2099421/2020
 C241T C3037T G5253A C14408T A23403G C25350T AAAAAAAAAAAA29892-

EPI_ISL_447355
 2020-04-02 2020-05-17
 Israel hCoV-19/Israel/2099251/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447401
 2020-04-02 2020-05-17
 Israel hCoV-19/Israel/2046616/2020
 C241T C1059T C3037T C11916T G13459T C14408T C18998T A23403G G25563T G26458T G28378T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447402
 2020-04-02 2020-05-17
 Israel hCoV-19/Israel/2046614/2020
 C241T C1059T C3037T C11916T C14408T C18998T G19006T A23403G G25563T A29439T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447436
 2020-04-02 2020-05-17
 Israel hCoV-19/Israel/13077497/2020
 C241T C1059T C3037T C14408T C19983T A23403G C24023T G25563T AAAAAAAAAAAA29892-

EPI_ISL_447440
 2020-04-02 2020-05-17
 Israel hCoV-19/Israel/13077377/2020
 C241T C3037T C14408T C20480T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447575
 2020-04-02 2020-05-17
 India hCoV-19/India/CCMB_J458/2020
 ATTAAAGGTTT1- A6081G C6312A G11083T C13730T C18511T G19679T C22663A C23929T C28311T

EPI_ISL_447576
 2020-04-02 2020-05-17
 India hCoV-19/India/CCMB_J232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- T1723C C6312A G11083T AATGC12358CTCTT C13730T G19679T C23929T C28311T

EPI_ISL_447577
 2020-04-02 2020-05-17
 India hCoV-19/India/CCMB_J321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6310A C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447578
 2020-04-02 2020-05-17
 India hCoV-19/India/CCMB_J327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C6312A G11083T C13730T C15048T C23929T T27273C C28311T

EPI_ISL_447785
 2020-04-02 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_447854
 2020-04-02 2020-05-18
 India hCoV-19/India/CCMB_J350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A6081G C6312A G11083T C13730T C23929T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447855
 2020-04-02 2020-05-18
 India hCoV-19/India/CCMB_J318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1707T C6310A C6312A G11083T C13730T C19524T C23929T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447856
 2020-04-02 2020-05-18
 India hCoV-19/India/CCMB_J374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T A21792T C23929T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447857
 2020-04-02 2020-05-18
 India hCoV-19/India/CCMB_J390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6310A C6312A G11083T G12685T C13730T C19524T C23929T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447890 MT481930
 2020-04-02 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1139/2020
 ATTAAAGGTTTATA1- C241T GTT669- C1059T C3037T C14408T C15182G C18457T A23403G C25487T G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_448119
 2020-04-02 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1601/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_449793
 2020-04-02 2020-05-19
 Norway hCoV-19/Norway/2388/2020
 ATTAAAGGTT1- C241T C1059T C3037T G5148T T13210G C14408T A23403G C24621T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_450330
 2020-04-02 2020-05-20
 India hCoV-19/India/CCMB_J375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6312A G11083T C13730T AA21550MW A21792T C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450402
 2020-04-02 2020-05-21
 United States hCoV-19/USA/NY-NYUMC685/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_450801 MT507279
 2020-04-02 2020-05-22
 United States SARS-CoV-2/human/USA/GA-CDC-4518/2020
 C241T C1059T T1211G C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450836
 2020-04-02 2020-05-22
 Sweden hCoV-19/Sweden/20-08715/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_450837
 2020-04-02 2020-05-22
 Sweden hCoV-19/Sweden/20-08718/2020
 C241T C854T C1059T C3037T G7027T G7452T C14408T A23403G G24368T G25563T C27005T

EPI_ISL_451972 MT511067
 2020-04-02 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P11/2020
 C241T C3037T C14408T G14580T A23403G G29477T C29870M

EPI_ISL_451980 MT511075
 2020-04-02 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P19/2020
 C19T C106T C241T C3037T A8072G C14408T A23403G GGG28881AAC C29870M

EPI_ISL_451983 MT511078
 2020-04-02 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P22/2020
 C241T C541T A544R C3037T G4180T T7767C C11704T C14408T G19254T A23403G GGG28881RRS

EPI_ISL_453507
 2020-04-02 2020-05-27
 United Kingdom hCoV-19/England/NORT-28994E/2020
 C241T C2902T C3037T C14408T A23403G A24385G GGG28881AAC

EPI_ISL_453509
 2020-04-02 2020-05-27
 United Kingdom hCoV-19/England/NORT-2899D5/2020
 C241T C3037T C3373A C11195T C14408T A23403G G24056A T25180C GGG28881AAC

EPI_ISL_453961
 2020-04-02 2020-05-28
 Portugal hCoV-19/Portugal/PT0247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T C17747T G21761T A23403G G24077T T28705C C29555T CTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29788-

EPI_ISL_453963
 2020-04-02 2020-05-28
 Portugal hCoV-19/Portugal/PT0249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453965
 2020-04-02 2020-05-28
 Portugal hCoV-19/Portugal/PT0251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G14118A C14408T C17750T C21707T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453966
 2020-04-02 2020-05-28
 Portugal hCoV-19/Portugal/PT0252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454371
 2020-04-02 2020-05-28
 United States hCoV-19/USA/PA-MGEL88/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454375
 2020-04-02 2020-05-28
 United States hCoV-19/USA/PA-MGEL94/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454379
 2020-04-02 2020-05-28
 United States hCoV-19/USA/PA-MGEL99/2020
 C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T G29540A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454641 MT533238
 2020-04-02 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1283/2020
 ATTAAAGGTTTATACC1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T G28628T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_454732
 2020-04-02 2020-05-28
 Russia hCoV-19/Russia/Moscow_PMVL-6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T T17206C A23403G GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_454776
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10027/2020
 ATTAAAG1- C241T C3037T G9890T C12915T C14408T C20148T A23403G G29422T AAAAAA29898-

EPI_ISL_455125
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T G22865T A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455126
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G G27478T C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455129
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455195
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6659G C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455252
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455261
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455294
 2020-04-02 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19343T T19839C A23403G GGAACTGTAACTTTG25423- GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455431
 2020-04-02 2020-05-29
 Nigeria hCoV-19/Nigeria/OY045A-CV35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- A2480G C2558T G11083T C14805T G26144T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455597
 2020-04-02 2020-06-01
 Australia hCoV-19/Australia/VPRL005/2020
 C241T C583T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_455644
 2020-04-02 2020-06-01
 India hCoV-19/India/S14/2020
 C241T C3037T C13730T C14408T A23403G

EPI_ISL_455707
 2020-04-02 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_4189/2020
 C241T C3037T C14408T A23403G T27318C GGG28881AAC

EPI_ISL_455783
 2020-04-02 2020-06-01
 India hCoV-19/India/RMRC6/2020
 C241T C3037T C14408T A23403G G25563T C26735T A29039T GTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29690-

EPI_ISL_456075
 2020-04-02 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G T27299C C27644T GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_456082
 2020-04-02 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2210T C3037T C14408T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456294
 2020-04-02 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1887/2020
 C241T C2189T C3037T C9438T C14408T A23403G

EPI_ISL_456302
 2020-04-02 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1903/2020
 C241T C1059T C3037T T5013C C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456303
 2020-04-02 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1907/2020
 C241T C1059T C14408T C17352T C24034T C28821A

EPI_ISL_456305
 2020-04-02 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1910/2020
 C3096T C12781T G13627T C14805T C15540T A15618C G17944T G26144T A28338G

EPI_ISL_456310
 2020-04-02 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1925/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456908
 2020-04-02 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB2966/2020
 C241T C3037T C12400T C14408T A23403G

EPI_ISL_456952
 2020-04-02 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5040/2020
 C593T C8782T G9928T C26088T T28144C

EPI_ISL_457058
 2020-04-02 2020-06-02
 United Kingdom hCoV-19/England/EXET-135423/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC

EPI_ISL_457643
 2020-04-02 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CAA5F/2020
 C241T C3037T C14408T G22427A A23403G G27441T GGG28881AAC

EPI_ISL_460139 MT520214
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00651/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T T26102C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460189 MT520264
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00633/2020
 ATTAAAGGTTTA1- G105T C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_460197 MT520272
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00653/2020
 ATTAAA1- C241T C2416T C3037T T10216C C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460254 MT520329
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14408T C16869T A23403G G25563T C25714T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460298 MT520373
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- G105T C241T C3037T C14408T C18877T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460330 MT520405
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00654/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2106T C3037T C14408T A23403G C28603T G28899T A29806T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460386 MT520461
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00648/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T T833C C1059T C3037T C14408T C16616T A18163T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_460419 MT520494
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00646/2020
 ATTAAAGGTTTATACCTTCCCA1- C8782T C17747T A17858G C18060T A24694T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460443 MT520518
 2020-04-02 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00635/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C2416T C3037T A6672G C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_460660
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C29548A G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460676
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460683
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C29548A G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460795
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460829
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC C29108T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460830
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9749G C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461035
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3044T T11638C C14408T G21786T A23403G C27549T GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461036
 2020-04-02 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2909G C3037T C3044T T11638C C14408T G21786T A23403G C27549T GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461408 MT683387
 2020-04-02 2020-06-06
 United States SARS-CoV-2/human/USA/CT-UW-6577/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_461409
 2020-04-02 2020-06-06
 United States hCoV-19/USA/CT-UW-6582/2020
 A1- A34H C36T C241T C1059T C3037T C5654T C10851T C14408T G17658T A23403G G25477T G25563T G27754T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876C

EPI_ISL_461411
 2020-04-02 2020-06-06
 United States hCoV-19/USA/CT-UW-6586/2020
 ATTAAAGGTTT1- T13C C241T C1059T C3037T C3253T G9116A C14408T C18348T T18471C A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_461417 MT683391
 2020-04-02 2020-06-06
 United States SARS-CoV-2/human/USA/CT-UW-6594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGA1- C1059T C3037T C6026T C14408T A23403G G25563T C28836T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_461735
 2020-04-02 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5388/2020
 C241T C2841T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_461736
 2020-04-02 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5389/2020
 C241T C2841T C3037T C10798A C13862T C14408T C18086T A23403G C28836T

EPI_ISL_461737
 2020-04-02 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5390/2020
 C241T C2841T C3037T C10798A C11824T C13862T C14408T A23403G C28836T

EPI_ISL_461738
 2020-04-02 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5391/2020
 C241T C313T C3037T C11824T G12328A C14408T A23403G GGG28881AAC

EPI_ISL_462228
 2020-04-02 2020-06-08
 Belgium hCoV-19/Belgium/VGM-0402374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G C26894T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462237
 2020-04-02 2020-06-08
 Belgium hCoV-19/Belgium/MG-0402383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462360
 2020-04-02 2020-06-08
 Singapore hCoV-19/Singapore/242/2020
 C6310A C6312A C9180T G11083T C13730T T17643C C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_463927
 2020-04-02 2020-06-11
 Canada hCoV-19/Canada/QC_AQ1/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T G22232C A23403G G25563T

EPI_ISL_463930
 2020-04-02 2020-06-11
 Canada hCoV-19/Canada/QC_AQ6/2020
 C241T C3037T G3728T C14408T C15324T A23403G C25433T

EPI_ISL_463936
 2020-04-02 2020-06-11
 Canada hCoV-19/Canada/QC_AS4/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_464012
 2020-04-02 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0047/2020
 C241T C3037T C14408T A23403G

EPI_ISL_464046
 2020-04-02 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0055/2020
 C241T C1059T C3037T C14408T G14653T C17339T A23403G G25563T G28368A

EPI_ISL_464056
 2020-04-02 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0052/2020
 C241T C1059T C3037T C9611T G13984T C14408T A23403G G25563T

EPI_ISL_464093 MT590599
 2020-04-02 2020-06-11
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-29/2020
 T490A C3177T C6040T C8782T T11470C G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AA29902-

EPI_ISL_464144
 2020-04-02 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_33/2020
 C241T C14408T T20891G A23403G AG24389CC GGG28881AAC

EPI_ISL_466036
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20146018204/2020
 C241T C751T C3037T G6611K C9491Y C14408T A23403G

EPI_ISL_466037
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20146018302/2020
 C241T C3037T C14408T A23403G G26914T C27145S G27238T

EPI_ISL_466048
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20148001404/2020
 C241T C3037T C8025T C14408T A20268G A23403G C26079Y G29734C

EPI_ISL_466069
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20148045404/2020
 A2480G C2558T C7011T G11405A C14805T A23403R G26144T C28869T

EPI_ISL_466071
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20148049704/2020
 A2480G C2558T C7011T G11083T G11405A C14805T C17285Y C19895T G26144T C28869T G29779T

EPI_ISL_466077
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20148067304/2020
 C241T C1059T C1437T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_466081
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149001104/2020
 C241T C3037T C14408T C23086T A23403G A27237G GGG28881AAC

EPI_ISL_466086
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149002404/2020
 C241T C3037T C14408T A23403G C28377T GGG28881AAC

EPI_ISL_466088
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149002704/2020
 C241T A454C C3037T C14408T A23403G GGG28881AAC

EPI_ISL_466098
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149004004/2020
 C241T C3037T C14408T A23403G C28377T GGG28881AAC

EPI_ISL_466099
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149004104/2020
 A27G C241T C3037T C14408T A23403G C28377T GGG28881AAC

EPI_ISL_466153
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149012504/2020
 C241T C3037T C8025T C14408T A20268G A23403G C29679Y G29734C T29823Y

EPI_ISL_466195
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149043704/2020
 C241T C3037T C6738Y C14408T G21873K A23403G GGG28881AAC

EPI_ISL_466205
 2020-04-02 2020-06-11
 United Kingdom hCoV-19/England/20149051704/2020
 C8782T C13430T C17747T A17858G C18060T G18756T C21145T G22933R G25186T T27384C T28144C

EPI_ISL_467184
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003705/2020
 C241T C2023T C3037T C14408T A20268G A23403G T29637C G29734C

EPI_ISL_467186
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003687/2020
 C241T C3037T C14408T A20268G A23403G C28000T G28985T

EPI_ISL_467198
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003685/2020
 C8782T C10029T C19524T C26088T G28079A T28144C

EPI_ISL_467199
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003708/2020
 C241T C3037T C6696T C14408T T14565W A20268G G20373A A23403G

EPI_ISL_467207
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003697/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_467216
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003709/2020
 C241T C3037T C10582T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_467219
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003681/2020
 C8782T C19070T C26088T T28144C

EPI_ISL_467224
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003706/2020
 G11083T G26144T C26735T

EPI_ISL_467227
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003707/2020
 C8782T G9761T A9829M T12364A C13923T A19719T C26088T T28144C

EPI_ISL_467229
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003694/2020
 C8782T A10486G G22331R C26088T T28144C G29402T

EPI_ISL_467230
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003677/2020
 C241T C556Y A919R C3037T C10556Y C14408T A20268G A23403G C28000T G28985T

EPI_ISL_467235
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003702/2020
 C241T C3037T C14408T A20268G C21914Y A23403G G29734C

EPI_ISL_467249
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003691/2020
 C8152T C8782T C9665T G13993T C26088T T28144C

EPI_ISL_467256
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003698/2020
 C241T C3037T C14408T A20268G A23403G C24378T A28349T G29734C

EPI_ISL_467257
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003696/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_467259
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003700/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_467260
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003676/2020
 C241T C3037T C14408T G18756A A20268G A23403G G29734C

EPI_ISL_467261
 2020-04-02 2020-06-12
 Spain hCoV-19/Spain/COV003693/2020
 A169G C241T C3037T G6320T C8597A C14408T A20268G A23403G G24697T

EPI_ISL_467344
 2020-04-02 2020-06-12
 Brazil hCoV-19/Brazil/RJ-1555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A1515G C9223T G11083T C14805T T17247C C18348T G26144T G26918T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_467345
 2020-04-02 2020-06-12
 Brazil hCoV-19/Brazil/RJ-1574/2020
 ATTAAAGGTTT1- C241T C1420T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467346
 2020-04-02 2020-06-12
 Brazil hCoV-19/Brazil/RJ-1595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C492T A1515G C1915T C9223T G11083T C14805T C15848T T17247C T22618G G26144T C28332T C28500T GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467434
 2020-04-02 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_467435
 2020-04-02 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C2997T C3037T C14408T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_467552
 2020-04-02 2020-06-14
 United States hCoV-19/USA/NM-UNM-00113/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C4543T C14408T C18877T A20465G A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_467644
 2020-04-02 2020-06-14
 United States hCoV-19/USA/NM-UNM-00110/2020
 C241T C900T C3037T G4148T C14408T C18877T C23124G A23403G G25563T

EPI_ISL_467651
 2020-04-02 2020-06-14
 United States hCoV-19/USA/NM-UNM-00133/2020
 C241T C3037T C14408T G18859T A23403G G27084T GGG28881AAC

EPI_ISL_467652
 2020-04-02 2020-06-14
 United States hCoV-19/USA/NM-UNM-00134/2020
 C241T C3037T C14408T G18859T A23403G G27084T GGG28881AAC

EPI_ISL_467980
 2020-04-02 2020-06-16
 United States hCoV-19/USA/CA-SR0458/2020
 C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_468017
 2020-04-02 2020-06-16
 Australia hCoV-19/Australia/SAP019/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_468019
 2020-04-02 2020-06-16
 Australia hCoV-19/Australia/SAP014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_468358 MT628095
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C8782T T9094C T12883C C17747T A17858G C18060T T26171A T28144C

EPI_ISL_468499 MT628223
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1562/2020
 C241T C1059T C1887Y A2151R C3037T A13712G C14408T A17615G A23403G G25563T C29614T

EPI_ISL_468500 MT628224
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1563/2020
 ATTAAAGGTTTA1- C241T C1059T C1887Y C3037T C14408T A17615G A23403G G25563T C29614T

EPI_ISL_468530 MT628253
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1601/2020
 ATTAA1- C4776T C8782T C17104T C17747T A17858G C18060T G28086T T28144C

EPI_ISL_468625 MT631816
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1689/2020
 AT1- C241T C379A C1059T C3037T C14408T A20374G C21077Y A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468626 MT631817
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1690/2020
 ATTA1- C241T T277Y C379A C1059T C3037T C14408T A20374G A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_468628 MT631819
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1693/2020
 A1- C241T C379A C1059T C3037T C14408T T19551K A20374G A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468629 MT631820
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1694/2020
 C241T C379A C1059T C3037T C8683Y A10317R C13981T C14408T A20374G A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468631 MT631822
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C379A C1059T C3037T C14408T C15940Y C20233Y A20374G A23403G G25217K G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468632 MT631823
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1697/2020
 C241T C379A C1059T C3037T A8976R C14408T A20374G A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_468633 MT631824
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C379A C1059T C3037T C5986Y G6094K G6297K G9425K C14408T A20374G A23403G T23546Y G25563T C25889Y G29783K TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_468634 MT631825
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1700/2020
 T2Y C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468637 MT631828
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1704/2020
 C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_468638 MT631829
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1705/2020
 C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_468640 MT631831
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1709/2020
 C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468642 MT631833
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1711/2020
 A1- C241T C379A C1059T C3037T C14408T A20374G G22899K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469189
 2020-04-02 2020-06-17
 United States hCoV-19/USA/CT-Yale-263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T T17901Y C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469195
 2020-04-02 2020-06-17
 United States hCoV-19/USA/CT-Yale-271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6882C C13730T C14408T A23403G G25429T G28079T C29732G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469200
 2020-04-02 2020-06-17
 United States hCoV-19/USA/CT-Yale-277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G C23453T G25563T GGAGTACGATCGAGT29744- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469605
 2020-04-02 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469608
 2020-04-02 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12799E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10626T G11335T C14408T C22450T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469636
 2020-04-02 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1276B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469675
 2020-04-02 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1279CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C9118T C9724T G11083T C14805T A22964G G26144T G28882T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469704
 2020-04-02 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1279AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11335T C14408T C22450T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470901
 2020-04-02 2020-06-19
 Russia hCoV-19/Russia/Moscow_PMVL-8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T T19839C T20256G A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_471206
 2020-04-02 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471208
 2020-04-02 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3079T C13862T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471214
 2020-04-02 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471227
 2020-04-02 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T C26192T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471244
 2020-04-02 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18211C A23403G G25563T C27964T A29143C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471541
 2020-04-02 2020-06-22
 Brazil hCoV-19/Brazil/SP-126/2020
 T25G C241T C3037T C5812T C12053T C14408T A23403G G25088T GGG28881AAC GGA29861TAT AAAAAAAAAAAAA29891-

EPI_ISL_471956
 2020-04-02 2020-06-23
 United Kingdom hCoV-19/England/EXET-137236/2020
 ATG1605- G14335T

EPI_ISL_474248
 2020-04-02 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-29D19/2020
 AT1- C241T C3037T T4186C G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_474803
 2020-04-02 2020-06-23
 Spain hCoV-19/Spain/Albacete-COV003760/2020
 C241T C3037T C8299T C14408T A20268G A23403G

EPI_ISL_474818
 2020-04-02 2020-06-23
 Spain hCoV-19/Spain/Albacete-COV003792/2020
 C241T C3037T C6723Y C14408T A20268G A23403G

EPI_ISL_474836
 2020-04-02 2020-06-23
 Spain hCoV-19/Spain/Alcala_la_Real-COV002998/2020
 C241T C1348T C3037T C14408T A20268G A22803G A23403G

EPI_ISL_474890
 2020-04-02 2020-06-23
 Spain hCoV-19/Spain/Granada-COV003010/2020
 C8782T T9477A G13793A C14805T G25793K G25979T G27201R T28144C C28657T C28863T

EPI_ISL_475119
 2020-04-02 2020-06-23
 Sweden hCoV-19/Sweden/20-50595/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475149
 2020-04-02 2020-06-23
 Sweden hCoV-19/Sweden/20-50600/2020
 C241T C1059T C3037T C8961T C14408T A23403G G24368T G25563T

EPI_ISL_475150
 2020-04-02 2020-06-23
 Sweden hCoV-19/Sweden/20-50601/2020
 C241T C1059T C3037T G9431T C14408T A23403G G24368T G25563T C26029A

EPI_ISL_475151
 2020-04-02 2020-06-23
 Sweden hCoV-19/Sweden/20-50615/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_475575
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC100/2020
 C241T C313T C2291T C3037T A4229C A9187G A17062C C17077T G18677T C19913T T22690C A23403G G23564T C24096T A28254T GGG28881AAC

EPI_ISL_475576
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC101/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T C29769T

EPI_ISL_475577
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC102/2020
 C241T C3037T C14408T G18985T A23403G A26530G

EPI_ISL_475579
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC104/2020
 C241T C3037T C14408T G18985T A23403G A26530G

EPI_ISL_475580
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC105/2020
 C241T C379A C1059T C3037T G9479T C14408T A23403G G25563T G28079T

EPI_ISL_475581
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC106/2020
 C7979T T11301C G12243T T15794C A16847T TAAAA17201- G24858A C25466T G27261T AA27344TT A27354G

EPI_ISL_475582
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC107/2020
 C241T C1059T C3037T C12468T C14408T A23403G G25563T

EPI_ISL_475583
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC108/2020
 C241T C3037T A4748G T8883C C14408T A23403G GGG28881AAC

EPI_ISL_475587
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC111/2020
 G7673C C9967T T10084A G10796T A15389G C15391T T17264C T24156C G26755A G26962T

EPI_ISL_475588
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC112/2020
 C241T C1059T C3037T C14408T T22939C A23403G G25563T T27384C

EPI_ISL_475590
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC114/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_475709
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC92/2020
 C241T C1059T C3037T T3897G G5018A C14408T A23403G G25563T C27577T

EPI_ISL_475712
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC95/2020
 C884T G1397A T3160C C6468A G8653T C10156T G11083T A25980C C27970T T28688C G29742T

EPI_ISL_475713
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC96/2020
 C241T C379A C1059T C3037T C14408T C22208T A23403G G25563T C29769T

EPI_ISL_475714
 2020-04-02 2020-06-23
 United States hCoV-19/USA/CA-CSMC97/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28300T

EPI_ISL_475894
 2020-04-02 2020-06-25
 Austria hCoV-19/Austria/CeMM0527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3264T C14408T A23403G G25555K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475932
 2020-04-02 2020-06-25
 Austria hCoV-19/Austria/CeMM0628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15380T G18255T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475933
 2020-04-02 2020-06-25
 Austria hCoV-19/Austria/CeMM0631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4788Y G11083T C14805T T17247C G22180A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476070
 2020-04-02 2020-06-25
 Hungary hCoV-19/Hungary/UD-6278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C103T C241T C1059T C3037T C14408T A23403G G25563T G29405C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476790
 2020-04-02 2020-06-25
 United States hCoV-19/USA/CA-CZB-1773/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C14408T A21436W A23403R G25563T GAGGCCACGCGGAGTACGATCGAGT29734- AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_476791
 2020-04-02 2020-06-25
 United States hCoV-19/USA/CA-CZB-1774/2020
 T13C C241T C1059T C3037T C14408T T20799C A23403G G25563T

EPI_ISL_477816
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/CAMB-73C6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A A10374- C14408T G22541T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478433
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6DB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27281T GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478434
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6DC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478435
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6DDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5646T C14408T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478438
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6E45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4285T A10948G C14408T A23403G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478513
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/NORT-283971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T C15857T A23403G T23722A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478516
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/NORT-283A8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T7778G G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478517
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/NORT-283A9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T G13624T C14805T T17247C G26144T G26976T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479137
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2322/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC

EPI_ISL_479141
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/OXON-B23E6/2020
 C241T C1059T C3037T C14408T G21974T A23403G G24368T G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_479148
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/OXON-B24C5/2020
 C241T C3037T T3982C C14408T T17150C A23403G C25587T C27046T C28344A GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_479156
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2586/2020
 C241T C313T C3037T G4109A C8090T C14408T A23403G G25456T GGG28881AAC AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_479162
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2647/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_479169
 2020-04-02 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2708/2020
 A1- C241T C1912T C3037T C14408T G14580T G18674A A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_480070
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C823T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480071
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480091
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480135
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480136
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_480137
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C313T C3037T C14408T A23403G GGG28881AAC GTACGATCGAGT29747- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480138
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C6099T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480139
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G G25879T GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_480140
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C12672T C14408T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480169
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0511/2020
 ATTAAAGGTTT1- C241T C313T C3037T C14408T A23403G G28845T GGG28881AAC G28975T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480170
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T A3075G G4300T C14408T A23403G G25249T G25563C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480171
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480172
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T G4300T C14408T A23403G G25249T G25563C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480185
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480186
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T C14697T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480203
 2020-04-02 2020-07-01
 Japan hCoV-19/Japan/PG-0547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C14408T A20268G A23403G TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480808 MT703975
 2020-04-02 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0157/2020
 AT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_480810 MT703977
 2020-04-02 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0159/2020
 AT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_480811 MT703978
 2020-04-02 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0160/2020
 AT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480812 MT703979
 2020-04-02 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0161/2020
 ATTAAA1- C241T C1059T C3037T C6568T C14408T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_481271 MT704125
 2020-04-02 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0025/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T C14649T A23403G G25563T G29690T

EPI_ISL_481649
 2020-04-02 2020-07-03
 Finland hCoV-19/Finland/2A92SVIIC/2020
 C241T C589T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481650
 2020-04-02 2020-07-03
 Finland hCoV-19/Finland/2A10SVIIC/2020
 C241T C3037T C14408T A20268G A23403G G24197T G26450T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481651
 2020-04-02 2020-07-03
 Finland hCoV-19/Finland/2A68SVIIIA/2020
 C241T C1059T C3037T A11983G C14408T A23403G G24368T G25563T A29683G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481652
 2020-04-02 2020-07-03
 Finland hCoV-19/Finland/2A71SVIIIA/2020
 C241T C1059T C3037T C9565T A13653G C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481653
 2020-04-02 2020-07-03
 Finland hCoV-19/Finland/2A72SVIIIA/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C28833T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481654
 2020-04-02 2020-07-03
 Finland hCoV-19/Finland/2A77SVIIIA/2020
 C241T C1059T C3037T T11488C C14408T A23403G G24368T G25563T G28003T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481655
 2020-04-02 2020-07-03
 Finland hCoV-19/Finland/2A82SVIIIA/2020
 C241T C1059T C3037T T11488C C14408T A23403G G24368T G25563T G28003T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481748
 2020-04-02 2020-07-03
 Canada hCoV-19/Canada/NB_250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482450
 2020-04-02 2020-07-03
 United States hCoV-19/USA/OR-PROV-209/2020
 C241T C1059T C3037T G6367T C14408T C14571T A23403G G25563T

EPI_ISL_482454
 2020-04-02 2020-07-03
 United States hCoV-19/USA/OR-PROV-219/2020
 C241T C1059T C3037T C14408T A17892G A23403G G25563T

EPI_ISL_483166
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0476-SAN/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11671T C14408T A23403G G25563T

EPI_ISL_483169
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0481-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483178
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0493-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_483187
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0503-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- A2420C G4105T C8782T C17747T A17858G C18060T A22005G T28144C

EPI_ISL_483191
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0512-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T1211G C3037T C14408T A23403G G25563T C27964T

EPI_ISL_483362
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0794-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T T1211G C3037T C14408T A23403G G25563T C27964T

EPI_ISL_483366
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0799-SAN/2020
 C32T C241T C1059T C3037T G3892T C14408T A23403G G25563T

EPI_ISL_483380
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0820-SAN/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C5467T C8389T C12249T C13487T C14408T A23403G G25563T

EPI_ISL_483381
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0821-SAN/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483384
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0827-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_483440
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0981-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_483444
 2020-04-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0987-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T C11671T C14408T A23403G G25563T

EPI_ISL_486865
 2020-04-02 2020-07-12
 Senegal hCoV-19/Senegal/6847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C3874T G8371T C14408T C19200T A23403G G25563T T27210C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_487689
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487733
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2602A C3037T C14408T C16289T CG21304AA A23403G G25429T C29679T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487838
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A361G C3037T C11775T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487971
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C854T ATG1605- C11173Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488476
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-2838ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y C1059Y A2219R C3037Y C5581Y G11083K G11521K C14408Y C14805Y G21123K C23185Y A23403R T25202K G25563K G26144K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488618
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-2958BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17410Y G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488630
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-283B99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488640
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-283AC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1350T A2480G C2558T G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488688
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-283ABA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3297R C14408T G15243T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488697
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-295930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488699
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-295921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T TTA18785- A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488883
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488903
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C27393T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488911
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3428C C8127T C14408T A23403G A27660G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488939
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488942
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488974
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9890T C9988T C14408T T17139C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488990
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488991
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5461T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488999
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489013
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12357T C14408T C15540T T17126C A20268G A23403G C23613T C29743T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489023
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5907T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489046
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T G7553K C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489057
 2020-04-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491121
 2020-04-02 2020-07-16
 Oman hCoV-19/Oman/8556/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C8655T G10265A C14408T C16293T C18395T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856CT

EPI_ISL_491135
 2020-04-02 2020-07-16
 Oman hCoV-19/Oman/8290/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C4246T G10265A C14408T C16293T A23403G T23482C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491541
 2020-04-02 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4752T C14408T A23403G G25563T T29588Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491578
 2020-04-02 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491921 MT776415
 2020-04-02 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T16506C T18736C C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492066 MT775826
 2020-04-02 2020-07-19
 Poland SARS-CoV-2/human/POL/PL_P41/2020
 T10W T13W C241T C3037T C3587T G7936A C11572T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_492069 MT775829
 2020-04-02 2020-07-19
 Poland SARS-CoV-2/human/POL/PL_P44/2020
 ATTAAA1- T10A T13A C241T C3037T C3587T G7936A C11572T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_493064
 2020-04-02 2020-07-20
 United States hCoV-19/USA/WY-WYPHL-20007405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A C29870M

EPI_ISL_493125 MT791312
 2020-04-02 2020-07-20
 United States SARS-CoV-2/human/USA/WY-WYPHL-20007411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G24977C G25563T C29870M

EPI_ISL_493126
 2020-04-02 2020-07-20
 United States hCoV-19/USA/WY-WYPHL-20007413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G24977C G25563T

EPI_ISL_493127
 2020-04-02 2020-07-20
 United States hCoV-19/USA/WY-WYPHL-20007414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C14408T A23403G G24977C G25563T C29870M

EPI_ISL_494230
 2020-04-02 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168357/2020
 ATTA1- C241T C3037T C14408T C15237T T21722C A23403G G25459T GGG28881AAC

EPI_ISL_494385
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1140/2020
 ATT1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494394
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494409
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1167/2020
 C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494410
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1168/2020
 ATTAAA1- C241T C1962T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494411
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1568T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494417
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494418
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1182/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494419
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1183/2020
 ATTAAAGGTT1- C241T C3037T C14408T C17747T A23403G C25350T

EPI_ISL_494421
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1185/2020
 ATTAA1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494427
 2020-04-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494627
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1504/2020
 ATTA1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494629
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1506/2020
 C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494630
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494632
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1510/2020
 ATTAAAGGTTT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494722
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1661/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_494724
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1663/2020
 C241T C1059T C3037T C7932T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_494726
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1665/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_494730
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1670/2020
 ATTAAA1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494731
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_494737
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1677/2020
 ATT1- C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T

EPI_ISL_494741
 2020-04-02 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C2623A C3037T C12473T C14408T A23403G G25563T C27964T

EPI_ISL_495378 MT791914
 2020-04-02 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0472/2020
 AT1- C241T C3037T A3090G C14408T T15102C C18877T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_499285
 2020-04-02 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1E48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5314T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499448
 2020-04-02 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1694BD/2020
 ATT1- C241T C3037T C6990T G11083K C14408T A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_500517
 2020-04-02 2020-07-29
 United States hCoV-19/USA/SD-UW-MAYO73/2020
 A1- C36T C241T C1059T C3037T A10323G C14408T G20274T A23403G G25563T C26625T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_500518
 2020-04-02 2020-07-29
 United States hCoV-19/USA/MN-UW-MAYO79/2020
 AT1- A31T AAC34TTT C241T C1059T C1314T C3037T C14408T A23403G G25563T A27821G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_501169
 2020-04-02 2020-07-30
 United States hCoV-19/USA/TX-GCID-192000207/2020
 ATTAAAGGTT1- C241T C3037T C14408T G20679T A23403G AAAAAAAAAAAAAAAAAAAAAAAAA29879C

EPI_ISL_501211
 2020-04-02 2020-07-31
 Malaysia hCoV-19/Malaysia/5056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C6027T A10236G G11083T C13536T C14805T T17247C C17750Y C24130T G25563T G26144T C28695T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_506988
 2020-04-02 2020-08-02
 South Korea hCoV-19/Korea/KCDC2194/2020
 ATT1- C241T C3037T C14408T A23403G G27670T

EPI_ISL_506989
 2020-04-02 2020-08-02
 South Korea hCoV-19/Korea/KCDC2195/2020
 AT1- C241T C3037T C14408T A23403G G27670T

EPI_ISL_506991
 2020-04-02 2020-08-02
 South Korea hCoV-19/Korea/KCDC2197/2020
 ATTAAAGGTTTAT1- A2480G C2558T A3010G G11083T T14565C C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507131
 2020-04-02 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D1BBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507132
 2020-04-02 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D1BC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T G11771A C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507133
 2020-04-02 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D1BD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T G16475A A20355G A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507615
 2020-04-02 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C203T C241T C1059T C1684T C3037T T6905G C8290T C10815Y C14408T C18839T A23403G G25563T C27641T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_507621
 2020-04-02 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T A5563T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_508964
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1973T C3037T C14408T G16228A G22051T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508965
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C2416T C3037T G8371T C14408T T18700G A23403G G24193A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508966
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T G5230T C14408T G17334T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_508967
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T A23403G C23481T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508968
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGG1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508969
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508970
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC G29751A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_508971
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T T6511C C14408T A23403G G25563T TAAAGTTTCCATTTGGAATCTTGATTACATCATA27267- AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508972
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C337T C3037T C11747T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508973
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C313T C3037T C4551T C14408T A23403G T23605C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508975
 2020-04-02 2020-08-04
 France hCoV-19/France/ARA18826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCT1- C241T C3037T C14408T C20483T C21914T A23403G G25563T G28001T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_509444 MT827206
 2020-04-02 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T AATCCAGTA26161- T29859A G29862A

EPI_ISL_510467
 2020-04-02 2020-08-06
 Spain hCoV-19/Spain/COV004180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A21556G A23403G GGG28881AAC C29719A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510468
 2020-04-02 2020-08-06
 Spain hCoV-19/Spain/COV004181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510470
 2020-04-02 2020-08-06
 Spain hCoV-19/Spain/COV004183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G G20931T A23403G G25218T G29734C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510471
 2020-04-02 2020-08-06
 Spain hCoV-19/Spain/COV004184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510474
 2020-04-02 2020-08-06
 Spain hCoV-19/Spain/COV004187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A21556G A23403G GGG28881AAC C29719A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_511032
 2020-04-02 2020-08-07
 Portugal hCoV-19/Portugal/PT0773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T A23403G G28975T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511706
 2020-04-02 2020-08-08
 Portugal hCoV-19/Portugal/PT1159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C14408T G23126T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511710
 2020-04-02 2020-08-08
 Portugal hCoV-19/Portugal/PT1163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_514317
 2020-04-02 2020-08-16
 Peru hCoV-19/Peru/INS-058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_515346
 2020-04-02 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0065/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T A23403G G25563T G28655T

EPI_ISL_515523
 2020-04-02 2020-08-19
 Brazil hCoV-19/Brazil/SP-124/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_517687
 2020-04-02 2020-08-24
 Peru hCoV-19/Peru/INS-059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_520729
 2020-04-02 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920638060/2020
 C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_523955
 2020-04-02 2020-08-27
 Brazil hCoV-19/Brazil/SP-128/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C12053T G14028T A14330G C14408T T14498C G14500T A23403G G25088T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_523970
 2020-04-02 2020-08-27
 Brazil hCoV-19/Brazil/SP-171/2020
 ATTAAAGGTTTATACCTTCCCA1- GGT23AAC C241T C3037T A7981G C14408T C17436T A23403G G25088T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_523974
 2020-04-02 2020-08-27
 Brazil hCoV-19/Brazil/SP-178/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C14408T A23403G G25088T GGG28881AAC GGA29861ACC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523980
 2020-04-02 2020-08-27
 Brazil hCoV-19/Brazil/SP-199/2020
 ATTAAAGGTTTATACCTTCCC1- GT24CA C241T C3037T C14408T A23403G G25088T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863G

EPI_ISL_524621
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T A6459G C14408T A16881G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524624
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-12611BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1368C C6990T G11083T C14805T G17140A C18252T C23707T G26144T C26681T G28851T G29402K C29670T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524631
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-12611E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11457C C14408T C17104Y A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524632
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-12612F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29033S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524636
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2648A C3037T C9611Y C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524684
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260F48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1368C T4608C C6990T A8170R G11083T C14805T C23707T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524690
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-12613F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11537G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524711
 2020-04-02 2020-08-28
 United Kingdom hCoV-19/England/LOND-12614DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525648
 2020-04-02 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-36877-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T T3993C C14408T A23403G G25563T G27613T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525649
 2020-04-02 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-36878-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_525650
 2020-04-02 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-36879-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G4255T C4901T C10183T C14408T A20355G A23403G A26530G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526493
 2020-04-02 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G21255C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527015
 2020-04-02 2020-09-03
 Australia hCoV-19/Australia/NSW2431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527408
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-C2673-1/2020
 C241T C1059T C3037T C14408T C19983T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527410
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-C2980-1/2020
 C241T C1059T C3037T C14408T C17172T A17429G A23403G G25563T C28849T C29160T C29370T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527416
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D0459-1/2020
 C241T C1059T C3037T C13568Y C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527431
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1060-1/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T G29736T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527433
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1068/2020
 T25W AC27MM A30M C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527436
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1085-1/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527441
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1493-1/2020
 C241T C1059T C3037T C14408T A17046G C17172T A17429G A23403G G25563T C28849T C29370T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527442
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1657-1/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527446
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1675/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527449
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1773/2020
 C241T C1059T C3037T G8602A T13479C C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527450
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1862/2020
 C241T C1059T C3037T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527451
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1882-1/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527453
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1977/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527454
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1990-1/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527456
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2094/2020
 C241T C1059T C3037T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527458
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2259/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527459
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2282-1/2020
 C241T C1059T C3037T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527465
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2399-1/2020
 C241T C1059T C3037T G8602A C14120T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527468
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2591-1/2020
 C241T C1059T C3037T G8602A C14408T A19298M TT21994YY C21998M C22000M A22003M C22009M AAA22011RWW A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527472
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2674/2020
 C241T C1059T C3037T C14408T C17172T A17429G A19291M A23403G G25563T C28849T C29370T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527474
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2680/2020
 C241T C1059T C3037T C5243M C14408T C17172T A17429G A23403G G25563T C28849T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527477
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D3171/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527478
 2020-04-02 2020-09-02
 United States hCoV-19/USA/CO-CSU-D3376/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528739
 2020-04-02 2020-09-08
 Malaysia hCoV-19/Malaysia/MGI-M32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- G2150T C6312A T7621C G11083T C13730T C23929T C28311T C29614T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_528740
 2020-04-02 2020-09-08
 Malaysia hCoV-19/Malaysia/MGI-M64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T7621C G11083T C13730T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_528741
 2020-04-02 2020-09-08
 Malaysia hCoV-19/Malaysia/MGI-M71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A T7621C G11083T C13730T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_528742
 2020-04-02 2020-09-08
 Malaysia hCoV-19/Malaysia/MGI-M76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C6312A T7621C G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528991
 2020-04-02 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE10007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C5986T A6869W A11439G C14408T A23403G C26542T GGG28881AAC G29701T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_529691
 2020-04-02 2020-09-10
 United Kingdom hCoV-19/Scotland/EDB6845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G3250T C3987T G10097A CC14407TT C17939T C18687T A23403G C23731T G25947T C26456T C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530054
 2020-04-02 2020-09-10
 Spain hCoV-19/Spain/MD-LP51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2205G C3037T C14408T A20055G A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530221 MT997743
 2020-04-02 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T A17858G C18060T C21614T A24694T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_530231
 2020-04-02 2020-09-11
 Australia hCoV-19/Australia/QLD973/2020/P1
 ATTAAAGGTT1- C241T C2416T C3037T C10834T C14408T G19999T A23403G G25563T G28557T

EPI_ISL_530275
 2020-04-02 2020-09-11
 Australia hCoV-19/Australia/QLD1015/2020/P1
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T A29903-

EPI_ISL_534313
 2020-04-02 2020-09-13
 Brazil hCoV-19/Brazil/SP-316/2020
 TAAAGGTTTATACCTTCCCAG3- T25C C241T C3037T C6628T C14408T C21219T A23403G G26690T T27299C GGG28881AAC T29148C C29719T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_534875
 2020-04-02 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T G2164A C3037T C14408T A23403G GGG28881AAC A29884R A29895C

EPI_ISL_534914
 2020-04-02 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3E8A/2020
 C241T C3037T C14408T A23403G G24038T GGG28881AAC

EPI_ISL_534952
 2020-04-02 2020-09-14
 United Kingdom hCoV-19/England/OXON-B43F3/2020
 C241T C3037T C14408T A23403G G24038T GGG28881AAC

EPI_ISL_534978
 2020-04-02 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4821/2020
 C241T C3037T C14408T G22592T A23403G GGG28881AAC

EPI_ISL_537721
 2020-04-02 2020-09-16
 Spain hCoV-19/Spain/CN-CSIC-97006516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T A6502G C14408T G14857T T18990Y A20268G A23403G C25721T C28854T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538151
 2020-04-02 2020-09-16
 Spain hCoV-19/Spain/AN-CSIC-98001776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A2140G C3037T C14408T A20268G A23403G T28600C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_538152
 2020-04-02 2020-09-16
 Spain hCoV-19/Spain/AN-CSIC-98001778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1015G C2710T C3037T C9169T C14408T G16603T A20268G T20497A A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538345
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C3373A C9733T C14408T A23403G G27160R G28580T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538346
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2818/2020
 ATTAAAGGTTT1- C44Y C241T C1059T C3037T C14408T A23403G G25217T G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538347
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538348
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A22320G A23403G G25793T T27299C GGG28881AAC T29148C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538349
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A22320G A23403G G25793T T27299C GGG28881AAC T29148C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538350
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A16438G A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538351
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T G11083T C14805T G26144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538353
 2020-04-02 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11916T C12623Y C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538469
 2020-04-02 2020-09-17
 Singapore hCoV-19/Singapore/936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A C10623T G11083T C13730T T20000G C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538470
 2020-04-02 2020-09-17
 Singapore hCoV-19/Singapore/937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538471
 2020-04-02 2020-09-17
 Singapore hCoV-19/Singapore/564nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C12596T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538472
 2020-04-02 2020-09-17
 Singapore hCoV-19/Singapore/938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8730T C13730T C14408T A23403G G25429T C27416A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538840
 2020-04-02 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA4DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T10453C C11195T C14408T A23403G AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539000
 2020-04-02 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A82B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19680C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539040
 2020-04-02 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8A91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T6515G C16762T C29272T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539065
 2020-04-02 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8BBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C364T C8782T G11230T C23536T T28144C G28167A G28300K G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539098
 2020-04-02 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A87A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T AAAAGATCGCTGAGATTCCTAAAGAGGAAGTTAAGCCATTTATAACTGAAAGTAAACCTT3867- C14408T G15438T A20268G A23403G C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539252
 2020-04-02 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A6248C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539253
 2020-04-02 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003444/2020
 ATTAAAGGTTTA1- C241T C313T C3037T C7318T G8184A C14408T G23009T A23403G G25340A C26907A G28134A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539302
 2020-04-02 2020-09-17
 Belgium hCoV-19/env/Belgium/VWV-92943-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5633T G19072T T19839C T27296A GGG28881AAC ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_539303
 2020-04-02 2020-09-17
 Belgium hCoV-19/env/Belgium/VWV-92949-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1704A C3037T G10097A T11627C G11648T C14618T C15324T T19839C A23403G GCGTTCTTCGGAATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCATATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGCTGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29210-

EPI_ISL_539311
 2020-04-02 2020-09-17
 Netherlands hCoV-19/env/Netherlands/ZH-92965-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9269T C10349T C14408T C17827T A23403G G25459T GGG28881AAC TCAGCGTTCTTCGGAATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCATATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGCTGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29207-

EPI_ISL_541772
 2020-04-02 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286E21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6865K C12073Y C14408T A23403G C25824Y G28048K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541868
 2020-04-02 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr6/2020
 A1- C241T C1059T C3037T C6128T C14408T C20544T A23403G G25563T AAAAAAAAAAAAAA29890-

EPI_ISL_542600
 2020-04-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542611
 2020-04-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542618
 2020-04-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11074T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542796
 2020-04-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542799
 2020-04-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G10096A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542800
 2020-04-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542806
 2020-04-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9166T G12521A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544517
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10840G C13138T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544532
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C7124T C8782T C9561T T18736C C24034T C25433T T26729C C26895T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544538
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6145T C14408T C14786T C21575T A23403G G24077T C29466T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544545
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T A28675G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544579
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4931A C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545880
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545886
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545891
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546834
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546843
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4633T A9737G C10319T C14408T C21575T G22017T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546868
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26013T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546913
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547069
 2020-04-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6032A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548123
 2020-04-02 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20VR2095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C24099T T25303C C28101A GGG28881AAC ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_549009
 2020-04-02 2020-09-28
 Belgium hCoV-19/env/Belgium/VWV-92949-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G702T A23403G ATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29475-

EPI_ISL_549022
 2020-04-02 2020-09-28
 Netherlands hCoV-19/env/Netherlands/ZH-92965-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T15939C C19170T A23403G C28115T GGG28881AAC ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_560595
 2020-04-02 2020-09-29
 France hCoV-19/France/HDF8244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C4320T C14408T C21302T C21304A A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560628
 2020-04-02 2020-09-29
 France hCoV-19/France/GE8795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1659A C3037T G3838T C14408T C15324T A23403G G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560746
 2020-04-02 2020-09-29
 United States hCoV-19/USA/MN-MDH-1659/2020
 ATTAAAG1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_560747
 2020-04-02 2020-09-29
 United States hCoV-19/USA/MN-MDH-1660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_560751
 2020-04-02 2020-09-29
 United States hCoV-19/USA/MN-MDH-1664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_565987
 2020-04-02 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21927/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_568873
 2020-04-02 2020-10-02
 Malaysia hCoV-19/Malaysia/MGI-M23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C6312A T7621C G11083T C13730T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_568909
 2020-04-02 2020-10-02
 France hCoV-19/France/IHU-0641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT300186
 2020-04-02 2020-04-03
 United States SARS-CoV-2/human/USA/UNC_200173/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C26801T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT477850
 2020-04-02 2020-05-14
 United States SARS-CoV-2/human/USA/AK092/2020
 ATTAAAGGTTTATA1- C241T T1978A C3037T C6504T C12781T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT627756
 2020-04-02 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S588/2020
 ATTAAAGGTTTAT1- C8782T A13712G C17747T C17766T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT671826
 2020-04-02 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1773/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C14408T A21436W A23403R G25563T GAGGCCACGCGGAGTACGATCGAGT29734- AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT671827
 2020-04-02 2020-06-26
 United States SARS-CoV-2/human/USA/CA-CZB-1774/2020
 T13C C241T C1059T C3037T C14408T T20799C A23403G G25563T

MT704317
 2020-04-02 2020-07-02
 United States SARS-CoV-2/Panthera tigris/USA/P4_TW_Vero-ATCC/2020
 C241T C1059T C3037T C14408T A23403G C25413T G25563T CTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29803-

MT706206
 2020-04-02 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706207
 2020-04-02 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706208
 2020-04-02 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7945T CC14407TT A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706219
 2020-04-02 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706248
 2020-04-02 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T A12110G G16381A T17877C C20316T G25500T C26192T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810511
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1504-CS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810513
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1506-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810514
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1508-CS1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810516
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1510-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810527
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1661-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810529
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1663-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C7932T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810531
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1665-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810535
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1670-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810536
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1671-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810542
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1677-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810546
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1683-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C2623A C3037T C12473T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810579
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0458-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810612
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1140-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810621
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1151-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810636
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1167-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810637
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1168-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1962T C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810638
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1169-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1568T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810644
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1181-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810645
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1182-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810646
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1183-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C17747T A23403G C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810648
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1185-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810654
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1191-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810941
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0224-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1401A A5405G G8131T C8782T C17747T A17858G C18060T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811185
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0476-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C11671T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811188
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0481-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811196
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0493-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811205
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0503-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A2420C G4105T C8782T C17747T A17858G C18060T A22005G T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811209
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0512-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811374
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0794-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811378
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0799-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G3892T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811392
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0820-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C5467T C8389T C12249T C13487T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811393
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0821-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811395
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0827-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811447
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0981-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811451
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0987-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C11671T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811667
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0153-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G C25006T G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811669
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0155-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T A23403G CGATAC25493- G25563T T27322G C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811670
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0156-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T2845C C3037T G3871T C14408T G17278T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811671
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0157-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T G15372T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811673
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0159-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811695
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0265-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G6362A C7815T C10188T C14408T A23403G T24982C G25563T T26409C C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811699
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0269-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G12988T C14408T C21302T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811707
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0277-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- T469C C1059T C3037T C9319A C10319T C12085T C14408T A23403G C23506T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811721
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0291-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G C23638T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811737
 2020-04-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0307-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C9603T C10319T C11344T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873055
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00043/2020
 ATTAAA1- C241T C2416T C3037T A5725G T8855A C14408T C16887T G20247T A23403G C24096A G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT873153
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00024/2020
 C241T T833C C1059T C3037T C14408T C16616T A23403G G25563T C27964T

MT873161
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00030/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873177
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00040/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873178
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00047/2020
 ATTAAA1- C241T C1059T C3037T A11772G G12038A C14408T C20806T A23403G G25563T

MT873220
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00032/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873254
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00025/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873308
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00023/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873320
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00050/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT873323
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00036/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873398
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00028/2020
 ATTAAA1- C241T C1059T C1917T C3037T C14408T A17047G G20005A A23403G G25563T

MT873404
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00034/2020
 C241T C2416T C3037T C8281T C14408T A22007T A23403G G25563T G26233T

MT873419
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00027/2020
 C241T C2416T C3037T C14408T A23403G G25563T T29452C

MT873429
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00029/2020
 C241T C2416T C3037T C8281T C14408T A22007T A23403G G25563T G26233T

MT873431
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00051/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873438
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00042/2020
 A1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873441
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C657T C1059T C3037T G12038A C14408T A23403G G25563T

MT873480
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00048/2020
 ATTAAA1- C241T C2416T C3037T T6931C C14408T A23403G G24794T G25563T G26233T

MT873487
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00038/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873489
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00039/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873505
 2020-04-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00021/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT877309
 2020-04-02 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T T17901Y C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT877315
 2020-04-02 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6882C C13730T C14408T A23403G G25429T G28079T C29732G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT877320
 2020-04-02 2020-08-12
 United States SARS-CoV-2/human/USA/Yale-277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G C23453T G25563T GGAGTACGATCGAGT29744- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013195
 2020-04-02 2020-06-01
 China hCoV-19/Guangzhou/ID116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_418631
 2020-04-03 2020-03-30
 Belgium hCoV-19/Belgium/ULG-6649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14262T C14408T A23403G G25563T G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_419707
 2020-04-03 2020-04-03
 Spain hCoV-19/Spain/Cataluna201397/2020
 C241T C3037T C14408T A20268G A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_422462
 2020-04-03 2020-04-10
 United States hCoV-19/USA/WI-GMF-00744/2020
 C241T C1059T C3037T A4956G C6363T C9866T C11962T C14408T A14747G A20755C A23403G G25563T

EPI_ISL_423588
 2020-04-03 2020-04-12
 United Kingdom hCoV-19/England/20148006604/2020
 C241T C3037T C14408T T19839C C21648T A23403G C26681T GGG28881AAC

EPI_ISL_424630
 2020-04-03 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10067/2020
 C241T C3037T C7772T C14408T A23403G GGG28881AAC

EPI_ISL_424631
 2020-04-03 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10072/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_424633
 2020-04-03 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10069/2020
 C241T C3037T C11962T C14408T C15324T A23403G T25827C

EPI_ISL_424640
 2020-04-03 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10081/2020
 C241T A618G C3037T G3994A C5694T C14408T C15324T A23403G

EPI_ISL_425147
 2020-04-03 2020-04-14
 United States hCoV-19/USA/WI-UW-90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425157
 2020-04-03 2020-04-14
 United States hCoV-19/USA/WI-UW-100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425160
 2020-04-03 2020-04-14
 United States hCoV-19/USA/WI-UW-103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426160
 2020-04-03 2020-04-15
 United States hCoV-19/USA/WI-GMF-00921/2020
 C241T C1059T C3037T C9866T C14408T A14747G A20755C G22017T A23403G G25563T

EPI_ISL_426472 MT350254
 2020-04-03 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0065/2020
 A1- C241T C313T C3037T C7815T C14408T C18555T A23403G GGG28881AAC C29614T

EPI_ISL_426473 MT350255
 2020-04-03 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0066/2020
 ATTA1- C241T C313T C3037T C7815T C14408T A23403G GGG28881AAC C29614T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_426474 MT350256
 2020-04-03 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0067/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C313T C3037T C7815T C14408T A23403G GGG28881AAC C29614T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_427092 MT451578
 2020-04-03 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC820/2020
 C241T C1059T C3037T C10851T C14183T C14408T A23403G G25563T C29732T

EPI_ISL_427094 MT451580
 2020-04-03 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC823/2020
 C241T C1059T C3037T C10851T C14183T C14408T A23403G G25563T C29732T

EPI_ISL_427095 MT451581
 2020-04-03 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC824/2020
 C241T C1059T C3037T C10851T C14183T C14408T A23403G G25563T

EPI_ISL_427096 MT451582
 2020-04-03 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC828/2020
 C241T C3037T C10755T C12854T C14408T C19813T A23403G C25587T GGG28881AAC G29745T

EPI_ISL_427313
 2020-04-03 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4532V/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_427316
 2020-04-03 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4584S/2020
 C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427317
 2020-04-03 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4585S/2020
 C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427318
 2020-04-03 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4591S/2020
 T52C C117T C228T C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427349
 2020-04-03 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10098/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T A18971G A23403G G25563T T25899C

EPI_ISL_427357
 2020-04-03 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10106/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T

EPI_ISL_427503
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC208/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_427504
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC209/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_427505
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC210/2020
 C8078T G11083T C14805T T17247C G26144T

EPI_ISL_427507
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC212/2020
 C241T C1059T C3037T C14408T G19072T G22203T A23403G G25563T

EPI_ISL_427508
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC213/2020
 C241T C3037T C14408T A23403G G25273T T25815C GGG28881AAC

EPI_ISL_427509
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC214/2020
 C241T C1059T C3037T C14408T C15277T A23403G G25563T C29077T

EPI_ISL_427511
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC216/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_427512
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC217/2020
 C241T C1059T C3037T C11916T C14408T A23403G G24086A G25563T

EPI_ISL_427513
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC218/2020
 C241T C1059T C3037T G6358A C11916T C14408T G17014T C18998T A23403G G25563T G29540A

EPI_ISL_427514
 2020-04-03 2020-04-18
 United States hCoV-19/USA/NY-NYUMC219/2020
 C241T C1059T T1582C C3037T C10015T C11916T C14408T C18744T C18998T A23403G G25563T G29540A

EPI_ISL_427628
 2020-04-03 2020-04-19
 United States hCoV-19/USA/NY-NYUMC228/2020
 C241T C1059T C3037T C3622T C14408T A23403G G25563T C27549T

EPI_ISL_428758
 2020-04-03 2020-04-22
 United States hCoV-19/USA/NY-NYUMC244/2020
 C241T C3037T C14408T C18877T A23403G G25563T GC28968CT

EPI_ISL_428759
 2020-04-03 2020-04-22
 United States hCoV-19/USA/NY-NYUMC245/2020
 C241T C3037T C6198T C14408T C18877T A23403G G25563T

EPI_ISL_428760
 2020-04-03 2020-04-22
 United States hCoV-19/USA/NY-NYUMC246/2020
 C241T C1059T C3037T C6582T C14408T A23403G G25563T

EPI_ISL_428762
 2020-04-03 2020-04-22
 United States hCoV-19/USA/NY-NYUMC248/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_428765
 2020-04-03 2020-04-22
 United States hCoV-19/USA/NY-NYUMC251/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_428766
 2020-04-03 2020-04-22
 United States hCoV-19/USA/NY-NYUMC252/2020
 C241T C1059T C3037T G11527A C11916T C14408T A23403G G25563T

EPI_ISL_428945
 2020-04-03 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS3702558/2020
 C241T C3037T C14408T A23403G G24794T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_428949
 2020-04-03 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS0078676/2020
 C241T C3037T C14408T A23403G G24794T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_428961
 2020-04-03 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS9322962/2020
 C241T C3037T G4255T C13517T C14408T A23403G A26530G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_429018 MT385442
 2020-04-03 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0750/2020
 C241T C1059T C3037T C11916T C13252T C14408T A23403G C23604T G25563T

EPI_ISL_429028 MT385452
 2020-04-03 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0746/2020
 C8782T C17747T A17858G C18060T G20002T T28144C

EPI_ISL_429204
 2020-04-03 2020-04-23
 Switzerland hCoV-19/Switzerland/GE7617/2020
 ATTAAAG1- C241T C3037T C14408T C15324T C16111T A23403G C24844T C29119T

EPI_ISL_429207
 2020-04-03 2020-04-23
 Switzerland hCoV-19/Switzerland/GE1184/2020
 ATTAAAGGTT1- A187G C241T C3037T C14408T C20389T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_429219
 2020-04-03 2020-04-23
 Switzerland hCoV-19/Switzerland/GE2453/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A20268G A23403G C26340T C28854T

EPI_ISL_429980 MT415904
 2020-04-03 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0081/2020
 AT1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T

EPI_ISL_430354
 2020-04-03 2020-04-26
 United States hCoV-19/USA/NY-NYUMC327/2020
 C241T C1059T C3037T C11916T C12473T C14408T G21989T C23230T A23403G G25563T C29109T

EPI_ISL_430357
 2020-04-03 2020-04-26
 United States hCoV-19/USA/NY-NYUMC330/2020
 C241T C3037T C14408T C16393T C16733T G18394T C18754G G23120T A23403G G28357C

EPI_ISL_430467
 2020-04-03 2020-04-27
 India hCoV-19/India/S11/2020
 ATTAAAGGTTTATAC1- C241T C3037T C13730T C14408T A16838C A23403G G27987T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_430533 MT451708
 2020-04-03 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1037/2020
 C241T C3037T C3261T C14408T C20320T A23403G GGG28881AAC G29254T

EPI_ISL_430536 MT451711
 2020-04-03 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1041/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29738T

EPI_ISL_430538 MT451712
 2020-04-03 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1042/2020
 C1076T G1397A G8852A G11083T T22451W C27964T T28688C G29742T

EPI_ISL_430539 MT451713
 2020-04-03 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1043/2020
 C1076T G1397A G11083T T14466K C27964T T28688C G29742T

EPI_ISL_430550 MT451716
 2020-04-03 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1046/2020
 C241T C1059T C3037T C14408T G23311T A23403G G25563T

EPI_ISL_430808
 2020-04-03 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T G25660T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_430974 MT412331
 2020-04-03 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6399/2020
 A1- C36T C241T C1059T C3037T C14408T A23403G G25563T G28881T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_430975 MT412332
 2020-04-03 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6400/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AACC34TTTA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430976 MT412333
 2020-04-03 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C16750T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430979 MT412336
 2020-04-03 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6410/2020
 A4- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_430980 MT412337
 2020-04-03 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-6417/2020
 ATTAAAGG1- ATACCTTCCCAGGTAACAAACC12- C36T C241T C1059T C3037T C6040T C9360T C11036T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_432237
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A03D/2020
 ATTA1- C241T C3037T G10097A C14408T C17678T C21575T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_432294
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29FD7/2020
 AT1- C241T C3037T G9190C C14408T T17126C A20268G A23403G G25494T

EPI_ISL_432343
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29FAA/2020
 C241T C3037T C14408T G21624T A23403G GGG28881AAC

EPI_ISL_432541
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CD2AF/2020
 C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T C27513T GGG28881AAC

EPI_ISL_432836
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C715D/2020
 C241T C3037T C9165T C14408T A23403G GGG28881AAC

EPI_ISL_432850
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C7937/2020
 C241T C3037T C14408T G22427A A23403G G27441T GGG28881AAC

EPI_ISL_433222
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB682/2020
 C12710T C28854T

EPI_ISL_433223
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB689/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433236
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB753/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433238
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB766/2020
 C241T C541T C3037T C14408T C21549T A23403G GGG28881AAC

EPI_ISL_433240
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB773/2020
 C934T A2480G C2558T G11083T C14805T G26144T C27059T

EPI_ISL_433241
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB774/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_433242
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB781/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433243
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB787/2020
 C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T C26461T

EPI_ISL_433245
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB789/2020
 C241T C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_433246
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB795/2020
 C241T C3037T C14408T C21549T A23403G GGG28881AAC

EPI_ISL_433249
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB807/2020
 C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_433600
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433603
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C15017T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433607
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6441G C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433608
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T T5104C C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433614
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C10582T C14408T A23403G G25429T G28808A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433615
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3425T C14408T A20268G A23403G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433666
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73B16/2020
 C241T C3037T C14408T T19839C A23403G C26681T A27044C GGG28881AAC

EPI_ISL_433667
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73B61/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_433668
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73B70/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433669
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73B8F/2020
 C241T C3037T C14408T G22111T A23403G C26028T GGG28881AAC

EPI_ISL_433671
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73BAD/2020
 G160T C241T C3037T C13862T C14408T G16741T T17565C A23403G G26529T C28836T

EPI_ISL_433672
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73BBC/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_433673
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73BCB/2020
 G160T C241T C3037T C13862T C14408T G16741T T17565C A23403G G26529T C28836T

EPI_ISL_433674
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73BDA/2020
 A187G C241T G1944A C3037T C14408T A23403G

EPI_ISL_433720
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78346/2020
 C241T C2940T C3037T C14408T A23403G

EPI_ISL_433722
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78364/2020
 A2480G C2558T G4185A G11083T C14805T G25906T G26144T C29013T

EPI_ISL_433724
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78382/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433748
 2020-04-03 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7856E/2020
 A2480G C2558T G7393T G11083T C14805T C21639T G26144T

EPI_ISL_434063 MT632832
 2020-04-03 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S303/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_434074 MT632932
 2020-04-03 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S314/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28881T

EPI_ISL_434088 MT632872
 2020-04-03 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S328/2020
 G529A G1401A C8782T T13438C C17747T A17858G C18060T T28144C

EPI_ISL_434096 MT632797
 2020-04-03 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S336/2020
 A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29019G A29188T

EPI_ISL_434233
 2020-04-03 2020-04-29
 United States hCoV-19/USA/WA-S473/2020
 C8782T C17747T A17858G C18060T G27870T T28144C

EPI_ISL_434236 MT632985
 2020-04-03 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S476/2020
 C8782T C17747T A17858G C18060T C25886T T28144C

EPI_ISL_434658
 2020-04-03 2020-04-30
 Sweden hCoV-19/Sweden/20-06883/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T G27626A T29161C

EPI_ISL_435023
 2020-04-03 2020-05-01
 United States hCoV-19/USA/TX-HMH440/2020
 C241T C1059T C3037T G9479T C14408T A18082G A23403G G25563T C27964T

EPI_ISL_435024
 2020-04-03 2020-05-01
 United States hCoV-19/USA/TX-HMH441/2020
 C8782T A15246G C17747T A17858G C18060T T28144C

EPI_ISL_435028
 2020-04-03 2020-05-01
 United States hCoV-19/USA/TX-HMH449/2020
 C241T C3037T A6616G G14118T C14408T G15243T A23403G

EPI_ISL_435029
 2020-04-03 2020-05-01
 United States hCoV-19/USA/TX-HMH450/2020
 T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T C25413T T26729C G28077C T28144C C28896G C29451T A29700G

EPI_ISL_435030
 2020-04-03 2020-05-01
 United States hCoV-19/USA/TX-HMH451/2020
 C241T C1059T C3037T C11750T C14408T A23403G G25563T

EPI_ISL_435031
 2020-04-03 2020-05-01
 United States hCoV-19/USA/TX-HMH452/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29688T

EPI_ISL_435461
 2020-04-03 2020-05-05
 United States hCoV-19/USA/LA-SR0158/2020
 C241T C1059T C3037T C12462T C14408T A23403G C24034T G25563T C25703T C27964T

EPI_ISL_435468
 2020-04-03 2020-05-05
 United States hCoV-19/USA/LA-SR0166/2020
 C241T C1059T C3037T C3738T C10319T C14408T A23403G G25563T C27964T G29543T

EPI_ISL_435469
 2020-04-03 2020-05-05
 United States hCoV-19/USA/LA-SR0167/2020
 C241T C1059T C3037T C10319T C14408T G22424T A23403G G25563T C27964T

EPI_ISL_435471
 2020-04-03 2020-05-05
 United States hCoV-19/USA/LA-SR0170/2020
 C241T C1059T C3037T T7562C C14408T C19032T T19527C A23403G G25563T C27964T C28099T

EPI_ISL_436572 MT706386
 2020-04-03 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T C14937T C20148T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436573 MT706387
 2020-04-03 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T C14937T C20148T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436956 MT446356
 2020-04-03 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-088/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_437202
 2020-04-03 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG6/2020
 C241T C14408T G15957T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_437287
 2020-04-03 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0095/2020
 C241T C3037T C14408T A23403G

EPI_ISL_437288
 2020-04-03 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0096/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_437541
 2020-04-03 2020-05-11
 United States hCoV-19/USA/LA-SR0215/2020
 C241T C1059T C3037T C10188T C14408T G18255T A23403G T24982C G25563T G26116T C27964T

EPI_ISL_437542
 2020-04-03 2020-05-11
 United States hCoV-19/USA/LA-SR0214/2020
 C241T C1059T C3037T C10319T C14408T C23202T A23403G G25563T C27964T

EPI_ISL_437656
 2020-04-03 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1498/2020
 C241T C1059T C1191T C3037T C14408T G20679T A23403G G25563T

EPI_ISL_437833 MT461634
 2020-04-03 2020-05-11
 United States SARS-CoV-2/human/USA/ID-UW-6457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- CC36YH C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_437840 MT461640
 2020-04-03 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6480/2020
 AT1- C36T C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_437841 MT461641
 2020-04-03 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C4158T A5011C G14126A C14408T A23403G G25563T

EPI_ISL_437848 MT461646
 2020-04-03 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6491/2020
 AT1- A4H AAC34TTT C241T C1059T C3037T C12880T C14408T A23403G G25563T T25724C G29553A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_437850 MT461647
 2020-04-03 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6497/2020
 ATTAAAGGTTTATACCTTCCCAG1- C36T C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A G29868V C29870A

EPI_ISL_437851 MT461648
 2020-04-03 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6501/2020
 A4- A31T C36T C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_437871 MT461667
 2020-04-03 2020-05-11
 United States SARS-CoV-2/human/USA/CT-UW-6574/2020
 ATTAAAG1- AAC34TTT C241T C1059T C1917T C3037T C14262T C14408T A23403G G25563T A29903-

EPI_ISL_437938
 2020-04-03 2020-05-12
 Austria hCoV-19/Austria/CeMM0058/2020
 C241T C1059T C3037T C14408T G15380T G18255T T22521K A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438829
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C26781T C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438830
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438831
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439671
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB829/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_441005
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D38E0/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_441006
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D38FF/2020
 A1515G C9223T G11083T G13379A C14805T T17247C G26144T

EPI_ISL_441007
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D390B/2020
 C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC G29227T

EPI_ISL_441008
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D391A/2020
 C241T C3037T T13668C C14408T C19488T A23403G GGG28881AAC

EPI_ISL_441009
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3929/2020
 C241T C3037T A9737G C14408T A23403G C24138T G25429T C28737T

EPI_ISL_441010
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3938/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441011
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3947/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_441012
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3956/2020
 C241T C313T C3037T G10105T C14408T A23403G C25904T GGG28881AAC

EPI_ISL_441013
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3965/2020
 C241T C1204T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_441014
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3974/2020
 C241T C913T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441015
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3983/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441111
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/CAMB-78B02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G T25202K G26589C C27128T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_441255
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7A7A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442283
 2020-04-03 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7B783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_443261
 2020-04-03 2020-05-12
 France hCoV-19/France/BFC5011/2020
 C241T C1593T C3037T C9438T C14408T C15324T A19182G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_443265
 2020-04-03 2020-05-12
 France hCoV-19/France/B5310/2020
 C241T C3037T C14408T C15324T C18904T A23403G G25606T C27893T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_443281
 2020-04-03 2020-05-12
 France hCoV-19/France/B5456/2020
 C241T C690T C1059T C2842T C3037T T13006C C14408T A23403G G25563T C25688T G27990A G28378T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_443287
 2020-04-03 2020-05-12
 France hCoV-19/France/IDF5662/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_443288
 2020-04-03 2020-05-12
 France hCoV-19/France/IDF5666/2020
 AC27-T G61T C241T C3037T C14408T C15324T A22404T A23403G G29474T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_443292
 2020-04-03 2020-05-12
 France hCoV-19/France/B5687/2020
 C241T C2416T C3037T G8371T C14408T G18859T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_443293
 2020-04-03 2020-05-12
 France hCoV-19/France/B5688/2020
 C241T C3037T G10396T C14408T C15324T A23403G C27493T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_444613
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC496/2020
 C8078T G10754A G11083T C14805T T17247C G20326A G26144T

EPI_ISL_444615
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC498/2020
 C241T C1059T C2485T C3037T C9724T C14408T A23403G G25563T

EPI_ISL_444707
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC590/2020
 C241T C1059T C1218T G1466T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_444714
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC597/2020
 C241T C619T C1059T C3037T C11074T C14408T A14912G A23403G G25563T

EPI_ISL_444715
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC598/2020
 C241T C1059T C3037T C14408T C22530T A23403G G25563T

EPI_ISL_444716
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC599/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444717
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC600/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_444718
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC601/2020
 C241T C3037T C14408T A23403G A25505C GGG28881AAC G29449T

EPI_ISL_444719
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC602/2020
 C241T C1059T C3037T C4246T C14408T A23403G G25563T

EPI_ISL_444722
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC605/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29013T

EPI_ISL_444723
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC606/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_444757
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC640/2020
 C241T C1059T C3037T C3698T C11916T C14408T A23403G G25563T

EPI_ISL_444758
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC641/2020
 C241T C1059T G1397A C3037T A3559G C11916T C14408T C18998T A23403G T23480G G25563T G29540A

EPI_ISL_444759
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC642/2020
 C241T C1059T C3037T G9190A C11416A C11916T C14408T A23403G G25563T

EPI_ISL_444760
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC643/2020
 C241T C2003T C3037T C5730T C14408T G21606T A23403G GG28882AC G29868A

EPI_ISL_444763
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC646/2020
 C241T C1059T C2488T C3037T C14408T A23403G G25563T A28052G G28221T

EPI_ISL_444766
 2020-04-03 2020-05-14
 United States hCoV-19/USA/NY-NYUMC649/2020
 C241T C1059T C3037T C14408T G18984T A23403G G25563T C28728T

EPI_ISL_444849
 2020-04-03 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1378/2020
 ATG1605- G21724T C28253A

EPI_ISL_444850
 2020-04-03 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1382/2020
 C241T C1059T C1302T C3037T C14408T C19152T A23403G G25563T

EPI_ISL_444852
 2020-04-03 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1386/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_444853
 2020-04-03 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1387/2020
 C241T C1059T C3037T T8788C C14408T G19656T A23403G G25563T G26951A

EPI_ISL_444854
 2020-04-03 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1388/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444855
 2020-04-03 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1390/2020
 C241T AAGTCATTT686- C1059T C1722T C3037T T8788C C14408T G19009T A23403G G25563T G26951A

EPI_ISL_445373
 2020-04-03 2020-05-15
 Chile hCoV-19/Chile/Santiago_76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T A7611R C14408T C18483T A23403G G25690K T27299C GGG28881AAC T29148C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445406
 2020-04-03 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-28B4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC G29395C

EPI_ISL_447064 MT506570
 2020-04-03 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20266/2020
 C241T C1059T C3037T C4582T A5011M C6606T C14408T G18214R A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_447088 MT506573
 2020-04-03 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20291/2020
 C241T G960R C1059T C3037T C4202T C11941T C14408T A23403G G25563T

EPI_ISL_447104 MT506572
 2020-04-03 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20307/2020
 C241T C1059T C3037T C4582T A5011M C6606T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_447426
 2020-04-03 2020-05-17
 Israel hCoV-19/Israel/13077726/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T C25889T C26078T AACGAACATG27387- AAAAAAAAAAAA29892-

EPI_ISL_447432
 2020-04-03 2020-05-17
 Israel hCoV-19/Israel/13077558/2020
 C241T C2416T C3037T C14408T A23403G G25563T G25855T AAAAAAAAAAAA29892-

EPI_ISL_447435
 2020-04-03 2020-05-17
 Israel hCoV-19/Israel/13077498/2020
 C241T C1059T C3037T C9893T C14408T A20755C A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447438
 2020-04-03 2020-05-17
 Israel hCoV-19/Israel/13077413/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447786
 2020-04-03 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93534/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_447789
 2020-04-03 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T T12094C C14408T T19839C T23255C A23403G GGG28881AAC C28937T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447790
 2020-04-03 2020-05-18
 Colombia hCoV-19/Colombia/GVI-93538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T G3323T C14408T A23403G T24238G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447791
 2020-04-03 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C14408T A23403G G25563T GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_447792
 2020-04-03 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- C241T A2761T C3037T C11753T C14408T C18877T C21998A A23403G G25563T C26028T AAA29901-

EPI_ISL_447793
 2020-04-03 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T A23403G G25563T AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_447794
 2020-04-03 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T G13240A C14408T A23403G G25297A GGG28881AAC AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_447893 MT481933
 2020-04-03 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1142/2020
 ATTAAAGGTT1- C241T C1059T C3037T C9561T C14408T C17410A A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_450400
 2020-04-03 2020-05-21
 United States hCoV-19/USA/NY-NYUMC683/2020
 C241T C3037T C14408T C18877T A23403G G25563T G28881A GC28968CT

EPI_ISL_450804 MT507280
 2020-04-03 2020-05-22
 United States SARS-CoV-2/human/USA/VI-CDC-3810/2020
 C241T C3037T G11083T C14408T T15264C A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451168
 2020-04-03 2020-05-23
 Belgium hCoV-19/Belgium/UGent-57/2020
 C241T C3037T C14408T C15324T C20405A A23403G C25433T ATC27038TAA

EPI_ISL_451974 MT511069
 2020-04-03 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P13/2020
 C241T C541T A544G C3037T G4180T T7767C C11704T C14408T G19254T A23403G

EPI_ISL_451977 MT511072
 2020-04-03 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P16/2020
 C241T C3037T C7081T C13072T C14408T C19836T A23403G C29870M

EPI_ISL_452140
 2020-04-03 2020-05-26
 Belgium hCoV-19/Belgium/20A42/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_452190
 2020-04-03 2020-05-27
 Italy hCoV-19/Italy/VR_20COV46-8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C48A A187G C241T C3037T C14408T C14889T A23403G C25658T A26166T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452191
 2020-04-03 2020-05-27
 Italy hCoV-19/Italy/VR_20COV46-23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- A187G C241T C3037T C14408T C14576T C14889T A23403G C25658T A26166T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_452797 MT558648
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0219/2020
 ATT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_452798 MT558649
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0220/2020
 ATTAAAGG1- C241T C3037T T9172C A10948G C14408T G15380T A23403G G26730T C28432T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_452799 MT558650
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0221/2020
 ATTAAAGGTTTA1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC

EPI_ISL_452800 MT558651
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0223/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C11747T C14408T C18877T A23403G G25459T G25555T G25563T G28086T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_452801 MT558652
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0224/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T C18877T A23403G G25459T G25555T G25563T G28086T A29869G

EPI_ISL_452802 MT558653
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0225/2020
 ATTAAAGG1- C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_452803 MT558654
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G16158T C18877T A23403G G25459T G25555T G25563T G28086T G29868A C29870A

EPI_ISL_452804 MT558655
 2020-04-03 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0227/2020
 ATT1- C241T C1059T C3037T C14408T A18015G A23403G G25563T

EPI_ISL_453967
 2020-04-03 2020-05-28
 Portugal hCoV-19/Portugal/PT0253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4832T C14408T A23403G GGG28881AAC C29205T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453969
 2020-04-03 2020-05-28
 Portugal hCoV-19/Portugal/PT0255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T G11417T C14408T A23403G G24077T T28705C C29555T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_453970
 2020-04-03 2020-05-28
 Portugal hCoV-19/Portugal/PT0256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453972
 2020-04-03 2020-05-28
 Portugal hCoV-19/Portugal/PT0258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453975
 2020-04-03 2020-05-28
 Portugal hCoV-19/Portugal/PT0261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T C14408T A23403G G23856T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_453976
 2020-04-03 2020-05-28
 Portugal hCoV-19/Portugal/PT0262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G G23856T GGG28881AAC GTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29688-

EPI_ISL_454317
 2020-04-03 2020-05-28
 Portugal hCoV-19/Portugal/PT0594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T721C C3037T C4784T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454778
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10029/2020
 ATTAAA1- C241T C1594T C3037T C11109T C14408T A23403G G25563T AAAAAA29898-

EPI_ISL_455120
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C10755T C14805T G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455132
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455133
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455134
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455198
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C4456T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455199
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455200
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C12786T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455227
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455251
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T G15982T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455266
 2020-04-03 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455617 MT536184
 2020-04-03 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C8730T C14408T G19542T A23403G G25563T C27964T G29781T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455645
 2020-04-03 2020-06-01
 India hCoV-19/India/S15/2020
 C7945T C8782T G22468T T28144C G28878A G29742A

EPI_ISL_455646
 2020-04-03 2020-06-01
 India hCoV-19/India/S16/2020
 C241T C3037T C14408T T15132C A23403G G28221T C28383T

EPI_ISL_455976
 2020-04-03 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10188/2020
 C241T C3037T G4255T T13830C C14408T C16192T G18756T A23403G A26530G C29635T

EPI_ISL_456079
 2020-04-03 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20436T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456083
 2020-04-03 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18570T G21608T A23403G T27299C G28347A GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456309
 2020-04-03 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1924/2020
 C241T C3037T C6723T C14408T A23403G T26094C

EPI_ISL_456314
 2020-04-03 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1933/2020
 C241T C1059T C3037T C14408T C16260T C17352T A23403G G25563T C28821A

EPI_ISL_457018
 2020-04-03 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB805/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_457019
 2020-04-03 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB808/2020
 C241T C3037T C14408T A23403G C25433T C27903T

EPI_ISL_457020
 2020-04-03 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB816/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_457054
 2020-04-03 2020-06-02
 United Kingdom hCoV-19/England/EXET-1353DB/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457166
 2020-04-03 2020-06-02
 United Kingdom hCoV-19/England/EXET-135DBF/2020
 G1440A G2891A C4668T T5521C C7815T A11144C

EPI_ISL_457868
 2020-04-03 2020-06-02
 Kenya hCoV-19/Kenya/P169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17523T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_457981
 2020-04-03 2020-06-02
 Oman hCoV-19/Oman/205026358/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C3037T C8832T G10265A C14408T C16293T C19269T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_458069
 2020-04-03 2020-06-03
 India hCoV-19/India/CCMB_O4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G1820A C6310A C6312A G11083T C13730T C19524T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458080
 2020-04-03 2020-06-03
 India hCoV-19/India/CCMB_J300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458084
 2020-04-03 2020-06-03
 Italy hCoV-19/ITALY/SardiniaNuoro04039046/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A13703G C14408T A23403G C27046T GGG28881AAC TTCTTAGGAGAATGA29855- A29891G A29902C

EPI_ISL_458138
 2020-04-03 2020-06-03
 Brazil hCoV-19/Brazil/AP162741-IEC/2020
 C241T C3037T C10778T C14408T A23403G C23683T T27299C GGG28881AAC T29148C

EPI_ISL_458240
 2020-04-03 2020-06-04
 United States hCoV-19/USA/CA-SR0355/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_458261
 2020-04-03 2020-06-04
 United States hCoV-19/USA/CA-SR0381/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_460135 MT520210
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_460217 MT520292
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00659/2020
 ATTAAAGGTTTATACC1- C241T C2416T C3037T T10216C C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460248 MT520323
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460256 MT520331
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00657/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C5886T C14408T A23403G G25563T T29036G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460327 MT520402
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00639/2020
 ATTAAA1- G105T C241T C3037T C10582T A11537G C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460377 MT520452
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T T26102C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460402 MT520477
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00658/2020
 ATTAAAGGT1- C241T C1059T C3037T C10335T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460412 MT520487
 2020-04-03 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00637/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G C24023T C24921T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460651
 2020-04-03 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C12073T C14408T C16049T A23403G G25563T A27440C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460652
 2020-04-03 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T T13006C C14408T C17474T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460705
 2020-04-03 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T G15982T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460941
 2020-04-03 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9438T G12550A C14408T A20268G C20740A A23403G G26501T G27598C TT27760AC C29095T G29690T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461129
 2020-04-03 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C C25276T G26144T G29690T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461265
 2020-04-03 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1415T C3037T C14408T A23403G G23624T A24862G A27674T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461339
 2020-04-03 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T C16394T A20531C A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461412 MT683388
 2020-04-03 2020-06-06
 United States SARS-CoV-2/human/USA/CT-UW-6587/2020
 ATTA1- AAC34TTT C241T C3037T C14408T C18877T A22503T A23403G G25563T C26313T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_461414 MT683389
 2020-04-03 2020-06-06
 United States SARS-CoV-2/human/USA/CT-UW-6590/2020
 ATTAAAGGTTTATACCTTCCCA1- AACC34TTTH C241T C1059T C3037T C14408T C20402T A23403G G25563T A27994G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_461416 MT683390
 2020-04-03 2020-06-06
 United States SARS-CoV-2/human/USA/CT-UW-6592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_461420 MT683392
 2020-04-03 2020-06-06
 United States SARS-CoV-2/human/USA/CT-UW-6603/2020
 ATTAAAG1- AAC34TTT C241T C1059T C3037T C11916T C14408T C18998T G19872A A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_461762
 2020-04-03 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB817/2020
 C241T C3037T C14408T G19891T A23403G C25433T

EPI_ISL_462235
 2020-04-03 2020-06-08
 Belgium hCoV-19/Belgium/DEJ-0403381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462236
 2020-04-03 2020-06-08
 Belgium hCoV-19/Belgium/LA-0403382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C23191T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462355
 2020-04-03 2020-06-08
 Singapore hCoV-19/Singapore/237/2020
 C6310A C6312A G11083T C13730T C19524T T21442C C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_463284 MT585089
 2020-04-03 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-036/2020
 C241T C1059T C3037T C14408T C22998T A23403G G25563T C27964T G28899A

EPI_ISL_463288 MT585093
 2020-04-03 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-040/2020
 C241T C1059T C3037T C6070T C10319T C14408T A23403G G25563T G25599T C27964T

EPI_ISL_463297 MT585102
 2020-04-03 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-049/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463929
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/QC_AQ5/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_463942
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/QC_AT7/2020
 C241T C1059T C1150T C1223T C3037T C4886T C14408T G14829T A23403G A24782G G25563T G27561T C27964T

EPI_ISL_463946
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/QC_AU7/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_464018
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0038/2020
 C241T C1059T C3037T C14408T G14653T C17339T A23403G G25563T G28368A

EPI_ISL_464024
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0058/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28302C G28368A

EPI_ISL_464028
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0037/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_464037
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0041/2020
 C241T C1059T C1943T C3037T G11083T C14408T A23403G G25563T G28368A

EPI_ISL_464063
 2020-04-03 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0051/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29769T

EPI_ISL_464084
 2020-04-03 2020-06-11
 Belgium hCoV-19/Belgium/rega-0403290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24794T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464145
 2020-04-03 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC CTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29784-

EPI_ISL_464146
 2020-04-03 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_35/2020
 C241T T8022G C14408T A23403G AG24389CC GGG28881AAC

EPI_ISL_464147
 2020-04-03 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_36/2020
 C241T C14408T T20891G A23403G GGG28881AAC

EPI_ISL_465499
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20188020404/2020
 C241T C3037T A5855G C14408T C18110T C18115T A23403G GGG28881AAC

EPI_ISL_466076
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20148067204/2020
 C241T C3037T C14408T C18568T A23403G G24348T G25912T GGG28881AAC

EPI_ISL_466089
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149003004/2020
 C241T C1101T C3037T C3373A C11195T C14408T C15216T A23403G G25203T GGG28881AAC

EPI_ISL_466090
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149003104/2020
 C241T C1101T C3037T C3373A C11195T C14408T C15216T A23403G GG25203TS GGG28881AAC

EPI_ISL_466092
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149003304/2020
 C583T A700G A2480G C2558T C7279T G11083T C14805T A15405G G26144T C27331T

EPI_ISL_466103
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149004804/2020
 C241T C3037T C8025T C14408T A20268G A23403G G29734C

EPI_ISL_466152
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149012004/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_466156
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149013504/2020
 C241T C3037T C14408T C23086T A23403G A27237G GGG28881AAC GA29868SW

EPI_ISL_466157
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149013604/2020
 C241T C3037T C14408T C23086T A23403G A27237G GGG28881AAC

EPI_ISL_466158
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149013704/2020
 C241T C3037T C14408T C23086T A23403G A27237G GGG28881AAC

EPI_ISL_466162
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149021404/2020
 A2480G C2558T C7011T G11405A C14805T C19895T AC22285MY G26144T C28869T G29779T

EPI_ISL_466163
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149021704/2020
 A2480G C2558T C5526T G6961K C7011T T9028W G11083T G11405A C14805T C19895T G26144T C26527S C28869T G29779T

EPI_ISL_466166
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149022204/2020
 A2480G C2558T C7011T G11405A G14512T C14805T C19895T G26144T T27484C C28869T G29779T

EPI_ISL_466169
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149022504/2020
 A2480G C2558T C7011T G11083T G11405A C14805T C19895T G26144T C28869T G29779T

EPI_ISL_466176
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149025404/2020
 A2480G C2558T C7011T G11083T G11405A C14805T C19895T G26144T C28869T G29779T

EPI_ISL_466178
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149026204/2020
 C241T C313T C3037T C14408T A23403G G27382T GGG28881AAC

EPI_ISL_466180
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149027404/2020
 A2480G C2558T C7011T G11083T G11405A C14805T A19338R C19895T T22389C G26144T C28869T G29779T

EPI_ISL_466186
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149035304/2020
 A1515G G4510T C9223T A10912G G11083T C14805T T17247C G20931T G26144T A27241R

EPI_ISL_466199
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149044504/2020
 C241T C3037T C4784Y C14408T A23403G C25149Y G25429K GTTCTA28090- GGG28881AAC

EPI_ISL_466200
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20149045004/2020
 C241T C1710T C3037T C5575T C14408T G19296K T19299Y A23403G GTTCTA28090- GGG28881AAC

EPI_ISL_466234
 2020-04-03 2020-06-11
 United Kingdom hCoV-19/England/20152047704/2020
 A2480G C2558T C7011T G11083T G11405A C14805T G26144T C27199Y C28869T

EPI_ISL_467194
 2020-04-03 2020-06-12
 Spain hCoV-19/Spain/COV003719/2020
 C8782T C13115T T25541C C26088T T28144C

EPI_ISL_467238
 2020-04-03 2020-06-12
 Spain hCoV-19/Spain/COV003716/2020
 C241T C1282T C3037T T4051K C14408T A20268G A22924G A23403G C27476Y C27661Y

EPI_ISL_467241
 2020-04-03 2020-06-12
 Spain hCoV-19/Spain/COV003717/2020
 C241T C3037T G13948T C14408T A20268G A23403G A24221G

EPI_ISL_467381
 2020-04-03 2020-06-13
 United States hCoV-19/USA/NY-NYUMC888/2020
 C241T C1059T C3037T A4360C C14408T A23403G G25563T

EPI_ISL_467433
 2020-04-03 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_467450
 2020-04-03 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0066/2020
 C241T C3037T C14408T C16376T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_467451
 2020-04-03 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0067/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_467469
 2020-04-03 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0116/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C16376T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_467653
 2020-04-03 2020-06-14
 United States hCoV-19/USA/NM-UNM-00142/2020
 C241T C1059T C3037T C11095A C14408T A23403G G25563T A26267G

EPI_ISL_467654
 2020-04-03 2020-06-14
 United States hCoV-19/USA/NM-UNM-00143/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468024
 2020-04-03 2020-06-16
 Australia hCoV-19/Australia/SAP226/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G28908T

EPI_ISL_468414 MT628149
 2020-04-03 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C379A C1059T C3037T C7735Y C14408T C15738Y T18648W A23403G G25012A G25563T C27625Y ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_468532 MT628255
 2020-04-03 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1603/2020
 ATTAAAGGTTTATACCT1- C4776T C8782T T13914C C17104T C17747T A17858G C18060T G28086T T28144C

EPI_ISL_468533 MT628256
 2020-04-03 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1604/2020
 A2389G C4776T C8782T C17747Y A17858G C18060T G28086K T28144C AAAAAAAAAAAAA29891-

EPI_ISL_468647 MT631837
 2020-04-03 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1721/2020
 ATTAA1- C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_468650 MT631840
 2020-04-03 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1727/2020
 ATT1- C241T C379A C1059T C3037T C14408T A20374G A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_468712
 2020-04-03 2020-06-17
 United States hCoV-19/USA/LA-BIE-022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469051
 2020-04-03 2020-06-17
 Morocco hCoV-19/Morocco/Mor-CoV-3/2020
 C241T C1684T C3037T G6404T C8208T C14408T C15324T G22363T A23403G C29362T

EPI_ISL_469293
 2020-04-03 2020-06-18
 Japan hCoV-19/Japan/Donner35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C313T C823T C3037T C14408T G23401T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470831
 2020-04-03 2020-06-19
 Australia hCoV-19/Australia/WA13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T G675S C1059T C3037T T4341Y C5365Y A5466W C14408T C21781T A23403G G25563T C29415T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471240
 2020-04-03 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471542
 2020-04-03 2020-06-22
 Brazil hCoV-19/Brazil/SP-127/2020
 T25G C241T C3037T C14408T T14501C G18898T A23403G G25088T GGG28881AAC CTT29857TCG GGA29861TCT AAAAAAAAAAAAA29891-

EPI_ISL_473779
 2020-04-03 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3839/2020
 C241T C3037T C10798A C13862T C14408T C22000T A23403G C28836T

EPI_ISL_474810
 2020-04-03 2020-06-23
 Spain hCoV-19/Spain/Albacete-COV003777/2020
 C241T C3037T T10415A C10650T C14408T A20268G A23403G C28708T

EPI_ISL_475644
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC33/2020
 T42A C241T C1059T C1288T C3037T A3780G C14408T A23403G G25563T

EPI_ISL_475645
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC34/2020
 C6286T C8782T A9634T C17010T C17747T A17858G C18060T C20234T T25451C T28144C C29367G

EPI_ISL_475647
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC36/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_475648
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC37/2020
 C241T C1059T C3037T C14408T G15908A A23403G G25563T

EPI_ISL_475649
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC38/2020
 C241T A2784T C3037T T9401C T9403A T13474C C14408T TA19519- C22097T A23403G T24903C G25563T A27997T

EPI_ISL_475650
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC39/2020
 C241T C379A C1059T C3037T C5654T C11824T C14408T C14554T A23403G G25563T

EPI_ISL_475652
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC40/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T T28688G

EPI_ISL_475686
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC71/2020
 T490A G922A C3177T C8782T C10207T C15738T T18736C A22003G C24034T T26729C G28077C T28144C A29700G

EPI_ISL_475690
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC75/2020
 C241T G2035T C3037T C4777T C14408T T14658C T15264C A23403G

EPI_ISL_475691
 2020-04-03 2020-06-23
 United States hCoV-19/USA/CA-CSMC76/2020
 C241T C3037T G11083T C14408T C14786T G17572T C21233T A23403G GGG28881AAC

EPI_ISL_475800
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3250T G11083T C14408T A23403G A24862G C28657T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475801
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475804
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21304A G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475805
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C21304A G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475828
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677K A23403G T27384Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475895
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475896
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4290M C6336T C8318A C14408T G15589R C17304Y T18892Y T19985Y A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475929
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475935
 2020-04-03 2020-06-25
 Austria hCoV-19/Austria/CeMM0637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2396M T2703Y C3037T C14408T C15324T A22259G A23403G T25569Y G29759T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476511
 2020-04-03 2020-06-25
 Canada hCoV-19/Canada/QC_AQ3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476512
 2020-04-03 2020-06-25
 Canada hCoV-19/Canada/QC_AR2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1387T C3037T C14408T A20755C C20936T A23403G G25563T C28717T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477197
 2020-04-03 2020-06-29
 Italy hCoV-19/Italy/IZSPB_3725/2020
 A1CCGACCGGA C241T C3037T A3942T A10948G C14408T A23403G G27827T GGG28881AAC A29881C A29883C AAAAA29885TGGGG AAAAAAAAAAAAA29891T

EPI_ISL_477822
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR1509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C15017T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478440
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6E63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C14408T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478441
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6E72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478443
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6EBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T A11839G C14408T C16575T T19839C A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478444
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6F42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G18255T C20428T C22088T G26144T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478445
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6F60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18395T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478450
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6FD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478451
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D6FF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1483A A2480G C2558T G11083T C14805T G26144T C27600T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478452
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D7002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11365T C14408T A23403G G26372T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478453
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D7011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478454
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D703F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478455
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D704E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478456
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D705D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G G27882A GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478457
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D706C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G5578A C9666T G11083T C14805T T17247C G26144T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478458
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/LOND-D707B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13517T C14408T A23403G C26534T GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478520
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-283BF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11530T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478521
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-283CD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T15297C G21157A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478522
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-283CE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C20270T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478645
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-2959F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20663T A23403G T27222C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478648
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-295AA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478652
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-295B76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478655
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-295BD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C9430T G11083T G11266A C14805T G26144T C26456T G29751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478657
 2020-04-03 2020-06-30
 United Kingdom hCoV-19/England/NORT-295BFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G8258A G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479759
 2020-04-03 2020-07-01
 United States hCoV-19/USA/FL-Miami-04_UMTL-95QV/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C4931T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480072
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T G17427T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480082
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_480141
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C313T C3037T C14408T A23403G G25879T GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480142
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G26730A GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_480143
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480159
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C11074T G11083T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480173
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T C3037T C3429T G4300T C14408T A23403G G25249T G25563C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480183
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C9979T C14408T A23403G T26486C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480187
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480197
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C14408T A20268G A23403G TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480222
 2020-04-03 2020-07-01
 Japan hCoV-19/Japan/PG-0590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C1059T C3037T C14184T C14408T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480815 MT703982
 2020-04-03 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0164/2020
 ATT1- C241T C1059T C3037T C14408T C19170T A23403G G25471C G25563T T27384C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_480817 MT703984
 2020-04-03 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0166/2020
 AT1- C241T C1059T C3037T C14408T C19983T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480818 MT703985
 2020-04-03 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0167/2020
 AT1- C241T T833C C1059T C3037T C14408T C17285T A23403G G25563T C27964T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_481272 MT704126
 2020-04-03 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C T27553G G28077C T28144C C28896G A29700G A29731T C29739A T29748G T29753G C29774T A29776T AG29780CC G29862C -29866G

EPI_ISL_481664
 2020-04-03 2020-07-03
 Finland hCoV-19/Finland/3A19S9/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481665
 2020-04-03 2020-07-03
 Finland hCoV-19/Finland/3A21S9/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481666
 2020-04-03 2020-07-03
 Finland hCoV-19/Finland/3A26S9/2020
 C241T C1059T C2470T C3037T C14408T A23403G G24368T G25563T C29466T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481667
 2020-04-03 2020-07-03
 Finland hCoV-19/Finland/3A47S9/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481668
 2020-04-03 2020-07-03
 Finland hCoV-19/Finland/3A56S9/2020
 C241T C1059T C2507T C3037T C14408T C15026T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481750
 2020-04-03 2020-07-03
 Canada hCoV-19/Canada/NB_257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C23929T C28311T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482294
 2020-04-03 2020-07-03
 United States hCoV-19/USA/OR-PROV-003/2020
 C241T C1059T C1457T C3037T C14408T A23403G G25302T G25563T

EPI_ISL_482302
 2020-04-03 2020-07-03
 United States hCoV-19/USA/OR-PROV-015/2020
 C32T G2944A A4236G G11083T C12778T C14805T T25655C G26144T

EPI_ISL_482303
 2020-04-03 2020-07-03
 United States hCoV-19/USA/OR-PROV-016/2020
 G11083T C14805T G26144T C29614T

EPI_ISL_482304
 2020-04-03 2020-07-03
 United States hCoV-19/USA/OR-PROV-017/2020
 C241T C1059T C3037T T3312C C14408T A23403G G25563T

EPI_ISL_482448
 2020-04-03 2020-07-03
 United States hCoV-19/USA/OR-PROV-206/2020
 C241T C3037T C13665A C14408T A23403G GGG28881AAC

EPI_ISL_482744 MT704812
 2020-04-03 2020-07-03
 Serbia SARS-CoV-2/human/SRB/UE92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A G11083T C11833A C13536T C14408T A23403G C23731T G26529T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483382
 2020-04-03 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0822-SAN/2020
 ATTA1- C241T C1059T C1887T C3037T C14408T G22205C A23403G G25563T A29558G

EPI_ISL_483587
 2020-04-03 2020-07-08
 Singapore hCoV-19/Singapore/564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C6310A C6312A G11083T C12596T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483589
 2020-04-03 2020-07-08
 Singapore hCoV-19/Singapore/566/2020
 ATTAAAGGTTTATACCTTCC1- C6310A C6312A C9870T G11083T C13730T G18653R C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483612
 2020-04-03 2020-07-08
 Singapore hCoV-19/Singapore/589/2020
 ATTAAAGGTTTATACCTTCC1- C955T C6310A C6312A G11083T C13730T C19524T C23929T G26062T C28311T C28758T AAAAAAAAAAAA29892-

EPI_ISL_483714
 2020-04-03 2020-07-08
 Israel hCoV-19/Israel/n14287/2020
 C241T C313T AA2473- C3037T C14408T G17808T A20531- A23403G GGG28881AAC

EPI_ISL_484796
 2020-04-03 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S001040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6638T C14408T A23403G C23613T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486288
 2020-04-03 2020-07-10
 United States hCoV-19/USA/CA-CZB-2044/2020
 ATTA1- C241T C1059T C3037T C7528T C14408T G20238K A22904M A23122V A23403G G25563T T25902W T25908W G25913S G27261T

EPI_ISL_487724
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- TTA516- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487808
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C5183T C10798A C13862T C14408T A23403G C28836T A29031R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487851
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21305A T21861C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487897
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487966
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487968
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C8660M C14408T C16289T A23403G G23426T G25429T C27800T C28932Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488187
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F9F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T T5840C C14408T C15222T T15501A G20578T A23403G G25563T C26681Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488193
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FA39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1670Y C3037T C14408T G16864T A23403G C23758Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488251
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FA48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18464T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488261
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FAA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A18077G C19170T G19509A C22000T G22103C A23403G C28585T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488268
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F9C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T G21295K A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488293
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FA0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541M C683Y C3037T C9286T G10097A C14408T A23403G C23731T C28253Y G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488315
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FA2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2706T A7025G C9724T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488341
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FA57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17249T G17722T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488347
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FB18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488389
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FAC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1570C A2205G C3037T T3493C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488390
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FAFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T G10255T C14408T G21082S A21085M T21087C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488392
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FB09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4897T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488419
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FA1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488432
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F9D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G10180T C14408T A23403G C23731T G28580T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488439
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FA66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488457
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295A3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18859T A21137G G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488489
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295B94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5284T C13862T C14408T A23403G T25202K G28396T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488502
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-283B4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C3037T C14408T A20465R A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488504
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-283B3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- A2916T G4720T G17193A C23664T C25810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488567
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295CDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T3909C G6373T G11083T C14805T C21789T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488586
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-283BA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G T25202K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488592
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295B49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T A11600G C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488595
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295B58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T A11600G C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488598
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295A5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488610
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295B3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C1912T C3037T A11600G C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488629
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295B85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T25202K C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488634
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295BA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2869G C3037T C14408T G16487K A23403G T25202K T27722Y C27964Y GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488698
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295B2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T A11600G C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488710
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-295B67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488742
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-283D57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24535T G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488827
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-283BE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026Y T7087Y G10097A C14408T A23403G C23731T C24026T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488835
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-283C2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14994G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488879
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488889
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13458T C14408T T21861C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488891
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488910
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T C21627Y A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488920
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C7945T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488929
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9223T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488932
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488938
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488948
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21861C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488949
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4904T C14408T C16289T A23403G G25429T A26579T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488956
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488979
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4956R C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488982
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12400T C14408T A23403G T25436C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488992
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A361G C3037T C11775T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488993
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C8146T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489001
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489004
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489005
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3880T C14408T T17126C A20268G G21372T A23403G G24197A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489008
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3425T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489032
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6578T C14408T C18348T A23403G AAATTG26096- C26882T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489038
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4476A G9224A C11514T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489050
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5646T C10632T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489052
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12400T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489061
 2020-04-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491128
 2020-04-03 2020-07-16
 Oman hCoV-19/Oman/8600/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G10265A C14408T C16293T A23403G GGG28881AAC -29861T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_491481
 2020-04-03 2020-07-17
 United States hCoV-19/USA/COM0001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083T C14408T C16349T C21110T A23403G G25563T C27964T C28846T G29781C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491922 MT776416
 2020-04-03 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G28086T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492187
 2020-04-03 2020-07-20
 United Kingdom hCoV-19/England/BRIS-132848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T CT14408TC A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492213
 2020-04-03 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T3931C G11083T C14805T G26144T G28857T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492242
 2020-04-03 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18532FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4073T C6026T C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492869
 2020-04-03 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A9744G G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493128
 2020-04-03 2020-07-20
 United States hCoV-19/USA/WY-WYPHL-20007680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T A26855G

EPI_ISL_493742
 2020-04-03 2020-07-21
 United Kingdom hCoV-19/Scotland/CVR1513/2020
 A1- C241T C3037T C14408T C22879A A23403G

EPI_ISL_494372
 2020-04-03 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T A3337G C5241T C14408T A23403G C25350T C25566T

EPI_ISL_494373
 2020-04-03 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494374
 2020-04-03 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C4540T G4904T G5206T C14408T A19073G A23403G C24138T C25350T G28179T

EPI_ISL_494378
 2020-04-03 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494379
 2020-04-03 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1127/2020
 ATTAAAGGT1- C241T C3037T C4540T G4904T G5206T C14408T C17172T A23403G C24138T C25350T

EPI_ISL_494668
 2020-04-03 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C1887T A2205C C3037T C14408T C21575T A23403G G25563T C28708T

EPI_ISL_495598
 2020-04-03 2020-07-23
 United States hCoV-19/USA/MN-MDH-1299/2020
 ATTA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_498167
 2020-04-03 2020-07-27
 Colombia hCoV-19/Colombia/96791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499272
 2020-04-03 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1D2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5340T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499274
 2020-04-03 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1D4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T T6556G C9474T C9870T G11083T C14805T G26144T C26892T CACCGAGGCCACGCGGAGTACGATCGAGTG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499366
 2020-04-03 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168F08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6990T G10870K C14408T A23403G C29200T C29870M

EPI_ISL_499384
 2020-04-03 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6990T C14408T A23403G G25650K C29200T A29903-

EPI_ISL_507026 MT820484
 2020-04-03 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C18877T A23403G G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507031 MT820489
 2020-04-03 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC70/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C18877T A23403G G25563T C25889T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507081
 2020-04-03 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D2EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C19488T A23403G GGG28881AAC G29543T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_507134
 2020-04-03 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D1BE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507161
 2020-04-03 2020-08-03
 United Kingdom hCoV-19/England/SHEF-C2389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507163
 2020-04-03 2020-08-03
 United Kingdom hCoV-19/England/SHEF-C433C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507607
 2020-04-03 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G578A C1059T C1670T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507608
 2020-04-03 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T C28887Y ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507611
 2020-04-03 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507616
 2020-04-03 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10198T C10908T C11916T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_507622
 2020-04-03 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21368/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T C14408T C15194T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_507623
 2020-04-03 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21369/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T C20436T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_507885
 2020-04-03 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1059T T1417A C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508128
 2020-04-03 2020-08-04
 Australia hCoV-19/Australia/SAP437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C4710T C14408T A23403G G23856A T25473C T27233C GGG28881AAC

EPI_ISL_508385
 2020-04-03 2020-08-04
 India hCoV-19/India/IK6/2020
 C7945T C8782T G22468T G22487C T28144C G28878A G29742A G29868A

EPI_ISL_508394
 2020-04-03 2020-08-04
 India hCoV-19/India/IK7/2020
 ATTAAAGGTTTA1- C7945T C8782T G22468T G27008T G27077T T28144C G28878A G29742A G29868A

EPI_ISL_508974
 2020-04-03 2020-08-04
 France hCoV-19/France/ARA18783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATG1- C241T C3037T C14408T C15324T A23403G C25904T T26504C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_508977
 2020-04-03 2020-08-04
 France hCoV-19/France/ARA19311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T A3842G C8251T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508978
 2020-04-03 2020-08-04
 France hCoV-19/France/ARA19340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGC1- C241T C1059T C3037T C14408T A23403G G25563T G28325A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508979
 2020-04-03 2020-08-04
 France hCoV-19/France/ARA19556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508980
 2020-04-03 2020-08-04
 France hCoV-19/France/ARA19570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_509073
 2020-04-03 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T G21830T C23124G A23403G G24751T G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509074
 2020-04-03 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T G21830T C23124G A23403G G24751T G25563T CTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29784-

EPI_ISL_509075
 2020-04-03 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4236G A6601G G11083T C14805T T25655C G26144T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509445 MT827207
 2020-04-03 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0041/2020
 ATTAAA1- C241T C823T C1059T C3037T C11866T T11980C C14408T A23403G G25563T

EPI_ISL_509446 MT827208
 2020-04-03 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0042/2020
 ATTA1- C241T C1059T C3037T C14408T TAT22189- A23403G G25563T G29690T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509519
 2020-04-03 2020-08-05
 Australia hCoV-19/Australia/NSW2280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_511033
 2020-04-03 2020-08-07
 Portugal hCoV-19/Portugal/PT0774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T G17964T TTA21991- A23403G C23664T A26530G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511185
 2020-04-03 2020-08-07
 Portugal hCoV-19/Portugal/PT0928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C4276T C14408T C15720T A23403G G25563T C28253T A29365G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511488
 2020-04-03 2020-08-08
 Portugal hCoV-19/Portugal/PT0937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511874
 2020-04-03 2020-08-09
 United States hCoV-19/USA/MD-HP01656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5555A C14408T A23403G G24368C G25563T C27005T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512814 MT872493
 2020-04-03 2020-08-11
 Sierra Leone SARS-CoV-2/human/SLE/KGH-G-8604/2020
 ATTAA1- C6312A G11083T C13730T C23929T C28311T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_512815 MT872494
 2020-04-03 2020-08-11
 Sierra Leone SARS-CoV-2/human/SLE/KGH-G-8607/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T A23403G A25397G GGG28881AAC

EPI_ISL_517512
 2020-04-03 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D2B04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T C29546T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_520730
 2020-04-03 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920639763/2020
 C241T C3037T C6636T C14408T C18877T A23403G G25563T

EPI_ISL_522691 MT973329
 2020-04-03 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G102K C4540T A4624G C8782T T9477A C14805T G22364K G22410K G25979T G26062T T28144C C28311T C28657T C28863T C29837M ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_522856
 2020-04-03 2020-08-26
 Italy hCoV-19/Italy/VR-IZSVe-46-41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- A187G C241T C3037T C9996T C14408T C14889T A23403G C25658T A26166T GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_523973
 2020-04-03 2020-08-27
 Brazil hCoV-19/Brazil/SP-177/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C10778T C14408T C18683T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_523975
 2020-04-03 2020-08-27
 Brazil hCoV-19/Brazil/SP-179/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T115C C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_524432
 2020-04-03 2020-08-28
 United States hCoV-19/USA/NC-200313/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C10319T C12525T C14408T A23403G G25563T C27964T GAGTACGATCGAGT29745- AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_524620
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-12612C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524623
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-126133C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524630
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-126109F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524634
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C835T G1397A T9037C G11083T G14653A C15240T C28311G T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524647
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260FDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7072Y C14408T A23403G G26640T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524682
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T8649C C14408T A23403G G24368T G25563T C29635Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524693
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11962T C14408T A19543C A23403G T25848C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524704
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260F75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27384C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524705
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524712
 2020-04-03 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9979T C14408T A19686G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524792
 2020-04-03 2020-08-28
 Brazil hCoV-19/Brazil/AP-IEC-162620/2020
 C241T C3037T C14396T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_525651
 2020-04-03 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-37630-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T G13558A C14408T A23403G G25563T C28821T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525652
 2020-04-03 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-37640-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G C25626T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526494
 2020-04-03 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G C3987T G10097A CC14407TT C17939T C18687T A23403G C23731T G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527381
 2020-04-03 2020-09-03
 United States hCoV-19/USA/FL-AO2N/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T AAGTGCAGCCCGTCTTACACCGTGCGGCAC13482- C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_528538
 2020-04-03 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/H29/2020
 C8782T C16293T G26211T T28144C G28774T G28878A G29742A

EPI_ISL_529692
 2020-04-03 2020-09-10
 United Kingdom hCoV-19/Scotland/EDB6935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T T8822G C10582T C14408T A23403G G25563T G27758T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530055
 2020-04-03 2020-09-10
 Spain hCoV-19/Spain/MD-LP52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12970T C14408T A20268G A23403G C28333T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530232
 2020-04-03 2020-09-11
 Australia hCoV-19/Australia/QLD967/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_530276
 2020-04-03 2020-09-11
 Australia hCoV-19/Australia/QLD1016/2020/P1
 AT1- T1368C C6990T C10156T G11083T G12202T C14805T C20736T C23707T G26144T A26440C

EPI_ISL_534837
 2020-04-03 2020-09-14
 United Kingdom hCoV-19/England/OXON-B30DF/2020
 A2480G C2558T C3737T G11083T C14805T G25354T G26144T C27679T

EPI_ISL_534926
 2020-04-03 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4065/2020
 C241T C3037T C14408T A23403G

EPI_ISL_534966
 2020-04-03 2020-09-14
 United Kingdom hCoV-19/England/OXON-B46BE/2020
 C241T C3037T A11519G C14408T A23403G GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_536412
 2020-04-03 2020-09-16
 Singapore hCoV-19/Singapore/871/2020
 ATTAAAGGTTTATACC1- C6310A C6312A A9419G G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_537385
 2020-04-03 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- G160T C241T C1059T C3037T C12880A T13006C C14408T G17302T A23403G C24034T G25563T C25688T C27476T C29205T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_537443
 2020-04-03 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-99005905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5621T T13006C C14408T C17172A A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537498
 2020-04-03 2020-09-16
 United States hCoV-19/USA/CA-UCLA-159/2020
 ATTAAAGGTTTA1- C2676T C8782T C16646T C21575T A22606T G23755T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_537859
 2020-04-03 2020-09-16
 Spain hCoV-19/Spain/RI-CSIC-98002358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T TGGTCATGTTATGGT508- C1059T C3037T T13006C C14408T C17004T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538162
 2020-04-03 2020-09-16
 Spain hCoV-19/Spain/AN-CSIC-98001806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C17639T A20268G A23403G A28222G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538355
 2020-04-03 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_538356
 2020-04-03 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2830/2020
 ATTAAAGG1- C241T C2416T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538359
 2020-04-03 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T G20679A A23403G G23593T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538360
 2020-04-03 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7382A G11083T C14408T C18877T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538362
 2020-04-03 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G160T C241T C1059T C3037T G8371T C14408T A23403G G25217T G25563T G29688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538365
 2020-04-03 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G C25433T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538473
 2020-04-03 2020-09-17
 Singapore hCoV-19/Singapore/939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2937T C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538474
 2020-04-03 2020-09-17
 Singapore hCoV-19/Singapore/940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T C28432T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538795
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA4CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1514T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538815
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA1C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4551T C14408T T18351C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538886
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA3EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C C29741T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538893
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA5CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6883T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538903
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539007
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A893A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T A3964G G11083T C14805T G22344T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539010
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C4158T C6070T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539017
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A87C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C8389T C14408T A23403G C23453T G25563T C26111Y C29774Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539018
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8D98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539037
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8BDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3250T C14408T G23108S A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539063
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C14408T C15324T A23403G G28881T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539067
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A835A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6145T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539073
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A89B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539092
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A824E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T C14408T T15522C A17039G T17835C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539096
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8B61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10505G C12623T C14408T A23403G C23679T C27046T GGG28881AAC C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539106
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A87B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21807A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539113
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A89FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539124
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8FCF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539145
 2020-04-03 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C593T C2558T C9724T C10156G G11071C C11074T G11083T C14805T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539254
 2020-04-03 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G G28690T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539255
 2020-04-03 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G G25269T C29144T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_539256
 2020-04-03 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G19542T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539258
 2020-04-03 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T514C G558K ATG1605- A2512W G3259K C10456T G13571K G16508K G17014T C17410T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_539851
 2020-04-03 2020-09-21
 China hCoV-19/Hong Kong/VM20008964/2020
 ATTAAA1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_542594
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-1228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542605
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-1241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542606
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-1242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542681
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-1375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T G1323T C3037T G11083T C14408T C21587T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542777
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-1530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542778
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-1531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543703
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543724
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T C25413T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543753
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25613T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543767
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3784T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543776
 2020-04-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C7124T C8782T C9561T T18736C G19636A T21973C C24034T C25433T T26729C C26895T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544585
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544588
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544595
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G27047T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545691
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T21015C A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545869
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G A10691G C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545870
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G A10691G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545873
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545874
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545953
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C5284T C6040T C6648T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_546810
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A G15906T T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546824
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3471T C10377T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547109
 2020-04-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C12459T C14408T T15978C A23403G T24982C G25563T A27421G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547495
 2020-04-03 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548124
 2020-04-03 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20VR2096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G713T A2480G C2558T G11083T C14805T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_560576
 2020-04-03 2020-09-29
 France hCoV-19/France/CVL8282/2020
 ATTAAAGGTTTATACCTTC1- C241T AAGTCATTT686- C1059T C3037T T13006C C14408T A23403G G25563T C25688T C28453T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_560597
 2020-04-03 2020-09-29
 France hCoV-19/France/HDF8255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T A2311G C3037T C9891T C14408T C16308T A23403G G23876A G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_560748
 2020-04-03 2020-09-29
 United States hCoV-19/USA/MN-MDH-1661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C10908T G11083T C14805T G26144T A27169G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560749
 2020-04-03 2020-09-29
 United States hCoV-19/USA/MN-MDH-1662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_560750
 2020-04-03 2020-09-29
 United States hCoV-19/USA/MN-MDH-1663/2020
 AT1- C241T C3037T C14408T C21707T A23403G A26530G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_560752
 2020-04-03 2020-09-29
 United States hCoV-19/USA/MN-MDH-1665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G8695A C8782T C17747T A17858G C18060T A24694T T28144C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_565955
 2020-04-03 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C5549T C14408T T15918C A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565957
 2020-04-03 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A187G C241T G520A G779R C3037T G11083K C14408T A23403G C25916T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_565967
 2020-04-03 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C14408T A23403G G25563T G27226K G29779K TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_565976
 2020-04-03 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C25976A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_568992
 2020-04-03 2020-10-02
 France hCoV-19/France/IHU-0923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T T10489C G11083T C14408T C19160T A23403G G25563T G28027T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569519
 2020-04-03 2020-10-02
 France hCoV-19/France/IHU-0452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T T13006C C14391T C14408T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569609
 2020-04-03 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0001/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT706220
 2020-04-03 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706223
 2020-04-03 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT731673
 2020-04-03 2020-07-08
 Morocco SARS-CoV-2/human/MAR/RMPS03/2020
 C241T C1684T C3037T G6404T C8208T C14408T C15324T G22363T A23403G C29362T

MT810599
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1119-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T A3337G C5241T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810600
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1120-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810601
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1121-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A19073G A23403G C24138T C25350T G28179T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810605
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1126-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810606
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1127-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T C17172T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810869
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1578-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T A2205C C3037T C14408T C21575T A23403G G25563T C28708T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810978
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0355-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810997
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0381-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811672
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0158-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C12462T C14408T A23403G C24034T G25563T C25703T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811680
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0166-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C3738T C10319T C14408T A23403G G25563T C27964T G29543T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811681
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0167-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T G22424T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811683
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0170-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T7562C C14408T C19032T T19527C A23403G G25563T C27964T C28099T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811693
 2020-04-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0214-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T C23202T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT856679
 2020-04-03 2020-08-06
 United States SARS-CoV-2/human/USA/SC-USC-COM0001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083T C14408T C16349T C21110T A23403G G25563T C27964T C28846T G29781C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT873065
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00168/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873070
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00060/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873084
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00145/2020
 AT1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873086
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00137/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873088
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00117/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873089
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00144/2020
 C241T AAGTCATTT686- C2416T C3037T C10440T C14408T A23403G G25563T G26233T

MT873094
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00053/2020
 A1- C241T G947A C2106T C3037T C14408T A23403G C28603T G28899T A29903-

MT873095
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00167/2020
 C241T C2416T C3037T C14318T C14408T A23403G G25563T G26233T

MT873097
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00100/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873110
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00142/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

MT873117
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00114/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T AAAAA29899-

MT873124
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00081/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873126
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00058/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873130
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00075/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

MT873141
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00115/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873157
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00087/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873158
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00140/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873165
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00126/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873168
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00074/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873172
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00110/2020
 ATTAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873179
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00108/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873180
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00121/2020
 C241T C2416T C3037T C8281T C14408T A22007T A23403G G25563T G26233T C26681T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

MT873190
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00156/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873194
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00063/2020
 ATTAAA1- C241T C2106T C3037T C14408T A23403G C28603T G28899T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT873197
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00139/2020
 ATTAAA1- C241T C2416T C3037T T4813C C14408T A23403G G25563T G26233T

MT873204
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00159/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873207
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00102/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873212
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00118/2020
 C241T C2416T C3037T C8281T C14408T A22007T A23403G G25563T G26233T C26681T

MT873217
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00165/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873222
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00176/2020
 C241T C2106T C3037T C14408T A23403G C28603T G28899T

MT873228
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00065/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873231
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00084/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873233
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00098/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873236
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00076/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873240
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00054/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873243
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00057/2020
 C241T C2416T C3037T C8281T C14408T G14449T A22007T A23403G G25563T G26233T

MT873247
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00135/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873266
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00106/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873273
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00122/2020
 ATTAA1- C19T C241T C2416T C3037T C11752T C14408T A23403G T23560C G25563T G26233T

MT873281
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T A23403G G25563T A27821G

MT873284
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00107/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873287
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00091/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873303
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00113/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873304
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00068/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873309
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00164/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873318
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00151/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873321
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00129/2020
 C241T C2416T C3037T C10440T C14408T A23403G G25563T G26233T

MT873326
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00169/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873328
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00052/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G T25265A G25563T G26233T

MT873330
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00157/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G24933T G25563T C25916A C27247T

MT873342
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00166/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873343
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00109/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873356
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00090/2020
 C241T C2416T C3037T C8281T C14408T A22007T A23403G G25563T G26233T

MT873362
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00130/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873382
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00080/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873383
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00170/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873390
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00124/2020
 G105T C241T C3037T A9826G C14408T C18877T A23403G G25563T

MT873401
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00092/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873402
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00158/2020
 ATT1- C241T C2416T C3037T C8281T C14408T G21746C A22007T A23403G G25563T G26233T

MT873405
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00138/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873426
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00143/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873428
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00104/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873436
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00163/2020
 ATTAAA1- C241T C2416T C3037T T6931C C14408T A23403G G25563T G26233T

MT873439
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00089/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G A23902T C24096A G25563T T28251C

MT873444
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00083/2020
 ATTAAA1- C241T C2416T C3037T A5725G G7743T C14408T C16887T A23403G C24096A G25563T

MT873451
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00116/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873454
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00095/2020
 C241T C2416T C3037T A5725G C9969T C14408T C16887T A23403G C24096A G25563T

MT873455
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2416T C3037T C12068T C14408T A23403G G25563T G26233T

MT873462
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00062/2020
 C241T C2416T C3037T T3460C G5048T C8281T C14408T A22007T A23403G G25563T G26233T

MT873464
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00149/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873466
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00147/2020
 A1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT873473
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00123/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873477
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00105/2020
 A1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873491
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00127/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873498
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00148/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT873507
 2020-04-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00094/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT919768
 2020-04-03 2020-08-25
 Philippines SARS-CoV-2/human/PHL/GS/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C6312A G11083T C13730T C23929T C26224T C28311T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_418651
 2020-04-04 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7564T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_424642
 2020-04-04 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10077/2020
 C241T A618G C3037T G3994A C14408T C15324T A23403G G24821T

EPI_ISL_424643
 2020-04-04 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10089/2020
 G1440A G2891A C26340T

EPI_ISL_424644
 2020-04-04 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10086/2020
 C241T C679T C875T C3037T C14408T C15324T A23403G

EPI_ISL_424645
 2020-04-04 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10085/2020
 C241T C2113T C2306T C3037T C7765T C14408T C17690T C18877T A23403G G25563T G28280A

EPI_ISL_424646
 2020-04-04 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10088/2020
 G1440A G2891A C26340T

EPI_ISL_424647
 2020-04-04 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10092/2020
 C241T C3037T C14408T C15324T C15738T G17259T A23403G G25776T

EPI_ISL_425150
 2020-04-04 2020-04-14
 United States hCoV-19/USA/WI-UW-93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4755T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_425161
 2020-04-04 2020-04-14
 United States hCoV-19/USA/WI-UW-104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C125T C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_426475 MT350257
 2020-04-04 2020-04-17
 United States SARS-CoV-2/human/USA/VA-DCLS-0068/2020
 ATTAAA1- G8R C241T C2416T C3037T C10626T C10712T C14408T A23403G G25563T C28887T C29733T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_427100 MT451584
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC836/2020
 T490A C3177T C6285T C8782T C15960T T18736C G19684T C24034T C27635T G28077C T28144C A29700G

EPI_ISL_427101 MT451585
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC837/2020
 C241T C1594T C3037T C3874T C8290T C11109T C14408T C18788T A23403G G25563T

EPI_ISL_427102 MT451586
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC842/2020
 C241T C1059T C3037T G8185A C14408T T17380C T21931C A23403G C23785T G25563T

EPI_ISL_427103 MT451587
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC843/2020
 C241T C3037T C14408T A23403G

EPI_ISL_427105 MT451589
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC845/2020
 C241T C1594T C3037T C3768T C8290T C11109T C14408T C18788T A23403G G25563T G29399T

EPI_ISL_427106 MT451590
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC846/2020
 C884T G1397A C3040T G8653T -11075TTT G11083T C14932T C27999T T28688C G29742T

EPI_ISL_427107 MT451591
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC847/2020
 C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_427108 MT451592
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC848/2020
 C241T C1059T C3037T C14408T A23403G G25563T G27916T

EPI_ISL_427109 MT451593
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC849/2020
 C241T C1059T C3037T C14408T C22414M A23403G G25563T

EPI_ISL_427111 MT451595
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC851/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29259T

EPI_ISL_427113 MT451597
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC853/2020
 C241T C3037T C14408T A23403G

EPI_ISL_427115 MT451599
 2020-04-04 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC856/2020
 C241T C2416T C3037T T12112C C14408T C17690T G21974C A23403G G25563T G26233T

EPI_ISL_427319
 2020-04-04 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4597S/2020
 C3037T C14408T A20268G A23403G C24034T

EPI_ISL_427620
 2020-04-04 2020-04-19
 United States hCoV-19/USA/AK-PHL101/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C16457T A23403G G25523T G25563T T27869C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_428385 MT635255
 2020-04-04 2020-04-20
 United States SARS-CoV-2/human/USA/CT-Yale-066/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28077T

EPI_ISL_428791
 2020-04-04 2020-04-22
 United States hCoV-19/USA/NY-NYUMC277/2020
 C241T C1059T C3037T C14408T C21742T A23403G C23635T G25563T

EPI_ISL_428792
 2020-04-04 2020-04-22
 United States hCoV-19/USA/NY-NYUMC278/2020
 C241T C1059T C3037T C11916T C14408T C18998T A19902G A23403G G25563T G28307T G29540A

EPI_ISL_429976 MT415901
 2020-04-04 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T C29870A

EPI_ISL_430578 MT451726
 2020-04-04 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1062/2020
 C241T C3037T T13210C G13348T C14408T A20268G A23403G G29260T

EPI_ISL_430670 MT451728
 2020-04-04 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1067/2020
 C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_430809
 2020-04-04 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C4002T G10097A G11083T C13536T C14408T C18246T A23403G C23731T GGG28881AAC ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_430917 MT412274
 2020-04-04 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-5749/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- CC36TA C241T C3037T C10138T C14408T A23403G C25452T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430926 MT412283
 2020-04-04 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-5772/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C3037T T11879C C14408T C18877T A23403G G25563T C26681T TG29867AA C29870A -29904AAAAAAAAAAAAAA

EPI_ISL_430927 MT412284
 2020-04-04 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-5773/2020
 ATTAAAGG1- ATACCTTCCCAGGTAACAAACC12- C36T C241T C1059T C3037T A6331G C10851T C14183T C14408T A23403G G25563T C29199T AAAA29900-

EPI_ISL_432178
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A12B/2020
 C241T C3037T C14408T T19839C A23403G C26873T GGG28881AAC

EPI_ISL_432181
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29E16/2020
 C241T A1367C C3037T C14408T C19814Y A20268G A23403G C28854T

EPI_ISL_432186
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29E61/2020
 A1- C241T C2416T C3037T C14408T C14786T C19884T A23403G G25563T

EPI_ISL_432187
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A06A/2020
 C241T C3037T C14408T C16289T C20594T A23403G G25429T G28300T

EPI_ISL_432193
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29BC4/2020
 ATTA1- C241T C3037T C5506T G14241T C14408T A23403G

EPI_ISL_432194
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29E43/2020
 A1- C241T C3037T A3633W G9220A C14408T A23403G T26512C

EPI_ISL_432195
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29C3A/2020
 A1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_432197
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29DDD/2020
 C241T C1059T C3037T C10376T C14408T G18583T G21724T T21745C A23403G G24368T G25563T G29773T

EPI_ISL_432201
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A0E2/2020
 ATTA1- C241T C3037T G13749T C14408T G17808T G21624T A23403G G27915T GGG28881AAC A29865R

EPI_ISL_432203
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29E52/2020
 C241T T1918C C3037T C14408T C18877T A23403G G25563T

EPI_ISL_432204
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A10D/2020
 C241T C3037T A3911G C8772T C14408T A23403G C26028T C27970Y

EPI_ISL_432205
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29E34/2020
 C241T C3037T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_432215
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29DCE/2020
 ATTA1- G174A C241T C313T C3037T C14408T A23403G C26873T GGG28881AAC

EPI_ISL_432219
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29C0D/2020
 C241T C1059T C3037T C10376T C14408T G18583T A23403G G24368T G25563T G29773T

EPI_ISL_432229
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29D91/2020
 A1- C241T C3037T G11521T C14408T G15016T A23403G GGG28881AAC C29284T

EPI_ISL_432230
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A0B5/2020
 ATTAAAGGT1- C241T C3037T G10097A C14408T C17678T C21575T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_432234
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A097/2020
 C241T C683T C3037T C14408T C14741T C21516T A23403G C29640T

EPI_ISL_432243
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29BF1/2020
 ATTA1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_432244
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29D55/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432251
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A088/2020
 ATTAA1- C241T C3037T T3100G G10097A C13584T C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_432252
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A0F1/2020
 AT1- C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_432253
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29B79/2020
 ATT1- G1440A G2891A C7011T

EPI_ISL_432259
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29DFB/2020
 G1440A G2891A C25669T C27549Y G28851T

EPI_ISL_432267
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29E07/2020
 ATTA1- C241T C3037T C14408T A23403G

EPI_ISL_432274
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A11C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G1589R C3037T C14408T A23403G G25429T G29474T

EPI_ISL_432297
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29D82/2020
 C241T C1059T C3037T C14408T A23403G G24368T C24621T G25563T C28893T C29353T

EPI_ISL_432880
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB921/2020
 C241T C3037T C14408T C22879A A23403G

EPI_ISL_432885
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB926/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433049
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F792/2020
 G1440A G2891A C10507T

EPI_ISL_433244
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB788/2020
 C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T C26461T

EPI_ISL_433247
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB799/2020
 C241T C1377T C3037T C14408T C16289T A23403G G25429T G28077T

EPI_ISL_433248
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB801/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433250
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB821/2020
 G370T T9208G G11083T C14805T T17247C G26144T

EPI_ISL_433253
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB838/2020
 C241T C3037T C14408T C21549T A23403G GGG28881AAC

EPI_ISL_433254
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB842/2020
 C241T C313T C3037T T3268C C14408T A23403G GGG28881AAC

EPI_ISL_433255
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB848/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433256
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB852/2020
 C241T C3037T G10523C T14079C C14408T A23403G GGG28881AAC

EPI_ISL_433257
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB860/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433260
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB868/2020
 C241T C3037T A3215G C14408T G15438T A20268G A23403G G27217T

EPI_ISL_433261
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB877/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433262
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB880/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433263
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB884/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433265
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB886/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_433266
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB888/2020
 C241T C3037T G4255T G8653T C14408T C20480T A23403G C23481T A26507T A26530G G27746T C28253T

EPI_ISL_433267
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB889/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_433621
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3551A T12066C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433626
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433632
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433638
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433701
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-779FA/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433709
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78285/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433710
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78294/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_433711
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-782A3/2020
 C241T C3037T C14408T G16852T A23403G GGG28881AAC

EPI_ISL_433713
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-782D0/2020
 C241T C3037T C14408T A23403G C27679T GGG28881AAC

EPI_ISL_433717
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78319/2020
 C241T C3037T C14408T C16289T A23403G G25429T G27915A

EPI_ISL_433735
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78461/2020
 C241T C3037T C14408T G22132A A23403G GGG28881AAC C29358T

EPI_ISL_433737
 2020-04-04 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7848F/2020
 C241T C3037T C14408T A21137G C21638T A23403G G25429T

EPI_ISL_434071 MT632868
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S311/2020
 C3311A C8782T C17747T A17858G C18060T G21305A T28144C

EPI_ISL_434077 MT632856
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S317/2020
 C3311A C8782T G17671T C17747T A17858G C18060T G21305A T28144C

EPI_ISL_434079 MT632897
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S319/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434093 MT632911
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S333/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434094 MT632785
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S334/2020
 C241T C1059T C3037T G7560A C14408T G19999T G21452T C21646T A23403G G25563T

EPI_ISL_434100 MT632895
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S340/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434106 MT632847
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S346/2020
 C3311A C8782T G17671T C17747T A17858G C18060T C22290T T28144C

EPI_ISL_434224 MT632896
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S464/2020
 C241T C1059T C3037T C5986T C6040T C14408T A23403G G25563T

EPI_ISL_434239 MT632958
 2020-04-04 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S479/2020
 G1401A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_434466
 2020-04-04 2020-04-29
 Greece hCoV-19/Greece/53/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- GTTATG515- A2480G C2558T G6872A C9491T G11083T C14805T G26144T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_434665
 2020-04-04 2020-04-30
 Sweden hCoV-19/Sweden/20-07042/2020
 C241T C1059T C3037T A3894G C8917T C14408T C18501T A23403G G24368T G25563T A25718G

EPI_ISL_435470
 2020-04-04 2020-05-05
 United States hCoV-19/USA/LA-SR0169/2020
 C241T C1059T C3037T C14408T A23403G C24034T G25563T C27964T

EPI_ISL_435472
 2020-04-04 2020-05-05
 United States hCoV-19/USA/LA-SR0174/2020
 C241T GTCATGTTA510- C1059T C3037T G3969A C10319T G11083T G14186A C14408T A23403G G25563T C27964T

EPI_ISL_436636 MT706448
 2020-04-04 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436943 MT446343
 2020-04-04 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-075/2020
 C241T C1059T C1225T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_437045 MT449638
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1045/2020
 ATTAAAGGT1- A14940G T15922Y

EPI_ISL_437046 MT449639
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1046/2020
 C4475T C10277T C14178T A23796G

EPI_ISL_437048 MT449641
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1048/2020
 ATT1- C10277T

EPI_ISL_437050 MT449643
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1050/2020
 AT1- C37T C10277T T15922Y C27500T

EPI_ISL_437426 MT450912
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0211/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437427 MT450913
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0212/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437428 MT450914
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G A24484T G25563T

EPI_ISL_437429 MT450915
 2020-04-04 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0214/2020
 AT1- C241T C1059T C3037T C14408T A23403G A24484T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_437435
 2020-04-04 2020-05-08
 Serbia hCoV-19/Serbia/KV26-04/2020
 C241T C3037T G10265A C14408T A15972G C19718T A23403G T28759C GGG28881AAC

EPI_ISL_437436
 2020-04-04 2020-05-08
 Serbia hCoV-19/Serbia/NP363-04/2020
 C241T C3037T G10265A C14408T A15972G C19718T A23403G T28759C GGG28881AAC

EPI_ISL_437651
 2020-04-04 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1406/2020
 G529T ATG1605- C12876T C28253A

EPI_ISL_437654
 2020-04-04 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1427/2020
 C241T C1059T C3037T C14408T C17125T A23403G G24368T G25563T

EPI_ISL_437655
 2020-04-04 2020-05-11
 Denmark hCoV-19/Denmark/ALAB-SSI-1434/2020
 C241T C1059T C3037T C12781T C14408T C15842A G22103C A23403G G25563T

EPI_ISL_437842 MT461642
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A G29864R TG29867AA C29870A -29904AAAAAAAAAAAAAAAA

EPI_ISL_437845 MT461645
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G24075A G25563T C27476T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_437853 MT461650
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6507/2020
 AT1VD A4T A31T C36T C241T C1059T C3037T C14408T A23403G G25563T C27804T G29553A -29904AAAAAAAAAAAAAA

EPI_ISL_437854 MT461651
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6514/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T G13459T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_437855 MT461652
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6520/2020
 ATTAAAG1- AAC34TTT C241T C1059T C3037T C6040T C14408T C14599T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_437859 MT461656
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_437860 MT461657
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C -29904AAAAAAA

EPI_ISL_437861 MT461658
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6547/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C5717T C8782T C17326T C17747T A17858G A17884G C18060T G19645T T28144C C29686A G29711T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_437862 MT461659
 2020-04-04 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T A12148T C13536T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_438142
 2020-04-04 2020-05-12
 United States hCoV-19/USA/WA-S589/2020
 C241T C1059T C3037T C5717T C14408T A23403G G25563T G29553A

EPI_ISL_438143
 2020-04-04 2020-05-12
 United States hCoV-19/USA/WA-S590/2020
 C5784T C8782T C17747T A17858G C18060T G24794T G26730A T28144C

EPI_ISL_438144
 2020-04-04 2020-05-12
 United States hCoV-19/USA/WA-S591/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_438145
 2020-04-04 2020-05-12
 United States hCoV-19/USA/WA-S592/2020
 C241T C1059T C3037T C5717T C14408T A23403G G25563T G29553A

EPI_ISL_440670
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/BRIS-122535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G G7647T C7851T C9223T G11083T C12664T C14805T T17247C T25202K G26144T

EPI_ISL_441035
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3DE1/2020
 C241T C3037T G11548A C14408T A23403G GGG28881AAC

EPI_ISL_441036
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3DF0/2020
 C241T C3037T C14408T A23403G

EPI_ISL_441037
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3E0C/2020
 G1440A G2891A C18401T A27669G A29496G

EPI_ISL_441038
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3E1B/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441039
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3E39/2020
 T1368C C6990T A9634T G11083T C14805T C23707T G26144T

EPI_ISL_441040
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3E48/2020
 C241T A1112G C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441041
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3E57/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441042
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3E66/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441043
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3E75/2020
 C241T C3037T G7798T C14408T A20268G A23403G C28854T

EPI_ISL_441045
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3EA2/2020
 C241T C3037T C14408T A23403G

EPI_ISL_441046
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3EB1/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T A27038G

EPI_ISL_441047
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3EFD/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441049
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3F90/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_441050
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3FAF/2020
 C241T C1059T C1437T C3037T T13006C C14408T A23403G G25563T C25688T A25864G

EPI_ISL_441051
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3FBE/2020
 C241T C3037T A10948G A11117G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_442066
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7B871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14120T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_442094
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7BC93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C147A C4540T C8782T T9477A C14805T A21489C T25202K G25979T T28144C C28311T C28657T C28863T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442097
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7BCEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C3037T C14408T C19488T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_442155
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7BDDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10702T C14408T T19329C A23403G T25202K ATTGAACTTTCATTAATTGACTTCTATTTGTGCTTT27759- GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_442192
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7C97D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1933R C3037T C6990T C14408T A23403G G25650T A26530R C29200T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442193
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7BCC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18027T A23403G GGG28881AAC

EPI_ISL_442954
 2020-04-04 2020-05-12
 United Kingdom hCoV-19/England/CAMB-80CB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14120T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_443253
 2020-04-04 2020-05-12
 United States hCoV-19/USA/MN-UMGC-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1238T C8782T C17747T A17858G C18060T T28144C T28924C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_444079
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D3FCD/2020
 G11083T C14805T C23707T G26144T

EPI_ISL_444080
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D3FDC/2020
 A2480G C2558T C8605T T9642C G11083T C14805T C25904T G26144T C26994T

EPI_ISL_444081
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D3FEB/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_444082
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D3FFA/2020
 C241T C3037T A9243G C14408T A23403G C25350T

EPI_ISL_444083
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4005/2020
 C241T C3037T G5063A C14408T A23403G GGG28881AAC

EPI_ISL_444084
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4014/2020
 C241T C3037T C14408T A23403G G26640T C27046T GGG28881AAC

EPI_ISL_444085
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4023/2020
 C241T C3037T T11457C C14408T T17126C A23403G C25350T

EPI_ISL_444086
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4032/2020
 T1368C C6990T G11083T C14805T C22075T C23707T G26144T

EPI_ISL_444087
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4041/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_444088
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4050/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_444089
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D406F/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_444090
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D407E/2020
 C241T C3037T C14408T A23403G T27384C GGG28881AAC

EPI_ISL_444091
 2020-04-04 2020-05-13
 United Kingdom hCoV-19/England/LOND-D408D/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444856
 2020-04-04 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1391/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_444971
 2020-04-04 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH6372/2020
 C241T C3037T C14408T A20268G A21625G A23403G G29734C

EPI_ISL_445087 MT459979
 2020-04-04 2020-05-12
 Serbia SARS-CoV-2/human/SRB/Novi Pazar-363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A15972G C19718T A23403G T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_445374
 2020-04-04 2020-05-15
 Chile hCoV-19/Chile/Santiago_77/2020
 TT2AC GG7TA C241T C3037T C4002T T4011K G10097A C13536T C14408T A23403G C23731T C27804T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445375
 2020-04-04 2020-05-15
 Chile hCoV-19/Chile/Santiago_78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27804T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_445376
 2020-04-04 2020-05-15
 Chile hCoV-19/Chile/Santiago_79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C900T G1268A C3037T A12180G C14408T C19263T A20268G A23403G T26679C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_445378
 2020-04-04 2020-05-15
 Chile hCoV-19/Chile/Chillan_4/2020
 ATTA1CACC C241T C3037T G10265A C14408T A23403G A25080R GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_445980
 2020-04-04 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2D3B9/2020
 ATTA1- C241T C3037T C14408T A23403G T28067A A28390C GGG28881AAC

EPI_ISL_446183
 2020-04-04 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2EFB4/2020
 ATTAAAGGTT1- G1440A G2891A C25669Y G28851T

EPI_ISL_447420
 2020-04-04 2020-05-17
 Israel hCoV-19/Israel/13077875/2020
 C241T C1059T C3037T C11704T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447422
 2020-04-04 2020-05-17
 Israel hCoV-19/Israel/13077846/2020
 C241T C1059T C3037T G8353A C11916T C14408T C18998T A23403G G25563T G29000T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447424
 2020-04-04 2020-05-17
 Israel hCoV-19/Israel/13077823/2020
 C241T C1059T C2061T C3037T C11916T C14408T G17562T C18998T A23403G G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447795
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T T5158C G9817A C14408T A23403G G25563T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_447796
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T A23403G G25297A GGG28881AAC AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447797
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C274T C3037T C14408T C18877T A23403G G25563T C28708T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447798
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C6250T C14408T A23403G GGG28881AAC AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447800
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C18877T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447802
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T C14408T A23403G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447803
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C3037T C7728T C14408T A23403G A27433G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447804
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C7728T C14408T A23403G A27433G GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447805
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C10507T C14408T C18877T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_447806
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T A476G C3037T C10507T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447807
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T A476G C3037T C10507T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447808
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-97921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C3037T G8861A C10507T C14408T C18877T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447809
 2020-04-04 2020-05-18
 Colombia hCoV-19/Colombia/GVI-98006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C3037T C11916T C14408T C19018T T19632C A23403G G25563T G25641T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_447892 MT481932
 2020-04-04 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1141/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C9561T C14408T C17410A A23403G G25563T C27964T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_448497
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC965/2020
 C241T C3037T C5310T T7216C C14408T C16468T A23403G G25012T GGG28881AAC

EPI_ISL_448516
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACBBA/2020
 C92T C241T C3037T C7765T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_448536
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD96/2020
 C241T C2416T C3037T C14408T C14786T T16503C G17632T G20578T A23403G G25563T T27810C

EPI_ISL_449626
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3B05/2020
 C241T C3037T C14408T C18508T A23403G A28572G GGG28881AAC

EPI_ISL_449627
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3B14/2020
 C241T C1059T C3037T T8649C C14408T A23403G G24368T G25563T

EPI_ISL_449629
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3B32/2020
 C241T G2164A C3037T C13115T C14408T A23403G GGG28881AAC

EPI_ISL_449630
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3B41/2020
 C241T C3037T A10948G C14408T A23403G C27542T C28087T GGG28881AAC

EPI_ISL_449632
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3B6F/2020
 A2480G C2558T C6636T G7042T C7573T GT9623TA G11083T C14805T T18592C G26144T

EPI_ISL_449633
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3B8D/2020
 C241T C1642T C2485T C3037T C14408T A23403G G25429T

EPI_ISL_449636
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3BBA/2020
 C241T C1059T C3037T A12229G C14408T A23403G G24368T G25563T G29179T

EPI_ISL_449637
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3BC9/2020
 C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC

EPI_ISL_449639
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3BE7/2020
 C241T C1059T C3037T C14408T C18788T A23403G G24368T G25563T C27661T

EPI_ISL_449640
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3BF6/2020
 C241T AAGTCATTT686- C3037T G8602A C14408T A23403G C25782T A26530G G28739T

EPI_ISL_449644
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3C3F/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_449645
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3D3C/2020
 C5986T G11083T G13627T C14805T C15540T G25302T G26144T A28338G

EPI_ISL_449646
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3D4B/2020
 C241T C3037T T11457C C14408T A23403G G25009A C25350T

EPI_ISL_449647
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3D5A/2020
 A126T C241T C3037T G5917A C14408T A23403G T23849C GGG28881AAC

EPI_ISL_449648
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3D69/2020
 C241T C3037T C11962T C14408T A19543C A23403G T25848C GGG28881AAC

EPI_ISL_449649
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3D78/2020
 G1440A G2891A A3790G C4668T A6544G G11083T

EPI_ISL_449650
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3D87/2020
 T1368C C6990T G11083T C14805T C23707T G26144T

EPI_ISL_449651
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3D96/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_449652
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3DA5/2020
 

EPI_ISL_449653
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3DB4/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_449654
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3DC3/2020
 C241T C1427T C3037T G3419A C5806T C14408T A23403G GGG28881AAC

EPI_ISL_449655
 2020-04-04 2020-05-19
 United Kingdom hCoV-19/England/LOND-D3DD2/2020
 C241T C3037T C9979T C14408T A19686G A23403G GGG28881AAC

EPI_ISL_449791
 2020-04-04 2020-05-19
 Norway hCoV-19/Norway/2386/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A17270G G17658T C23114T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_450173
 2020-04-04 2020-05-20
 United States hCoV-19/USA/LA-SR0318/2020
 C241T C1059T C3037T C5869T C14408T A23403G G25563T C27964T

EPI_ISL_450174
 2020-04-04 2020-05-20
 United States hCoV-19/USA/LA-SR0319/2020
 T10G C241T C1059T C3037T C14408T A23403G G25563T T26320C C27964T

EPI_ISL_450175
 2020-04-04 2020-05-20
 United States hCoV-19/USA/LA-SR0320/2020
 C241T GTCATGTTA510- C1059T C3037T G3969A C10319T G11083T G14186A C14408T A23403G G25563T C27964T

EPI_ISL_450181
 2020-04-04 2020-05-20
 United States hCoV-19/USA/LA-SR0328/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_450182
 2020-04-04 2020-05-20
 United States hCoV-19/USA/LA-SR0329/2020
 C241T C1059T C3037T T6394C C10319T C14408T C16859T A23403G G25563T C27964T

EPI_ISL_450184
 2020-04-04 2020-05-20
 United States hCoV-19/USA/LA-SR0331/2020
 C241T C1059T C3037T C10319T C14408T G16622A A23403G G25563T C27964T

EPI_ISL_450185
 2020-04-04 2020-05-20
 United States hCoV-19/USA/LA-SR0332/2020
 C241T C1059T C3037T C14408T C19955G A23403G G25563T C27964T

EPI_ISL_450321
 2020-04-04 2020-05-20
 India hCoV-19/India/CCMB_NIV1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1812T A6081G C6312A G11083T C13730T C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_450322
 2020-04-04 2020-05-20
 India hCoV-19/India/CCMB_NIV2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T C19524T C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_452810 MT558661
 2020-04-04 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_453979
 2020-04-04 2020-05-28
 Portugal hCoV-19/Portugal/PT0265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T CGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29750-

EPI_ISL_453981
 2020-04-04 2020-05-28
 Portugal hCoV-19/Portugal/PT0267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAA1- C241T C3037T G8762A C14408T A23403G ATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29684-

EPI_ISL_453982
 2020-04-04 2020-05-28
 Portugal hCoV-19/Portugal/PT0268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15324T A23403G C26058T A29246G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454387
 2020-04-04 2020-05-28
 United States hCoV-19/USA/PA-MGEL110/2020
 T490A C3177T C8782T C11109T C16178T T18736C G21123T C24034T T26729C G28077C T28144C A29700G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454547
 2020-04-04 2020-05-28
 India hCoV-19/India/NIV-7044/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T A29827T G29830T

EPI_ISL_454779
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10030/2020
 A1- C241T C3037T C14408T T22020C A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_454780
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10031/2020
 ATTAAAG1- C241T C3037T C14408T C20148T G23383A A23403G G29422T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_454781
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10032/2020
 ATTAAA1- G1440A G2891A C10138T C20457T T27483C G28378T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455142
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TGGTCATGTTATGGT508- C3037T G12550A C14408T G20238T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455144
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19584C A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455146
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TGGTCATGTTATGGT508- C3037T G12550A C14408T G20238T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455148
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19584C A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455291
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordBrabant_107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11704T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455296
 2020-04-04 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T T18488C T18567C C18877T A19257G C19586T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455621 MT536188
 2020-04-04 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T T1066C C3037T A3503G C10319T C14408T A23403G G25563T A27690T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455775
 2020-04-04 2020-06-01
 India hCoV-19/India/RMRC24/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_455776
 2020-04-04 2020-06-01
 India hCoV-19/India/RMRC27/2020
 C241T C3037T T6868C C14408T C18877T A23403G T24045C G25563T C26735T GTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29690-

EPI_ISL_455777
 2020-04-04 2020-06-01
 India hCoV-19/India/RMRC28/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_455778
 2020-04-04 2020-06-01
 India hCoV-19/India/RMRC30/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455779
 2020-04-04 2020-06-01
 India hCoV-19/India/RMRC38/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T AATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29814-

EPI_ISL_456315
 2020-04-04 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1936/2020
 C241T C1059T C14408T T28144C

EPI_ISL_456317
 2020-04-04 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR1941/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456355
 2020-04-04 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2063/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_456910
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB3058/2020
 C241T C676T C3037T C9223T C14408T A23403G

EPI_ISL_456911
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB3062/2020
 C241T C3037T C9223T C14408T A23403G

EPI_ISL_457021
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB890/2020
 C241T C1267T C3037T C14408T A23403G C25433T

EPI_ISL_457031
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-1350E3/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457035
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-1351FF/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457036
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-13520B/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457037
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-13521A/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457038
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-135238/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457040
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-135265/2020
 C241T C1059T C3037T C14408T C22295T A23403G G24368T G25563T

EPI_ISL_457041
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-135274/2020
 C241T C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457042
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-135292/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457043
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-1352A1/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457044
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-1352B0/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457046
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-1352ED/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457131
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-135A8B/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457145
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-135BE2/2020
 C241T C2919T C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457155
 2020-04-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-135CD0/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457875
 2020-04-04 2020-06-02
 Kenya hCoV-19/Kenya/P230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G11230T C12213T T28144C G28167A G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458270
 2020-04-04 2020-06-04
 United States hCoV-19/USA/CA-SR0395/2020
 C241T C1059T C1887T C3037T C14408T T16993C A23403G G25563T

EPI_ISL_460099 MT520174
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00461/2020
 ATTAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_460159 MT520234
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00467/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460165 MT520240
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00666/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2416T C3037T T8665G C14408T G21824T A23403G G25311T G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460168 MT520243
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_460176 MT520251
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00466/2020
 ATTAAAG1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460177 MT520252
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00464/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460190 MT520265
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00669/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2416T C3037T C8090T G10631T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460201 MT520276
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00473/2020
 ATTAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_460208 MT520283
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00477/2020
 ATTAAAGGT1- C241T C1059T C3037T G3892T C14408T C21575T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460223 MT520298
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460225 MT520300
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00475/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460226 MT520301
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00469/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T G3892T C14408T C21658T A23403G G25563T C28391T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460227 MT520302
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460230 MT520305
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00474/2020
 ATTAAAGGTTTAT1- C241T C1059T G1868A C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460244 MT520319
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00463/2020
 ATTAAAG1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460272 MT520347
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T G26787A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460284 MT520359
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00453/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T C21575T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460296 MT520371
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460307 MT520382
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00664/2020
 ATTAAA1- C241T T833C C1059T C3037T C14408T C16616T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460328 MT520403
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00665/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G C28603T G28899T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460351 MT520426
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G3892T C14408T C21575T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460356 MT520431
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00670/2020
 ATTAAAGGTTTATACCTTCCCAG1- G105T C241T C3037T C4543T C14408T C18877T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_460361 MT520436
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00472/2020
 ATTAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460383 MT520458
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00456/2020
 ATTAAA1- C241T C1059T C3037T G3892T C7926T C14408T T15648C C21575T A23403G G25563T C26916T AAAAA29899-

EPI_ISL_460385 MT520460
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460390 MT520465
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_460392 MT520467
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00479/2020
 ATTAAAG1- C241T C1059T C3037T G3892T C14408T C21575T A23403G G25563T AAAAAA29898-

EPI_ISL_460420 MT520495
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00476/2020
 ATTAAA1- C241T C1059T C3037T G3892T C14408T C21658G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_460441 MT520516
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460454 MT520529
 2020-04-04 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00459/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T G3892T C14408T A18057G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460636
 2020-04-04 2020-06-06
 Netherlands hCoV-19/Netherlands/Drenthe_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9267A G12550A C14408T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_463279 MT585084
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-031/2020
 C241T C1059T C3037T C8880T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_463282 MT585087
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-034/2020
 C241T C1059T C3037T C10319T C14408T A15442C G19086T A23403G G25563T C27964T

EPI_ISL_463283 MT585088
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-035/2020
 C241T C1059T C3037T C9286T C14408T T17886C A23403G G25563T C27964T

EPI_ISL_463285 MT585090
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-037/2020
 C241T C1059T C3037T A5958T C10319T A11268G C14408T A23403G G25563T C27964T

EPI_ISL_463286 MT585091
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-038/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_463287 MT585092
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-039/2020
 C241T C1059T C1758T C3037T C10319T C13168T C14408T A23403G G25563T G25907T C27964T

EPI_ISL_463295 MT585100
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-047/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463298 MT585103
 2020-04-04 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-050/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463903
 2020-04-04 2020-06-11
 Canada hCoV-19/Canada/QC_AC4/2020
 C241T C3037T C14408T C15324T C19255T A23403G C25433T CATAAACCTCATAATTAAAAATTTATCTAAGTCACTAACTGAGAATAAATATTCTCAATTAGATGAAGAGCAAC27297-

EPI_ISL_463931
 2020-04-04 2020-06-11
 Canada hCoV-19/Canada/QC_AR3/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_463943
 2020-04-04 2020-06-11
 Canada hCoV-19/Canada/QC_AT8/2020
 C241T C1059T C1150T C1223T C3037T C4886T C14408T G14829T A23403G A24782G G25563T G27561T C27964T

EPI_ISL_463947
 2020-04-04 2020-06-11
 Canada hCoV-19/Canada/QC_AU8/2020
 C241T C1059T G1126T C3037T C4784T C11916T C14408T C18998T G21786A A23403G G25563T G29540A

EPI_ISL_464070
 2020-04-04 2020-06-11
 Belgium hCoV-19/Belgium/CK-0404276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14599T C15324T T20295C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464071
 2020-04-04 2020-06-11
 Belgium hCoV-19/Belgium/TVMT-0404277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C13225T C14134T C14408T A23403G G25563T C25688T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466107
 2020-04-04 2020-06-11
 United Kingdom hCoV-19/England/20149005204/2020
 C241T C3037T C14408T A23403G C27923T GGG28881AAC

EPI_ISL_466206
 2020-04-04 2020-06-11
 United Kingdom hCoV-19/England/20149052404/2020
 C241T C3037T T9721Y C14408T T22325C A23403G C25350T C28657T

EPI_ISL_466207
 2020-04-04 2020-06-11
 United Kingdom hCoV-19/England/20149052604/2020
 C241T C3037T G4285T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_466213
 2020-04-04 2020-06-11
 United Kingdom hCoV-19/England/20149054104/2020
 C241T C3037T C8025T C14408T A20268G A23403G G29734C

EPI_ISL_466217
 2020-04-04 2020-06-11
 United Kingdom hCoV-19/England/20149054504/2020
 C241T C3037T C14408T C18568T A23403G C25831T GGG28881AAC

EPI_ISL_467445
 2020-04-04 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0056/2020
 C241T T856A A1819C C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_467468
 2020-04-04 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467663
 2020-04-04 2020-06-14
 United States hCoV-19/USA/NM-UNM-00168/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468534 MT628257
 2020-04-04 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1605/2020
 AT1- C4776T C8782T C17104T C17747T A17858G C18060T G28086K T28144C

EPI_ISL_468717
 2020-04-04 2020-06-17
 United States hCoV-19/USA/LA-BIE-028/2020
 C241T C1059T C3037T C5869T C14408T A23403G G25563T C26333T C27964T

EPI_ISL_468761
 2020-04-04 2020-06-17
 Spain hCoV-19/Spain/Logrono_h2361/2020
 C8782T C8980T T9477A C14805T G25979T G26262A T28144C C28657T C28863T

EPI_ISL_471224
 2020-04-04 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471241
 2020-04-04 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471248
 2020-04-04 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471543
 2020-04-04 2020-06-22
 Brazil hCoV-19/Brazil/SP-131/2020
 A187G C241T C3037T G11417T C14408T A23403G AAAAAAAAAAAAA29891-

EPI_ISL_472255
 2020-04-04 2020-06-23
 United Kingdom hCoV-19/England/NORT-283DEE/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_474892
 2020-04-04 2020-06-23
 Spain hCoV-19/Spain/Granada-COV003020/2020
 C241T C3037T T9596Y C14408T C18377Y G18412K A20268G A23403G C24964Y C27493S G27777T G29449T C29870A

EPI_ISL_475120
 2020-04-04 2020-06-23
 Sweden hCoV-19/Sweden/20-08801/2020
 C241T C1059T C3037T T10288A C14408T A23403G G24368T G25563T A26226G

EPI_ISL_475593
 2020-04-04 2020-06-23
 United States hCoV-19/USA/CA-CSMC117/2020
 C241T C379A C3037T C11490G T14138C C14408T A18147G T20733C A23403G G25563T C29774T

EPI_ISL_475697
 2020-04-04 2020-06-23
 United States hCoV-19/USA/CA-CSMC81/2020
 C241T C3037T C8917T C14408T C18877T A23403G G25563T

EPI_ISL_475701
 2020-04-04 2020-06-23
 United States hCoV-19/USA/CA-CSMC85/2020
 C241T C3037T A4229C C7979T G8102A C13026G C13730T C14408T T18495C T21968G A23403G G25563T G26718C

EPI_ISL_475702
 2020-04-04 2020-06-23
 United States hCoV-19/USA/CA-CSMC86/2020
 C241T C3037T C6541T C14408T A23403G T25430C GGG28881AAC

EPI_ISL_476501
 2020-04-04 2020-06-25
 Canada hCoV-19/Canada/QC_AD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476825
 2020-04-04 2020-06-26
 Benin hCoV-19/Benin/1408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4463Y T13006C C14408T A23403G C24382Y G25563T C25688T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_478524
 2020-04-04 2020-06-30
 United Kingdom hCoV-19/England/NORT-283ECD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478530
 2020-04-04 2020-06-30
 United Kingdom hCoV-19/England/NORT-283F8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C23758T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478658
 2020-04-04 2020-06-30
 United Kingdom hCoV-19/England/NORT-295C19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19803T A23403G C26499T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478661
 2020-04-04 2020-06-30
 United Kingdom hCoV-19/England/NORT-295C46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C225T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479572
 2020-04-04 2020-06-30
 India hCoV-19/India/NIV-SARI-4375/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A6081G C13730T G17425T C28311T GGG28881AAC G29262T A29815T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480092
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T G16221T A17829T A23403G A26530G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480093
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C3037T C14408T A20268G A23403G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480094
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C13430T C14408T A23403G GGG28881AAC G29764T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480144
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T C3037T C14408T C20759T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480145
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480146
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T G1306T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480160
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480161
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C6268T C14408T A23403G G25879T GTT26155- GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480162
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480184
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T G1738T C3037T C14408T G16221T A17829T A23403G A26530G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480188
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480223
 2020-04-04 2020-07-01
 Japan hCoV-19/Japan/PG-0591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480394 MT772561
 2020-04-04 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480822 MT703989
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0171/2020
 AT1- C241T C1059T C3037T C5884T C10207T C13487T C14408T C22858T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480823 MT703990
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0172/2020
 ATT1- C241T C1059T C3037T G12322A C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480824 MT703991
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0173/2020
 AT1- G174A C241T C1059T C1917T C3037T T8278C C14408T C16997T A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_480825 MT703992
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0174/2020
 ATTA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480826 MT703993
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0175/2020
 AT1- C241T C1059T C3037T C14408T G15906T A16085G A23403G G25563T G27572A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480827 MT703994
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0176/2020
 ATTA1- C241T C3037T A13269C C14408T C15141T C15960T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_480828 MT703995
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0177/2020
 A1- C241T C1059T C3037T T10852C C14408T G20002T G20102A A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_481252
 2020-04-04 2020-07-03
 Japan hCoV-19/Japan/NGS-IB-2/2020
 C241T C313T GTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTT425- C823T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_481273 MT704127
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0027/2020
 AT1- A2480G C2558T G11083T C14805T G22346T G26144T C28163T

EPI_ISL_481274 MT704128
 2020-04-04 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0028/2020
 ATTAAAGGTTTATACCTTCCCAG1- A26T A2480G C2558T G11083T T12002G C14805T G22346T G26144T

EPI_ISL_481669
 2020-04-04 2020-07-03
 Finland hCoV-19/Finland/4A33S1/2020
 C241T C1059T C3037T T8158C C14408T C15540T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481670
 2020-04-04 2020-07-03
 Finland hCoV-19/Finland/4A60S1/2020
 C241T C3037T C6401T C14408T C16952T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481671
 2020-04-04 2020-07-03
 Finland hCoV-19/Finland/4A70S1/2020
 C241T C1059T C3037T C10582T C13487T C14408T A23403G G24368T G25563T G28857C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481672
 2020-04-04 2020-07-03
 Finland hCoV-19/Finland/4A75S1/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481673
 2020-04-04 2020-07-03
 Finland hCoV-19/Finland/4A9S1/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C28833T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482295
 2020-04-04 2020-07-03
 United States hCoV-19/USA/OR-PROV-004/2020
 C241T C3037T C14408T C18747T A23403G GGG28881AAC

EPI_ISL_482453
 2020-04-04 2020-07-03
 United States hCoV-19/USA/OR-PROV-218/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26907T

EPI_ISL_482673
 2020-04-04 2020-07-05
 Singapore hCoV-19/Singapore/372/2025
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483180
 2020-04-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0495-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T G4657A C14408T C15738T G21578T A23403G G25563T

EPI_ISL_483184
 2020-04-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0500-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T G4657A C14408T A20755G G21578T A23403G G25563T G29300T

EPI_ISL_483363
 2020-04-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0795-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C1887T C3037T C14408T A23403G G25563T T25842C

EPI_ISL_483390
 2020-04-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0834-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C379A C1059T C3037T G4657A C14408T A20755G G21578T A23403G G25563T G29300T

EPI_ISL_483605
 2020-04-04 2020-07-08
 Singapore hCoV-19/Singapore/582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C1427T C6310A C6312A G11083T C13730T C19524T C23929T C26549T C28311T AAAAAAAAAAAA29892-

EPI_ISL_485279
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G26031T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485283
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C9246T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485298
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485365
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485380
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T T8167A C14408T G22346A A23403G G25563T C27964T C29353T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485381
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485382
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A9058G C10319T C13119T C14408T A23403G G25563T G26690T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485383
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C14408T C14583T C16616T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485384
 2020-04-04 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1525C C3037T C10319T C14408T C19586A C21627T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487276 MT748758
 2020-04-04 2020-07-13
 Italy SARS-CoV-2/human/ITA/Milan-UNIMI-1/2020
 C241T TGGTCATGTTATGGT508- C3037T C14408T T16593C A16727G C18568T A23403G -25692TGA A26530G

EPI_ISL_487699
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3215G A12472G C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487740
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T G19009T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487850
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487858
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A11772G C12119Y C14805T T17247C C18526Y G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487922
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C22802M A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487962
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1480A G11083T C14805T T16820C G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487975
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7800T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487982
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12070T C14408T T17126C A20268G G22335T A23403G A27578T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487983
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C679Y G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488267
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FB63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488382
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12FB54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488456
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283D0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6843Y G10097A T13216G C14408T A19960G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488468
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-295C73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2219G C3037T G11521T C14408T G21123T C23185T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488484
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283E36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2232Y G4300T G11083K C14805T A23403R C25350Y G26144K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488505
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283C87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5079Y G10097A C14408T A23403G C23731T T25202K C25714T C27739T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488530
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-295D34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T A23403G T25202K GGG28881AAC C29546T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488587
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283E54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13862T C14408T A23403G T25202K C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488589
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283EDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC G29227A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488590
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283E18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3912T C7423T C24054T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488612
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283D93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488624
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283E09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488637
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283DFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T -11075TTT G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488641
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-295D07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C225T AG3046WR G11083T C14805T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488648
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-295C64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C225T G11083T C14805T G26144T A28741G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488656
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-295D16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2219G C3037T G11521T C14408T G21123K C23185T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488661
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283DC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T3909C G6373T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488685
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-295CA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A544G C854T G11083T C14805T T17247C G22708T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488690
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283D2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20465R A23403G T25202K T27652C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488694
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283D1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T C4683T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488722
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-295D25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T6691C G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488761
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283DA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488836
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-283DB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3737T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488880
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488888
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488913
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488914
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7749Y C12400T C14408T A23403G G25537R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488916
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488927
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488954
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T C3037T C9223T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488986
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T T7871Y C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489000
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4693C C7334T C10798A C13862T C14408T A23403G T28297C C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489021
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489022
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489029
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489045
 2020-04-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491602
 2020-04-04 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10712T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491604
 2020-04-04 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5977C C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491923 MT776417
 2020-04-04 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A T979C C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491924 MT776418
 2020-04-04 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C10712T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492059
 2020-04-04 2020-07-18
 United States hCoV-19/USA/AK-PHL108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1281T C3037T G5564A C14408T C19164T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492572
 2020-04-04 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FBFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492580
 2020-04-04 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FC15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492636
 2020-04-04 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FBCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15237T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492738
 2020-04-04 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FBEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A ATG1605- C20270T C24642G A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492741
 2020-04-04 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FBBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1459Y C3037T GACTATTGAAGT3328- A3490G G9224R G9414R C14408T G20275A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493129 MT856680
 2020-04-04 2020-07-21
 United States SARS-CoV-2/human/USA/SC-USC-COM0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083T C14408T C16349T C21110T A23403G G25563T C27964T C28846T G29781C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494377
 2020-04-04 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C751T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494381
 2020-04-04 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1130/2020
 C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T G29777T

EPI_ISL_494398
 2020-04-04 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2700T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494402
 2020-04-04 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1159/2020
 ATTA1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T

EPI_ISL_494416
 2020-04-04 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1180/2020
 AT1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_495601
 2020-04-04 2020-07-23
 United States hCoV-19/USA/MN-MDH-1302/2020
 ATTAA1- A38R A5595C C7488T C8782T C17747T A17858G C18060T A24694T C27970T T28144C G28812T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_495607
 2020-04-04 2020-07-23
 United States hCoV-19/USA/MN-MDH-1308/2020
 ATTAAA1- C8782T C16887T C17747T A17858G C18060T A24694T T28144C G28812T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_499336
 2020-04-04 2020-07-28
 United Kingdom hCoV-19/England/SHEF-C6473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7736A C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499344
 2020-04-04 2020-07-28
 United Kingdom hCoV-19/England/SHEF-CBFC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22427A A23403G G27441T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501212
 2020-04-04 2020-07-31
 Malaysia hCoV-19/Malaysia/5425/2020
 ATTA1- C6312A T7621C G11083T C13730T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_506992
 2020-04-04 2020-08-02
 South Korea hCoV-19/Korea/KCDC2198/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T G8371T C14408T C14688T A23403G G25563T

EPI_ISL_506993
 2020-04-04 2020-08-02
 South Korea hCoV-19/Korea/KCDC2199/2020
 ATTAA1- C241T C2416T C3037T G8371T C14408T C14688T A23403G G25563T

EPI_ISL_507165
 2020-04-04 2020-08-03
 United Kingdom hCoV-19/England/SHEF-C5B51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508821 MT834715
 2020-04-04 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0617/2020
 ATTAAAGGT1- T490A C3177T C6040T C8782T C8950T G12478A C16708G T18736C C24034T T26729C G28077C T28144C C28896G A29426C C29451T A29700G TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_508981
 2020-04-04 2020-08-04
 France hCoV-19/France/ARA19928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509076
 2020-04-04 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11563T C14408T C18877T G20489T A23403G G25563T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509447 MT827209
 2020-04-04 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C6267T C11916T C14408T C18998T A23403G G25563T G29540A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_510500
 2020-04-04 2020-08-06
 Spain hCoV-19/Spain/COV004215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T T13006C C14408T G17302T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510503
 2020-04-04 2020-08-06
 Spain hCoV-19/Spain/COV004219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1551T C3037T C12781Y C14408T A20268G A23403G G25218T G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510505
 2020-04-04 2020-08-06
 Spain hCoV-19/Spain/COV004222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T G6359A C14408T A20268G A23403G G25218T G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510507
 2020-04-04 2020-08-06
 Spain hCoV-19/Spain/COV004225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510509
 2020-04-04 2020-08-06
 Spain hCoV-19/Spain/COV004227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_511181
 2020-04-04 2020-08-07
 Portugal hCoV-19/Portugal/PT0924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A4853C C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_514480
 2020-04-04 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D19FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515202
 2020-04-04 2020-08-18
 Canada hCoV-19/Canada/QC_AF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1150T C3037T C4886T C14408T G14829T A23403G G25563T G27561T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515226
 2020-04-04 2020-08-18
 Canada hCoV-19/Canada/QC_AR7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C28717T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515228
 2020-04-04 2020-08-18
 Canada hCoV-19/Canada/QC_AT4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516832
 2020-04-04 2020-08-24
 United Kingdom hCoV-19/England/LOND-1260986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11537G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516834
 2020-04-04 2020-08-24
 United Kingdom hCoV-19/England/LOND-12608F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11173T C14408T A21866G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516858
 2020-04-04 2020-08-24
 United Kingdom hCoV-19/England/LOND-12609D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C11195T C13372Y C14408T C15216T C17762T A23403G G24740A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516866
 2020-04-04 2020-08-24
 United Kingdom hCoV-19/England/LOND-12609A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11312A C14408T C18681T A23403G C25350T C28528T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517513
 2020-04-04 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D2B31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C751T C3037T C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517772 MT966113
 2020-04-04 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0881/2020
 ATTA1- C241T GTTATG515- C2268T C3037T C14408T C18877T C21727T A23403G G25563T G27987T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_523957
 2020-04-04 2020-08-27
 Brazil hCoV-19/Brazil/SP-133/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A6319G C6525T C7164T C14408T C14931T C19687T A23403G G25088T T26149C GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_524514
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-173113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- -11075TTN G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524535
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-1725BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T C6730T C14408T A23403G T26497C G28001K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524562
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-1730DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524642
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260A74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9438Y G9479K C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524680
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260DA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1368C G5463T C6990T G11083T C14805T C16466Y C22075T C23707T G26144T C27920Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524686
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260DB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C12559T C14408T C14786T G20578T C23315T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524688
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260FEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C6636T G7042T C7573T GT9623TA G11083T C14805T T18592C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524689
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260EB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T T3873C T6238Y C14408T C14786T G20578T A23403G G25563T C27610T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524694
 2020-04-04 2020-08-28
 United Kingdom hCoV-19/England/LOND-12613B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5986T G11083T G13627T C14805T C15540T G25302T G26144T A28338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526471
 2020-04-04 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB3080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G24821T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527039
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527040
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527041
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527042
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527043
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G20332A A23403G G24368T G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527044
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C583T C1059T C3037T C14408T G20332A A23403G G24368T G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527045
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C28331T G29825T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527046
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527047
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527048
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1850G C3037T C14408T A20268G A23403G C28854T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527049
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T G4904T G5206T C14408T C19944T A23403G C24138T C25350T G29777T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527050
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T G4904T G5206T C14408T A18009C A23403G C24138T C25350T C25658T G28001T C28831T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527051
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10332T C14408T A23403G C25350T C25566T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527052
 2020-04-04 2020-09-03
 Australia hCoV-19/Australia/NSW2551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T G4904T G5206T C14408T G16912T A23403G C24138T C25350T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_529668
 2020-04-04 2020-09-10
 United Kingdom hCoV-19/England/PORT-2D2B6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530056
 2020-04-04 2020-09-10
 Spain hCoV-19/Spain/MD-LP53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12970T C14408T A20268G A23403G C28333T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534863
 2020-04-04 2020-09-14
 United Kingdom hCoV-19/England/OXON-B350D/2020
 C241T C3037T T3055C C14408T A20796G A23403G G24038T GGG28881AAC

EPI_ISL_534880
 2020-04-04 2020-09-14
 United Kingdom hCoV-19/England/OXON-B36EC/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_534894
 2020-04-04 2020-09-14
 United Kingdom hCoV-19/England/OXON-B392F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTA1- T137K C6040T G11083T C14805T C23707T G26144T AAAAAAAAAA29894-

EPI_ISL_537469
 2020-04-04 2020-09-16
 United States hCoV-19/USA/CA-UCLA-105/2020
 ATTAAAGGTTTAT1- C241T C379A C1059T C3037T A14041G C14408T A23403G G25563T C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_538156
 2020-04-04 2020-09-16
 Spain hCoV-19/Spain/AN-CSIC-98001786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A2140G C3037T C14408T A20268G A23403G T28600C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538363
 2020-04-04 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C14408T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_538364
 2020-04-04 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A23403G G25563T C25831T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538367
 2020-04-04 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2847/2020
 ATTAAAGGTTT1- C241T C2416T C3037T C14408T A23403G G25563T C25831T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538368
 2020-04-04 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C14408T A16395G A23403G G23593T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538475
 2020-04-04 2020-09-17
 Singapore hCoV-19/Singapore/941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538476
 2020-04-04 2020-09-17
 Singapore hCoV-19/Singapore/942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8730T C13730T C14408T A23403G G25429T C27416A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538477
 2020-04-04 2020-09-17
 Singapore hCoV-19/Singapore/943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A C8139T G11083T C13730T C18647T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538895
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA1D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T A9634T C10277T G11083T C14805T C17104T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539027
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8F38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G18391T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539044
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8ADD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G613T G1440A C1959T C2842T G2891A C10507T G29468C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539074
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8B52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1191T ATG1605- C11674T T13090C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539075
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8F83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12493T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539082
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8BF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C14408T A20268G C22295T A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539102
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3619T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539104
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539107
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8F92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C13430T C14408T G19117T A23403G G28079A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539110
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A88F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1195C C1218Y C3037T C14408T A23403G C27679Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539115
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8C22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14184Y C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539123
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8D5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539133
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8FA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9634T G9928A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539142
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8F0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539218
 2020-04-04 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8DF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A25174M G25567R GGG28881AAC C29545Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540217
 2020-04-04 2020-09-21
 United Kingdom hCoV-19/Wales/QEUH-9A4506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C5907T C7948T C9430Y C13247T C14408T C14937T A15945G T18144C A23403G C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541349
 2020-04-04 2020-09-22
 Brazil hCoV-19/Brazil/RJ-1830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C9940T C14408T A23403G G25437T T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541350
 2020-04-04 2020-09-22
 Brazil hCoV-19/Brazil/RJ-1862/2020
 ATTAAAGGTTTA1- C241T C1670Y C3037T C14408T A16205W A23403G T24163A T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541870
 2020-04-04 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr7/2020
 A1- C241T C3037T C13694T C14408T A23403G C28310T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_543786
 2020-04-04 2020-09-23
 United States hCoV-19/USA/TX-HMH-466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A18082G T19378C A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544243
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A18082G T19378C A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544251
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A18082G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544259
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17808T A23403G G25563T T27384C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544268
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544285
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5672T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544296
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C6401T C6843T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544311
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544604
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5628T C10319T C14408T C21575T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545659
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T G22344T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545877
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G A10691G C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545911
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G9473A A12785G C14408T A23403G G25563T C28909T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546719
 2020-04-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2331A C3037T C10319T C14408T C22264T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547536
 2020-04-04 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T22020C A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547537
 2020-04-04 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10138T C20457T T27483C G28378T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560753
 2020-04-04 2020-09-29
 United States hCoV-19/USA/MN-MDH-1666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560754
 2020-04-04 2020-09-29
 United States hCoV-19/USA/MN-MDH-1667/2020
 ATTA1- C241T C1059T C3037T C14408T C22523M A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_560755
 2020-04-04 2020-09-29
 United States hCoV-19/USA/MN-MDH-1668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A2480G C2558T C10908T G11083T C14805T G26144T A27169G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_560762
 2020-04-04 2020-09-29
 United States hCoV-19/USA/MN-MDH-1675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5878T G10870T C14408T A23403G G25563T A25859G C29149T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_569523
 2020-04-04 2020-10-02
 France hCoV-19/France/IHU-0457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3784T C5055T G11083T C14408T C16376T G19729A A23403G G24535T G25563T CGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29743-

MT459847
 2020-04-04 2020-05-11
 Greece SARS-CoV-2/human/GRC/53_38017/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- GTTATG515- A2480G C2558T C9491T G11083T C14805T G26144T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT477851
 2020-04-04 2020-05-14
 United States SARS-CoV-2/human/USA/AK101/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C16457T A23403G G25523T G25563T T27869C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

MT627748
 2020-04-04 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S592/2020
 ATTAAAG1- C241T C1059T C3037T C5717T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627751
 2020-04-04 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S590/2020
 ATTAAAGGTTTAT1- C5784T C8782T C17747T A17858G C18060T G24794T G26730A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627759
 2020-04-04 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S591/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627761
 2020-04-04 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S589/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C5717T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT704310
 2020-04-04 2020-07-02
 United States SARS-CoV-2/Panthera leo/USA/lion-2-041520/2020
 C7843T C8266T G9441R G11083T A13768G C14805T A15869T T17247C C17639T C18171T A23400G G23429A G26144T C28915T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

MT704311
 2020-04-04 2020-07-02
 United States SARS-CoV-2/Panthera leo/USA/lion-3-041520/2020
 ATT1- T65Y A1953R G3761R C7392Y C7843T C8266T G11083T A13768G C14805T A15869T T17247C C17639T C18171T T23075C GC23429AT G26144T C28915T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT704312
 2020-04-04 2020-07-02
 United States SARS-CoV-2/Panthera leo/USA/lion-041520/2020
 ATTAAAG1- C7392T C7843T C8266T G11083T A13768G C14805T A15869T T17247C C17639T C18171T T23075C GC23429AT G26144T C28915T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

MT704313
 2020-04-04 2020-07-02
 United States SARS-CoV-2/Panthera tigris/USA/tiger-2-040420/2020
 C241T C1059T C2710Y C3037T C14408T G23049R A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT704314
 2020-04-04 2020-07-02
 United States SARS-CoV-2/Panthera tigris/USA/P3_fecal_Vero/2020
 C241T C1059T C3037T C10615T C14408T A21759G G22343C T22929A A23403G G25563T C28291T AAAAAAAAAAAAAAAAAAAAA29883-

MT704315
 2020-04-04 2020-07-02
 United States SARS-CoV-2/Panthera tigris/USA/tiger-3-040420/2020
 ATTAA1- C241T C1059T C3037T C10615Y C14408T G15451R T22929W G23049R A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

MT704316
 2020-04-04 2020-07-02
 United States SARS-CoV-2/Panthera tigris/USA/tiger-4-040420/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T T23027Y G23049R A23403G C23709Y G25563T C29837M AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT706213
 2020-04-04 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4755T C14408T G15760A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706224
 2020-04-04 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C125T C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT747978
 2020-04-04 2020-07-13
 United States SARS-CoV-2/Panthera leo/USA/lion-2_Fecal_isolate/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C7843T C8266T G11083T A13768G C14805T A15869T T17247C C17639T C18171T A23400G G23429A G26144T C28915T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT810604
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1125-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C751T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810608
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1130-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810625
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1155-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2700T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810629
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1159-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810643
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1180-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811006
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0395-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T T16993C A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811198
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0495-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T C15738T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811202
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0500-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T A20755G G21578T A23403G G25563T G29300T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811375
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0795-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T T25842C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811401
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0834-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T A20755G G21578T A23403G G25563T G29300T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811682
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0169-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G C24034T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811686
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0174-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- GTCATGTTA510- C1059T C3037T G3969A C10319T G11083T G14186A C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811740
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0318-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C5869T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811741
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0319-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T T26320C C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811742
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0320-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- GTCATGTTA510- C1059T C3037T G3969A C10319T G11083T G14186A C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811748
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0328-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811749
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0329-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T6394C C10319T C14408T C16859T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811751
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0331-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T G16622A A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811752
 2020-04-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0332-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C19955G A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

NMDC60013281
 2020-04-04 2020-06-01
 China hCoV-19/Guangzhou/ID145/2020
 TTAAAGGTTTATACC2- A361G C8782T G22468T T28144C G28878A G29742A G29868A

EPI_ISL_418653
 2020-04-05 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T C26313T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418661
 2020-04-05 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7564T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_418664
 2020-04-05 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7564T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_421188
 2020-04-05 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10009/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T C19102T C21575T A23403G G25563T

EPI_ISL_424652
 2020-04-05 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10055/2020
 C241T C3037T C14408T C15324T A23403G C27509T

EPI_ISL_424653
 2020-04-05 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10058/2020
 C241T C3037T G4255T G11083T C14408T A23403G A26530G

EPI_ISL_424654
 2020-04-05 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10057/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_424655
 2020-04-05 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10056/2020
 C241T C3037T C11962T C14408T C15324T A23403G T25827C A27007G

EPI_ISL_424657
 2020-04-05 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10052/2020
 G1440A G2891A A22393G C28606T

EPI_ISL_424658
 2020-04-05 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10049/2020
 C241T A2238G C3037T C14408T C15324T A23403G

EPI_ISL_424664
 2020-04-05 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10062/2020
 C241T C3037T C14408T C15277T C15324T A23403G

EPI_ISL_426414 MT358637
 2020-04-05 2020-04-16
 India SARS-CoV-2/human/IND/GBRC1/2020
 C241T C3037T A6466G C14408T A22374G A23403G G28396A C29451T

EPI_ISL_426415
 2020-04-05 2020-04-16
 India hCoV-19/India/GBRC1s/2020
 C241T C3037T G3467T A6466G C14408T A22374G A23403G G28396A C29451T

EPI_ISL_427116 MT451600
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC857/2020
 C40M C241T C1059T C3037T C14408T A23403G G25563T C25572T

EPI_ISL_427117 MT451601
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC858/2020
 C241T C3037T C14408T A23403G C26996T GGG28881AAC

EPI_ISL_427118 MT451602
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC860/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_427119 MT451603
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC862/2020
 A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_427120 MT451604
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC863/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427122 MT451607
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC867/2020
 C241T C2416T C3037T T12112C C14408T A16942G G21974C A23403G G25563T G26233T

EPI_ISL_427123 MT451608
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC868/2020
 C241T C2416T C3037T T12112C C14408T A16942G G21974C A23403G G25563T G26233T

EPI_ISL_427124 MT451609
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC869/2020
 G1440A G2891A A27669G

EPI_ISL_427126 MT451611
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC871/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427129 MT451613
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC874/2020
 C241T C3037T C6723T C13568T C14408T G18745T A23403G T26094C

EPI_ISL_427130 MT451614
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC875/2020
 T490A C3177T C6285T C8782T C15960T T18736C G19684T C24034T C27635T G28077C T28144C A29700G

EPI_ISL_427131 MT451615
 2020-04-05 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC876/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_427320
 2020-04-05 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4637S/2020
 C241T C3037T C14408T A20268G A23403G A26693G

EPI_ISL_427321
 2020-04-05 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4649S/2020
 C3037T C14408T A20268G A23403G A28692C

EPI_ISL_427322
 2020-04-05 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4655S/2020
 C241T C3037T C14408T A23403G C25603T GGG28881AAC

EPI_ISL_427635
 2020-04-05 2020-04-19
 United States hCoV-19/USA/NY-NYUMC236/2020
 C241T C1059T C3037T C9118T T13672C C14408T A23403G G25563T

EPI_ISL_427636
 2020-04-05 2020-04-19
 United States hCoV-19/USA/NY-NYUMC237/2020
 C241T C920T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427640
 2020-04-05 2020-04-19
 United States hCoV-19/USA/NY-NYUMC241/2020
 C241T C1059T G1729T C3037T C14408T A23403G G23593T G25563T T27384C

EPI_ISL_428767
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC253/2020
 T212A C233T C241T C1059T C2536T C2842T C3037T C14408T G18937A A23403G G25563T

EPI_ISL_428768
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC254/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_428769
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC255/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_428770
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC256/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428772
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC258/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T C21855T A23403G G25563T A26433G

EPI_ISL_428773
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC259/2020
 C241T C1059T C3037T A7705T C11916T C14408T C21342T A23403G A25143G G25563T A25744G C26370T

EPI_ISL_428774
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC260/2020
 C241T C1059T G2447A C3037T C14408T A23403G G25563T

EPI_ISL_428775
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC261/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428776
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC262/2020
 C241T C1059T T1165C G1580A C3037T C14408T A23403G G25563T C25658T G27651T C27920T

EPI_ISL_428793
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC279/2020
 C241T C1059T C3037T C14408T C21697A A23403G G25563T

EPI_ISL_428795
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC281/2020
 C241T C920T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428797
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC283/2020
 C241T C1059T C3037T C14408T C15654T A23403G G25563T

EPI_ISL_428798
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC284/2020
 C241T C3037T T6691C C14408T C18877T A23403G G25563T

EPI_ISL_428799
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC285/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29149T

EPI_ISL_428801
 2020-04-05 2020-04-22
 United States hCoV-19/USA/NY-NYUMC287/2020
 C241T C1059T C3037T C14408T G23069T A23403G G25563T

EPI_ISL_428954
 2020-04-05 2020-04-22
 Luxembourg hCoV-19/Luxembourg/LNS5971805/2020
 A187G C241T C3037T C13620T C14408T A23403G T27722C GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_429630 MT375459
 2020-04-05 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4677/2020
 ATTAAAGGTT1- A12T C3037T C14408T A23403G C25418T G28812T AA29902-

EPI_ISL_430901 MT412258
 2020-04-05 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5359/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T C19763T A23403G G25563T A29903-

EPI_ISL_430902 MT412259
 2020-04-05 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5364/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T T8431C C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430904 MT412261
 2020-04-05 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C8782T C17747T A17858G C18060T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430919 MT412276
 2020-04-05 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-5754/2020
 TAAAGGTTTATACCTTCCCAGGTAACAAA3- C36T C241T C1059T C2003T C3037T C11916T C14408T C18998T A23403G G25563T GC29540AT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430922 MT412279
 2020-04-05 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-5763/2020
 ATTAAA1- A31T C36T C241T C3037T C14235T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_430923 MT412280
 2020-04-05 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-5764/2020
 ATTAAAGGT1- C36T C241T C1059T C3037T C14408T A23403G G25563T A29154T AAAAAAAAAAAAAAA29889-

EPI_ISL_432184
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2A167/2020
 ATTA1- A2480G C2558T C2607T G11083T T12037Y C14805T A17656G G26144T G29024K

EPI_ISL_432189
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29C76/2020
 A1- C241T C3037T C7945T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_432196
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29C49/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_432202
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29E8F/2020
 A1- C241T C313T C3037T C14408T A23403G G26849T GGG28881AAC

EPI_ISL_432247
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29C85/2020
 AT1- C241T C3037T G11521T C14408T G15016T A23403G GGG28881AAC C29284T

EPI_ISL_432248
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29D73/2020
 ATTAAAGGTTT1- G1440A C1722T G2891A C10401T G28851T

EPI_ISL_432249
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29DBF/2020
 A1- C193T A2480G C2558T G11083T C14805T G26144T AAA29901-

EPI_ISL_432279
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29C94/2020
 C241T C3037T C14408T A23403G G23522A G25767K

EPI_ISL_432292
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-29C58/2020
 C241T C3037T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_432675
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10FA3F/2020
 A4838G G11083T C14805T T17247C C17678T G26144T

EPI_ISL_432868
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB894/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_432869
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB895/2020
 C7423T T27032C C28863T

EPI_ISL_432870
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB896/2020
 C988T G11083T C12525T C14805T T17247C G26144T

EPI_ISL_432871
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB897/2020
 C241T C3037T C14408T A23403G G25244C G25429T C29144T

EPI_ISL_432872
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB899/2020
 C241T C3037T C4551T T5161A C14408T T17126C A20268G A23403G G29742T

EPI_ISL_432873
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB901/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_432874
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB909/2020
 C241T C313T C3037T T3268C C14408T A23403G GGG28881AAC

EPI_ISL_432877
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB914/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_432881
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB922/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432883
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB924/2020
 C241T C3037T C14408T A23403G T23590C C25782T GGG28881AAC

EPI_ISL_432886
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB927/2020
 C241T C3037T T14079C C14408T A23403G G25690T GGG28881AAC

EPI_ISL_432890
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB945/2020
 C241T C3037T C11345T C14408T A23403G C25433T

EPI_ISL_432893
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB972/2020
 C241T C3037T T10636C C14408T A23403G GGG28881AAC

EPI_ISL_432894
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB973/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_433066
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10F98D/2020
 C241T C3037T C10440T C14408T A23403G GGG28881AAC

EPI_ISL_433636
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1633/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_433640
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433646
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433649
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5646T C14408T G15438T A20268G A23403G C26270T C28367T C28708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433651
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28621A GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433652
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16338T A23403G C27046T GGG28881AAC CCACGCGGAGTACGAT29738- G29778A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433653
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433656
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433657
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C5392T C27874T G29587A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_433706
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7820D/2020
 C241T C534T C3037T A10159G C14408T C19170T G19509A A23403G GGG28881AAC A29776G A29818G A29824G

EPI_ISL_433707
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7822B/2020
 C241T C3037T C9286T C14408T C16289T A23403G G25429T

EPI_ISL_433712
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-782B2/2020
 C241T C313T C3037T C14408T A23403G G28086T GGG28881AAC

EPI_ISL_433714
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-782EF/2020
 ATG1605- A29657T

EPI_ISL_433721
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78355/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433728
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-783DD/2020
 A1260T G11083T C14805T C23707T G26144T A29020G

EPI_ISL_433729
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-783EC/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_433730
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-783FB/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433731
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78407/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433732
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78416/2020
 A2480G C2558T G7393T G10958T G11083T C14805T C21639T C25513T G26144T

EPI_ISL_433734
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78452/2020
 C241T C3037T G14197T C14408T A23403G GGG28881AAC

EPI_ISL_433736
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78470/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433745
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78531/2020
 C241T C3037T C14408T T15460C A23403G G26211T GGG28881AAC

EPI_ISL_433750
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7858C/2020
 C241T C3037T C6926T C14408T T15336C C19170T G19509A A23403G T25272C GGG28881AAC

EPI_ISL_433752
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-785AA/2020
 C241T C534T C3037T A10159G C14408T C19170T G19509A A23403G GGG28881AAC A29776G A29818G A29824G

EPI_ISL_433757
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7862F/2020
 C241T C3037T G11222T C14408T T18083C C21707T A23403G GGG28881AAC

EPI_ISL_433758
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7864D/2020
 C241T C3037T C14408T C21058T A23403G GGG28881AAC

EPI_ISL_433762
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-786A7/2020
 C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_433764
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-786E3/2020
 C241T C3037T C3903T C14408T A23403G C25460T G28086T GGG28881AAC

EPI_ISL_433765
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7870E/2020
 C241T C3037T T3502A C9438T G10262A C14408T T19839C C22995T A23403G A27669G GGG28881AAC

EPI_ISL_433770
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78786/2020
 C241T C635T C3037T C11824T C14408T A23403G C25350T

EPI_ISL_433771
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-787A4/2020
 C241T C3037T C14408T G16528T A23403G GGG28881AAC

EPI_ISL_433842
 2020-04-05 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AB2E/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_434064 MT632893
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S304/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434087 MT632886
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S327/2020
 C8782T G15406A C17010T C17747T A17858G C18060T T28144C

EPI_ISL_434105 MT632843
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S345/2020
 T13C C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_434220 MT632937
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S460/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434228 MT632984
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S468/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434229 MT632940
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S469/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434230 MT632962
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S470/2020
 C241T C1059T C3037T C14408T C22713T A23403G G25563T

EPI_ISL_434232 MT632825
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S472/2020
 C241T C3037T C14408T G16813A A23403G GGG28881AAC T29867G

EPI_ISL_434237 MT632987
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S477/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_434240 MT632905
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S480/2020
 C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A

EPI_ISL_434243 MT632971
 2020-04-05 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S483/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_436424
 2020-04-05 2020-05-06
 India hCoV-19/India/NCDC-3163/2020
 T76W G2081K T2087Y C2091Y C2094Y C6310A C6312A G12355K G12685T G12859R C13730T C17456Y A17553R C19524T C22120S C23929T AG24389MS A26973R C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436425
 2020-04-05 2020-05-06
 India hCoV-19/India/NCDC-3170/2020
 C1707T C1912T C6310A C6312A T6457Y G11083T C13730T C19524T C23929T AG24389MS G26709R C28311T C29614T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_436426
 2020-04-05 2020-05-06
 India hCoV-19/India/NCDC-3175/2020
 T4941Y C6310A C6312A C7600T T8022K A8026W G11083T G12685T C13730T A16355G C19524T G19967R G22289T T22515Y C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436428
 2020-04-05 2020-05-06
 India hCoV-19/India/NCDC-3181/2020
 C4900Y C6312A T8022K G11083T C13730T T16232W A16281R T18690K C23929T G24056R AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436429
 2020-04-05 2020-05-06
 India hCoV-19/India/NCDC-3190/2020
 G458R C7600Y T8022K A8026W T8586W G9471S G12315K C12420Y C13730T A13853W A15435R G18368K T19989K C23929T AG24389MS C28311Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436431
 2020-04-05 2020-05-06
 India hCoV-19/India/NCDC-3230/2020
 C1059Y C1707Y T4941Y C6310M C6312A G11083T C13730T C19524T C23929T AG24389MS T24622Y C28311T A28676M TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436433
 2020-04-05 2020-05-06
 India hCoV-19/India/NCDC-3271/2020
 G1820A C1887Y A1966R C6310A C6312A C7573Y T8022K A8026W G9471S G11083T T11515W C13730T C19524T A20935R C23929T T24886Y C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436637 MT706449
 2020-04-05 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4117G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436959 MT446359
 2020-04-05 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-092/2020
 C241T C1059T C3037T G8867A C10319T A11268G C14408T A23403G G25563T C27964T

EPI_ISL_437054 MT449646
 2020-04-05 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1054/2020
 ATTAAA1- AAGTCATTT686- C10277T T15922Y AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_437087 MT449678
 2020-04-05 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1087/2020
 A1- A14940G T15922Y C16045T

EPI_ISL_437088 MT449679
 2020-04-05 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1088/2020
 ATTAAAGGTTT1- G491A A14940G T15922Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_437213
 2020-04-05 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0012/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437290
 2020-04-05 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0099/2020
 C241T C3037T C4543T C14408T A23403G G25049T

EPI_ISL_437365
 2020-04-05 2020-05-08
 United States hCoV-19/USA/MN-MDH-372/2020
 A1- C241T C1059T C3037T C5878T G10870T C14408T A23403G G25563T A25859G C29149T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_437691
 2020-04-05 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah124/2020
 C241T G2369A C3037T A12533G C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437692
 2020-04-05 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah126/2020
 C241T C3037T A5421G C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437693
 2020-04-05 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah138/2020
 C241T C3037T T7919C C14408T C17104T C18877T A23403G G25563T C26735T C29719A

EPI_ISL_437694
 2020-04-05 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah139/2020
 C241T C3037T G14122T C14408T C18877T T19984C A23403G G25563T

EPI_ISL_437695
 2020-04-05 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah142/2020
 C241T C3037T C14408T C18877T A21194G A23403G G25563T C26735T G29543C

EPI_ISL_437839 MT461639
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6478/2020
 TAAAGGTTTATA3- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A -29904AAAAAAAAAAAA

EPI_ISL_437843 MT461643
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T T334C C8782T A13198G C17747T A17858G C18060T T27384C T28144C GG29861AA G29864A TG29867AA C29870A

EPI_ISL_437844 MT461644
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6485/2020
 ATTAAAGGTT1- AACC30CTTT C36T C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A GG29861AA G29864A TG29867AA C29870A

EPI_ISL_437852 MT461649
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-6504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C36T C241T C313T C3037T C3096T C14408T C20320T A23403G C25904T GGG28881AAC CAGTG29762- CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_437856 MT461653
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6526/2020
 ATTAAA1- AAC34TTT C241T C3037T C14408T A22215T A23403G AA29902-

EPI_ISL_437857 MT461654
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6527/2020
 ATTAAAGGTTTAT1- A31T AAC34TTT A2274C C8782T C17747T A17858G C18060T T18345C T23010C T23427C C25231T T28144C -29904AAAAAAAAAAA

EPI_ISL_437858 MT461655
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C3037T C14408T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437863 MT461660
 2020-04-05 2020-05-11
 United States SARS-CoV-2/human/USA/WA-UW-6559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ACC35TTH C241T G680A C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_438123
 2020-04-05 2020-05-12
 Austria hCoV-19/Austria/CeMM0360/2020
 C241T C3037T C14408T T22521K A23403G A23687R C24621T A26269M C27046T GGG28881AAC AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_438127
 2020-04-05 2020-05-12
 Austria hCoV-19/Austria/CeMM0364/2020
 C241T C3037T C12073T C14408T T22521K A23403G C24642T C27046T G28395T GGG28881AAC AAAA29900-

EPI_ISL_441695
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7D5B4/2020
 ATTAAAG1- G1440A G2891A A6173G A27669G C28887T AAAAAAAAAAAAAAAA29888-

EPI_ISL_441735
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7D9C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C7851T G11083T G13004T G13627T C14805T C15105T C15540T G26144T A28338G G29348T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_442048
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7C7A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G860A A2480G T2533A C2558T G11083T C14805T G21800T T25202K G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_442059
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7D059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C934T C3037T C14408T A23403G A24817C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442064
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7CAA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7231T C14408T A23403G G23873T T25202K GGG28881AAC

EPI_ISL_442121
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7CB77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7444G A11875G C14408T G14773A C19488T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_442126
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7BE33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C11379T C14408T A23403G T25202K GGG28881AAC AAAAA29899-

EPI_ISL_442134
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7BDEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13335T C14408T A23403G GGG28881AAC AAAAA29899-

EPI_ISL_442170
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7B853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16206T A23403G GGG28881AAC

EPI_ISL_442188
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7CB95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4180T C14408T C19488T G22484T A23403G T25202K GGG28881AAC AAAAAAA29897-

EPI_ISL_442254
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7CE50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_442641
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/BRIS-1235BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- TGGTTG519- A3917G C8782T T9477A C14805T T19517C G25979T C27219T T28144C C28657T C28863T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442719
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/BRIS-123103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_442736
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/BRIS-123051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19402T A23403G C28606T GGG28881AAC

EPI_ISL_442754
 2020-04-05 2020-05-12
 United Kingdom hCoV-19/England/BRIS-1232B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_443183
 2020-04-05 2020-05-12
 United States hCoV-19/USA/MN-UMGC-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4185T A6228G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_444495
 2020-04-05 2020-05-13
 Canada hCoV-19/Canada/QC_AA3/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_444857
 2020-04-05 2020-05-14
 Denmark hCoV-19/Denmark/ALAB-SSI-1393/2020
 C241T C3037T G11083T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_444972
 2020-04-05 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH6819/2020
 C241T C3037T G11083T C14408T A20268G A23403G C23430T

EPI_ISL_445175 MT474132
 2020-04-05 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1127/2020
 C241T C3037T C4540T G4904T G5206T C14408T G14653K A23403R C24138T C25350T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_445176 MT474133
 2020-04-05 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1128/2020
 ATTAAAG1- C241T C3037T C14408T A23403R G25244T A28858G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_445230
 2020-04-05 2020-05-15
 Sweden hCoV-19/Sweden/20-07044/2020
 C241T C1059T C3037T G3259T C14408T T23042C A23403G G24368T G25563T

EPI_ISL_445370
 2020-04-05 2020-05-15
 Chile hCoV-19/Chile/Santiago_74/2020
 AT1GA C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GGA29861TAT TG29867CC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_445377
 2020-04-05 2020-05-15
 Chile hCoV-19/Chile/Santiago_80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C6573T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445541
 2020-04-05 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A246/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_445571
 2020-04-05 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A49B/2020
 C241T C3037T T5573C C6380T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_445572
 2020-04-05 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A4AA/2020
 A1- C241T C3037T C14408T A23403G T26512C AAAAAA29898-

EPI_ISL_445589
 2020-04-05 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A5B6/2020
 ATTA1- C241T C3037T C14408T C14786T A23403G GGG28881AAC T29029C

EPI_ISL_445677
 2020-04-05 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2ABD2/2020
 C241T C3037T G4510A T10177C C14408T A23403G

EPI_ISL_445691
 2020-04-05 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2ACDF/2020
 C241T C3037T C6543Y C6990T C10834Y C14408T A23403G

EPI_ISL_445698
 2020-04-05 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2AD54/2020
 ATTA1- C241T C3037T C14408T C14741T A23403G T24923C

EPI_ISL_447810
 2020-04-05 2020-05-18
 Colombia hCoV-19/Colombia/GVI-98011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C11916T C14408T C19018T T19632C A23403G G25563T G25641T A26708G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447812
 2020-04-05 2020-05-18
 Colombia hCoV-19/Colombia/GVI-98087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C14408T C18877T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_447813
 2020-04-05 2020-05-18
 Colombia hCoV-19/Colombia/GVI-98290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T A10985G C14408T G14785A C18877T A23403G G25563T G27463T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_448118
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1584/2020
 ATG1605- C12710T C16073T C28854T

EPI_ISL_448120
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1623/2020
 C241T C843T C3037T C14408T C16289T A23403G T25222C G25429T

EPI_ISL_448121
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1624/2020
 ATG1605- C12710T C28854T

EPI_ISL_448450
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC437/2020
 C241T C3037T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_448453
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC491/2020
 G11083T C14805T C18570T G25769T G26144T G28842T

EPI_ISL_448458
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC534/2020
 C241T C3037T C14408T C19512T A23403G GGG28881AAC

EPI_ISL_448460
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC552/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T G28628C GGG28881AAC

EPI_ISL_448462
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC570/2020
 C241T C3037T C13378T C14408T A23403G GGG28881AAC

EPI_ISL_448468
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC613/2020
 C241T C2416T C3037T C6384T C14408T C14786T T16503C G20578T A23403G G25563T T27810C

EPI_ISL_448476
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC6D7/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448477
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC6F5/2020
 A929G C6027T T6630C G11083T C14805T T18771C G26144T A29879C

EPI_ISL_448478
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC710/2020
 T95K C241T C3037T C14408T G21624T A23403G C23625T GGG28881AAC

EPI_ISL_448480
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC73E/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448483
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC798/2020
 C241T C3037T G12550A C14408T C16362T A23403G GGG28881AAC

EPI_ISL_448485
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC7F2/2020
 A70W C241T C3037T C6723T T9476K C14408T A23403G GGG28881AAC

EPI_ISL_448486
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC81D/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC

EPI_ISL_448487
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC83B/2020
 C241T C1288T G2801A C3037T C6723T C14408T A23403G GGG28881AAC C29837T

EPI_ISL_448490
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC895/2020
 C241T C3037T C9430T C14408T C16289T C18312T A23403G G25429T C27046T

EPI_ISL_448491
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC8D1/2020
 C241T C1288T C3037T C6723T C14408T A23403G GGG28881AAC

EPI_ISL_448500
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC9B0/2020
 C241T C3037T T3982C C5157T C7164T C14408T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_448504
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACA53/2020
 C241T C3037T A10948G C14408T A23403G G26416C C27542T C27549T GGG28881AAC

EPI_ISL_448507
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACADB/2020
 T93K C241T C3037T C6723T C14408T A23403G GGG28881AAC

EPI_ISL_448511
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACB50/2020
 C241T C3037T C14408T G19735T C20031A A20232G A23403G C27046T GGG28881AAC

EPI_ISL_448517
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACBE7/2020
 C241T C3037T A11782G C14408T G22203T A23403G

EPI_ISL_448518
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACC02/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC

EPI_ISL_448519
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACC11/2020
 A2480G C2558T G11083T C14805T T17599A G26144T

EPI_ISL_448521
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACC5D/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T G28628C GGG28881AAC

EPI_ISL_448525
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACCB7/2020
 A22W C241T T1537C C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_448527
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACCD5/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC

EPI_ISL_448530
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD1E/2020
 C241T C3037T T3982C C14408T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_448533
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD5A/2020
 C241T C3037T T3982C C7164T C14408T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_448541
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACE57/2020
 C241T C3037T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_448542
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACE75/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_448545
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACEC0/2020
 C241T C3037T C3267T C6861T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_448546
 2020-04-05 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACEEE/2020
 C241T C3037T C13026T C14408T A23403G GGG28881AAC

EPI_ISL_450178
 2020-04-05 2020-05-20
 United States hCoV-19/USA/LA-SR0324/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_450812
 2020-04-05 2020-05-22
 Sweden hCoV-19/Sweden/20-07041/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T G27382C

EPI_ISL_451169
 2020-04-05 2020-05-23
 Belgium hCoV-19/Belgium/UGent-58/2020
 C241T C3037T G6109A C14408T C18877T A23403G G25563T

EPI_ISL_451170
 2020-04-05 2020-05-23
 Belgium hCoV-19/Belgium/UGent-59/2020
 A187G C241T C3037T T5941C C14408T A23403G G25599T

EPI_ISL_451173
 2020-04-05 2020-05-23
 Belgium hCoV-19/Belgium/UGent-62/2020
 C241T AAGTCATTT686- C3037T C14408T T19839C A23403G C24099T GGG28881AAC

EPI_ISL_452207
 2020-04-05 2020-05-27
 India hCoV-19/India/NIV-7439/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830C

EPI_ISL_452208
 2020-04-05 2020-05-27
 India hCoV-19/India/NIV-7511/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C6312A G11083T C13730T C23929T C28311T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452805 MT558656
 2020-04-05 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T G29868R C29870A

EPI_ISL_452806 MT558657
 2020-04-05 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0229/2020
 ATTAAAGGT1- T10C C241T C3037T C10582T C11747T C14408T C18877T A23403G G25459T G25555T G25563T G28086T C29870A

EPI_ISL_452807 MT558658
 2020-04-05 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0230/2020
 ATTA1- C241T C3037T C14408T C18877T A23403G G25459T G25555T G25563T G28086T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_452808 MT558659
 2020-04-05 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0231/2020
 ATTAAAGGTTTATACC1- C241T C3037T C11747T C14408T C18877T A23403G G25459T G25555T G25563T G28086T

EPI_ISL_453984
 2020-04-05 2020-05-28
 Portugal hCoV-19/Portugal/PT0270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3244T T9230C C12741T C14408T A23403G GGG28881AAC C29659T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_453987
 2020-04-05 2020-05-28
 Portugal hCoV-19/Portugal/PT0273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3244T C12741T C14408T A23403G GGG28881AAC C29659T TACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29760-

EPI_ISL_453988
 2020-04-05 2020-05-28
 Portugal hCoV-19/Portugal/PT0274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C15925T G23401T A23403G GGG28881AAC ATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29792-

EPI_ISL_453989
 2020-04-05 2020-05-28
 Portugal hCoV-19/Portugal/PT0275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C12741T C14408T A19855C A23403G GGG28881AAC C29659T AACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29767-

EPI_ISL_453990
 2020-04-05 2020-05-28
 Portugal hCoV-19/Portugal/PT0276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3244T C12741T C14408T A19855C A23403G GGG28881AAC C29659T AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_453992
 2020-04-05 2020-05-28
 Portugal hCoV-19/Portugal/PT0278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTA1- G11083T G12514T C12778T C14805T T17247C G26144T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_453993
 2020-04-05 2020-05-28
 Portugal hCoV-19/Portugal/PT0279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTA1- G11083T C12778T C14805T T17247C G26144T ATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29752-

EPI_ISL_454401
 2020-04-05 2020-05-28
 United States hCoV-19/USA/PA-MGEL137/2020
 C241T T1918C T2022C C3037T C14408T C15540T C18877T C23230T A23403G C25469T G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454410
 2020-04-05 2020-05-28
 United States hCoV-19/USA/PA-MGEL154/2020
 C241T C1059T C3037T C5869T C14408T A23403G T23485C G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454549
 2020-04-05 2020-05-28
 India hCoV-19/India/NIV-7558/2020
 C2558T C6190T G11083T T13542C C14805T G26144T A29827T G29830T

EPI_ISL_455151
 2020-04-05 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20703T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455152
 2020-04-05 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C16193T A22404T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455203
 2020-04-05 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T C14408T A16179G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455358 MW008587
 2020-04-05 2020-05-29
 United States SARS-CoV-2/human/USA/GA-EHC-136H/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T A23403G G25563T T27553C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455965
 2020-04-05 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10177/2020
 C241T C3037T G11222T C14408T A23403G

EPI_ISL_456348
 2020-04-05 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2051/2020
 C241T C3037T T7438C C14408T A23403G C26882T C29353T

EPI_ISL_456352
 2020-04-05 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2058/2020
 C241T C3037T C4683T C14408T A23403G G24077T

EPI_ISL_456353
 2020-04-05 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2059/2020
 C241T C14408T C16289T T18012C A23403G

EPI_ISL_456376
 2020-04-05 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2097/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C29774T

EPI_ISL_456913
 2020-04-05 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB3105/2020
 C241T C3037T C9223T C14408T A23403G

EPI_ISL_457047
 2020-04-05 2020-06-02
 United Kingdom hCoV-19/England/EXET-1352FC/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457048
 2020-04-05 2020-06-02
 United Kingdom hCoV-19/England/EXET-135308/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457096
 2020-04-05 2020-06-02
 United Kingdom hCoV-19/England/EXET-135775/2020
 C241T C1185T C3037T C14408T C18029T A23403G GGG28881AAC

EPI_ISL_458142
 2020-04-05 2020-06-03
 Brazil hCoV-19/Brazil/AP162966-IEC/2020
 C241T C3037T C6433T C9286T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_458245
 2020-04-05 2020-06-04
 United States hCoV-19/USA/CA-SR0361/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27577T C28651T

EPI_ISL_458250
 2020-04-05 2020-06-04
 United States hCoV-19/USA/CA-SR0367/2020
 C241T A1096G C1420T C3037T C14408T G14874T C18877T A23403G G25563T

EPI_ISL_458252
 2020-04-05 2020-06-04
 United States hCoV-19/USA/CA-SR0369/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_458281
 2020-04-05 2020-06-04
 United States hCoV-19/USA/CA-SR0411/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_459131
 2020-04-05 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173E2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8278C G12070T C14408T T17126C A20268G C20719T G22335T A23403G A27578T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459137
 2020-04-05 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172B9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1045G C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460309 MT520384
 2020-04-05 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00227/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C3040T C14408T A23403G C24096A G25563T C29750T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460341 MT520416
 2020-04-05 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2416T C3037T T8665G C14408T G21824T A23403G G25311T G25563T G26233T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460418 MT520493
 2020-04-05 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00316/2020
 ATTAAA1- C241T C1059T C3037T C14408T C16260T C18555T G21604T A23403G G25563T C27331T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460431 MT520506
 2020-04-05 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T C16260T G21604T A23403G G25563T C28821A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460663
 2020-04-05 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8643C C10681T C14408T G15438T A20268G A23403G G25785T A27403T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460753
 2020-04-05 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T C14408T A16179G C21588T A23403G G25012T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460824
 2020-04-05 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461120
 2020-04-05 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T C26681T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461131
 2020-04-05 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G C28849T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461410
 2020-04-05 2020-06-06
 United States hCoV-19/USA/WA-UW-6585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34HTT C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_461413 MT683407
 2020-04-05 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-6589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_461415
 2020-04-05 2020-06-06
 United States hCoV-19/USA/WA-UW-6591/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_461419 MT683409
 2020-04-05 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-6601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_461421 MT683410
 2020-04-05 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-6605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_461427 MT683397
 2020-04-05 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-4676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- T63C C66T A70T C241T C3037T C14408T A23403G G28812T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_461435 MT683386
 2020-04-05 2020-06-06
 United States SARS-CoV-2/human/USA/CT-UW-5104/2020
 ATTAAA1- C241T C3037T G9431T C14119T C14408T C18877T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_463904
 2020-04-05 2020-06-11
 Canada hCoV-19/Canada/QC_AC6.1/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_463910
 2020-04-05 2020-06-11
 Canada hCoV-19/Canada/QC_AF2/2020
 C241T C1473T C3037T C5986T C14408T C15324T A23403G C25433T C27567T

EPI_ISL_464013
 2020-04-05 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0049/2020
 C8092T C8782T C17747T A17858G C18060T G22801T A24694T T28144C

EPI_ISL_464083
 2020-04-05 2020-06-11
 Belgium hCoV-19/Belgium/rega-0405289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T22092C A23403G G25563T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466219
 2020-04-05 2020-06-11
 United Kingdom hCoV-19/England/20149055204/2020
 C241T C3037T C6336Y G11083T C14408T G19635A A23403G GGG28881AAC

EPI_ISL_466240
 2020-04-05 2020-06-11
 United Kingdom hCoV-19/England/20152067804/2020
 C241T C3037T G3320K G3890K G5294K G5880K G8776K G9460K C14408T G15202T T17835C G18225R A22461R G22800R G22902K A23403G C26947Y T27384Y ATT27579-

EPI_ISL_467456
 2020-04-05 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C16376T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_467460
 2020-04-05 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C16376T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_467466
 2020-04-05 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C16376T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_467467
 2020-04-05 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0113/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C16376T A16561C A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_468501 MT628225
 2020-04-05 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C9180T C14408T A23403G G25563T

EPI_ISL_468535 MT628258
 2020-04-05 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1606/2020
 C241T C1059T C3037T C14408T G20342T A23403G G25563T

EPI_ISL_469129
 2020-04-05 2020-06-17
 Singapore hCoV-19/Singapore/380/2020
 C241T C3037T C8730T C13730T C14408T A23403G G25429T C27416A AAAAAAAAAAAA29892-

EPI_ISL_470497
 2020-04-05 2020-06-18
 United Kingdom hCoV-19/England/CAMB-7BE60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20483T G21800T A23403G G28514T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470532
 2020-04-05 2020-06-18
 United Kingdom hCoV-19/England/CAMB-7CBB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G4185A C9438T G11083T A11590G C14805T T25202K G26144T C29013T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470832
 2020-04-05 2020-06-19
 Australia hCoV-19/Australia/WA14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C4540T ATAGTT6510- C8140T C8782T T9477A C14805T G25979T TCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAGACAGAATGATTGAACTTTCATTAATTGACTTCTATTTGTGCTTTTTAGCCT27614- T28144C C28311T C28657T C28863T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_475121
 2020-04-05 2020-06-23
 Sweden hCoV-19/Sweden/20-08804/2020
 C241T C1059T C3037T T10288A C14408T A23403G G24368T G25563T

EPI_ISL_475152
 2020-04-05 2020-06-23
 Sweden hCoV-19/Sweden/20-50659/2020
 C241T C1059T C3037T C14408T G17790T G21987T A23403G G24368T G25563T

EPI_ISL_475594
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC118/2020
 C241T C1059T C3037T C14408T G15908A A23403G G25563T

EPI_ISL_475595
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC119/2020
 C241T C379A T2310C C5002T G12221A G23351C A23403G A23554G G25563T A26057C C27644T A29658C

EPI_ISL_475597
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC120/2020
 C203T G1296T C1779G G1835T A2396C T9546A C14564T A15992C T18402A A18564C T20694C C23929T G24350T A25531G G25726A C25803T G26393T T26679C C28311T

EPI_ISL_475598
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC121/2020
 C241T C1059T G1942T C3037T C7721A C8251T C11758T C14408T C20767T G21533A A23403G G25563T A26057C C27864A

EPI_ISL_475599
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC122/2020
 C241T C379A C1059T C3037T G11893T C14408T G16707T G19656T A23403G A24922G G25563T C29762G

EPI_ISL_475601
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC124/2020
 C241T C3037T C9541T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_475602
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC125/2020
 C241T C3037T C6541T C14408T A23403G T25430C GGG28881AAC

EPI_ISL_475604
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC127/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475606
 2020-04-05 2020-06-23
 United States hCoV-19/USA/CA-CSMC129/2020
 C241T C1059T A2467C C3037T C14408T A23403G G25563T G26062T

EPI_ISL_475870
 2020-04-05 2020-06-25
 Austria hCoV-19/Austria/CeMM0458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T A28169G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475897
 2020-04-05 2020-06-25
 Austria hCoV-19/Austria/CeMM0532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A22259G A23403G G29759T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476498
 2020-04-05 2020-06-25
 Canada hCoV-19/Canada/QC_AA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476513
 2020-04-05 2020-06-25
 Canada hCoV-19/Canada/QC_AS5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTTATG515- C882T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477818
 2020-04-05 2020-06-30
 United Kingdom hCoV-19/England/CAMB-78768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T GAAAAGCAAGTTGAACAAAAGATCGCTGAGATTCCTAAAGAG3851- C5506T C14408T A20268G A23403G A25670G C26305T C27765T G29734C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_478525
 2020-04-05 2020-06-30
 United Kingdom hCoV-19/England/NORT-283EFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A ATG1605- G9646A C20270T C24642G A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478527
 2020-04-05 2020-06-30
 United Kingdom hCoV-19/England/NORT-283F51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478528
 2020-04-05 2020-06-30
 United Kingdom hCoV-19/England/NORT-283F60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478529
 2020-04-05 2020-06-30
 United Kingdom hCoV-19/England/NORT-283F7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9049T C14408T G15243T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480095
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G26730A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480096
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C3037T C14408T A23403G TTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGAC27554- A28792T GGG28881AAC G29764T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_480097
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480098
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G26730A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480099
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G25996T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480100
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480101
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G25563C G28178T GGG28881AAC C29370T A29534G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480148
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480149
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_480150
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480163
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480189
 2020-04-05 2020-07-01
 Japan hCoV-19/Japan/PG-0531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T G1738T C3037T C4931T C14408T G16221T A17829T A23403G A26530G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480829 MT703996
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0178/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C8389T C14408T A23403G T25237A G25563T G27915A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480830 MT703997
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0179/2020
 ATTAAAGGTTTATACC1- C241T C3037T C8389T C14408T A23403G G25563T G27915A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480831 MT703998
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0180/2020
 AT1- C241T A949G C1059T C1917T C3037T C14408T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480832 MT703999
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0181/2020
 ATT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480833 MT704000
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0182/2020
 ATTAAAGGT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_480834 MT704001
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0183/2020
 AT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T C28732T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_480836 MT704003
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0185/2020
 ATTA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480837 MT704004
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0186/2020
 ATT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_480838 MT704005
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0187/2020
 ATTAAAG1- C241T C1059T C1917T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480839 MT704006
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0188/2020
 ATTA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_480840 MT704007
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0189/2020
 ATTA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480841 MT704008
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0190/2020
 ATT1- C241T C1059T C1917T C3037T C9857T C14408T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480842 MT704009
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0191/2020
 ATTA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480844 MT704011
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0193/2020
 AT1- T490A C3177T T3931C C6040T C8782T G12478A T18736C G20397T C24034T T26729C G28077C T28144C C28896G A29700G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480845 MT704012
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0194/2020
 AT1- C241T C2416T C3037T C8109T C14408T A23403G G25563T G26233T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_480847 MT704014
 2020-04-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0196/2020
 AT1- C241T C1059T C3037T G4136T C13115T C14408T G15243T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481682
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A10S4A10/2020
 C241T C1059T C3037T A12250T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481683
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A31S4A10/2020
 C241T C1059T C3037T G9190T A12634G C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481684
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A34S4A10/2020
 C241T C1059T C3037T A13653G C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481685
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A40S4A10/2020
 C241T C1059T C3037T A12250T C14408T G21641T T22447C A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481686
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A44S2/2020
 C241T C313T C3037T T8278C C12213T C14408T T14655A C17934T A23403G GGG28881AAC T29401C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481687
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A49S4A10/2020
 C241T C1059T C3037T A12634G C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481688
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A4S4A10/2020
 C241T C1059T C3037T A11983G C14408T A23403G G24368T G25563T A29683G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481689
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A55S2/2020
 C241T C1059T C3037T G7312T C14408T A23403G A23436G G24368T G24751T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481690
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A57S2/2020
 C241T C3037T C6401T C14408T A23403G G28827A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481691
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A57S4A10/2020
 C241T C620T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481692
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A71S4A10/2020
 C241T C3037T C6541T C14408T G17964A G19525A A23403G C23575T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481693
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5A81S4A10/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481707
 2020-04-05 2020-07-03
 Finland hCoV-19/Finland/5S54S2/2020
 C241T C1059T C3037T C14408T A18153G A23403G G24368T G25563T C27406T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481751
 2020-04-05 2020-07-03
 Canada hCoV-19/Canada/NB_260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4006T C14408T A23403G G25563T C28606T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_481752
 2020-04-05 2020-07-03
 Canada hCoV-19/Canada/NB_261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_483562
 2020-04-05 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T G1397A G2246A C9246T G11083T G17632A C28531T T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483716
 2020-04-05 2020-07-08
 Israel hCoV-19/Israel/n14288/2020
 G1440A C1714T G2891A G4444T T10426C C11109T A22803- C23525T C29555T

EPI_ISL_483719
 2020-04-05 2020-07-08
 Israel hCoV-19/Israel/n14291/2020
 C1645- T2314- AG2491- -2513G -4017A C4565T C10369T -10528T G11083T TG13725- G14181T C14805T T17247C C17676T T19225C AAG20712- T21607- TAT22389- T22673C G26144T G26660T A27268- G28917A C29627T

EPI_ISL_487762
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14599T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487816
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T C17069Y C17321Y A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487987
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488784
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-283E72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2091T G11083T C14805T T17247C G26144T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488951
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489007
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9561Y C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489014
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489031
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G188A C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489053
 2020-04-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489889 EPI_ISL_491085
 2020-04-05 2020-07-14
 Romania hCoV-19/Romania/ROSV_569/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G A29827T TGCT29829- CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_492624
 2020-04-05 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FC33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492635
 2020-04-05 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FC42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2189T C2416T C3037T C14408T C14786T G20578T G22899T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492638
 2020-04-05 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FC24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A3569R C20270T C26735T C26801T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492809
 2020-04-05 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123D4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13501T C14408T A20268G A23403G C29545T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494404
 2020-04-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1161/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494405
 2020-04-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1162/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494406
 2020-04-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494407
 2020-04-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1165/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C4540T G4904T G5206T A6659G C14408T A23403G C24138T C25350T

EPI_ISL_499278
 2020-04-05 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1DA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5340T T9642G C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499288
 2020-04-05 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1E84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499294
 2020-04-05 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1EFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T C9491T G11083T C11563T C14805T C18568T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499296
 2020-04-05 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1F18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17410T C18788T T19839C G21830C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499428
 2020-04-05 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1692FF/2020
 ATTAAAGGTTTATACCTTC1- C241T A1547W C3037T C6990T C14408T A23403G C29200T AA29902-

EPI_ISL_500306
 2020-04-05 2020-07-28
 Spain hCoV-19/Spain/COV004242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T G17144A A23403G C24921T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_500624
 2020-04-05 2020-07-29
 Australia hCoV-19/Australia/NSW2131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1302T C1884T C3037T C14408T A23403G G25563T C28775T C28887T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500625
 2020-04-05 2020-07-29
 Australia hCoV-19/Australia/NSW2132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A20577G A23403G C26681T C27903T C28854T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507019 MT820470
 2020-04-05 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C12815T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508132
 2020-04-05 2020-08-04
 Australia hCoV-19/Australia/SAP441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C20762T C21575T A23403G GGG28881AAC

EPI_ISL_508982
 2020-04-05 2020-08-04
 France hCoV-19/France/ARA20073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C11130T C14408T A23403G G25563T C28807T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508983
 2020-04-05 2020-08-04
 France hCoV-19/France/ARA20154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C241T C1059T C3037T C14408T G14772T C18322T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508984
 2020-04-05 2020-08-04
 France hCoV-19/France/ARA20193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C14408T C15324T A23403G G28001T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_508985
 2020-04-05 2020-08-04
 France hCoV-19/France/ARA20254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- C241T C3037T C14408T T19839C A23403G G25552T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_511713
 2020-04-05 2020-08-08
 Portugal hCoV-19/Portugal/PT1167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511714
 2020-04-05 2020-08-08
 Portugal hCoV-19/Portugal/PT1168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C6312A G11083T C12439T C13730T C23929T T23986C C28311T G28368A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511715
 2020-04-05 2020-08-08
 Portugal hCoV-19/Portugal/PT1169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511901
 2020-04-05 2020-08-10
 India hCoV-19/India/IK8/2020
 C7945T C8782T G22468T T28144C G28878A G29742A G29868A

EPI_ISL_513165
 2020-04-05 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH516/2020
 C241T C3037T C14408T A23403G G25563T C26735T C29095T -29867ACACGACAGCATC

EPI_ISL_513166
 2020-04-05 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH519/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T -29867AGATGC

EPI_ISL_515197
 2020-04-05 2020-08-18
 Canada hCoV-19/Canada/QC_AA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515229
 2020-04-05 2020-08-18
 Canada hCoV-19/Canada/QC_AU3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515230
 2020-04-05 2020-08-18
 Canada hCoV-19/Canada/QC_AU6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517517
 2020-04-05 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D2C3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G G1820A C3037T C5730T G11083T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517519
 2020-04-05 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D2C6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_520731
 2020-04-05 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920643384/2020
 C8782T G11230T C11563T T28144C G28167A G28878A G29742A

EPI_ISL_522767 MT973426
 2020-04-05 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C4540T A4624G C8782T T9477A C14805T G25979T G26062T T28144C C28311T C28657T C28863T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_524572
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-173043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524640
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/England/LOND-126085C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2563G G11083T C14805T C16887T C23707T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524691
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/England/LOND-12607C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C8290T C14408T A23403G G25647T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524692
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/England/LOND-126082F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6927Y C14352T C14408T G17523T C21910T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524698
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524699
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/England/LOND-126086B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4832T C14408T A23403G T23849C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524700
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/England/LOND-12607E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y C3037Y T10942W G11083K G11634K C14408Y C14786Y C14805Y A19515R A23403R G26144K G28842K GGG28881RRS C29013Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524710
 2020-04-05 2020-08-28
 United Kingdom hCoV-19/England/LOND-126079B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11537G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525653
 2020-04-05 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-38698-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1420T C1684T A2165G C3037T G13425A C14408T A23403G G25563T G29711T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_525659
 2020-04-05 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-41107-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C4965T C10833T C14408T C18131T A23403G G25563T C29028T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_527055
 2020-04-05 2020-09-03
 Australia hCoV-19/Australia/NSW2562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527056
 2020-04-05 2020-09-03
 Australia hCoV-19/Australia/NSW2563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527710
 2020-04-05 2020-09-04
 United States hCoV-19/USA/MN-CDC-6495/2020
 C241T C3037T C14408T C21707T A23403G A26530G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_530057
 2020-04-05 2020-09-10
 Spain hCoV-19/Spain/MD-LP54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8175T C14408T C18828T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530219 MT997741
 2020-04-05 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1623/2020
 ATTAAAGGTTT1- C241T C1059T G1463A C3037T G7557A C8818T C14408T A23403G G25563T C29803T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530237
 2020-04-05 2020-09-11
 Australia hCoV-19/Australia/QLD974/2020/P1
 ATTA1- T10G C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_534811
 2020-04-05 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2D33/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_534901
 2020-04-05 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3B29/2020
 C241T C2142T C3037T C14408T C18814T C19170T G19509A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536414
 2020-04-05 2020-09-16
 Singapore hCoV-19/Singapore/873/2020
 ATTAAAGG1- C6310A C6312A A9419G G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_537296
 2020-04-05 2020-09-16
 Spain hCoV-19/Spain/CL-CSIC-97006149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T T6294C T6971C G9929A C14408T A15325G G15556R A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537301
 2020-04-05 2020-09-16
 Spain hCoV-19/Spain/CL-CSIC-97006154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T T6294C G9929A C14408T A15325G A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537313
 2020-04-05 2020-09-16
 Spain hCoV-19/Spain/CL-CSIC-97006166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1912Y C3037T T6294C G9929A C14408T A15325G A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537724
 2020-04-05 2020-09-16
 Spain hCoV-19/Spain/CN-CSIC-97006519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T AAGTCATTT686- T1147Y C3037T C14408T T18209C A20268G A23403G A27675C G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538369
 2020-04-05 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T T4537C C8047T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538370
 2020-04-05 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538478
 2020-04-05 2020-09-17
 Singapore hCoV-19/Singapore/944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538479
 2020-04-05 2020-09-17
 Singapore hCoV-19/Singapore/945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3261T C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538804
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA3A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538807
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA1A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3486T C14408T C18657T C19029T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538827
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA26A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T G21724T C22326T A23403G G23587C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538897
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13115Y C14408T C18981T G21724T C22326T A23403G G23587C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538905
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820R C3037T C14408T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538926
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA25B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538952
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA76B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4795T C8832Y A10505G C10507T C12623T T13678C C14408T C21997Y A23403G C27046T GGG28881AAC A28910C C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538958
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA75C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T C14688T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539020
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8CB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5284T C6027T A10236G G11083T C14805T T17247C G22319A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539026
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C6449T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539043
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8F65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6445T T10696Y G10846A G11083T C14805T T17247C C20132T G20274T G25742A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539071
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8F56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G A24129R C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539084
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A90AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C6449T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539093
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8FB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C6449T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539108
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8FDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539128
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8C04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1778C C3037T C3990T C8389T G10805A C14408T A23403G C23453T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539135
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8CAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4096C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539198
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A93C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9157Y C14408T T15522C A17039G T17835C A23403G C23481Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539212
 2020-04-05 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A926B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C6449T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539300
 2020-04-05 2020-09-17
 Belgium hCoV-19/env/Belgium/VAN-93030-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T10933C G11083T A23403G GGG28881AAC G29587T G29751K TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_539301
 2020-04-05 2020-09-17
 Belgium hCoV-19/env/Belgium/VAN-93030-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29538-

EPI_ISL_540431 MW023390
 2020-04-05 2020-09-21
 United States SARS-CoV-2/human/USA/IN-CDC-0821/2020
 C241T C3037T C14408T G21123K A23403G G26158T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_541351
 2020-04-05 2020-09-22
 Brazil hCoV-19/Brazil/RJ-1870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- A187G C241T C3037T C14408T A23403G TCTCTA25707- GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541848
 2020-04-05 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr11/2020
 A1- C241T C3037T C14408T A23403G C23575T G23587C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_541849
 2020-04-05 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr12/2020
 A1- A2810G C15324T T21644C C29303T AAAAA29899-

EPI_ISL_541850
 2020-04-05 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr14/2020
 ATTAA1- A2810G C15324T T21644C C29303T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_541851
 2020-04-05 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr17/2020
 A1- A2810G C15324T T21644C C29303T C29421T AAAAAAAAAAAAAA29890-

EPI_ISL_542495
 2020-04-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1230G C3037T G10106T C11916T C14408T A23403G G25563T G28198T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542498
 2020-04-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3685A C10319T C14408T C17123T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542500
 2020-04-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12312T C14408T A18082G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542502
 2020-04-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T A2404G C3037T A6677G C10969T C11916T C14408T A14463G C18998T A20553G A23403G G25563T C25916T G29540A G29587A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_542507
 2020-04-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3471T C10377T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542510
 2020-04-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G18534A A23403G G25563T T27384C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542521
 2020-04-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3784T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544360
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544392
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544398
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544406
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544407
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544408
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544409
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544415
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544424
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544656
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2808A C3037T C14408T A23403G G25563T A26433G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545855
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545868
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3901A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545878
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18055A G19525T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545879
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C20698T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545883
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11866T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545884
 2020-04-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549006
 2020-04-05 2020-09-28
 Belgium hCoV-19/env/Belgium/VBR-93034-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A11839G C14408T A23403G GGG28881AAC ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_549007
 2020-04-05 2020-09-28
 Belgium hCoV-19/env/Belgium/VOV-93032-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C19170T G19509A T19839C ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_560756
 2020-04-05 2020-09-29
 United States hCoV-19/USA/MN-MDH-1669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C29269T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_560757
 2020-04-05 2020-09-29
 United States hCoV-19/USA/MN-MDH-1670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C21707T A23403G A26530G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_560758
 2020-04-05 2020-09-29
 United States hCoV-19/USA/MN-MDH-1671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_569524
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C7843T G8371T C14408T A23403G G25563T G25909T C28399T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569525
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C9886T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569526
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T T1666C C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569527
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C6330T G8371T C14408T A23403G G25563T ATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29725-

EPI_ISL_569528
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569529
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T G11083T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569530
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T G29422T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569531
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T G19969T A23403G G25563T G26718T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569532
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C3984T G8371T C14408T A23403G G25166C G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569533
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C7267T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569534
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569535
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2189T C3037T G4105T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569536
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T T2578C C3037T C6401T C13105T C13458T C14408T C20946T A23403G G25563T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_569537
 2020-04-05 2020-10-02
 France hCoV-19/France/IHU-0473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C203T C241T C2416T C3037T G8371T C14408T C14877T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT810631
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1161-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810632
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1162-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810633
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1164-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810634
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1165-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T A6659G C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810987
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0367-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1096G C1420T C3037T C14408T G14874T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810989
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0369-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811017
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0411-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811745
 2020-04-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0324-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873163
 2020-04-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00178/2020
 C241T C2416T C3037T T6394G C14408T A23403G G25563T G26233T

MT873409
 2020-04-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00177/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT967966
 2020-04-05 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6495/2020
 C241T C3037T C14408T C21707T A23403G A26530G AAAAAAAAAAAAAAAAAAAAA29883-

NMDC60013155
 2020-04-05 2020-06-01
 China hCoV-19/Guangzhou/ID146/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C14408T C15324T C19524T A23403G G29175A G29868A

EPI_ISL_418624
 2020-04-06 2020-03-30
 Belgium hCoV-19/Belgium/ULG-6972/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_420544
 2020-04-06 2020-04-06
 India hCoV-19/India/2020763/2020
 C241T C3037T C4809T C14408T A23403G

EPI_ISL_420546
 2020-04-06 2020-04-06
 India hCoV-19/India/2020770/2020
 A1- C241T C3037T C4809T C14408T A23403G

EPI_ISL_420548
 2020-04-06 2020-04-06
 India hCoV-19/India/2020772/2020
 ATTA1- C241T C3037T C4809T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_420550
 2020-04-06 2020-04-06
 India hCoV-19/India/2020773/2020
 AT1- C241T C3037T C4809T C14408T A23403G AAAAAAAAAAAAAAA29889-

EPI_ISL_420552
 2020-04-06 2020-04-06
 India hCoV-19/India/2020777/2020
 C241T C3037T C4809T C14408T A23403G AAAAAAAAAAA29893-

EPI_ISL_420554
 2020-04-06 2020-04-06
 India hCoV-19/India/2020781/2020
 ATTAAAGGTTT1- C241T C3037T C4809T C14408T A23403G A29885G AAAAAAAAAA29894-

EPI_ISL_420556
 2020-04-06 2020-04-06
 India hCoV-19/India/2020c32/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_422463
 2020-04-06 2020-04-10
 United States hCoV-19/USA/WI-GMF-00588/2020
 C241T C1059T C3037T C11224T C14408T C15654T A23403G G25563T

EPI_ISL_424629
 2020-04-06 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10066/2020
 C66T C241T C3037T C7851T C14408T A23403G GGG28881AAC

EPI_ISL_424636
 2020-04-06 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10068/2020
 C241T G1487A C3037T C12452T C14408T C20132T A23403G GGG28881AAC

EPI_ISL_424637
 2020-04-06 2020-04-13
 Belgium hCoV-19/Belgium/ULG-10078/2020
 C241T C1059T C3037T C14408T A23403G C23679T G25563T G28857A

EPI_ISL_426159
 2020-04-06 2020-04-15
 United States hCoV-19/USA/WI-GMF-00986/2020
 C241T C1059T C3037T C6781T C11224T C14408T C15654T A23403G G25563T

EPI_ISL_426161
 2020-04-06 2020-04-15
 United States hCoV-19/USA/WI-GMF-00928/2020
 C241T A739G C1059T C2933T C3037T C9866T C12400T C14408T A14747G A20755C A23403G G25563T

EPI_ISL_426627
 2020-04-06 2020-04-17
 United States hCoV-19/USA/LA-BIE-096/2020
 C241T C1059T G2528A C3037T C10319T C11674T C14408T G18281T A23403G G25563T C27964T

EPI_ISL_426628
 2020-04-06 2020-04-17
 United States hCoV-19/USA/LA-BIE-097/2020
 C241T G598T C1059T C3037T C9443T T11121C C14408T A23403G G25563T C27964T

EPI_ISL_427133 MT641710
 2020-04-06 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC878/2020
 C1076T G1397A C9491T G11083T C21658T C27964T T28688C C29420T G29742T

EPI_ISL_427134 MT451616
 2020-04-06 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC879/2020
 C1076T G1397A C9491T G11083T C21658T C27964T T28688C C29420T G29742T

EPI_ISL_427135 MT451618
 2020-04-06 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC881/2020
 C241T G1145A C3037T C14408T A23403G G27906T GGG28881AAC

EPI_ISL_427136
 2020-04-06 2020-04-17
 Australia hCoV-19/Australia/VIC883/2020
 C241T C1059T C3037T G4444T GATAATCTT6374- T13006C C14408T A23403G G25563T C25688T

EPI_ISL_427137 MT451619
 2020-04-06 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC884/2020
 C241T C3037T C14408T A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_427139 MT451621
 2020-04-06 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC886/2020
 T490A C3177T C6285T C8782T C15960T T18736C G19684T C24034T C27635T G28077C T28144C A29700G

EPI_ISL_427323
 2020-04-06 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4678S/2020
 C3037T A6248G C14408T A20268G A23403G

EPI_ISL_427351
 2020-04-06 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10100/2020
 C241T A618G C3037T G3994A C5694T C14408T C15324T C18744T A23403G

EPI_ISL_427354
 2020-04-06 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10103/2020
 C241T C2113T C3037T C5144T C7765T C14408T C17690T C18877T A23403G G25563T G29266T

EPI_ISL_427451
 2020-04-06 2020-04-18
 United States hCoV-19/USA/WI-UW-144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T C14408T C18877T A23403G A24862G G25563T A29731T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427459
 2020-04-06 2020-04-18
 United States hCoV-19/USA/WI-UW-152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G25981A G28539T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427630
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC230/2020
 C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T

EPI_ISL_427631
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC231/2020
 C241T G991A C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T G29540A

EPI_ISL_427632
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC232/2020
 C241T C2455T C3037T C10335T C14408T C18877T G23270A A23403G G25563T

EPI_ISL_427633
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC233/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_427634
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC235/2020
 C241T C3037T C6255T C12171T C14408T C18877T A23403G G25563T TA29760-

EPI_ISL_427637
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC238/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_427638
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC239/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_427639
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC240/2020
 C241T C1059T C3037T C7764T C14408T G16365T A23403G G25563T

EPI_ISL_427641
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC242/2020
 C241T C1059T C3037T C14408T C16650A A23403G G25563T

EPI_ISL_427642
 2020-04-06 2020-04-19
 United States hCoV-19/USA/NY-NYUMC234/2020
 C241T C1059T C3037T C6926T C11916T C14408T C18998T A23403G G25563T G27762- G29540A

EPI_ISL_428730
 2020-04-06 2020-04-21
 United States hCoV-19/USA/WI-UW-256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C28674T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428731
 2020-04-06 2020-04-21
 United States hCoV-19/USA/WI-UW-257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428732
 2020-04-06 2020-04-21
 United States hCoV-19/USA/WI-UW-258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3259T G10805A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428777
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC263/2020
 C8078T G10754A G11083T C14805T T15129C T17247C G26144T

EPI_ISL_428778
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC264/2020
 C241T C1059T C3037T C11916T C14408T C18998T T22672C A23403G G25563T G29540A

EPI_ISL_428779
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC265/2020
 C241T C3037T T5593C A10323G C14408T A23403G

EPI_ISL_428780
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC266/2020
 C241T C1059T C3037T A4305G C14408T A23403G G25563T G29392T

EPI_ISL_428781
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC267/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_428783
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC269/2020
 C241T C1059T C1594T C3037T C11916T C11956T C14408T A23403G G25563T

EPI_ISL_428784
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC270/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_428785
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC271/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428786
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC272/2020
 C241T C1059T C3037T C14408T T15539C A23403G G25563T T27384C

EPI_ISL_428787
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC273/2020
 C241T C1059T C3037T C5884T C6449T C10376T G11926A C13487T C14408T C22858T A23403G G25563T

EPI_ISL_428788
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC274/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26447T C29754T

EPI_ISL_428789
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC275/2020
 C241T C1059T C3037T G7560A C10556T C14408T C21221T A23403G G25563T

EPI_ISL_428790
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC276/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_428804
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC290/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_428805
 2020-04-06 2020-04-22
 United States hCoV-19/USA/NY-NYUMC291/2020
 C241T C1059T C3037T C6813T C14408T A23403G G25563T

EPI_ISL_429217
 2020-04-06 2020-04-23
 Switzerland hCoV-19/Switzerland/GE6414/2020
 ATTAAAG1- C241T C3037T A9946G C9979T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_429220
 2020-04-06 2020-04-23
 Switzerland hCoV-19/Switzerland/GE6065/2020
 ATT1- C241T G1599T C3037T C8293T C14408T T18488C A23403G T24739C A26530G

EPI_ISL_429221
 2020-04-06 2020-04-23
 Switzerland hCoV-19/Switzerland/GE6099/2020
 AT1- C241T C3037T T8682C C14408T T19839C A21556G A23403G GGG28881AAC

EPI_ISL_429628 MT375457
 2020-04-06 2020-04-23
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-4645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C4456T A6693G C8782T C14877T C17747T A17858G C18060T T27228A T28144C A29188T -29904AAAAAAAAAAA

EPI_ISL_429629 MT375458
 2020-04-06 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4649/2020
 ATTA1- C241T C1059T C3037T C5694A C6040T G12071A C14408T C18131T C20081T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_429631 MT375460
 2020-04-06 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4695/2020
 ATTAAAGGTTTATACC1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_429632 MT375461
 2020-04-06 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T -29904AAAAAAAAAAAAA

EPI_ISL_429641 MT375470
 2020-04-06 2020-04-23
 United States SARS-CoV-2/human/USA/CT-UW-5038/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C241T C1059T C3037T C14408T C21552T A23403G G25563T T25733G

EPI_ISL_429642 MT375471
 2020-04-06 2020-04-23
 United States SARS-CoV-2/human/USA/CT-UW-5043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C1059T C3037T C6026T C14408T A23403G G25563T C28836T -29904AAAAAAAAA

EPI_ISL_429645 MT375474
 2020-04-06 2020-04-23
 United States SARS-CoV-2/human/USA/CT-UW-5073/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C18877T A23403G G25563T T27810C

EPI_ISL_429848
 2020-04-06 2020-04-24
 United States hCoV-19/USA/WI-GMF-01316/2020
 C241T A739G C1059T C2933T C3037T C9866T C12400T C14408T A14747G A20755C A23403G G25563T

EPI_ISL_429982 MT415905
 2020-04-06 2020-04-24
 United States SARS-CoV-2/human/USA/VA-DCLS-0084/2020
 ATTAAAGG1- C241T C1059T C3037T T3607C C8980T C14408T C14925T G18653T A23403G G25563T

EPI_ISL_430579 MT451733
 2020-04-06 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1080/2020
 C241T C1059T C3037T T8068C C14408T G16221A A23083G A23403G G25563T

EPI_ISL_430597 MT451736
 2020-04-06 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1086/2020
 C241T C3037T T7438C C14408T A23403G C29353T

EPI_ISL_430914 MT412271
 2020-04-06 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5732/2020
 ATTAAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T C26907T G28079T T29867H C29870A -29904AA

EPI_ISL_430918 MT412275
 2020-04-06 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31W C36T G1820A C5784T C8782T C17747T A17858G C18060T C20930T G26730A T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430921 MT412278
 2020-04-06 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-5757/2020
 AT1GA A4T A31T AAC34TTT C241T C1059T C3037T C10851T C14408T G16975T A23403G G25563T

EPI_ISL_432216
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2AF03/2020
 A1- C241T C3037T G10097A C14206Y C14408T C17678T C21575T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_432345
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2ADFA/2020
 AT1- C241T C3037T T3100G G10097A C13584T C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_432570
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/SHEF-CE89D/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_432875
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB910/2020
 C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_432891
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB964/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_432892
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB971/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_432895
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB986/2020
 C241T C313T C3037T T3268C C13046T C14408T A23403G GGG28881AAC

EPI_ISL_432898
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB997/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_432899
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB999/2020
 C241T C3037T C3425T C14408T G17721T A20268G A23403G

EPI_ISL_433374
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1001/2020
 C241T C1377T C3037T C14408T C16289T A23403G G25429T G28077T

EPI_ISL_433375
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1005/2020
 C4467T C8782T C17470T C26088T

EPI_ISL_433376
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1037/2020
 G714A A2480G C2558T G11083T C14805T G26144T

EPI_ISL_433377
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1040/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433378
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1046/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_433379
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1062/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_433380
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1070/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433381
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1071/2020
 C241T C3037T C12923T C14408T A23403G T23590C C25096T C25782T GGG28881AAC

EPI_ISL_433382
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1072/2020
 C241T C3037T A8072G C14408T A23403G GGG28881AAC

EPI_ISL_433383
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1073/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433399
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1109/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433400
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1110/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_433401
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1111/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433402
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1112/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_433403
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1113/2020
 C241T C3037T C6573T C14408T A23403G C25528T G27715T GGG28881AAC

EPI_ISL_433405
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1117/2020
 C241T C3037T C14408T A23403G C23679T C25433T

EPI_ISL_433406
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1118/2020
 C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_433641
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433643
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1652/2020
 C241T C3037T C11003T C14408T A20268G A23403G G29734C

EPI_ISL_433648
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433658
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1751/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_433738
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7849E/2020
 C241T C3037T G10870T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_433742
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-784DA/2020
 C241T C913T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433751
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7859B/2020
 C241T C3037T C14408T A23403G G25429T

EPI_ISL_433755
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-785F5/2020
 C241T C3037T C14408T C21077T A23403G GGG28881AAC

EPI_ISL_433759
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7866B/2020
 G160T C241T C3037T C13862T C14408T T17565C A23403G G26529T C28836T

EPI_ISL_433760
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7867A/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433761
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78689/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_433763
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-786C5/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433767
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7873B/2020
 C241T C3037T C14408T C21077T A23403G T27407C A28381T GGG28881AAC

EPI_ISL_433768
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7874A/2020
 C241T C3037T C5239T C14408T A23403G C27879T GGG28881AAC

EPI_ISL_433780
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78847/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433781
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78865/2020
 A2480G C2558T G4185A C9474T G11083T A11590G C14805T C23271T C24795T G26144T C29013T

EPI_ISL_433782
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78874/2020
 C241T C3037T C14408T C18568T A23403G C25831T GGG28881AAC

EPI_ISL_433783
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78883/2020
 C241T C3037T C14408T G21867T A23403G GGG28881AAC

EPI_ISL_433785
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-788A1/2020
 C241T C3037T C6573T C9474T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_433787
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-788CF/2020
 C241T C3037T C14408T G17014T C18189T A23403G GGG28881AAC

EPI_ISL_433793
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78935/2020
 C241T C3037T C14408T G16206T G19455A A23403G GGG28881AAC

EPI_ISL_433794
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78944/2020
 C241T T1294C C3037T C14408T A23403G G27008T GGG28881AAC -29686C

EPI_ISL_433800
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-789AE/2020
 C241T C1150T C3037T C14408T A20268G C22295T A23403G C25318T G29734C

EPI_ISL_433801
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-789BD/2020
 C8293T G11083T C13458T C14805T T17247C C23315T G26144T

EPI_ISL_433806
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78A05/2020
 C1314T G11083T C11575T C14805T T17247C G26144T T28852C

EPI_ISL_433808
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78A32/2020
 A2480G C2558T G11083T A11090T C13019T C14805T C21575T C23422T G26144T G26959A A28175G C29739T

EPI_ISL_433810
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78A7E/2020
 C241T C2416T C3037T C8655T C14408T G16117T G20578T A23403G G25563T TACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACAC27682-

EPI_ISL_433811
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78A9C/2020
 C241T C3037T C7231T C14408T A23403G G23873T GGG28881AAC

EPI_ISL_433848
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7ABB5/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433862
 2020-04-06 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7ACA3/2020
 G677A ATG1605- A1904G C4940A C5826T C8090T C10789T C28060T

EPI_ISL_434216 MT632770
 2020-04-06 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S456/2020
 C241T C1059T C3037T C14214T C14408T A15426G C18029T C19029T A23403G G25563T C26208T T29410C G29553A

EPI_ISL_434218 MT632777
 2020-04-06 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S458/2020
 C241T C1059T C3037T G4399T C14408T A15426G C18029T C19029T A23403G G25563T T29410C G29553A

EPI_ISL_434221 MT632792
 2020-04-06 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S461/2020
 C241T C1059T C3037T C14408T A15426G C18029T C19029T A23403G G25563T T29410C G29553A

EPI_ISL_434231 MT632769
 2020-04-06 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S471/2020
 C241T C1059T C3037T C14408T A15426G C18029T C18115T G18859T C19029T G19656T A23403G G25563T T29410C G29553A

EPI_ISL_434242 MT632783
 2020-04-06 2020-04-29
 United States SARS-CoV-2/human/USA/WA-S482/2020
 C241T C1059T C3037T C14408T A15426G C18029T C18115T G18859T C19029T A23403G G25563T T29410C G29553A

EPI_ISL_434614 MT429190
 2020-04-06 2020-04-30
 United States SARS-CoV-2/human/USA/WI-UW-268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434615 MT429191
 2020-04-06 2020-04-30
 United States SARS-CoV-2/human/USA/WI-UW-269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1319A G2945A C3037T C8389T C10156T C14408T A23403G A23588T G25563T C27657T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434659
 2020-04-06 2020-04-30
 Sweden hCoV-19/Sweden/20-06908/2020
 C241T C1059T C2388T C3037T C14408T C21727T A23403G G24368T G25563T

EPI_ISL_434660
 2020-04-06 2020-04-30
 Sweden hCoV-19/Sweden/20-06928/2020
 C241T C1059T C3037T C11003G C14408T A23403G G24368T G25563T

EPI_ISL_434663
 2020-04-06 2020-04-30
 Sweden hCoV-19/Sweden/20-07025/2020
 C241T A808T C1059T C3037T C14408T A23403G G24368T G25563T C28887T

EPI_ISL_434664
 2020-04-06 2020-04-30
 Sweden hCoV-19/Sweden/20-07034/2020
 C241T C1059T C3037T C8809T C14408T A23403G G24368T G25563T C29836T

EPI_ISL_435702
 2020-04-06 2020-05-05
 United States hCoV-19/USA/CT-Yale-100/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_436575 MT706389
 2020-04-06 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T T8391C C14937T C20148T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436576 MT706390
 2020-04-06 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3692T A4838G C7420T C14937T C20148T C25916T C26907G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436577 MT706391
 2020-04-06 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1213T T2116A G11083T G17211T G23518A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436579 MT706393
 2020-04-06 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7929G C9195T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436580 MT706394
 2020-04-06 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3692T A4838G C7420T C14937T C20148T C25916T C26907G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436581 MT706395
 2020-04-06 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T C14937T C20148T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436638 MT706450
 2020-04-06 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2809T C4586T C9520T C14790T A16438G A29231G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436939
 2020-04-06 2020-05-07
 United States hCoV-19/USA/LA-BIE-071/2020
 C241T C1059T C3037T C10188T C14408T A23403G G25563T C27964T

EPI_ISL_436944 MT446344
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-076/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_436945 MT446345
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-077/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C25708T C27964T

EPI_ISL_436947 MT446347
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-079/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_436948 MT446348
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-080/2020
 C241T C1059T C3037T A12082G C14408T A23403G G25563T T26320C C27964T

EPI_ISL_436950 MT446350
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-082/2020
 C241T C1059T C2652T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_436952 MT446352
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-084/2020
 C241T C1059T C3037T C10319T A12820G C14408T A23403G G25563T C27964T

EPI_ISL_436953 MT446353
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-085/2020
 C241T C364T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_436957 MT446357
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-089/2020
 C241T C1059T C3037T A4220G C10188T C14408T A23403G T24982C G25563T G27478T C27964T

EPI_ISL_436958 MT446358
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-090/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T G27461T C27964T

EPI_ISL_437051 MT449644
 2020-04-06 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1051/2020
 ATTAAAGG1- T11C G7273A C10277T

EPI_ISL_437203
 2020-04-06 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG7/2020
 C241T C14407T A23403G A26265T A26530G

EPI_ISL_437220
 2020-04-06 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0020/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25587T C27752T G29706T

EPI_ISL_437221
 2020-04-06 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0021/2020
 A187G C241T C3037T T13434C C14408T C14599T C17536T A23403G C29774T

EPI_ISL_437291
 2020-04-06 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0100/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_437366
 2020-04-06 2020-05-08
 United States hCoV-19/USA/MN-MDH-374/2020
 AT1- C8782T C17747T A17858G C18060T A24694T T28144C A28356G G28812T C29870A

EPI_ISL_437393 MT450879
 2020-04-06 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0177/2020
 ATTAAAGGTT1- C241T C1059T C1917T C3037T C14408T C20719T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869T

EPI_ISL_437394 MT450880
 2020-04-06 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0178/2020
 ATTA1- T9W C241T C1059T C1917T C3037T C14408T C20719T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437395 MT450881
 2020-04-06 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1917T C3037T C14408T C20719T A23403G G25563T

EPI_ISL_437396 MT450882
 2020-04-06 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0180/2020
 ATTA1- C241T C1059T C1917T C3037T C14408T C20719T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_437397 MT450883
 2020-04-06 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C14408T C20719T A23403G G25563T C29870M

EPI_ISL_437431 MT450917
 2020-04-06 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0216/2020
 A1- C241T C1059T C1917T C3037T C14408T C20719T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437456
 2020-04-06 2020-05-09
 United States hCoV-19/USA/IN-Lilly-IPB0170-15bc11/2020
 C241T C3037T C12513T C14408T A23403G

EPI_ISL_437457
 2020-04-06 2020-05-09
 United States hCoV-19/USA/IN-Lilly-IPB0170-16bc18/2020
 C241T C3037T T3741G C3903T C5497T C14408T A23403G C26815A C27741T

EPI_ISL_437539
 2020-04-06 2020-05-11
 India hCoV-19/India/S12/2020
 C241T C3037T C13730T C14408T A23403G C29870A

EPI_ISL_437575
 2020-04-06 2020-05-11
 United States hCoV-19/USA/CA-SR0225/2020
 C241T C1288T C3037T C11575T C14408T A20268G A23403G T25556G C28854T

EPI_ISL_437601
 2020-04-06 2020-05-11
 Japan hCoV-19/Japan/Donner1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C21742T A23403G T27730W GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437939
 2020-04-06 2020-05-12
 Austria hCoV-19/Austria/CeMM0067/2020
 C241T C3037T C4002T G10097A C13536T C14408T G15652K T18123Y C19718T C22323T T22521K A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438947
 2020-04-06 2020-05-12
 Japan hCoV-19/Japan/Donner2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C823T C3037T C14408T G23401T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438951
 2020-04-06 2020-05-12
 Japan hCoV-19/Japan/Donner6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C823T C3037T C14408T G23401T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438953
 2020-04-06 2020-05-12
 Japan hCoV-19/Japan/Donner8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C823T C3037T C14408T G23401T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439145
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB1059/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_439672
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LIVE-98F00/2020
 C241T C3037T C13730T C14408T A23403G G25429T

EPI_ISL_439706
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9929D/2020
 C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC

EPI_ISL_441016
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3992/2020
 C241T C3037T C14408T A23403G

EPI_ISL_441017
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D39A1/2020
 C241T C3037T T10135C C14408T A23403G G27281T GGG28881AAC

EPI_ISL_441018
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D39B0/2020
 C241T C3037T A3234G T4946G C14408T A23403G GGG28881AAC

EPI_ISL_441019
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D39CF/2020
 C241T C3037T G4285T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_441020
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D39DE/2020
 C241T C3037T A3069G C4897T C6541T C14408T A20268G C21772T A23403G C28854T

EPI_ISL_441021
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D39FC/2020
 C241T C3037T C14408T A17222G A23403G C26681T GGG28881AAC

EPI_ISL_441022
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A08/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441023
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A17/2020
 C241T C3037T C5784T C14408T A23403G GGG28881AAC

EPI_ISL_441024
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A26/2020
 C241T C3037T T12505C C14408T A23403G C25047T T26307A GGG28881AAC

EPI_ISL_441025
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A35/2020
 C241T AAGTCATTT686- C3037T C14408T C19972T A23403G C25350T

EPI_ISL_441026
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A44/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_441027
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A53/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_441028
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A62/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_441029
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A71/2020
 C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC G29227T

EPI_ISL_441030
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A80/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_441031
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3A9F/2020
 A2480G C2558T G3871T G4444T G11083T A13269G C14805T G26144T

EPI_ISL_441032
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3AAE/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_441033
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3ABD/2020
 C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC G29227T

EPI_ISL_441034
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/LOND-D3ACC/2020
 C241T C3037T C14408T G17964T A23403G A26530G

EPI_ISL_441564
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7CEBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C843T C3037T G8137T C14408T A23403G T25202K GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_441602
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7DF4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5817T C14408T A23403G T25202K GGG28881AAC T29660W

EPI_ISL_441711
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7D745/2020
 AT1- ATG1605- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_441773
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7D97C/2020
 ATTAAAGG1- C241T C2940T C3037T C14408T A23403G C28863T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_441774
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7DAF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1260T G11083T C14805T C23707T G26144T A29020G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442194
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7E058/2020
 ATTA1- C8293T G11083T C13458T C14805T T17247C C23315T T25202K G26144T

EPI_ISL_442208
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7CED8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3787T C3903T C14408T A23403G G27877T G28086T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_442240
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7D3E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C218T C241T C3037T C14408T T15207A T17835C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_442689
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/BRIS-12375C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G11083K C13517T C14408T A23403G C23731T G24867T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442700
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/BRIS-123BE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T C14408T G19300T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442704
 2020-04-06 2020-05-12
 United Kingdom hCoV-19/England/BRIS-123877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2458T C3037T C11308T C14408T A23403G

EPI_ISL_443294
 2020-04-06 2020-05-12
 France hCoV-19/France/B5689/2020
 C241T C3037T C8293T C14408T T18488C A23403G T24739C A26530G AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_444092
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D416C/2020
 C241T C3037T C14408T A23403G G25396T A26530G

EPI_ISL_444093
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D417B/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_444094
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D418A/2020
 C241T C313T C3037T G10105T C14408T A23403G C25904T C27673A GGG28881AAC

EPI_ISL_444095
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4199/2020
 C241T C3037T A3234G T4946G C14408T G19846A A23403G GGG28881AAC

EPI_ISL_444096
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D41A8/2020
 C241T C1059T C3037T C14408T C14931T C17339T A23403G G24368T G25563T

EPI_ISL_444097
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D41B7/2020
 C241T G285A C3037T C14408T A23403G

EPI_ISL_444098
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D41C6/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29315C

EPI_ISL_444099
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D41D5/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_444100
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D41E4/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444101
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D41F3/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_444102
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D420F/2020
 A2480G C2558T C6070T G11083T A12918G C14805T G26144T G29262T

EPI_ISL_444103
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D421E/2020
 G11083T C11102T C14805T C23707T G26144T C26681T G28460A

EPI_ISL_444104
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D422D/2020
 C241T C3037T C6982T C14408T A23403G A26530G

EPI_ISL_444105
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D423C/2020
 C241T C913T C3037T C8326T C14408T A23403G GGG28881AAC

EPI_ISL_444106
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D424B/2020
 C241T C313T C3037T C14408T G19872T A23403G GGG28881AAC

EPI_ISL_444108
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4287/2020
 C241T G677A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444109
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4296/2020
 C203T C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444110
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D42A5/2020
 C241T C3037T C3267T C14408T A23403G AG28877TC GGG28881AAC

EPI_ISL_444111
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D42B4/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_444112
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D42C3/2020
 G11083T C11102T C14805T C23707T G26144T C26681T G28460A

EPI_ISL_444114
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D42E1/2020
 C241T C3037T A3234G T4946G C14408T A23403G GGG28881AAC

EPI_ISL_444116
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D431B/2020
 C241T C3037T T3741C C14408T A23403G GGG28881AAC

EPI_ISL_444117
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D432A/2020
 C241T C3037T C14408T G16852T C19488T A23403G G28329A GGG28881AAC

EPI_ISL_444120
 2020-04-06 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4366/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_444767
 2020-04-06 2020-05-14
 United States hCoV-19/USA/NY-NYUMC650/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_444768
 2020-04-06 2020-05-14
 United States hCoV-19/USA/NY-NYUMC651/2020
 C241T C1059T C3037T T12283C C14408T C16260T A23403G G25563T C28821A

EPI_ISL_444769
 2020-04-06 2020-05-14
 United States hCoV-19/USA/NY-NYUMC652/2020
 C241T C1059T C3037T C14408T G14792T C15763T A23403G G25563T

EPI_ISL_444973
 2020-04-06 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH7280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C14408T A20239T A20268G A23403G G29734C

EPI_ISL_444974
 2020-04-06 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH7458/2020
 C241T C3037T C13426T C14408T A20268G A23403G

EPI_ISL_444976
 2020-04-06 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH7773/2020
 C241T C3037T C8739T C14408T C18744T A20268G A22893G A23403G

EPI_ISL_445369
 2020-04-06 2020-05-15
 Chile hCoV-19/Chile/Santiago_73/2020
 AT1GA CC15MM C241T C3037T T7310Y C14408T C22624T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_445379
 2020-04-06 2020-05-15
 Chile hCoV-19/Chile/Santiago_81/2020
 AT1RW A4W C36Y T76W T78K C241T G1319A C3037T C8389T C14408T A23403G G25563T G27708T G29861T

EPI_ISL_445545
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A282/2020
 AT1- C241T C3037T T3100G G10097A C13584T C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_445553
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A316/2020
 C241T C3037T A6616R C6990T C14408T T18231Y A23403G C29200T

EPI_ISL_445573
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A4B9/2020
 C241T C3037T C14408T C19273Y A23403G C24748Y GGG28881AAC

EPI_ISL_445595
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A61D/2020
 C241T C3037T T4186C G11801A C14408T T19839C C23127T A23403G G25552T GGG28881AAC

EPI_ISL_445650
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A9F6/2020
 ATTA1- C241T G1589R C3037T C14408T A23403G G25429T G29474T G29543K

EPI_ISL_445674
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2ABA5/2020
 ATT1- T202C C1102T G11083T C12870T C14805T T17247C G26144T

EPI_ISL_445675
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2ABB4/2020
 C241T C3037T A9760G G11521T C14408T G15016T A23403G GGG28881AAC C29284T

EPI_ISL_445681
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2AC1B/2020
 ATTAAAGGTTTA1- C241T C3037T A6228G C14408T C21622M A23403G

EPI_ISL_445682
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2AC39/2020
 C241T C3037T C7267T C14408T C14741T A23403G

EPI_ISL_445689
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2ACB1/2020
 AT1- C241T C3037T G11083T C14408T C16289T A23403G C24130T G25429T

EPI_ISL_446193
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2F065/2020
 C241T C3037T C6990T C14408T A23403G

EPI_ISL_446206
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2F144/2020
 ATTA1- C241T C3037T C9344T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_446210
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2F180/2020
 ATTAAAGGTTTATACCT1- C241T C2536T C3037T C14408T G15438T A18890G A20268G A23403G

EPI_ISL_446216
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2F1EA/2020
 C241T C3037T C7945T G10870T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_446222
 2020-04-06 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2F241/2020
 ATTAAAGGTTTATACCTTC1- C241T C1190T C3037T C5817T C12528T C14408T A23403G GGG28881AAC

EPI_ISL_447858
 2020-04-06 2020-05-18
 India hCoV-19/India/CCMB_J812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3686T C6312A G11083T C13730T A21792T C23929T C27213T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447894 MT481934
 2020-04-06 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1143/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C9561T C14408T C17410A A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_448127
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1713/2020
 C241T C3037T C10798A C13862T C14408T C15017T A23403G C28836T

EPI_ISL_448128
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1718/2020
 C241T C3037T C10798A C13862T C14408T G14584A C15017T A23403G C28836T

EPI_ISL_448455
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC4BF/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T G28628C GGG28881AAC

EPI_ISL_448470
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC631/2020
 C241T C313T C3037T C11379T C14408T A23403G G28086T GGG28881AAC

EPI_ISL_448472
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC67D/2020
 C241T C313T C3037T G4109A C8090T C14408T A23403G G25456T G28396T GGG28881AAC

EPI_ISL_448492
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC8FF/2020
 C241T C3037T C14408T A16682G C22993A A23403G GGG28881AAC

EPI_ISL_448493
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC90B/2020
 C241T C3037T C13730T C14408T A23403G G25429T

EPI_ISL_448494
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC91A/2020
 C241T C3037T C14408T C14724T A23403G GGG28881AAC C29722T

EPI_ISL_448496
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC938/2020
 C241T C313T C3037T C3552T G4109A C8090T C14408T A23403G G25456T GGG28881AAC

EPI_ISL_448503
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACA44/2020
 C241T C2416T C3037T C14408T C14786T T16503C G20578T A23403G G25563T T27810C

EPI_ISL_448505
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACA62/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448506
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACA80/2020
 C241T C313T C3037T C11379T C14408T A23403G T24156C G28086T GGG28881AAC

EPI_ISL_448508
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACAEA/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448510
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACB41/2020
 C241T C832T C3037T G11083T C14408T C19488T C21622T A23403G GGG28881AAC

EPI_ISL_448512
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACB6F/2020
 T77K T85W T8168Y G11083T C14805T C18570T G25769T G26144T G28842T

EPI_ISL_448515
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACBAB/2020
 C241T C3037T C14408T G22201T A23403G C26447T GGG28881AAC

EPI_ISL_448522
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACC6C/2020
 C241T C3037T G10870T C14408T A23403G

EPI_ISL_448526
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACCC6/2020
 C241T G1599T C3037T G5429T C14408T C18788T T19839C T21655K A23403G GGG28881AAC

EPI_ISL_448529
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD0F/2020
 C241T T447G C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448531
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD2D/2020
 C241T C3037T C6723T C8692T C14408T A23403G GGG28881AAC

EPI_ISL_448532
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD4B/2020
 G7743T G9623T G11083T C14267T C14805T T17247C A22115G G26144T

EPI_ISL_448534
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD69/2020
 C241T C3037T A12199G C14408T A23403G GGG28881AAC

EPI_ISL_448535
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACD87/2020
 C241T C3037T C14408T G22201T A23403G C26447T GGG28881AAC

EPI_ISL_448537
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACDA5/2020
 C241T C3037T C6861T C14408T C16915T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_448540
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACE2A/2020
 C241T C3037T C14408T A23403G

EPI_ISL_448551
 2020-04-06 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACFEB/2020
 T1477A A2480G C2558T C9391T G11083T C14805T C22088T G26144T C28292A C28854T

EPI_ISL_449834 MT535505
 2020-04-06 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01598/2020
 A1T C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_449837 MT535508
 2020-04-06 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01607/2020
 C241T T833C C1059T C3037T C14408T A22320G A23403G G25563T C27964T

EPI_ISL_449838 MT535509
 2020-04-06 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01609/2020
 C241T C2416T C3037T C14408T C16568T A23403G G25563T C29870A

EPI_ISL_450176
 2020-04-06 2020-05-20
 United States hCoV-19/USA/LA-SR0322/2020
 C241T C1059T C3037T C9246T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_450188
 2020-04-06 2020-05-20
 Jordan hCoV-19/Jordan/SR-0336/2020
 C8782T C9223T G11230T T28144C G28878A G29742A

EPI_ISL_450734
 2020-04-06 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C338/2020
 C241T C3037T C14408T T23287C A23403G A23870G GGG28881AAC

EPI_ISL_450805 MT507795
 2020-04-06 2020-05-22
 United States SARS-CoV-2/homo sapien/USA/VI-CDC-3884/2020
 C241T C527Y C1059T C3037T A3298W C7728T C9724T C12439T C14408T A23403G G25563T TTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAG27580- C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_450811
 2020-04-06 2020-05-22
 Sweden hCoV-19/Sweden/20-06909/2020
 C241T C1059T C3037T C14408T G20568T A23403G G24368T G25563T T27267C

EPI_ISL_451888 LR824450
 2020-04-06 2020-05-25
 Switzerland 110470
 C241T C2094T C3037T C5284Y C14408T A19334R T22449K C23280Y A23403G C28854T

EPI_ISL_452209
 2020-04-06 2020-05-27
 India hCoV-19/India/NIV-7786/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T AGTGCTATCCCCATG29827- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_452210
 2020-04-06 2020-05-27
 India hCoV-19/India/NIV-7830/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C14408T G23236T A23403G G23593C GGG28881AAC AGTGCTATCCCCATG29827- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_454250
 2020-04-06 2020-05-28
 Portugal hCoV-19/Portugal/PT0526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2370T C3037T A6308G C14408T A22671G A23403G G24102T A28920C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454251
 2020-04-06 2020-05-28
 Portugal hCoV-19/Portugal/PT0527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T689C C3037T C3140T C14408T C21811T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454252
 2020-04-06 2020-05-28
 Portugal hCoV-19/Portugal/PT0528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454253
 2020-04-06 2020-05-28
 Portugal hCoV-19/Portugal/PT0529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4832T C14408T A23403G GGG28881AAC C29205T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454324
 2020-04-06 2020-05-28
 Portugal hCoV-19/Portugal/PT0601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T1116G C2416T C3037T G8371T C14408T A23403G G25563T C25831T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454351
 2020-04-06 2020-05-28
 Portugal hCoV-19/Portugal/PT0628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C10341A C14408T T22963C A23403G A23544T T28678C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454352
 2020-04-06 2020-05-28
 Portugal hCoV-19/Portugal/PT0629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G C26313T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454402
 2020-04-06 2020-05-28
 United States hCoV-19/USA/PA-MGEL140/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455121
 2020-04-06 2020-05-29
 Netherlands hCoV-19/Netherlands/Friesland_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11596T C14408T G23126T A23403G G25606T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455155
 2020-04-06 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455156
 2020-04-06 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T G21296A A23403G C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455157
 2020-04-06 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G24053A G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455232
 2020-04-06 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455235
 2020-04-06 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23709T A24036G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455290
 2020-04-06 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordBrabant_106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455609 MT536176
 2020-04-06 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T A9793G C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455611 MT536178
 2020-04-06 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455615 MT536182
 2020-04-06 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455619 MT536186
 2020-04-06 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455620 MT536187
 2020-04-06 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C106T C241T C1059T C3037T C14408T A23403G G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455623 MT536190
 2020-04-06 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C14408T G21777T A23403G G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456080
 2020-04-06 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9220A C14408T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456081
 2020-04-06 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456088
 2020-04-06 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6319G C14408T C14724T C18060T A23403G T24195C G25088T T26149C GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456356
 2020-04-06 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2065/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_456358
 2020-04-06 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2067/2020
 C241T C3037T C4683T C14408T A23403G G24077T

EPI_ISL_457033
 2020-04-06 2020-06-02
 United Kingdom hCoV-19/England/EXET-13511D/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457063
 2020-04-06 2020-06-02
 United Kingdom hCoV-19/England/EXET-13547E/2020
 ATG1605- G14335T

EPI_ISL_457078
 2020-04-06 2020-06-02
 United Kingdom hCoV-19/England/EXET-13562D/2020
 C241T C3037T C5005T C10156T C14408T A23403G GGG28881AAC

EPI_ISL_457160
 2020-04-06 2020-06-02
 United Kingdom hCoV-19/England/EXET-135D37/2020
 G1440A G2891A C4668T T5521C C7815T A11144C

EPI_ISL_457180
 2020-04-06 2020-06-02
 United Kingdom hCoV-19/England/EXET-135F04/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_457184
 2020-04-06 2020-06-02
 United Kingdom hCoV-19/England/EXET-135F7D/2020
 ATG1605- G14335T

EPI_ISL_458123
 2020-04-06 2020-06-03
 Oman hCoV-19/Oman/205027055/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C8832T G10265A C14408T C16293T C19269T A23403G GGG28881AAC -29814AT A29818T T29820A A29827T TG29829AT T29832C CC29837TG GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_458149
 2020-04-06 2020-06-03
 Brazil hCoV-19/Brazil/MA163069-IEC/2020
 C241T C3037T C4534T C6525T C14408T A18015G A23403G C25710T T27299C GGG28881AAC T29148C

EPI_ISL_458276
 2020-04-06 2020-06-04
 United States hCoV-19/USA/CA-SR0405/2020
 C241T C1059T C3037T A8252G C14408T A23403G G25563T

EPI_ISL_458298
 2020-04-06 2020-06-04
 India hCoV-19/India/CCMB_J714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G1820A A1846T C6312A G11083T G19679T C28311T C29774T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_459096
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172B70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T G7798T A10918M C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459100
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172C8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C3037T C9474Y C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459103
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173D2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12067T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459104
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173B8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C9532Y G11083T C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459115
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173DE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C4755T C14408T A21801C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459116
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173D6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459118
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173D5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7047T C14183T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459120
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173BBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10642T G13812T C14408T C19170T G19509A C21855T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_459124
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173C21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21077T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459134
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172C22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8986M C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459141
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172BF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y C3037Y C4540Y C8782Y T9477W G9856K C12242Y C14408Y C14805Y C18452Y C22879M A23403R G25979K C26029M G27754R T28144Y C28657Y C28863Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459145
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173B60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459151
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172DD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874A C3037T C3411T C3885T A5353G C14408T C17104T A20268G A23403G C28253T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459153
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173C9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459154
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172BAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G G11083T C11344T C14805T T17247C T21033C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459156
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172B8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17278T C19610T A23403G G25429T T26906C G29688T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459157
 2020-04-06 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-172CAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G410T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459984
 2020-04-06 2020-06-05
 Morocco hCoV-19/Morocco/6906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460121 MT520196
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_460132 MT520207
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00687/2020
 ATTAAAGGTTTA1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460147 MT520222
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00242/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460153 MT520228
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00675/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C13730T C14408T A23403G G25429T C28849T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_460162 MT520237
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00691/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T C29503T AAAAAA29898-

EPI_ISL_460173 MT520248
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460187 MT520262
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00690/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460188 MT520263
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00229/2020
 ATTAAAGGTTTATAC1- C84T C241T C1059T C3037T C6730T C14177T C14408T A23403G G25563T C25710T G28960T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460191 MT520266
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00695/2020
 ATTAAA1- G105T C241T C1812T C3037T C14408T C18877T A23403G G25563T C26606T AAAAAAAAAAAAAAAA29888-

EPI_ISL_460213 MT520288
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00247/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460215 MT520290
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A23403G C25916T T27299C T28360C GGG28881AAC T29148C C29769T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460233 MT520308
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00704/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460237 MT520312
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00239/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460257 MT520332
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00688/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T A25759G C26447T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_460268 MT520343
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00699/2020
 ATTAAA1- C241T C2416T C3037T A7130G T10216C C14408T A23403G G25563T G26233T G28337T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460293 MT520368
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00705/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C13130A C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460299 MT520374
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00230/2020
 ATTAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460305 MT520380
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T C21658G A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460325 MT520400
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00262/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C4423T C10207T A12004G C14408T A23403G C29774T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460332 MT520407
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C12357T C14408T A23403G G25563T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_460336 MT520411
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T C16260T G21604T A23403G G25563T C28821A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460345 MT520420
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00231/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460346 MT520421
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00243/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460357 MT520432
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00703/2020
 ATTAAAGGTTTATAC1- C241T C2062T C2416T C3037T C14408T G17988A C18928T G19009T A23403G G25563T G26233T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460358 MT520433
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00701/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460360 MT520435
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460365 MT520440
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00238/2020
 ATTAAAGGTTTATA1- C84T C241T C1059T C3037T C6730T C14408T A23403G G25563T C25710T G28960T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_460373 MT520448
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_460378 MT520453
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00256/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460389 MT520464
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00234/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460403 MT520478
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00694/2020
 ATTAAA1- C241T C3037T C14408T A23403G C25916T T27299C T28360C GGG28881AAC T29148C C29769T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_460404 MT520479
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00257/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C4423T C10207T A12004G C14408T A23403G C29774T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460407 MT520482
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00244/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460414 MT520489
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00689/2020
 ATTAAAGGTTTATACCT1- G160A C241T C2416T C3037T A7130G T10216C C14408T A23403G G25563T G26233T G28337T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460422 MT520497
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00696/2020
 ATTAAA1- C1063T G1658A C5758T C8782T T9477A C14805T G22708T C24748T G25979T C26681T T28144C C28657T C28863T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_460429 MT520504
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00252/2020
 ATTA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_460435 MT520510
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00245/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460450 MT520525
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00233/2020
 ATTAAA1- C241T C1059T C3037T G3892T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460455 MT520530
 2020-04-06 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00250/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C84T C241T C1059T C3037T C6730T C14408T A23403G G25563T C25710T G28960T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460637
 2020-04-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Drenthe_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T C26521T C27644T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460643
 2020-04-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4113T C6555T C14408T C14925T G18281A A20755C A23403G G25563T G25784T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460670
 2020-04-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460825
 2020-04-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C9491T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460930
 2020-04-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T C1594T C3037T C9712T C11109T C14408T C16887T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461032
 2020-04-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461038
 2020-04-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G A11438G C11653T C12115T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461418 MT683408
 2020-04-06 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-6596/2020
 ATTAAAGGTTTAT1- A31T C36T A6693G C8782T C14877T C17747T A17858G C18060T C25433T T28144C C28519T A29188T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_461426
 2020-04-06 2020-06-06
 United States hCoV-19/USA/WA-UW-4659/2020
 ATTA1CACT C36T C241T C1059T C3037T C6040T G13749T C14408T A23403G C24082T G25563T TG29867AA C29870A

EPI_ISL_461428
 2020-04-06 2020-06-06
 United States hCoV-19/USA/WA-UW-4688/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C1929T C5784T A8072G C8782T C17747T A17858G C18060T G26730A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_461429 MT683399
 2020-04-06 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-4690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C17747T A17858G C18060T T28144C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_461440 MT683403
 2020-04-06 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-5738/2020
 ATTAAA1- AAC34TTT C241T C1059T C3037T T14217A C14408T A23403G G24075A G25563T C27005T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_461441
 2020-04-06 2020-06-06
 United States hCoV-19/USA/CT-UW-5765/2020
 ATTAAAGGTTTATAC1- CCCAGGTAACAAAC19- C33T C36T C241T C1059T C3037T G7027A C14408T A23403G G25563T G25634A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_461442 MT683404
 2020-04-06 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-5781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C241T C1059T C3037T G9805A C14408T A23403G G25563T C29870-

EPI_ISL_462252
 2020-04-06 2020-06-08
 Belgium hCoV-19/Belgium/DPR-0406398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6507G C14408T A20999G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462254
 2020-04-06 2020-06-08
 Belgium hCoV-19/Belgium/VNM-0406400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5171T C14408T G21786A A23403G G29009A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462357
 2020-04-06 2020-06-08
 Singapore hCoV-19/Singapore/239/2020
 C6312A C8139T G11083T C13730T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462407
 2020-04-06 2020-06-08
 Singapore hCoV-19/Singapore/289/2020
 A939R C6310A C6312A G8834R G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462419
 2020-04-06 2020-06-08
 Singapore hCoV-19/Singapore/301/2020
 A969G C6310A C6312A G11083T C13730T C19524T C23929T T24796C C28311T AAAAAAAAAAAA29892-

EPI_ISL_462421
 2020-04-06 2020-06-08
 Singapore hCoV-19/Singapore/303/2020
 G260R G2035T C6310A C6312A A8576R G11083T C13730T C19524T C23929T C25047S G27798T C28311T C28758T AAAAAAAAAAAA29892-

EPI_ISL_462428
 2020-04-06 2020-06-08
 Singapore hCoV-19/Singapore/310/2020
 C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_463277 MT585082
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-029/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463278 MT585083
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-030/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463280 MT585085
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-032/2020
 C241T C1059T C3037T C10319T C14408T C20628T A23403G G25563T G25907T C27964T

EPI_ISL_463281 MT585086
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-033/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463289 MT585094
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-041/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25568T C27964T

EPI_ISL_463291 MT585096
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-043/2020
 C241T C1059T C3037T C10319T C14408T C16694T C21638T A23403G G25563T C27964T

EPI_ISL_463294 MT585099
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-046/2020
 C241T C1059T C3037T C14408T A23403G G25563T T26320C C27964T

EPI_ISL_463296 MT585101
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-048/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463299 MT585104
 2020-04-06 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-091/2020
 C241T C1059T C3037T C4321T C10319T C14408T G22344T A23403G G25563T C27964T

EPI_ISL_463906
 2020-04-06 2020-06-11
 Canada hCoV-19/Canada/QC_AE6/2020
 C241T C1059T C1150T C1223T C3037T C4886T C14408T G14829T A23403G A24782G G25563T G27561T C27964T

EPI_ISL_463908
 2020-04-06 2020-06-11
 Canada hCoV-19/Canada/QC_AE9/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_463948
 2020-04-06 2020-06-11
 Canada hCoV-19/Canada/QC_AU9/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_464001
 2020-04-06 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0061/2020
 C241T C313T C1469T C3037T C14408T C14724T A23403G A27965T GGG28881AAC G29781T

EPI_ISL_464047
 2020-04-06 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0036/2020
 C241T C676T C3037T C14408T A23403G T25430C T28130C GGG28881AAC

EPI_ISL_464067
 2020-04-06 2020-06-11
 Belgium hCoV-19/Belgium/MA-0406273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18457T A23403G G25767T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464069
 2020-04-06 2020-06-11
 Belgium hCoV-19/Belgium/WLM-0406275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7267T C7564T T12001A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464072
 2020-04-06 2020-06-11
 Belgium hCoV-19/Belgium/LC-0406278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14980T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464073
 2020-04-06 2020-06-11
 Belgium hCoV-19/Belgium/VSL-0407279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C4002T G10097A C13536T C14408T G18266T G18636T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464079
 2020-04-06 2020-06-11
 Belgium hCoV-19/Belgium/rega-0406285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G11083T C12513T C14805T T17247C G26144T A29598G G29690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466231
 2020-04-06 2020-06-11
 United Kingdom hCoV-19/England/20150041004/2020
 A215T C241T A1677T C3037T G3152A C14408T A23403G GGG28881AAC C29085T T29148C

EPI_ISL_466235
 2020-04-06 2020-06-11
 United Kingdom hCoV-19/England/20152054104/2020
 A2480G C2558T C7011T C8692T C8715T G11083T G11405A C12459Y C14805T G26144T C28869T

EPI_ISL_466246
 2020-04-06 2020-06-11
 United Kingdom hCoV-19/England/20154002504/2020
 C241T G2164A C3037T C11941Y C14408T C22802M A23403G G27506K GGG28881AAC

EPI_ISL_466252
 2020-04-06 2020-06-11
 United Kingdom hCoV-19/England/20154003804/2020
 C241T C3037T C14408T G18972T A23403G C27509Y GGG28881AAC

EPI_ISL_466275
 2020-04-06 2020-06-11
 United Kingdom hCoV-19/England/20154088104/2020
 G6392R T7030C C14805T T17247C G26144T

EPI_ISL_466325
 2020-04-06 2020-06-11
 United Kingdom hCoV-19/England/20156047804/2020
 C241T A2239G C3037T C12025T C14408T C15324T A23403G G28374A C29171T C29870A A29882G

EPI_ISL_467455
 2020-04-06 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C16376T A23403G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_468009
 2020-04-06 2020-06-16
 Australia hCoV-19/Australia/SAP027/2020
 ATTAAAGGT1- C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_468459 MT628187
 2020-04-06 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T898K T3142Y C4499M T5270Y G6694A T12486Y C12973T T13123W T13573W C14119T G28881T G29202S TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_468536 MT628259
 2020-04-06 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1607/2020
 ATT1- C4776T C8782T A16474R C17747T A17858G C18060T C27881Y G28086T T28144C

EPI_ISL_468537 MT628260
 2020-04-06 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1608/2020
 C4776T C8782T C17104T C17747T A17858G C18060T G28086T T28144C

EPI_ISL_468701
 2020-04-06 2020-06-17
 United States hCoV-19/USA/LA-BIE-001/2020
 C241T C1059T C3037T C10319T C14408T C18166T A23403G G25563T C27964T

EPI_ISL_468702
 2020-04-06 2020-06-17
 United States hCoV-19/USA/LA-BIE-002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468703
 2020-04-06 2020-06-17
 United States hCoV-19/USA/LA-BIE-003/2020
 C241T C1059T C3037T C10319T G11083T C14408T A23403G G25563T C27964T

EPI_ISL_468713
 2020-04-06 2020-06-17
 United States hCoV-19/USA/LA-BIE-023/2020
 C241T C1059T C3037T C10188T C14408T A23403G G25563T C27964T

EPI_ISL_468714
 2020-04-06 2020-06-17
 United States hCoV-19/USA/LA-BIE-025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T G613A C1059T C3037T G4399T G12988T C14408T A23403G G25563T C27263T C27964T C29200T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468715
 2020-04-06 2020-06-17
 United States hCoV-19/USA/LA-BIE-026/2020
 C241T T833C C1059T G2202T C3037T C8357T C14408T A23403G G25563T C27964T

EPI_ISL_469105
 2020-04-06 2020-06-17
 Singapore hCoV-19/Singapore/350/2020
 A3523R C6310A C6312A G11083T C13730T C19524T C23929T A27797G C28311T AAAAAAAAAAAA29892-

EPI_ISL_469113
 2020-04-06 2020-06-17
 Singapore hCoV-19/Singapore/358/2020
 C241T C3037T G6894T C14408T T22433Y A22623R A23403G G26589K GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_469114
 2020-04-06 2020-06-17
 Singapore hCoV-19/Singapore/359/2020
 C6310A C6312A C9559Y G11083T C13730T C19524T T22324Y C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469120
 2020-04-06 2020-06-17
 Singapore hCoV-19/Singapore/365/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469274
 2020-04-06 2020-06-18
 Singapore hCoV-19/Singapore/72/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C6310A C6312A G11083T C13730T C19524T C21575Y C23185T C23929T C28311T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_470833
 2020-04-06 2020-06-19
 Australia hCoV-19/Australia/WA15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T A9301G A9409G C14408T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471183
 2020-04-06 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471916
 2020-04-06 2020-06-23
 United Kingdom hCoV-19/England/EXET-136D18/2020
 C241T C3037T G3239T C14408T A23403G GGG28881AAC

EPI_ISL_471929
 2020-04-06 2020-06-23
 United Kingdom hCoV-19/England/EXET-136E9D/2020
 C241T C3037T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_472450
 2020-04-06 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15C1C5/2020
 ATTA1- C241T C1616T C3037T C14408T A23403G GGG28881AAC G29777T

EPI_ISL_473783
 2020-04-06 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB1063/2020
 C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_474260
 2020-04-06 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-2AFA9/2020
 A1- C241T A883C C3037T C14408T C16289T C17550T A23403G G25429T

EPI_ISL_474935
 2020-04-06 2020-06-23
 Spain hCoV-19/Spain/Ogijares-COV003033/2020
 C241T C3037T G4255A C14408T G16537T A20268G A23403G T26301G

EPI_ISL_475153
 2020-04-06 2020-06-23
 Sweden hCoV-19/Sweden/20-50664/2020
 C241T C1059T A1399G C3037T G7936T C14408T G20002T A23403G G25563T

EPI_ISL_475154
 2020-04-06 2020-06-23
 Sweden hCoV-19/Sweden/20-50669/2020
 C241T C1059T A1399G C3037T G7936T C14408T A23403G G25563T G29202T

EPI_ISL_475155
 2020-04-06 2020-06-23
 Sweden hCoV-19/Sweden/20-50673/2020
 C241T C2706T C3037T C14408T A23403G G24858A C26447T GGG28881AAC C28887T

EPI_ISL_475537
 2020-04-06 2020-06-23
 Sweden hCoV-19/Sweden/20-06918/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25455T G25563T

EPI_ISL_475538
 2020-04-06 2020-06-23
 Sweden hCoV-19/Sweden/20-07012/2020
 C241T C3037T C12400T C14408T A19182G T19839C A23403G C24099T GGG28881AAC

EPI_ISL_475565
 2020-04-06 2020-06-23
 Sweden hCoV-19/Sweden/20-06911/2020
 C241T AAGTCATTT686- C1059T C3037T C14178T C14408T ATCCATTTT21975- A23403G G25563T

EPI_ISL_475614
 2020-04-06 2020-06-23
 United States hCoV-19/USA/CA-CSMC136/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T G25906T

EPI_ISL_475616
 2020-04-06 2020-06-23
 United States hCoV-19/USA/CA-CSMC138/2020
 C241T C1059T C3037T C14408T G15908A C16230T A23403G G25563T

EPI_ISL_475621
 2020-04-06 2020-06-23
 United States hCoV-19/USA/CA-CSMC142/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475622
 2020-04-06 2020-06-23
 United States hCoV-19/USA/CA-CSMC143/2020
 C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T

EPI_ISL_475663
 2020-04-06 2020-06-23
 United States hCoV-19/USA/CA-CSMC50/2020
 C241T C3037T G3860T T4711C C14408T A23403G A28032T GGG28881AAC

EPI_ISL_475664
 2020-04-06 2020-06-23
 United States hCoV-19/USA/CA-CSMC51/2020
 C841T C8782T C17747T A17858G C18060T C22313T T27051G T28144C C28708T

EPI_ISL_475665
 2020-04-06 2020-06-23
 United States hCoV-19/USA/CA-CSMC52/2020
 C241T G656T C1059T C3037T C3743T G3980T G12320T G13540T C14408T T15366C T19025A C20767T T22731C A23403G G25563T

EPI_ISL_475806
 2020-04-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C14805T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475808
 2020-04-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3563A C14408T A23403G GGG28881AAC C29296T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475810
 2020-04-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T C14408T T16656A G18859T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475811
 2020-04-06 2020-06-25
 Austria hCoV-19/Austria/CeMM0352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476499
 2020-04-06 2020-06-25
 Canada hCoV-19/Canada/QC_AC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476500
 2020-04-06 2020-06-25
 Canada hCoV-19/Canada/QC_AD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1150T C1223T C3037T C4886T C14408T G14829T A23403G A24782G G25563T G27561T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476828
 2020-04-06 2020-06-26
 Benin hCoV-19/Benin/1409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T99K T104K C241Y C1059T C3037T C4296G T4463Y A9187R C14408T T17990K A18550M T21763C A23403G T23569Y G25563T C25688T C26681Y T26717W C29200Y TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_477196
 2020-04-06 2020-06-29
 Italy hCoV-19/Italy/IZSPB_4028/2020
 A1CCTCCCGGA C241T C3037T C14408T T16456C A23403G A29880C A29882C AAAAA29884TGGGG AAAAAAAAAAAAAA29890T

EPI_ISL_478404
 2020-04-06 2020-06-30
 United Kingdom hCoV-19/England/LOND-D4278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815T C3037T G12070T C14408T -18033T A23403G C26873T T27553C GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_478724
 2020-04-06 2020-06-30
 United Kingdom hCoV-19/England/NOTT-112064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T A19655G A23403G G25429T G28703T C29642T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478807
 2020-04-06 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFB4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T A1620T A2239G C3037T C12025T C14408T C15324T A17869G A23403G G28374A C29171T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_478971
 2020-04-06 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0E7E/2020
 C241T C3037T C13730T C14408T A23403G G25429T

EPI_ISL_479580
 2020-04-06 2020-06-30
 Singapore hCoV-19/Singapore/502/2020
 C6310A C6312A C9438T G11083T C13620T C13730T C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_479581
 2020-04-06 2020-06-30
 Singapore hCoV-19/Singapore/503/2020
 C6310A C6312A G11083T C13730T C19524T C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_479760
 2020-04-06 2020-07-01
 United States hCoV-19/USA/FL-Miami-04_UMTL-96NV/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T AAGTCATTT686- C1059T G2808A C3037T T10387G C14408T A23403G G25563T A26433G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_480102
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C823T C3037T C14408T A23403G T24295C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480147
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G C25096T C25665T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480151
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480152
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T A4548G C6543T C11195T G12565T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480154
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC AAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29812-

EPI_ISL_480155
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C6099T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480156
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480158
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480174
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C12915T C14408T A23403G G27670T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480175
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480176
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480217
 2020-04-06 2020-07-01
 Japan hCoV-19/Japan/PG-0576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C13430T C14408T A23403G GGG28881AAC G29764T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480396 MT772563
 2020-04-06 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481275 MT704129
 2020-04-06 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0030/2020
 ATTAAAGGTTTATACC1- C21T C241T C1059T C1670T C3037T C10188T C11124T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_481708
 2020-04-06 2020-07-03
 Finland hCoV-19/Finland/6A928SIIB/2020
 C241T G1244A C2416T C3037T C14408T C14937T A19674G A23403G G23611A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481709
 2020-04-06 2020-07-03
 Finland hCoV-19/Finland/6A937SIIB/2020
 C241T C1059T C3037T A6519C G9314T C14408T G15907T A23403G G24368T G25563T G27163T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481710
 2020-04-06 2020-07-03
 Finland hCoV-19/Finland/6A953SIIB/2020
 C241T C1059T C3037T C14408T C15853T C16756T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481711
 2020-04-06 2020-07-03
 Finland hCoV-19/Finland/6A959SIIC/2020
 C241T C2453T C3037T C14408T G22021T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481712
 2020-04-06 2020-07-03
 Finland hCoV-19/Finland/6A962SIIC/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T G28003T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481713
 2020-04-06 2020-07-03
 Finland hCoV-19/Finland/6A973SIIC/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T G28003T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481753
 2020-04-06 2020-07-03
 Canada hCoV-19/Canada/NB_263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T C25566T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482305
 2020-04-06 2020-07-03
 United States hCoV-19/USA/OR-PROV-018/2020
 A4236G G11083T C14805T C22986T T25655C G26144T

EPI_ISL_482674
 2020-04-06 2020-07-05
 Singapore hCoV-19/Singapore/371/2024
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482675
 2020-04-06 2020-07-05
 Singapore hCoV-19/Singapore/370/2023
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483259
 2020-04-06 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0615-SAN/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C11916T C13252T C14408T A23403G G25563T

EPI_ISL_483261
 2020-04-06 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0617-SAN/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C13252T C14408T A23403G G25563T

EPI_ISL_483354
 2020-04-06 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0782-SAN/2020
 ATTA1- C241T C1059T C3037T C7732T C14408T G19101T A23403G G25563T

EPI_ISL_483360
 2020-04-06 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0790-SAN/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C13252T C14408T A23403G G25563T

EPI_ISL_483387
 2020-04-06 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0831-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T C3037T C14408T C18115T C18377T A23403G A25182C G25563T

EPI_ISL_483585
 2020-04-06 2020-07-08
 Singapore hCoV-19/Singapore/562/2020
 ATTAAAGGTTTATACCT1- C6310A C6312A G11083T C13730T G13920A C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483602
 2020-04-06 2020-07-08
 Singapore hCoV-19/Singapore/579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C6310A C6312A G11083T C13730T T19104G C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483725
 2020-04-06 2020-07-08
 Israel hCoV-19/Israel/n14289/2020
 

EPI_ISL_485356
 2020-04-06 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C13792T C14408T C16193T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485360
 2020-04-06 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485364
 2020-04-06 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A9280G C14408T A23403G G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485374
 2020-04-06 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15380T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485390
 2020-04-06 2020-07-09
 South Korea hCoV-19/South Korea/A6/2020
 AT1- G600A A2345G A2480G C2558T C10604T G11083T C14805T G26144T

EPI_ISL_487446
 2020-04-06 2020-07-14
 Mali hCoV-19/Mali/M002593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G11083T C16293T T28144C G28878A C29585T G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487447
 2020-04-06 2020-07-14
 Mali hCoV-19/Mali/M002615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G22468T C25904T T28144C G28878A G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_487448
 2020-04-06 2020-07-14
 Mali hCoV-19/Mali/M002616/2020
 ATTAAAGGTTTATACCTT1- C8782T C14189T T28144C G28878A G29742A GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_487449
 2020-04-06 2020-07-14
 Mali hCoV-19/Mali/M002618/2020
 ATTAAAGGTTTATAC1- G581A C8782T A10323G T11227C T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_487709
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487716
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3959G C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487717
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487791
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487804
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487893
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487914
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C6696T C11001T G16843T A28266R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488890
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488893
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25494T G25563T C29719T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488894
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6578T C14408T C18348T C21622T A23403G AAATTG26096- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488917
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488919
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14178T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488922
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G G28048T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488923
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488933
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G C23533T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488935
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488959
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4904T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488962
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G2891T C6696T C11001T G17122T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488963
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G448K C1059T C1076T C3037T C10582T C14408T A23403G AG25562GT C28310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488967
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488972
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G188A C241T C3037T C3876Y G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488976
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488981
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488989
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- -11075TTT G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488994
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T CG21304AA A23403G G25429T C29679T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489009
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3831A C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489019
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489034
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A12541T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489035
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489037
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C854T ATG1605- T16993Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489040
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489042
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489048
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3880T C14408T T17126C A20268G G21372T A23403G G24197A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489055
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489056
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G188A C241T C3037T G10097A C12747Y C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489058
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C92T C241T C3037T C10798A G11083T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489063
 2020-04-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3444T C5907T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491161
 2020-04-06 2020-07-16
 Oman hCoV-19/Oman/11467/2020
 ATTAAAGGTTT1- T18G CCAGG20- C241T C3037T G10265A C14408T C16293T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_491546
 2020-04-06 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C14408T T15015Y A22198G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491640
 2020-04-06 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C22713T G26031T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491907 MT776401
 2020-04-06 2020-07-17
 United States SARS-CoV-2/human/USA/MD_NIDDL_2941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G19455A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491925 MT776419
 2020-04-06 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T G2441A C3037T C14408T T16456C A23403G G24348T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492203
 2020-04-06 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13282A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1945K C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492347
 2020-04-06 2020-07-20
 United Kingdom hCoV-19/England/BRIS-185349E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C4534T C14408T A23403G C25731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492770
 2020-04-06 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123D78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C6078T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493001
 2020-04-06 2020-07-20
 United States hCoV-19/USA/WY-WYPHL-20007938/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T G10870T C14408T A23403G G25563T

EPI_ISL_494392
 2020-04-06 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1147/2020
 AT1- C241T C3037T C11074T C14408T A23403G C25350T C25566T

EPI_ISL_495593
 2020-04-06 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S001288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T A28811C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495603
 2020-04-06 2020-07-23
 United States hCoV-19/USA/MN-MDH-1304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_495606
 2020-04-06 2020-07-23
 United States hCoV-19/USA/MN-MDH-1307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_495608
 2020-04-06 2020-07-23
 United States hCoV-19/USA/MN-MDH-1309/2020
 ATTA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_499282
 2020-04-06 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1E1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499283
 2020-04-06 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1E2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499289
 2020-04-06 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1E93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G A3003T C3037T C5730T C7231T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499295
 2020-04-06 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1F09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A1717G A2480G C2558T C5575T G11083T C14805T G26144T C26340T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499297
 2020-04-06 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1F27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499298
 2020-04-06 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1F36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T A3852G C5730T G10256T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499300
 2020-04-06 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D1F72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499332
 2020-04-06 2020-07-28
 United Kingdom hCoV-19/England/SHEF-C3FC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27513T GGG28881AAC G29764T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501213
 2020-04-06 2020-07-31
 Malaysia hCoV-19/Malaysia/5815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- AAGTCATTT686- A3223G C6312A C8025T C9438T C9803T A9878T A9883G G11083T C13730T G21255T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501214
 2020-04-06 2020-07-31
 Malaysia hCoV-19/Malaysia/5822/2020
 ATTAAAGGTTTATAC1- G3004T C6312A T7621C G11083T C13730T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501215
 2020-04-06 2020-07-31
 Malaysia hCoV-19/Malaysia/5906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2508A C6310A C6312A G11083T C13730T C19524T C23929T C28311T

EPI_ISL_501217
 2020-04-06 2020-07-31
 Malaysia hCoV-19/Malaysia/6149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C4009T C4068A C6312A T7621C C8645T G11083T C12084T C13730T C23929T C28311T C28697T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_507020 MT820471
 2020-04-06 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T A23403G GGG28881AAC GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_507179
 2020-04-06 2020-08-03
 United Kingdom hCoV-19/England/SHEF-D34BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1190T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508840 MT834734
 2020-04-06 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0636/2020
 ATTAAAGGTTT1- C241T C3037T A3090G C14408T C18877T A23403G G25563T G26814T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_508912
 2020-04-06 2020-08-04
 France hCoV-19/France/ARA20756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATA1- C241T C3037T C3622T C14408T C14676T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_508913
 2020-04-06 2020-08-04
 France hCoV-19/France/ARA20768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C2416T C3037T C7521T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508914
 2020-04-06 2020-08-04
 France hCoV-19/France/ARA20829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C3037T C3045T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_508915
 2020-04-06 2020-08-04
 France hCoV-19/France/ARA20976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCT1- C241T C3037T C14408T C15324T C16428T G21724T T23296C A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508988
 2020-04-06 2020-08-04
 France hCoV-19/France/ARA2068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C241T C3037T T6511C C14408T A23403G G25563T TAAAGTTTCCATTTGGAATCTTGATTACATCATA27267- C27889T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508990
 2020-04-06 2020-08-04
 France hCoV-19/France/ARA20869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACG1- C241T C2263T C2416T C3037T G8371T C14408T T18321C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_509079
 2020-04-06 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2944A A4236G G11083T C14805T G22468T T25655C G26144T

EPI_ISL_509080
 2020-04-06 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4236G T9622C G11083T T11526C C14805T G22567A T25655C G26144T C27247T C28099T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509081
 2020-04-06 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6285T C14408T C15328T C23315T A23403G G25563T C27964T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509448 MT827210
 2020-04-06 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0044/2020
 ATTAAA1- T25C C241T C1059T C3037T C10156T C14408T A23403G A23476G T24022C C24863T G25563T T29859A G29862A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_509449 MT827211
 2020-04-06 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0045/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AA29902-

EPI_ISL_509715 MT844022
 2020-04-06 2020-08-05
 United States SARS-CoV-2/human/USA/WI-CDC-0952/2020
 G2809T C9520T A16438G A29231G G29711T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_511361
 2020-04-06 2020-08-07
 Portugal hCoV-19/Portugal/PT1402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- A2480G C2558T A8051G A9737G G11083T C14805T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511711
 2020-04-06 2020-08-08
 Portugal hCoV-19/Portugal/PT1165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6117T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511869
 2020-04-06 2020-08-09
 United States hCoV-19/USA/MD-HP00549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_511871
 2020-04-06 2020-08-09
 United States hCoV-19/USA/MD-HP00567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C6449T C8782T G12478A T17531C T18736C C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512825
 2020-04-06 2020-08-12
 Singapore hCoV-19/Singapore/789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C6310A C6312A G11083T C13730T C19524T A20539R C23929T C28311T C29642T AAAAAAAAAAAA29892-

EPI_ISL_512931
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH486/2020
 C241T C14408T A23403G G25563T C26735T

EPI_ISL_512932
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH487/2020
 C241T C3037T C14408T C18877T A23403G A23631T G25563T C26735T

EPI_ISL_512934
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH490/2020
 C241T C3037T C14408T A23403G G25563T C26735T

EPI_ISL_513041
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH900/2020
 C241T C3037T C4893T C14408T G25563T C25721T C26735T

EPI_ISL_513042
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH903/2020
 C241T C3037T A10124G C14408T A17615G T21146G A23403G G25563T C26735T

EPI_ISL_513043
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH905/2020
 C241T C3037T C14408T T17009G C19586T A23403G GGG28881AAC

EPI_ISL_513044
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH911/2020
 C241T C3037T C8782T C11109T C14408T T19966C C21557T A23403G GGG28881AAC TTCACCGAGGCCACGCGGAGTA29728-

EPI_ISL_513045
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH912/2020
 C241T C3037T G7798T C14408T GGG28881AAC

EPI_ISL_513046
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH913/2020
 C241T C14408T C16468T GGG28881AAC

EPI_ISL_513047
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH916/2020
 C241T C3037T C14408T G20397T A23403G T27484C

EPI_ISL_513048
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH917/2020
 C241T C3037T C14408T A23403G C25482T GGG28881AAC

EPI_ISL_513049
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH918/2020
 C241T C3037T C14408T GGG28881AAC

EPI_ISL_513050
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH919/2020
 C241T G7145A C14408T C18877T C26735T

EPI_ISL_513051
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH920/2020
 C241T C3037T C14408T G21641T A23403G GGG28881AAC

EPI_ISL_513052
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH921/2020
 C241T A532G T8545C C14408T C20428A A23403G G25563T C25721T C26735T

EPI_ISL_513053
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH922/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_513054
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH923/2020
 C241T C3037T C14408T GGG28881AAC

EPI_ISL_513055
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH926/2020
 C241T C3037T C14408T GGG28881AAC

EPI_ISL_513056
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH927/2020
 C241T C14408T A23403G C25945A GGG28881AAC

EPI_ISL_513057
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH929/2020
 C241T C2091T C3037T C11235T C14408T GGG28881AAC

EPI_ISL_513058
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH930/2020
 C241T C3037T G10427A C14408T A23403G C28139T GGG28881AAC

EPI_ISL_513059
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH931/2020
 C241T G10427A C14408T A23403G C25578G C28139T GGG28881AAC

EPI_ISL_513060
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH932/2020
 C241T C3037T G10427A C14408T C25578G C28139T GGG28881AAC

EPI_ISL_513061
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH933/2020
 C241T C3037T G10427A C14408T G21641T A23403G C25578G C28139T GGG28881AAC

EPI_ISL_513062
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH935/2020
 C241T C556T C3037T C14408T C18877T C19718T G25563T C26735T

EPI_ISL_513167
 2020-04-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH521/2020
 C241T C1218T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_514468
 2020-04-06 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D1798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514475
 2020-04-06 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D1974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515225
 2020-04-06 2020-08-18
 Canada hCoV-19/Canada/QC_AQ8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516873
 2020-04-06 2020-08-24
 United Kingdom hCoV-19/England/LOND-125F814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13881T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516874
 2020-04-06 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FAC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516877
 2020-04-06 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FD9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22841T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516878
 2020-04-06 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FE6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11457C C14408T A23403G G25009A C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516880
 2020-04-06 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FA96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A19543C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516883
 2020-04-06 2020-08-24
 United Kingdom hCoV-19/England/LOND-125FAA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G19816T G26144T G29414A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524516
 2020-04-06 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-172CB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C15017T G15672T A23403G C28836T C29409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524556
 2020-04-06 2020-08-28
 United Kingdom hCoV-19/Scotland/GCVR-173034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G2100T C4345T C9448Y C12213T C25511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524708
 2020-04-06 2020-08-28
 United Kingdom hCoV-19/England/LOND-1261448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T G21538T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524873
 2020-04-06 2020-08-28
 United States hCoV-19/USA/MD-MDH-0145/2020
 ATTAAAGGT1- A12T C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_525654
 2020-04-06 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-39179-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T T16728C A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525655
 2020-04-06 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-39537-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T G15327T A23403G G25563T A27477T C29466T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525657
 2020-04-06 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-40198-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T G9388A C11916T C14408T G18255T C18998T A23403G G25563T GC29540AT TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527053
 2020-04-06 2020-09-03
 Australia hCoV-19/Australia/NSW2552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527054
 2020-04-06 2020-09-03
 Australia hCoV-19/Australia/NSW2557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527062
 2020-04-06 2020-09-03
 Australia hCoV-19/Australia/NSW2577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1850G C3037T C14408T A20268G A23403G C28854T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_530058
 2020-04-06 2020-09-10
 Spain hCoV-19/Spain/MD-LP55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8175T C14408T C18828T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534782
 2020-04-06 2020-09-14
 United Kingdom hCoV-19/England/OXON-B298A/2020
 C241T C2706T C3037T A10948G C14408T A23403G C27542T GGG28881AAC AAAAA29899-

EPI_ISL_534798
 2020-04-06 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2BB1/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_534831
 2020-04-06 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2F88/2020
 C241T C3037T C8025T G10097A C11704T C14408T C19862T A23403G C23731T G28580T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_534874
 2020-04-06 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3628/2020
 C241T C3037T C14408T A23403G G27238T G28077T

EPI_ISL_538480
 2020-04-06 2020-09-17
 Singapore hCoV-19/Singapore/946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538481
 2020-04-06 2020-09-17
 Singapore hCoV-19/Singapore/947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538482
 2020-04-06 2020-09-17
 Singapore hCoV-19/Singapore/948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538483
 2020-04-06 2020-09-17
 Singapore hCoV-19/Singapore/949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538484
 2020-04-06 2020-09-17
 Singapore hCoV-19/Singapore/950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538786
 2020-04-06 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA19A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1348A C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538792
 2020-04-06 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538805
 2020-04-06 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G613T G1440A C1959T G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538814
 2020-04-06 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4795T A10505G C10507T C12623T T13678C C14408T A23403G C27046T GGG28881AAC A28910C C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538825
 2020-04-06 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538830
 2020-04-06 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA4EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T G21724T C22326T A23403G G23587C C27128T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538894
 2020-04-06 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335Y C2416T C3037T C14408T C19269T A23403G C25508T G25563T C27575T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538980
 2020-04-06 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539016
 2020-04-06 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A91D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1778C C3037T C6762T C8389T C14408T A23403G C23453T G25563T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539024
 2020-04-06 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A908F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T C14688T C17762Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539146
 2020-04-06 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C6449T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539167
 2020-04-06 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8DE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7405T C14025T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539179
 2020-04-06 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A91F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539202
 2020-04-06 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A934A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C364T G1008T C8782T G11230T C23536T T28144C G28167A G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539209
 2020-04-06 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A92F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2563G C3037T C3743Y C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541239
 2020-04-06 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C4331T C5884T C13487T C14408T C22858T A23403G G25563T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_541348
 2020-04-06 2020-09-22
 Brazil hCoV-19/Brazil/RJ-1798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C7267T C14408T A23403G T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541852
 2020-04-06 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr25/2020
 A1- C3264T C15324T T21644C C29303T AAAAAAAAAA29894-

EPI_ISL_541853
 2020-04-06 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr27/2020
 A1- C241T C3037T C14408T A23403G C23575T G23587C TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_541854
 2020-04-06 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr31/2020
 A1- A2810G C15324T T21644C C29303T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_541855
 2020-04-06 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr33/2020
 A1- A2810G C15324T T21644C C29303T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_542503
 2020-04-06 2020-09-23
 United States hCoV-19/USA/TX-HMH-1036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18055A G19525T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542506
 2020-04-06 2020-09-23
 United States hCoV-19/USA/TX-HMH-1045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T G20062T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542509
 2020-04-06 2020-09-23
 United States hCoV-19/USA/TX-HMH-1054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C21855T C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542511
 2020-04-06 2020-09-23
 United States hCoV-19/USA/TX-HMH-1057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G1980A C3037T C14408T G16979T A23403G G25563T C27964T C28486T C29741T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_544368
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544381
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544433
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C20320T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_544687
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C28948T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544705
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A C13011T A15018C T18736C C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544713
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25919T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544812
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544925
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15240T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544934
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544950
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545876
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G C27145T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545889
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545912
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9996T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546656
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T G4631A C6310T C14408T A23403G A25315G C25413T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546952
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547001
 2020-04-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T2803A C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559971
 2020-04-06 2020-09-28
 United Kingdom hCoV-19/Scotland/EDB1030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560571
 2020-04-06 2020-09-29
 France hCoV-19/France/CVL8267/2020
 ATTAAAGGTTTATACCTTC1- A26- C28T C241T C3037T A9741C C12616T C14408T C21233T A23403G A23691G C24621T GGG28881AAC C29743A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_560759
 2020-04-06 2020-09-29
 United States hCoV-19/USA/MN-MDH-1672/2020
 ATTA1- C241T C1059T C3037T C14408T T19527C A23403G G25563T C27964T C28099T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560760
 2020-04-06 2020-09-29
 United States hCoV-19/USA/MN-MDH-1673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560761
 2020-04-06 2020-09-29
 United States hCoV-19/USA/MN-MDH-1674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A2480G C2558T G9623T C10908T G11083T C14805T G26144T G28851C TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_560767
 2020-04-06 2020-09-29
 United States hCoV-19/USA/MN-MDH-1680/2020
 ATTAAAGGT1- C8055T C8782T G14350T C17747T A17858G C18060T A24694T G25471T T28144C G28812T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_565963
 2020-04-06 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C21587T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_565966
 2020-04-06 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T C4582T A5011M C6606T C7844T C14408T T21439K A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565975
 2020-04-06 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21914/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C25976A C29218Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565980
 2020-04-06 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T C11003A C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_565982
 2020-04-06 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C11497T C14408T A23403G G25477K G25563T G26439K AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_565989
 2020-04-06 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21929/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25563T C25976A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_566019
 2020-04-06 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C4582T A5011M C6606T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_569558
 2020-04-06 2020-10-02
 France hCoV-19/France/IHU-0504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569559
 2020-04-06 2020-10-02
 France hCoV-19/France/IHU-0505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C2675T C3037T T13006C C14391T C14408T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569560
 2020-04-06 2020-10-02
 France hCoV-19/France/IHU-0506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T C19763T A23403G G25440T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569561
 2020-04-06 2020-10-02
 France hCoV-19/France/IHU-0507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2189T C3037T G4105T C14408T C15324T C19170T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569562
 2020-04-06 2020-10-02
 France hCoV-19/France/IHU-0508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2189T C3037T C14408T C15324T A23403G G28916T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_569563
 2020-04-06 2020-10-02
 France hCoV-19/France/IHU-0510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C18512T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569564
 2020-04-06 2020-10-02
 France hCoV-19/France/IHU-0511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C10802T C14408T A23403G G24050C G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569566
 2020-04-06 2020-10-02
 France hCoV-19/France/IHU-0516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569567
 2020-04-06 2020-10-02
 France hCoV-19/France/IHU-0518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T C26622T T27958C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569568
 2020-04-06 2020-10-02
 France hCoV-19/France/IHU-0520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569570
 2020-04-06 2020-10-02
 France hCoV-19/France/IHU-0522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T A1198G C2416T C3037T C6401T C13458T C14408T C20946T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569584
 2020-04-06 2020-10-02
 France hCoV-19/France/IHU-0545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

MT358401
 2020-04-06 2020-04-17
 United States SARS-CoV-2/human/USA/LA096/2020
 ATTAAAGG1- C241T C1059T G2528A C3037T C10319T C11674T C14408T G18281T A23403G G25563T C27964T

MT358402
 2020-04-06 2020-04-17
 United States SARS-CoV-2/human/USA/LA097/2020
 ATTAAAG1- C241T G598T C1059T C3037T C9443T T11121C C14408T A23403G G25563T C27964T

MT446339
 2020-04-06 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C10188T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT703883
 2020-04-06 2020-07-02
 United States SARS-CoV-2/human/USA/NY-CDC-6683/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT703884
 2020-04-06 2020-07-02
 United States SARS-CoV-2/human/USA/NY-CDC-6684/2020
 C241T C1059T C3037T C14408T A23403G G25563T A29004C AAAAAAAAAAAAAAAAAAAAA29883-

MT706249
 2020-04-06 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706250
 2020-04-06 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3259T G10805A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706272
 2020-04-06 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T C14408T C18877T A23403G A24862G G25563T A29731T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706280
 2020-04-06 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G25981A G28539T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810619
 2020-04-06 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1147-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C11074T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810942
 2020-04-06 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0225-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G A23403G T25556G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811012
 2020-04-06 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0405-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811272
 2020-04-06 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0615-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C11916T C13252T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811274
 2020-04-06 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0617-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C11916T C13252T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811366
 2020-04-06 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0782-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C7732T C14408T G19101T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811372
 2020-04-06 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0790-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C11916T C13252T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811398
 2020-04-06 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0831-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C18115T C18377T A23403G A25182C G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811569
 2020-04-06 2020-07-29
 Jordan SARS-CoV-2/human/JOR/SEARCH-0336-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C9223T G11230T T28144C G28878A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811743
 2020-04-06 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0322-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C9246T C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873066
 2020-04-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00902/2020
 ATTAAA1- G105T C241T C3037T C9565T C10138T C13774T C14408T C18877T A23403G G25563T

MT873213
 2020-04-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00194/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873230
 2020-04-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00181/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873255
 2020-04-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00185/2020
 ATTAAA1- A7479G G11083T C14805T T17247C C25572T G26144T C28006T C28887T

MT873258
 2020-04-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00182/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873262
 2020-04-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00189/2020
 C241T C2416T G2448T C3037T A5725G C14408T C16887T A23403G C24096A G25563T A29903-

MT873294
 2020-04-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00183/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873414
 2020-04-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00188/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873421
 2020-04-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00187/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873450
 2020-04-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00180/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

MT873506
 2020-04-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00192/2020
 C241T C2416T C3037T G7954T C14408T A23403G G25563T G26233T

MT886407
 2020-04-06 2020-08-14
 United States SARS-CoV-2/human/USA/Yale-100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT937808
 2020-04-06 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0145/2020
 ATTAAAGGT1- A12T C241T C1059T C3037T C14408T A23403G G25563T

MW023500
 2020-04-06 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C4331T C5884T C13487T C14408T C22858T A23403G G25563T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

MW047018
 2020-04-06 2020-09-29
 United States SARS-CoV-2/human/USA/GA-EHC-139K/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- T490A C3177T C6040T C8782T C12085T G12478A T18736C C24034T T26729C G28077C T28144C C28453T C28896G A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

NMDC60013153
 2020-04-06 2020-06-01
 China hCoV-19/Guangzhou/ID140/2020
 AT1-G C241T C3037T C14408T C15324T C19524T A23403G G29868M

NMDC60013163
 2020-04-06 2020-06-01
 China hCoV-19/Guangzhou/ID142/2020
 A4- C241T C3037T C14408T C15324T A23403G G29868A

EPI_ISL_427324
 2020-04-07 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4686S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427325
 2020-04-07 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4693S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427326
 2020-04-07 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4694S/2020
 G116A C157G G210C C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427327
 2020-04-07 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4696S/2020
 C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427328
 2020-04-07 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4697S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427329
 2020-04-07 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4707S/2020
 C3037T C14408T A23403G C24319T C26750T GGG28881AAC

EPI_ISL_427330
 2020-04-07 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4711S/2020
 C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427331
 2020-04-07 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4713S/2020
 T148C G199C C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427332
 2020-04-07 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4723S/2020
 C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427333
 2020-04-07 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4724S/2020
 C3037T A11451G C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427334
 2020-04-07 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4726S/2020
 C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427335
 2020-04-07 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4728S/2020
 CGT28881GCC T221C C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427336
 2020-04-07 2020-04-18
 Russia hCoV-19/Russia/StPetersburg-RII4781S/2020
 C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_427352
 2020-04-07 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10101/2020
 C241T C3037T T4011C G4261A C14408T A23403G GGG28881AAC

EPI_ISL_427358
 2020-04-07 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10107/2020
 C241T C2773T C3037T C14408T C18348T A23403G A28081G

EPI_ISL_427364
 2020-04-07 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10115/2020
 C241T C3037T G4255T C14408T G18756T A23403G A26530G

EPI_ISL_427366
 2020-04-07 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10118/2020
 C241T C3037T C12756T A14270C C14408T A23403G C27503T

EPI_ISL_427371
 2020-04-07 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10124/2020
 C241T C3037T C14408T A21137G A23403G

EPI_ISL_427372
 2020-04-07 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10126/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T

EPI_ISL_427379
 2020-04-07 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10134/2020
 C241T A2238G C3037T C14408T C15324T A22108C A23403G

EPI_ISL_427388
 2020-04-07 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10144/2020
 C241T C3037T C14408T C16394T C23086T A23403G GGG28881AAC

EPI_ISL_427429
 2020-04-07 2020-04-18
 United States hCoV-19/USA/WI-UW-122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427431
 2020-04-07 2020-04-18
 United States hCoV-19/USA/WI-UW-124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427432
 2020-04-07 2020-04-18
 United States hCoV-19/USA/WI-UW-125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427434
 2020-04-07 2020-04-18
 United States hCoV-19/USA/WI-UW-127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T C14408T C18877T A23403G A24862G G25563T A29731T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427435
 2020-04-07 2020-04-18
 United States hCoV-19/USA/WI-UW-128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T G19254T A23403G A23947G G28539T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427448
 2020-04-07 2020-04-18
 United States hCoV-19/USA/WI-UW-141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427455
 2020-04-07 2020-04-18
 United States hCoV-19/USA/WI-UW-148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427456
 2020-04-07 2020-04-18
 United States hCoV-19/USA/WI-UW-149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A C29269T G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429206
 2020-04-07 2020-04-23
 Switzerland hCoV-19/Switzerland/GE5007/2020
 ATTAAAGG1- C241T C2416T C3037T C14408T T17091C A23403G G25563T

EPI_ISL_429222
 2020-04-07 2020-04-23
 Switzerland hCoV-19/Switzerland/GE3655/2020
 ATTA1- C241T C3037T C14408T T19839C A23403G T24887C GGG28881AAC G29779T

EPI_ISL_429223
 2020-04-07 2020-04-23
 Switzerland hCoV-19/Switzerland/GE4644/2020
 ATTAAAGGT1- C241T C3037T A9946G C14408T T19839C A23403G GGG28881AAC

EPI_ISL_429634 MT375463
 2020-04-07 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36B C241T C1059T C3037T C14408T A23403G G25563T -29904AAAA

EPI_ISL_429636 MT375465
 2020-04-07 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T G11083T C14408T T17506A A17542G A23403G G25563T -29904AAAA

EPI_ISL_429637 MT375466
 2020-04-07 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4925/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAAC19- C37T C241T C1059T C3037T C14408T A23403G G25563T C27804T G29553A -29904AA

EPI_ISL_429638 MT375467
 2020-04-07 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-4999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCG1- C241T C1059T C3037T A10579G C14408T A23403G G25563T

EPI_ISL_429639 MT375468
 2020-04-07 2020-04-23
 United States SARS-CoV-2/human/USA/WA-UW-5025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- ACC35WTH C241T C1059T C1437T C3037T C6040T C11036T C14408T A23403G G25563T -29904AAAA

EPI_ISL_430067
 2020-04-07 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4705S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430068
 2020-04-07 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4712V/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430069
 2020-04-07 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4780S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430070
 2020-04-07 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4917S/2020
 C241T C3037T T11638C C14408T T19331G A23403G GGG28881AAC G29422A C29708T

EPI_ISL_430360
 2020-04-07 2020-04-26
 United States hCoV-19/USA/NY-NYUMC333/2020
 C241T C3037T T6691C C14408T C18877T A23403G G25563T G26730T

EPI_ISL_430361
 2020-04-07 2020-04-26
 United States hCoV-19/USA/NY-NYUMC334/2020
 C241T C1059T C3037T C14408T G17721T A23403G G25563T

EPI_ISL_430367
 2020-04-07 2020-04-26
 United States hCoV-19/USA/NY-NYUMC340/2020
 C241T C1059T C3037T C11916T C14408T C14925T C18998T A23403G G25563T G29540A

EPI_ISL_430372
 2020-04-07 2020-04-26
 United States hCoV-19/USA/NY-NYUMC345/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T C26111T

EPI_ISL_430378
 2020-04-07 2020-04-26
 United States hCoV-19/USA/NY-NYUMC351/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26447T C29754T

EPI_ISL_430379
 2020-04-07 2020-04-26
 United States hCoV-19/USA/NY-NYUMC352/2020
 C241T C512T C1059T C3037T C14408T C17430T C20480T A23403G G25563T

EPI_ISL_430381
 2020-04-07 2020-04-26
 United States hCoV-19/USA/NY-NYUMC354/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_430573 MT451751
 2020-04-07 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1112/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430577 MT451754
 2020-04-07 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1115/2020
 C1076T G1397A G11083T G16360R TT22469YW G22493S C27964T T28688C G29742T

EPI_ISL_430678 MT641730
 2020-04-07 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1279/2020
 C241T C3037T C14408T A23403G C27812T GGG28881AAC

EPI_ISL_430810
 2020-04-07 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C11916T C14362T C14408T G16852T C18998T A23403G G25563T G28178K G29540A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_430907 MT412264
 2020-04-07 2020-04-28
 United States SARS-CoV-2/human/USA/CT-UW-5595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C3037T T14104C C14408T C18877T C21914T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430916 MT412273
 2020-04-07 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-5742/2020
 ATTAAAGGTTTATACCTTCCCAG1- C36T C241T C1059T C3037T A12148T C13536T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430920 MT412277
 2020-04-07 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5756/2020
 ATTAAAGGTTTATACCTTC1- A31T AAC34TTT C241T C1059T C3037T C14408T G20134T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_430924 MT412281
 2020-04-07 2020-04-28
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-5769/2020
 ATTAAAGGTTTATACCTTCCC1- A31T AAC34TTT TGGTCATGTTATGGT508- C8782T A10844G G15982T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_430928 MT412285
 2020-04-07 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5879/2020
 ATTAAAGGTTTATACCTTC1- A31T C36T C241T C1059T T1117C C3037T C12880T C14408T A23403G G25563T G29553A GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_430929 MT412286
 2020-04-07 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5884/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_430931 MT412288
 2020-04-07 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5932/2020
 ATTAAAGGTTTATACC1- A31T C36T C241T C1059T C3037T C13554T C14408T A23403G G25563T C27804T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_430932 MT412289
 2020-04-07 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5947/2020
 ATTAAA1- A31T C36T C241T C1059T C3037T C4084T C14408T A23403G G25563T G29553A

EPI_ISL_432213
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2AF5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3215G C14408T G15438T A20268G A23403G G24098K T27922C

EPI_ISL_432261
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B1A2/2020
 ATTA1- C241T C3037T C14408T G21624T A23403G GGG28881AAC

EPI_ISL_432263
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B00F/2020
 A1- C241T C3037T C5192T C14408T G18907T C22314T A23403G T24796C GGG28881AAC

EPI_ISL_432264
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B148/2020
 ATTA1- C241T C3037T T5573C C6380T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_432269
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2AE42/2020
 A1- A6295G C7165A G11083T C12439T C14805T C15356Y C20235T C26111T G26144T G28842T

EPI_ISL_432272
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B1EE/2020
 C241T G1589A C3037T C14408T A23403G G25429T G29474T

EPI_ISL_432276
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2AEBB/2020
 C241T C3037T C14408T C19170T G19509A C20941T A23403G C24023T GGG28881AAC

EPI_ISL_432284
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B0B4/2020
 AT1- C241T C3037T T5573C C6380T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_432300
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B096/2020
 C241T C1059T C3037T C10376T C14408T G18583T A23403G G24368T G25563T G29773T

EPI_ISL_432305
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B087/2020
 AT1- C241T C1059T C3037T C10376T C14408T G18583T A23403G G24368T G25563T G29773T

EPI_ISL_432309
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B0A5/2020
 ATTA1- C241T C1059T C3037T C10376T C14408T G18583T A23403G G24368T G25563T G29773T

EPI_ISL_432315
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B2EB/2020
 AT1- ATG1605- G18079T G26262A A26981G

EPI_ISL_432478
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C9E36/2020
 C241T C3037T G7736A C14408T C15324T A23403G

EPI_ISL_432691
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10FB69/2020
 C241T C3037T G10097A C14408T A23403G C23731T G26746T G28580T GGG28881AAC

EPI_ISL_432722
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C11BD/2020
 C241T C3037T G10097A C11750T C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_433270
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6690T C7967Y C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_433384
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1076/2020
 C241T C3037T C4551T T5161A C14408T T17126C A20268G A23403G G28001T G29742T

EPI_ISL_433385
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1077/2020
 C241T C3037T T14079C C14408T A23403G GGG28881AAC

EPI_ISL_433386
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1078/2020
 C241T T2987C C3037T A3215G C6286T C14408T G15438T A20268G A23403G

EPI_ISL_433387
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1079/2020
 A6616G C7423T

EPI_ISL_433388
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1081/2020
 C241T C3037T C4010T C14408T A20268G A23403G C28854T

EPI_ISL_433389
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1093/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433390
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1094/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433391
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1095/2020
 C241T C3037T C14408T C16289T C17249T A23403G T24995C G25429T

EPI_ISL_433392
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1096/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_433408
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1148/2020
 C241T C3037T C14408T G19891T A23403G C25433T

EPI_ISL_433410
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1151/2020
 C241T C3037T C3543T C14408T C16289T A23403G G25429T G25838T

EPI_ISL_433411
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1152/2020
 C241T C2937T C3037T C4784T C14408T A20268G A23403G

EPI_ISL_433412
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1158/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433421
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1171/2020
 A2480G C2558T C5221T A9848G G11083T A14436G C14805T G26144T

EPI_ISL_433425
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1180/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433774
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-787D1/2020
 C241T C3037T C8344T C14408T C19011T A23403G TTGTCCTGACGGCGTAAAACACGTCTATCAGT27591- GGG28881AAC

EPI_ISL_433775
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-787E0/2020
 C241T AAGTCATTT686- C3037T T7216C C14408T C16468T A23403G G24488T G25012T GGG28881AAC

EPI_ISL_433776
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7880B/2020
 C241T C2508T C3037T C13430T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_433778
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78829/2020
 C241T C3037T C6861T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_433784
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78892/2020
 A2480G C2558T G7393T G11083T C14805T C21639T G26144T

EPI_ISL_433786
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-788B0/2020
 C241T C2940T C3037T C14408T A23403G C28657T

EPI_ISL_433789
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-788ED/2020
 C241T C3037T C12076T C14408T C19488T A23403G GGG28881AAC G29701T

EPI_ISL_433790
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-788FC/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_433792
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78926/2020
 C241T C3037T C5239T C14408T A23403G C27879T GGG28881AAC

EPI_ISL_433795
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78953/2020
 C241T AAGTCATTT686- C3037T C11514T C14408T A20268G G22380A A23403G

EPI_ISL_433796
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78962/2020
 C241T A2869G C3037T C14408T A23403G G28307A GGG28881AAC C29095T T29817C

EPI_ISL_433797
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78971/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29706T

EPI_ISL_433798
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78980/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_433803
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-789DB/2020
 C241T C313T C3037T C14408T A23403G G26589C C27128T GGG28881AAC

EPI_ISL_433805
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-789F9/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433809
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78A50/2020
 C241T C3037T C14408T G15380T C17163T A23403G A26225G GGG28881AAC

EPI_ISL_433812
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78ABA/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433828
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7A8FA/2020
 C241T C3037T C14408T C19366T A23403G C26607T GGG28881AAC

EPI_ISL_433834
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AAA9/2020
 C241T T1983C C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_433835
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AAB8/2020
 C241T C3037T C14408T G15906T A23403G G28378T GGG28881AAC

EPI_ISL_433837
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AAD6/2020
 C835T A2480G C2558T G11083T C14805T C22227T G26144T

EPI_ISL_433839
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AAF4/2020
 C241T C3037T C14408T G21123T A23403G GGG28881AAC

EPI_ISL_433840
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AB00/2020
 C241T C3037T C14408T C18377T A23403G G25429T C25916T

EPI_ISL_433844
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AB79/2020
 C241T C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_433846
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AB97/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433847
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7ABA6/2020
 C241T C3037T C12076T C14408T C19488T A23403G GGG28881AAC G29701T

EPI_ISL_433849
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7ABC4/2020
 C241T C3037T C14408T C19524T A23403G GGG28881AAC

EPI_ISL_433861
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AC94/2020
 C241T C3037T C14408T C16289T A23403G G25429T C25936T

EPI_ISL_433870
 2020-04-07 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AD46/2020
 C241T C3037T C14408T A23403G G25784C GGG28881AAC

EPI_ISL_434612 MT429188
 2020-04-07 2020-04-30
 United States SARS-CoV-2/human/USA/WI-UW-266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3811T G14692A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434628
 2020-04-07 2020-04-30
 France hCoV-19/France/OCC-13/2020
 C241T C1427T C3037T G5305A G9422T C14408T A20262G A23403G G25218T GGG28881AAC

EPI_ISL_434629
 2020-04-07 2020-04-30
 France hCoV-19/France/OCC-14/2020
 C241T C1427T C3037T G3419A G3871T C13517T C14408T A23403G GGG28881AAC

EPI_ISL_434661
 2020-04-07 2020-04-30
 Sweden hCoV-19/Sweden/20-07010/2020
 C241T C1059T C3037T C8809T C14408T A23403G G24368T G25563T C29836T

EPI_ISL_434662
 2020-04-07 2020-04-30
 Sweden hCoV-19/Sweden/20-07013/2020
 C241T C3037T C12400T C14408T T19839C A23403G C24099T G25855T T25858A GGG28881AAC

EPI_ISL_435053 MT435083
 2020-04-07 2020-05-02
 India SARS-CoV-2/human/IND/GBRC6/2020
 C241T G2249A C3037T T7022C C14408T G19872T T20063C A23403G C23638T

EPI_ISL_435146
 2020-04-07 2020-05-03
 Italy hCoV-19/Italy/TE12337/2020
 A187G C241T C3037T G4609T A6866W A6869T C14408T G17331T C17976T A23403G C23533T G27008T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_435441
 2020-04-07 2020-05-05
 United States hCoV-19/USA/AK-PHL151/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_435442
 2020-04-07 2020-05-05
 United States hCoV-19/USA/AK-PHL153/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25523T G25563T T27869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_435498
 2020-04-07 2020-05-05
 United States hCoV-19/USA/NY-NYUMC431/2020
 C241T C3037T A8170G C14408T C18877T A23403G G25563T

EPI_ISL_435703
 2020-04-07 2020-05-05
 United States hCoV-19/USA/CT-Yale-105/2020
 C241T C1059T C3037T C11916T C12880T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_435704
 2020-04-07 2020-05-05
 United States hCoV-19/USA/CT-Yale-106/2020
 C241T A810G C1059T C3037T T9070C T10960C C14408T A23403G G25563T

EPI_ISL_436464
 2020-04-07 2020-05-06
 United States hCoV-19/USA/AK-PHL152/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G11083T C14408T C16457T G22201A A23403G G25523T G25563T T27869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_436578 MT706392
 2020-04-07 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436946 MT446346
 2020-04-07 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-078/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_437056 MT449647
 2020-04-07 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1056/2020
 ATTAAA1- AAGTCATTT686- C10277T C17249T

EPI_ISL_437076 MT449667
 2020-04-07 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1076/2020
 ATTAAAGGTTT1- T13Y G491A T6386W A8193R A14940G T15922Y

EPI_ISL_437084 MT449675
 2020-04-07 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1084/2020
 ATTAAAGGTTT1- A14940G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_437214
 2020-04-07 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0013/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29402T

EPI_ISL_437241
 2020-04-07 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0042/2020
 C241T C3037T T10561C G12191T C14408T C15324T A23403G C28957T

EPI_ISL_437369
 2020-04-07 2020-05-08
 United States hCoV-19/USA/MN-MDH-398/2020
 AT1- C241T C1059T C3037T A5309G C14408T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_437401 MT450887
 2020-04-07 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_437458
 2020-04-07 2020-05-09
 United States hCoV-19/USA/IN-Lilly-IPB0170-15bc12/2020
 C241T C3037T C14408T G21004T A23403G G28851T

EPI_ISL_437523
 2020-04-07 2020-05-11
 United States hCoV-19/USA/OR-OHSU-0023/2020
 A4236G G7100T G11083T C14805T C25276T T25655C G26144T

EPI_ISL_437574
 2020-04-07 2020-05-11
 United States hCoV-19/USA/CA-SR0228/2020
 C241T C1059T C1887T C3037T C14408T T16993C A23403G G25563T C29870A

EPI_ISL_438128
 2020-04-07 2020-05-12
 Austria hCoV-19/Austria/CeMM0365/2020
 C241T C3037T C12073T C14408T A23403G C24642T C26261Y C27046T G28395T GGG28881AAC

EPI_ISL_438860
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G4392A C12710T C28854T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_439144
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB1014/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_439146
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB1080/2020
 C241T C3037T C14408T C16289T G16741T C17375T C18508T A23403G G25429T

EPI_ISL_439673
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/England/LIVE-98F2E/2020
 C241T C3037T C14408T C16616T A23403G GGG28881AAC

EPI_ISL_439677
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/England/LIVE-98F79/2020
 ATG1605- G5008T C17518T C20270T C29218T

EPI_ISL_439681
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/England/LIVE-98FD3/2020
 C241T C3037T C14408T T20286C A23403G T28094C GGG28881AAC T29568C

EPI_ISL_439682
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/England/LIVE-98FF1/2020
 C241T C3037T C12669T C14408T A23403G T26497C GGG28881AAC

EPI_ISL_439683
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9900C/2020
 C241T C3037T C14408T A23403G T26497C GGG28881AAC

EPI_ISL_439684
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9901B/2020
 C241T C3037T C13740T C14408T A23403G GGG28881AAC

EPI_ISL_439687
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/England/LIVE-99048/2020
 C241T C3037T T12691C C14408T C15237T A23403G G25563C GGG28881AAC

EPI_ISL_439704
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9927F/2020
 C241T C3037T G10097A C14408T A23403G C23731T C26195T GGG28881AAC

EPI_ISL_441728
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7D54B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T T9505C C14408T C14786T G20578T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442179
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7E0C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T A23403G T25202K C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_442640
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/England/BRIS-1236B9/2020
 ATTAAAGGT1- C241T A873G C3037T T3877A G6446T G7038A C14408T A23403G GGG28881AAC

EPI_ISL_442745
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/England/BRIS-123B05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G

EPI_ISL_442999
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7EC45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_443041
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7EC27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T C25904T G28580T GGG28881AAC

EPI_ISL_443118
 2020-04-07 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7EA96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CACCGAGGCCACGCGGAGTACGATCGAGTG29730- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_444394
 2020-04-07 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7AD19/2020
 C241T C3037T C14408T A23403G C25350T C29362T

EPI_ISL_445147
 2020-04-07 2020-05-15
 United States hCoV-19/USA/LA-SR0292/2020
 C241T C1059T C2189T C3037T C10319T C13667T C14408T A23403G G25563T C27964T

EPI_ISL_445148
 2020-04-07 2020-05-15
 United States hCoV-19/USA/LA-SR0293/2020
 C241T C1059T C3037T A3224G C10319T C14408T C21742T A23403G G25563T C27964T

EPI_ISL_445151
 2020-04-07 2020-05-15
 United States hCoV-19/USA/LA-SR0296/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T C28697T TGGAAGAGCCCTAATG29793-

EPI_ISL_445154
 2020-04-07 2020-05-15
 United States hCoV-19/USA/LA-SR0299/2020
 C241T C1059T C3037T C3787T C14408T A23403G G25563T C27964T C28708T

EPI_ISL_445159
 2020-04-07 2020-05-15
 United States hCoV-19/USA/LA-SR0304/2020
 C241T C1059T C3037T C13264T C14408T T15624C A23403G G25563T C25904T C27964T C28099T T28160C

EPI_ISL_445161
 2020-04-07 2020-05-15
 United States hCoV-19/USA/LA-SR0306/2020
 C241T AAGTCATTT686- C1059T C3037T C7765T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_445583
 2020-04-07 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A55C/2020
 C241T C3037T C14408T A21999G A23403G C23709T T26512C

EPI_ISL_445585
 2020-04-07 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A57A/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T T4186C G11801A C14408T T19839C C23127T A23403G G25552T GGG28881AAC

EPI_ISL_445601
 2020-04-07 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A677/2020
 ATTA1- C241T C1059T C3037T C10376T C14408T G18583T A23403G G24368T G25563T G29773T

EPI_ISL_445625
 2020-04-07 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A835/2020
 C241T C3037T C14408T A23403G

EPI_ISL_445628
 2020-04-07 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A871/2020
 A1- C241T C3037T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_445631
 2020-04-07 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A8AE/2020
 C241T C3037T C14408T A23403G T29264C

EPI_ISL_445632
 2020-04-07 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A8CC/2020
 C241T C3037T C9344T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_445638
 2020-04-07 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A932/2020
 AT1- C241T C3037T T3100G G10097A C13584T C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_445641
 2020-04-07 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A96F/2020
 C241T G368T C3037T C14408T G21624T A23403G G25598T GGG28881AAC

EPI_ISL_445654
 2020-04-07 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2AA3F/2020
 G1148T A1515G C8782T C9223T G11083T C14805T T17247C G26144T

EPI_ISL_445672
 2020-04-07 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2AB78/2020
 ATT1- C241T C1326Y C3037T G4510A C14408T A23403G C29218T

EPI_ISL_445673
 2020-04-07 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2AB87/2020
 C241T C3037T C4069T C14408T A23403G GGG28881AAC

EPI_ISL_447816
 2020-04-07 2020-05-18
 Colombia hCoV-19/Colombia/GVI97517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C14408T A20268G C22000T A23403G C28854T AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_447896 MT481936
 2020-04-07 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1145/2020
 ATTAAAGGTTTA1- G2840A C8782T C17747T A17858G C18060T A26045G T28144C

EPI_ISL_447903
 2020-04-07 2020-05-18
 United States hCoV-19/USA/FL-UF10/2020
 ATTAAAGGTTT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C23606T C24138T C25350T A25744G

EPI_ISL_448129
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1805/2020
 A2480G C2558T G3251A C7926T G11083T C14805T C16887T G26144T C27600T

EPI_ISL_448130
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1806/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_448131
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1822/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_448132
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1825/2020
 C241T C3037T C14408T C21638T A23403G GGG28881AAC

EPI_ISL_448134
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1840/2020
 C241T C3037T G4207T G5425T C14408T C18744T A23403G GGG28881AAC

EPI_ISL_448449
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC428/2020
 C92T C241T C3037T C7765T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_448451
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC446/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC

EPI_ISL_448454
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC4A0/2020
 C92T C241T C3037T C7765T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_448457
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC507/2020
 C241T C3037T C14408T C22858T A23403G GGG28881AAC

EPI_ISL_448461
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC561/2020
 C4832T G11083T C14805T G26144T G28842T

EPI_ISL_448463
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC5AD/2020
 A187G C241T C3037T C14408T A21037G A23403G

EPI_ISL_448465
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC5CB/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC

EPI_ISL_448467
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC604/2020
 G1440A G2891A C7011T

EPI_ISL_448469
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC622/2020
 C241T C313T C3037T G4109A C8090T C14408T A23403G G25456T T27401C GGG28881AAC

EPI_ISL_448471
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC640/2020
 G152K T181K A187R T191W C241T C3037T C9430T C14408T C16289T A23403G G25429T C27046T

EPI_ISL_448473
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC68C/2020
 C241T C3037T C9430T C14408T C16289T A23403G G25429T C27046T

EPI_ISL_448481
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC74D/2020
 T83K T95K T99K C241T C3037T C14408T T18831C A23403G GGG28881AAC

EPI_ISL_448482
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC789/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC

EPI_ISL_448488
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC868/2020
 C241T C3037T C14408T C18526T A23403G GGG28881AAC A29088T

EPI_ISL_448495
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC929/2020
 C241T C3037T C14408T T18831C C20762T A23403G GGG28881AAC

EPI_ISL_448498
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC983/2020
 C241T G2778A C3037T C3045T G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_448501
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AC9ED/2020
 C241T C3037T C14408T G22201T A23403G C26447T GGG28881AAC

EPI_ISL_448502
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACA08/2020
 C241T C1059T C1376T C3037T C9693T C14408T A23403G G24368T C25006T G25563T

EPI_ISL_448549
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACFAF/2020
 C241T C3037T C4927T A10948G G11083T C14408T A23403G C27542T GGG28881AAC

EPI_ISL_448553
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD005/2020
 C241T C3037T C13378T C14408T A23403G GGG28881AAC

EPI_ISL_448555
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD041/2020
 G11083T C14805T C18570T G25769T G26144T G28842T

EPI_ISL_448557
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD08D/2020
 C241T C3037T C14408T C22858T A23403G GGG28881AAC

EPI_ISL_448559
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD0AB/2020
 C241T G533A C3037T C14408T C21145T A23403G GGG28881AAC

EPI_ISL_448561
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD0C9/2020
 C241T C3037T C14408T A20268G A23403G C28854T G28968T

EPI_ISL_448784
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEDB2/2020
 C241T G1729A C3037T C14408T G19735T C20031A A23403G C27046T A28081C GGG28881AAC

EPI_ISL_448791
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEE91/2020
 C241T C1288T C3037T C6723T C14408T A23403G GGG28881AAC C29249T C29409T

EPI_ISL_448797
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEF43/2020
 C241T C3037T C14408T A23403G

EPI_ISL_448801
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEFBC/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448804
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEFF8/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448808
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF09A/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448811
 2020-04-07 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF0F4/2020
 T41A C241T C3037T C9430T C14408T C16289T A23403G G25429T C27046T A29890W A29894T

EPI_ISL_449816 MT535487
 2020-04-07 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01562/2020
 C241T T833C C1059T C3037T C14408T A22320G A23403G G25563T C27964T

EPI_ISL_449817 MT535488
 2020-04-07 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01564/2020
 C241T C3037T C14408T A23403G C26256T C29668T C29870A

EPI_ISL_449818 MT535489
 2020-04-07 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01566/2020
 C241T C3037T C5184T C14408T A23403G C26256T C29668T

EPI_ISL_449819 MT535490
 2020-04-07 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01568/2020
 C241T C1059T C3037T C14408T C21757T A23403G G25563T G28908T C29870A

EPI_ISL_449820 MT535491
 2020-04-07 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01570/2020
 C8782T C17747T A17858G C18060T T23287C A24694T G26227A T28144C C29870A

EPI_ISL_449821 MT535492
 2020-04-07 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01572/2020
 C241T C3037T C5184T C14408T A23403G C26256T C29668T

EPI_ISL_449822 MT535493
 2020-04-07 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01573/2020
 C241T C1059T C3037T C14408T A23403G C24378T G25563T C27964T C29870A

EPI_ISL_449823 MT535494
 2020-04-07 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01575/2020
 G6554R C8782T C17747T A17858G C18060T T23287C A24694T G26227A T28144C

EPI_ISL_449824 MT535495
 2020-04-07 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01578/2020
 C241T C3037T C14408T A23403G

EPI_ISL_449825 MT535496
 2020-04-07 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01579/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G C24378T G25563T C27964T

EPI_ISL_449826 MT535497
 2020-04-07 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01581/2020
 C241T C3037T C14408T A23403G

EPI_ISL_449830 MT535501
 2020-04-07 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01587/2020
 C241T C1059T C3037T C7119T C14408T A23403G G25563T

EPI_ISL_449831 MT535502
 2020-04-07 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T A1168M C3037T C14408T A23403G G25563T

EPI_ISL_449846 MT641624
 2020-04-07 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S676/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_449847 MT641629
 2020-04-07 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S677/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_449848 MT641632
 2020-04-07 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S678/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_449849 MT641627
 2020-04-07 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S679/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_449853 MT641494
 2020-04-07 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S683/2020
 C241T C1059T C3037T A3421G G3955T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_449877 MT641564
 2020-04-07 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S707/2020
 G1401A C8782T T13438C C17747T A17858G C18060T T28144C C28697T

EPI_ISL_449880 MT641608
 2020-04-07 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S710/2020
 C7173T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_449882 MT641578
 2020-04-07 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S712/2020
 C241T C3037T C13665A C14408T A23403G GGG28881AAC

EPI_ISL_449884 MT641537
 2020-04-07 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S714/2020
 C241T C1059T C3037T T8431C C14408T A23403G G25563T G29553A

EPI_ISL_450177
 2020-04-07 2020-05-20
 United States hCoV-19/USA/LA-SR0323/2020
 C241T C1059T C3037T T12828C C14408T A23403G A24952G G25563T C27964T C28826T

EPI_ISL_450186
 2020-04-07 2020-05-20
 Jordan hCoV-19/Jordan/SR-0333/2020
 G11083T C14805T G26144T G28842T

EPI_ISL_451175
 2020-04-07 2020-05-23
 Belgium hCoV-19/Belgium/UGent-64/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_451875 LR824436
 2020-04-07 2020-05-25
 Switzerland 110455
 C241T G1355T C3037T G10097R C10228Y G10265R G10289R C14408T A19508M T22416Y A23403G C23731T G28122A GGG28881AAC

EPI_ISL_451914 LR824473
 2020-04-07 2020-05-25
 Switzerland 110508
 C241T C3037T C6128A C10969T C14408T C15324T G17110T C17822Y A19298W C21997Y A22456W T22497Y T22516W A23403G

EPI_ISL_451976 MT511071
 2020-04-07 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P15/2020
 C241T C3037T C8175T A13192M C14408T T18927C A23403G G23782T G25340A C29870M

EPI_ISL_451981 MT511076
 2020-04-07 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P20/2020
 T10A T13A C19T C106T C241T C3037T A8072G C14408T A23403G GGG28881AAC T29867W C29870M

EPI_ISL_451986 MT511081
 2020-04-07 2020-05-26
 Poland SARS-CoV-2/human/POL/PL_P25/2020
 C19T C106T C241T C3037T A8072G C14408T C20801T A23403G GGG28881AAC C29870M

EPI_ISL_452214
 2020-04-07 2020-05-27
 India hCoV-19/India/NIV-QA-709/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3634T C14408T C15324T A23403G C26461T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_454255
 2020-04-07 2020-05-28
 Portugal hCoV-19/Portugal/PT0531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C3037T C13680T C14408T C17104T A23403G A26530G CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454257
 2020-04-07 2020-05-28
 Portugal hCoV-19/Portugal/PT0533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- -11075TTT G11083T C12778T C14805T T17247C C23320T G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454258
 2020-04-07 2020-05-28
 Portugal hCoV-19/Portugal/PT0534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G9856T -11075TTT G11083T C12778T C14805T T17247C G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454260
 2020-04-07 2020-05-28
 Portugal hCoV-19/Portugal/PT0536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C10279T C14408T T21237A A21270G A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454261
 2020-04-07 2020-05-28
 Portugal hCoV-19/Portugal/PT0537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T G11417T C14408T A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454262
 2020-04-07 2020-05-28
 Portugal hCoV-19/Portugal/PT0538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A6626G C14408T C22208T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454263
 2020-04-07 2020-05-28
 Portugal hCoV-19/Portugal/PT0539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C955T C958T C3037T C3140T C14408T C17733T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454274
 2020-04-07 2020-05-28
 Portugal hCoV-19/Portugal/PT0551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C9778T C14408T C17104T A23403G G24077T G24535T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454275
 2020-04-07 2020-05-28
 Portugal hCoV-19/Portugal/PT0552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T617C C3037T C3140T C9778T C14408T C17104T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454277
 2020-04-07 2020-05-28
 Portugal hCoV-19/Portugal/PT0554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454403
 2020-04-07 2020-05-28
 United States hCoV-19/USA/PA-MGEL143/2020
 C241T T1918C C3037T C14408T C18877T C23230T A23403G C23533T G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454408
 2020-04-07 2020-05-28
 United States hCoV-19/USA/PA-MGEL151/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454409
 2020-04-07 2020-05-28
 United States hCoV-19/USA/PA-MGEL152/2020
 C241T C1059T C3037T C14408T C15251T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454551
 2020-04-07 2020-05-28
 India hCoV-19/India/NIV-7893/2020
 C6312A G11083T C12242T C13730T G14181A C23929T C28311T A29827T G29830T

EPI_ISL_454642 MT532437
 2020-04-07 2020-05-28
 United States SARS-CoV-2/human/USA/CT-CDC-6001/2020
 C241T C1059T C3037T G6209A C11916T C14408T C18998T A23403G C23496M G25563T C28269T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_454794
 2020-04-07 2020-05-29
 Netherlands hCoV-19/Netherlands/NoordBrabant_10045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- T514C ATG1605- C17410T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_455159
 2020-04-07 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455160
 2020-04-07 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T C17125T T17247C G26144T G27201T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455161
 2020-04-07 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14184T C14408T A23403G C23731T A28305G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455162
 2020-04-07 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C A11740G C14408T A23403G C27643T GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455163
 2020-04-07 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T C13502T C14408T A16179G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455194
 2020-04-07 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455236
 2020-04-07 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T AAC23228- A23403G C23709T A24036G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455237
 2020-04-07 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G C25904T C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455238
 2020-04-07 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G C26313T GGG28881AAC G29628T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455297
 2020-04-07 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C11008T G11083T C14805T C17125T T17247C G26144T G27201T C27610T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455298
 2020-04-07 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C14408T A23403G C24381T A24862G G27676C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455299
 2020-04-07 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455302
 2020-04-07 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455480
 2020-04-07 2020-05-30
 Serbia hCoV-19/Serbia/CA3002-04/2020
 C241T C3037T C7318T C14408T C18877T A23403G G25563T G26526T

EPI_ISL_455610 MT536177
 2020-04-07 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455612 MT536179
 2020-04-07 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455613 MT536180
 2020-04-07 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C10319T C14408T C16289T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455616 MT536183
 2020-04-07 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C9724T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455622 MT536189
 2020-04-07 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455961
 2020-04-07 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10173/2020
 C241T G1306T C3037T C4002T G10097A G12482A C13536T C14408T A23403G C23731T GGG28881AAC C29108T

EPI_ISL_455979
 2020-04-07 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10191/2020
 C241T C3037T C7321T G8174A C14408T C18557T A23403G GGG28881AAC

EPI_ISL_457028
 2020-04-07 2020-06-02
 United Kingdom hCoV-19/England/EXET-135098/2020
 C241T C3037T C14408T A23403G C28720T GGG28881AAC

EPI_ISL_457029
 2020-04-07 2020-06-02
 United Kingdom hCoV-19/England/EXET-1350A7/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457050
 2020-04-07 2020-06-02
 United Kingdom hCoV-19/England/EXET-135353/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457051
 2020-04-07 2020-06-02
 United Kingdom hCoV-19/England/EXET-135362/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457077
 2020-04-07 2020-06-02
 United Kingdom hCoV-19/England/EXET-13561E/2020
 ATG1605- G14335T

EPI_ISL_457133
 2020-04-07 2020-06-02
 United Kingdom hCoV-19/England/EXET-135AE5/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457138
 2020-04-07 2020-06-02
 United Kingdom hCoV-19/England/EXET-135B6A/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_458122
 2020-04-07 2020-06-03
 Oman hCoV-19/Oman/205027285/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C8832T G10265A C14408T C16293T C19269T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_458140
 2020-04-07 2020-06-03
 Brazil hCoV-19/Brazil/PA162802-IEC/2020
 C241T C3037T A6319G C14408T A23403G G25088T T26149C GGG28881AAC

EPI_ISL_458256
 2020-04-07 2020-06-04
 United States hCoV-19/USA/CA-SR0373/2020
 C241T C1059T C1887T C3037T C6070T C14408T C19269T A23403G G25563T

EPI_ISL_458260
 2020-04-07 2020-06-04
 United States hCoV-19/USA/CA-SR0379/2020
 C241T G942A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_458275
 2020-04-07 2020-06-04
 United States hCoV-19/USA/CA-SR0404/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_459098
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173C30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3831A T7441C C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459107
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173B24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G G11083T C11344T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459112
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173CF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28377T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459113
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-1739EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T T21644C C26447T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459114
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173D79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459119
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173D4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459121
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173C6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459130
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173CC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A T13258C C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459133
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173A90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17278T C19610T A23403G G25429T T26906C G29688T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459136
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173A45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459138
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-1739FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6690Y C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459142
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173BAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C13743Y C14805T G23868T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459146
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173BF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6040T C14408T C22879A A23403G T23437C C29485Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459147
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173CD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5817T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459155
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173CA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G8027T A9483R C9491Y G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459161
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173B42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189T C241T C3037T C14408T A23403G GGG28881AAC C29738Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459165
 2020-04-07 2020-06-04
 United Kingdom hCoV-19/Scotland/GCVR-173D1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G C28844T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460106 MT520181
 2020-04-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00707/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_460112 MT520187
 2020-04-07 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00708/2020
 ATTAAA1- C241T C2062T C2416T C3037T C14408T G17988A C18928T G19009T A23403G G25563T G26233T AAAAAA29898-

EPI_ISL_460642
 2020-04-07 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G18281A A20742G A20755C A23403G G25563T G25784T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460644
 2020-04-07 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T809C C1059T C3037T A5229G C14408T G18281A A20755C A23403G G25563T G25784T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460646
 2020-04-07 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G18281A A20755C A23403G G25563T G25784T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460647
 2020-04-07 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4113T C6555T C14408T G18281A A20755C A23403G G25563T C25731T G25784T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460669
 2020-04-07 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460826
 2020-04-07 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14284A C14408T C20148T A23403G C25276T G28077T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460827
 2020-04-07 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460828
 2020-04-07 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461033
 2020-04-07 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461034
 2020-04-07 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461037
 2020-04-07 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3044T T11638C C14408T G21786T A23403G C27549T GGG28881AAC G29422T C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461122
 2020-04-07 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T C26681T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461242
 2020-04-07 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G410T A2775G C3037T G4255T C14408T A20355G A23403G C24621T C26461T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461434
 2020-04-07 2020-06-06
 United States hCoV-19/USA/WA-UW-5016/2020
 ATTAAAGGTTTATAC1- CCCAGGTAACAAAC19- C33T C36T C241T C1059T C3037T C14408T A23403G G25563T -29871GAGAAAAAAAAA

EPI_ISL_462248
 2020-04-07 2020-06-08
 Belgium hCoV-19/Belgium/SB-0407394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462249
 2020-04-07 2020-06-08
 Belgium hCoV-19/Belgium/GM-0407395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462257
 2020-04-07 2020-06-08
 Belgium hCoV-19/Belgium/EM-0407403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1613T C3037T C14408T C15324T G18498T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462258
 2020-04-07 2020-06-08
 Belgium hCoV-19/Belgium/AO-04074040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2401T C3037T G4255T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462259
 2020-04-07 2020-06-08
 Belgium hCoV-19/Belgium/PY-0407405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C20956T A23403G C27874T G28817T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462353
 2020-04-07 2020-06-08
 Singapore hCoV-19/Singapore/235/2020
 C1427T C6310A C6312A G11083T C13730T C19524T A20243T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462354
 2020-04-07 2020-06-08
 Singapore hCoV-19/Singapore/236/2020
 C6310A C6312A G8889R G11083T C13730T C19524T G21718R C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462356
 2020-04-07 2020-06-08
 Singapore hCoV-19/Singapore/238/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462377
 2020-04-07 2020-06-08
 Singapore hCoV-19/Singapore/259/2020
 C6310A C6312A A6761R T6820W G11083T C13730T C18131Y C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462383
 2020-04-07 2020-06-08
 Singapore hCoV-19/Singapore/265/2020
 C1427T C6310A C6312A G11083T C13730T C19524T T21226Y C23929T C25207Y C28311T AAAAAAAAAAAA29892-

EPI_ISL_462384
 2020-04-07 2020-06-08
 Singapore hCoV-19/Singapore/266/2020
 C6310A C6312A G11083T C13730T C19524T C23929T T25485C C28311T AAAAAAAAAAAA29892-

EPI_ISL_462413
 2020-04-07 2020-06-08
 Singapore hCoV-19/Singapore/295/2020
 C241T C3037T C14408T A23403G G25429T G28985K AAAAAAAAAAAA29892-

EPI_ISL_463290 MT585095
 2020-04-07 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-042/2020
 C241T C1059T C3037T C10188T C14408T G18255T A23403G T24982C G25563T C27964T

EPI_ISL_463292 MT585097
 2020-04-07 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-044/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_463909
 2020-04-07 2020-06-11
 Canada hCoV-19/Canada/QC_AF1/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_463918
 2020-04-07 2020-06-11
 Canada hCoV-19/Canada/QC_AI9/2020
 C241T C2260T C3037T C8293T C14408T T18488C A23403G T24739C A26530G

EPI_ISL_463962
 2020-04-07 2020-06-11
 Canada hCoV-19/Canada/QC_BA5/2020
 C241T AAGTCATTT686- C3037T C14408T A20268G GTG22578ACA A23403G C26313T

EPI_ISL_464004
 2020-04-07 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0053/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28368A

EPI_ISL_464033
 2020-04-07 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0035/2020
 C241T C313T C3037T C14408T C14724T A23403G C28331T GGG28881AAC G29781T

EPI_ISL_464065
 2020-04-07 2020-06-11
 Belgium hCoV-19/Belgium/BT-0407271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1181T C3037T C14408T T19839C C21646T A23403G C26846T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464066
 2020-04-07 2020-06-11
 Belgium hCoV-19/Belgium/GSS-0407272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464068
 2020-04-07 2020-06-11
 Belgium hCoV-19/Belgium/MI-0407274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13947T C14408T C20594T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464074
 2020-04-07 2020-06-11
 Belgium hCoV-19/Belgium/BD-0407280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25563T C27769T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464076
 2020-04-07 2020-06-11
 Belgium hCoV-19/Belgium/rega-0407282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8394T C13356T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464077
 2020-04-07 2020-06-11
 Belgium hCoV-19/Belgium/rega-0407283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1142T C3037T C14408T C15324T T15573C A23403G C27434T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464081
 2020-04-07 2020-06-11
 Belgium hCoV-19/Belgium/rega-0407287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11801A C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464082
 2020-04-07 2020-06-11
 Belgium hCoV-19/Belgium/rega-0405288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464122
 2020-04-07 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_11/2020
 C241T A454G G2198A A5209G C6255T T6552G G7472A T8022G C10834T C14408T C15952T T20891G A23403G AG24389CC A24862G

EPI_ISL_464152
 2020-04-07 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_43/2020
 C241T T8022G C14408T T16211G T20891G A23403G AG24389CC G28300T GGG28881AAC

EPI_ISL_465275
 2020-04-07 2020-06-11
 United Kingdom hCoV-19/England/20170031904/2020
 C241T C3037T C5826Y C14408T A23403G GGG28881AAC

EPI_ISL_466259
 2020-04-07 2020-06-11
 United Kingdom hCoV-19/England/20154074204/2020
 A2480G C2558T C7011T G11083T C14805T C19862Y C23533T G26144T

EPI_ISL_466267
 2020-04-07 2020-06-11
 United Kingdom hCoV-19/England/20154082104/2020
 C241T C3037T C3373A C11195T C14408T C15216T G22410K A23403G GGG28881AAC

EPI_ISL_466272
 2020-04-07 2020-06-11
 United Kingdom hCoV-19/England/20154083604/2020
 C241T C3037T C3373A C11195T C14408T C15216T A23403G GGG28881AAC

EPI_ISL_466311
 2020-04-07 2020-06-11
 United Kingdom hCoV-19/England/20156041604/2020
 GTTATG515- G1440A C2263T C2574T G2891A C16466Y A27669G A29898G

EPI_ISL_466328
 2020-04-07 2020-06-11
 United Kingdom hCoV-19/England/20156048204/2020
 G13627T C14805T C15540T C23525T G26144T A28338G

EPI_ISL_466338
 2020-04-07 2020-06-11
 United Kingdom hCoV-19/England/20156050804/2020
 C241Y C3037Y A5220W G11083T G13627K C14408Y C14599Y C14805Y C15540Y C19170Y G19509R A23403R C23525Y G26144T A28338R GGG28881RRS

EPI_ISL_466343
 2020-04-07 2020-06-11
 United Kingdom hCoV-19/England/20156053104/2020
 C241T C1059T C3037T C14408T C18388T C18555T A23403G G25563T T28921K

EPI_ISL_467263
 2020-04-07 2020-06-12
 Spain hCoV-19/Spain/COV002714/2020
 C241T C3037T C14408T A20268G A23403G T27539G

EPI_ISL_467278
 2020-04-07 2020-06-12
 Spain hCoV-19/Spain/COV002710/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_467295
 2020-04-07 2020-06-12
 Spain hCoV-19/Spain/COV002723/2020
 C241T C3037T A5101R C14408T G17035A A20268G A23403G A23592C

EPI_ISL_467457
 2020-04-07 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0088/2020
 C241T C3037T C14408T C16376T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_468025
 2020-04-07 2020-06-16
 Australia hCoV-19/Australia/SAP297/2020
 ATTA1- A187G C241T C3037T G11083T C12076T C14408T A23403G

EPI_ISL_468027
 2020-04-07 2020-06-16
 Australia hCoV-19/Australia/SAP253/2020
 C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T

EPI_ISL_468415 MT628150
 2020-04-07 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1452/2020
 T11K C241T C379A C1059T C3037T C9448T C14408T C17440Y A23403G G25563T C27739Y

EPI_ISL_468503
 2020-04-07 2020-06-16
 United States hCoV-19/USA/CA-CZB-1570/2020
 C241T C3037T G10793T C14408T C18877T A23403G A23566G G25563T G27514T G28028T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_468538 MT628261
 2020-04-07 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1609/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468651 MT631841
 2020-04-07 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1728/2020
 C241T C1059T C3037T C14408T A23403G A25327G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468652 MT631842
 2020-04-07 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1729/2020
 A1- C241T C1059T C3037T C14408T A23403G A25327G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468705
 2020-04-07 2020-06-17
 United States hCoV-19/USA/LA-BIE-009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468708
 2020-04-07 2020-06-17
 United States hCoV-19/USA/LA-BIE-016/2020
 C241T C344T C1059T C3037T C10319T C14408T G18891A C19170T A23403G G25563T C27964T

EPI_ISL_468709
 2020-04-07 2020-06-17
 United States hCoV-19/USA/LA-BIE-018/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_469109
 2020-04-07 2020-06-17
 Singapore hCoV-19/Singapore/354/2020
 C207Y C6310A C6312A G11083T C13730T G13920A C19524T G23755K C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469112
 2020-04-07 2020-06-17
 Singapore hCoV-19/Singapore/357/2020
 T400C C6310A C6312A T6895Y C10336Y G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_470466
 2020-04-07 2020-06-18
 United Kingdom hCoV-19/England/CAMB-801D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T AT20284TC G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470861
 2020-04-07 2020-06-19
 Australia hCoV-19/Australia/WA44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T C17104T A20268G A23403G C29200T G29734C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471924
 2020-04-07 2020-06-23
 United Kingdom hCoV-19/England/EXET-136DAF/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_472940
 2020-04-07 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1604B6/2020
 AT1- C241T G1135T C3037T G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_475122
 2020-04-07 2020-06-23
 Sweden hCoV-19/Sweden/20-51061/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_475539
 2020-04-07 2020-06-23
 Sweden hCoV-19/Sweden/20-07017/2020
 C241T C1059T C3037T C14408T G15380T A21367C A23403G G25563T G29449T

EPI_ISL_475667
 2020-04-07 2020-06-23
 United States hCoV-19/USA/CA-CSMC54/2020
 C241T C379A C1059T C3037T C9226T C14408T C18452T A23403G G25563T C29421T

EPI_ISL_475668
 2020-04-07 2020-06-23
 United States hCoV-19/USA/CA-CSMC55/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T C29769T

EPI_ISL_475698
 2020-04-07 2020-06-23
 United States hCoV-19/USA/CA-CSMC82/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475715
 2020-04-07 2020-06-23
 United States hCoV-19/USA/CA-CSMC98/2020
 C241T C1059T C3037T C14408T T16477G A23403G G25563T G28882T C28887T C29253T

EPI_ISL_475812
 2020-04-07 2020-06-25
 Austria hCoV-19/Austria/CeMM0355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9530K C26088T T27801C T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475900
 2020-04-07 2020-06-25
 Austria hCoV-19/Austria/CeMM0538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11412T T13258C C14408T A23403G T23487K T23677K C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475901
 2020-04-07 2020-06-25
 Austria hCoV-19/Austria/CeMM0539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476510
 2020-04-07 2020-06-25
 Canada hCoV-19/Canada/QC_AP8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477010
 2020-04-07 2020-06-27
 Hungary hCoV-19/Hungary/UD-6802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C4752T C14408T A23403G C26326T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477195
 2020-04-07 2020-06-29
 Italy hCoV-19/Italy/IZSPB_4162/2020
 A1GGTCACGGA C28T C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC A29880C A29882C AAAAA29884TGGGG AAAAAAAAAAAAAA29890T

EPI_ISL_479762
 2020-04-07 2020-07-01
 United States hCoV-19/USA/FL-Miami-04_UMTL-975H/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_480126
 2020-04-07 2020-07-01
 Japan hCoV-19/Japan/PG-0465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480153
 2020-04-07 2020-07-01
 Japan hCoV-19/Japan/PG-0494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480157
 2020-04-07 2020-07-01
 Japan hCoV-19/Japan/PG-0498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480164
 2020-04-07 2020-07-01
 Japan hCoV-19/Japan/PG-0505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480165
 2020-04-07 2020-07-01
 Japan hCoV-19/Japan/PG-0506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480166
 2020-04-07 2020-07-01
 Japan hCoV-19/Japan/PG-0507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T G11083T C14408T A23403G T27384C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480167
 2020-04-07 2020-07-01
 Japan hCoV-19/Japan/PG-0508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480168
 2020-04-07 2020-07-01
 Japan hCoV-19/Japan/PG-0509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T C3037T G11083T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480205
 2020-04-07 2020-07-01
 Japan hCoV-19/Japan/PG-0552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C106T C241T C313T C3037T C14408T A23403G GGG28881AAC G28908T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480206
 2020-04-07 2020-07-01
 Japan hCoV-19/Japan/PG-0555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C5221T C10252T C14408T A23403G G25447A GGG28881AAC G29764T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480207
 2020-04-07 2020-07-01
 Japan hCoV-19/Japan/PG-0556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C823T C3037T C14408T A23403G GGG28881AAC TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_480208
 2020-04-07 2020-07-01
 Japan hCoV-19/Japan/PG-0557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G25424T G26730A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480209
 2020-04-07 2020-07-01
 Japan hCoV-19/Japan/PG-0559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G G26730A GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480395 MT772562
 2020-04-07 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5884T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481276 MT704130
 2020-04-07 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T490A C3177T C3717T C8782T C9745T T13180C C16084T T18736C C24034T T26729C G28077C T28144C T29867G

EPI_ISL_481277 MT704131
 2020-04-07 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C10747T C14408T A23403G G25563T

EPI_ISL_481278 MT704132
 2020-04-07 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0033/2020
 ATTA1- C28A C241T C1059T C3037T G6404T C14408T A23403G G25563T G29690T

EPI_ISL_481279 MT704133
 2020-04-07 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C14408T A23403G G25563T C29666T G29690T G29868A

EPI_ISL_481280 MT704134
 2020-04-07 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0035/2020
 ATTAA1- C241T C1059T C3037T C5826T C14408T A23403G G25563T G29690T T29867A

EPI_ISL_481281 MT704135
 2020-04-07 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0036/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T G29690T

EPI_ISL_481754
 2020-04-07 2020-07-03
 Canada hCoV-19/Canada/NB_264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482296
 2020-04-07 2020-07-03
 United States hCoV-19/USA/OR-PROV-007/2020
 C241T C3037T C14408T G20980A A23403G

EPI_ISL_482461
 2020-04-07 2020-07-03
 United States hCoV-19/USA/OR-PROV-226/2020
 C5526T G11083T C14805T G24992C G25091C G26144T A26742G

EPI_ISL_483199
 2020-04-07 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0521-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T A2647G C3037T C14408T A23403G G25563T

EPI_ISL_483260
 2020-04-07 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0616-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T AAGTCATTT686- C1059T G1944A G2808A C3037T C9967T G14055T C14408T A23403G G25563T A26433G

EPI_ISL_483355
 2020-04-07 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0783-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T

EPI_ISL_483356
 2020-04-07 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0786-IPL/2020
 ATTAA1- C21T C241T C1059T A2647G C3037T C14408T A23403G G25563T

EPI_ISL_483357
 2020-04-07 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0787-SAN/2020
 C241T C1059T C3037T C14408T C16762T A23403G G25563T G25660T

EPI_ISL_483358
 2020-04-07 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0788-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T AAGTCATTT686- C1059T G1944A G2808A C3037T C9967T C14408T A23403G G25563T A26433G

EPI_ISL_483359
 2020-04-07 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0789-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C7765A C14408T A23403G GGG28881AAC

EPI_ISL_483674
 2020-04-07 2020-07-08
 Switzerland hCoV-19/Switzerland/C1_381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C398Y C3037T C11003Y C14408T C15324T T19401Y G22403R T22441Y A23403G C25513T T26726C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_484520
 2020-04-07 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR1874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20031T A23403G T26076A C27434T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484526
 2020-04-07 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR1933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A16579G A23403G G25563T C26111T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484702
 2020-04-07 2020-07-08
 Belgium hCoV-19/Belgium/ULG-10214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484703
 2020-04-07 2020-07-08
 Belgium hCoV-19/Belgium/ULG-10215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486915 MT742090
 2020-04-07 2020-07-10
 United States SARS-CoV-2/human/USA/MD-MDH-0029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2416T C3037T C14408T A23403G G25563T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_486916 MT742091
 2020-04-07 2020-07-10
 United States SARS-CoV-2/human/USA/MD-MDH-0037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C2416T C3037T A6869T C14408T A23403G G25563T G26233T C27654A C27657A G29868- AAAAAA29898-

EPI_ISL_487719
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487720
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487745
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2669T C3037T C6690T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487821
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487875
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- -11075TTT G11083T C14805T T16820C T19074C G26144T G26690T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487892
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487960
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488881
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G G24764T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488896
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G188A C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488898
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G A26009G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488904
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3444T C5907T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488907
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G188A C241T G343T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488908
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488921
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488936
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488946
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G G24764K C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488952
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T C10582T C14408T A23403G AG25562GT C28310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488953
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T C10582T C14408T A23403G AG25562GT C28310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488960
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G24821T G28460T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488966
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G188A C241T C3037T C3817T G10097A C14408T A16076C A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488968
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6578T C14408T C18348T A23403G AAATTG26096- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488971
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488975
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2201A C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488983
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G A26009G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488998
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11941T C14408T T14901C C22879A A23403G A28777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489011
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G G24764T C28531Y C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489012
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9223T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489024
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489036
 2020-04-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C6428T C14408T C18714Y A23403G G24928T G27214T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491155
 2020-04-07 2020-07-16
 Oman hCoV-19/Oman/11374/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C2836T C3037T C14408T C16726T C18877T A20458G C22444T A23403G G25563T C26735T C28854T G29513T AGGAG29860- G29868C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_491908 MT776402
 2020-04-07 2020-07-17
 United States SARS-CoV-2/human/USA/MD_NIDDL_2981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491926 MT776420
 2020-04-07 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_2996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12664T C14408T A23403G C25490A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491927 MT776421
 2020-04-07 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_3033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T C27416T G28086T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491933
 2020-04-07 2020-07-17
 Ecuador hCoV-19/Ecuador/USFQ-128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G A26530G C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491934
 2020-04-07 2020-07-17
 Ecuador hCoV-19/Ecuador/USFQ-129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_492599
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FCBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T A23403G C25528T G25970T G26918T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492639
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FC8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492652
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FC7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1721R A2480G C2558T A7479R G11083T C11704T G12801A C14805T C16375Y C24378T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492688
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FC9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C3037T G7798T C12786T C14408T A20268G A23403G C27577T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492689
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FCCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492720
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FCAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492768
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123CE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3475C C14408T C19402T A23403G C28606T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492775
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1240BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492776
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1240F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492777
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123D2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492783
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1240C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492785
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12418A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6352T C14408T C18877Y C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492791
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-124199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T C14408T G19300T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492801
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123CA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2706T A7025G C9724T G11083T C14805T A22116G C24909A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492808
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123F90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T889C C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492819
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123CB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A15257G T19003Y A23403G C27167T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492834
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12416C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C14408T A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492847
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C5AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8025T C11074T C14408T A20268G A23403G C27509T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492885
 2020-04-07 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C11195T C14408T C15216T A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495299 MT791936
 2020-04-07 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G61T C241T C1059T C3037T C14408T C14925T A23403G G25563T

EPI_ISL_495599
 2020-04-07 2020-07-23
 United States hCoV-19/USA/MN-MDH-1300/2020
 A1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_496918
 2020-04-07 2020-07-24
 United States hCoV-19/USA/MN-MDH-1332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_497823
 2020-04-07 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11575T A11595G C14408T C20692T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499330
 2020-04-07 2020-07-28
 United Kingdom hCoV-19/England/SHEF-C292D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C11750T C13381T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499348
 2020-04-07 2020-07-28
 United Kingdom hCoV-19/England/SHEF-CE9B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18803T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500460
 2020-04-07 2020-07-28
 Brazil hCoV-19/Brazil/PE-IAM08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C23625T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_500486
 2020-04-07 2020-07-28
 Brazil hCoV-19/Brazil/PE-IAM89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_501170
 2020-04-07 2020-07-30
 United States hCoV-19/USA/TX-GCID-192000251/2020
 A1T C241T C1059T C3037T C14408T A23403G G25563T -29869CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGT AAA29872GTG A29877C -AA29880TGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTGG A29884G AA29887TG A29890C AAA29896TGG A29901G A29903GCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATG

EPI_ISL_501171
 2020-04-07 2020-07-30
 United States hCoV-19/USA/TX-GCID-192000254/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C15324T A23403G C29409T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_501218
 2020-04-07 2020-07-31
 Malaysia hCoV-19/Malaysia/6216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C2508A C6310A C6312A G11083T C13730T C19524T TACATG21765- C23929T T26397Y G27261T C27536Y C28311T C29870A

EPI_ISL_501219
 2020-04-07 2020-07-31
 Malaysia hCoV-19/Malaysia/6306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T7621C C10776T -11075TTT G11083T C13730T C21627T C23929T C25549T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_507082
 2020-04-07 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D2FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A G6463T A24178G A27669G C29364T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507178
 2020-04-07 2020-08-03
 United Kingdom hCoV-19/England/SHEF-D32E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21614T A23403G G27556T C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508916
 2020-04-07 2020-08-04
 France hCoV-19/France/ARA21170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- C241T C2416T C3037T G8371T C14408T A23403G G25563T G26199A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508989
 2020-04-07 2020-08-04
 France hCoV-19/France/ARA21360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T T6511C C14408T A23403G G25563T TAAAGTTTCCATTTGGAATCTTGATTACATCATA27267- AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_508991
 2020-04-07 2020-08-04
 France hCoV-19/France/ARA21154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G11804T A11935C C14408T C15324T C17172T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508992
 2020-04-07 2020-08-04
 France hCoV-19/France/ARA21163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T T6511C C14408T A23403G G25563T TAAAGTTTCCATTTGGAATCTTGATTACATCATA27267- G27667A G29422T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508993
 2020-04-07 2020-08-04
 France hCoV-19/France/ARA21210/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_508994
 2020-04-07 2020-08-04
 France hCoV-19/France/ARA21399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T C15324T G21399T A23403G C27513T C27874T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_510391
 2020-04-07 2020-08-06
 Spain hCoV-19/Spain/COV004272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C8782T C16466T C21575T C26088T T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510393
 2020-04-07 2020-08-06
 Spain hCoV-19/Spain/COV004274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C20987T A23403G GGG28881AAC C29762T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_513164
 2020-04-07 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH515/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C29095T

EPI_ISL_514482
 2020-04-07 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D1A17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515222
 2020-04-07 2020-08-18
 Canada hCoV-19/Canada/QC_AN9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12974T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515235
 2020-04-07 2020-08-18
 Canada hCoV-19/Canada/QC_AY6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515348
 2020-04-07 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0068/2020
 ATTA1- C241T C379A C1059T C3037T C14408T C18377T C20740A A22374G A23403G G25563T T28187C

EPI_ISL_515349
 2020-04-07 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0069/2020
 ATT1- C241T C379A C1059T C3037T C14408T A16534G A23403G G25563T

EPI_ISL_515350
 2020-04-07 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0070/2020
 ATTAAAG1- C241T C1059T C3037T C14408T C18647T A23403G G25563T

EPI_ISL_515351
 2020-04-07 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0071/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G C23435T G25563T

EPI_ISL_520732
 2020-04-07 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920647384/2020
 C884T G1397A C5221T G8653T G11083T A19073G G27915T T28688C C28868T C29077T G29742T

EPI_ISL_520733
 2020-04-07 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920647430/2020
 C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_522858
 2020-04-07 2020-08-26
 Italy hCoV-19/Italy/VR-IZSVe-51-5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T G8575A C14408T A23403G GGG28881AAC CTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29784-

EPI_ISL_524429
 2020-04-07 2020-08-28
 United States hCoV-19/USA/NC-200407/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A10248G C10319T C12525T C14408T A23403G G25563T C27964T GAGTACGATCGAGT29745- AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_524495
 2020-04-07 2020-08-28
 United Kingdom hCoV-19/England/CAMB-7E42F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C11379T C14408T A23403G G26196T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524530
 2020-04-07 2020-08-28
 United Kingdom hCoV-19/England/CAMB-7E401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8947T C13335T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524531
 2020-04-07 2020-08-28
 United Kingdom hCoV-19/England/CAMB-7E44D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C6037T C9430T C12528Y C14408T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524649
 2020-04-07 2020-08-28
 United Kingdom hCoV-19/England/LOND-1260CBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10165T C14408T A23403G G24368T G25563T G29773T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524703
 2020-04-07 2020-08-28
 United Kingdom hCoV-19/England/LOND-126028B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T T3359C G11083T C14805T G26144T G26501T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525555
 2020-04-07 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-141PT/2020
 A1GGCACCCGA C241T C3037T G14294A C14408T T16439C A23403G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_525658
 2020-04-07 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-41104-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_528738
 2020-04-07 2020-09-08
 Malaysia hCoV-19/Malaysia/MGI-G873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T G28857T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_530059
 2020-04-07 2020-09-10
 Spain hCoV-19/Spain/MD-LP56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12970T C14408T A20268G A23403G C28333T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530217 MT997739
 2020-04-07 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1621/2020
 ATTAAAGGTTT1- C241T C3037T C12513T C14408T C21575T A23403G C28315T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_534838
 2020-04-07 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3118/2020
 A2480G C2558T G11083T C14805T G26144T A29903-

EPI_ISL_534873
 2020-04-07 2020-09-14
 United Kingdom hCoV-19/England/OXON-B35FE/2020
 C241T C3037T T8672C C14408T A23403G G25429T C26461T A29890R A29893R A29899R AA29902-

EPI_ISL_534876
 2020-04-07 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3664/2020
 C241T C3037T T3067C C14408T A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_534892
 2020-04-07 2020-09-14
 United Kingdom hCoV-19/England/OXON-B389B/2020
 C241T C3037T C14408T A20796G A23403G G24038T GGG28881AAC A29890R A29903-

EPI_ISL_534987
 2020-04-07 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4A2B/2020
 C241T C3037T C14408T A23403G G24038T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_537471
 2020-04-07 2020-09-16
 United States hCoV-19/USA/CA-UCLA-115/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_538371
 2020-04-07 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18877T A23403G G25563T T27922Y CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538372
 2020-04-07 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A16395G A23403G G23593T G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538373
 2020-04-07 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G14118R C14408T A23403G G25563T T27432Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538374
 2020-04-07 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T G3065A C14408T A23403G T24499C G25563T G28368A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538375
 2020-04-07 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18877T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538376
 2020-04-07 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538377
 2020-04-07 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2858/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C14408T A23403G G25563T G28368A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538378
 2020-04-07 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A16395G A23403G G23593T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538379
 2020-04-07 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T T4537C C8047T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_538485
 2020-04-07 2020-09-17
 Singapore hCoV-19/Singapore/951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A C8092T C8139T G11083T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538486
 2020-04-07 2020-09-17
 Singapore hCoV-19/Singapore/952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1102T C1419T C6310A C6312A G11083T C13730T C19524T G21490A C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538487
 2020-04-07 2020-09-17
 Singapore hCoV-19/Singapore/953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538488
 2020-04-07 2020-09-17
 Singapore hCoV-19/Singapore/954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A A8509G G11083T C13730T C19524T G22201T C23929T C26882T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538489
 2020-04-07 2020-09-17
 Singapore hCoV-19/Singapore/955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T G28899T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538490
 2020-04-07 2020-09-17
 Singapore hCoV-19/Singapore/956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538824
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA21F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8371C G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538843
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA31C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538859
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA67D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G2100T A8833G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538902
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA2A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C2416T C3037T C14408T A23403G C25508T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538931
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA1E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8078Y G11230T C14408T G21724T C22326T A23403G G23587C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538978
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA72F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538981
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA6B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T10453C C11195T C14408T A23403G AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538982
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA6D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C12970T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538984
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA6C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T3825C T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538985
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539061
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A91E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2869G C3037T T6226C C14408T A23403G GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539079
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539091
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A90CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17104T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539126
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8FFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C6449T C13862T C14408T A23403G T25202K C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539165
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1778C C3037T C3990T C8389T G10805A C14408T A23403G C23453T G25563T GG28882RS CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539175
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A932C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539180
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A916E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539183
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A92E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539193
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5194K C14408T C21807A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539199
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A92B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C823Y T9167C G11083T C14805T C17156T G26144T C28409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539214
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A924D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539216
 2020-04-07 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A930E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T T22521C A23403G C23731T GGG28881AAC C28905Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541354
 2020-04-07 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2155/2020
 ATTAAAGGTTT1- C241T C1684T C3037T C10039A C14408T G19518T A23403G G25088T GGG28881AAC GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541755
 2020-04-07 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286E12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8822C C14408T A23403G C26895T G27506T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541856
 2020-04-07 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr37/2020
 A1- A2810G C15324T T21644C C29303T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_541857
 2020-04-07 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr40/2020
 A1- A2810G C15324T T21644C C29303T AAAAAAAAAA29894-

EPI_ISL_541858
 2020-04-07 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr43/2020
 A1- A2810G C15324T T21644C C29303T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_542522
 2020-04-07 2020-09-23
 United States hCoV-19/USA/TX-HMH-1075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542612
 2020-04-07 2020-09-23
 United States hCoV-19/USA/TX-HMH-1250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25919T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542757
 2020-04-07 2020-09-23
 United States hCoV-19/USA/TX-HMH-1500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11747T C11962T C14408T A23403G T24982C G25563T C27964T C28093T C28313T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542776
 2020-04-07 2020-09-23
 United States hCoV-19/USA/TX-HMH-1529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6226C G6341T C14408T C18570T G21974T A23403G G25563T G27361T C28687T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544339
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544345
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544353
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544410
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11109T C14408T C16260T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544434
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544796
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544805
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545627
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2388T C3037T C10188T C11572T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545637
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545732
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11074T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545801
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2969G C3037T C14408T C17104T C21742T A23403G C23638T G25563T G26389T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545854
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545890
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545892
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545933
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T G4631A C6310T C14408T A23403G A25315G C25413T G26122A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545934
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T A17858G A24694T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545935
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C9534T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545937
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T C18252T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545942
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545951
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546678
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546728
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G9595A C14408T A23403G G25563T C26625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547140
 2020-04-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9438T C14408T A23403G G25429T G25563T C25919T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547558
 2020-04-07 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G13921T C14408T C21639A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549231 MW040659
 2020-04-07 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1449/2020
 A1- C1457T A8884G G29711T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_559972
 2020-04-07 2020-09-28
 United Kingdom hCoV-19/Scotland/EDB1155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3911G C14408T A23403G C26028T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560568
 2020-04-07 2020-09-29
 France hCoV-19/France/CVL8260/2020
 A1- A4G A26- C28T C241T C3037T C14408T C21233T A23403G A23691G C24621T GGG28881AAC C29743A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_560575
 2020-04-07 2020-09-29
 France hCoV-19/France/CVL8280/2020
 ATTAAAGGTTTATACCTTCCC1- A26- C28T C241T T2242A C3037T C4710T C14408T C21233T A23403G A23691G C24621T GGG28881AAC C29743A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_560579
 2020-04-07 2020-09-29
 France hCoV-19/France/CVL8294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C36T C241T G992A C3037T C14408T C21233T A23403G A23691G C24621T GGG28881AAC C29614T C29743A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_560763
 2020-04-07 2020-09-29
 United States hCoV-19/USA/MN-MDH-1676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1314T C3037T C14408T A23403G G25563T A27821G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_560764
 2020-04-07 2020-09-29
 United States hCoV-19/USA/MN-MDH-1677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T ATG518- C1059T C3037T C10319T C14408T T17126C A23403G G25563T C27964T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_560765
 2020-04-07 2020-09-29
 United States hCoV-19/USA/MN-MDH-1678/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560768
 2020-04-07 2020-09-29
 United States hCoV-19/USA/MN-MDH-1681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T A27821G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_568559
 2020-04-07 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C13694T C14408T A23403G A26190R GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_568560
 2020-04-07 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C14408T A23403G GGG28881AAC G29692K TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_568874
 2020-04-07 2020-10-02
 Malaysia hCoV-19/Malaysia/MGI-G812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A C9165T G11083T A12557G C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_569571
 2020-04-07 2020-10-02
 France hCoV-19/France/IHU-0525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T A1198G C2416T C3037T C6401T C13458T C14408T C20946T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569572
 2020-04-07 2020-10-02
 France hCoV-19/France/IHU-0526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T A2478G C3037T C4095T C4331T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569573
 2020-04-07 2020-10-02
 France hCoV-19/France/IHU-0527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C12924T C14408T A23403G G25563T A26519T GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_569574
 2020-04-07 2020-10-02
 France hCoV-19/France/IHU-0530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T G11083T C14408T C19160T A23403G G25563T G28027T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569575
 2020-04-07 2020-10-02
 France hCoV-19/France/IHU-0531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T C25782T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_569577
 2020-04-07 2020-10-02
 France hCoV-19/France/IHU-0534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T A12334T C14408T C15810T A23403G G25563T G25955A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569582
 2020-04-07 2020-10-02
 France hCoV-19/France/IHU-0540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T T6430C G8371T C14408T A23403G G25563T C26622T T29536C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT477846
 2020-04-07 2020-05-14
 United States SARS-CoV-2/human/USA/AK052/2020
 ATTAAAGGTTTAT1- C241T C3037T C6504T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT477855
 2020-04-07 2020-05-14
 United States SARS-CoV-2/human/USA/AK151/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

MT477856
 2020-04-07 2020-05-14
 United States SARS-CoV-2/human/USA/AK152/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G11083T C14408T C16457T G22201A A23403G G25523T G25563T T27869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT477857
 2020-04-07 2020-05-14
 United States SARS-CoV-2/human/USA/AK153/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25523T G25563T T27869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT477903
 2020-04-07 2020-05-15
 United States SARS-CoV-2/human/USA/UF-10/2020
 ATTAAAGGTTT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C23606T C24138T C25350T A25744G

MT706252
 2020-04-07 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706253
 2020-04-07 2020-07-03
 United States SARS-CoV-2/human/USA/IL-UW-125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706255
 2020-04-07 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T C14408T C18877T A23403G A24862G G25563T A29731T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706256
 2020-04-07 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T G19254T A23403G A23947G G28539T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706269
 2020-04-07 2020-07-03
 United States SARS-CoV-2/human/USA/IL-UW-141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706276
 2020-04-07 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706277
 2020-04-07 2020-07-03
 United States SARS-CoV-2/human/USA/IL-UW-149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A C29269T G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810943
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0228-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T T16993C A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810993
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0373-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C6070T C14408T C19269T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810996
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0379-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G942A C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811011
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0404-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C8782T C17747T A17858G C18060T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811216
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0521-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2647G C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811273
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0616-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- AAGTCATTT686- C1059T G1944A G2808A C3037T C9967T G14055T C14408T A23403G G25563T A26433G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811367
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0783-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1211G C3037T C14408T A23403G G24985T G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811368
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0786-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2647G C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811369
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0787-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T G25660T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811370
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0788-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- AAGTCATTT686- C1059T G1944A G2808A C3037T C9967T C14408T A23403G G25563T A26433G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811371
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0789-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7765A C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811567
 2020-04-07 2020-07-29
 Jordan SARS-CoV-2/human/JOR/SEARCH-0333-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G11083T C14805T G26144T G28842T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811722
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0292-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C2189T C3037T C10319T C13667T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811723
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0293-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A3224G C10319T C14408T C21742T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811726
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0296-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T C28697T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811729
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0299-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C3787T C14408T A23403G G25563T C27964T C28708T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811734
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0304-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C13264T C14408T T15624C A23403G G25563T C25904T C27964T C28099T T28160C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811736
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0306-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- AAGTCATTT686- C1059T C3037T C7765T C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811744
 2020-04-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0323-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T12828C C14408T A23403G A24952G G25563T C27964T C28826T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873057
 2020-04-07 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00198/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873096
 2020-04-07 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00195/2020
 C241T GGTCTT1598- C2416T C3037T C14408T A23403G G25563T G26233T

MT873203
 2020-04-07 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00200/2020
 C241T C2416T C3037T C12439T C14408T A23403G G25563T G26233T

MT873351
 2020-04-07 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00197/2020
 ATTAAA1- C241T C3037T C14408T A23403G T26820C C28603T G28899T

MT873377
 2020-04-07 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00199/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT886409
 2020-04-07 2020-08-14
 United States SARS-CoV-2/human/USA/Yale-105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C12880T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT886410
 2020-04-07 2020-08-14
 United States SARS-CoV-2/human/USA/Yale-106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A810G C1059T C3037T T9070C T10960C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

NMDC60013162
 2020-04-07 2020-06-01
 China hCoV-19/Guangzhou/ID123/2020
 C241T C3037T T12436A C14408T C15324T A23403G A25506T G29868A

EPI_ISL_427148 MT451629
 2020-04-08 2020-04-17
 Australia SARS-CoV-2/human/AUS/VIC898/2020
 C241T C3037T T7438C G9479T C14408T A23403G A26864G C29353T

EPI_ISL_427385
 2020-04-08 2020-04-18
 Belgium hCoV-19/Belgium/ULG-10142/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_427438
 2020-04-08 2020-04-18
 United States hCoV-19/USA/WI-UW-131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427458
 2020-04-08 2020-04-18
 United States hCoV-19/USA/WI-UW-151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_428832
 2020-04-08 2020-04-22
 Singapore hCoV-19/Singapore/53/2020
 ATTAAA1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C26022Y C28311T AAAAAAAAAAAA29892-

EPI_ISL_428833
 2020-04-08 2020-04-22
 Singapore hCoV-19/Singapore/54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C6310A C6312A G11083T C13730T C19524T G22484T C23185T C23929T C24904M A25381R C28311T AAAAAAAAAAAA29892-

EPI_ISL_428834
 2020-04-08 2020-04-22
 Singapore hCoV-19/Singapore/55/2020
 ATTAAAGGTT1- C6310A C6312A G11083T C12651T C13730T C19524T C23929T C26681T C28311T AAAAAAAAAAAA29892-

EPI_ISL_428835
 2020-04-08 2020-04-22
 Singapore hCoV-19/Singapore/56/2020
 ATTAAA1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T G25424T C28311T AAAAAAAAAAAA29892-

EPI_ISL_428836
 2020-04-08 2020-04-22
 Singapore hCoV-19/Singapore/57/2020
 ATTAAAGGTTTATACC1- A1573R C6310A C6312A G11083T C13730T A16740R C19524T C23929T C28311T G29737K AAAAAAAAAAAA29892-

EPI_ISL_428837
 2020-04-08 2020-04-22
 Singapore hCoV-19/Singapore/58/2020
 ATTAAA1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_428838
 2020-04-08 2020-04-22
 Singapore hCoV-19/Singapore/59/2020
 ATTAAA1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C27752Y C28311T AAAAAAAAAAAA29892-

EPI_ISL_428839
 2020-04-08 2020-04-22
 Singapore hCoV-19/Singapore/60/2020
 ATTAAA1- C6310A C6312A G11083T T11901W C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_428841
 2020-04-08 2020-04-22
 Singapore hCoV-19/Singapore/62/2020
 AT1- C6310A C6312A C9733Y G11083T C13730T C14183T C19524T C23929T C27167Y C28311T AAAAAAAAAAAA29892-

EPI_ISL_428842
 2020-04-08 2020-04-22
 Singapore hCoV-19/Singapore/63/2020
 ATTAA1- A68R C3261T C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_428843
 2020-04-08 2020-04-22
 Singapore hCoV-19/Singapore/64/2020
 AT1- C1281T C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_428844
 2020-04-08 2020-04-22
 Singapore hCoV-19/Singapore/65/2020
 ATTA1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T A28998R AAAAAAAAAAAA29892-

EPI_ISL_428845
 2020-04-08 2020-04-22
 Singapore hCoV-19/Singapore/66/2020
 A1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_428992 MT385416
 2020-04-08 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0138/2020
 C241T T833C C1059T C3037T C14408T G15906T C18647T A23403G G25563T C27964T

EPI_ISL_428993 MT385417
 2020-04-08 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0157/2020
 C241T C1059T C3037T C14408T C21811T A23403G G25563T

EPI_ISL_428995 MT385419
 2020-04-08 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0133/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_429003 MT385427
 2020-04-08 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0136/2020
 A1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_429009 MT385433
 2020-04-08 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0122/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_429011 MT385435
 2020-04-08 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0147/2020
 ATT1- C241T C1059T G1685A A2018G C3037T C14408T G17149A A23403G G25563T

EPI_ISL_429014 MT385438
 2020-04-08 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0142/2020
 ATTAAAGGTT1- C241T C1059T G2764T C3037T C14408T A23403G G25563T C27294T

EPI_ISL_429027 MT385451
 2020-04-08 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0137/2020
 A1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_429031 MT385455
 2020-04-08 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0139/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_429043 MT385467
 2020-04-08 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0156/2020
 AT1- C241T AAGTCATTT686- C1059T C3037T G13771T C14408T C19524T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429044 MT385468
 2020-04-08 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0158/2020
 ATTAAAGGTTTAT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429046 MT385470
 2020-04-08 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0125/2020
 ATTAAAGGTTTA1- C8782T C17747T A17858G C18060T C22624Y T28144C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_429047 MT385471
 2020-04-08 2020-04-23
 United States SARS-CoV-2/human/USA/CA-CZB0154/2020
 ATTAAAGGTTT1- G7283A C8782T C12897A C17747T A17858G C18060T C24370T T28144C C29218T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_429643 MT375472
 2020-04-08 2020-04-23
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-5044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C16830T C16859T A23403G G25563T AAAA29900-

EPI_ISL_429843
 2020-04-08 2020-04-24
 United States hCoV-19/USA/WI-GMF-00822/2020
 C241T C1059T C1973T C3037T C14408T A23403G G25563T A25974G

EPI_ISL_430071
 2020-04-08 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4936S/2020
 C241T C3037T C14408T A23403G

EPI_ISL_430072
 2020-04-08 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4937S/2020
 C241T C3037T T3730C C14408T A20268G A23403G

EPI_ISL_430073
 2020-04-08 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4938S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430074
 2020-04-08 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4944S/2020
 C241T C3037T C14408T A20268G A23403G GGG28881AAC

EPI_ISL_430325
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC298/2020
 C241T C1059T C3037T G6358A A6459G C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_430359
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC332/2020
 C241T C3037T T14104C C14408T C18877T A23403G G25563T

EPI_ISL_430362
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC335/2020
 C241T C1059T C1594T C3037T C11916T C11956T C14408T A23403G G25563T

EPI_ISL_430363
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC336/2020
 C241T C1059T C3037T C11866T C14408T A23403G G25563T C27679T

EPI_ISL_430364
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC337/2020
 C241T C1059T C3037T A4884G C14408T A23403G G25563T

EPI_ISL_430365
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC338/2020
 C241T C1059T A2456T C3037T C11916T C14408T C19374T A23403G G25563T

EPI_ISL_430366
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC339/2020
 C241T T1918C C3037T C3157T C14408T C16289T C18877T A23403G G25563T G26849T C27874T

EPI_ISL_430368
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC341/2020
 C241T C1059T C3037T C6558T C14408T A23403G G25563T C29541T

EPI_ISL_430369
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC342/2020
 C241T C1059T C3037T C14408T T23284C A23403G G25563T G26730T

EPI_ISL_430370
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC343/2020
 C241T C1059T C3037T C10456T C11916T C12970T C14408T C18998T A23403G G25563T G25567A G26152T G29540A

EPI_ISL_430371
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NJ-NYUMC344/2020
 C241T C3037T C14408T C21575T A23403G A25505C GGG28881AAC

EPI_ISL_430373
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC346/2020
 C241T C920T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430374
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC347/2020
 C241T C1059T C3037T C14408T C21697A A23403G G25563T

EPI_ISL_430375
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC348/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25681C G29540A

EPI_ISL_430376
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC349/2020
 C241T C3037T C14408T A23403G G25644T GGG28881AAC

EPI_ISL_430377
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC350/2020
 C241T C1059T C3037T C14408T A14747G A20755C A23403G G25563T

EPI_ISL_430380
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC353/2020
 C241T C1059T C3037T C14408T G18803T A23403G G25563T C26625T

EPI_ISL_430383
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC356/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430385
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC358/2020
 C241T C1059T C3037T C6633T C14408T C16733T A23403G G25563T

EPI_ISL_430386
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC359/2020
 C241T A720G C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430387
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC360/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_430389
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC362/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430390
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC363/2020
 C241T T1813A C3037T C14408T C18877T G22205T A23403G G25563T TA29760-

EPI_ISL_430392
 2020-04-08 2020-04-26
 United States hCoV-19/USA/NY-NYUMC365/2020
 C241T C1059T C3037T C6730T C14408T A23403G G25563T

EPI_ISL_430601 MT451762
 2020-04-08 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1135/2020
 C241T T833C C1059T C3037T C13115Y C14408T G16700T A23403G G25563T C27964T

EPI_ISL_430676 MT641731
 2020-04-08 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1281/2020
 C241T C3037T C14408T T22521Y A23403G C27812T GGG28881AAC

EPI_ISL_430911 MT412268
 2020-04-08 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- AC35WT C241T C1059T C3037T G10521T C14408T G16912T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_430912 MT412269
 2020-04-08 2020-04-28
 United States SARS-CoV-2/human/USA/WA-UW-5629/2020
 TTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC2- C241T C1059T C3037T G4975T C14408T A23403G G25523T G25563T T27869C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_432191
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B2BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G7038A C14408T A23403G GGG28881AAC

EPI_ISL_432225
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B254/2020
 A1- G1440A A1688M G2891A C25669T G28851T

EPI_ISL_432228
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B281/2020
 AT1- C3738T C4893Y C9448S G11083T G12188T C14805T T17247C C25714Y G26144T

EPI_ISL_432241
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B306/2020
 C241T C3037T T3100G G10097A C13584T C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_432246
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B1FD/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_432265
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B01E/2020
 ATTAAAGG1- C241T C3037T C14408T C16393T A23403G C26256T C27046T GGG28881AAC

EPI_ISL_432268
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B0D2/2020
 ATTAAAGGTTTA1- C241T C3037T G4508A T5573C C6380T G11801A C14408T C15714Y T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_432271
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B04B/2020
 ATTAAAG1- C241T C3037T C14408T A23403G

EPI_ISL_432273
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B218/2020
 ATTA1- C241T C3037T G5678A G10097A T13216G C14408T C16457T G19999T A23403G C23731T GGG28881AAC

EPI_ISL_432275
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2AE9D/2020
 ATTA1- C241T C1059T C3037T C10376T C14408T G18583T A23403G G24368T G25563T T29418C G29773T

EPI_ISL_432280
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B184/2020
 A1- C241T C3037T C14408T A23403G C25350T

EPI_ISL_432281
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B227/2020
 ATT1- C241T C3037T C14408T C14786T A23403G G26152A GGG28881AAC

EPI_ISL_432283
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B05A/2020
 ATTA1- C241T C3037T T13157C C14408T A20268G A23403G C28854T

EPI_ISL_432286
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B236/2020
 ATTAAAGGTTTATACCTTCCCAG1- G1440A G2891A C17999T C25669T G28851T

EPI_ISL_432291
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B2AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A C16375T C25517T G28851T

EPI_ISL_432295
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2AF9A/2020
 A1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_432296
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B078/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G24368T C24621T G25563T C28893T A28955G C29353T

EPI_ISL_432304
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Wales/PHWC-2B157/2020
 ATTAAAGG1- C241T C3037T C14408T C14741T A23403G T24923C

EPI_ISL_432706
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/NOTT-10FC84/2020
 C241T C3037T G10097A C14408T A23403G C23731T G26746T G28580T GGG28881AAC

EPI_ISL_433395
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1102/2020
 C241T C3037T C14408T C16222T C16289T C18747T A23403G G25429T

EPI_ISL_433396
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1105/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433397
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1106/2020
 C241T C3037T G10097A C14408T A23403G C23731T C25160T G28580T GGG28881AAC

EPI_ISL_433398
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1107/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_433413
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1161/2020
 C241T G362A C3037T G5230T C14408T T14766C A20268G A23403G G27021C C28854T

EPI_ISL_433415
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1164/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_433417
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1167/2020
 C241T C3037T C3156T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_433418
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1168/2020
 C241T C3037T C4423T C14408T A20268G A23403G C24797T G29734C

EPI_ISL_433419
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1169/2020
 C241T C3037T C14408T A20268G A23403G G25483T G29734C

EPI_ISL_433423
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1173/2020
 C6781T C28849T

EPI_ISL_433426
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1182/2020
 C241T C3037T C9532T C14408T C14708T A23403G

EPI_ISL_433428
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1197/2020
 C241T C3037T G10523C T14079C C14408T A23403G GGG28881AAC

EPI_ISL_433430
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1207/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433431
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1216/2020
 C241T C3037T C4551T T5161A C14408T T17126C A20268G A23403G G29742T

EPI_ISL_433432
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1220/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_433660
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1856/2020
 T490A C3177T C8782T T9304C T18736C G19684T C24034T T26729C C26781T C27635T G28077C T28144C A29700G

EPI_ISL_433663
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/Scotland/CVR1935/2020
 C241T C3037T G3689A T11660A C14408T A23403G G25429T A28841G

EPI_ISL_433772
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-787B3/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_433779
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78838/2020
 C241T C3037T C12076T C14408T C19484T C19488T A23403G GGG28881AAC G29701T

EPI_ISL_433791
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-78917/2020
 C241T C3037T C14408T A23403G C28657T GGG28881AAC

EPI_ISL_433826
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7A8BE/2020
 C241T C3037T C9778T C14408T A23403G GGG28881AAC

EPI_ISL_433827
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7A8DC/2020
 C1457T A2480G C2558T C2723T G11083T C14805T A20742G G20925T G26144T

EPI_ISL_433829
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AA30/2020
 A2480G C2558T C5467T T9518C G11083T C14805T G26144T

EPI_ISL_433833
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AA8B/2020
 C241T C3037T A12091G C14408T A23403G GGG28881AAC

EPI_ISL_433843
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AB3D/2020
 C1314T G11083T C11575T C14805T T17247C G26144T T28852C

EPI_ISL_433852
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AC0D/2020
 ATG1605- A3003G A29771G

EPI_ISL_433854
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AC2B/2020
 C241T C3037T C3666T T6715C A13947T C14408T C19484T C19488T C23123T A23403G C27542T GGG28881AAC C29769T

EPI_ISL_433855
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AC3A/2020
 C241T C913T C3037T C14408T A23403G A25801C GGG28881AAC

EPI_ISL_433856
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AC49/2020
 C241T C1684T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC

EPI_ISL_433857
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AC58/2020
 C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC

EPI_ISL_433858
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AC67/2020
 C241T C3037T C14408T C18303T A20268G A23403G C29358A

EPI_ISL_433859
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AC76/2020
 A2480G C2558T C9724T G11083T C11653T C14805T A21137G G21987A G26144T

EPI_ISL_433860
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AC85/2020
 G1440A G2891A G4720T C23533T A27669G

EPI_ISL_433865
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7ACD0/2020
 C241T C3037T T10076C C14408T G22346T A23403G GGG28881AAC

EPI_ISL_433866
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7ACFE/2020
 G160T C241T G2625A C3037T C13862T C14408T T17565C A23403G G26529T C28836T

EPI_ISL_433868
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AD28/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27970T GGG28881AAC

EPI_ISL_433872
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AD64/2020
 C241T C3037T C14408T A23403G A26927G A27562T GGG28881AAC

EPI_ISL_433875
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7ADA0/2020
 C241T C3037T C9778T C14408T A23403G GGG28881AAC

EPI_ISL_433876
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7ADBF/2020
 C241T C1170T C3037T C11379T C14408T A23403G A25937G GGG28881AAC

EPI_ISL_433882
 2020-04-08 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AE34/2020
 C241T C2937T C3037T C14408T A20268G A23403G

EPI_ISL_434505
 2020-04-08 2020-04-29
 Luxembourg hCoV-19/Luxembourg/LNS9470500/2020
 A187G C241T C3037T C14408T A23403G AA29902-

EPI_ISL_434596 MT418885
 2020-04-08 2020-04-30
 United States SARS-CoV-2/human/USA/VA-DCLS-0104/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C25688A C29870A

EPI_ISL_434601 MT418889
 2020-04-08 2020-04-30
 United States SARS-CoV-2/human/USA/VA-DCLS-0109/2020
 ATTAAA1- C241T C1059T C2455T C3037T C11916T C13252T C14408T A23403G C23604T G25563T C29358T

EPI_ISL_434602 MT418890
 2020-04-08 2020-04-30
 United States SARS-CoV-2/human/USA/VA-DCLS-0110/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C5806T C9943T C11916T G13201T C13252T C14408T G20752A A23403G C23604T G25563T C29358T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_434603 MT418891
 2020-04-08 2020-04-30
 United States SARS-CoV-2/human/USA/VA-DCLS-0111/2020
 C241T C1059T C3037T C11916T C13252T C14408T A23403G C23604T G25563T C29358T

EPI_ISL_434604 MT418892
 2020-04-08 2020-04-30
 United States SARS-CoV-2/human/USA/VA-DCLS-0112/2020
 ATTAAAG1- C241T C1059T C3037T C5806T C9943T C11916T C13252T C14408T A23403G C23604T G25563T C29358T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_434609 MT429185
 2020-04-08 2020-04-30
 United States SARS-CoV-2/human/USA/WI-UW-263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T T16047C A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434611 MT429187
 2020-04-08 2020-04-30
 United States SARS-CoV-2/human/USA/WI-UW-265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434613 MT429189
 2020-04-08 2020-04-30
 United States SARS-CoV-2/human/USA/WI-UW-267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_434630
 2020-04-08 2020-04-30
 France hCoV-19/France/OCC-15/2020
 C241T C1427T C3037T G3419A G3871T G7472A C9438T C13517T C14408T C15324T T18688C A23403G GG28881AA

EPI_ISL_434631
 2020-04-08 2020-04-30
 France hCoV-19/France/OCC-16/2020
 C241T C3037T C4672T C14408T C15324T A23403G

EPI_ISL_434666
 2020-04-08 2020-04-30
 Sweden hCoV-19/Sweden/20-07171/2020
 C241T C1170T C3037T G12566T C14408T A23403G GGG28881AAC

EPI_ISL_435147
 2020-04-08 2020-05-03
 Italy hCoV-19/Italy/TE12759/2020
 CC36GA A187G C241T C3037T G4609T A6866W A6869W G11083T C14408T G17331T C17976T A23403G C23533T G27008T C27697Y AAAAAAAAAAAAA29891-

EPI_ISL_435148
 2020-04-08 2020-05-03
 Italy hCoV-19/Italy/TE13491/2020
 C241T C3037T C5986T A6866W A6869W C14408T G18020A A23403G GGG28881AAC G29701T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_435150
 2020-04-08 2020-05-03
 Italy hCoV-19/Italy/TE12774/2020
 A27G AAA29TCT A35T C37T C241T C3037T C5986T C6525Y A6866W A6869W A11439G C14408T A23403G GGG28881AAC G29701T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_435151
 2020-04-08 2020-05-03
 Italy hCoV-19/Italy/TE13484/2020
 A31G C36G C241T C3037T G4955A C5986T A6866W A6869W C14408T G18020A A23403G GGG28881AAC G29701T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_435443
 2020-04-08 2020-05-05
 United States hCoV-19/USA/AK-PHL180/2020
 ATTAAAGGTTTA1- C241T C799T C3037T G14290T C14408T A23403G C26892T C27710Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_435681
 2020-04-08 2020-05-05
 Singapore hCoV-19/Singapore/76/2020
 ATTAAAGGTTTA1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29700-

EPI_ISL_435706
 2020-04-08 2020-05-05
 United States hCoV-19/USA/CT-Yale-109/2020
 C241T C1059T C3037T C14408T A23403G G25563T C28472A

EPI_ISL_436582 MT706396
 2020-04-08 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9195T C14408T T15354C C18877T C21855T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436583 MT706397
 2020-04-08 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T C14937T C20148T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436584 MT706398
 2020-04-08 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A A10070C G28703C C28849T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436585 MT706399
 2020-04-08 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T C14937T C20148T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436586 MT706400
 2020-04-08 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T T8391C C14937T C20148T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436942 MT446342
 2020-04-08 2020-05-07
 United States SARS-CoV-2/human/USA/LA-BIE-074/2020
 C241T C1059T C3037T C10319T C14408T C16694T G21724T A23403G G25563T C27964T

EPI_ISL_437085 MT449676
 2020-04-08 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1085/2020
 ATTA1- A14940G T15922Y AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_437215
 2020-04-08 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0014/2020
 C241T C3037T C8344T C14408T A23403G G25593C

EPI_ISL_437298
 2020-04-08 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG8/2020
 C241T C14408T G15957T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_437367
 2020-04-08 2020-05-08
 United States hCoV-19/USA/MN-MDH-387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C36T A2480G C2558T C10908T G11083T C11902T C14805T G26144T G28851C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_437368
 2020-04-08 2020-05-08
 United States hCoV-19/USA/MN-MDH-390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_437370
 2020-04-08 2020-05-08
 United States hCoV-19/USA/MN-MDH-400/2020
 ATTAAA1- A12G C241T C1059T C3037T C14408T A23403G G25563T G29449T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_437421 MT450907
 2020-04-08 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0206/2020
 AT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_437423 MT450909
 2020-04-08 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0208/2020
 ATTAAA1- C241T C1059T C3037T C10377T C12073T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_437517
 2020-04-08 2020-05-11
 United States hCoV-19/USA/AK-PHL178/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T G11083T C14408T C16457T G22201A A23403G G25523T G25563T T27869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_437521
 2020-04-08 2020-05-11
 United States hCoV-19/USA/OR-OHSU-0012/2020
 G2944A A4236G G11083T C14805T G22468T T25655C G26144T

EPI_ISL_437535
 2020-04-08 2020-05-11
 United States hCoV-19/USA/OR-OHSU-0008/2020
 C241T C3037T C14408T G20980A A22715G A23403G

EPI_ISL_437797 MT482144
 2020-04-08 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0164/2020
 ATTA1- C6027T C7749T A10236G G11083T C14805T T17247C G26144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_437798 MT482145
 2020-04-08 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0165/2020
 ATTAA1- C6027T A10236G G11083T C14805T T17247C G26144T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437799 MT482146
 2020-04-08 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6027T A10236G C11074T G11083T C14805T T17247C C22987A G26144T C29870A

EPI_ISL_439707
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/LIVE-992AC/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_439709
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/LIVE-992CA/2020
 ATG1605- T4949C G11831A C16887T G18651A G28881A

EPI_ISL_439710
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/LIVE-992D9/2020
 C241T C3037T C14408T C16616T A23403G GGG28881AAC

EPI_ISL_439714
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9939A/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_439715
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/LIVE-993B8/2020
 C241T C3037T C14408T G21624T A23403G GGG28881AAC

EPI_ISL_439718
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/LIVE-993E5/2020
 C241T C1059T C1387T C3037T C14408T A23403G G25563T

EPI_ISL_439719
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/LIVE-993F4/2020
 C241T C3037T C14408T C15237T C21077T A23403G GGG28881AAC T29360C

EPI_ISL_439720
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/LIVE-99400/2020
 C241T C3037T C14408T A23403G T26497C GGG28881AAC

EPI_ISL_439721
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9941F/2020
 C241T C3037T C14408T A23403G T26497C GGG28881AAC

EPI_ISL_439722
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9942E/2020
 C241T C3037T C14408T C21998T A23403G C27046T GGG28881AAC

EPI_ISL_439724
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9944C/2020
 C241T C3037T C14408T A23403G G23856A T26497C GGG28881AAC

EPI_ISL_439725
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9945B/2020
 C241T C3037T C3373A C11195T C14408T G21867T A23403G GGG28881AAC C29733T

EPI_ISL_439775
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9993E/2020
 C241T C3037T C14408T C15237T C16329T A23403G AG28877TC GGG28881AAC

EPI_ISL_439777
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9995C/2020
 C241T C3037T C3130T C8139T G11083T C14408T T19668C A23403G G24620T A25575C T25711C

EPI_ISL_441932
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C291E/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_441952
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C3B62/2020
 C241T C3037T C14408T G18803T C21614T A23403G

EPI_ISL_442372
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CAE08/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_442380
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CB1E0/2020
 G4720T G11083A C14805T G26144T

EPI_ISL_442481
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/SHEF-D0EB4/2020
 C241T C3037T G10097A C14408T A23403G C25566T G28580T GGG28881AAC

EPI_ISL_442981
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/CAMB-80A19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12115Y C14408T C19488T C21306T A23403G GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_443047
 2020-04-08 2020-05-12
 United Kingdom hCoV-19/England/CAMB-7F4A6/2020
 ATTA1- C241T G872C C1342T C3037T C8917T C14408T C19170T G19509A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_443212
 2020-04-08 2020-05-12
 Singapore hCoV-19/Singapore/120/2020
 C3261T C6310A C6312A G11083T C13730T G16005K C19524T C23929T A27926G C28311T AAAAAAAAAAAA29892-

EPI_ISL_443213
 2020-04-08 2020-05-12
 Singapore hCoV-19/Singapore/121/2020
 C6310A C6312A G11083T C13730T A13863C C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443244
 2020-04-08 2020-05-12
 Singapore hCoV-19/Singapore/152/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C27494Y C28311T AAAAAAAAAAAA29892-

EPI_ISL_443245
 2020-04-08 2020-05-12
 Singapore hCoV-19/Singapore/153/2020
 C6310A C6312A T8341Y T8573Y T8671Y G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_443246
 2020-04-08 2020-05-12
 Singapore hCoV-19/Singapore/154/2020
 C6310A C6312A T8866W G11083T C13730T C16694T G18891A C19524T T21368C C23929T C28311T G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_444122
 2020-04-08 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4445/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444123
 2020-04-08 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4454/2020
 C241T C3037T C14408T C14821T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_444124
 2020-04-08 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4472/2020
 C241T C2416T C3037T C14408T G20578T A23403G G25563T

EPI_ISL_444126
 2020-04-08 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4490/2020
 C241T C3037T C14408T C19170T G19509A A23403G T23986C G28077T GGG28881AAC

EPI_ISL_444128
 2020-04-08 2020-05-13
 United Kingdom hCoV-19/England/LOND-D44BE/2020
 C241T C2416T C3037T G9856T C14408T C14786T T19700G G20578T A23403G G25563T

EPI_ISL_444130
 2020-04-08 2020-05-13
 United Kingdom hCoV-19/England/LOND-D44DC/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_444133
 2020-04-08 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4560/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_444139
 2020-04-08 2020-05-13
 United Kingdom hCoV-19/England/LOND-D45E8/2020
 C241T C3037T A3235G C14408T A23403G A26530G

EPI_ISL_444141
 2020-04-08 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4603/2020
 C241T C3037T G4285T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_444144
 2020-04-08 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4630/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_444146
 2020-04-08 2020-05-13
 United Kingdom hCoV-19/England/LOND-D46C7/2020
 C241T C3037T G4285T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_445149
 2020-04-08 2020-05-15
 United States hCoV-19/USA/LA-SR0294/2020
 C241T C1059T C3037T C10319T C14408T C19903G A23403G G25563T C27964T

EPI_ISL_445150
 2020-04-08 2020-05-15
 United States hCoV-19/USA/LA-SR0295/2020
 G8A C241T C1059T C3037T C5869T C14408T A23403G G25563T C27964T

EPI_ISL_445152
 2020-04-08 2020-05-15
 United States hCoV-19/USA/LA-SR0297/2020
 C241T C1059T C3037T G3871T C6384T C10188T C14408T G22244C A23403G T24982C G25563T A25864G C27964T

EPI_ISL_445153
 2020-04-08 2020-05-15
 United States hCoV-19/USA/LA-SR0298/2020
 C241T C1059T C3037T C8841T C14408T C20703T A23403G G25563T C27964T

EPI_ISL_445156
 2020-04-08 2020-05-15
 United States hCoV-19/USA/LA-SR0301/2020
 C241T C1059T C3037T C4940T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_445157
 2020-04-08 2020-05-15
 United States hCoV-19/USA/LA-SR0302/2020
 C241T C1059T C2638T C3037T C13502T C14408T A23403G G25563T C27964T

EPI_ISL_445181 MT474137
 2020-04-08 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1133/2020
 ATT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C26895T C27964T

EPI_ISL_445639
 2020-04-08 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A941/2020
 C241T C3037T T3100G G10097A C13584T C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_445649
 2020-04-08 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2A9E7/2020
 C241T C3037T C14408T A19650R A23403G T29264C T29727W

EPI_ISL_446287
 2020-04-08 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-3083C/2020
 ATTA1- C241T C3037T G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_447224 MT506695
 2020-04-08 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20254/2020
 C241T C1059T C3037T C11916T C14408T C18998T A20553G A23403G G25563T C27874T G29540A

EPI_ISL_447895 MT481935
 2020-04-08 2020-05-18
 United States SARS-CoV-2/human/USA/CA-CZB-1144/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C9561T C14408T C17410A A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_448136
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C16362T T24214C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_448138
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1927/2020
 C241T C3037T C14408T C19170T G19509A G20134T A23403G GGG28881AAC

EPI_ISL_448139
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR1953/2020
 ATG1605- C8626T C12710T C28854T

EPI_ISL_448143
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2052/2020
 T514C ATG1605- T4111C C6636T C21575T

EPI_ISL_448774
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEC79/2020
 C241T C3037T A10948G C11653T C14408T C18166T A19098G A23403G C27542T GGG28881AAC

EPI_ISL_448776
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEC97/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC A29879C A29892C

EPI_ISL_448777
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AECB5/2020
 T9W T11K C241T TGGTCATGT508- C3037T A6635M C14408T C18248T T18831C A23403G GGG28881AAC

EPI_ISL_448778
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AECD3/2020
 C241T C3037T C14408T A16448G C18877T A23403G G24197T G25563T C26735T

EPI_ISL_448779
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AECE2/2020
 C241T C3037T T3982C C7164T C14408T A23403G C25587T C27046T C28344A GGG28881AAC

EPI_ISL_448780
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AECF1/2020
 C241T C313T C3037T C14408T A23403G G28086T GGG28881AAC T28894C

EPI_ISL_448781
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AED1C/2020
 C241T C3037T G3719A C13335T C14408T G19072T A23403G GGG28881AAC

EPI_ISL_448785
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEDEF/2020
 C241T C3037T A10948G C11653T C14408T C18166T A19098G A23403G C27542T GGG28881AAC

EPI_ISL_448786
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEDFE/2020
 C241T C3037T C12924T C14408T A16448G C18877T A23403G G24197T G25563T C26735T

EPI_ISL_448787
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEE19/2020
 C241T C3037T C12924T C14408T A16448G C18877T A23403G G24197T G25563T C26735T

EPI_ISL_448788
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEE55/2020
 C241T C3037T G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_448789
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEE64/2020
 G11083T C14805T G26144T G28842T

EPI_ISL_448790
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEE82/2020
 C241T C1912T C3037T C14408T G14580T G18674A A23403G

EPI_ISL_448792
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEEA0/2020
 C241T C3037T C14408T C22858T A23403G GGG28881AAC

EPI_ISL_448793
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEEDD/2020
 C241T C1059T C3037T C6487T C6936T C14408T A23403G G25563T C27673T

EPI_ISL_448794
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEEEC/2020
 C241T C3037T C7043T C11747T T13656C C14408T A23403G C26873T GGG28881AAC

EPI_ISL_448795
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEF07/2020
 C241T C3037T C7043T C11747T T13656C C14408T A23403G C26873T GGG28881AAC

EPI_ISL_448796
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEF34/2020
 A187G C241T C3037T T7048K C14408T A15779G G17122T A23403G

EPI_ISL_448799
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEF8F/2020
 C241T C3037T C14408T T18831C A23403G GGG28881AAC

EPI_ISL_448803
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEFE9/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC

EPI_ISL_448806
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF06D/2020
 C241T C3037T C7164T C14408T A23403G GGG28881AAC

EPI_ISL_448807
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF08B/2020
 C241T C3037T C7164T C14408T A23403G GGG28881AAC

EPI_ISL_448809
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF0A9/2020
 C241T A1630C C3037T C14408T A23403G C27679T GGG28881AAC GAATGGCTG28899-

EPI_ISL_448810
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/OXON-AF0C7/2020
 C241T C3037T C4752T C6723T C14408T A23403G GGG28881AAC

EPI_ISL_448981
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6E15/2020
 AT1- C241T C3037T C14408T A23403G A24232G G25429T

EPI_ISL_448996
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6FC7/2020
 ATTAAAGGTTTATACC1- G4504T A10132W T10135W G11083T C14805T T17247C G26144T C29831T

EPI_ISL_449024
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7324/2020
 A1- C241T GGTCTT1598- C3037T C14408T A23403G C25350T

EPI_ISL_449100
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C5493M C9977A C13694T C14408T G17608T A23403G G25429T

EPI_ISL_449102
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8095/2020
 AT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_449107
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E80E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C12915T C14408T A20268G A23403G

EPI_ISL_449109
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E810B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A10081G C14408T C20405T A23403G GGG28881AAC

EPI_ISL_449111
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8129/2020
 ATTAAAGGTT1- C241T C3037T C14408T C16329T A23403G A24232G G25429T

EPI_ISL_449112
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7765T C9943T C14408T A23403G C25728T G27214T GGG28881AAC

EPI_ISL_449116
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G441A C3037T G12929T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_449117
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8183/2020
 ATTA1- C241T C3037T C14408T C19366T A23403G GGG28881AAC

EPI_ISL_449119
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E81B0/2020
 AT1- C241T C3037T C9977A C13694T C14408T G17608T A23403G G25429T

EPI_ISL_449121
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E81DE/2020
 A1- C241T C3037T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_449124
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8208/2020
 ATTA1- GTTATG515- A2480G C2558T G11083T C14805T C21622T G26144T G29736C

EPI_ISL_449125
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8217/2020
 C241T C3037T C12915T C14408T A20268G A23403G

EPI_ISL_449127
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7732T C14408T C21575T A23403G G25429T G25687K G26458C C28045T

EPI_ISL_449128
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8244/2020
 AT1- A1072G A1515G T7612C C9223T G11083T G12797A C14805T C17069T T17247C A21625G C21855T G26144T

EPI_ISL_449129
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8253/2020
 ATTA1- C241T C3037T C14408T C20148T A23403G CC25162AA GGG28881AAC

EPI_ISL_449130
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- A2480G C2558T C3429T G11083T T12667K C14805T A21137G G26144T C26456T

EPI_ISL_449131
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8271/2020
 ATG1605- A6613G C14931T C18555T C29733T

EPI_ISL_449132
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8280/2020
 C241T C3037T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_449133
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E829F/2020
 ATTAAAGGTT1- C241T C3037T C4002Y C13694T C14408T A23403G G25429T

EPI_ISL_449136
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E82CC/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C14786T A23403G GGG28881AAC

EPI_ISL_449140
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8305/2020
 A1- C241T C3037T C8367T C14408T C19524T A23403G GGG28881AAC

EPI_ISL_449141
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8314/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_449143
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E838D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A19392G A19865G A23403G

EPI_ISL_449145
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E83AB/2020
 ATTAAAGGTTT1- C241T C3037T C13694T C14408T A23403G T24910C G25055T G25429T

EPI_ISL_449146
 2020-04-08 2020-05-19
 United Kingdom hCoV-19/England/NORW-E83C9/2020
 ATTAAAGGTTTATACCT1- G1440A G2891A C7011T T20989Y G25593C G29508C

EPI_ISL_449839 MT641514
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S669/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC C29784T

EPI_ISL_449840 MT641572
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S670/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_449841 MT641522
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S671/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27804T G29553A

EPI_ISL_449842 MT641551
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S672/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_449843 MT641581
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S673/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_449844 MT641552
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S674/2020
 C8782T G15406A C17010T C17747T A17858G C18060T T28144C

EPI_ISL_449845 MT641642
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S675/2020
 C8782T C17010T C17747T A17858G C17934T C18060T T28144C

EPI_ISL_449850 MT641506
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S680/2020
 T283C T3727C C8782T G11083T A16064G C17747T A17858G C18060T T28144C

EPI_ISL_449851 MT641530
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S681/2020
 C241T C3037T C14408T G16813A A23403G GGG28881AAC

EPI_ISL_449856 MT641620
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S686/2020
 C8782T G15406A C17010T C17747T A17858G C18060T T28144C

EPI_ISL_449857 MT641520
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S687/2020
 C241T C1059T C3037T C13554T C14408T A23403G G25563T C27804T G29553A

EPI_ISL_449858 MT641504
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S688/2020
 C241T C609T C1059T C3037T C13554T C14408T A23403G G25563T C27804T G29553A

EPI_ISL_449859 MT641502
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S689/2020
 C241T C1059T C3037T C13554T C14408T A23403G G25563T C27804T G29553A

EPI_ISL_449860 MT641569
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S690/2020
 C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A

EPI_ISL_449861 MT641546
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S691/2020
 C8782T C17010T C17747T A17858G C17934T C18060T G19518T T28144C

EPI_ISL_449862 MT641513
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S692/2020
 C241T C1059T C3037T C13554T C14408T A23403G G25563T C27804T G29553A

EPI_ISL_449863 MT641591
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S693/2020
 C8782T C17010T C17747T A17858G C17934T C18060T T28144C

EPI_ISL_449864 MT641593
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S694/2020
 C8782T G15406A C17010T C17747T A17858G C18060T T28144C

EPI_ISL_449865 MT641509
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S695/2020
 C241T C1059T C3037T C9348T C14408T A23403G G25563T C27804T G29553A

EPI_ISL_449867 MT641519
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S697/2020
 C8782T C17010T C17747T A17858G C17934T C18060T G19518T T28144C

EPI_ISL_449868 MT641590
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S698/2020
 G1401A C8782T T13438C C17747T A17858G C18060T T28118C T28144C

EPI_ISL_449881 MT641539
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S711/2020
 C241T C1059T C3037T C4276T C7093T C14408T A23403G G25563T C28714T G29553A

EPI_ISL_449883 MT641490
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S713/2020
 C1457T A6693G C8266T C8782T C14877T A15204G C17747T A17858G C18060T C20148T T28144C A29188T

EPI_ISL_449885 MT641535
 2020-04-08 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S715/2020
 C241T C1059T C3037T C14408T G14831T A23403G C25046T G25563T G29553A

EPI_ISL_450180
 2020-04-08 2020-05-20
 United States hCoV-19/USA/LA-SR0327/2020
 C241T C1059T C3037T C9246T C10188T C14408T A23403G T24982C G25563T C27964T

EPI_ISL_450187
 2020-04-08 2020-05-20
 Jordan hCoV-19/Jordan/SR-0335/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C27923T

EPI_ISL_450736
 2020-04-08 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C376/2020
 C241T C1059T C3037T C4090T C14408T C22290T A23403G G25563T

EPI_ISL_450806 MT507278
 2020-04-08 2020-05-22
 United States SARS-CoV-2/human/USA/VI-CDC-3943/2020
 C241T C1059T C3037T C14408T G20060T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_451177
 2020-04-08 2020-05-23
 Belgium hCoV-19/Belgium/UGent-66/2020
 C241T C3037T C4321T C8394T C14408T C15277T C15324T A23403G C25904T

EPI_ISL_452038
 2020-04-08 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-168/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T A28119G

EPI_ISL_454264
 2020-04-08 2020-05-28
 Portugal hCoV-19/Portugal/PT0540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1213T C2370T C3037T A6308G C14408T A22671G A23403G A28920C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454267
 2020-04-08 2020-05-28
 Portugal hCoV-19/Portugal/PT0543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2370T C3037T A6308G C14408T A22671G A23403G A28920C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454278
 2020-04-08 2020-05-28
 Portugal hCoV-19/Portugal/PT0555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T A23403G G24077T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454404
 2020-04-08 2020-05-28
 United States hCoV-19/USA/PA-MGEL146/2020
 C241T C1059T C3037T C14408T A21137G A23403G G25563T G27467A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454406
 2020-04-08 2020-05-28
 United States hCoV-19/USA/PA-MGEL148/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454411
 2020-04-08 2020-05-28
 United States hCoV-19/USA/PA-MGEL155/2020
 C241T C1059T C1917T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_455167
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455168
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16993C G20275A T23084C A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455169
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5544T C8782T T9477A C10456T C14805T G14874T G25979T T28144C C28657T C28863T AGTGTAC29756- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455170
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455171
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G C27208T C28854T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455172
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8616T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455173
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- A22110G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455174
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8616T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455175
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7851T C14408T A23403G A24170G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455176
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455177
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455178
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17745T T19839C A23403G C23683T GGG28881AAC G29427C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455263
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T C14408T A16179G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455284
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20031A A23403G C25546T C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455303
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T C25810T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455304
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455305
 2020-04-08 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14184T C14408T A23403G C23731T A28305G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455614 MT536181
 2020-04-08 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455618 MT536185
 2020-04-08 2020-05-29
 United States SARS-CoV-2/human/USA/LA-BIE-064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C2644T C3037T C4795T C10188T C14408T G15260A A23403G T24982C G25563T C27964T C29415T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455711
 2020-04-08 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_4806/2020
 T10A C241T C3037T C14408T G14452T T19839C A23403G GGG28881AAC

EPI_ISL_455780
 2020-04-08 2020-06-01
 India hCoV-19/India/RMRC46/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_456084
 2020-04-08 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19851A C20936T A23403G T27299C GGG28881AAC T29148C C29585T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456085
 2020-04-08 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456086
 2020-04-08 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C186T C241T C3037T C14408T A23403G C27092T T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456087
 2020-04-08 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C C29541T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456375
 2020-04-08 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2094/2020
 G101A C241T C3037T G3729A C6723T C14408T A23403G T26094C

EPI_ISL_456758
 2020-04-08 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR1893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19164T A23403G G25218T G26615T C28005T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456914
 2020-04-08 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB3295/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_457049
 2020-04-08 2020-06-02
 United Kingdom hCoV-19/England/EXET-135335/2020
 C241T C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457066
 2020-04-08 2020-06-02
 United Kingdom hCoV-19/England/EXET-1354AB/2020
 C241T C1185T C3037T C14408T C18029T A23403G GGG28881AAC

EPI_ISL_457074
 2020-04-08 2020-06-02
 United Kingdom hCoV-19/England/EXET-1355C6/2020
 C241T GTTATG515- C3037T C14408T C20594T A23403G C25350T

EPI_ISL_457159
 2020-04-08 2020-06-02
 United Kingdom hCoV-19/England/EXET-135D28/2020
 C241T C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_458072
 2020-04-08 2020-06-03
 India hCoV-19/India/CCMB_J812_P1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C3686T C6312A G11083T C13730T AA21550MW A21792T C23929T C27213T C28311T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_458239
 2020-04-08 2020-06-04
 United States hCoV-19/USA/CA-SR0353/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_458274
 2020-04-08 2020-06-04
 United States hCoV-19/USA/CA-SR0402/2020
 C241T C3037T C14408T A23403G C25517T C27849T GGG28881AAC

EPI_ISL_460123 MT520198
 2020-04-08 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00711/2020
 ATTAAAGGTTTATACCT1- C241T A2104G C3037T C14408T T21656C A23403G G25244C C28603T G28899T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_460246 MT520321
 2020-04-08 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C13730T C14408T A23403G G25429T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460277 MT520352
 2020-04-08 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00716/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C2416T C3037T C14408T T20466C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_460278 MT520353
 2020-04-08 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00715/2020
 ATTAAA1- C241T C2416T C3037T A6672G C14408T A23403G G25563T G26233T

EPI_ISL_460315 MT520390
 2020-04-08 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1594T C3037T C5298T C6384T C8730A C9891T C11109T C14408T A23403G G25563T C27297T C28708T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460323 MT520398
 2020-04-08 2020-05-26
 United States SARS-CoV-2/human/USA/MA_MGH_00721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C14408T C16260T G21604T A23403G G24914T T25036C G25563T C26534T C28821A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460648
 2020-04-08 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G18281A A20755C A23403G G25563T G25784T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460653
 2020-04-08 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4881T T10129C T11638C C14408T A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460654
 2020-04-08 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T G3231A T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460702
 2020-04-08 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460799
 2020-04-08 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14284A C14408T C20148T A23403G C25276T G28077T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460800
 2020-04-08 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T G25595T G28922T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460801
 2020-04-08 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T G2095A C3037T C11109T C11986A C14408T A23403G G25563T G28559T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460929
 2020-04-08 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T C1594T C3037T C9712T C11109T C14408T C16887T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461121
 2020-04-08 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G410T A2775G C3037T G4255T C14408T A20355G A23403G C24621T C26461T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461437 MT683394
 2020-04-08 2020-06-06
 United States SARS-CoV-2/human/USA/UNKNOWN-UW-5620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_462253
 2020-04-08 2020-06-08
 Belgium hCoV-19/Belgium/WCV-0408399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6504T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462266
 2020-04-08 2020-06-08
 Belgium hCoV-19/Belgium/AA-0408412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462267
 2020-04-08 2020-06-08
 Belgium hCoV-19/Belgium/PS-0408413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462268
 2020-04-08 2020-06-08
 Belgium hCoV-19/Belgium/FM-0408414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6507G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462374
 2020-04-08 2020-06-08
 Singapore hCoV-19/Singapore/256/2020
 C6310A C6312A G11083T C13730T C14183T C19524T C23929T T25345Y C27167Y C28311T AAAAAAAAAAAA29892-

EPI_ISL_462395
 2020-04-08 2020-06-08
 Singapore hCoV-19/Singapore/277/2020
 T3256Y C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462398
 2020-04-08 2020-06-08
 Singapore hCoV-19/Singapore/280/2020
 C21T T78K C2470T C3156Y A8450R G11083T C14805T T17247C C20544Y C21789T G26144T AAAAAAAAAAAA29892-

EPI_ISL_463293 MT585098
 2020-04-08 2020-06-10
 United States SARS-CoV-2/human/USA/LA-BIE-045/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_463919
 2020-04-08 2020-06-11
 Canada hCoV-19/Canada/QC_AK5/2020
 C241T C1347T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_464036
 2020-04-08 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0050/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_464075
 2020-04-08 2020-06-11
 Belgium hCoV-19/Belgium/rega-0408281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C835T G1440A G2891A C4202T C4655T G8422A C10002A C22323T G25681T C29546A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464078
 2020-04-08 2020-06-11
 Belgium hCoV-19/Belgium/rega-0408284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1125A C3037T A13947T C14408T T21976C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464080
 2020-04-08 2020-06-11
 Belgium hCoV-19/Belgium/rega-0408286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464086
 2020-04-08 2020-06-11
 Belgium hCoV-19/Belgium/RD-0408292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14980T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464087
 2020-04-08 2020-06-11
 Belgium hCoV-19/Belgium/HC-0408293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G A25223G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464118
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5209G C14408T A23403G A24862G C27923T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_464119
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5209G C14408T A23403G A24862G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_464120
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_09/2020
 C241T A5209G C10834T C14408T C15952T T20891G A23403G AG24389CC A24862G

EPI_ISL_464121
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5209G C11674T C14408T A23403G A24862G G25996C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_464123
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5209G A13991G C14408T A23403G A24862G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_464125
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_14/2020
 C241T T8022G A8026T C14408T C15952T T20891G A23403G AG24389CC A24862G

EPI_ISL_464126
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5209G C14408T A23403G A24862G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_464127
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5209G C14408T A23403G A24862G ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_464128
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5209G C14408T A23403G A24862G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_464129
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5209G T9865G C14408T A23403G A24862G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_464130
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5209G A13991G C14408T A23403G A24862G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_464148
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_37/2020
 C241T G7798T T8022G C14408T T20891G C20897T T20901C A23403G AG24389CC A24862G

EPI_ISL_464149
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_38/2020
 C241T A5209G C14408T T20891G A23403G AG24389CC A24862G

EPI_ISL_464150
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_41/2020
 C241T C6037T T6552G T8022G A14207C C14408T T20891G A23403G AG24389CC GGG28881AAC

EPI_ISL_464151
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_42/2020
 C241T T6552G T8022G T13408C C14408T T20891G A23403G AG24389CC GGG28881AAC

EPI_ISL_464154
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_45/2020
 C241T T6552G G6563C T8022G C14408T T20891G A23403G AG24389CC GGG28881AAC

EPI_ISL_464155
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_46/2020
 ATTAAAGGTT1- C241T C3037T C6555G T6560G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_464156
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_47/2020
 C241T T8022G C14408T T16977C T20891G A23403G AG24389CC GGG28881AAC

EPI_ISL_464157
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_464158
 2020-04-08 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_50/2020
 C241T T6552G T8022G C14408T A24862R

EPI_ISL_465294
 2020-04-08 2020-06-11
 United Kingdom hCoV-19/England/20170042504/2020
 C241T C3037T C14408T C15371Y G18907K A23403G GGG28881AAC

EPI_ISL_466293
 2020-04-08 2020-06-11
 United Kingdom hCoV-19/England/20156004604/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_466298
 2020-04-08 2020-06-11
 United Kingdom hCoV-19/England/20156033304/2020
 C241T C3037T C14408T C18115T A23403G GGG28881AAC

EPI_ISL_466342
 2020-04-08 2020-06-11
 United Kingdom hCoV-19/England/20156052404/2020
 C241T C3037T C14408T A23403G C25350Y G25429T

EPI_ISL_467300
 2020-04-08 2020-06-12
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/04-Sarajevo/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C11747T A11749G C11752G C14408T T15295G C15324T T20346C A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_468077
 2020-04-08 2020-06-16
 Bangladesh hCoV-19/Bangladesh/CHRF_0009/2020
 ATT1- C241T A1163T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_468305
 2020-04-08 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-138/2020
 ATT1- A5C TTT9CAG TAC13- CCAGGT20A C241T C3037T C8208T C14408T A23403G G25088T G27827T GGG28881AAC A29188T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_468307
 2020-04-08 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-140/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T C17474T T22126C A23403G G25088T GGG28881AAC C29769T G29810T G29862A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_468360 MT628097
 2020-04-08 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1887T C2223Y C3037T G4656K C5736Y G8990S C10854M C14408T A17615G C18032Y T20049Y C20089Y G20191R C20199M G21485K C21997M A23403G G25563T C26270T C27836Y AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_468361 MT628098
 2020-04-08 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1343/2020
 G8525A A17482G T21126C C28887T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468539 MT628262
 2020-04-08 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1610/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468706
 2020-04-08 2020-06-17
 United States hCoV-19/USA/LA-BIE-011/2020
 C241T C1059T C2704T C3037T T7562C C9298T C14408T C17421T C19032T T19527C A23403G G25563T C27964T C28099T

EPI_ISL_468707
 2020-04-08 2020-06-17
 United States hCoV-19/USA/LA-BIE-015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468710
 2020-04-08 2020-06-17
 United States hCoV-19/USA/LA-BIE-019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468711
 2020-04-08 2020-06-17
 United States hCoV-19/USA/LA-BIE-020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C3037T C10319T C12374T C14408T G18703T A23403G G25563T A26127G C27964T C28005T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468716
 2020-04-08 2020-06-17
 United States hCoV-19/USA/LA-BIE-027/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_469110
 2020-04-08 2020-06-17
 Singapore hCoV-19/Singapore/355/2020
 G2035T C3583M C6310A C6312A G11083T C13730T C19524T T21942C C23929T G27798T C28311T C28758T AAAAAAAAAAAA29892-

EPI_ISL_469111
 2020-04-08 2020-06-17
 Singapore hCoV-19/Singapore/356/2020
 C6310A C6312A G6463T G11083T C13730T C19118T C19524T C23929T G26763T C26894T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469118
 2020-04-08 2020-06-17
 Singapore hCoV-19/Singapore/363/2020
 C6310A C6312A G11083T T11296C C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_470359
 2020-04-08 2020-06-18
 United Kingdom hCoV-19/England/CAMB-7F44C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2775G C3037T G4255T C13568T C14408T A20355G A23403G A26530G C28720T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470835
 2020-04-08 2020-06-19
 Australia hCoV-19/Australia/WA17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T A9301G A9409G C14408T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470862
 2020-04-08 2020-06-19
 Australia hCoV-19/Australia/WA45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C3695T C14408T C17104T A20268G A23403G C28045T C29200T G29734C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470898
 2020-04-08 2020-06-19
 Russia hCoV-19/Russia/Moscow_PMVL-4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A18585G A23403G GGG28881AAC AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_470902
 2020-04-08 2020-06-19
 Russia hCoV-19/Russia/Moscow_PMVL-9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T C18029T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_471246
 2020-04-08 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471585
 2020-04-08 2020-06-22
 India hCoV-19/India/CCMB_J812_P2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C3686T C6312A G11083T C13730T A21792T C23929T C27213T C28311T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_473048
 2020-04-08 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160D8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C4582Y T5573Y C6380T C9142M G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C AAAAAAAAAAAAA29891-

EPI_ISL_473052
 2020-04-08 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160DCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10376T C14408T G18583T A23403G G24368T G25563T G29773T

EPI_ISL_473850
 2020-04-08 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5733/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_473851
 2020-04-08 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5735/2020
 C241T C3037T T3598C C8917T C14408T C21575T A23403G C24919T GGG28881AAC

EPI_ISL_474318
 2020-04-08 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-2DEC7/2020
 C222T C241T C3037T C14408T C19602Y C21780T A23403G GGG28881AAC

EPI_ISL_475123
 2020-04-08 2020-06-23
 Sweden hCoV-19/Sweden/20-08832/2020
 C241T C1059T C3037T T10288A C14408T A23403G G24368T G25563T

EPI_ISL_475620
 2020-04-08 2020-06-23
 United States hCoV-19/USA/CA-CSMC141/2020
 C241T ATG518- C1059T C3037T A3350C T8396A G10481A C14408T G15908A G16325A C16575T A23403G G25563T

EPI_ISL_475623
 2020-04-08 2020-06-23
 United States hCoV-19/USA/CA-CSMC144/2020
 C241T C1059T A1133T C1670A C2644T C3037T T4389G T9405C G10481A A10720G C11511G A12413C T13575C C22594T A23403G T23652C C25466T G25563T

EPI_ISL_475902
 2020-04-08 2020-06-25
 Austria hCoV-19/Austria/CeMM0540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476071
 2020-04-08 2020-06-25
 Hungary hCoV-19/Hungary/UD-6858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C4752T C14408T A23403G C26326T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476074
 2020-04-08 2020-06-25
 Hungary hCoV-19/Hungary/UD-7373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476075
 2020-04-08 2020-06-25
 Hungary hCoV-19/Hungary/UD-7417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476502
 2020-04-08 2020-06-25
 Canada hCoV-19/Canada/QC_AG3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10747T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476505
 2020-04-08 2020-06-25
 Canada hCoV-19/Canada/QC_AI6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476506
 2020-04-08 2020-06-25
 Canada hCoV-19/Canada/QC_AJ8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477011
 2020-04-08 2020-06-27
 Hungary hCoV-19/Hungary/UD-7360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G G27754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477012
 2020-04-08 2020-06-27
 Hungary hCoV-19/Hungary/UD-7364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3604T C14408T T19839C A23403G G27754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477827
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR1897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1593T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477828
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR1898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A23572G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477833
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR1905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477839
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR1963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G7911T G11083T C14805T G25477T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477841
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR1981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3411T C3885T A5353G C14408T C17104T A20268G T20592C A23403G C28253T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478670 MT675958
 2020-04-08 2020-06-29
 Turkey SARS-CoV-2/human/TUR/KOC-IST-B91/2020
 TTAAAGGTTTATACCTTCCCAGGTAAC2- C241T C3037T C7765T C14408T C17690T C18877T G20464T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_478735
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF407/2020
 A1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_478739
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF443/2020
 C241T C3037T C9430T C14408T C16289T A23403G G25429T C27046T A29874C AAAAAAAAAAAAAAA29889-

EPI_ISL_478743
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF4CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T T1537C C3037T G10097A C14408T A23403G C23731T C24338M G28580T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_478749
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF540/2020
 GTTATG515- ATG1605- A5948G A8182C C9611A C28054T C29739T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_478752
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF58C/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC

EPI_ISL_478758
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF64D/2020
 C241T C3037T C3096T C14408T A23403G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_478763
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF6C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1714T C3037T C14408T A20268G A23403G C28854T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_478764
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF70E/2020
 C241T C3037T C14408T T18831C A23403G GGG28881AAC

EPI_ISL_478772
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF7C2/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAA29900-

EPI_ISL_478780
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF883/2020
 C241T C3037T A6393C G11801A C14408T T18831C C20987T A23403G GGG28881AAC AAAAA29899-

EPI_ISL_478782
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF8CF/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_478784
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF908/2020
 C241T C3037T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_478791
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF9CC/2020
 ATTA1- C241T C3037T T3982C C7164T C14408T A23403G C25587T C27046T C28344A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_478803
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFAC9/2020
 C241T C3037T C14408T T15474C G19735T C20031A A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAA29888-

EPI_ISL_478815
 2020-04-08 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFC4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTG1- T238K C241T C3037T C6723T C14408T G17193T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_479674 MT679208
 2020-04-08 2020-06-29
 United States SARS-CoV-2/human/USA/NYU-VC-022/2020
 ATT1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAA29888-

EPI_ISL_479761
 2020-04-08 2020-07-01
 United States hCoV-19/USA/FL-Miami-04_UMTL-97QX/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C2881A C3037T ATGAATGGACGTACCATATTGGGTAGTGCTTTATTAGAAGATGAATTTACACCTTTTGATGTTGTTAGACAATG10880- TGTTAACTGTTTGGATGACAGATGCATTCTGCATTGTGCAAACTTTAATGTTTTATTCTCTACAGTGTTCCCACCTACAAGTTTTGGACCACTAGTGAGAAAAATATTTGTTGATGGTGTTCCATTTGTAGTTTCAACTGGATACCACTTCAGAGAGCTAGGTGTTGTACATAATCAGGATGTAAACTTAC14334- T18311C A23403G G25563T ATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCTTGTAAAACCTTCTTTTTACGTTTACTCTCGTGTTAAAAATCTGAATTCTTCTAGAGTTCCTGATCTTCTGGTCTAAACGAACTAAATATTATATTAGTTTTTCTGTTTGGAACTTTAATTTTAGCCATGGCAGATTCCAACGGTACTATTACCGTTGAAGAGCTTAAAAAGCTCCTTGAACAATGGAACCTAGTAAT26358- -29844AAAAACACAGTCTGTACCGTCTGCGGT AA29849TT AGC29852TTT C29857T AG29860GA G29864C AT29866GA A29869T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871TTG

EPI_ISL_480210
 2020-04-08 2020-07-01
 Japan hCoV-19/Japan/PG-0560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C9207T C14408T A23403G GGG28881AAC TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_480211
 2020-04-08 2020-07-01
 Japan hCoV-19/Japan/PG-0561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G A23977G GGG28881AAC G29764T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_480212
 2020-04-08 2020-07-01
 Japan hCoV-19/Japan/PG-0563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G G26730A GGG28881AAC TAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29817-

EPI_ISL_480213
 2020-04-08 2020-07-01
 Japan hCoV-19/Japan/PG-0564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C13430T C14408T A23403G GGG28881AAC G29764T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480397 MT772564
 2020-04-08 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3876T C9711T A23932G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480851 MT704018
 2020-04-08 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C14408T A23403G G25471C G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_480852 MT704019
 2020-04-08 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0201/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_481282 MT704136
 2020-04-08 2020-07-02
 United States SARS-CoV-2/human/USA/MD-MDH-0039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T C3037T C9521T C14408T C16260T C19488T A23403G G25563T G26690T C28821A

EPI_ISL_481976
 2020-04-08 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12E223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C17373T A23403G G24368T G25563T G27788T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_482020
 2020-04-08 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12E1EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C14408T A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482041
 2020-04-08 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-103E7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482042
 2020-04-08 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-103F69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482046
 2020-04-08 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-103F87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C7749T C14408T A23403G GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482052
 2020-04-08 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-103E99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482053
 2020-04-08 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-103EC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10594T A11991R C14408T A17342G A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482056
 2020-04-08 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-103EB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7063Y C14408T A23403G G26718K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483160
 2020-04-08 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0469-SAN/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T C27577T

EPI_ISL_483352
 2020-04-08 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0778-IPL/2020
 ATTAAAGGTT1- C241T C3037T C14408T A20268G A23403G T24076C C27630T C28854T

EPI_ISL_483558
 2020-04-08 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A G2246A C9246T C10138T G11083T G22093T A28363C G28380T T28688C C28826T G29402T G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483563
 2020-04-08 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C2937T C3037T G8371T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_483564
 2020-04-08 2020-07-07
 Bahrain hCoV-19/Bahrein/BAH-23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G G24173T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_484523
 2020-04-08 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR1890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484525
 2020-04-08 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR1932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484528
 2020-04-08 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR1941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C835T ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484529
 2020-04-08 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR1945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C21575T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484530
 2020-04-08 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR1947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C15017T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484532
 2020-04-08 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR1950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484534
 2020-04-08 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR1967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6673C C14408T G15438T A20268G C21575T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484544
 2020-04-08 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T6226C C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484789
 2020-04-08 2020-07-08
 United States hCoV-19/USA/MI-UM-2006S001009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G C25516T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487450
 2020-04-08 2020-07-14
 Mali hCoV-19/Mali/M002644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A361G C8782T G12052A A14255G G22468T T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487653
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487700
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G25217T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487718
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3015Y C3787T A7468G C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487727
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4956G C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487807
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C19884Y A23403G G25217T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487819
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C10798A C13862T C14408T A23403G G28436K C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487823
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C18115T A23403G G25217T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487871
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- TTA516- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487882
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487907
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C25624T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487911
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G G24764K C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487924
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C11020T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487928
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487949
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487963
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487996
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488882
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488885
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488928
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488944
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488950
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488978
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G448K C3037T C10798A C13862T C14408T C16833T T19533C A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488987
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489017
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9223T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489044
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T83C C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489049
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C988T G11083T C14805T T17247C G26144T C29077T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489051
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489059
 2020-04-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C6428T C14408T A23403G G24928T G27214T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491119
 2020-04-08 2020-07-16
 Czech Republic hCoV-19/Czech Republic/NRL_5815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T T444C C3037T A12820G C14408T C19186T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491147
 2020-04-08 2020-07-16
 Oman hCoV-19/Oman/12096/2020
 ATTAAAGGTTTATACCTTCC1- G24A C241T C3037T C4246T G10265A C14408T C16293T G19645T A23403G T23482C GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_491530
 2020-04-08 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G G29554T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491544
 2020-04-08 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491582
 2020-04-08 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T C9598T C10582T C14408T G22309A G22894A A23403G G25563T C26461T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491929 MT776424
 2020-04-08 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_3089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T G2441A C3037T C14408T T16456C A23403G G24348T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491930 MT776425
 2020-04-08 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_3090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T G2441A C3037T C14408T T16456C A23403G G24348T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492290
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-185362F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25523T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492517
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FD03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22624Y A23403G GGG28881RRS CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492548
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FCF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492671
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FCE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T C19862T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492764
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123D0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492766
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-124050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2000G C3037T C14408T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492772
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-124023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C14408T G16852K A19837G A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492774
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-124463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492778
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-124454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492782
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123F36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492790
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12406F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1426T A2480G C2558T G11083T G14710T C14805T G16852T C19160T G26144T C28909T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492794
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12421E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C475T C3037T C3787T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492795
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-124032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492796
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123F09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C9118T C14408T C15738Y A23403G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492798
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-124560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5629A C6762Y C14408T T19839C A23403G G25552T C25714T G27204T C27610Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492800
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-124014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492803
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1242B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3582A G7798T C14408T A20268G A23403G A28765G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492806
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-124445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T433C C541T C1059T A1951G C3037T C9165T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492807
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123F72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492810
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123F45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C703T C829T C6145T A8232G T9519C G11083T C14805T G17122T T17247C G26144T C26461T C26527T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492815
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12414E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492816
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123FFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C6651T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492817
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1240AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C14408T A19166G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492822
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123F63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8074T C14408T G15766T C20133T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492823
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123FDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C988T C3037T C7600T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492827
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123F54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C703T C829T T9519C G11083T C14805T T17247C G26144T C26461T C26527T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492828
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123F27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T G26144T C26542T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492830
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123DC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T C6286T C14408T C16289T A22320R T22861C A23403G G24197K G25429T G29395T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492832
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-123E75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7162T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492835
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/BRIS-124111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C12025T C14408T A23403G C25528T A27738C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492845
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C59B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C4900T C14408T G17331T A23403G C28311T GGG28881AAC G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492868
 2020-04-08 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C5C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C4900T C14408T G17331T A23403G C28311T GGG28881AAC G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494380
 2020-04-08 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1129/2020
 C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494390
 2020-04-08 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1145/2020
 C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494391
 2020-04-08 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A23403G C25350T C25566T

EPI_ISL_494413
 2020-04-08 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C4540T G4904T G5206T C5784T C14408T A23403G C24138T C25350T

EPI_ISL_495300 MT791937
 2020-04-08 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0627/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T C14925T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_495604
 2020-04-08 2020-07-23
 United States hCoV-19/USA/MN-MDH-1305/2020
 ATTAAAGGTTTATACC1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_500477
 2020-04-08 2020-07-28
 Brazil hCoV-19/Brazil/PE-IAM30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10626T C14408T A23403G TATGT24761ACACA GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_500484
 2020-04-08 2020-07-28
 Brazil hCoV-19/Brazil/PE-IAM84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C21638T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_500702
 2020-04-08 2020-07-29
 Australia hCoV-19/Australia/NSW2283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10435C C10851T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500872
 2020-04-08 2020-07-30
 Brazil hCoV-19/Brazil/PE-IAM29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T22129C A23403G A24762C GT24764CA GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_506994
 2020-04-08 2020-08-02
 South Korea hCoV-19/Korea/KCDC2200/2020
 TAAAGGTTTATACCTTCCCAG3- C241T C3037T C14408T A23403G GGG28881AAC G29861T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869C

EPI_ISL_507028 MT820486
 2020-04-08 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC64/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_507083
 2020-04-08 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_508917
 2020-04-08 2020-08-04
 France hCoV-19/France/ARA2221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTG1- C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508995
 2020-04-08 2020-08-04
 France hCoV-19/France/ARA21941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T C3037T C5481T C14408T C15324T A23403G C25433T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508996
 2020-04-08 2020-08-04
 France hCoV-19/France/ARA22088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C2416T C3037T G8371T C14408T G16405A C19017T C19983T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508997
 2020-04-08 2020-08-04
 France hCoV-19/France/ARA22132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509450 MT827212
 2020-04-08 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0046/2020
 ATTA1- C241T C1059T C3037T C14408T A15483G C18526T T22219C A23403G G25563T C29025T G29690T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_510404
 2020-04-08 2020-08-06
 Spain hCoV-19/Spain/COV004288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A21556G A23403G GGG28881AAC C29719A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_510405
 2020-04-08 2020-08-06
 Spain hCoV-19/Spain/COV004289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A21556G A23403G GGG28881AAC C29719A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_510406
 2020-04-08 2020-08-06
 Spain hCoV-19/Spain/COV004290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T G4720T C14408T A21556G A23403G GGG28881AAC C29719A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510407
 2020-04-08 2020-08-06
 Spain hCoV-19/Spain/COV004291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C6091T A6357G C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_511029
 2020-04-08 2020-08-07
 Portugal hCoV-19/Portugal/PT0770a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2370T C3037T A6308G C14408T A22671G C22680T A23403G A28920C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511692
 2020-04-08 2020-08-08
 Portugal hCoV-19/Portugal/PT1145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2370T C3037T A6308G C14408T A22671G A23403G G28378T A28920C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511696
 2020-04-08 2020-08-08
 Portugal hCoV-19/Portugal/PT1149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2370T C3037T A6308G C14408T A22671G A23403G A27690T A28920C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512818 MT872495
 2020-04-08 2020-08-11
 Sierra Leone SARS-CoV-2/human/SLE/KGH-G-8627/2020
 ATTAA1- C241T C3037T A11782G C14408T A23403G C26801G A29903-

EPI_ISL_512826
 2020-04-08 2020-08-12
 Singapore hCoV-19/Singapore/790/2020
 ATTAAAGGTTT1- C6310A C6312A G6463T G11083T C13730T C19524T C23929T G26763T C26894T C28311T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_512935
 2020-04-08 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH492/2020
 C241T C3037T C14408T C16915T C18877T A23403G T24202C G25563T C26735T

EPI_ISL_512936
 2020-04-08 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH493/2020
 C241T C3037T C14408T C18877T A23403G C26735T

EPI_ISL_512937
 2020-04-08 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH494/2020
 C241T C3037T C14408T C16391A C18877T A23403G G25563T C26735T GGG28881AAC

EPI_ISL_513513
 2020-04-08 2020-08-13
 Brazil hCoV19/Brazil/RJ-INCA-C06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C5673T C14408T A23403G C26198T T27299C GGG28881AAC T29148C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_513514
 2020-04-08 2020-08-13
 Brazil hCoV19/Brazil/RJ-INCA-C07/2020
 ATTAAAG1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_514265
 2020-04-08 2020-08-16
 Peru hCoV-19/Peru/INS-044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29179T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_515220
 2020-04-08 2020-08-18
 Canada hCoV-19/Canada/QC_AN6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C28606T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515352
 2020-04-08 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0073/2020
 ATTAAA1- C241T C379A C1059T C3037T C6011T CC14407TT A23403G G25563T

EPI_ISL_520680
 2020-04-08 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3280050877/2020
 C884T G1397A G8653T G11083T C16049T C17999T A19073G G27915T T28688C C28868T C29077T G29742T

EPI_ISL_522860
 2020-04-08 2020-08-26
 Italy hCoV-19/Italy/VR-IZSVe-54-17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T C18747T A23403G GGG28881AAC CTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29784-

EPI_ISL_522861
 2020-04-08 2020-08-26
 Italy hCoV-19/Italy/VR-IZSVe-55-111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C683T C3037T A13947T C14408T C17678T T21543C A23403G C27920T GGG28881AAC AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_522862
 2020-04-08 2020-08-26
 Italy hCoV-19/Italy/VR-IZSVe-55-16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A23403G G24977T C28708T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_522863
 2020-04-08 2020-08-26
 Italy hCoV-19/Italy/VR-IZSVe-55-18/2020
 ATT1- C241T C3037T C14408T A23403G G24977T C28708T GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_522864
 2020-04-08 2020-08-26
 Italy hCoV-19/Italy/VR-IZSVe-55-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T A23403G G24977T C28708T GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_522865
 2020-04-08 2020-08-26
 Italy hCoV-19/Italy/VR-IZSVe-60-40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C203T C241T C1263T C3037T C14408T A23403G G28625C GGG28881AAC GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_524428
 2020-04-08 2020-08-28
 United States hCoV-19/USA/NC-200428/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C10319T C11020T C11379T C12525T C14408T A23403G G25563T C27964T GAGTACGATCGAGT29745- AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_524431
 2020-04-08 2020-08-28
 United States hCoV-19/USA/NC-200265/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C5512T C10319T C12525T C14408T A23403G G25563T C27964T GAGTACGATCGAGT29745- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_524501
 2020-04-08 2020-08-28
 United Kingdom hCoV-19/England/CAMB-7E498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6926T C14408T T15336C C19170T G19509A A23403G T25272C C27145T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525660
 2020-04-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-41904-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C1059T C3037T G13558A C14408T A19440T T21357C A23403G G25563T C29518T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525661
 2020-04-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-42337-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G C25626T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525662
 2020-04-08 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-42340-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A6616G C14408T A23403G G25563T C26801T CACCGAGGCCACGCG29730- TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527402
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-C0363-1/2020
 C241T C1059T C3037T C14408T C19983T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527404
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-C0768/2020
 C241T C1059T C3037T C14408T C19983T A23403G G25563T C29738Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527405
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-C0881-1/2020
 C241T C1059T C3037T A4446M C14408T C19983T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527409
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-C2673-2/2020
 C241T C1059T C3037T TGTC4435YKKY C14408T AGC19941WRS A19945M GA19947RR C19951M A19953M CTGA19955MYKR CGAT19961MSRW GTGCAC19967KKKSMM ACTCACTGTC19974MMYYMMYKKT A23403G G25563T A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527411
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-C2980-2/2020
 C241T C1059T C3037T C14408T C17172T A17429G A23403G G25563T C28849T C29160T C29370T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527414
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D0290/2020
 C241T C1059T C3037T G8602A C14408T A20437G A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527415
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D0376/2020
 C241T C1059T C2623T C3037T G8602A C14408T A20318R A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527417
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D0459-2/2020
 C241T C1059T C3037T C14408T A20161R A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527421
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D0769-1/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527428
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1057-1/2020
 C241T C1059T C3037T G8602A C14408T T22402Y A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527434
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1075-1/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527437
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1085-2/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527439
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1490-1/2020
 C241T C1059T A2725W C3037T G8602A A13852G C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527443
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1657-2/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527445
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1665/2020
 C241T C1059T C3037T C14408T A15082G A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527447
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1694/2020
 C241T C1059T C3037T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527452
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1882-2/2020
 C241T C1059T C3037T C3787T G8602A C14408T CT20195MY ACT20198WMY ACTCA20203WMYYM A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527455
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1990-2/2020
 C241T C1059T C3037T G8602A C14408T G19292K ACACA19319MMMMM AG19326MR TGAT19332KRWW A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527457
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2099/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T A29752G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527460
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2282-2/2020
 C241T C1059T C3037T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527466
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2399-2/2020
 C241T C1059T C3037T G8602A A8651W C14120T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527469
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2591-2/2020
 C241T C1059T C3037T G8602A C14408T G20068T T20484W TT21994YY C21998M C22000M A22003M C22009M A22011R A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527473
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2678/2020
 C241T C3037T C14408T C15981T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527475
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-D3084-1/2020
 C241T C1059T C3037T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527483
 2020-04-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-E0983-1/2020
 C241T C1059T A2642G C3037T C14408T G19414T G20616T A23403G A24129G G25552T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_530060
 2020-04-08 2020-09-10
 Spain hCoV-19/Spain/MD-LP57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12970T C14408T A20268G A23403G C28333T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530218 MT997740
 2020-04-08 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1622/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G C23410T G25563T C26873T C27741T G29540A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_530233
 2020-04-08 2020-09-11
 Australia hCoV-19/Australia/QLD969/2020/P1
 ATTAAAGGT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_534783
 2020-04-08 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- A2480G C2558T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_534799
 2020-04-08 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2BC0/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC

EPI_ISL_534812
 2020-04-08 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2D42/2020
 ATTAAA1- C241T C3037T C14408T T18831C A23403G G26167T GGG28881AAC CGATCGAGTG29750- AA29899MM

EPI_ISL_534989
 2020-04-08 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4A67/2020
 C241T C3037T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_537476
 2020-04-08 2020-09-16
 United States hCoV-19/USA/CA-UCLA-125/2020
 ATTAAAGGTTTA1- C241T C379A C1059T C3037T A14041G C14408T A23403G G25563T C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_537500
 2020-04-08 2020-09-16
 United States hCoV-19/USA/CA-UCLA-160/2020
 ATTAAAGGTTTA1- C241T C379A C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_537501
 2020-04-08 2020-09-16
 United States hCoV-19/USA/CA-UCLA-162/2020
 ATTAAAGGTTTAT1- C241T C379A C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_537502
 2020-04-08 2020-09-16
 United States hCoV-19/USA/CA-UCLA-163/2020
 ATTAAAGGTTT1- C241T C379A C1059T C3037T T5527G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_537503
 2020-04-08 2020-09-16
 United States hCoV-19/USA/CA-UCLA-164/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_537504
 2020-04-08 2020-09-16
 United States hCoV-19/USA/CA-UCLA-165/2020
 ATTAAAGGTTTATA1- T221C C241T C379A C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_538380
 2020-04-08 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C11124T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538491
 2020-04-08 2020-09-17
 Singapore hCoV-19/Singapore/957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11071T G11083T C12459T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538492
 2020-04-08 2020-09-17
 Singapore hCoV-19/Singapore/958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A C7772T G11083T C13730T C19524T C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538748
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A975D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C14408T C15324T C15763T A23403G G28881T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538753
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A967E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C6449T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538755
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A981E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12846T C14408T A23403G C27046T GGG28881AAC C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538756
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4232T C4795T A10505G C10507T C12623T T13678C C14408T A23403G C27046T GGG28881AAC A28910C C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538776
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4893T C6312A A10948G C14408T A23403G A23902C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538806
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9A90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19645T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538829
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538845
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T A8182G G11083T C14805T G25909A G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538854
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA0BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538865
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA0D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A A14355G C14408T A23403G C23731T C25413T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538870
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1213T C3037T C9565T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538889
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA09D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T G21724T C22326T A23403G G23587C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538892
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA4A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G C20669T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538896
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA0AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A27578T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538908
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C5956Y C6449T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538909
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A98B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C6449T C13862T C14408T A23403G G28302T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538921
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA07F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C300Y C3037T G3871K C8683T C14408T C18657T A20268G G22992T A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538922
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9B15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5869T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538943
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9FEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12459T C14408T A23403G T27251C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538949
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457Y C2416Y C3037T C14408T A23403G G25471T C28849Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538967
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G10167K C14408T T22521C A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538969
 2020-04-08 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T C18657T A20268G G22992T A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539281
 2020-04-08 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A20268G A23403G G29027T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539282
 2020-04-08 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C12068T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_539283
 2020-04-08 2020-09-17
 Spain hCoV-19/Spain/VC-IBV-98003492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539778
 2020-04-08 2020-09-19
 Czech Republic hCoV-19/Czech Republic/NRL-5886-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539779
 2020-04-08 2020-09-19
 Czech Republic hCoV-19/Czech Republic/NRL-5886-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C11195T C14408T A23403G T27244C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541752
 2020-04-08 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286D60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541859
 2020-04-08 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr45/2020
 A1- A2810G C15324T T21644C C29303T AAAAAAAAAAAAAA29890-

EPI_ISL_541860
 2020-04-08 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr46/2020
 A1- A2810G C15324T T21644C C29303T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_541861
 2020-04-08 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr49/2020
 A1- A2810G C15324T T21644C G25785C C29303T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_541862
 2020-04-08 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr50/2020
 A1- A2810G C15324T T21644C C29303T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_541863
 2020-04-08 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr51/2020
 A1- A2810G C15324T T21644C C29303T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_541864
 2020-04-08 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr52/2020
 ATTAAA1- A2810G C15324T T21644C C29303T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_541865
 2020-04-08 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr54/2020
 ATTAAAGGTTTA1- A2810G C15324T T21644C C29303T TAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29826-

EPI_ISL_542494
 2020-04-08 2020-09-23
 United States hCoV-19/USA/TX-HMH-1013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544833
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G18055A G19525T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_544868
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26464T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544916
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545601
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545610
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T997C C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545653
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545668
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545780
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545788
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3754T C5310T C14408T G15760A C17934T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545844
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C20320T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545852
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545856
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545875
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6032A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545887
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545888
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T C313T C3037T C8290T C14408T C16729T C21575T A23403G G26207T G26314A GGG28881AAC T29665G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546565
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546575
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546593
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546786
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1926T C3037T G5008A C14408T A23403G G25563T G27047T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547132
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A18082G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547165
 2020-04-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G C24621T T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547519
 2020-04-08 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5007T C7923T C14408T G21974T A23403G G27762T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548248
 2020-04-08 2020-09-25
 Sweden hCoV-19/Sweden/20-08830/2020
 C241T C3037T C14408T A23403G TGGAAC25422- GGG28881AAC

EPI_ISL_548352
 2020-04-08 2020-09-26
 United States hCoV-19/USA/CA-CZB-3647/2020
 C241T C1059T C3037T C6312Y A9161R C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_549023
 2020-04-08 2020-09-28
 Netherlands hCoV-19/env/Netherlands/ZH-93825-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2527T C4655T T10561C C18484T A23403G ATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29478-

EPI_ISL_549236 MW040664
 2020-04-08 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1454/2020
 ATTA1- C241T C2416T C3037T T12112C C14408T G21974C A23403G G25563T G26233T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_549238 MW040666
 2020-04-08 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1456/2020
 ATTAAAGGTTT1- C241T C1059T C2973T C3037T C14408T C17326T A23403G G25563T G25650T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_549239 MW040667
 2020-04-08 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1457/2020
 ATTA1- C241T C1059T C2973T C3037T C14408T C17326T A23403G G25563T G25650T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_549240 MW040668
 2020-04-08 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1458/2020
 ATTAAAGGTTTATACCT1- C241T C2416T C3037T C12513T C14408T A16797G A23403G G23873T G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_560629
 2020-04-08 2020-09-29
 France hCoV-19/France/GE8799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G15444T G16065T C16694T G19398T C19763T A23403G G28690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560766
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1679/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560769
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T G17252A A17892G A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560770
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C6840T C14408T G17252A A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_560771
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_560772
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T A11782G C14408T A23403G G25563T G25855T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560773
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C575T C1059T C3037T A5309G C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560774
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_560775
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1688/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C1314T C3037T C14408T A23403G G25563T A27821G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_560776
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_560777
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C5850T C10908T G11083T C14805T G22487S G26144T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_560779
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560780
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1693/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_560781
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T997C C1059T C3037T C5878T G10870T C14408T A23403G G25563T A25859G C29149T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_560782
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560783
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1696/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T A27821G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_560784
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T A27821G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_560785
 2020-04-08 2020-09-29
 United States hCoV-19/USA/MN-MDH-1698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C22523S A23403G G25563T A27821G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_565983
 2020-04-08 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C2710Y C3037T C14408T A18487T A21405T C23277T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_565985
 2020-04-08 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5700Y C14408T A23403G G25563T C25976A C29482T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_569587
 2020-04-08 2020-10-02
 France hCoV-19/France/IHU-0549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C1917T C3037T C14408T G19891T A23403G G25563T C29353T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569588
 2020-04-08 2020-10-02
 France hCoV-19/France/IHU-0550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A20294G A23403G T25123C G25563T G29779C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569589
 2020-04-08 2020-10-02
 France hCoV-19/France/IHU-0551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C958T C2416T C3037T G8371T A10691G C14408T C16289T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569590
 2020-04-08 2020-10-02
 France hCoV-19/France/IHU-0553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569592
 2020-04-08 2020-10-02
 France hCoV-19/France/IHU-0555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C4039T C6794T G8371T C14408T A23403G C24378T G25563T G29706T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569593
 2020-04-08 2020-10-02
 France hCoV-19/France/IHU-0558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2189T C3037T G4105T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569594
 2020-04-08 2020-10-02
 France hCoV-19/France/IHU-0559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T G28812T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569595
 2020-04-08 2020-10-02
 France hCoV-19/France/IHU-0560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C835T C2416T C3037T G8371T C14408T A23403G C24896T G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT477858
 2020-04-08 2020-05-14
 United States SARS-CoV-2/human/USA/AK178/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T G11083T C14408T C16457T G22201A A23403G G25523T G25563T T27869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT477859
 2020-04-08 2020-05-14
 United States SARS-CoV-2/human/USA/AK180/2020
 ATTAAAGGTTTA1- C241T C799T C3037T G14290T C14408T A23403G C26892T C27710Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT706259
 2020-04-08 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706279
 2020-04-08 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810607
 2020-04-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1129-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810617
 2020-04-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1145-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810618
 2020-04-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1146-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25350T C25566T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810640
 2020-04-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1172-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T C5784T C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810977
 2020-04-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0353-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811010
 2020-04-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0402-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C25517T C27849T GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811364
 2020-04-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0778-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C27630T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811568
 2020-04-08 2020-07-29
 Jordan SARS-CoV-2/human/JOR/SEARCH-0335-JOR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T C26735T C27923T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811724
 2020-04-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0294-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T C19903G A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811725
 2020-04-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0295-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C5869T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811727
 2020-04-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0297-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G3871T C6384T C10188T C14408T G22244C A23403G T24982C G25563T A25864G C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811728
 2020-04-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0298-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C8841T C14408T C20703T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811731
 2020-04-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0301-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C4940T C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811732
 2020-04-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0302-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C2638T C3037T C13502T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811747
 2020-04-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0327-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C9246T C10188T C14408T A23403G T24982C G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT845878
 2020-04-08 2020-08-06
 Germany SARS-CoV-2/human/DEU/SC2_REGS25578139L/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C13329T C14408T C18788T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860C

MT873109
 2020-04-08 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00728/2020
 ATTAAA1- C241T G1268A C2416T C3037T G13126T C14408T A23403G G25135T G25563T T29452C

MT873176
 2020-04-08 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00727/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T C29171T

MT873416
 2020-04-08 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00202/2020
 C241T C1059T C3037T C11916T A12103G C14408T C18998T A23403G G25563T G29540A

MT873459
 2020-04-08 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00903/2020
 ATTAAA1- C241T C1059T C1403T C3037T C11916T C14408T A23403G G25563T G28376T

MT886413
 2020-04-08 2020-08-14
 United States SARS-CoV-2/human/USA/Yale-109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C28472A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW001233
 2020-04-08 2020-09-14
 United States SARS-CoV-2/human/USA/203-ETA/2020
 C241T C1059T C1403T C3037T C14408T G18255T G21986A A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW001234
 2020-04-08 2020-09-14
 United States SARS-CoV-2/human/USA/209-ETA/2020
 C241T C1059T C3037T T3312C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW001235
 2020-04-08 2020-09-14
 United States SARS-CoV-2/human/USA/210-ETA/2020
 C241T C1059T C3037T C14408T G18255T G20580T G21986A A23403G G25563T C28866T AAAAAAAAAAAAAAAAAAAAA29883-

MW001238
 2020-04-08 2020-09-14
 United States SARS-CoV-2/human/USA/211-NP-TCE/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G24197T G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

MW004168
 2020-04-08 2020-09-15
 United States SARS-CoV-2/human/USA/MO-MU-1087/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T -29704A

NMDC60013146
 2020-04-08 2020-06-01
 China hCoV-19/Guangzhou/ID150/2020
 T2C C241T C3037T C14408T C15324T C19524T A23403G G29868A

NMDC60013150
 2020-04-08 2020-06-01
 China hCoV-19/Guangzhou/ID151/2020
 C241T C3037T C14408T C15324T C19524T A23403G

NMDC60013154
 2020-04-08 2020-06-01
 China hCoV-19/Guangzhou/ID149/2020
 C241T C3037T C14408T C15324T C19524T A23403G

NMDC60013170
 2020-04-08 2020-06-01
 China hCoV-19/Guangzhou/ID125/2020
 C241T C3037T C14408T C15324T A23403G G29868C

NMDC60013171
 2020-04-08 2020-06-01
 China hCoV-19/Guangzhou/ID126/2020
 A4T C241T C3037T C14408T C15324T A23403G G29868A

NMDC60013219
 2020-04-08 2020-06-01
 China hCoV-19/Guangzhou/ID148/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T C14408T A23403G G25563T G29868A

EPI_ISL_427442
 2020-04-09 2020-04-18
 United States hCoV-19/USA/WI-UW-135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G25981A G28539T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427443
 2020-04-09 2020-04-18
 United States hCoV-19/USA/WI-UW-136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2288A C3037T C14408T A23403G G28001T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836T

EPI_ISL_427444
 2020-04-09 2020-04-18
 United States hCoV-19/USA/WI-UW-137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427447
 2020-04-09 2020-04-18
 United States hCoV-19/USA/WI-UW-140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6031T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427460
 2020-04-09 2020-04-18
 United States hCoV-19/USA/WI-UW-153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_429730
 2020-04-09 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS7438855/2020
 A187G C241T C3037T C14408T G17014T A23403G C27727T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_429764
 2020-04-09 2020-04-24
 Luxembourg hCoV-19/Luxembourg/LNS1703112/2020
 C241T C1059T C3037T C4320T C14408T A23403G C25413T G25563T C25688T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_430075
 2020-04-09 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4949S/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_430084
 2020-04-09 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5017V/2020
 C241T C3037T C14408T A23403G G27415T GGG28881AAC

EPI_ISL_430088
 2020-04-09 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5169S/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_430089
 2020-04-09 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5170S/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_430382
 2020-04-09 2020-04-26
 United States hCoV-19/USA/NY-NYUMC355/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G C23422A G25563T G29540A

EPI_ISL_430384
 2020-04-09 2020-04-26
 United States hCoV-19/USA/NY-NYUMC357/2020
 C241T T1813A C3037T C14408T C18877T G22205T A23403G G25563T TA29760-

EPI_ISL_430388
 2020-04-09 2020-04-26
 United States hCoV-19/USA/NY-NYUMC361/2020
 C241T C1059T A2542G C3037T C12068T C14408T G15448A A23403G G25563T

EPI_ISL_430391
 2020-04-09 2020-04-26
 United States hCoV-19/USA/NY-NYUMC364/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430393
 2020-04-09 2020-04-26
 United States hCoV-19/USA/NY-NYUMC366/2020
 C241T C1059T C3037T C14408T C15688T A23403G G25563T

EPI_ISL_430394
 2020-04-09 2020-04-26
 United States hCoV-19/USA/NJ-NYUMC367/2020
 C241T C1059T C3037T C14408T G21520T A23403G G25563T

EPI_ISL_430395
 2020-04-09 2020-04-26
 United States hCoV-19/USA/NY-NYUMC368/2020
 C241T C1059T C3037T C14408T A23403G C24130T G25563T

EPI_ISL_430397
 2020-04-09 2020-04-26
 United States hCoV-19/USA/NY-NYUMC370/2020
 C241T C1059T C3037T G7560A C14408T C22295T A23403G G25563T

EPI_ISL_430408
 2020-04-09 2020-04-26
 United States hCoV-19/USA/NY-NYUMC381/2020
 C241T C1059T G2086T C3037T C14408T A23403G G25563T G29778A

EPI_ISL_430411
 2020-04-09 2020-04-26
 United States hCoV-19/USA/NY-NYUMC384/2020
 C241T C1059T C1917T C3037T C9967T C14408T A23403G G25563T

EPI_ISL_430413
 2020-04-09 2020-04-26
 United States hCoV-19/USA/NY-NYUMC386/2020
 C241T C3037T C14408T T14988C A23403G GGG28881AAC

EPI_ISL_430604 MT451777
 2020-04-09 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1159/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26959A C27964T

EPI_ISL_430615 MT451779
 2020-04-09 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1161/2020
 C241T C1059T C3037T C14408T C18744T A23403G G25563T C25572T C29284T

EPI_ISL_433420
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1170/2020
 C7423T

EPI_ISL_433434
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1317/2020
 G4207A

EPI_ISL_433851
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7ABF1/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_433863
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7ACB2/2020
 C241T C3037T C6027T C14408T A23403G GGG28881AAC

EPI_ISL_433864
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7ACC1/2020
 C241T C3037T C13774T C14408T A23403G GGG28881AAC

EPI_ISL_433877
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7ADDD/2020
 C241T T1177C C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433878
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7ADEC/2020
 C241T C3037T C6027T C14408T A23403G GGG28881AAC

EPI_ISL_433880
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AE07/2020
 C241T C3037T C6027T C14408T A23403G GGG28881AAC

EPI_ISL_433883
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AE43/2020
 C241T C3037T C14408T A23403G C25521T G28514T

EPI_ISL_433884
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AE52/2020
 C241T C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_433885
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AE61/2020
 A187G C241T C3037T C14408T A23403G C24133T

EPI_ISL_433886
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AE70/2020
 C241T G2164A C3037T C14408T A23403G T24063C GGG28881AAC

EPI_ISL_433888
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AEAD/2020
 C241T C3037T C14408T A16607G A23403G GGG28881AAC

EPI_ISL_433890
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AEDA/2020
 C241T C3037T C14408T C19140T A23403G GGG28881AAC

EPI_ISL_433891
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AEE9/2020
 C241T C3037T G8612T C14408T A23403G GGG28881AAC

EPI_ISL_433892
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AEF8/2020
 C241T C3037T C14408T A23403G C25521T G28514T

EPI_ISL_433902
 2020-04-09 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AFAA/2020
 C241T C3037T C3373A C6354T C9344T C11195T C14408T G17140T A23403G GGG28881AAC

EPI_ISL_434590 MT418880
 2020-04-09 2020-04-30
 United States SARS-CoV-2/human/USA/VA-DCLS-0095/2020
 ATTA1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G C29870A

EPI_ISL_434632
 2020-04-09 2020-04-30
 France hCoV-19/France/OCC-17/2020
 C241T C1710T C3037T C5467T C12672T C14408T C15324T C19602T A23403G

EPI_ISL_434633
 2020-04-09 2020-04-30
 France hCoV-19/France/OCC-18/2020
 C241T C3037T C14408T C15324T C19602T A23403G

EPI_ISL_435032
 2020-04-09 2020-05-01
 Democratic Republic of the Congo hCoV-19/DRC/1516/2020
 ATTAAAG1- C241T C3037T C14408T C15324T G16846T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_435034 MT432195
 2020-04-09 2020-05-01
 United States SARS-CoV-2/human/USA/LA-EVTL01/2020
 C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_435057
 2020-04-09 2020-05-02
 Turkey hCoV-19/Turkey/VETAL1902_1/2020
 A1GGAAAACACAA T3C -7AATTAATTTTTTATGTAAAAAAAAAAAAAAAAAAAAAAAAAGTTGGTT C241T A1814- A2130- C3037T T3833- C5100- C5736T C6078T T9628- G10265A T10528- T10606- T11075- T11096- A11991- G13124- C13476T C14408T T14988C G16846T T20406- C21409- T21784A C22210- A23403G C24245T G24290- A24813G T25673- A25964- T26409- C26549T T26551C G26746- C27103T T28148- C28331- GGG28881AAC -29904AAAAAAAAAAGTGWTACATTGTATGCTTTAGTGGCAGTACGTTTTTGCCGAGGCTTCTTAGAAGCCTCAGCAGCAGATTTCTTAGTGACAGTTTGGCCTTGTTGTTGTTGGCCTTTACCAGACATTTTGCTCTCAAGCTGGTTCAATCTGTCAA

EPI_ISL_435152
 2020-04-09 2020-05-03
 Italy hCoV-19/Italy/TE13858/2020
 C241T C3037T C5986T A6866W A6869W C14408T A23403G GGG28881AAC G29701T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_435154
 2020-04-09 2020-05-03
 Italy hCoV-19/Italy/TE14162/2020
 C241T C3037T A3921G A6866W A6869W C14408T A23403G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_435444
 2020-04-09 2020-05-05
 United States hCoV-19/USA/AK-PHL193/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T G11083T C14408T C16457T G22201A A23403G G25523T G25563T T27869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_435683
 2020-04-09 2020-05-05
 Singapore hCoV-19/Singapore/78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- G219R C5826T C6310A C6312A A8528R G11083T C13730T C19524T C23929T C28311T A29089G A29746G CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

EPI_ISL_436435
 2020-04-09 2020-05-06
 India hCoV-19/India/NCDC-3394/2020
 C16A G373K T658Y C842M G1439K G2778K G3606K G4559K C6312A T7621C T8022K G11083T G13531K G13564K G13639K C13730T G13892K T14627W C17502Y A23083W C23929T AG24389MS C24964M C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436440
 2020-04-09 2020-05-06
 India hCoV-19/India/NCDC-3936/2020
 C2223M C3604T C6312A G11083T C13730T A13853W G21351R C22350M C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436445
 2020-04-09 2020-05-06
 India hCoV-19/India/NCDC-3982/2020
 C1707Y G2081K T2087Y C2091Y C2094Y G3606K C4931Y C6312A G11083K C11490M C11518M C13730T A14207M G18007K C19524T T20891K AC20895WS A23118M C23929T C28311Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436587 MT706401
 2020-04-09 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1213T T2116A G11083T G17211T G23518A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436588 MT706402
 2020-04-09 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T C14937T C20148T C21859T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436590 MT706404
 2020-04-09 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7929G C9195T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437083 MT449674
 2020-04-09 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1083/2020
 ATTA1- G491A C10332Y A14940G T15922Y AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_437216
 2020-04-09 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0015/2020
 C241T C3037T C14408T A23403G

EPI_ISL_437299
 2020-04-09 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG9/2020
 C241T C14408T G15957T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_437371
 2020-04-09 2020-05-08
 United States hCoV-19/USA/MN-MDH-418/2020
 ATTA1- C241T C1059T C2878T C3037T C14408T A23403G G25563T A27821G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_437372
 2020-04-09 2020-05-08
 United States hCoV-19/USA/MN-MDH-435/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_437373
 2020-04-09 2020-05-08
 United States hCoV-19/USA/MN-MDH-436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_437411 MT450897
 2020-04-09 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0196/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437412 MT450898
 2020-04-09 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T C29870A

EPI_ISL_437432 MT450918
 2020-04-09 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C14408T C20719T A23403G G25563T C29870A

EPI_ISL_437477
 2020-04-09 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah159/2020
 ATTAAAGGTTTA1- C241T C3037T T7771C C14408T C18877T A23403G C24023T G25563T C26176T C26735T C28253T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437478
 2020-04-09 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah165/2020
 A1G T3C A5G G7A T10C -T12GGCTTAGCTCAGCTGAGGTCTCAGTTCAGGGTGTCCCACTTAGGATGTCAGCTCTGGGGAAGAATCTGCTCCCACACTCATTCAGGTTATTGGCAGAATTCAGTTCCTTGCGGTTGTAGGACTGAAGTCTCTGTTTCCTGGCTGTCGGTGGTGAGGGCAGCTCCCATCTCCTGGAGACCACTTGCAGTTCTGTGCCATAGGCCTTCTCATAACACTGCACCAGCGGCAGGGTCCCTCACATCAGATCCCCGTCATACTTCATGTCAGGCCCACCTGGGTGATCACTGTCTCGTAACATCAACTGACTTCAGCCCTTAATTCCATCTACAAAATCCCTGTGCAGCAGCACTAATCTAAC -17AGACTAATTTTTGACTGAGTAGCTAGGAGATAGGAATTTTGGGGGGCTGTCTTAGGAATTCTGCCTGCCACCATGAAGTTGGACTGGTGGCTGGGGTCAGGCCAACCAGGCTCATAGGGCATGGTGAGGACTTGAGGGTTTTGTTCTGATGAGGTGGGAGCAGCCTGAGTAAGGACCATCGTGG C241T C3037T C14408T C18877T A23403G G25563T C26735T -29865TCACTATGTGCAAAGGAGATTCGGTCGTGTGGTACTTATTCAGCGCCGGA -29870GGCCGATGTACATGGAATATACTTTT AA29872GG A29877C A29879C A29881T A29883G AA29885GG AAA29888GCG AA29892GG AA29895GG AA29899GG AA29902CGCGCGAGGGCCGGGACCCCGGGTGGCCGCCCCACCGGGGCCCGCGCGGCCAACCCCCGGGACGGGGACCGGCGGGCCACGGGCCCGGCTCGG

EPI_ISL_437479
 2020-04-09 2020-05-09
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah168/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T A14487C C18877T A23403G G25563T C26735T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_437529
 2020-04-09 2020-05-11
 United States hCoV-19/USA/OR-OHSU-0005/2020
 A187G C241T C1616T C3037T C14408T A23403G T25729C

EPI_ISL_437696
 2020-04-09 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah156/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C28000T

EPI_ISL_437697
 2020-04-09 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah163/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_437698
 2020-04-09 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah166/2020
 C8782T G22468T C25452T T28144C G28878A G29742A A29752G

EPI_ISL_437699
 2020-04-09 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah173/2020
 C241T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_437768 MT482115
 2020-04-09 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0129/2020
 ATTAAA1- C241T C1059T C3037T C10319T A12286G C12729T C13665T C14408T A23403G G25563T C27964T

EPI_ISL_437787 MT482134
 2020-04-09 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0154/2020
 ATTAAAGGTT1- A2480G C2558T TATTGAAGTGAA3331- G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_437788 MT482135
 2020-04-09 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1917T C3037T C14408T A23403G G25563T C29870V

EPI_ISL_438868
 2020-04-09 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR1997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C21575T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438956
 2020-04-09 2020-05-12
 Japan hCoV-19/Japan/Donner12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439147
 2020-04-09 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB1247/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_439753
 2020-04-09 2020-05-12
 United Kingdom hCoV-19/England/LIVE-99725/2020
 C241T C3037T G11083T C14408T A23403G C24026T

EPI_ISL_439780
 2020-04-09 2020-05-12
 United Kingdom hCoV-19/England/LIVE-99998/2020
 C241T C3037T C14408T T17126C A20268G A23403G A25589C T27986G G28703T

EPI_ISL_441942
 2020-04-09 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C342B/2020
 C241T C3037T C14408T G18803T C21614T A23403G

EPI_ISL_441999
 2020-04-09 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C6C20/2020
 C241T C3037T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_442350
 2020-04-09 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C9DFD/2020
 C241T C1059T C3037T C14408T C16260T A23403G G24368T G25563T

EPI_ISL_442354
 2020-04-09 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C9FF7/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_442432
 2020-04-09 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CD55B/2020
 C241T C1190T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_442448
 2020-04-09 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CEC19/2020
 G1440A C1911T G2891A

EPI_ISL_442479
 2020-04-09 2020-05-12
 United Kingdom hCoV-19/England/SHEF-D0CF6/2020
 C241T C3037T G7736A C14408T C15324T A23403G

EPI_ISL_442502
 2020-04-09 2020-05-12
 United Kingdom hCoV-19/England/SHEF-D1F74/2020
 C241T C3037T C14408T G18803T C21614T A23403G

EPI_ISL_443303
 2020-04-09 2020-05-12
 France hCoV-19/France/IDF5577/2020
 C241T C3037T G9130T T13273C C14408T A23403G C24381T G25563T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_443307
 2020-04-09 2020-05-12
 France hCoV-19/France/BFC6053/2020
 C36T C241T C3037T G10523C C14097T C14408T G14580T G20679A A23403G A29406C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_444147
 2020-04-09 2020-05-13
 United Kingdom hCoV-19/England/LOND-D472E/2020
 C241T C3037T G4285T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_444149
 2020-04-09 2020-05-13
 United Kingdom hCoV-19/England/LOND-D474C/2020
 C241T C3037T C14408T G17964T A23403G A26530G T29568C

EPI_ISL_444150
 2020-04-09 2020-05-13
 United Kingdom hCoV-19/England/LOND-D476A/2020
 C241T C3037T C8016T C14408T A23403G A26530G

EPI_ISL_444151
 2020-04-09 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4779/2020
 C241T C3037T C9246T A11430G C14408T C19602T A23403G G25429T T27299C

EPI_ISL_444152
 2020-04-09 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4788/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_444153
 2020-04-09 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4797/2020
 A2480G C2558T G11083T C14805T A15847T G26144T

EPI_ISL_445723
 2020-04-09 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B52E/2020
 ATTAAA1- G1148T A1515G C9223T G11083T C14805T T17247C G24620K G26144T

EPI_ISL_445766
 2020-04-09 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B816/2020
 ATTAAAGGTTT1- C241T C3037T T3100G G10097A C13584T C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_445767
 2020-04-09 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B825/2020
 T13C C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_445823
 2020-04-09 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2BC38/2020
 C241T C3037T C3425T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_446309
 2020-04-09 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-30A36/2020
 ATTAAAGGTTTA1- C241T C3037T C3096Y C14408T A23403G GGG28881AAC

EPI_ISL_446317
 2020-04-09 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-30ABE/2020
 AT1- ATG1605- G18079T

EPI_ISL_447817
 2020-04-09 2020-05-18
 Colombia hCoV-19/Colombia/GVI97527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T T12730G C14408T C18877T A23403G G25563T AAAAAAAA29896-

EPI_ISL_448142
 2020-04-09 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2038/2020
 C241T C3037T G3831A C14408T A23403G

EPI_ISL_448844
 2020-04-09 2020-05-19
 United Kingdom hCoV-19/England/SHEF-C41BA/2020
 C241T C3037T CT14408TC A23403G GGG28881AAC

EPI_ISL_448982
 2020-04-09 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6E24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C13694T C14408T A23403G T24910C G25429T G28643R

EPI_ISL_449013
 2020-04-09 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7227/2020
 ATTA1- C241T T1623C C3037T C14408T A23403G G25166C GGG28881AAC

EPI_ISL_449120
 2020-04-09 2020-05-19
 United Kingdom hCoV-19/England/NORW-E81CF/2020
 AT1- C241T C3037T C9559T C14408T A20268G A23403G C25714T GCCACGCGGAGTAC29737-

EPI_ISL_449832 MT535503
 2020-04-09 2020-05-19
 United States SARS-CoV-2/Human/USA/UT-01594/2020
 C241T C2416T C3037T TTTGACACATGG8765- C14408T C16568T G19466K A23403G G25563T

EPI_ISL_449866 MT641631
 2020-04-09 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S696/2020
 C8782T C17010T C17747T A17858G C18060T T28144C

EPI_ISL_449870 MT641623
 2020-04-09 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S700/2020
 C1912T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_449874 MT641571
 2020-04-09 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S704/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_449875 MT641625
 2020-04-09 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S705/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_449878 MT641617
 2020-04-09 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S708/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_449879 MT641485
 2020-04-09 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S709/2020
 C241T C1059T C3037T A3421G G3955T G7560A G11083T C14408T G19999T G21452T A23403G G25563T

EPI_ISL_450559
 2020-04-09 2020-05-21
 United States hCoV-19/USA/UT-01234/2020
 ATTAAA1- C241T C3037T A3841T A6512C C14408T C18877T A23403G G25563T C29870A

EPI_ISL_451178
 2020-04-09 2020-05-23
 Belgium hCoV-19/Belgium/UGent-67/2020
 C241T G960A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_451179
 2020-04-09 2020-05-23
 Belgium hCoV-19/Belgium/UGent-68/2020
 C241T C3037T G3320T A11782G C14408T G15243T A23403G

EPI_ISL_452149
 2020-04-09 2020-05-26
 Belgium hCoV-19/Belgium/20A44/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C1059T C3037T C14408T A23403G G25563T G29291A T29848A A29850T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_452796 MT558647
 2020-04-09 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C14408T C20719T A23403G G25563T C29870A

EPI_ISL_452811 MT558662
 2020-04-09 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0236/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G C24034T G25563T C29870A

EPI_ISL_452814 MT558665
 2020-04-09 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0239/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T A13318G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_454268
 2020-04-09 2020-05-28
 Portugal hCoV-19/Portugal/PT0544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C14408T T20260C A23403G G24077T T28705C C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454574
 2020-04-09 2020-05-28
 Croatia hCoV-19/Croatia/OY-S1new/2020
 C241T C3037T C4618G C10078T C14408T A23403G AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_455179
 2020-04-09 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T C8016T T9508C C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455180
 2020-04-09 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T G21296A A23403G C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455241
 2020-04-09 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18457T A23403G A24862G C27741T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455281
 2020-04-09 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C28826T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455306
 2020-04-09 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C14408T A23403G C24381T A24862G G27676C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455312
 2020-04-09 2020-05-29
 Malaysia hCoV-19/Malaysia/IIUM316/2020
 C6312A G11083T C13730T C19524T G22021T C23929T C25665T C28311T

EPI_ISL_455478
 2020-04-09 2020-05-30
 India hCoV-19/India/RMRC49/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18877T A23403G G25563T G26155T G26724T C26735T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_455709
 2020-04-09 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_4851/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_455710
 2020-04-09 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_4868/2020
 C241T C3037T C11824T C14408T A23403G GGG28881AAC

EPI_ISL_455719
 2020-04-09 2020-06-01
 Turkey hCoV-19/Turkey/VETAL1902_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A G11083T C13730T C19524T G22021T C23929T C25665T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456089
 2020-04-09 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C643T C3037T C14408T G19684T A22720G A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456090
 2020-04-09 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7111C C14408T A23403G C23613T C25672A T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456091
 2020-04-09 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A18366G A23403G G25135T T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456347
 2020-04-09 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2049/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456362
 2020-04-09 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2075/2020
 C241T C3037T C4683T C14408T A23403G G24077T

EPI_ISL_456363
 2020-04-09 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2076/2020
 C241T C3037T C4683T C14408T A23403G G24077T

EPI_ISL_456364
 2020-04-09 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2077/2020
 C241T C3037T C4683T C14408T A23403G G24077T

EPI_ISL_456365
 2020-04-09 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2078/2020
 C241T C3037T C4683T C14408T A23403G G24077T

EPI_ISL_456893
 2020-04-09 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB1310/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_457079
 2020-04-09 2020-06-02
 United Kingdom hCoV-19/England/EXET-13563C/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457093
 2020-04-09 2020-06-02
 United Kingdom hCoV-19/England/EXET-135748/2020
 C241T A2139C C3037T G10282A G11417T C14408T A23403G C25350T G29648T

EPI_ISL_457122
 2020-04-09 2020-06-02
 United Kingdom hCoV-19/England/EXET-1359CA/2020
 C241T C3037T C5005T C9638T C14408T A23403G GGG28881AAC

EPI_ISL_457130
 2020-04-09 2020-06-02
 United Kingdom hCoV-19/England/EXET-135A6D/2020
 C241T G2164A C3037T G11417T C14408T A23403G GGG28881AAC

EPI_ISL_457135
 2020-04-09 2020-06-02
 United Kingdom hCoV-19/England/EXET-135B2E/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC

EPI_ISL_457136
 2020-04-09 2020-06-02
 United Kingdom hCoV-19/England/EXET-135B4C/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC

EPI_ISL_457142
 2020-04-09 2020-06-02
 United Kingdom hCoV-19/England/EXET-135BB5/2020
 C241T C3037T C8344T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457164
 2020-04-09 2020-06-02
 United Kingdom hCoV-19/England/EXET-135D91/2020
 C241T C3037T C14408T A23403G C23683T GGG28881AAC

EPI_ISL_457169
 2020-04-09 2020-06-02
 United Kingdom hCoV-19/England/EXET-135DEC/2020
 A2480G C2558T G11083T C14805T G26144T C26256T C28708T

EPI_ISL_458131
 2020-04-09 2020-06-03
 Spain hCoV-19/Spain/Barcelona_VH9461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C50A C241T C3037T C14408T C15738T A20268G C20844T A23403G T24793A

EPI_ISL_458241
 2020-04-09 2020-06-04
 United States hCoV-19/USA/CA-SR0356/2020
 C241T C1059T C3037T C6629T T14145C C14408T C23277T A23403G G25563T

EPI_ISL_458915
 2020-04-09 2020-06-04
 United Kingdom hCoV-19/England/BRIS-126B11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4399T C14408T C18744Y T19839C A23403G C23987Y GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_458956
 2020-04-09 2020-06-04
 United Kingdom hCoV-19/England/BRIS-1269BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G3239T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459083
 2020-04-09 2020-06-04
 United Kingdom hCoV-19/England/BRIS-126AD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C8655T C14408T G17679T C18747Y A23403G C25521A C25528T GGG28881AAC G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460649
 2020-04-09 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4113T C6555T C14408T G18281A A20755C A23403G G25563T G25784T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460802
 2020-04-09 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C421T C1594T C2094T C3037T A8780G C11109T C14408T C21691T A23403G A24647G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460836
 2020-04-09 2020-06-06
 Netherlands hCoV-19/Netherlands/Flevoland_13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2086T C8782T G16381A G16864A T28144C G28878A G29742A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460931
 2020-04-09 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C16084T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461234
 2020-04-09 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T T13006C A14304G C14408T G19684T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462260
 2020-04-09 2020-06-08
 Belgium hCoV-19/Belgium/BJA-0409406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14980T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462261
 2020-04-09 2020-06-08
 Belgium hCoV-19/Belgium/DJ-0409407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3267T C14408T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462269
 2020-04-09 2020-06-08
 Belgium hCoV-19/Belgium/DGL-0409415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G C10834T G11083T C14805T T17247C G26144T G27788T A29598G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462352
 2020-04-09 2020-06-08
 Singapore hCoV-19/Singapore/234/2020
 T202W C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462379
 2020-04-09 2020-06-08
 Singapore hCoV-19/Singapore/261/2020
 G56A C5826T C6310A C6312A G11083T C13730T C19524T C23929T C28311T C28512Y A29089G T29672C AAAAAAAAAAAA29892-

EPI_ISL_462381
 2020-04-09 2020-06-08
 Singapore hCoV-19/Singapore/263/2020
 C5826T C6310A C6312A G11083T G11540K C13730T C19524T C23929T C28311T A29089G AAAAAAAAAAAA29892-

EPI_ISL_462400
 2020-04-09 2020-06-08
 Singapore hCoV-19/Singapore/282/2020
 C1044Y C6310A C6312A G8726R G11083T C13730T A17322G C19524T C23929T C27434Y C28311T AAAAAAAAAAAA29892-

EPI_ISL_462402
 2020-04-09 2020-06-08
 Singapore hCoV-19/Singapore/284/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462414
 2020-04-09 2020-06-08
 Singapore hCoV-19/Singapore/296/2020
 C241T C3037T C8730T C13730T C14408T C20104Y A23403G G25429T C27416A AAAAAAAAAAAA29892-

EPI_ISL_463468 MT642417
 2020-04-09 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S978/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463469 MT642241
 2020-04-09 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S979/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463471 MT642380
 2020-04-09 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S981/2020
 ATT1- C8782T C10818T C14937T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463917
 2020-04-09 2020-06-11
 Canada hCoV-19/Canada/QC_AI5/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_463922
 2020-04-09 2020-06-11
 Canada hCoV-19/Canada/QC_AO7/2020
 C241T A257G C3037T C14408T C15324T A23403G C25096T C25433T

EPI_ISL_463923
 2020-04-09 2020-06-11
 Canada hCoV-19/Canada/QC_AO9/2020
 C241T C3037T C14408T C15324T C20283T A23403G C25433T

EPI_ISL_463968
 2020-04-09 2020-06-11
 Canada hCoV-19/Canada/QC_BC5/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_464085
 2020-04-09 2020-06-11
 Belgium hCoV-19/Belgium/VJ-0409291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3176T A13947T C14408T T15394C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464088
 2020-04-09 2020-06-11
 Belgium hCoV-19/Belgium/LEV-0409294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1125A C3037T A13947T C14408T T21976C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464089
 2020-04-09 2020-06-11
 Belgium hCoV-19/Belgium/LKJ-0409295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G256A C683T G11083T C14805T T17247C G23426T G26144T C28528T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464090
 2020-04-09 2020-06-11
 Belgium hCoV-19/Belgium/SA-0409296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_464131
 2020-04-09 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5209G C14408T A23403G A24862G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_464132
 2020-04-09 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_21/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A5209G T9865G C14408T A23403G A24862G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_464133
 2020-04-09 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T A5209G C14408T C19186T A23403G A24862G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_464134
 2020-04-09 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_23/2020
 T8022G A8026T G9471C C14408T C15952T A23403G AG24389CC A24862G T29595C

EPI_ISL_464135
 2020-04-09 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_24/2020
 C241T A454G A5209G C6255T T8022G C14408T C15952T T20891G A23403G AG24389CC A24862G

EPI_ISL_464136
 2020-04-09 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_25/2020
 C241T A5209G C6255T T8022G A8026T A14207C C14408T C15952T T20891G A23403G AG24389CC A24862G

EPI_ISL_464137
 2020-04-09 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_26/2020
 ATTAAAGGTTTATACCT1- C241T C3037T A5209G C14408T A23403G A24862G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_464138
 2020-04-09 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5209G A13748G C14408T A23403G A24862G G28373T G29227T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_464139
 2020-04-09 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_28/2020
 C241T A454G A5209G C6255T T8022G C14408T C15952T T20891G A23403G AG24389CC A24862G C25680G

EPI_ISL_464153
 2020-04-09 2020-06-11
 South Africa hCoV-19/SouthAfrica/Tygerberg_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC GACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29706-

EPI_ISL_465276
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/20170032004/2020
 C241T C3037T C5622T T10009G C14408T C15371T A23403G GGG28881AAC

EPI_ISL_465277
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/20170032104/2020
 C241T C3037T C14408T A23403G GGG28881AAC A29878M A29887C

EPI_ISL_465278
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/20170032204/2020
 C241T C3037T C13458Y C14408T A23403G GGG28881AAC G29751T

EPI_ISL_465290
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/20170037804/2020
 C241T C3037T C6723T A8972R C14408T A23403G GGG28881AAC

EPI_ISL_465348
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/20172045804/2020
 C241T T2827C C3037T C5622T T10009G C14408T C15371T A23403G GGG28881AAC

EPI_ISL_465349
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/20172045904/2020
 C241T C3037T C14408T C15371T A23403G GGG28881AAC

EPI_ISL_466278
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/20156000204/2020
 C241T C2416T C3037T G11083K C14408T C14786T G20578T A23403G G25563K T27254K

EPI_ISL_466317
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/20156043304/2020
 C21T C241T C3037T C14408T A23403G C25350T G25429T

EPI_ISL_466324
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/20156047404/2020
 C241T C3037T T3100G A4892G G10097A C10377T C14408T G17193A A23403G C23731T G25947T GGG28881AAC A29839M

EPI_ISL_466346
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/201580017/2020
 C241T C3037T C5784T C14408T A23403G GGG28881AAC

EPI_ISL_466356
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/201580161/2020
 C241T G1820A T2519Y C3037T C4686Y G7544K G10877K C14408T A23403G G24933K G28514T G29810A T29867G

EPI_ISL_466359
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/201580189/2020
 A2480G C2558T C3037Y G4185A G11083T C14805T G20477K G26144T C29013T

EPI_ISL_466363
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/201580278/2020
 C241T C3037T A3234G T4946G C14408T A23403G GGG28881AAC AA29894CC

EPI_ISL_466365
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/201580284/2020
 C241T C1059T C3037T C14408T A15369G A23403G G24368T G25563T C29284T

EPI_ISL_466366
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/201580285/2020
 C241T C1059T C3037T C14408T A15369G A23403G G24368T G25563T C29284T

EPI_ISL_466367
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/201580290/2020
 C241T C2416T C3037T T11503K C14408T C14786T G20578T G22630R A23403G G25563T C27575Y

EPI_ISL_466474
 2020-04-09 2020-06-11
 United Kingdom hCoV-19/England/20164072304/2020
 C241T C3037T C9561T C14408T G21624T A23403G GGG28881AAC

EPI_ISL_468363 MT628100
 2020-04-09 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G8525A A17482G C19206T T21126C C28887T AAA29901-

EPI_ISL_468541 MT628264
 2020-04-09 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C4540T G4904T G5206T T8641Y C11460Y C14408T A23403G C24138T C25350T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_468656
 2020-04-09 2020-06-16
 Croatia hCoV-19/Croatia/AU-S10new/2020
 C241T C3037T C10078T C14408T A23403G C27367T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_468722 MT620771
 2020-04-09 2020-06-15
 United States SARS-CoV-2/human/USA/UF-18/2020
 ATTAAAGGTTT1- C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T A25744G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_470392
 2020-04-09 2020-06-18
 United Kingdom hCoV-19/England/CAMB-800DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G4185A G11083T A11590G A11822G C14805T G26144T C26366Y C29013T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470427
 2020-04-09 2020-06-18
 United Kingdom hCoV-19/England/CAMB-80071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26873T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470456
 2020-04-09 2020-06-18
 United Kingdom hCoV-19/England/CAMB-80545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470478
 2020-04-09 2020-06-18
 United Kingdom hCoV-19/England/CAMB-7F85F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- T1905G C3037T C14408T C15324T A23403G C29028T CACCGAGGCCACGCGGAGTACGATCGAGTG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470490
 2020-04-09 2020-06-18
 United Kingdom hCoV-19/England/CAMB-7F734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1263T G2250C C3037T C9438T G10262A C14408T T19839C C22995T A23403G A27669G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470514
 2020-04-09 2020-06-18
 United Kingdom hCoV-19/England/CAMB-801C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T A21040G A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471185
 2020-04-09 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5239T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471187
 2020-04-09 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471418
 2020-04-09 2020-06-21
 Romania hCoV-19/Romania/Focsani-268927/2020
 T358C C3037T G6975A C6997T A8703G T10061C G10318T AA10322CC C11074T T15686A T17723G G19845A A20805C A22948C T23160A A23403G C25624T T25949G

EPI_ISL_473004
 2020-04-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160A1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T4186C C6027T G11801A C14408T T19839C A23403G G25552T G25563T GGG28881AAC

EPI_ISL_473781
 2020-04-09 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3842/2020
 C241T C3037T C14408T C19170T G19509A G20134T A23403G GGG28881AAC

EPI_ISL_473847
 2020-04-09 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5730/2020
 A497G ATG1605- C6696T C11001T

EPI_ISL_473848
 2020-04-09 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5731/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G T24923C G25563T

EPI_ISL_473849
 2020-04-09 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5732/2020
 A2480G C2558T G11083T C14805T C25047T G26144T

EPI_ISL_474322
 2020-04-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-30FBF/2020
 A1- C241T C3037T T3100G G4124A G10097A G12769T C14408T A23403G C23731T T25711C G25947T G28077T GGG28881AAC

EPI_ISL_474958
 2020-04-09 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6744/2020
 C241T T2068C T3300C A3633T G5425T C14408T C17304T A23403G A24430T T27049C C28256A G28809A GGG28881AAC

EPI_ISL_474959
 2020-04-09 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6750/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_474961
 2020-04-09 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6051/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_474976
 2020-04-09 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6731/2020
 C241T C1059T C3037T A3314G C4071T G4207T G4300T T5767C T9260C G9497T C9502T T9676C C11916T C14408T T15167C C17304T C18998T A22305G A23403G G25563T T25885A C26469A T26510- C28256A GGG28881AAC G29540A

EPI_ISL_474977
 2020-04-09 2020-06-23
 Israel hCoV-19/Israel/CVL-n-6735/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475124
 2020-04-09 2020-06-23
 Sweden hCoV-19/Sweden/20-08870/2020
 C241T C3037T C14195A C14408T A17039G A23403G

EPI_ISL_475156
 2020-04-09 2020-06-23
 Sweden hCoV-19/Sweden/20-08842/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_475603
 2020-04-09 2020-06-23
 United States hCoV-19/USA/CA-CSMC126/2020
 C241T C1059T C3037T C10183T C11750T C14408T A23403G G25563T

EPI_ISL_475605
 2020-04-09 2020-06-23
 United States hCoV-19/USA/CA-CSMC128/2020
 C241T C913T C1059T C3037T C11916T C14408T C18998T C22450T A23403G G25563T G29427A G29540A

EPI_ISL_475658
 2020-04-09 2020-06-23
 United States hCoV-19/USA/CA-CSMC46/2020
 C241T C379A C1059T C3037T C14408T G16855A C21621T A23403G G25563T C29548T

EPI_ISL_475659
 2020-04-09 2020-06-23
 United States hCoV-19/USA/CA-CSMC47/2020
 C241T C1059T C3037T T13575C C14408T T16506C A23403G C25466T G25563T

EPI_ISL_475660
 2020-04-09 2020-06-23
 United States hCoV-19/USA/CA-CSMC48/2020
 C241T C1059T C3037T T13575C C14408T T16506C A23403G C25466T G25563T G29868A

EPI_ISL_475930
 2020-04-09 2020-06-25
 Austria hCoV-19/Austria/CeMM0621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15957T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475931
 2020-04-09 2020-06-25
 Austria hCoV-19/Austria/CeMM0622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3793Y G7647K T14049Y G14181K C14408T G15957T T17009Y C18877T A23403G G24038K G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475953
 2020-04-09 2020-06-25
 Singapore hCoV-19/Singapore/422/2020
 A1124G C6312A C8139T C11074Y G11083T C13730T C23929T C25571Y G25660K C28311T AAAAAAAAAAAA29892-

EPI_ISL_476072
 2020-04-09 2020-06-25
 Hungary hCoV-19/Hungary/UD-7039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476073
 2020-04-09 2020-06-25
 Hungary hCoV-19/Hungary/UD-7040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G G27754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476145
 2020-04-09 2020-06-25
 Sweden hCoV-19/Sweden/20-08865/2020
 C241T C3037T C14195A C14408T A17039G A23403G

EPI_ISL_476146
 2020-04-09 2020-06-25
 Sweden hCoV-19/Sweden/20-08866/2020
 C241T C3037T C14195A C14408T A17039G A23403G

EPI_ISL_476147
 2020-04-09 2020-06-25
 Sweden hCoV-19/Sweden/20-08869/2020
 C241T C3037T C14195A C14408T A17039G A23403G G29243A

EPI_ISL_476508
 2020-04-09 2020-06-25
 Canada hCoV-19/Canada/QC_AM1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T A27926G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476704
 2020-04-09 2020-06-25
 Venezuela hCoV-19/Venezuela/VEN-95072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C10507T C14408T C18877T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_476840
 2020-04-09 2020-06-26
 India hCoV-19/India/DRDE 530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C13730T T22357C AG24389CC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476941
 2020-04-09 2020-06-27
 Belgium hCoV-19/Belgium/rega-0409431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1125A C3037T A13947T C14408T T21976C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476942
 2020-04-09 2020-06-27
 Belgium hCoV-19/Belgium/rega-0409433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476943
 2020-04-09 2020-06-27
 Belgium hCoV-19/Belgium/rega-0409434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4011C G4261A G7042T C14408T G20433A C21110T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476944
 2020-04-09 2020-06-27
 Belgium hCoV-19/Belgium/rega-0409435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476945
 2020-04-09 2020-06-27
 Belgium hCoV-19/Belgium/rega-0409436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1213T C3037T A5541T G7100A A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476946
 2020-04-09 2020-06-27
 Belgium hCoV-19/Belgium/rega-0409437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C25771T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476947
 2020-04-09 2020-06-27
 Belgium hCoV-19/Belgium/rega-0409438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6720T C7834T A11839G C14408T T19839C T23371C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476948
 2020-04-09 2020-06-27
 Belgium hCoV-19/Belgium/rega-0409439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8836T A11839G C14408T T19839C A23403G G25234T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476949
 2020-04-09 2020-06-27
 Belgium hCoV-19/Belgium/rega-0409497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9805A C14408T T19839C A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478742
 2020-04-09 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF48F/2020
 C241T C1594T C3037T C6723T C14408T A23403G GGG28881AAC AAA29901-

EPI_ISL_478753
 2020-04-09 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF5C8/2020
 A2480G C2558T G11083T C14805T A16388C G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_478756
 2020-04-09 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF601/2020
 ATTAAAGGTTTAT1- C28T C241T C3037T G11417T C14408T A23403G GGG28881AAC G29755A AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_478794
 2020-04-09 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFA05/2020
 C241T C3037T C11067T C14408T G19072T A22259G A23403G GGG28881AAC

EPI_ISL_478798
 2020-04-09 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFA41/2020
 ATTAAA1- C241T C3037T C7735T C14408T C15810T C17352T A20268G C22295T A23403G G29734C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_478811
 2020-04-09 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFBC6/2020
 C241T C3037T G11801A C14408T T18831C A23403G GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_478822
 2020-04-09 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFD0C/2020
 C222T C241T C3037T C13424T C14408T C18526T G22022C A23403G A28779G GGG28881AAC C29733T AAAAAAAAAAA29893-

EPI_ISL_478829
 2020-04-09 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFE45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C9430T C14408T C16289T G16957T A23403G G25429T C27046T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_478974
 2020-04-09 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0EBA/2020
 C241T C3037T C9430T C14408T C16289T A23403G G25429T C27046T

EPI_ISL_478975
 2020-04-09 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0ED8/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAA29896-

EPI_ISL_478977
 2020-04-09 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0F11/2020
 C241T G1820A C3037T C14408T A16881G A23403G C26942T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_478979
 2020-04-09 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0F3F/2020
 G7743T G11083T C12116T C14267T C14805T T17247C G24834T G25477T G26144T

EPI_ISL_479766
 2020-04-09 2020-07-01
 United States hCoV-19/USA/FL-Miami-06_UMTL-A3MJ/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C673T G1580A C3037T T4125C C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_480214
 2020-04-09 2020-07-01
 Japan hCoV-19/Japan/PG-0566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G C25728T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480215
 2020-04-09 2020-07-01
 Japan hCoV-19/Japan/PG-0572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C823T C3037T C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480216
 2020-04-09 2020-07-01
 Japan hCoV-19/Japan/PG-0573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_480398 MT772565
 2020-04-09 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3653T C7712T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481235
 2020-04-09 2020-07-02
 Senegal hCoV-19/Senegal/3331/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_481730
 2020-04-09 2020-07-03
 Finland hCoV-19/Finland/9A18S12/2020
 C241T C1059T C3037T C12153T C12231T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481732
 2020-04-09 2020-07-03
 Finland hCoV-19/Finland/9A30S12/2020
 C241T C2110A C3037T C14408T A23403G G29243A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481733
 2020-04-09 2020-07-03
 Finland hCoV-19/Finland/9A40S12/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481734
 2020-04-09 2020-07-03
 Finland hCoV-19/Finland/9A784S11A/2020
 C241T C1059T C3037T C9565T A13653G C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481735
 2020-04-09 2020-07-03
 Finland hCoV-19/Finland/9A785S11A/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481736
 2020-04-09 2020-07-03
 Finland hCoV-19/Finland/9A797S11A/2020
 C241T C1059T C3037T C14408T G19525A A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481737
 2020-04-09 2020-07-03
 Finland hCoV-19/Finland/9A798S11A/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C29466T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481738
 2020-04-09 2020-07-03
 Finland hCoV-19/Finland/9A800S11A/2020
 C241T C1059T C3037T C14408T T15519C G21974C A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481739
 2020-04-09 2020-07-03
 Finland hCoV-19/Finland/9A81S12/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481740
 2020-04-09 2020-07-03
 Finland hCoV-19/Finland/9A85S12/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482297
 2020-04-09 2020-07-03
 United States hCoV-19/USA/OR-PROV-009/2020
 A4236G G11083T C14805T T25655C G26144T G28632T

EPI_ISL_483175
 2020-04-09 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0489-SAN/2020
 AT1- C241T C920T C3037T C14408T A20268G A23403G T23449C C28854T

EPI_ISL_483195
 2020-04-09 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0516-SAN/2020
 ATT1- C241T C920T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_483200
 2020-04-09 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0522-SAN/2020
 ATTAAAGGTTTATACC1- C241T C3037T G4225T C14408T A23403G GGG28881AAC

EPI_ISL_483350
 2020-04-09 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0774-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1274T C3037T C14408T C16762T C17491T A23403G G25563T

EPI_ISL_483389
 2020-04-09 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0833-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G4225T C14408T A23403G GGG28881AAC

EPI_ISL_483459
 2020-04-09 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1007-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T C3037T C14408T A20268G A23403G T23449C C28854T

EPI_ISL_483471
 2020-04-09 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1027-SAN/2020
 A1- C241T C920T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_484538
 2020-04-09 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR1983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3411T C3885T A5353G C14408T C17104T A20268G A23403G C28253T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484540
 2020-04-09 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484541
 2020-04-09 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C7926T G11083T C14805T G26144T C27600T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484542
 2020-04-09 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484546
 2020-04-09 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484547
 2020-04-09 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T A16373R C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484548
 2020-04-09 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C4456T C12710T G17592T C21575T C27737T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484549
 2020-04-09 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C21575T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485328
 2020-04-09 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7378C C14408T G21578T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485331
 2020-04-09 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C9246T G13126A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485333
 2020-04-09 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485335
 2020-04-09 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T145C C241T C1059T C3037T C14408T A23403G G25563T C27964T C28706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485351
 2020-04-09 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T C17285T A23403G C23613T T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486917 MT742092
 2020-04-09 2020-07-10
 United States SARS-CoV-2/human/USA/MD-MDH-0038/2020
 A1- C241T C1059T C3037T C14408T C17518T C21952G A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_487451
 2020-04-09 2020-07-14
 Mali hCoV-19/Mali/M002659/2020
 ATTAAAGGTTTATAC1- C8782T G11083T C26366T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_487452
 2020-04-09 2020-07-14
 Mali hCoV-19/Mali/M002663/2020
 ATTAAAGGTTTATAC1- C853T C8782T C10626T G22468T C25904T C25936T T28144C G28878A G29742A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_487661
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T T12388C C14408T C16289T G21624R A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487670
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487688
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487706
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487708
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3425T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487712
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21622T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487741
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12400T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487743
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487746
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T14901C C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487770
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5136G C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487790
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5144T C6286T C14408T A23403G A26090G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487831
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6578T C14408T C18348T A23403G AAATTG26096- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487874
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487916
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T T12388C C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487923
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487930
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487952
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T C14408T A23403G G25691R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487959
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488351
 2020-04-09 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2706T A7025G C9724T G11083T C14805T A25998G G26144T G26173T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489858 EPI_ISL_491054
 2020-04-09 2020-07-14
 Romania hCoV-19/Romania/ROSV_1345/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T2593C C3037T C14408T A20268G A23403G C29218T GAATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGA29220- A29827T G29830- TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_490646
 2020-04-09 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR1992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C21575T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490657
 2020-04-09 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR2058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3468A C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491050
 2020-04-09 2020-07-16
 Romania hCoV-19/Romania/ROSV_1296/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A19464G A20268G A23403G C23525T CAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29762-

EPI_ISL_491052
 2020-04-09 2020-07-16
 Romania hCoV-19/Romania/ROSV_1332/2020/P1
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C8655T T9697C C14408T T17137C A20268G A23403G T25473C A29827T GCTATCCCCATG29830- T29845C TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847C

EPI_ISL_491559
 2020-04-09 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G362A C3037T G5230T C9661Y C14408T T14766C G15327K A20268G A23403G G27021C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491564
 2020-04-09 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T C19018Y A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491662
 2020-04-09 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2987C C3037T A3215G C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491928 MT776423
 2020-04-09 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_3086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491942 MT776422
 2020-04-09 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_3082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G TATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTT28007- GGG28881AAC C29635T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492281
 2020-04-09 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18536B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5629A C14408T T19839C A23403G G25552T C25714T GGG28881AAC G29262T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492516
 2020-04-09 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FD30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17821T G17964A T22043A A23403G C23575T G24959T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492518
 2020-04-09 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FD12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T809C C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492552
 2020-04-09 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FD21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17821T G17964A T22043A A23403G C23575T G24959T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492670
 2020-04-09 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FD4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492765
 2020-04-09 2020-07-20
 United Kingdom hCoV-19/England/BRIS-124612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A19543C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492787
 2020-04-09 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1246A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492792
 2020-04-09 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1244EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3692T C5512T C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492826
 2020-04-09 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12468B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C14408T A23403G T27576C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492833
 2020-04-09 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1244FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5416T C5512T C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492880
 2020-04-09 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C4900T C14408T G17331T A23403G C28311T GGG28881AAC G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494438
 2020-04-09 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1208/2020
 C241T C920T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494439
 2020-04-09 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1209/2020
 ATTAAAGGTTT1- C241T C920T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494440
 2020-04-09 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1210/2020
 C241T C920T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494449
 2020-04-09 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1225/2020
 ATTAAAGGTTTA1- C241T C920T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_495304 MT791941
 2020-04-09 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0631/2020
 ATT1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_495327 MT791961
 2020-04-09 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T T19533C A23403G G25563T

EPI_ISL_495602
 2020-04-09 2020-07-23
 United States hCoV-19/USA/MN-MDH-1303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T G14350T C17747T A17858G C18060T A24694T T28144C G28812T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_498164
 2020-04-09 2020-07-27
 Colombia hCoV-19/Colombia/95637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498165
 2020-04-09 2020-07-27
 Colombia hCoV-19/Colombia/95663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9050T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498736 MT806797
 2020-04-09 2020-07-27
 United States SARS-CoV-2/human/USA/NV-QDX-217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15540T A18478G A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508918
 2020-04-09 2020-08-04
 France hCoV-19/France/ARA22592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_508919
 2020-04-09 2020-08-04
 France hCoV-19/France/ARA22647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C241T C3037T T6511C C14408T A23403G G25563T TAAAGTTTCCATTTGGAATCTTGATTACATCATA27267- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508920
 2020-04-09 2020-08-04
 France hCoV-19/France/ARA22650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C3037T T6511C C14408T A23403G G25563T TAAAGTTTCCATTTGGAATCTTGATTACATCATA27267- AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_508921
 2020-04-09 2020-08-04
 France hCoV-19/France/ARA22670/2020
 ATTAAAGGTT1- C241T C3037T A11935C C12132T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_508922
 2020-04-09 2020-08-04
 France hCoV-19/France/ARA22864/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_509714 MT844027
 2020-04-09 2020-08-05
 Belize SARS-CoV-2/human/BLZ/CDC-6852/2020
 C241T C1059T C3037T C14408T C14925T A23261W A23403G C23525T G25563T A26041G C26404Y G29179T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_510421
 2020-04-09 2020-08-06
 Spain hCoV-19/Spain/COV004306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C8782T T9477A C14805T C21622Y G25979T T28144C C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_511481
 2020-04-09 2020-08-08
 Portugal hCoV-19/Portugal/PT0568a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2370T C3037T A6308G C14408T A22671G A23403G A28920C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511492
 2020-04-09 2020-08-08
 Portugal hCoV-19/Portugal/PT0942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511494
 2020-04-09 2020-08-08
 Portugal hCoV-19/Portugal/PT0944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G C24374T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511875
 2020-04-09 2020-08-09
 United States hCoV-19/USA/MD-HP01661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5555A C14408T A23403G G24368C G25563T C27005T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515214
 2020-04-09 2020-08-18
 Canada hCoV-19/Canada/QC_AM4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515216
 2020-04-09 2020-08-18
 Canada hCoV-19/Canada/QC_AM8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10747T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515234
 2020-04-09 2020-08-18
 Canada hCoV-19/Canada/QC_AX3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515908
 2020-04-09 2020-08-20
 United States hCoV-19/USA/CA-CDPH015/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C18998T C19102T A23403G G25563T G29540A

EPI_ISL_522693 MT973331
 2020-04-09 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C4540T A4624G C8782T T9477A C14805T G25979T G26062T G26918K T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522866
 2020-04-09 2020-08-26
 Italy hCoV-19/Italy/VR-IZSVe-63-7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T C14408T A20268G A23403G C26447Y AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_524498
 2020-04-09 2020-08-28
 United Kingdom hCoV-19/England/CAMB-8030F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524551
 2020-04-09 2020-08-28
 United Kingdom hCoV-19/England/CAMB-80202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T G14452A C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524564
 2020-04-09 2020-08-28
 United Kingdom hCoV-19/England/CAMB-802A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26873T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524570
 2020-04-09 2020-08-28
 United Kingdom hCoV-19/England/CAMB-7F998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524795
 2020-04-09 2020-08-28
 Brazil hCoV-19/Brazil/AP-IEC-163359/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_524875
 2020-04-09 2020-08-28
 United States hCoV-19/USA/MD-MDH-0147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C6730T A6866T A6869T T6874C C14408T C14805T A23403G G25563T G29868-

EPI_ISL_525558
 2020-04-09 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-4357/2020
 A1CCGTCGA C241T C3037T C4438T C9714T C14408T C16394T A23403G C23410T G26227T GGG28881AAC AA29879TT AAAA29883TTTT A29888C A29890C AA29892TT AAAAAAAAA29895G

EPI_ISL_525559
 2020-04-09 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-4431/2020
 A1GGTCCCGGA C241T C2434T C3037T C14408T C18029T A23403G C25889T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_525663
 2020-04-09 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-42409-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T C14408T C21575T A23403G C24616T G25563T G26233T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_525664
 2020-04-09 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-43319-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T G3514T C4246T C14408T G17592T A21137G A23403G G25563T C27128T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525677
 2020-04-09 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-46315-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T C15180T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_527017
 2020-04-09 2020-09-03
 Australia hCoV-19/Australia/NSW2437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2827C C3037T C14408T A23403G T27299C GGG28881AAC T29148C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527037
 2020-04-09 2020-09-03
 Australia hCoV-19/Australia/NSW2533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T T11629C C14408T C18877T A23403G G25563T C29167T C29311T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527038
 2020-04-09 2020-09-03
 Australia hCoV-19/Australia/NSW2534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T G4904T G5206T C11941T C14408T A23403G C24138T C25350T G29777T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527711
 2020-04-09 2020-09-04
 United States hCoV-19/USA/MN-CDC-6498/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527737
 2020-04-09 2020-09-04
 United States hCoV-19/USA/WI-CDC-0949/2020
 C27849Y G29711T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_530061
 2020-04-09 2020-09-10
 Spain hCoV-19/Spain/MD-LP58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A605T C3037T C14408T A20268G A23403G C29095T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530216 MT997738
 2020-04-09 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1620/2020
 ATTAAAGGT1- C241T C1059T G1463A C3037T G7557A C8818T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530234
 2020-04-09 2020-09-11
 Australia hCoV-19/Australia/QLD966/2020/P1
 ATTA1- C241T C1059T C3037T G4913T C14408T A23403G G25563T C29545A

EPI_ISL_534775
 2020-04-09 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2841/2020
 C241T C3037T G10201T C14408T C19983T A23403G GGG28881AAC

EPI_ISL_534784
 2020-04-09 2020-09-14
 United Kingdom hCoV-19/England/OXON-B29A8/2020
 T13C C241T C1059T C3037T G3839A A6616G C14408T A23403G G24368T G25563T AAAAA29899-

EPI_ISL_534789
 2020-04-09 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2A69/2020
 C241T C3037T C14408T C18570T T20175C A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_534795
 2020-04-09 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2B2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGT1- C3037T C14408T A23403G G25440K T25519Y C25544M C25583M GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_534804
 2020-04-09 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2CAF/2020
 C241T C3037T C9430T C14408T C16289T A23403G G25429T C27046T AAAAAAAA29896-

EPI_ISL_534864
 2020-04-09 2020-09-14
 United Kingdom hCoV-19/England/OXON-B351C/2020
 A1515G C9223T G11083T T14191C C14805T T17247C C18657T A20280G TTTTGGGTG21981- G26144T CCACGCGGAGT29738-

EPI_ISL_534917
 2020-04-09 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3EE4/2020
 C241T C3037T C14408T T19839C A23403G C26681T GGG28881AAC C29838T A29903-

EPI_ISL_535018
 2020-04-09 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4E01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCAT1- C241T A1635C C3037T C14408T A23403G A23870G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_537477
 2020-04-09 2020-09-16
 United States hCoV-19/USA/CA-UCLA-129/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T G1874T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_537480
 2020-04-09 2020-09-16
 United States hCoV-19/USA/CA-UCLA-133/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T C22450T A23403G G25563T G29645T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_538128
 2020-04-09 2020-09-16
 Spain hCoV-19/Spain/AN-CSIC-98001689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T T2187C C3037T C14408T A20268G A23403G G28904T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538381
 2020-04-09 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2864/2020
 ATTAAAGGTT1- C241T C2416T C3037T C14408T A23403G G23593T G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_538445
 2020-04-09 2020-09-17
 Singapore hCoV-19/Singapore/918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538493
 2020-04-09 2020-09-17
 Singapore hCoV-19/Singapore/959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3261T C6310A C6312A G11083T C13730T C19524T C23929T A27926G C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538494
 2020-04-09 2020-09-17
 Singapore hCoV-19/Singapore/794nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C14183T C19524T C23929T T25345C C26642T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538750
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A96F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18664T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538761
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9F73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538763
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G TTTACTCTCCAA27680- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538767
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9FFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G377T C3037T T12045C C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538771
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9F46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- AAGTCATTT686- ATG1605- C3787T C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538774
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11567G C14408T A23403G C28057Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538782
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9FA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T A4104C C4795T A10505G C10507T C12623T T13678C C14408T A23403G C27046T GGG28881AAC A28910C C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538793
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C10416T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538796
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA40A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26269G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538797
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3737Y C3987A G12067T C14408T T16348C G18907T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538800
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T G29027T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538810
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A94DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8660T G9479T C14408T C16163A A23403G G25563T C26533T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538817
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A95AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T A23403G T28705Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538826
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18657T A20268G T21015C A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538833
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA17C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6040Y G11230K C14408T C18657Y A20268R G21724K C22326Y A23403G G23587S C27442Y C28854Y GGG28881RRS CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538856
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA5E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T10453C C11195T C14408T A23403G GGG28881AAC G29332T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538862
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9264T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538864
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A94ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C364T C8782T G11230T C23536T T28144C G28167A G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538872
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C364T T7001G C8782T G11230T C23536T T28144C G28167A G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538883
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C14408T C15952T C17104T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538887
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538888
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538890
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA2F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C3737T C14408T C14688T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538910
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A98D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T G21724T C22326T A23403G G23587C GGG28881AAC A29532G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538959
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9F55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T A802G C3037T T10453C C11195T C14408T A23403G AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538964
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA77A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G TTTACTCTCCAA27680- GGG28881AAC C29149Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538970
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA7A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A7479G G11083T C14805T T17247C C25572T G26144T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538977
 2020-04-09 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9F64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T G21724T C22326T G23270T A23403G G23587C A28795G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539323
 2020-04-09 2020-09-17
 Netherlands hCoV-19/env/Netherlands/UT-93820-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGC1- G11083T C14408T A23403G G28085T T29128C ATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29538-

EPI_ISL_539794
 2020-04-09 2020-09-20
 United States hCoV-19/USA/WY-WYPHL-20008408/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_541866
 2020-04-09 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr55/2020
 ATTAAA1- A2810G C15324T T21644C C29303T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541867
 2020-04-09 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr56/2020
 A1- A2810G C15324T T21644C C29303T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_542488
 2020-04-09 2020-09-23
 United States hCoV-19/USA/TX-HMH-1003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542505
 2020-04-09 2020-09-23
 United States hCoV-19/USA/TX-HMH-1044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T G11083T C14408T C22477T A23403G G24368T G25563T C28093T C29253T G29315T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542775
 2020-04-09 2020-09-23
 United States hCoV-19/USA/TX-HMH-1528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T C24463T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545640
 2020-04-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18055A G19525T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545645
 2020-04-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G26217T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545860
 2020-04-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G A10691G C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545909
 2020-04-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A G2945T C3177T C7124T C8782T C9561T T18736C C24034T C25433T T26729C C26895T G28077C T28144C C29347T A29700G G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545936
 2020-04-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-962/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T C14408T C18877T A23403G G25563T C25667T C29738T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546747
 2020-04-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C300T T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546753
 2020-04-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546775
 2020-04-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C10537T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546940
 2020-04-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C4672T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547172
 2020-04-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547201
 2020-04-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549017
 2020-04-09 2020-09-28
 Netherlands hCoV-19/env/Netherlands/NH-93822-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAGATGGAGAGCCTTGTCCCTGGTTTCAACGAGAAAACACACGTCCAACTCAGTTTGCCTGTTTTACAGGTTCGCGACGTGC1- C1059T G3025T A23403G C26642T ACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29549-

EPI_ISL_549018
 2020-04-09 2020-09-28
 Netherlands hCoV-19/env/Netherlands/NH-93823-N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C4655T A4870G A13237G C14408T C21207T C26133T GGG28881AAC AGCGTTCTTCGGAATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCATATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGCTGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29209-

EPI_ISL_560778
 2020-04-09 2020-09-29
 United States hCoV-19/USA/MN-MDH-1691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_560786
 2020-04-09 2020-09-29
 United States hCoV-19/USA/MN-MDH-1699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8782T C17747T A17858G C18060T A24694T T28144C G28812T G29755T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_560787
 2020-04-09 2020-09-29
 United States hCoV-19/USA/MN-MDH-1700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G5017T C8782T G14350T C17747T A17858G C18060T A24694T T28144C G28812T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560788
 2020-04-09 2020-09-29
 United States hCoV-19/USA/MN-MDH-1701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1314T C3037T C14408T A23403G G25563T A27821G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_560789
 2020-04-09 2020-09-29
 United States hCoV-19/USA/MN-MDH-1702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T T19527C A23403G G25563T C27964T C28099T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_565968
 2020-04-09 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C442T C3037T T13602C C14408T A23403G C25665Y G28325T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565986
 2020-04-09 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3464T C14408T G21987T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_569597
 2020-04-09 2020-10-02
 France hCoV-19/France/IHU-0573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T C16616T A23403G G24193A G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_569598
 2020-04-09 2020-10-02
 France hCoV-19/France/IHU-0575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T G27014T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569599
 2020-04-09 2020-10-02
 France hCoV-19/France/IHU-0576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C9996T C14408T A23403G G25563T G29747T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

MT477860
 2020-04-09 2020-05-14
 United States SARS-CoV-2/human/USA/AK193/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T G11083T C14408T C16457T G22201A A23403G G25523T G25563T T27869C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT706263
 2020-04-09 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G25981A G28539T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706264
 2020-04-09 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2288A C3037T C14408T A23403G G28001T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836T

MT706265
 2020-04-09 2020-07-03
 United States SARS-CoV-2/human/USA/IL-UW-137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706268
 2020-04-09 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6031T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706281
 2020-04-09 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810665
 2020-04-09 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1208-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810666
 2020-04-09 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1209-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810667
 2020-04-09 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1210-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810676
 2020-04-09 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1225-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810979
 2020-04-09 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0356-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6629T T14145C C14408T C23277T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811194
 2020-04-09 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0489-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G T23449C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811212
 2020-04-09 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0516-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811217
 2020-04-09 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0522-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G4225T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811362
 2020-04-09 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0774-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T G1274T C3037T C14408T C16762T C17491T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811400
 2020-04-09 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0833-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G4225T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811466
 2020-04-09 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1007-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G T23449C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811478
 2020-04-09 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1027-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873067
 2020-04-09 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00203/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873132
 2020-04-09 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00741/2020
 ATTA1- C241T C1059T C1263T C3037T G4112T G7235A T11422C C14408T A23403G G25563T

MT873139
 2020-04-09 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00735/2020
 C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T T26102C

MT873298
 2020-04-09 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00732/2020
 ATTAA1- C241T C1059T C3037T C14408T G16068A C19164T T22078C A23403G G25563T T25707G

MT873299
 2020-04-09 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00204/2020
 C106T C241T G1957A C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T C25916A C27247T

MT873337
 2020-04-09 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00738/2020
 ATTAAA1- G105T C241T C3037T C13252T C14408T C18877T A23403G G25563T

MT873363
 2020-04-09 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00740/2020
 ATTA1- C241T C2416T C3037T T10216C C14408T A23403G G25471T G25563T G26233T

MT873378
 2020-04-09 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00734/2020
 ATTA1- C241T C2416T C3037T A5101T C14408T C17339T A23403G G25563T G26233T T27484C G28460T

MT873392
 2020-04-09 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00736/2020
 ATTAAA1- C241T C3037T C13730T C14408T A23403G G25429T

MT873453
 2020-04-09 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00206/2020
 A1- G105T C241T C3037T C14408T C18877T A23403G G25563T

MT921159
 2020-04-09 2020-08-25
 United States SARS-CoV-2/human/USA/UF-22/2020
 ATTAAAGGTTT1- C241T C3037T T3843C C9943T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

MT937810
 2020-04-09 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C6730T A6866T A6869T T6874C C14408T C14805T A23403G G25563T G29868-

MT955161
 2020-04-09 2020-09-03
 Turkey SARS-CoV-2/human/TUR/Trabzon_1708-2020/2020
 C241T C1059T C3037T A6018G C14408T A16998T A23403G G25563T C25721T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

MT967967
 2020-04-09 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6498/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT968051
 2020-04-09 2020-09-04
 United States SARS-CoV-2/human/USA/WI-CDC-0949/2020
 C27849Y G29711T AAAAAAAAAAAAAAAAAAAAA29883-

NMDC60013143
 2020-04-09 2020-06-01
 China hCoV-19/Guangzhou/ID154/2020
 A1- T3G C241T C3037T C14408T C15324T C19524T A23403G T29851A G29864A TG29867YA

NMDC60013145
 2020-04-09 2020-06-01
 China hCoV-19/Guangzhou/ID159/2020
 ATTAAAGGTTTATA1- C16T C241T C3037T C14408T C15324T C19524T A23403G G29868A

NMDC60013151
 2020-04-09 2020-06-01
 China hCoV-19/Guangzhou/ID160/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T C15324T C19524T A23403G G29868A

NMDC60013172
 2020-04-09 2020-06-01
 China hCoV-19/Guangzhou/ID141/2020
 C241T C3037T C14408T C15324T A23403G

NMDC60013188
 2020-04-09 2020-06-01
 China hCoV-19/Guangzhou/ID157/2020
 C241T C3037T T12436A C14408T C15324T A23403G G29868A

NMDC60013190
 2020-04-09 2020-06-01
 China hCoV-19/Guangzhou/ID133/2020
 TTAAAGGTT2- C241T C3037T C14408T C15324T A23403G G29868C

NMDC60013191
 2020-04-09 2020-06-01
 China hCoV-19/Guangzhou/ID155/2020
 C241T C3037T T12436A C14408T C15324T A23403G G29868A

NMDC60013193
 2020-04-09 2020-06-01
 China hCoV-19/Guangzhou/ID143/2020
 C241T C3037T C14408T C15324T A23403G G29868A

EPI_ISL_427439
 2020-04-10 2020-04-18
 United States hCoV-19/USA/WI-UW-132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A C29269T G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427449
 2020-04-10 2020-04-18
 United States hCoV-19/USA/WI-UW-142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427452
 2020-04-10 2020-04-18
 United States hCoV-19/USA/WI-UW-145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T G19254T A23403G A23947G G28539T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427454
 2020-04-10 2020-04-18
 United States hCoV-19/USA/WI-UW-147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430076
 2020-04-10 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4969S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430077
 2020-04-10 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4970S/2020
 C241T C3037T G8287T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430078
 2020-04-10 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4972S/2020
 C241T C3037T C3140T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430079
 2020-04-10 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4980S/2020
 C241T C3037T C3140T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430080
 2020-04-10 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4983S/2020
 C241T C3037T C3140T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430081
 2020-04-10 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4984S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430082
 2020-04-10 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4985S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430083
 2020-04-10 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII4988S/2020
 C241T G675T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430085
 2020-04-10 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5029S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430086
 2020-04-10 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5033S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430087
 2020-04-10 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5047S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430090
 2020-04-10 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5244S/2020
 C241T C3037T C11455T C14408T A20268G A23403G

EPI_ISL_430091
 2020-04-10 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5247S/2020
 C241T G922A C1059T C1684T C3037T C14408T C19718T A20755C A23403G G25563T

EPI_ISL_430323
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NY-NYUMC296/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430324
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NY-NYUMC297/2020
 C241T C1059T C3037T G4925T C11916T C14408T C18998T G21372T A23403G G25563T G25776T G27676C G29540A

EPI_ISL_430396
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NY-NYUMC369/2020
 C241T C1059T C3037T A3889G C6762T C14408T A23403G G25563T C28791T

EPI_ISL_430398
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NY-NYUMC371/2020
 C241T C1059T C3037T C14408T A21315G A23403G G25563T

EPI_ISL_430399
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NY-NYUMC372/2020
 C241T ATG518- C1059T C3037T G10642T C12400T C14408T A23403G G25563T

EPI_ISL_430400
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NY-NYUMC373/2020
 C241T C1059T C3037T C11916T C14408T C21575T A23403G G25563T

EPI_ISL_430401
 2020-04-10 2020-04-26
 United States hCoV-19/USA/CT-NYUMC374/2020
 C203T C241T C1059T C3037T A7040G A11781G C14408T G16381A T18371A A23403G G25563T

EPI_ISL_430402
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NY-NYUMC375/2020
 C241T C1059T C3037T C7945T C14408T A23403G G25563T C25936T

EPI_ISL_430403
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NJ-NYUMC376/2020
 C241T C1059T C3037T C14408T C16616T G20125A A23403G G25563T

EPI_ISL_430404
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NY-NYUMC377/2020
 C241T C1059T G1782A C3037T C9142A C9962T C11916T C14408T C18998T A23403G G25563T T26084C G29540A

EPI_ISL_430405
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NJ-NYUMC378/2020
 C241T C3037T G11083T C14408T C18877T A23403G G25563T

EPI_ISL_430406
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NY-NYUMC379/2020
 C241T C1059T C3037T A3559G A9737G C11916T A13711G C14408T C18998T G22487C G23224T A23403G G25563T C29274T G29540A

EPI_ISL_430407
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NY-NYUMC380/2020
 C241T C874A C1059T C1884T C3037T C14408T A23403G G23501T C24133T G25563T

EPI_ISL_430409
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NY-NYUMC382/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29402T G29540A

EPI_ISL_430410
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NY-NYUMC383/2020
 C241T C3037T C14408T A20268G A23403G G24959T

EPI_ISL_430412
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NY-NYUMC385/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430414
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NY-NYUMC387/2020
 C241T C1059T C3037T C10851T G11417T C14408T C18175T A23403G G25563T

EPI_ISL_430415
 2020-04-10 2020-04-26
 United States hCoV-19/USA/NY-NYUMC388/2020
 C241T C1059T C3037T C11960T C14408T A23403G G25563T

EPI_ISL_430674 MT451786
 2020-04-10 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1178/2020
 A31R C241T T2327Y C3037T G8102T G14383T C14408T G14831K G15444K C20270Y T22441Y A23403G GGG28881AAC

EPI_ISL_433435
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1324/2020
 C241T C313T C3037T C14408T C19524T A23403G C24863T G25135T C27046T G28086T GGG28881AAC

EPI_ISL_433436
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1339/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433437
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1340/2020
 C241T C3037T T14079C C14408T A23403G G25690T GGG28881AAC

EPI_ISL_433440
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1411/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_433893
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AF04/2020
 C1457T A2480G C2558T C2723T G11083T C14805T A20742G C20759T G20925T G26144T

EPI_ISL_433894
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AF13/2020
 C241T C3037T C14408T C19366T A23403G GGG28881AAC

EPI_ISL_433895
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AF22/2020
 C241T C3037T C5184T C5506T C14408T C16887T A23403G GGG28881AAC C29095T C29555T C29784T

EPI_ISL_433896
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AF31/2020
 C1314T G11083T C11575T C14805T T17247C G26144T T28852C

EPI_ISL_433897
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AF40/2020
 C241T C3037T C12076T C14408T C19488T A23403G GGG28881AAC G29701T

EPI_ISL_433898
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AF5F/2020
 C241T C3037T C14408T A23403G G27281T GGG28881AAC

EPI_ISL_433899
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AF6E/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433900
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AF7D/2020
 C635T G11083T C14805T C17010T T17247C G26144T

EPI_ISL_433904
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AFF5/2020
 C241T C3037T C14408T C16289T C17678T A23403G G25429T

EPI_ISL_433905
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B000/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433918
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B0F1/2020
 C241T C3037T C13476T C14408T G20679T A23403G C23936A GGG28881AAC

EPI_ISL_433926
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B194/2020
 C241T C3037T C14408T C16289T A23403G C23997T G25429T

EPI_ISL_433936
 2020-04-10 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B2A0/2020
 C241T C1059T C3037T A6616G C14408T A23403G G24368T G25563T

EPI_ISL_434592 MT418881
 2020-04-10 2020-04-30
 United States SARS-CoV-2/human/USA/VA-DCLS-0098/2020
 ATTA1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G C29870A

EPI_ISL_434594 MT418883
 2020-04-10 2020-04-30
 United States SARS-CoV-2/human/USA/VA-DCLS-0100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C7564T C8782T A13712G C17747T A17858G C18060T T28144C C29870A

EPI_ISL_434595 MT418884
 2020-04-10 2020-04-30
 United States SARS-CoV-2/human/USA/VA-DCLS-0101/2020
 ATTAAAGGTT1- C7564T C8782T A13712G C17747T A17858G C18060T T28144C C29870A

EPI_ISL_434608 MT429184
 2020-04-10 2020-04-30
 United States SARS-CoV-2/human/USA/WI-UW-262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436447
 2020-04-10 2020-05-06
 India hCoV-19/India/NCDC-4055/2020
 C6312A T8022K G11083T C13730T G17592K C17788Y C22120S T22515Y C23929T C25037M C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437374
 2020-04-10 2020-05-08
 United States hCoV-19/USA/MN-MDH-470/2020
 ATTA1- T490A C3177T C8782T C10279T C15960T G17679A T18736C G19684T G19723T C24034T T26729C C27635T G28077C T28144C A28874G A29700G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437767 MT482114
 2020-04-10 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10319T A12286G C12729T C13665T C14408T A23403G G25563T C27964T G29868A C29870A

EPI_ISL_438875
 2020-04-10 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2100T C12213T C25511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_441898
 2020-04-10 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C095C/2020
 C241T C3037T C4795T C14408T G17242A A23403G G25429T C25916T G27327A

EPI_ISL_441916
 2020-04-10 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C1C8F/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_442358
 2020-04-10 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CA345/2020
 C241T C3037T C14408T G18803T C21614T A23403G

EPI_ISL_442370
 2020-04-10 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CAD1A/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_442387
 2020-04-10 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CB61E/2020
 C241T C3037T C14408T C16101T A18616G A23403G GGG28881AAC

EPI_ISL_442407
 2020-04-10 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CC0D3/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_442413
 2020-04-10 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CC6D1/2020
 A2480G C2558T C2862T A6542G C9724T G11083T C12100T C14805T C20790T C25904T G26144T

EPI_ISL_442438
 2020-04-10 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CD9C8/2020
 C241T C2455T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_442468
 2020-04-10 2020-05-12
 United Kingdom hCoV-19/England/SHEF-D01F7/2020
 ATG1605- C6016T C6696T G10697A C11001T C12053T C27005T

EPI_ISL_442562
 2020-04-10 2020-05-12
 United Kingdom hCoV-19/England/CAMB-806AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6385T C14408T A23403G G25912T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_442886
 2020-04-10 2020-05-12
 United Kingdom hCoV-19/England/CAMB-80C8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11298G C11868T C14408T C17403T A20268G A23403G C28854T

EPI_ISL_442996
 2020-04-10 2020-05-12
 United Kingdom hCoV-19/England/CAMB-80DD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1812T A2480G C2558T G11083T C14805T G26144T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_443038
 2020-04-10 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8124D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2775G C3037T G4255T C13568T C14408T A20355G C21575Y A23403G A26530G G29321K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_444159
 2020-04-10 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4964/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444160
 2020-04-10 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4982/2020
 C241T C3037T C14408T G22225T A23403G GGG28881AAC

EPI_ISL_444161
 2020-04-10 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4991/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_444162
 2020-04-10 2020-05-13
 United Kingdom hCoV-19/England/LOND-D49A0/2020
 C241T C3037T C14408T C22419T A23403G GGG28881AAC

EPI_ISL_444163
 2020-04-10 2020-05-13
 United Kingdom hCoV-19/England/LOND-D49BF/2020
 C241T C3037T C14408T A23403G C26534T GGG28881AAC

EPI_ISL_444164
 2020-04-10 2020-05-13
 United Kingdom hCoV-19/England/LOND-D49CE/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_444165
 2020-04-10 2020-05-13
 United Kingdom hCoV-19/England/LOND-D49DD/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_444166
 2020-04-10 2020-05-13
 United Kingdom hCoV-19/England/LOND-D49EC/2020
 C241T C3037T C14408T G21204T C21998T A23403G C28609T GGG28881AAC

EPI_ISL_444167
 2020-04-10 2020-05-13
 United Kingdom hCoV-19/England/LOND-D49FB/2020
 C241T C313T C3037T A4414G G10105T C14408T A23403G C25904T GGG28881AAC

EPI_ISL_444168
 2020-04-10 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4A07/2020
 C241T G269A C3037T C14408T C21621T A23403G GGG28881AAC

EPI_ISL_444169
 2020-04-10 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4A16/2020
 C241T C313T C3037T C6347T C14408T A23403G GGG28881AAC

EPI_ISL_444170
 2020-04-10 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4A25/2020
 C241T C3037T C14408T G17427T G21724T G23015A A23403G

EPI_ISL_444171
 2020-04-10 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4A34/2020
 C241T C3037T C14408T C20692T A23403G GGG28881AAC

EPI_ISL_444770
 2020-04-10 2020-05-14
 United States hCoV-19/USA/NY-NYUMC653/2020
 C241T C1059T C3037T C11339T C14408T A23403G G25563T

EPI_ISL_444771
 2020-04-10 2020-05-14
 United States hCoV-19/USA/NY-NYUMC654/2020
 C241T C1059T C1387T C3037T C14408T A20755C G22638A A23403G G25563T

EPI_ISL_444772
 2020-04-10 2020-05-14
 United States hCoV-19/USA/NY-NYUMC655/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C25613T G29239A G29540A

EPI_ISL_444975
 2020-04-10 2020-05-14
 Spain hCoV-19/Spain/Barcelona_VH1407/2020
 C241T C3037T A5176G C6354T C14408T A20268G A23403G G28883A G29688C G29734C

EPI_ISL_445720
 2020-04-10 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B4E5/2020
 C241T C1059T C3037T C6145Y C10376T C14408T G18583T A23403G G23868K G24368T G25563T G29773T

EPI_ISL_445724
 2020-04-10 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B53D/2020
 ATTAAAGGTTT1- C241T C3037T C14230T C14408T A23403G

EPI_ISL_445725
 2020-04-10 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B54C/2020
 ATTAAAGGTTTATACC1- G1148T A1515G C9223T G11083T C14805T T17247C G26144T

EPI_ISL_445726
 2020-04-10 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B55B/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_445727
 2020-04-10 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B579/2020
 AT1- C241T C3037T C14408T A23403G G24077T G29747T

EPI_ISL_445737
 2020-04-10 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B62B/2020
 ATTAAAGGT1- C241T C3037T C14408T A19338R A23403G GGG28881AAC

EPI_ISL_445833
 2020-04-10 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2BCDE/2020
 ATTAAAGG1- C241T C1059T C3037T C10376T C14408T G18583T A23403G G24368T G25563T G29773T

EPI_ISL_445846
 2020-04-10 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2BDAE/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_445856
 2020-04-10 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2BE41/2020
 A1- C241T C3037T C14408T T16425A A23403G C25511T

EPI_ISL_445865
 2020-04-10 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2BED8/2020
 ATTAAAGGTTTA1- A2480G C2558T G11083T A12529G C14805T G26144T ACTCGCTACTTGTGAGCT27426- G28883A G29414A

EPI_ISL_446320
 2020-04-10 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-30AEB/2020
 ATT1- C241T C3037T C7945T G10870T G11083T C14408T C23243Y A23403G GGG28881AAC

EPI_ISL_446335
 2020-04-10 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-30BE8/2020
 ATTA1- C241T C3037T C14408T A23403G G28048C GGG28881AAC

EPI_ISL_447579
 2020-04-10 2020-05-17
 India hCoV-19/India/CCMB_K128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- AG55CT T6197C C6312A G11083T C13730T C14666T C18511T C19524T C23929T C28311T C29774T

EPI_ISL_448144
 2020-04-10 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC G29001A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_448145
 2020-04-10 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2110/2020
 C241T C344T C3037T C14408T C16289T A23403G T25222C G25429T

EPI_ISL_449871 MT641599
 2020-04-10 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S701/2020
 C241T C1059T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_449872 MT641604
 2020-04-10 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S702/2020
 C241T C1059T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_449873 MT641607
 2020-04-10 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S703/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_449894 MT641497
 2020-04-10 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S724/2020
 C241T C1059T C3037T A3421G G3955T G7560A C14408T G19999T G21452T A23403G G25563T

EPI_ISL_449895 MT641634
 2020-04-10 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S725/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_449897 MT641526
 2020-04-10 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S727/2020
 T283C C8782T G11083T A16064G C17747T A17858G C18060T T28144C

EPI_ISL_449898 MT641532
 2020-04-10 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S728/2020
 C241T C1059T C3037T C12880T C14408T A23403G G25563T C26013T G29553A

EPI_ISL_450737
 2020-04-10 2020-05-22
 Belgium hCoV-19/Belgium/ITM_C413/2020
 C241T C3037T G4255T C14408T A16687G A23403G A26530G C29095T

EPI_ISL_451144
 2020-04-10 2020-05-23
 Australia hCoV-19/Australia/SAP146/2020
 C241T G1589A C3037T C14408T A23403G G25429T G29474T

EPI_ISL_452150
 2020-04-10 2020-05-26
 Belgium hCoV-19/Belgium/20A47/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C4002T G10097A C13536T C14408T A16166G A23403G C23731T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_452815 MT558666
 2020-04-10 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0240/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T TG29867CA

EPI_ISL_454407
 2020-04-10 2020-05-28
 United States hCoV-19/USA/PA-MGEL149/2020
 C241T C1059T C3037T C14408T G18781T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454563
 2020-04-10 2020-05-28
 India hCoV-19/India/NIV-QA-707/2020
 C241T C313T C875T T2236C C3037T A4268G C4893A C5700A C14408T G17944T A23403G T25098A GGG28881AAC

EPI_ISL_454654 MT534304
 2020-04-10 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1234/2020
 ATTAAAGGTTT1- C7604Y T10129Y T15771Y G25563R C25692T T29360K

EPI_ISL_455242
 2020-04-10 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455244
 2020-04-10 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455245
 2020-04-10 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455307
 2020-04-10 2020-05-29
 Netherlands hCoV-19/Netherlands/ZuidHolland_118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455362
 2020-04-10 2020-05-29
 Nigeria hCoV-19/Nigeria/KW017-CV24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C11224T C14408T C18877T A23403G G25563T G29742T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455708
 2020-04-10 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_4864/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC C28905T

EPI_ISL_455712
 2020-04-10 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_4875/2020
 C241T C3037T C11824T C14408T C21057T A23403G GGG28881AAC

EPI_ISL_455718
 2020-04-10 2020-06-01
 Vietnam hCoV-19/Vietnam/VNHN_4958/2020
 C241T C3037T C14408T T19839C A23403G TTCTTA27695- GGG28881AAC C28905T

EPI_ISL_456092
 2020-04-10 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26730T T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456344
 2020-04-10 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2045/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A C29144T

EPI_ISL_456366
 2020-04-10 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2079/2020
 C241T G410T C3037T C14408T A23403G G24077T

EPI_ISL_456374
 2020-04-10 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2093/2020
 C241T C3037T C4683T C14408T A23403G G24077T

EPI_ISL_457060
 2020-04-10 2020-06-02
 United Kingdom hCoV-19/England/EXET-135441/2020
 C241T C3037T C5005T C10156T C14408T A23403G GGG28881AAC

EPI_ISL_457065
 2020-04-10 2020-06-02
 United Kingdom hCoV-19/England/EXET-13549C/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC C29642T

EPI_ISL_457068
 2020-04-10 2020-06-02
 United Kingdom hCoV-19/England/EXET-135502/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC C29642T

EPI_ISL_457069
 2020-04-10 2020-06-02
 United Kingdom hCoV-19/England/EXET-135511/2020
 C241T C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457105
 2020-04-10 2020-06-02
 United Kingdom hCoV-19/England/EXET-135836/2020
 C241T C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457123
 2020-04-10 2020-06-02
 United Kingdom hCoV-19/England/EXET-1359D9/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC

EPI_ISL_457129
 2020-04-10 2020-06-02
 United Kingdom hCoV-19/England/EXET-135A5E/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC

EPI_ISL_457149
 2020-04-10 2020-06-02
 United Kingdom hCoV-19/England/EXET-135C3A/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457153
 2020-04-10 2020-06-02
 United Kingdom hCoV-19/England/EXET-135CA3/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457179
 2020-04-10 2020-06-02
 United Kingdom hCoV-19/England/EXET-135EDA/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC

EPI_ISL_457224
 2020-04-10 2020-06-02
 United Kingdom hCoV-19/England/EXET-1363CB/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457225
 2020-04-10 2020-06-02
 United Kingdom hCoV-19/England/EXET-1363DA/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_458265
 2020-04-10 2020-06-04
 United States hCoV-19/USA/CA-SR0386/2020
 C241T C1059T C1887T C3037T C11704T C14408T A23403G G25563T

EPI_ISL_458267
 2020-04-10 2020-06-04
 United States hCoV-19/USA/CA-SR0388/2020
 C241T C936T C3037T T5158G C14408T A23403G C25614T A26759G

EPI_ISL_458976
 2020-04-10 2020-06-04
 United Kingdom hCoV-19/England/BRIS-126416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4993T A6944G C13987T T20277C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459069
 2020-04-10 2020-06-04
 United Kingdom hCoV-19/England/BRIS-1265AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T9046C G11083T C11779A G13627T C14805T C15540T G26144T C27688T A28338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459090
 2020-04-10 2020-06-04
 United Kingdom hCoV-19/England/BRIS-126A9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T T5840C C14408T T15501A G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460650
 2020-04-10 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4113T C6555T C14408T G18281A A20755C A23403G G25563T G25784T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460730
 2020-04-10 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G GG24815TT GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460789
 2020-04-10 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4847A C11704T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460837
 2020-04-10 2020-06-06
 Netherlands hCoV-19/Netherlands/Flevoland_14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1594T C3037T C11109T G14241T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460932
 2020-04-10 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T G18907T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460933
 2020-04-10 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3426T G12550A C14408T A20268G C20740A C21952T A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460937
 2020-04-10 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T C10408T G11596T C14408T T16891C C18555T A23403G A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461167
 2020-04-10 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635T C3037T C14408T T21189C A23403G A24862G G25455T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_463470 MT642419
 2020-04-10 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S980/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463473 MT642395
 2020-04-10 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S983/2020
 ATTAAAGGTTT1- C241T A761G C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463997
 2020-04-10 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0067/2020
 C241T C1059T C3037T C6500T C14408T A23403G G25563T G28368A

EPI_ISL_464026
 2020-04-10 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0039/2020
 C241T C1059T C3037T C6500T C14408T A23403G G25563T G28368A

EPI_ISL_464040
 2020-04-10 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0080/2020
 C241T C1059T C3037T C6500T C14408T A23403G G25563T G28368A

EPI_ISL_464050
 2020-04-10 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0054/2020
 C106T C241T C1059T C3037T C6500T C14408T A23403G G25563T G28368A

EPI_ISL_464059
 2020-04-10 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0056/2020
 C241T C1059T C3037T C6500T C14408T A23403G G25563T G28368A

EPI_ISL_465224
 2020-04-10 2020-06-11
 United Kingdom hCoV-19/England/20169030004/2020
 C241T A648R C2388Y C3037T C8683Y G11230K T11646Y T14313Y C14408T C18657Y A20268G G21724K C22326Y G22992K A23403G G23587S C27442Y C28854Y GGG28881RRS

EPI_ISL_465287
 2020-04-10 2020-06-11
 United Kingdom hCoV-19/England/20170036904/2020
 C241T C3037T C3373A G3692T C11195T G12521A C14408T C15216T A23403G GGG28881AAC

EPI_ISL_466613
 2020-04-10 2020-06-11
 United Kingdom hCoV-19/England/20168035204/2020
 C241T C3037T G10097A A10564G C14408T C16349T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_468364 MT628101
 2020-04-10 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G8525A C16466Y C16880Y A17482G T20175K C20480S T21126C A21163R G21168K G21190R C28887T

EPI_ISL_468591
 2020-04-10 2020-06-16
 Croatia hCoV-19/Croatia/LG-S2new/2020
 C241T C3037T C10078T C14408T A23403G C27367T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_468910
 2020-04-10 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2086/2020
 C241T C3037T T5674C C14408T A23403G T24071C GGG28881AAC

EPI_ISL_468927
 2020-04-10 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2089/2020
 C241T C3037T C14408T G21002R A23403G GGG28881AAC

EPI_ISL_468934
 2020-04-10 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2092/2020
 C241T C1959T C3037T C13860T C14408T A23403G GGG28881AAC

EPI_ISL_468949
 2020-04-10 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2084/2020
 C241T C3037T G6359A C14408T A19954G A20268G A23403G G25218T G26746T G29734C

EPI_ISL_469133
 2020-04-10 2020-06-17
 Singapore hCoV-19/Singapore/384/2020
 C6310A C6312A G11083T A11252R C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_470903
 2020-04-10 2020-06-19
 Russia hCoV-19/Russia/Moscow_PMVL-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A19805C A23403G T23689C GGG28881AAC AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_470904
 2020-04-10 2020-06-19
 Russia hCoV-19/Russia/Moscow_PMVL-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2892T C3037T C4206T C14408T C22450T A23403G G25135T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_471188
 2020-04-10 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471245
 2020-04-10 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T T6069C A10918C C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471548
 2020-04-10 2020-06-22
 Brazil hCoV-19/Brazil/SP-606/2020
 C241T G1855T C3037T C14408T A23403G G25088T GGG28881AAC C29253T GGA29861TTT AAAAAAAAAAAAA29891-

EPI_ISL_471551
 2020-04-10 2020-06-22
 Brazil hCoV-19/Brazil/SP-545/2020
 C241T C3037T C14408T C15017Y G22899K A23403G G25595T T27299C GGG28881AAC T29148C AAAAAAAAAAAAA29891-

EPI_ISL_473512
 2020-04-10 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2264/2020
 G11083T A14601G C14805T T17247C G26144T

EPI_ISL_473845
 2020-04-10 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5724/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_473846
 2020-04-10 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5729/2020
 C241T C3037T C10798A C13862T C14408T C23327T A23403G C27883T C28836T

EPI_ISL_474323
 2020-04-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-3126A/2020
 ATT1- C241T C3037T C6258T C14408T C18877T A23403G G25563T C28057T

EPI_ISL_477857
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C16726Y T18736C G19684T C24034T T26729C C26781T C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477859
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478840
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFF8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2523T C3037T C5826T C6723T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_478842
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFFCA/2020
 C241T C3037T C6723T G9130T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_478856
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/England/OXON-B010C/2020
 C241T C3037T C14408T C18508T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_478870
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0281/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_478878
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0403/2020
 ATTAAAGGTTTATACCTTCC1- C21M C241T C1884T C3037T C6723T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_478914
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0843/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_478927
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/England/OXON-B09C8/2020
 C241T C3037T C14408T A23403G GGG28881AAC A29903-

EPI_ISL_478928
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0A01/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C6723T C14408T A23403G T24152C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_478980
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0F5D/2020
 AT1- C241T C1059T C3037T C6936T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_478984
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0FB7/2020
 C241T C3037T C14408T T18831C A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_479134
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/England/OXON-B229E/2020
 C241T G2144A C3037T C14408T C19170T G19509A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_479152
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/England/OXON-B250E/2020
 C241T C3037T G10870T C14408T A22771T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_479158
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/England/OXON-B25C2/2020
 C241T T1537C C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC AAAAAAAAA29895-

EPI_ISL_479173
 2020-04-10 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2744/2020
 A2480G C2558T A5368G G11083T C14805T T22261C G26144T A28911T

EPI_ISL_481074
 2020-04-10 2020-07-02
 Spain hCoV-19/Spain/Madrid_COV004940/2020
 C241T C3037T C10015T C14408T A20268G T22119C A23403G

EPI_ISL_481514
 2020-04-10 2020-07-03
 Finland hCoV-19/Finland/10A10S14/2020
 C241T C1059T C3037T C6695T C14408T A23403G G24368T G25563T G27602A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481515
 2020-04-10 2020-07-03
 Finland hCoV-19/Finland/10A11S14/2020
 C241T C1059T C3037T C14408T C16178T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481516
 2020-04-10 2020-07-03
 Finland hCoV-19/Finland/10A15S14/2020
 C241T C589T C1059T A2622G C3037T C9565T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481517
 2020-04-10 2020-07-03
 Finland hCoV-19/Finland/10A16S14/2020
 C241T C1059T C1568T C3037T T8158C C14408T A23403G G24368T G25563T A29183G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481518
 2020-04-10 2020-07-03
 Finland hCoV-19/Finland/10A17S14/2020
 C241T C1059T C3037T C14408T T20445A A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481519
 2020-04-10 2020-07-03
 Finland hCoV-19/Finland/10A1S14/2020
 C241T C1059T C3037T C14408T A14856G A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481520
 2020-04-10 2020-07-03
 Finland hCoV-19/Finland/10A20S10/2020
 C241T GTTATG515- C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481522
 2020-04-10 2020-07-03
 Finland hCoV-19/Finland/10A22S14/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481523
 2020-04-10 2020-07-03
 Finland hCoV-19/Finland/10A30S10/2020
 C241T C1059T C3037T C14408T G18315A A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481524
 2020-04-10 2020-07-03
 Finland hCoV-19/Finland/10A30S14/2020
 C241T C1059T C3037T G13094A C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481526
 2020-04-10 2020-07-03
 Finland hCoV-19/Finland/10A53S14/2020
 C241T C3037T C6401T C14408T A23403G T27698A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481527
 2020-04-10 2020-07-03
 Finland hCoV-19/Finland/10A54S10/2020
 C241T C1059T C3037T C4230T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481528
 2020-04-10 2020-07-03
 Finland hCoV-19/Finland/10A57S10/2020
 C241T C643T C1059T C3037T C4230T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481529
 2020-04-10 2020-07-03
 Finland hCoV-19/Finland/10A63S14/2020
 C241T C3037T C6401T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481530
 2020-04-10 2020-07-03
 Finland hCoV-19/Finland/10A66S14/2020
 C241T C1059T C3037T T5767C C11919T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481755
 2020-04-10 2020-07-03
 Canada hCoV-19/Canada/NB_270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T G4904T G5206T A6325G C14408T A23403G C24138T C25350T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_481756
 2020-04-10 2020-07-03
 Canada hCoV-19/Canada/NB_271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A G1709A C3177T C3717T C8782T C10755T T13180C C16084T T18736C C24034T T26729C C27972T G28077C T28144C A29700G ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482013
 2020-04-10 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12E205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C14408T A23403G G25563T G28808T G29705T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_482334
 2020-04-10 2020-07-03
 United States hCoV-19/USA/OR-PROV-054/2020
 C241T C1059T C3037T T3312C C14408T A23403G G25563T

EPI_ISL_482335
 2020-04-10 2020-07-03
 United States hCoV-19/USA/OR-PROV-055/2020
 G11083T C14805T G26144T C29614T

EPI_ISL_482336
 2020-04-10 2020-07-03
 United States hCoV-19/USA/OR-PROV-056/2020
 A4236G G11083T C14805T C22986T T25655C G26144T

EPI_ISL_483161
 2020-04-10 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0470-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_483168
 2020-04-10 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0479-SAN/2020
 A2240G C8782T G13007A C17747T A17858G C18060T A24694T C25207T T28144C

EPI_ISL_483202
 2020-04-10 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0525-IPL/2020
 ATTAAAGGTTTA1- C241T C3037T C10156T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483339
 2020-04-10 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0760-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1911T C3037T C14408T C15810T A20268G A23403G T24076C C28854T

EPI_ISL_483347
 2020-04-10 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0771-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10156T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483348
 2020-04-10 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0772-SAN/2020
 ATTAA1- A2240G C8782T G13007A C17747T A17858G C18060T A24694T C25207T T28144C

EPI_ISL_483712
 2020-04-10 2020-07-08
 Israel hCoV-19/Israel/n14292/2020
 C241T C1059T C3037T C11916T C14408T C18998T A22390G A23403G G25563T G29540A

EPI_ISL_484551
 2020-04-10 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C2445T C3037T G11083T C11479T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484552
 2020-04-10 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C27874T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484555
 2020-04-10 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484557
 2020-04-10 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C3653T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484561
 2020-04-10 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C3817T G5329A C6781T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484562
 2020-04-10 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C8626T C12710T C27247T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484563
 2020-04-10 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C26781T C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484564
 2020-04-10 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C5392T C6525T C27874T G29587A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485290
 2020-04-10 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7819T C9857T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485294
 2020-04-10 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485296
 2020-04-10 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C14408T G14534A C16616T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485297
 2020-04-10 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A7706G C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485316
 2020-04-10 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C14408T A23403G G25563T C27964T C29741T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485319
 2020-04-10 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3817T G4399T G12988T C14408T C19875A A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485321
 2020-04-10 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26791695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C14408T G14534A C16616T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485902
 2020-04-10 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C100T C241T C1059T C3037T C3777T ATT6684- G11534A C14408T C16887T A23403G G25563T C27964T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_485903
 2020-04-10 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T A28254- CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_485904
 2020-04-10 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C14408T G14534A C16616T A23403G G25563T TTTTAGCC27793- C27964T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_487453
 2020-04-10 2020-07-14
 Mali hCoV-19/Mali/M002667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C958T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487454
 2020-04-10 2020-07-14
 Mali hCoV-19/Mali/M002672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1968T C8782T C11747T G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487455
 2020-04-10 2020-07-14
 Mali hCoV-19/Mali/M002673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T C14408T C15324T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487456
 2020-04-10 2020-07-14
 Mali hCoV-19/Mali/M002675/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T G11417T C16658T T28144C G28878A G29742A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_487655
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487686
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487697
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21600T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487702
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21622T A23403G A25448C C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487725
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T G19419A A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487726
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487730
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G G27827R C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487742
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21622T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487757
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487759
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C10418T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487771
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G24821T G28460T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487782
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G T28245C C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487806
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487825
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487826
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9223T C14408T T22213C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487829
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487834
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G A26009G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487852
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T519Y C3037T C9223T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487867
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T C10582T C14408T A23403G AG25562GT C28310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487888
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487889
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487912
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A11730G C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487915
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C16833T T19533C A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487935
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G A26009G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487936
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A20288R C21622T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487967
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487988
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21622T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487999
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T C18261T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488331
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- TAAC137- C241T C3037T C6720T A8020M C14408T A23403G G25489T G28027S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488363
 2020-04-10 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490014
 2020-04-10 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC10195/2020
 ATTAAAGGTTTAT1- C6312A G11083T C13730T C19524T C23929T C28311T -AA29874TTTAGTGTTTTCC AA29879GC AA29882CT A29885C A29887T A29889C AAAA29891CTGG AA29896TT A29899T -29901TTGCCACAATCCTTTG A29903G

EPI_ISL_490015
 2020-04-10 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC12897/2020
 A1G TA3AC A6C TT10GG A14G T17C -19GGCAGTCAGAGGCGATGAAG C241T C3037T C14408T C15324T G16089A C21621T A23403G T24175C G25621T T26232C G28202A AA29882TC AAA29885CCG AAA29889GGCCACGCGG AA29893GT AA29896CG AAA29899TCG A29903G

EPI_ISL_490016
 2020-04-10 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC12286/2020
 ATTAAAGGTTTATA1- C2508A C6310A C6312A G11083T C13730T G19252T C19524T C23929T C28311T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866GC

EPI_ISL_490047
 2020-04-10 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC13946/2020
 ATTAAAGGTTTATA1- G1748A C6312A G11083T C12242T C13730T C19524T C23929T A25296G C28311T G29861C AG29863GC T29867G AC29869TT AAA29875CTC AA29881TG -AAA29885TTGACGGGGGCCCGCACAAGCGGTGGAGCATGGGGTTTAATTCGTGC AAAA29891CGCG A29897G -AA29900CCTTACCTGGTCTTGG

EPI_ISL_490071
 2020-04-10 2020-07-15
 Singapore hCoV-19/Singapore/621/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T A29707G AAAAAAAAAAAA29892-

EPI_ISL_490074
 2020-04-10 2020-07-15
 Singapore hCoV-19/Singapore/624/2020
 C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_490662
 2020-04-10 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR2096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T18736C G19684T C24034T T26729C C26781T C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490664
 2020-04-10 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR2101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490670
 2020-04-10 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR2141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491149
 2020-04-10 2020-07-16
 Oman hCoV-19/Oman/14233/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25C C241T C2836T C3037T C14408T C16726T C18877T A20458G C22444T T22744C A23403G G25563T C26735T C28854T G29513T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_491150
 2020-04-10 2020-07-16
 Oman hCoV-19/Oman/14251/2020
 ATTAAAGGTTTATACCTTCCCAG1- GT24CC C241T C2836T C3037T C14408T C16726T C18877T C22444T A23403G G25563T C26735T C28854T G29513T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_491156
 2020-04-10 2020-07-16
 Oman hCoV-19/Oman/14235/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T C14408T C16726T C18877T A20458G C22444T A23403G G25563T C26735T C28854T G29513T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491157
 2020-04-10 2020-07-16
 Oman hCoV-19/Oman/14264/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2836T C3037T C10507T C14408T C16726T C18877T A20458G C22444T A23403G G25563T C26735T C28854T G29513T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491160
 2020-04-10 2020-07-16
 Oman hCoV-19/Oman/14237/2020
 ATTAAAGGTTTATACCTTCCCA1- GT24TC C241T C2836T C3037T C14408T C16726T C18877T C22444T A23403G G25563T C26735T C28854T G29513T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_491529
 2020-04-10 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491596
 2020-04-10 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T G10523C T14079C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491600
 2020-04-10 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G25429T C29284Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491644
 2020-04-10 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491648
 2020-04-10 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491699
 2020-04-10 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G27021C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492513
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FE4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18252Y A23403G GGG28881AAC C29420T TAGTA29823- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492519
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FF67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A15257G A23403G C27167T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492522
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FF3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T G24368K C24395M GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492533
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FDB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492550
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FF94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13170T C14408T C16260T T19839C C20389T A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492564
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FF58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T G15672T A23403G C23731T G28580T GGG28881AAC G29737K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492565
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FF2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492581
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FDE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5152A C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492583
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FEB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5629A C14408T T19839C A23403G G25552T C25714T GGG28881AAC C29061T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492584
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FE2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492600
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FD8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C815T A2480G C2558T C5849T G7790A G11083T C14805T G26144T G29706T G29778A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492617
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FE5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3917G C8782T T9477A C14805T G25979T GTT26155- T28144C C28657T C28863T G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492628
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FE88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5629A C13665T C14408T T19839C A23403G G25552T C25714T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492640
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FEC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492673
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FEA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5629A C14408T T19839C A23403G G25552T C25714T GGG28881AAC C29061T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492677
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FD7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2570T C3037T C14408T A23403G C24418T G27084A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492678
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FE6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492691
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FE97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C92T C241T C3037T C5183T C7765T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492695
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FE79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14763T A23403G T27438C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492701
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FE3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T C25603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492706
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FF76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13170T C14408T C16260T T19839C C20389T A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492707
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FEF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T C14408T G19300T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492722
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FFD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2508T C3037T A11782G C14408T G22203T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_492723
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FF49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T G15672T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492728
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FE00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A6659G G9182A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492729
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FFA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492732
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FE1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492733
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FD5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4148K C14408T C16293Y T19557Y A23403G GGG28881AAC G29737K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492742
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FDA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417K C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492745
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/BRIS-12FD6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2706T A7025G C9724T G11083T C14805T G21159A G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492865
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C14408T A16932T A23403G C23595G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492887
 2020-04-10 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494521 MT786820
 2020-04-10 2020-07-22
 United States SARS-CoV-2/human/USA/LA-QDX-167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T G20433A C22530T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494539 MT786838
 2020-04-10 2020-07-22
 United States SARS-CoV-2/human/USA/TX-QDX-168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1230G C3037T C9893T C10029T C11916T C14408T A23403G T25412C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494540 MT786839
 2020-04-10 2020-07-22
 United States SARS-CoV-2/human/USA/TX-QDX-169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28887T C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494541 MT786840
 2020-04-10 2020-07-22
 United States SARS-CoV-2/human/USA/TX-QDX-170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28887T C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495301 MT791938
 2020-04-10 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0628/2020
 ATTAAAGGTT1- C241T C1059T G2258A C3037T C11866T C14408T A23403G G25563T G28628T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_495302 MT791939
 2020-04-10 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_495303 MT791940
 2020-04-10 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0630/2020
 ATTAAAGGTTTATACC1- C241T C3037T T4389G T9659C C14408T C18877T G22770A A23403G G24434T G25459T G25555T G25563T G28086T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_495309 MT791945
 2020-04-10 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T G5555A C14408T A23403G G25563T C27005T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_495310
 2020-04-10 2020-07-22
 United States hCoV-19/USA/VA-DCLS-0638/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T C26151T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495322 MT791956
 2020-04-10 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C619T C1059T C3037T C5826T C14408T A14912G A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_495324 MT791958
 2020-04-10 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0652/2020
 ATTAAAGGTTTATACC1- C8078T G11083T C14805T T17247C G26144T A29844G

EPI_ISL_495329 MT791963
 2020-04-10 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A652T C1059T C3037T C7834T C14408T A23403G G25563T C27688T

EPI_ISL_498697 MT806758
 2020-04-10 2020-07-27
 United States SARS-CoV-2/human/USA/CA-QDX-221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T C14786T C21233T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498698 MT806759
 2020-04-10 2020-07-27
 United States SARS-CoV-2/human/USA/CA-QDX-222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498738 MT806799
 2020-04-10 2020-07-27
 United States SARS-CoV-2/human/USA/TX-QDX-218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11074T G11083T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498739 MT806801
 2020-04-10 2020-07-27
 United States SARS-CoV-2/human/USA/TX-QDX-220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15732T T19143C A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500459 MT806800
 2020-04-10 2020-07-27
 United States SARS-CoV-2/human/USA/TX-QDX-219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11074T G11083T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506996
 2020-04-10 2020-08-03
 Malaysia hCoV-19/Malaysia/7685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6312A T6634Y G11083T C13730T C19524T C23929T C28311T T29867A

EPI_ISL_507180
 2020-04-10 2020-08-03
 United Kingdom hCoV-19/Scotland/EDB1334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T G29543C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508923
 2020-04-10 2020-08-04
 France hCoV-19/France/ARA23001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C539T C3037T C14408T C15324T C23320T A23403G C25433T G25855T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508924
 2020-04-10 2020-08-04
 France hCoV-19/France/ARA23076/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C3140T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508925
 2020-04-10 2020-08-04
 France hCoV-19/France/ARA23092/2020
 ATTAAAGGTTTATACC1- C241T C3037T A3842G C8251T C10377T C14408T C15324T A15860G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508926
 2020-04-10 2020-08-04
 France hCoV-19/France/ARA23121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C8802T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509082
 2020-04-10 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8676C C14408T G20980A A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_511495
 2020-04-10 2020-08-08
 Portugal hCoV-19/Portugal/PT0945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC C29218T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511677
 2020-04-10 2020-08-08
 Portugal hCoV-19/Portugal/PT1130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C9711T C14408T T19500C A23403G G24077T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511678
 2020-04-10 2020-08-08
 Portugal hCoV-19/Portugal/PT1131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2094T C3037T C14408T G15327T G18984T A23403G C28087T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512816 MT872496
 2020-04-10 2020-08-11
 Sierra Leone SARS-CoV-2/human/SLE/KGH-G-8625/2020
 ATTAA1- A6T G315T C8782T C8950T G9802A C10818T C14184T A16512G C19951T G22468T G24992C G26428T T28144C G28878A G29742A

EPI_ISL_512817 MT872492
 2020-04-10 2020-08-11
 Sierra Leone SARS-CoV-2/human/SLE/KGH-G-8626/2020
 ATTAAA1- C8782T G9802A C10818T A16512G C19951T G22468T C25702T G26428T T28144C G28878A G29742A

EPI_ISL_512822
 2020-04-10 2020-08-12
 Singapore hCoV-19/Singapore/489ilmn/2020
 ATTAAAGGTTTA1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T TAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29699-

EPI_ISL_512830
 2020-04-10 2020-08-12
 Singapore hCoV-19/Singapore/794/2020
 ATTAAAGGTTTATACCTTCCC1- C6310A C6312A G11083T C13730T C14183T C19524T C23929T T25345C C26642T C28311T AAAAAAAAAAAA29892-

EPI_ISL_514315
 2020-04-10 2020-08-16
 Israel hCoV-19/Israel/CVL-n14292/2020
 A1- C241T C1059T C3037T C11916T C14408T C18998T A22390G A23403G G25563T G29540A

EPI_ISL_514469
 2020-04-10 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D17A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514472
 2020-04-10 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D1947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514473
 2020-04-10 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D1956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T T7942C C9491T G11083T C11563T C14805T C18568T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514474
 2020-04-10 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D1965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15451A A23403G G24620T GGG28881AAC C29420T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514477
 2020-04-10 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D19B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T A4916C G11083T C14805T A21081G C23603T G26144T C26681T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514478
 2020-04-10 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D19CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9737G C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514479
 2020-04-10 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D19ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515353
 2020-04-10 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_516653
 2020-04-10 2020-08-21
 Peru hCoV-19/Peru/INS-049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G27478T GGG28881AAC G28895T G29179T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_516807
 2020-04-10 2020-08-24
 Singapore hCoV-19/Singapore/807/2020
 ATTA1- C6310A C6312A G11083T C13730T C19524T C23929T A27675C C28311T AAAAAAAAAAAA29892-

EPI_ISL_517522
 2020-04-10 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D330B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517531
 2020-04-10 2020-08-24
 Peru hCoV-19/Peru/INS-055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T G4657T C5907T C14408T C15277T G19872T A21917G A23403G C25872T A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_520718
 2020-04-10 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920331360/2020
 C884T G1397A C8645T G8653T G11083T A19073G C26305A G27915T T28688C C28868T C29077T G29742T

EPI_ISL_522610 MT973373
 2020-04-10 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C4540T A4624G C8782T T9477A C14805T G25979T G26062T T28144C C28311T T28561K C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_522665 MT973307
 2020-04-10 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C4540T A4624G C8782T T9477A C14805T G25979T G26062T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_522867
 2020-04-10 2020-08-26
 Italy hCoV-19/Italy/VR-IZSVe-71-10/2020
 AT1- C241T C3037T C14408T C18747T A23403G GGG28881AAC AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_523976
 2020-04-10 2020-08-27
 Brazil hCoV-19/Brazil/SP-181/2020
 ATTAAAGGTTTATACCTTCCCAG1- T25C C241T C3037T T10771C C14408T T14501C C20759T A23403G T27299C GGG28881AAC T29148C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_523977
 2020-04-10 2020-08-27
 Brazil hCoV-19/Brazil/SP-182/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12053T C14408T T14501G C20132T A23403G G25088T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_523978
 2020-04-10 2020-08-27
 Brazil hCoV-19/Brazil/SP-195/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G G25088T GGG28881AAC A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_523981
 2020-04-10 2020-08-27
 Brazil hCoV-19/Brazil/SP-200/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G3692A C6541T C12053T C14408T A23403G G25088T GGG28881AAC G29402T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_524876
 2020-04-10 2020-08-28
 United States hCoV-19/USA/MD-MDH-0148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C2416T C3037T A10323G C14408T A23403G C24809T G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525665
 2020-04-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-43604-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11224T C14408T C21059T T22963C A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525666
 2020-04-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-44440-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C619T C1059T C3037T C12781T C14408T A14912G C16887T G19086T T23323C A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525667
 2020-04-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-44556-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525668
 2020-04-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-44557-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525669
 2020-04-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-44600-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525670
 2020-04-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-44639-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C619T C1059T C3037T C14408T A14912G C16750T A19116G A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525671
 2020-04-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-44644-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T T22846C A23403G G25563T C29375T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525678
 2020-04-10 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-46318-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1387T C3037T C14408T A20755C A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_526215
 2020-04-10 2020-09-01
 Hungary hCoV-19/Hungary/MH-597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3426T C3686T T10567C C14408T A23403G G25074T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526836
 2020-04-10 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A652T C1059T C3037T A10904G C14408T C20371A A23403G G25563T C27688T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_526837
 2020-04-10 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0660/2020
 ATTAAAGGTTT1- C241T A652T C1059T C3037T C14408T A23403G G25563T C27688T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_526839
 2020-04-10 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A652T C1059T C3037T C14408T A23403G G25563T C27688T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_527061
 2020-04-10 2020-09-03
 Australia hCoV-19/Australia/NSW2576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G25979T T27597C T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527380
 2020-04-10 2020-09-03
 Italy hCoV-19/Italy/APU-UniMI-4663/2020
 C241T TAG423- C2102T C3037T C5365T C14408T A23403G GGG28881AAC G29540T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_527712
 2020-04-10 2020-09-04
 United States hCoV-19/USA/MN-CDC-6501/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_530062
 2020-04-10 2020-09-10
 Spain hCoV-19/Spain/MD-LP59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12970T C14408T A20268G A23403G C28333T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534769
 2020-04-10 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2762/2020
 C241T C3037T T4651C C14408T A23403G C25350T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_534780
 2020-04-10 2020-09-14
 United Kingdom hCoV-19/England/OXON-B28E7/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_534796
 2020-04-10 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2B48/2020
 C241T C1288T C3037T C6723T C14408T A23403G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_534800
 2020-04-10 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2C09/2020
 C241T A1630C C3037T C14408T A23403G C27679T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_534819
 2020-04-10 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2E6D/2020
 C16M C241T C3037T C9438T C14408T A23403G G25429T C26461T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_534888
 2020-04-10 2020-09-14
 United Kingdom hCoV-19/England/OXON-B37AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C14408T G22592T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535364
 2020-04-10 2020-09-14
 United States hCoV-19/USA/OK-ADDL-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13498G C14408T A20268G A23403G T24076C G25062T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537467
 2020-04-10 2020-09-16
 United States hCoV-19/USA/CA-UCLA-1/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T G29645T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_537481
 2020-04-10 2020-09-16
 United States hCoV-19/USA/CA-UCLA-137/2020
 ATTAAAGGTTTAT1- C241T C379A C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_537482
 2020-04-10 2020-09-16
 United States hCoV-19/USA/CA-UCLA-138/2020
 ATTAAAGGTTTA1- C241T C379A C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_537483
 2020-04-10 2020-09-16
 United States hCoV-19/USA/CA-UCLA-139/2020
 ATTAAAGGTTTATA1- C241T C379A C1059T C3037T A14041G C14408T C22323T A23403G G25563T C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_537485
 2020-04-10 2020-09-16
 United States hCoV-19/USA/CA-UCLA-140/2020
 ATTAAAGGTTTATACC1- C241T G806A C3037T C4752T C5467T C8389T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_537486
 2020-04-10 2020-09-16
 United States hCoV-19/USA/CA-UCLA-141/2020
 ATTAAAGGTTTAT1- C37T C241T C1059T C3037T C6406T C9967T C14408T C17104T A23403G A24952G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_537487
 2020-04-10 2020-09-16
 United States hCoV-19/USA/CA-UCLA-142/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C4596T C14408T A23403G G25563T C27577T G27613A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_538137
 2020-04-10 2020-09-16
 Spain hCoV-19/Spain/AN-CSIC-98001722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- A1846G C5184T C6070T C8782T A8833G T9477A C14805T C17439T C20611T A22151G G24815S A24955G G25979T C26340Y T28144C C28657T G28736A C28863T T29023C T29619A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538382
 2020-04-10 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538383
 2020-04-10 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2866/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538384
 2020-04-10 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538385
 2020-04-10 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C21639T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538495
 2020-04-10 2020-09-17
 Singapore hCoV-19/Singapore/960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538496
 2020-04-10 2020-09-17
 Singapore hCoV-19/Singapore/961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T T21769C C23185T C23679T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538497
 2020-04-10 2020-09-17
 Singapore hCoV-19/Singapore/962/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538758
 2020-04-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9FCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9565T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538760
 2020-04-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A97F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1728C C3037T C14408T A17987R G21268T C21859T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538768
 2020-04-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9F91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G377T C3037T T12045C C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538770
 2020-04-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9F19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538772
 2020-04-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A976C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C8092Y G8371T C14408T A23403G G25563T G29032K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538777
 2020-04-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9F0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11822G C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538780
 2020-04-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9EFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10505G C12623T C14408T A23403G C27046T GGG28881AAC C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538783
 2020-04-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9FBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9565T C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538784
 2020-04-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9F28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1820A G11083T C14805T G16935T T17247C G17686T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538828
 2020-04-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A99EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C364T T3163Y C8782T G11230T C23536T T28144C G28167A G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538838
 2020-04-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9A72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C6449T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538911
 2020-04-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A98A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25275A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538919
 2020-04-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A99FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10505G C12623T C14408T A23403G C27046T GGG28881AAC C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538973
 2020-04-10 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9ED0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541240
 2020-04-10 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1230/2020
 ATTAAA1- C241T C1059T C3037T C11668T C14408T A23403G G25563T G28374A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_541762
 2020-04-10 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286F2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6120T C14408T A23403G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541779
 2020-04-10 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286E4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9661T C10604T C14408T C21306T A23403G C24130T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542487
 2020-04-10 2020-09-23
 United States hCoV-19/USA/TX-HMH-1002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18055A G19525T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542492
 2020-04-10 2020-09-23
 United States hCoV-19/USA/TX-HMH-1011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C G28460A C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542513
 2020-04-10 2020-09-23
 United States hCoV-19/USA/TX-HMH-1059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G9434A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542518
 2020-04-10 2020-09-23
 United States hCoV-19/USA/TX-HMH-1071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4255A C14408T A23403G G25563T C27964T C28367T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542520
 2020-04-10 2020-09-23
 United States hCoV-19/USA/TX-HMH-1073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T G11083T C14408T G17808T A23403G G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_545835
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17808T C21721T A23403G G25563T T27384C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545846
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545847
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18055A G19525T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545848
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3784T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545849
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545850
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25919T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545857
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545859
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545861
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T G25906T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545907
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6226C G6341T C14408T C18570T G21974T A23403G G25563T G27361T C28687T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545908
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T G7936T C8782T C8950T G12478A T18736C G21051A C24034T C25433T T26729C T26972C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545939
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545940
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C G28460A C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545941
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G19518T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545945
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C162T C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545946
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T997C C1059T C3037T C5672T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545947
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A C13862T T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545948
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A18082G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545949
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C14408T G16979T A23403G G25563T C27964T C29741T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546019
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C14408T G16979T A23403G G25563T C27964T C29741T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547217
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G19518T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547245
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3634T C14408T C18877T G19847A A23403G C24642T G25563T A28480T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547255
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547288
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T T22228C A23403G C24642T T24982C G25563T C27964T C29409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547300
 2020-04-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560790
 2020-04-10 2020-09-29
 United States hCoV-19/USA/MN-MDH-1703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_560791
 2020-04-10 2020-09-29
 United States hCoV-19/USA/MN-MDH-1704/2020
 ATTAAAG1- C241T C1059T C1314T C3037T C14408T A23403G G25563T A27821G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_568877
 2020-04-10 2020-10-02
 France hCoV-19/France/IHU-0593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C18175T A20268G A23403G ACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29768-

EPI_ISL_568878
 2020-04-10 2020-10-02
 France hCoV-19/France/IHU-0594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C18175T A20268G A22124T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568880
 2020-04-10 2020-10-02
 France hCoV-19/France/IHU-0597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C18175T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568881
 2020-04-10 2020-10-02
 France hCoV-19/France/IHU-0601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C197A C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568882
 2020-04-10 2020-10-02
 France hCoV-19/France/IHU-0602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C18512T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568884
 2020-04-10 2020-10-02
 France hCoV-19/France/IHU-0604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1427T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569602
 2020-04-10 2020-10-02
 France hCoV-19/France/IHU-0583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C241T AAGTCATTT686- C1059T C3037T C14408T G16377T A23403G C24824T G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569603
 2020-04-10 2020-10-02
 France hCoV-19/France/IHU-0584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C6401T G8371T C14408T A19494G A23403G G24998A G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569604
 2020-04-10 2020-10-02
 France hCoV-19/France/IHU-0586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T T13006C C14391T C14408T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569605
 2020-04-10 2020-10-02
 France hCoV-19/France/IHU-0587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569606
 2020-04-10 2020-10-02
 France hCoV-19/France/IHU-0589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C18175T A19963T A20268G A23403G GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_569607
 2020-04-10 2020-10-02
 France hCoV-19/France/IHU-0590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C10626T C14408T C15324T C18115T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569608
 2020-04-10 2020-10-02
 France hCoV-19/France/IHU-0592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C18175T A20268G A23403G GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

MT416725
 2020-04-10 2020-04-30
 India SARS-CoV-2/human/IND/8003/2020
 C241T C313T C3037T C5700A C14408T C18928T A23403G G23593C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT416726
 2020-04-10 2020-04-30
 India SARS-CoV-2/human/IND/8004/2020
 C241T C313T C3037T C5700A C14408T C18928T A23403G G23593C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT706239
 2020-04-10 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G T27348C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706260
 2020-04-10 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G16381A T17877C C20316T G25500T G26211T T28144C G28878A C29269T G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706270
 2020-04-10 2020-07-03
 United States SARS-CoV-2/human/USA/IL-UW-142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706273
 2020-04-10 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T G19254T A23403G A23947G G28539T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706275
 2020-04-10 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810584
 2020-04-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0470-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811001
 2020-04-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0386-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C11704T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811003
 2020-04-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0388-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C936T C3037T T5158G C14408T A23403G C25614T A26759G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811187
 2020-04-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0479-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A2240G C8782T G13007A C17747T A17858G C18060T A24694T C25207T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811219
 2020-04-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0525-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C10156T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811352
 2020-04-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0760-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1911T C3037T C14408T C15810T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811359
 2020-04-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0771-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C10156T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811360
 2020-04-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0772-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A2240G C8782T G13007A C17747T A17858G C18060T A24694T C25207T T28144C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873068
 2020-04-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00751/2020
 ATTAAA1- C241T C1059T C3037T C14408T G15760A G20056A A23403G G25563T

MT873071
 2020-04-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00747/2020
 ATTAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873154
 2020-04-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00745/2020
 ATTA1- T13C C241T C2416T C3037T G10631T C14408T T15723C A23403G G23463T G25563T

MT873206
 2020-04-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00757/2020
 ATTAAA1- C1063T G1658A C5758T C8782T T9477A C14805T G22708T C23266T C24748T G25979T C26681T AACTTT27677- T28144C C28657T C28863T

MT873235
 2020-04-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00208/2020
 C241T C2416T C3037T C14408T C21575T A23403G G25563T G26233T

MT873267
 2020-04-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00758/2020
 ATTAAA1- G105T C241T C3037T G11083T C14408T C18877T C20133T A23403G G25563T

MT873314
 2020-04-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00759/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873329
 2020-04-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00743/2020
 AT1- C241T C2416T C3037T C14408T A23403G G25563T T29452C

MT873340
 2020-04-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00753/2020
 ATTAAA1- C241T C2416T C3037T C11322T C14408T A23403G G25563T G26233T G29751T

MT873359
 2020-04-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00749/2020
 ATTAA1- C241T C3037T C14408T A23403G C28603T G28899T

MT873360
 2020-04-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00760/2020
 ATT1- G105T C241T C3037T C14408T C18877T T20528C C21928T A23403G G25563T

MT873369
 2020-04-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00209/2020
 A1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873440
 2020-04-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00746/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

MT873465
 2020-04-10 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00742/2020
 ATT1- C241T C1059T C1263T C3037T G4112T G7235A T11422C C14408T A23403G G25563T

MT907516
 2020-04-10 2020-08-20
 Venezuela SARS-CoV-2/human/VEN/3NE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T GTCATGTTA510- C635T C1059T G2101T C3037T T7425C T10504C C14408T A23403G G25563T C28253T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT937811
 2020-04-10 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C2416T C3037T A10323G C14408T A23403G C24809T G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT967968
 2020-04-10 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6501/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW023501
 2020-04-10 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1230/2020
 ATTAAA1- C241T C1059T C3037T C11668T C14408T A23403G G25563T G28374A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

NMDC60013166
 2020-04-10 2020-06-01
 China hCoV-19/Guangzhou/ID131/2020
 C241T C3037T C14408T C15324T A23403G A29850G TG29867AA

NMDC60013167
 2020-04-10 2020-06-01
 China hCoV-19/Guangzhou/ID130/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T C15324T A23403G G29868A

NMDC60013177
 2020-04-10 2020-06-01
 China hCoV-19/Guangzhou/ID200/2020
 T2C C241T C3037T C14408T C15324T A23403G A29860G G29868M

NMDC60013189
 2020-04-10 2020-06-01
 China hCoV-19/Guangzhou/ID167/2020
 C241T C3037T C14408T C15324T A23403G G29868C

NMDC60013241
 2020-04-10 2020-06-01
 China hCoV-19/Guangzhou/ID129/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T T12436A A13488T C14408T C15324T C21058T A23403G G29868A

NMDC60013242
 2020-04-10 2020-06-01
 China hCoV-19/Guangzhou/ID127/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T T12436A C14408T C15324T A23403G A29126G G29868C

EPI_ISL_422882 LR877811
 2020-04-11 2020-04-11
 Netherlands hCoV-19/Netherlands/NoordBrabant_88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G12071A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_427428
 2020-04-11 2020-04-18
 United States hCoV-19/USA/WI-UW-121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427430
 2020-04-11 2020-04-18
 United States hCoV-19/USA/WI-UW-123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6031T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427433
 2020-04-11 2020-04-18
 United States hCoV-19/USA/WI-UW-126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T A9685G G12478A T18736C A20645G C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430423
 2020-04-11 2020-04-26
 United States hCoV-19/USA/NY-NYUMC396/2020
 C241T C3037T C14408T C17550T A23403G G25644T GGG28881AAC

EPI_ISL_430689 MT641743
 2020-04-11 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1315/2020
 C1076T G1397A T13857C G24933T C25469T C27964T T28688C G29742T

EPI_ISL_430690 MT641744
 2020-04-11 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1316/2020
 C241T C1059T G2164T C3037T C14408T A23403G G25563T G26959A C27964T

EPI_ISL_430693 MT641746
 2020-04-11 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1318/2020
 C1076T G1397A A2861R A8651M G16189R C16658Y G17686K T26121Y C27964T T28688C G29742T

EPI_ISL_430811
 2020-04-11 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C4002T G10097A G10157T C13536T C14408T A23403G C23731T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_430812
 2020-04-11 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C4002T G10097A G10157T T10553Y C13536T C14408T A23403G C23731T G25775T C26801T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_433439
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1404/2020
 C241T C3037T C14408T A23403G G24390T C25433T G29440T

EPI_ISL_433455
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1457/2020
 C241T C3037T C6573T C14408T T14646C A23403G C25528T G27715T GGG28881AAC

EPI_ISL_433456
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1459/2020
 C8782T C17470T T20529C C21648T C26088T T28144C

EPI_ISL_433459
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1469/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_433460
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1470/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433461
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1471/2020
 C241T C3037T C4010T C14408T A20268G A23403G C28854T

EPI_ISL_433906
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B01F/2020
 C241T C3037T C14408T C19366T C22550T A23403G GGG28881AAC

EPI_ISL_433907
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B02E/2020
 C241T C3037T C14408T C16289T C17249T C17678T A23403G G25429T

EPI_ISL_433909
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B06A/2020
 C241T C3037T C12076T C14408T A23403G GGG28881AAC G29701T

EPI_ISL_433910
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B079/2020
 C241T C3037T C12076T C14408T C19484T C19488T A23403G GGG28881AAC G29701T

EPI_ISL_433911
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B088/2020
 C241T C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_433913
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B0A6/2020
 C241T C3037T C14408T C19366T C19955T A23403G GGG28881AAC

EPI_ISL_433914
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B0B5/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_433915
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B0C4/2020
 C241T C3037T C14408T C19366T A23403G GGG28881AAC

EPI_ISL_433919
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B10D/2020
 C241T C3037T C14408T A23403G GGG28881AAC T29680C

EPI_ISL_433920
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B11C/2020
 C241T C3037T C12076T C14408T A23403G GGG28881AAC G29701T

EPI_ISL_433923
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B149/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_433927
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B1A3/2020
 C241T C3037T C14408T G16206T A23403G GGG28881AAC

EPI_ISL_433928
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B1B2/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433933
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B237/2020
 C241T C1059T C1437T C3037T T13006C C14408T A23403G G25563T C25688T

EPI_ISL_433934
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B273/2020
 C241T G1685A C3037T C14408T A21700T A23403G GGG28881AAC

EPI_ISL_433939
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B2EC/2020
 C241T C3037T A3445G C4230T C14408T A23403G GGG28881AAC

EPI_ISL_433942
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B325/2020
 G11083T C14805T T17247C G26144T C26984T

EPI_ISL_433948
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B39E/2020
 C241T C3037T C14408T C16289T A23403G A25315G G25429T

EPI_ISL_433959
 2020-04-11 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B45F/2020
 C241T C3037T C14408T C14786T A23403G T24071C C26176T G26314A T26609C GGG28881AAC

EPI_ISL_434493
 2020-04-11 2020-04-29
 Luxembourg hCoV-19/Luxembourg/LNS1368952/2020
 C241T C3037T C14408T C15324T A23403G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_434593 MT418882
 2020-04-11 2020-04-30
 United States SARS-CoV-2/human/USA/VA-DCLS-0099/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T C25919T C29870A

EPI_ISL_434634
 2020-04-11 2020-04-30
 France hCoV-19/France/OCC-19/2020
 C241T C3037T G7472A C14408T C15324T C19602T T22449A A23403G

EPI_ISL_434635
 2020-04-11 2020-04-30
 France hCoV-19/France/OCC-20/2020
 C241T C1427T C3037T G3419A G3871T C13517T C14408T C15324T C19602T A23403G G28881A

EPI_ISL_435035
 2020-04-11 2020-05-01
 United States hCoV-19/USA/LA-EVTL02/2020 
 C241T C1059T C1912T C3037T C10188T C14408T A23403G T24982C G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_435036
 2020-04-11 2020-05-01
 United States hCoV-19/USA/LA-EVTL03/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T G28899A AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_435684
 2020-04-11 2020-05-05
 Singapore hCoV-19/Singapore/79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6310A C6312A A9419G G11083T C13730T A14644G C19524T C23929T C25931Y T26598C G26849T C28311T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_435685
 2020-04-11 2020-05-05
 Singapore hCoV-19/Singapore/80/2020
 ATTAAAGGTTTATACCT1- C6310A C6312A C8090T A8557G G11083T C13730T C19524T C23185T G23282T C23929T T28245G A28254M C28311T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_436589 MT706403
 2020-04-11 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3653T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437208
 2020-04-11 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0007/2020
 C241T C3037T C8344T C14408T A23403G G25593C

EPI_ISL_437217
 2020-04-11 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0016/2020
 C241T C313T C3037T C13059T C14178T C14408T A23403G GGG28881AAC

EPI_ISL_437243
 2020-04-11 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0044/2020
 C2724T T7747C A9741C G11083T C13119T C14805T T17247C A24710G G26144T

EPI_ISL_437413 MT450899
 2020-04-11 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0198/2020
 AT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_437414 MT450900
 2020-04-11 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_437415 MT450901
 2020-04-11 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0200/2020
 A1- T10W C241T C1218T C2416T C3037T C14408T A23403G G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_437416 MT450902
 2020-04-11 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_437763 MT482110
 2020-04-11 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T9172C A10948G C14408T C21575T C21998T A23403G G26730T GGG28881AAC C29870A

EPI_ISL_437764 MT482111
 2020-04-11 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0120/2020
 ATTAAA1- C241T C3037T T9172C C10818T A10948G C14408T C21575T C21998T A23403G G26730T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_438877
 2020-04-11 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2153/2020
 C241T C1427T C3037T C14408T C16289T A23403G T25222C G25429T C26060T

EPI_ISL_439266
 2020-04-11 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3454/2020
 C241T C2037T C3037T C3543T C14408T C16289T A23403G G25429T C27800T

EPI_ISL_439267
 2020-04-11 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3456/2020
 C241T C3037T C7420T C10798A C13862T C14178T C14408T A23403G C28836T

EPI_ISL_439270
 2020-04-11 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3497/2020
 C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_441913
 2020-04-11 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C18F4/2020
 C241T C3037T C14408T C20133T A21137G A23403G C28236T C28657T

EPI_ISL_441935
 2020-04-11 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C2D8B/2020
 C241T C3037T C5777T C14408T T19839C T22207C A23403G C26681T GGG28881AAC

EPI_ISL_442353
 2020-04-11 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C9FBB/2020
 C241T C1190T C3037T C14408T A23403G A25410C C25831T GGG28881AAC

EPI_ISL_442390
 2020-04-11 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CB687/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_442418
 2020-04-11 2020-05-12
 United Kingdom hCoV-19/England/SHEF-CC880/2020
 C241T C1190T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_442472
 2020-04-11 2020-05-12
 United Kingdom hCoV-19/England/SHEF-D077D/2020
 C241T C3037T C14408T C18568T A20268G A23403G

EPI_ISL_442489
 2020-04-11 2020-05-12
 United Kingdom hCoV-19/England/SHEF-D14DF/2020
 C1457T A2480G C2558T G11083T C14805T G26144T C26340T

EPI_ISL_442862
 2020-04-11 2020-05-12
 United Kingdom hCoV-19/England/CAMB-812C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15720T C16289T A23403G G25429T AAAAAAAAAAAAA29891-

EPI_ISL_442905
 2020-04-11 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C6402T G11083T C14805T G26144T

EPI_ISL_444172
 2020-04-11 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4A52/2020
 C241T C3037T C4002T G10097A C10369T C12459T C13536T C14408T C18568T A23403G C23731T G25477T GGG28881AAC

EPI_ISL_444173
 2020-04-11 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4A61/2020
 C241T C3037T C4002T G10097A C10369T C12459T C13536T C14408T C18568T A23403G C23731T G25477T GGG28881AAC

EPI_ISL_444174
 2020-04-11 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4A70/2020
 C241T C3037T C14408T A23403G T27546C GGG28881AAC

EPI_ISL_444175
 2020-04-11 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4A8F/2020
 C241T C3037T C14408T A20268G C23127T A23403G C28854T

EPI_ISL_444178
 2020-04-11 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4ACB/2020
 C241T C3037T C14408T A23403G A26530G

EPI_ISL_444179
 2020-04-11 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4AE9/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_444180
 2020-04-11 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4B40/2020
 C241T C2416T C3037T C14408T A23403G G25563T

EPI_ISL_444181
 2020-04-11 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4B5F/2020
 C241T C3037T C14408T A23403G C27972T GGG28881AAC

EPI_ISL_444182
 2020-04-11 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4B8C/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_445702
 2020-04-11 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B3BB/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_445708
 2020-04-11 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B412/2020
 A1- C241T C3037T C14408T C22450Y A23403G G28628K GGG28881AAC

EPI_ISL_445862
 2020-04-11 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2BEAB/2020
 ATTA1- G1440A G2891A C25669T G28851T

EPI_ISL_446061
 2020-04-11 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2E136/2020
 ATTAAAGGTTT1- G1440A C1722T G2891A C18713T G28851T

EPI_ISL_446347
 2020-04-11 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-30CB8/2020
 ATT1- C241T C3037T C14408T C14786T C17474T A23403G GGG28881AAC

EPI_ISL_446352
 2020-04-11 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-30D00/2020
 ATTA1- C241T C3037T T5465C C14408T C16393T G21624T A23403G G24102A GGG28881AAC

EPI_ISL_447133
 2020-04-11 2020-05-16
 Belgium hCoV-19/Belgium/ULG-0536/2020
 C241T AAGTCATTT686- C3037T T3478C C14408T C15324T C18979T A23403G A29115G

EPI_ISL_448147
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2167/2020
 C241T C3037T C10798A C13862T C14408T C21304A A23403G C28836T

EPI_ISL_448148
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2168/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_448149
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2169/2020
 C241T C3037T C10798A C13862T C14408T C21304A A23403G C28836T

EPI_ISL_448151
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2173/2020
 ATG1605- C12710T C26447T C28854T

EPI_ISL_448152
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2174/2020
 C241T T1858G C3037T C6548T C10798A C13862T C14408T C22388T A23403G C28836T

EPI_ISL_448154
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2193/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448157
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2196/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448158
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2198/2020
 C241T C541T C1059T C3037T G11083T C14408T A16579G C20270T A23403G G25563T C26111T

EPI_ISL_448162
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2218/2020
 C241T C313T C3037T C14408T G18826T A23403G G27852T GGG28881AAC

EPI_ISL_448232
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8790/2020
 ATTA1- C241T C3037T C14408T A23403G T24060C C25728T GGG28881AAC

EPI_ISL_448233
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E87BE/2020
 ATT1- C241T T1623C C3037T C14408T A23403G G25166C GGG28881AAC

EPI_ISL_448235
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E87DC/2020
 C241T C2940T C3037T G3433T G11335T C14408T A23403G C29118T

EPI_ISL_448237
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E87FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G C25728T GGG28881AAC C29555T

EPI_ISL_448238
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8824/2020
 ATTA1- C241T C3037T C10440Y C14408T A21405T A23403G G27506T GGG28881AAC

EPI_ISL_448243
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E889D/2020
 AT1- C241T C3037T C14408T A21405T A23403G G27506T GGG28881AAC

EPI_ISL_448244
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E88AC/2020
 ATTAAAGG1- C241T C2940T C3037T C14408T A23403G

EPI_ISL_448246
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E88CA/2020
 ATTAA1- C241T C3037T C14408T G22992A A23403G GGG28881AAC C29870M

EPI_ISL_448248
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E88E8/2020
 C241T C3037T T11313C C14408T A23403G GGG28881AAC

EPI_ISL_448249
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E88F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7420T C14408T C21595Y A23403G GGG28881AAC C29420T

EPI_ISL_448251
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8930/2020
 ATTA1- C241T C3037T T11078Y T11119C C14408T A23403G C27864T GGG28881AAC G28913A

EPI_ISL_448254
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E896D/2020
 AT1- C241T C3037T C7006T C14408T C18526T C19421T A23403G G25429T C25916T

EPI_ISL_448255
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E897C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_448256
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E898B/2020
 AT1- C241T C1314Y C3037T G7027R C14408T C15720Y C16289Y G21255K A23403G G25429K C25728Y GGG28881AAC

EPI_ISL_448259
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E89C7/2020
 AT1- C241T C3037T T11313C C14408T A23403G GGG28881AAC C29870M

EPI_ISL_448262
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E89F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2940T C3037T G4080K C14408T A23403G

EPI_ISL_448266
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8A3D/2020
 ATTAAAGGT1- C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_448267
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8A4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T1623C C3037T T5288Y C14408T C16733Y G21604T A23403G G25166C GGG28881AAC

EPI_ISL_449122
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/NORW-E81ED/2020
 ATTAA1- C4755T G11083T C14805T T17247C G26144T

EPI_ISL_449656
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4B9B/2020
 C241T C3037T C14408T G16852T C19488T A23403G G28329A GGG28881AAC

EPI_ISL_449657
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4BAA/2020
 C241T C3037T C14408T G21850T A23403G C26534T G28001T GGG28881AAC

EPI_ISL_449658
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4BB9/2020
 C241T C3037T C14408T A23403G C26534T GGG28881AAC C29722T

EPI_ISL_449659
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4BC8/2020
 C241T C3037T C14408T C21077T A23403G GGG28881AAC

EPI_ISL_449660
 2020-04-11 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4BD7/2020
 C241T C3037T C14408T A23403G C27972T GGG28881AAC

EPI_ISL_449854 MT641568
 2020-04-11 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S684/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_449855 MT641636
 2020-04-11 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S685/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_449869 MT641548
 2020-04-11 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S699/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_449886 MT641600
 2020-04-11 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S716/2020
 C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A

EPI_ISL_449887 MT641628
 2020-04-11 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S717/2020
 G1401A C8782T C17747T A17858G C18060T T28144C

EPI_ISL_449888 MT641588
 2020-04-11 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S718/2020
 C241T C379A C1059T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_449889 MT641592
 2020-04-11 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S719/2020
 G1401A C8782T T13438C C15960T C17747T A17858G C18060T T28144C

EPI_ISL_449896 MT641554
 2020-04-11 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S726/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_449899 MT641580
 2020-04-11 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S729/2020
 C241T C1059T C3037T C14408T A23403G G25563T A28741T

EPI_ISL_449900 MT641536
 2020-04-11 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S730/2020
 C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A

EPI_ISL_449901 MT641543
 2020-04-11 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S731/2020
 C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A

EPI_ISL_449921 MT641508
 2020-04-11 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S751/2020
 C241T T833C C1059T C3037T C14408T C17163T A23403G G25563T C27964T

EPI_ISL_449924 MT641556
 2020-04-11 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S754/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_449961 MT641501
 2020-04-11 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S791/2020
 C1218T C5730T A6693G C8782T C14877T C17747T A17858G C18060T T28144C C28519T A29188T

EPI_ISL_450294 MT499209
 2020-04-11 2020-05-20
 Poland SARS-CoV-2/human/POL/IHG_PAS_1_69/2020
 C241T C3037T C3653T G5572A G9176A C14408T C19488T A23403G GGG28881AAC

EPI_ISL_450295 MT499210
 2020-04-11 2020-05-20
 Poland SARS-CoV-2/human/POL/IHG_PAS_1_73/2020
 C241T C3037T C3653T G5572A G9176A C14408T C19488T A23403G GGG28881AAC

EPI_ISL_450338 MT499208
 2020-04-11 2020-05-20
 Poland SARS-CoV-2/human/POL/IHG_PAS_1_77/2020
 C241T C3037T C3653T G5572A C14408T C19488T A23403G T26780C GGG28881AAC

EPI_ISL_450782 MT509509
 2020-04-11 2020-05-22
 India SARS-CoV-2/human/IND/GBRC95a/2020
 C241T C3037T C14408T C18877T G23311T A23403G T24811A G25563T C26735T

EPI_ISL_450783 MT509505
 2020-04-11 2020-05-22
 India SARS-CoV-2/human/IND/GBRC95b/2020
 C241T C3037T C12616T C14408T G16078A C18877T G21795T C22444T A23403G T24811A G25563T C26735T C28854T

EPI_ISL_451145
 2020-04-11 2020-05-23
 Australia hCoV-19/Australia/SAP147/2020
 ATTAAAGGTTTATACCT1- C241T G1589A C3037T C14408T A23403G G25429T G29474T

EPI_ISL_454399
 2020-04-11 2020-05-28
 United States hCoV-19/USA/PA-MGEL134/2020
 C241T C1059T C3037T C6040T C14408T A23403G G25563T G26690T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454655 MT534305
 2020-04-11 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1235/2020
 ATTAAA1- C8175M T10129Y A14940G T15771Y T29360K C29364M AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_454658 MT534308
 2020-04-11 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1238/2020
 ATTAAAGGTTT1- C8175M T10129Y A14940G T15771Y C24865T A29903-

EPI_ISL_454782
 2020-04-11 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10033/2020
 ATTAAA1- C241T C3037T C14408T G20275A A23403G G24764T G29742T AAAAAA29898-

EPI_ISL_454862
 2020-04-11 2020-05-29
 India hCoV-19/India/THSTI-BAL_231/2020
 C6312A G11083T C13730T C19524T C23929T C28311T

EPI_ISL_455246
 2020-04-11 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14877T C18788T G19684T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_456367
 2020-04-11 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2081/2020
 C241T C3037T C4683T C14408T A23403G G24077T

EPI_ISL_457091
 2020-04-11 2020-06-02
 United Kingdom hCoV-19/England/EXET-13571B/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC

EPI_ISL_457092
 2020-04-11 2020-06-02
 United Kingdom hCoV-19/England/EXET-135739/2020
 C241T C2919T C3037T A13456G C14408T A23403G G25481T GGG28881AAC

EPI_ISL_457098
 2020-04-11 2020-06-02
 United Kingdom hCoV-19/England/EXET-1357B1/2020
 T809C G1440A G2891A C3923T C9438T C10507T A17841C G25740T

EPI_ISL_457103
 2020-04-11 2020-06-02
 United Kingdom hCoV-19/England/EXET-135818/2020
 C7703T T9352C G11083T C14805T G26144T G27201T

EPI_ISL_457222
 2020-04-11 2020-06-02
 United Kingdom hCoV-19/England/EXET-136352/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_458119
 2020-04-11 2020-06-03
 Oman hCoV-19/Oman/205028472/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G7393T G10265A C14408T C16293T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_458279
 2020-04-11 2020-06-04
 United States hCoV-19/USA/CA-SR0409/2020
 C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_460724
 2020-04-11 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460725
 2020-04-11 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T381C C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460726
 2020-04-11 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460727
 2020-04-11 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460728
 2020-04-11 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460729
 2020-04-11 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T381C C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460731
 2020-04-11 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460732
 2020-04-11 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2449T C3037T C14408T G20237A G20275A A23403G G23755T T24640C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460733
 2020-04-11 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G A25747G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460734
 2020-04-11 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATG518- C3037T A12949G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461069
 2020-04-11 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461446
 2020-04-11 2020-06-06
 United States hCoV-19/USA/WA-UW-6663/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T T8242C C14408T A23403G G25563T C28826T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_461447 MT683411
 2020-04-11 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-6671/2020
 AT1GA A4T AACC34TTTA A39T C241T C1059T C3037T C14408T A23403G G25563T G29553A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_461448 MT683412
 2020-04-11 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-6698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_462262
 2020-04-11 2020-06-08
 Belgium hCoV-19/Belgium/DMT-0411408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462461
 2020-04-11 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7387/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15324T A23403G G26648A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463746
 2020-04-11 2020-06-10
 Cyprus hCoV-19/Cyprus/006/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_463957
 2020-04-11 2020-06-11
 Canada hCoV-19/Canada/QC_AY9/2020
 C241T C3037T C5184T C14408T C15324T A23403G C25433T

EPI_ISL_463959
 2020-04-11 2020-06-11
 Canada hCoV-19/Canada/QC_AZ3/2020
 C241T AAGTCATTT686- C3037T C14408T A20268G TTA21991- GTG22578ACA A23403G C26313T C27143T

EPI_ISL_463999
 2020-04-11 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0075/2020
 C241T C2416T C2919T C3037T C14408T A23403G G25563T

EPI_ISL_464011
 2020-04-11 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0091/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25217T G25563T

EPI_ISL_464094 MT590600
 2020-04-11 2020-06-11
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-30/2020
 A1- C241T C3037T C4897T C14408T C20234T A20268G C21772T A23403G C28854T A29903-

EPI_ISL_468417 MT628152
 2020-04-11 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C6011T C14408T A23403G G25563T G26959A C27964T

EPI_ISL_468418 MT628153
 2020-04-11 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1457/2020
 A1- C241T C1059T C1887Y C3037T C14408T A17615G C22993T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_468542 MT628265
 2020-04-11 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1613/2020
 C241T C3037T A11839G C14408T A23403G C26256T C29668T

EPI_ISL_468873
 2020-04-11 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2108/2020
 C241T C3037T G4720T C14408T A21556G A23403G GGG28881AAC C29719A

EPI_ISL_468881
 2020-04-11 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2113/2020
 C241T C3037T C14408T A21556G A23403G GGG28881AAC C29719A

EPI_ISL_468891
 2020-04-11 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2121/2020
 C241T C313T C3037T C14408T G16843R A17677R C19529T A23403G GGG28881AAC

EPI_ISL_468892
 2020-04-11 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2114/2020
 C241T C3037T C14408T A21556R G22335K A23403G GGG28881AAC C29719A

EPI_ISL_468897
 2020-04-11 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2118/2020
 C241T C3037T C14408T A21556G A23403G GGG28881AAC C29719A

EPI_ISL_468899
 2020-04-11 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2122/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_468904
 2020-04-11 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2112/2020
 C241T C3037T C14408T A21556G A23403G GGG28881AAC C29719A

EPI_ISL_468917
 2020-04-11 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2104/2020
 C241T C3037T C14408T A21556G A23403G GGG28881AAC C29719A

EPI_ISL_468933
 2020-04-11 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2096/2020
 C241T C3037T G4720K G6359A C14408T C16568T A20268G A23403G G25218T G29734C

EPI_ISL_468944
 2020-04-11 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2106/2020
 C241T C3037T C14408T G19518K A21556G A23403G G27906K GGG28881AAC C29719A

EPI_ISL_468945
 2020-04-11 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2105/2020
 C241T C3037T C14408T A21556G C21638T A23403G GGG28881AAC C29719A

EPI_ISL_473511
 2020-04-11 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2163/2020
 C241T C3037T C14408T C22879A A23403G A25038T

EPI_ISL_473817
 2020-04-11 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5435/2020
 C241T C2841T C3037T C10798A C13862T C14408T C18086T A23403G C25460T C28836T

EPI_ISL_473818
 2020-04-11 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5436/2020
 C241T C2841T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_473819
 2020-04-11 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5437/2020
 C241T C3037T C14408T A23403G G27281T G28851T GGG28881AAC

EPI_ISL_473820
 2020-04-11 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5438/2020
 C241T C583T C2841T C3037T C10798A T11525G C13862T C14408T A23403G C28836T G28882A

EPI_ISL_473842
 2020-04-11 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5720/2020
 C241T C3037T C10798A C13862T C14408T G19525A A23403G C28291T C28836T G29134A

EPI_ISL_473843
 2020-04-11 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5722/2020
 C241T C3037T G3304T T13717A C14408T A23403G GGG28881AAC

EPI_ISL_473844
 2020-04-11 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5723/2020
 C241T C3037T G3304T T13717A C14408T A23403G GGG28881AAC

EPI_ISL_474963
 2020-04-11 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7216/2020
 C241T C1059T C3037T C14408T A20755C A23403G G25563T T27719C

EPI_ISL_474964
 2020-04-11 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7175/2020
 C241T C1059T C3037T G7295T C9223T C14408T A23403G G25563T

EPI_ISL_474978
 2020-04-11 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7154/2020
 C241T C313T C2388T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_474989
 2020-04-11 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7224/2020
 G11083T C14805T T17247C G26144T G27008T C29627T

EPI_ISL_474996
 2020-04-11 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7169/2020
 C241T C1059T C3037T A5209G C11916T C14408T C18998T AAA22803- A23403G G25563T T28382C G29540A

EPI_ISL_474997
 2020-04-11 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7467/2020
 C241T C3037T T4885C C7851T C14408T C18683T C18877T A21137G C22326T A23403G G25563T

EPI_ISL_475004
 2020-04-11 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7201/2020
 C241T C1059T C3037T G7295T C14408T A23403G G25563T

EPI_ISL_475005
 2020-04-11 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7427/2020
 C241T C635T C1059T C1300T C3037T C6896T G13771A C14408T A20755C A23403G G25563T

EPI_ISL_475011
 2020-04-11 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7451/2020
 C241T C635T C2416T C3037T C14408T C22802A A23403G G25563T

EPI_ISL_475012
 2020-04-11 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7501/2020
 C241T C3037T C10165T C11916T C14408T A23403G GGG28881AAC

EPI_ISL_475023
 2020-04-11 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7422/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475024
 2020-04-11 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7462/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27773G

EPI_ISL_475025
 2020-04-11 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7465/2020
 T1864G C6312A C13730T C19707A C28311T

EPI_ISL_475557
 2020-04-11 2020-06-23
 Sweden hCoV-19/Sweden/20-08840/2020
 G1440A G2891A C7011T

EPI_ISL_475591
 2020-04-11 2020-06-23
 United States hCoV-19/USA/CA-CSMC115/2020
 C241T C1059T C3037T T5675C T6810C C6813G G6816A C8770T T9914C C10377T G10481A C12651G G13531A C14408T A23403G G25563T C26124T C27970T G28001T G29234T

EPI_ISL_475592
 2020-04-11 2020-06-23
 United States hCoV-19/USA/CA-CSMC116/2020
 C241T G1886T A8307G C8321T G10499T G13984A C14408T G14528T A17538C T19003A T19025A T19826C C19884A C28868T A28972G

EPI_ISL_475710
 2020-04-11 2020-06-23
 United States hCoV-19/USA/CA-CSMC93/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_475711
 2020-04-11 2020-06-23
 United States hCoV-19/USA/CA-CSMC94/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_476507
 2020-04-11 2020-06-25
 Canada hCoV-19/Canada/QC_AK1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476848
 2020-04-11 2020-06-26
 India hCoV-19/India/DRDE 759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C6312A G11083T C13730T C23929T G24928T T27384C C28311T A28870G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476950
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4291G C10702T C14408T T19839C C22680T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476951
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476952
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13502T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476953
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C7735T G11083T C14805T G26144T C29284T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476954
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6781T C14408T T19839C C21646T A23403G C23997T C25672T C26846T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476955
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476956
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14980T C15324T A23403G A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476957
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C14408T C16575T T19839C C21846T A23403G GGG28881AAC G29243T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476958
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476959
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G17562T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476960
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476961
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11596T C14408T C15324T A23403G C25433T G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476962
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G10098A G11083T C11580T C14805T T17247C G26144T C27213T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476963
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1758T C3037T C12747T C14408T C16192T C18175T C22281T A23403G G25563T C29153A G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476964
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1125A C3037T A13947T C14408T T21976C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476965
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476966
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1181T C3037T C14408T T19839C C21646T A23403G C26846T GGG28881AAC G29440T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476967
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C10369T T13678C C14408T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476968
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9891T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476969
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1653C C3037T A11839G C12400T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476970
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C G22017T A23403G C24099T C24223T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476971
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13402C C14408T A23403G G25563T C26895T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476972
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9166T C14408T A23403G G25563T G26754T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476973
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3795C C4002T C6730T G10097A C13536T C14408T C15180T A23403G C23731T C27494T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476974
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8394T C14408T C15277T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476975
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4321T C8394T C14408T C15277T C15324T A23403G C25904T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476976
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4011C G4261A G7042T C14408T G20433A C21110T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476977
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1457T C3037T C10125T C14408T A23403G G25186T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476978
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C5497T C7712T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476979
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5812T C8892T A13947T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476980
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476981
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4011C G4261A G7042T C14408T G20433A G20940T C21110T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476982
 2020-04-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0411472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G T25476C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477856
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G28739T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477866
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14599T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477867
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A G12163A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477869
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1264A C3037T C14408T C22879A A23403G G26803A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477870
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477871
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11991G C14408T C15407T T17126C A20268G A23403G C28770T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477872
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477874
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3413T C3885T A5353G C14408T C17104T A20268G A23403G C28253T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478461
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/England/LOND-D71E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17750T A23403G C27046T GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478462
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/England/LOND-D71F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19488T A23403G GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478463
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/England/LOND-D720C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16260T G17944T A23403G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478464
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/England/LOND-D7239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478465
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/England/LOND-D7248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478466
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/England/LOND-D7257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478468
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/England/LOND-D7275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4285T C14408T A23403G C27542T GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478469
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/England/LOND-D72A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T G28658T G28668T GGG28881AAC G29449T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478470
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/England/LOND-D72C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1437T C3037T C11644T T13006C C14408T A23403G G25563T C25688T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_478968
 2020-04-11 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0E14/2020
 C241T C3037T C14408T G21538T G22332A A23403G G25429T AAAA29900-

EPI_ISL_480204
 2020-04-11 2020-07-01
 Japan hCoV-19/Japan/PG-0550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T G14857T A23403G GGG28881AAC G29764T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480218
 2020-04-11 2020-07-01
 Japan hCoV-19/Japan/PG-0579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C5343T T14179A C14408T A23403G G26730A C26753T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_480219
 2020-04-11 2020-07-01
 Japan hCoV-19/Japan/PG-0582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC G29705T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_481532
 2020-04-11 2020-07-03
 Finland hCoV-19/Finland/11A27S7/2020
 C241T C1059T C3037T T8158C C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481533
 2020-04-11 2020-07-03
 Finland hCoV-19/Finland/11A36S7/2020
 AAGTCATTT686- A5198T G11083T G12988T G13627T C14649T C14805T C15540T G26144T A28338G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481534
 2020-04-11 2020-07-03
 Finland hCoV-19/Finland/11A39S7/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481535
 2020-04-11 2020-07-03
 Finland hCoV-19/Finland/11A47S7/2020
 C241T C1059T C3037T G7007A C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481757
 2020-04-11 2020-07-03
 Canada hCoV-19/Canada/NB_274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2210T C3037T C3792T C6255T T6564C C14408T G18811A A23403G T26187C ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482337
 2020-04-11 2020-07-03
 United States hCoV-19/USA/OR-PROV-057/2020
 C241T TGGTCATGTTATGGT508- C1059T C3037T T3312C C14408T A23403G G25563T

EPI_ISL_483340
 2020-04-11 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0761-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1812T C3037T C14408T A23403G G25563T

EPI_ISL_483341
 2020-04-11 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0762-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T C16762T A23403G G25563T T27504A

EPI_ISL_483342
 2020-04-11 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0763-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C16762T A23403G G25563T T27504A

EPI_ISL_483351
 2020-04-11 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0776-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T T5065C C14408T A20268G TTA21991- A23403G

EPI_ISL_483583
 2020-04-11 2020-07-08
 Singapore hCoV-19/Singapore/560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C6310A C6312A C9870T G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483713
 2020-04-11 2020-07-08
 Israel hCoV-19/Israel/n14293/2020
 C241T C1059T C3037T C11916T C14408T C18998T A22390G A23403G G25563T G29540A

EPI_ISL_484424
 2020-04-11 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D184A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T288G C3037T C14408T C18788T T19839C A23403G G28774T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484427
 2020-04-11 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D1877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T T17568C A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484428
 2020-04-11 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D1886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A4236G G5008A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484429
 2020-04-11 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D18A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484565
 2020-04-11 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G C28708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484567
 2020-04-11 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12070T C14408T T17126C A20268G G22335T A23403G A27578T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484568
 2020-04-11 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17278T C19610T A23403G G25429T T26906C G29688T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484569
 2020-04-11 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A C3037T C3411T C3885T C14408T C17104T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484571
 2020-04-11 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C15180Y C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485004
 2020-04-11 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26159751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A5875G C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485006
 2020-04-11 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26159754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485009
 2020-04-11 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26159759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A5875G C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485015
 2020-04-11 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26159765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1912T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485265
 2020-04-11 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C100A C241T C1059T G1980A C3037T C10641T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485269
 2020-04-11 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8950T C14408T C17444A A23403G G25563T C27964T C29025T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485278
 2020-04-11 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C14408T A23403G G25563T C27964T C29353T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485282
 2020-04-11 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C14408T A23403G G25563T C27964T C29353T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485287
 2020-04-11 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26684467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1188T C2878T C3037T C4570T C14408T C15701T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486289 MT750459
 2020-04-11 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- CC320SY C4776T C8782T G12578K C17747T A17858G C18060T A23122V T25902W T25908W G25913S G28086T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486290
 2020-04-11 2020-07-10
 United States hCoV-19/USA/CA-CZB-2046/2020
 AT1- C241T A1633R C3037T T9172C A10948G C14408T T16950C A23122R A23403G T25902W T25908W G25913S G26730T GGG28881AAC

EPI_ISL_486872
 2020-04-11 2020-07-12
 Senegal hCoV-19/Senegal/6430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29831-

EPI_ISL_487671
 2020-04-11 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G C25672Y C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487886
 2020-04-11 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487958
 2020-04-11 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB1403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8025T C14408T A20268G A23403G G28230K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487985
 2020-04-11 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8179T C14408T C20823T A23403G C23422T T23849C C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488240
 2020-04-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488305
 2020-04-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C14408T G16647T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488427
 2020-04-11 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F18F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489860 EPI_ISL_491056
 2020-04-11 2020-07-14
 Romania hCoV-19/Romania/ROSV_1979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T2593C C3037T C6286T ATGTACTGAAGTCAGAGGACGCGCAGGGAATGGATAA6342- G10642T C14408T ATGCCCGTAATGGTGTTCTTATTACAGAAGGTAGTGTTAAAGGTT20027- A20268G AAGGCTATGCCTTCGAACATATCGTTTATGGAGATTTTAGTCATAGTCAGTTAGGTGGTTTAC20303- A23403G CCATCCTTACTGC26339- GC26352AA GCATT29229- TAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29823-

EPI_ISL_490048
 2020-04-11 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC14227/2020
 ATTAAAGGTTTATA1- CC15TA T27618C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_491500
 2020-04-11 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491508
 2020-04-11 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T C25160T T26715K G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491561
 2020-04-11 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491667
 2020-04-11 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491672
 2020-04-11 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T3268C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491698
 2020-04-11 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491931 MT776426
 2020-04-11 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_3129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492426
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18536D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A15257G A23403G C27167T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492506
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8018A C14408T T19839C A23403G C26681T GGG28881AAC G29383C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492510
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1301D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2000G C3037T C14408T C14676A A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492511
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1302F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T G11083T C14408T G16861T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492520
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1301B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1426T A2480G C2558T G11083T G14710T C14805T C21846T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492527
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1301C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29420T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492532
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1304DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A G20434T A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492535
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2194M C2416T C3037T C14408T C14786T G20578T A23403G G25563T C25678T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492538
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C703T C829T C6628T T9519C G11083T C14805T T17247C A20742G G26144T C26461T C26527T A28052T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492541
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C C19973T A23403G C26681T GGG28881AAC G29383C C29585Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492543
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492545
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13007F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T T10676C C14408T C16393T A23403G C26256T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492556
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1303A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C8327T C14408T G18634A A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492559
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1304A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492560
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13017C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492562
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13016D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A12960G C14408T T17763C C21575T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492566
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492573
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13024C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1270C C3037T C6573T C14408T A20268G A23403G C26606T C28775T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492574
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1304BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492576
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13031C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6283C C14408T T19839C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492578
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13014F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2395T C3037T C6573T C8481A C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492579
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T G11083T G12338A C14408T G16861T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492586
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1304CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T G4720A C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492602
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1301A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T A8031G C14408T A23403G C23758T G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492605
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C14408T C22000T A23403G C27679T GGG28881AAC G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492608
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1303D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A873G C884Y C3037T T3877A G7038A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492609
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17004T A23403G G23873T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_492614
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C26681T GGG28881AAC G29383C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492616
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- G970A C2416T C3037T A3342C T13075C C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492618
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8139Y C14408T A23403G G24077T G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492625
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13009D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T G28221T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492626
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13617T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492644
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13023D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A19543C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492645
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13015E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T C11074Y G11083T C12896A C14408T G16861T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492647
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1302E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T G11083T C14408T G16861T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492648
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T G4720A C14408T A18924R A23403G C26270Y GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492649
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- AAGTCATTT686- C5310T G6337T G11083T C14805T A17725C G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492651
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C14408T C22000T A23403G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492661
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492663
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1300BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A8107W C14408T G22104K A23403G G25563T G25634K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492666
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1301E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492669
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13021F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1437T C5310T G6337T G11083T C14805T C20233T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492679
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1303B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815T A1630C C3037T G13858K C14408T C22000T A23403G C25508T C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492681
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1300AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C2189Y C9223T C9491T G11083T G12565T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492684
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C26681T C28311T GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492685
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13040A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T G22203T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492686
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13019A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492687
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3704Y CT6781YY C14408T C19170Y G19509R G21624K A23403G A23998M G26116K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492690
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1302B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1091T G1440A G2891A C5907T C14554T C17876T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492692
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1300D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C13008T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492693
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21789T A23403G C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492697
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492699
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T G12817T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492700
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T G12261A C14408T T19839C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492703
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13022E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492705
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1301F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492708
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1302A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492709
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13018B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492711
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C6361T C14408T C14786T G20578T A23403G G25337K G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492712
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T C16699T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492713
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2395T G2448A C3037T C6573T C8481A C14408T G18972T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492716
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1302C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C11074Y G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492725
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13030D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T G26144T C28333Y G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492739
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1303FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492740
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6283C C8386Y C14408T T19839C T23392C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492744
 2020-04-11 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495306 MT791942
 2020-04-11 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_495307 MT791943
 2020-04-11 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C6990T C11916T C14408T C18998T A23403G G25563T G25947C G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_495308 MT791944
 2020-04-11 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T G11083T C14134T C14408T A23403G A23985T G25563T T27384C T29173G C29870A

EPI_ISL_495311 MT791946
 2020-04-11 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0639/2020
 ATTA1- C241T C619T C1059T C3037T C7600T G14277T C14408T A14912G A23403G G25563T

EPI_ISL_495312 MT791947
 2020-04-11 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T833C C1059T C3037T C14408T A23403G A24292T G25563T C27964T G29742T C29870A

EPI_ISL_495313 MT791948
 2020-04-11 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0641/2020
 ATTA1- C241T C1059T C3037T C6539T C14408T G21468A A23403G G25563T G29528T G29540T

EPI_ISL_495314 MT791949
 2020-04-11 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0642/2020
 ATTA1- C241T G1042A C1059T C3037T C14408T C14925T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495315 MT791950
 2020-04-11 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1642T C3037T T9172C A10948G C14408T G22094A A23403G G26730T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_495319 MT791953
 2020-04-11 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3311T G4127A C11916T C14408T C18998T A23403G G25563T G29540A C29769T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_495320 MT791954
 2020-04-11 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0648/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T T19378A A23403G C25561T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_495321 MT791955
 2020-04-11 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T C29870M

EPI_ISL_495323 MT791957
 2020-04-11 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0651/2020
 ATTAAAGGT1- C241T C1059T C3037T C6990T C11916T C14408T C18998T A23403G G25563T G25947C G29540A A29875C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_495325 MT791959
 2020-04-11 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0653/2020
 AT1- C241T C2416T C3037T G4523A C10712T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495326 MT791960
 2020-04-11 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_495328 MT791962
 2020-04-11 2020-07-22
 United States SARS-CoV-2/human/USA/VA-DCLS-0657/2020
 ATT1- C241T C1059T C3037T A3599G C14408T C14925T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496553
 2020-04-11 2020-07-24
 India hCoV-19/India/BJMC_838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2137T C3037T C14408T A23403G C24588T

EPI_ISL_498699 MT806760
 2020-04-11 2020-07-27
 United States SARS-CoV-2/human/USA/CA-QDX-223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_506995
 2020-04-11 2020-08-02
 South Korea hCoV-19/Korea/KCDC2202/2020
 ATTAAAGGTTT1- T13A C15A C241T C1059T C3037T C11074T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_507037 MT820480
 2020-04-11 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KFSHRC44/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T A11869G C14408T A23403G T27484C GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_508927
 2020-04-11 2020-08-04
 France hCoV-19/France/ARA23544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- C241T C3037T G5273A C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508928
 2020-04-11 2020-08-04
 France hCoV-19/France/ARA23813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T C14676T C18647T A23403G G25563T G28077T C29625T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508929
 2020-04-11 2020-08-04
 France hCoV-19/France/ARA23893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_508931
 2020-04-11 2020-08-04
 France hCoV-19/France/ARA24023/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_509084
 2020-04-11 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G T25729C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509086
 2020-04-11 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6026T C14408T A23403G G25563T AAAAAAAA29896-

EPI_ISL_509087
 2020-04-11 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6026T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509451 MT827213
 2020-04-11 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0047/2020
 A1- C241T A263G C1191T C1471T C3037T T7030A C8016T C8389T C14408T A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_511496
 2020-04-11 2020-08-08
 Portugal hCoV-19/Portugal/PT0946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511497
 2020-04-11 2020-08-08
 Portugal hCoV-19/Portugal/PT0947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15182T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_514226
 2020-04-11 2020-08-14
 Peru hCoV-19/Peru/INS-041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_514316
 2020-04-11 2020-08-16
 Israel hCoV-19/Israel/CVL-n14293/2020
 A1- C241T C1059T C3037T C11916T C14408T C18998T A22390G A23403G G25563T G29540A

EPI_ISL_515245
 2020-04-11 2020-08-18
 Canada hCoV-19/Canada/QC_BC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515354
 2020-04-11 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0076/2020
 ATTA1- C241T C379A C1059T C3037T C14408T C18377T A23403G G25563T T28187C

EPI_ISL_516628
 2020-04-11 2020-08-21
 Peru hCoV-19/Peru/INS-045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C18877T A23403G C23718T G25563T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_516647
 2020-04-11 2020-08-21
 Peru hCoV-19/Peru/INS-047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C5907T C14408T C15277T A21917G A23403G C25872T A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_516654
 2020-04-11 2020-08-21
 Peru hCoV-19/Peru/INS-050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGAC1- C241T C3037T C14408T C18877T A23403G C23718T G25563T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_516686
 2020-04-11 2020-08-21
 Peru hCoV-19/Peru/INS-052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A A10323G C13536T C14408T A23403G C23731T GGG28881AAC G29179T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_516721
 2020-04-11 2020-08-21
 Peru hCoV-19/Peru/INS-053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T G16014A A23403G C23731T A26530T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_516722
 2020-04-11 2020-08-21
 Peru hCoV-19/Peru/INS-054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C5907T C14408T C15277T A21917G A23403G C25872T A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_517526
 2020-04-11 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D33A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6968T C14408T C21697T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522696 MT973334
 2020-04-11 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C4540T A4624G C8782T T9477A C14805T G25979T G26062T T28144C C28311T C28657T C28863T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_522697 MT973335
 2020-04-11 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C1076T C4540T A4624G C8782T T9477A C14805T G25979T G26062T T28144C C28311T C28657T C28863T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_523972
 2020-04-11 2020-08-27
 Brazil hCoV-19/Brazil/SP-176/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3093T G3340T C14408T C15324T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_525560
 2020-04-11 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-5409/2020
 A1GGGGA C241T C3037T T7217C C14408T A23403G C26351T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_525561
 2020-04-11 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-5410/2020
 A1TTGACGCCGGA C241T C3037T T12697C C14408T A23403G GGG28881AAC A29897G AAA29901G

EPI_ISL_525562
 2020-04-11 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-5418/2020
 -T2AGCCACTG C241T C3037T T12697C C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_525563
 2020-04-11 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-5425/2020
 -2ACCGGA C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_525564
 2020-04-11 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-5428/2020
 A1CCCCGGA C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872TTCTG

EPI_ISL_525565
 2020-04-11 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-5429/2020
 A1CCACCCCGA C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_525566
 2020-04-11 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-5430/2020
 A1CCCCCA C15A C241T C3037T C14408T A23403G GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_525567
 2020-04-11 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-5433/2020
 A1CCCCCGGGA C241T C3037T C14408T A23403G GGG28881AAC T29867- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525568
 2020-04-11 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-5436/2020
 A1CCCCGGA C241T C3037T T7217C C14408T A23403G GGG28881AAC CTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29784-

EPI_ISL_525569
 2020-04-11 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-5439/2020
 A1CCGGCCGA C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_525673
 2020-04-11 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-45078-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C619T C1059T C3037T C3498T C14408T T20520C A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_525680
 2020-04-11 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-46320-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3369T C14408T C16887T C18877T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_526840
 2020-04-11 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0664/2020
 AT1- C241T C1059T C3037T C11916T C12119T C14408T C18998T A23403G A25121G G25563T G25947C G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_527057
 2020-04-11 2020-09-03
 Australia hCoV-19/Australia/NSW2570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G25621T T28930C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527713
 2020-04-11 2020-09-04
 United States hCoV-19/USA/MN-CDC-6502/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_529669
 2020-04-11 2020-09-10
 United Kingdom hCoV-19/England/PORT-2D3347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17410T C18788T T19839C G21830C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529670
 2020-04-11 2020-09-10
 United Kingdom hCoV-19/England/PORT-2D3383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A496G C3037T C3096T C14408T A20268G G22131A A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529671
 2020-04-11 2020-09-10
 United Kingdom hCoV-19/England/PORT-2D33DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12748C C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530063
 2020-04-11 2020-09-10
 Spain hCoV-19/Spain/MD-LP60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19795T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530235
 2020-04-11 2020-09-11
 Australia hCoV-19/Australia/QLD971/2020/P1
 AT1- C241T C1059T C1392T C3037T G3251T C14408T A23403G G25563T C26625T

EPI_ISL_530236
 2020-04-11 2020-09-11
 Australia hCoV-19/Australia/QLD961/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_534791
 2020-04-11 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2A87/2020
 A1- C241T C3037T G5605A C6573T C14408T A23403G C25528T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_537488
 2020-04-11 2020-09-16
 United States hCoV-19/USA/CA-UCLA-144/2020
 ATTAAAG1- C241T C3037T T4711C C14408T A23403G A28032T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_537513
 2020-04-11 2020-09-16
 United States hCoV-19/USA/CA-UCLA-206/2020
 ATTAAAGGTTTATA1- C241T C379A C1059T C3037T A14041G C14408T C22323T A23403G G25563T C29769T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_538386
 2020-04-11 2020-09-16
 Canada hCoV-19/Canada/ON-OICR-SLB2869/2020
 ATTAAAGGTT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538749
 2020-04-11 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A97B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T G13459T C14408T A23403G G28395T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538778
 2020-04-11 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A97E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538781
 2020-04-11 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9FDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10505G C12623T C14408T G15243T A23403G C27046T GGG28881AAC C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538834
 2020-04-11 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C27600T A28387G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538853
 2020-04-11 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9BBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538861
 2020-04-11 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9A45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3230A C6449T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538885
 2020-04-11 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9A54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11152T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538914
 2020-04-11 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A990C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538923
 2020-04-11 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9C8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T G26458C C28045T C28531T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538924
 2020-04-11 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9AEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29724T C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538929
 2020-04-11 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9C7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T C18657T A20268G G22346K G22992T A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538942
 2020-04-11 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9CA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1659T A2524T C3037T C14408T A20268G A23403G C28854T G29751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541766
 2020-04-11 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286F00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20691T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541775
 2020-04-11 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286DF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4242C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541869
 2020-04-11 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr65/2020
 A1- A2810G C15324T T21644C C29303T AA29902-

EPI_ISL_542504
 2020-04-11 2020-09-23
 United States hCoV-19/USA/TX-HMH-1041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3393T G3901A C6317T C14408T G19518T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542508
 2020-04-11 2020-09-23
 United States hCoV-19/USA/TX-HMH-1052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2676Y C3037T G3901A C6317T C14408T G19518T C23191T A23403G G25563T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_542514
 2020-04-11 2020-09-23
 United States hCoV-19/USA/TX-HMH-1060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542680
 2020-04-11 2020-09-23
 United States hCoV-19/USA/TX-HMH-1374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6527A C10319T C14408T G22344T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545938
 2020-04-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C20320T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547228
 2020-04-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547340
 2020-04-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C7124T C8782T C9561T T18736C C24034T C25433T T26729C C26895T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547416
 2020-04-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T A26392G C27643T C27964T T29710A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548243
 2020-04-11 2020-09-25
 United States hCoV-19/USA/NY-ISMMS-MH001827N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T A13867G C14408T G20580T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_565969
 2020-04-11 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_568687
 2020-04-11 2020-10-02
 Indonesia hCoV-19/Indonesia/JK-EIJK-23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A744G C17676T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568885
 2020-04-11 2020-10-02
 France hCoV-19/France/IHU-0609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T AAGTCATTT686- C1059T A2854G C3037T C5849T G11083T C12880T C14408T A23403G C24099T G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568886
 2020-04-11 2020-10-02
 France hCoV-19/France/IHU-0610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T A1558G C2416T C3037T T6736C G8371T A12334T C14408T C15810T A23403G G25563T G25955A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568887
 2020-04-11 2020-10-02
 France hCoV-19/France/IHU-0611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568888
 2020-04-11 2020-10-02
 France hCoV-19/France/IHU-0612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T A4911G G8371T C11758T C14408T C16816A G18985T C19186T A23403G G25563T G29392T C29625T G29757T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

GWHAORK01000001
 2020-04-11 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P5.2/2020
 C241T C1059T C3037T C14408T A23403G G25217T G25563T

GWHAORR01000001
 2020-04-11 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P3.2R/2020
 C241T C14408T A23403G

MT706241
 2020-04-11 2020-07-03
 United States SARS-CoV-2/human/USA/IA-UW-121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706251
 2020-04-11 2020-07-03
 United States SARS-CoV-2/human/USA/IL-UW-123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6031T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706254
 2020-04-11 2020-07-03
 United States SARS-CoV-2/human/USA/IL-UW-126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T A9685G G12478A T18736C A20645G C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT811015
 2020-04-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0409-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811353
 2020-04-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0761-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1812T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811354
 2020-04-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0762-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T T27504A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811355
 2020-04-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0763-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T T27504A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811363
 2020-04-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0776-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T T5065C C14408T A20268G TTA21991- A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873272
 2020-04-11 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00762/2020
 A1- C241T G1636A C2416T C3037T C14408T A21684T A23403G G25563T A25759G G26526T

MT873306
 2020-04-11 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00767/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T

MT873353
 2020-04-11 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00764/2020
 A1- C241T T833C C1059T C3037T G11083T C14408T C16616T C19263T A23403G G24764T G25563T C27964T

MT967969
 2020-04-11 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6502/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

NMDC60013144
 2020-04-11 2020-06-01
 China hCoV-19/Guangzhou/ID171/2020
 TTAAAGGT2- C241T C3037T C14408T C15324T C19524T A23403G G29868C

NMDC60013148
 2020-04-11 2020-06-01
 China hCoV-19/Guangzhou/ID170/2020
 ATTAAA1- G7A C241T C3037T C14408T C15324T C19524T A23403G T29851A G29868A

NMDC60013186
 2020-04-11 2020-06-01
 China hCoV-19/Guangzhou/ID169/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C14408T C15324T ATCCATTTTTGGGTGTTTATT21975- A23403G G29868C

NMDC60013198
 2020-04-11 2020-06-01
 China hCoV-19/Guangzhou/ID168/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T C15324T T22291- A23403G G24867T G29474A G29868A

EPI_ISL_427445
 2020-04-12 2020-04-18
 United States hCoV-19/USA/WI-UW-138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427461
 2020-04-12 2020-04-18
 United States hCoV-19/USA/WI-UW-154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430010
 2020-04-12 2020-04-24
 United States hCoV-19/USA/OH-OSUP0024/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TGTTCACTTTGTTTGCAACTTGCTGTT25620- G28628T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_430434
 2020-04-12 2020-04-26
 United States hCoV-19/USA/NY-NYUMC407/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430696 MT641751
 2020-04-12 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1329/2020
 C241T T847Y C1059T G2164T C3037T C14408T A23403G G25563T G26959A C27964T

EPI_ISL_433068
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1518/2020
 C241T G285A C3037T C14408T T23371A A23403G

EPI_ISL_433072
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1526/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433075
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1536/2020
 C241T C3037T C11173T C14408T A20268G A23403G C28854T

EPI_ISL_433077
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1541/2020
 C241T C3037T C14408T C15222T A20268G A23403G C28854T

EPI_ISL_433078
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1544/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_433079
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1550/2020
 C241T T2987C C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_433081
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1559/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_433082
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1565/2020
 C241T C3037T C6573T C14408T A23403G C25528T G27715T GGG28881AAC

EPI_ISL_433084
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1568/2020
 C241T C3037T A10874G C14408T A23403G G25429T G25440A T26677C

EPI_ISL_433442
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1424/2020
 G11083T C14805T C22713T G26031T G26144T G28842T

EPI_ISL_433443
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1428/2020
 C8782T C17470T C26088T T26545C T28144C

EPI_ISL_433444
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1431/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_433446
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1433/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433447
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1436/2020
 C241T G362A C3037T G5230T C9661T C14408T T14766C G15327T A20268G A23403G G27021C C28854T

EPI_ISL_433448
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1437/2020
 C241T C1059T C3037T C14408T C15368T A16474G A23403G G25563T G28882T

EPI_ISL_433451
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1448/2020
 C241T C313T C3037T T3268C C14408T A23403G A24902G GGG28881AAC

EPI_ISL_433463
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1510/2020
 C241T T2987C C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_433930
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B1D0/2020
 C241T C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_433931
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B1EF/2020
 C241T C1912T C3037T C6606T C14408T G14580T A20139G A23403G A28254T A29084G

EPI_ISL_433935
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B291/2020
 A187G C241T C3037T C14408T A23403G C23733T

EPI_ISL_433937
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B2BF/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433938
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B2CE/2020
 C241T C3037T C5178T C14408T A23403G C26456T GGG28881AAC

EPI_ISL_433940
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B307/2020
 A187G C241T C3037T C14408T A23403G C24133T

EPI_ISL_433944
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B343/2020
 C241T C3037T C7600T C13730T C14408T A23403G G25429T

EPI_ISL_433945
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B361/2020
 C241T C3037T G8653T C14408T C21772T A23403G GGG28881AAC

EPI_ISL_433949
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B3BC/2020
 C241T G2164A C3037T C3267T C14408T A23403G G26995A GGG28881AAC

EPI_ISL_433951
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B3DA/2020
 G56T C241T C1059T C1437T C3037T C3393T A4731G T11032G T12779C T13006C C14408T A23403G G25563T C25688T

EPI_ISL_433952
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B3E9/2020
 C241T C3037T C13730T C14408T A23403G G25429T

EPI_ISL_433954
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B404/2020
 C241T C1059T C1437T C3037T C3393T G6446T T11032G T12779C T13006C C14408T G17122T A23403G G25563T C25688T G26727T

EPI_ISL_433957
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B431/2020
 C241T C3037T G8137T C9180T C13517T C14408T C19484T C19488T A23403G T27380C G27750C GGG28881AAC G29744C

EPI_ISL_433961
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B48C/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433963
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B4AA/2020
 C241T C3037T C9165T C14408T A23403G GGG28881AAC

EPI_ISL_433965
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B4C8/2020
 A2480G C2558T G11083T C14805T C15194T G26144T C28059T

EPI_ISL_433966
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B4D7/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_433967
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B4E6/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433968
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B4F5/2020
 C241T C3037T C5284T G6476T C13862T C14408T A23403G G28396T C28836T

EPI_ISL_433969
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B501/2020
 C241T C3037T G8653T C14408T C21772T A23403G GGG28881AAC

EPI_ISL_434002
 2020-04-12 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7C175/2020
 A2480G C2558T G4185A C9438T G11083T A11590G C14805T G26144T C29013T

EPI_ISL_434495
 2020-04-12 2020-04-29
 Luxembourg hCoV-19/Luxembourg/LNS0188413/2020
 C241T C2416T C3037T G8371T C14408T G16968A A23403G G25563T A28860T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_434503
 2020-04-12 2020-04-29
 Luxembourg hCoV-19/Luxembourg/LNS0364174/2020
 C241T A618G C3037T C14408T C15324T A23403G C26499G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_434610 MT429186
 2020-04-12 2020-04-30
 United States SARS-CoV-2/human/USA/WI-UW-264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17122T A23403G G25563T G26634T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436448
 2020-04-12 2020-05-06
 India hCoV-19/India/NCDC-4138/2020
 C842M C6310A C6312A G11083T G12685T C13730T C19524T C20429T C23929T AG24389MS C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436449
 2020-04-12 2020-05-06
 India hCoV-19/India/NCDC-4155/2020
 T4941Y C6310A C6312A C7600T G11083T G12685T C13730T A16355G C19524T G22289T T22515Y A23118M C23929T T24380W AG24389MS C28311T A28676M ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_436465 EPI_ISL_437437
 2020-04-12 2020-05-06
 United States hCoV-19/USA/AK-PHL200/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T C4755T C14408T C20148T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_437375
 2020-04-12 2020-05-08
 United States hCoV-19/USA/MN-MDH-472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A2480G C2558T C10908T G11083T C14805T G26144T G28851C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_437376
 2020-04-12 2020-05-08
 United States hCoV-19/USA/MN-MDH-480/2020
 AT1-C C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437377
 2020-04-12 2020-05-08
 United States hCoV-19/USA/MN-MDH-506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A38R C241T C1059T C3037T C14408T A23403G G25563T A27821G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_438147
 2020-04-12 2020-05-12
 United States hCoV-19/USA/WA-S594/2020
 C8782T C10818T C14937T C17747T A17858G C18060T T28144C

EPI_ISL_438148
 2020-04-12 2020-05-12
 United States hCoV-19/USA/WA-S595/2020
 C8782T C10818T C14937T C17747T A17858G C18060T C23127T T28144C

EPI_ISL_438879
 2020-04-12 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2215/2020
 C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T

EPI_ISL_439793
 2020-04-12 2020-05-12
 United Kingdom hCoV-19/England/LIVE-99AA4/2020
 C241T C3037T C14408T C16616T A23403G GGG28881AAC

EPI_ISL_439807
 2020-04-12 2020-05-12
 United Kingdom hCoV-19/England/LIVE-99BED/2020
 C241T C3037T T6844C C14408T A18147G A23403G GGG28881AAC

EPI_ISL_441478
 2020-04-12 2020-05-12
 United Kingdom hCoV-19/England/NOTT-110163/2020
 G1440A G2891A C10507T A28330G

EPI_ISL_441479
 2020-04-12 2020-05-12
 United Kingdom hCoV-19/England/NOTT-110172/2020
 C241T C3037T C7195T G10562A C14408T C16289T A23403G G25429T

EPI_ISL_441991
 2020-04-12 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C6798/2020
 C241T C3037T C14408T C18713T A20323G A23403G GGG28881AAC

EPI_ISL_442043
 2020-04-12 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C9935/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_442524
 2020-04-12 2020-05-12
 United Kingdom hCoV-19/England/CAMB-818D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7162T C9438T G10262A C14408T G17278K T19839C G22632R C22995T A23403G A27669G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_442578
 2020-04-12 2020-05-12
 United Kingdom hCoV-19/England/CAMB-816AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G4185A G11083T C14805T G26144T C29013T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_443051
 2020-04-12 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81BE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6145T C14408T G19900A A23403G G26439T G27882A GGG28881AAC

EPI_ISL_443080
 2020-04-12 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8192A/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G23426C G25563T G29734K

EPI_ISL_445182 MT474138
 2020-04-12 2020-05-15
 United States SARS-CoV-2/human/USA/CA-CZB-1134/2020
 C241T C1059T C3037T C11916T C14408T C18998T C19102T A20898G A23403G G25563T G29540A

EPI_ISL_445701
 2020-04-12 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B3AC/2020
 AT1- G1440A G2891A C9491T A23779G C25669Y G28851T

EPI_ISL_445703
 2020-04-12 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B3CA/2020
 ATTA1- C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_445745
 2020-04-12 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B6A3/2020
 ATTA1- C241Y T1927Y A2480R C2558Y C3037Y C9733Y G11083K C14408Y C14805Y C18693Y C19862Y C21691Y T22691Y A23403R G25297R G26144K C27406Y C28770Y G28883S

EPI_ISL_445746
 2020-04-12 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B6B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T4186C G11801A G12191T C14408T T19839C G22468T A23403G G25552T GGG28881AAC

EPI_ISL_445747
 2020-04-12 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B6C1/2020
 AT1- C241T C3037T T4186C G11801A G12191T C14408T T19839C G22468T A23403G G25552T GGG28881AAC

EPI_ISL_445756
 2020-04-12 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B755/2020
 G1440A G2891A A4870G G25769T T27176G G28851T

EPI_ISL_445761
 2020-04-12 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B7A0/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G23948K T23950Y T27158Y GGG28881AAC

EPI_ISL_445762
 2020-04-12 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B7BF/2020
 ATTAA1- C241T C3037T T5465C G10255T C14408T G21624T A23403G G24102A GGG28881AAC

EPI_ISL_445763
 2020-04-12 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B7CE/2020
 ATTA1- C241T C3037T C9857T C14408T G14580T C16466Y A23403G G28903C

EPI_ISL_446464
 2020-04-12 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-3159E/2020
 ATTAAAGGTTTATACC1- C241T C3037T C5817T A11304G C14408T A23403G GGG28881AAC

EPI_ISL_446476
 2020-04-12 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-316F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1589R C3037T C14408T A23403G G25429T G29474T

EPI_ISL_448161
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2217/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_448163
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2219/2020
 C241T C541T C1059T C3037T G11083T C14408T A16579G C20270T A23403G G25563T C26111T

EPI_ISL_448164
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2221/2020
 C241T C3037T C10798A C13862T C14408T C21304A A23403G C28836T

EPI_ISL_448166
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2223/2020
 C241T C3037T C10798A C13862T C14408T C21304A A23403G C28836T

EPI_ISL_448168
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2226/2020
 C241T C3037T A5040G C14408T A23403G

EPI_ISL_448169
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2227/2020
 ATG1605- C12710T G14707T C26447T A28696T C28854T

EPI_ISL_448170
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2252/2020
 C241T C3037T C6627T C12242T C14408T A23403G GGG28881AAC

EPI_ISL_448171
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2254/2020
 C241T C1059T C1326T C3037T C4551T G7360A C8078G C8320T C14408T C17949T T18351C C18692T G19684T A23403G G25563T G28727T

EPI_ISL_448172
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2278/2020
 C241T C3037T C14408T G16741T A20268G A23403G G25305C

EPI_ISL_448176
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2294/2020
 C241T C3037T C14408T G15438T A20268G A23403G C28708T

EPI_ISL_448234
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/England/NORW-E87CD/2020
 ATTAAAGG1- C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_448242
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/England/NORW-E888E/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448265
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8A2E/2020
 ATT1- C241T C3037T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_448270
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8A79/2020
 ATTAAAGGTTTA1- C241T C3037T G3567A C14408T A23403G GGG28881AAC

EPI_ISL_448285
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8BA3/2020
 C241T C3037T C14408T G15627T A23403G A24232G G25429T

EPI_ISL_448294
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8C73/2020
 ATTAAA1- C241T C3037T A5019R C7765T C9943T C14408T C20178M A23403G C25728T C28657T GGG28881AAC

EPI_ISL_448307
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8D61/2020
 ATTA1- C241T C3037T C12915Y C14408T A20268G A23403G C29870H

EPI_ISL_448415
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110D7E/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448416
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110D8D/2020
 C241T C3037T C9474T C14408T A23403G G25429T C27972T C28045T

EPI_ISL_448846
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/England/SHEF-C4E77/2020
 C241T C2037T C3037T C6033T G13410A C14408T C16960T A23403G GGG28881AAC T29748C

EPI_ISL_448865
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/England/SHEF-C81F2/2020
 C241T C3037T C14408T C16101T A18616G A23403G GGG28881AAC

EPI_ISL_449104
 2020-04-12 2020-05-19
 United Kingdom hCoV-19/England/NORW-E80B3/2020
 ATTA1- C241T C2940T C3037T C14408T C21648T A23403G

EPI_ISL_449890 MT641603
 2020-04-12 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S720/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_449891 MT641542
 2020-04-12 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S721/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_449892 MT641577
 2020-04-12 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S722/2020
 G1401A C8782T C17747T A17858G C18060T G27415A T28144C

EPI_ISL_449914 MT641541
 2020-04-12 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S744/2020
 C241T C379A C1059T C2062T T2244C C3037T C14408T A23403G G25563T

EPI_ISL_449919 MT641586
 2020-04-12 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S749/2020
 G1401A C2675T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_452812 MT558663
 2020-04-12 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0237/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G C24034T G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_453031
 2020-04-12 2020-05-27
 United Kingdom hCoV-19/Scotland/CVR2244/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_453035
 2020-04-12 2020-05-27
 United Kingdom hCoV-19/Scotland/CVR2258/2020
 C241T C3037T C3411T C7047T C14408T G15327T A23403G G26615T G28536T GGG28881AAC

EPI_ISL_454667 MT534317
 2020-04-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1247/2020
 AT1- C4832Y A12557G G13201T C24904T C25916T A27359G

EPI_ISL_454668 MT534318
 2020-04-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1248/2020
 A12557G T15771K C24904T C25916T A27359G

EPI_ISL_454670 MT534320
 2020-04-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1250/2020
 A12557G C13011Y C24904T T25683Y C25916T A27359G G29751T

EPI_ISL_454673 MT534323
 2020-04-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1253/2020
 ATTAAAGGTTTA1- T10129Y A12557G T15771K A15847R T15867K C24904T C25916T A27359G

EPI_ISL_454674 MT534324
 2020-04-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1254/2020
 ATT1- T13Y C492Y A6124R T10129Y A12557G T15771Y G21305R C24904T C25916T A27359G

EPI_ISL_454679 MT534329
 2020-04-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1259/2020
 T13Y A12557G C24904T C25916T A27359G

EPI_ISL_454684 MT534334
 2020-04-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1264/2020
 ATTA1- C3505T T10129Y A12557G C24904T C25916T A27359G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_454686 MT534336
 2020-04-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1266/2020
 AT1- T13Y A12557G C24904T C25916T A27359G

EPI_ISL_455248
 2020-04-12 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2755A C3037T ATGTAGACAATTCTA6561- C14408T C15324T G22616T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_456093
 2020-04-12 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25793T C26111T T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456369
 2020-04-12 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2085/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_456371
 2020-04-12 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2088/2020
 C241T C3037T C4683T C12076T C14408T A23403G G24077T C27046T

EPI_ISL_457059
 2020-04-12 2020-06-02
 United Kingdom hCoV-19/England/EXET-135432/2020
 C241T C3037T C14408T A20268G A23403G C25916T

EPI_ISL_457076
 2020-04-12 2020-06-02
 United Kingdom hCoV-19/England/EXET-13560F/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457085
 2020-04-12 2020-06-02
 United Kingdom hCoV-19/England/EXET-1356A5/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G C28311A GGG28881AAC

EPI_ISL_457086
 2020-04-12 2020-06-02
 United Kingdom hCoV-19/England/EXET-1356B4/2020
 C241T C3037T C5005T C10156T C14408T A23403G GGG28881AAC

EPI_ISL_457087
 2020-04-12 2020-06-02
 United Kingdom hCoV-19/England/EXET-1356D2/2020
 C241T C3037T C9603T C14408T A20268G G21372C C22295T A23403G C25318T G29734C

EPI_ISL_457088
 2020-04-12 2020-06-02
 United Kingdom hCoV-19/England/EXET-1356E1/2020
 C241T C678T C3037T C14408T G18859T G21624T A23403G GGG28881AAC

EPI_ISL_457097
 2020-04-12 2020-06-02
 United Kingdom hCoV-19/England/EXET-1357A2/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457217
 2020-04-12 2020-06-02
 United Kingdom hCoV-19/England/EXET-1362EC/2020
 C241T G2407A C3037T C14408T A22473G A23403G GGG28881AAC

EPI_ISL_457305
 2020-04-12 2020-06-02
 United Kingdom hCoV-19/England/NORT-28A558/2020
 C241T C3037T G10097A T13216G C14408T A15954G A19960G A23403G C23731T GGG28881AAC

EPI_ISL_457702
 2020-04-12 2020-06-02
 Oman hCoV-19/Oman/205028718/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G T28135C GGG28881AAC G29024T A29865G TGAC29867CTTG A29874G AAA29876GCC AAAAAAAAAAAAAAAAAAAAAAAA29880C

EPI_ISL_458070
 2020-04-12 2020-06-03
 India hCoV-19/India/CCMB_K272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C6312A G11083T C13730T CT17762GG A17959G C19524T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458085
 2020-04-12 2020-06-03
 Italy hCoV-19/ITALY/SardiniaNuoroCOV28/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T A13703G C14408T C15017T A23403G C27046T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_458243
 2020-04-12 2020-06-04
 United States hCoV-19/USA/CA-SR0359/2020
 C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_460641
 2020-04-12 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460934
 2020-04-12 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461235
 2020-04-12 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T16515C A23403G G27074A C29095T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461236
 2020-04-12 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C8290T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_463007
 2020-04-12 2020-06-09
 Taiwan hCoV-19/Taiwan/NTU29/2020
 T514C ATG1605- C6582T C10626T G12661A C12747T C16247T C16762T C22323T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463954
 2020-04-12 2020-06-11
 Canada hCoV-19/Canada/QC_AY1/2020
 C241T C3037T C12974T C14408T C15324T A23403G C25433T

EPI_ISL_464007
 2020-04-12 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0063/2020
 C241T C313T C3037T C14408T C14724T A23403G G25166C GGG28881AAC G29781T

EPI_ISL_464022
 2020-04-12 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0070/2020
 C241T C313T C3037T C14408T C14724T A23403G C28331T GGG28881AAC G29781T

EPI_ISL_466401
 2020-04-12 2020-06-11
 United Kingdom hCoV-19/England/201620058/2020
 A187G C241T C3037T A5650G C14408T C14741T C18620Y A23403G

EPI_ISL_466410
 2020-04-12 2020-06-11
 United Kingdom hCoV-19/England/20162011104/2020
 G360R T1368C A2480G C2558T C6990T C7011Y G11083T G11405R G14342K C14805T C19895T C21772Y C22075Y C23707Y G25049B G26144T C28869T

EPI_ISL_466472
 2020-04-12 2020-06-11
 United Kingdom hCoV-19/England/20164072104/2020
 C241T AAGTCATTT686- C2523Y C3037T G11083K A12916R C14408T G16943K A17066R A23403G C25782T A26530G G28739T

EPI_ISL_468315
 2020-04-12 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-500/2020
 C241T G558K C3037T G3564K G13571K C14408T C18348T A23403G C24904T G25088T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_468368 MT628105
 2020-04-12 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1354/2020
 AT1- C241T C3037T C5467T C8389T G8785A G9479K C14408T A23403G G25563T

EPI_ISL_468504 MT628227
 2020-04-12 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C13372Y C14408T G22899K A23403G A28779G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468505 MT628228
 2020-04-12 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1573/2020
 C241T C3037T C13372Y C14408T A23403G A28779G GGG28881AAC

EPI_ISL_468860
 2020-04-12 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2151/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_468865
 2020-04-12 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2163/2020
 C241T G2273A C3037T C14408T A23403G ATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGT27579- GGG28881AAC

EPI_ISL_468885
 2020-04-12 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2137/2020
 C241T C3037T AAT6506- C14408T A23403G GGG28881AAC

EPI_ISL_468895
 2020-04-12 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2152/2020
 C241T C3037T C10543Y C14119Y C14408T A23403G GGG28881AAC

EPI_ISL_468912
 2020-04-12 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2139/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_468921
 2020-04-12 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2166/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_468940
 2020-04-12 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2129/2020
 C241T C635Y C900Y C3037T C6198Y C6696T C13517Y C14408T A20268G C22987T A23403G C28253Y C29743Y

EPI_ISL_468948
 2020-04-12 2020-06-17
 Spain hCoV-19/Spain/Donostia-San_Sebastian2170/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_469925
 2020-04-12 2020-06-18
 United Kingdom hCoV-19/England/SHEF-10B26BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25276T C26224T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469928
 2020-04-12 2020-06-18
 United Kingdom hCoV-19/England/SHEF-10B2547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18713T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_473821
 2020-04-12 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5441/2020
 C241T C3037T G3893A C8730T T12370A C14408T C16289T A23403G G25429T C25521T

EPI_ISL_473822
 2020-04-12 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5442/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_473823
 2020-04-12 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5443/2020
 C241T C2841T C3037T C10798A C13862T C14408T C16726T C18486T A23403G C28836T

EPI_ISL_473826
 2020-04-12 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5667/2020
 C241T C3037T C10798A C13862T C14408T C23327T A23403G C27883T C28836T

EPI_ISL_473827
 2020-04-12 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5668/2020
 C241T C3037T G3304T T13717A C14408T A23403G GGG28881AAC

EPI_ISL_473828
 2020-04-12 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5669/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_473829
 2020-04-12 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5671/2020
 G1440A G2891A C10507T C26858T

EPI_ISL_473830
 2020-04-12 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5672/2020
 C241T C1223T C3037T A3415G C10798A C13862T C14408T C23327T A23403G C27883T C28836T

EPI_ISL_473831
 2020-04-12 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5673/2020
 C241T C3037T C10798A C13862T C14408T C23327T A23403G C27883T C28836T

EPI_ISL_473838
 2020-04-12 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5710/2020
 C241T C3037T C10798A C13862T C14408T C23327T A23403G C27883T C28836T

EPI_ISL_473839
 2020-04-12 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5711/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_473840
 2020-04-12 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5712/2020
 C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_473841
 2020-04-12 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5713/2020
 C241T C3037T C14408T G18255T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_475615
 2020-04-12 2020-06-23
 United States hCoV-19/USA/CA-CSMC137/2020
 C103T C241T C1059T C3037T G3340T C4596T C14408T A23403G G25563T C27577T G27613A

EPI_ISL_475617
 2020-04-12 2020-06-23
 United States hCoV-19/USA/CA-CSMC139/2020
 C241T C379A C1059T C1648T C3037T C14408T A18444C A23403G G25563T

EPI_ISL_475619
 2020-04-12 2020-06-23
 United States hCoV-19/USA/CA-CSMC140/2020
 C241T C1059T C3037T C12651T C14408T C21635T A23403G G25563T

EPI_ISL_476076
 2020-04-12 2020-06-25
 Hungary hCoV-19/Hungary/UD-7729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7165T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477876
 2020-04-12 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A C18171A A23403G G25563T G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477877
 2020-04-12 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C26447T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477881
 2020-04-12 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6636T C12880T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477883
 2020-04-12 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C813A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477884
 2020-04-12 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C18555T C21304A A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477885
 2020-04-12 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7047T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477886
 2020-04-12 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C26447T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477887
 2020-04-12 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6371G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477889
 2020-04-12 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G28739T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477894
 2020-04-12 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G C26270T C28708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477895
 2020-04-12 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21304A A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477896
 2020-04-12 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C26447T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477907
 2020-04-12 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G20134T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478986
 2020-04-12 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0FF3/2020
 C241T C1884T C3037T C6723T C14408T A23403G GGG28881AAC

EPI_ISL_479618
 2020-04-12 2020-06-30
 Italy hCoV-19/Italy/FVG-ICGEB_bal16/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2106T C3037T C13620T C14408T C15240T G20398A A23403G T26106C A26530G AAAAAAAAAAAAA29891-

EPI_ISL_479619
 2020-04-12 2020-06-30
 Italy hCoV-19/Italy/FVG-ICGEB_atr18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2106T C3037T C13620T C14408T C15240T G20398A A23403G T26106C A26530G AA29885TC A29888C AAAAA29890TGGGG A29896T AA29898GC AAA29901-

EPI_ISL_479767
 2020-04-12 2020-07-01
 United States hCoV-19/USA/FL-Miami-06_UMTL-A5QM/2020
 AT1CCAG A4G GGT7CA T10A C241T C1059T C3037T C3874T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_480220
 2020-04-12 2020-07-01
 Japan hCoV-19/Japan/PG-0587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C313T C3037T C14408T A23403G G26730A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_481092
 2020-04-12 2020-07-02
 Spain hCoV-19/Spain/Madrid_COV004943/2020
 C241T C3037T C12484T C14408T A20268G A23403G G24197T G29734C

EPI_ISL_481538
 2020-04-12 2020-07-03
 Finland hCoV-19/Finland/12A22SVI/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C29466T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481539
 2020-04-12 2020-07-03
 Finland hCoV-19/Finland/12A44SVI/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481543
 2020-04-12 2020-07-03
 Finland hCoV-19/Finland/12A53SVI/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481544
 2020-04-12 2020-07-03
 Finland hCoV-19/Finland/12A55SVI/2020
 C241T C3037T G4960T C14408T G18040T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481545
 2020-04-12 2020-07-03
 Finland hCoV-19/Finland/12A55SVIIB/2020
 C241T C589T C1059T C3037T C14408T A23403G G24368T G25494T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481546
 2020-04-12 2020-07-03
 Finland hCoV-19/Finland/12A63SVI/2020
 C241T C1059T C3037T C9565T C10868T A13653G C14408T A23403G G24368T G25563T G29024T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481547
 2020-04-12 2020-07-03
 Finland hCoV-19/Finland/12A67SVIIC/2020
 C241T C1059T C3037T C6638T C7735T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481548
 2020-04-12 2020-07-03
 Finland hCoV-19/Finland/12A70SVIIC/2020
 C241T C1059T G1738T C3037T C12008T C14408T A23403G G24368T G25563T C29466T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482338
 2020-04-12 2020-07-03
 United States hCoV-19/USA/OR-PROV-058/2020
 C8782T C17747T A17858G C18060T T28144C G29688T

EPI_ISL_482343
 2020-04-12 2020-07-03
 United States hCoV-19/USA/OR-PROV-064/2020
 A4236G G11083T C14805T C22986T T25655C G26144T

EPI_ISL_482344
 2020-04-12 2020-07-03
 United States hCoV-19/USA/OR-PROV-065/2020
 C241T C3037T C3176T C11563T C14408T C18877T A23403G G25563T

EPI_ISL_482345
 2020-04-12 2020-07-03
 United States hCoV-19/USA/OR-PROV-066/2020
 A4236G G7100T G11083T C14805T C25276T T25655C G26144T

EPI_ISL_483346
 2020-04-12 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0767-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T24076C C27630T C28854T

EPI_ISL_483600
 2020-04-12 2020-07-08
 Singapore hCoV-19/Singapore/577/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C6310A C6312A G11083T C13730T C19524T C23929T C26882T C28311T AAAAAAAAAAAA29892-

EPI_ISL_484419
 2020-04-12 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D17C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T A4916C G11083T C14805T A21081G C23603T G26144T C26681T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484421
 2020-04-12 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D180E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4680T C12484T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484422
 2020-04-12 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D181D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A23923C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484430
 2020-04-12 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D18B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T C13051T C21707T G28899A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484570
 2020-04-12 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C8157T C12710T A12886G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484572
 2020-04-12 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C15017T A21006T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484574
 2020-04-12 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G G28881T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486291 MT750460
 2020-04-12 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2047/2020
 AT1- C4776T C8782T G11083K C13665Y C17747T A17858G C18060T T25902W T25908W G25913S G28086T T28144C T29867Y

EPI_ISL_487457
 2020-04-12 2020-07-14
 Mali hCoV-19/Mali/M002698/2020
 ATTAAAGGTTTATACCTT1- C8782T G22468T C25904T T28144C G28878A CCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29802-

EPI_ISL_487459
 2020-04-12 2020-07-14
 Mali hCoV-19/Mali/M002703/2020
 ATTAAAGGTTTATAC1- C241T C1968T C3037T C11747T C14408T C15324T G15743A C22290T A23403G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_487460
 2020-04-12 2020-07-14
 Mali hCoV-19/Mali/M002704/2020
 ATTAAAGGTTTATACC1- C8782T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_487461
 2020-04-12 2020-07-14
 Mali hCoV-19/Mali/M002707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T16062C C16658T C17883T G18973T T21480G T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487908
 2020-04-12 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487973
 2020-04-12 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T7912C -11075TTT G11083T G11417T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488038
 2020-04-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-2964D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C2644T C3037T C14408T A23403G G23948T G25687T C26313T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488043
 2020-04-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-2964F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2244C C3037T C4002T C9474T G10097A C13536T C14408T G23282T A23403G C23731T TTTTAAAGTTTCCATTTGGAATCTTGA27264- T28238C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488055
 2020-04-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-295F98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T C17676T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488232
 2020-04-12 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F50B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17249T G17722T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488321
 2020-04-12 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488358
 2020-04-12 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241Y G1440R G2891R C3037Y C5907Y T6283Y C14408Y T19839Y A23403R C24382Y C26681Y G28851K GGG28881RRS CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488417
 2020-04-12 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F41D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- C2106T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488425
 2020-04-12 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17249T G17722T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491152
 2020-04-12 2020-07-16
 Oman hCoV-19/Oman/16908/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T C14408T C16726T C18877T A20458G C22444T A23403G G25563T C26735T C28854T G29513T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491159
 2020-04-12 2020-07-16
 Oman hCoV-19/Oman/15253/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2836T C3037T C14408T C16726T C18877T C22444T A23403G G25563T C26735T C28854T G29513T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491512
 2020-04-12 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G362A C3037T G5230T C14408T T14766C A20268G A23403G G27021C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491539
 2020-04-12 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222Y C241T C3037T C3543T C7039T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491562
 2020-04-12 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10874G C14408T A23403G G25429T G25440A C25916T T26677C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491590
 2020-04-12 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T G29543C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491606
 2020-04-12 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G149K C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491624
 2020-04-12 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T14079C C14408T T15114C TTTTGGGTG21981- A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492521
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492525
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1305AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083K C14408T C15342T C16260T G17944T A23403G C29274Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492528
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13066E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2509Y T9352C G11083T C14805T G26144T G27201T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492529
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13075C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5512T C14408T C14925Y G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492530
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1305F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492531
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13077A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2706T A7025G C9724T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492537
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13067D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T9352C G11083T C14805T G26144T G27201T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492540
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13058F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3487A C14408T A21405T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492549
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492551
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1307E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097R C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492553
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1306E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A18179G A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492554
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13073E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5512T C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492558
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492571
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13083B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492587
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13080E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13436T C14408T C16733T T19869C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492589
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3692T C5512T C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492595
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T G25681A G26365T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492597
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13081D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2857S C3037T G10097A C10369T C14408T A23403G C23731T G26832K GGG28881AAC G29779K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492598
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3692T C5512T C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492611
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6617A C8299T C9724T C14408T C19185T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492612
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1306F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T T10676C C14408T C16393T A23403G C26256T C27046T C27765Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492613
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T T10676C C14408T C16393T A23403G C26256T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492621
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1307A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492622
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1307C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4386G T5152A C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492632
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13065F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A15267T A23403G A26530G G28079K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492637
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1306C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T9352C G11083T C14805T G26144T G27201T C28383Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492641
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1307D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492643
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1307F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492653
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T TAT9858- C14408T C18464T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492654
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13084A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492656
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C14408T A23403G G25563T G29705T C29738T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492658
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13270Y C14408T C20405Y A23403G G25455K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492667
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1305DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492674
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13069B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23014G A23403G GGG28881AAC C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492680
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G A5128G C5826T C8090T C10789T G11083T C29171T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492696
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13076B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5512T C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492698
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13059E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A873G C3037T T3877A G7038A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492702
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1306D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T9352C G11083T C14805T G26144T G27201T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492714
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13074D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5512T C13381T C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492717
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1305CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T G15672T A23403G C23731T G25112K G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492731
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28087T GGG28881AAC T29633C G29688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492734
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1305BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11074T T13552C C14408T C21242T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492737
 2020-04-12 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13068C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25523T C27263A C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_496554
 2020-04-12 2020-07-24
 India hCoV-19/India/BJMC_965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C313T C3037T C5700A C14408T C16726T A23403G GGG28881AAC C29541T TG29867- A29869G

EPI_ISL_501621
 2020-04-12 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260EFFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T C12367T C14408T C21575T A23403G G25767T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508930
 2020-04-12 2020-08-04
 France hCoV-19/France/ARA23943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508932
 2020-04-12 2020-08-04
 France hCoV-19/France/ARA24115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTG1- C241T C3037T C14408T C15324T A20262G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509452 MT827214
 2020-04-12 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0048/2020
 ATTAAAGG1- TA11AT C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_511499
 2020-04-12 2020-08-08
 Portugal hCoV-19/Portugal/PT0949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G G25552T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511500
 2020-04-12 2020-08-08
 Portugal hCoV-19/Portugal/PT0950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G7911T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512502
 2020-04-12 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16970F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C13694Y C14408T C23029Y A23403G GGG28881AAC

EPI_ISL_513162
 2020-04-12 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH511/2020
 C241T A6613G C14408T A23403G G25563T C26735T

EPI_ISL_513163
 2020-04-12 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH513/2020
 C241T C3037T C14408T C22444T A23403G G25563T C26735T

EPI_ISL_514227
 2020-04-12 2020-08-14
 Peru hCoV-19/Peru/INS-042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C18568T A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_514476
 2020-04-12 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D1992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17410T C18788T T19839C G21830C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516646
 2020-04-12 2020-08-21
 Peru hCoV-19/Peru/INS-046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C18568T A23403G A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_516685
 2020-04-12 2020-08-21
 Peru hCoV-19/Peru/INS-051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A A10323G C13536T C14408T A23403G C23731T GGG28881AAC G29179T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_517686
 2020-04-12 2020-08-24
 Peru hCoV-19/Peru/INS-056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T C15848T A23403G C23731T G27478T GGG28881AAC G29179T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_517959
 2020-04-12 2020-08-24
 Peru hCoV-19/Peru/INS-048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T G4657T C5907T C9264Y C14408T C15277T A21917G A23403G C25872T A26530G ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_525423
 2020-04-12 2020-08-29
 Oman hCoV-19/Oman/16904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C2836T C3037T C16726T C22444T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_525578
 2020-04-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-10715-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525672
 2020-04-12 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-45057-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C27970T TGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29793-

EPI_ISL_526459
 2020-04-12 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB1491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T G29543C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527058
 2020-04-12 2020-09-03
 Australia hCoV-19/Australia/NSW2571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1629T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527370
 2020-04-12 2020-09-03
 Singapore hCoV-19/Singapore/861/2020
 ATTAAAGGTTTATACCT1- C5628Y C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_527372
 2020-04-12 2020-09-03
 Singapore hCoV-19/Singapore/863/2020
 ATTAAAGGTTTA1- C6310A C6312A C8772Y G11083T C13730T G16720A C19524T A21548R C23929T C24748T C28311T AAAAAAAAAAAA29892-

EPI_ISL_527715
 2020-04-12 2020-09-04
 United States hCoV-19/USA/MN-CDC-6510/2020
 C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527863
 2020-04-12 2020-09-05
 Brazil hCoV-19/Brazil/SP-287/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A3481T C14408T A23403G G25088T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_530064
 2020-04-12 2020-09-10
 Spain hCoV-19/Spain/MD-LP61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11704T C14408T A20268G A23403G C28915T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534787
 2020-04-12 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2A3C/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T G11250A C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535002
 2020-04-12 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4C43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T T18398C A23403G G24781T T28031C G28580A GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_538127
 2020-04-12 2020-09-16
 Spain hCoV-19/Spain/AN-CSIC-98001687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G12385T C14408T C16952T T17126C A20268G A23403G G27754T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_538141
 2020-04-12 2020-09-16
 Spain hCoV-19/Spain/AN-CSIC-98001736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_538752
 2020-04-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A974E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538764
 2020-04-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538788
 2020-04-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A93FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C367T G805A C1884T C2416T C3037T C14408T A23403G C25508T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538790
 2020-04-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9B8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4232T C4795T C8841T A10505G C10507T C12623T T13678C C14408T A23403G C27046T GGG28881AAC A28910C C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538803
 2020-04-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1778C C3037T C3990T C8389T G10805A C14408T A23403G C23453T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538839
 2020-04-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9C6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1348A C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538846
 2020-04-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9C21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C21699T A23403G C23731T C27970T GGG28881AAC G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538855
 2020-04-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9B51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A648R C2388Y C3037T C8683Y G11230K C14408T C18657Y A20268R G21724K C22326Y G22992K A23403G G23587S C27442Y C28854Y GGG28881RRS CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538858
 2020-04-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9BAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4795T A10505G C10507T C12623T T13678C C14408T A23403G G25947C C27046T GGG28881AAC A28910C C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538860
 2020-04-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9B7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1348A C3037T C14408T C18657T A20268G A23403G C27442T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538867
 2020-04-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9AFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C364T C8782T G11230T C23536T T28144C G28167A G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538874
 2020-04-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9BE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A22169G A23403G C23575T G23587C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538878
 2020-04-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A992A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2885R C3037T C13499Y C14408T T17672C A23403G C27046T A27510G C28312T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538918
 2020-04-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9491T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538937
 2020-04-12 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9B60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4795T A10505G C10507T C12623T T13678C C14408T A23403G C27046T GGG28881AAC A28910C C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542621
 2020-04-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C583T C1059T C3037T C14408T C19983T A23403G G25563T G25922T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542660
 2020-04-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G10958T C11514T C14408T A23403G G25563T C27964T G28986T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542668
 2020-04-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542675
 2020-04-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565988
 2020-04-12 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C14408T G16647T A17289G A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_568702
 2020-04-12 2020-10-02
 Kenya hCoV-19/Kenya/C571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G11230T C12213T T28144C G28167A G28878A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568889
 2020-04-12 2020-10-02
 France hCoV-19/France/IHU-0615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T G17572T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568890
 2020-04-12 2020-10-02
 France hCoV-19/France/IHU-0617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C13476T C14408T A23403G G25563T C27970T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568891
 2020-04-12 2020-10-02
 France hCoV-19/France/IHU-0618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T T12720C C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568892
 2020-04-12 2020-10-02
 France hCoV-19/France/IHU-0619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568893
 2020-04-12 2020-10-02
 France hCoV-19/France/IHU-0620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C5407T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568894
 2020-04-12 2020-10-02
 France hCoV-19/France/IHU-0621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568895
 2020-04-12 2020-10-02
 France hCoV-19/France/IHU-0622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15277T C15324T A23403G G29751C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568896
 2020-04-12 2020-10-02
 France hCoV-19/France/IHU-0623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2037T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568897
 2020-04-12 2020-10-02
 France hCoV-19/France/IHU-0624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T T26773C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT477861
 2020-04-12 2020-05-14
 United States SARS-CoV-2/human/USA/AK200/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T C4755T C14408T C20148T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT622321
 2020-04-12 2020-06-16
 Italy SARS-CoV-2/human/ITA/Sardinia Nuoro/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T A13703G C14408T C15017T A23403G C27046T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT627752
 2020-04-12 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S595/2020
 ATTAAAG1- C8782T C10818T C14937T C17747T A17858G C18060T C23127T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627758
 2020-04-12 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S594/2020
 ATTAAAGGTTTAT1- C8782T C10818T C14937T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT706266
 2020-04-12 2020-07-03
 United States SARS-CoV-2/human/USA/IL-UW-138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706282
 2020-04-12 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810981
 2020-04-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0359-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811358
 2020-04-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0767-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C27630T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873160
 2020-04-12 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00212/2020
 G105T C241T C3037T C14408T C18877T G22104T A23403G G25563T

MT873166
 2020-04-12 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00774/2020
 ATTA1- C241T C2416T C3037T C6347T T10216C C14408T A23403G G25563T G26233T

MT873195
 2020-04-12 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00213/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873263
 2020-04-12 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00779/2020
 ATT1- C241T C2416T C3037T T10216C C14408T A23403G G25563T G26233T

MT873417
 2020-04-12 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00770/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T A27821G

MT873471
 2020-04-12 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00775/2020
 ATTAAA1- C241T C2416T C3037T C14053T C14408T A23403G G25563T G26233T

MT873500
 2020-04-12 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00773/2020
 ATTAA1- C241T C1059T C3037T C6651T C14408T A23403G G25563T

MT967970
 2020-04-12 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6510/2020
 C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_427391
 2020-04-13 2020-04-18
 Turkey hCoV-19/Turkey/GLAB-CoV008/2020
 C241T C2113T C2997T C3037T C7765T C14408T C17690T C18877T A23403G G25563T

EPI_ISL_427427
 2020-04-13 2020-04-18
 United States hCoV-19/USA/WI-UW-120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G T27348C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427437
 2020-04-13 2020-04-18
 United States hCoV-19/USA/WI-UW-130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427441
 2020-04-13 2020-04-18
 United States hCoV-19/USA/WI-UW-134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_427450
 2020-04-13 2020-04-18
 United States hCoV-19/USA/WI-UW-143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T A9685G G12478A T18736C A20645G C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430099
 2020-04-13 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5942S/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_430358
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC331/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430416
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC389/2020
 C241T C1059T C3037T C14408T C21855T A23403G G25563T

EPI_ISL_430417
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC390/2020
 C241T C1059T C3037T C6997T C14408T A23403G G25563T

EPI_ISL_430418
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC391/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430419
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC392/2020
 C241T C1059T C3037T C11916T A13758G C14408T C18998T A23403G C23854T C24334T G25563T G29540A

EPI_ISL_430420
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC393/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T T27546C G29540A

EPI_ISL_430421
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC394/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28077T

EPI_ISL_430422
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC395/2020
 C241T C3037T C9474T C14408T G22104T A23403G

EPI_ISL_430424
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC397/2020
 C241T C2416T C3037T C11651T C14408T A23403G G25563T

EPI_ISL_430425
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC398/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26834T

EPI_ISL_430426
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC399/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430427
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC400/2020
 C241T C1059T C3037T C11124T C14408T T23036C A23403G G25563T A27821G T28820A G28960T

EPI_ISL_430428
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NJ-NYUMC401/2020
 C241T C1059T C3037T C14408T A23403G C23635T G25563T

EPI_ISL_430429
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC402/2020
 C241T C1059T C3037T C5310T C11979T C14408T C21843T A22525G A23403G G25563T

EPI_ISL_430430
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC403/2020
 C241T C1059T G2249A C3037T C10851T C14408T A23403G G25563T C28708T

EPI_ISL_430431
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC404/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_430432
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC405/2020
 C241T C1059T C3037T C8090T C13585A C14408T C16260T A23403G G25563T C28821A

EPI_ISL_430433
 2020-04-13 2020-04-26
 United States hCoV-19/USA/NY-NYUMC406/2020
 C241T C3037T T6274C C14408T G21724T A23403G GGG28881AAC C29370T

EPI_ISL_430682 MT641752
 2020-04-13 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1334/2020
 C1076T G1397A C9491T G11083T C21658T C27964T T28688C C29420T G29742T

EPI_ISL_430698 MT641754
 2020-04-13 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1336/2020
 C64Y C241T G663K C2942M C3037T C5597Y T6199Y G6323R G7065R C7875Y G8102T A8763W C8947Y T10963Y G12331R C12633Y G12653K C14408T A23403G C24223Y C24378Y C28651Y C28740Y GGG28881AAC

EPI_ISL_433069
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1519/2020
 C241T C3037T G10097A C14408T A23403G C23731T C25160T G28580T GGG28881AAC

EPI_ISL_433073
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1529/2020
 C241T C2706T C3037T A3911G A5257G C14408T A23403G C26028T

EPI_ISL_433080
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1554/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433083
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1566/2020
 C241T C3037T C14408T A23403G G24390T C25433T G29440T

EPI_ISL_433085
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1580/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433087
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1582/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27371T T28930C

EPI_ISL_433088
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1583/2020
 A187G C241T C3037T A9634T C14408T A23403G

EPI_ISL_433449
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1444/2020
 C241T C3037T A5136G C14408T A20268G A23403G C28854T

EPI_ISL_433452
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1450/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_433453
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1452/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_433454
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1453/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_433462
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1507/2020
 C241T G2883A C3037T C3619T C14408T A20268G A23403G G29734C

EPI_ISL_433464
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1511/2020
 C241T C3037T A3911G A5257G C14408T A23403G C26028T

EPI_ISL_433953
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B3F8/2020
 C241T T2800A C3037T C14408T T19839C A23403G C24919T G27777T GGG28881AAC

EPI_ISL_433956
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B422/2020
 C103T C241T C3037T G6352T C14408T C23086T A23403G C27046T GGG28881AAC

EPI_ISL_433958
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B440/2020
 C241T C1059T C3037T C14408T A23403G G23426C G25563T

EPI_ISL_433970
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B510/2020
 C241T C3037T C14408T A23403G C25831T GGG28881AAC

EPI_ISL_433971
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B52F/2020
 C241T C3037T A12091G C14408T A23403G GGG28881AAC

EPI_ISL_433975
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B56B/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433976
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7BFD6/2020
 C241T C3037T C7423T C8025T C14408T A20268G A23403G G29734C

EPI_ISL_433999
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7C148/2020
 C241T C3037T A10983G C14408T A23403G G25429T

EPI_ISL_434001
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7C166/2020
 C241T C3037T C8025T C14408T A20268G A23403G G29734C

EPI_ISL_434035
 2020-04-13 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7C39D/2020
 C241T G2885T C3037T C14408T A23403G G25429T G26458C C28045T C29253T

EPI_ISL_434502
 2020-04-13 2020-04-29
 Luxembourg hCoV-19/Luxembourg/LNS5807524/2020
 C241T C3037T C5457T G11083T C14408T C15324T C18828T A23403G AAA29901-

EPI_ISL_435037
 2020-04-13 2020-05-01
 United States hCoV-19/USA/LA-EVTL04/2020
 C241T C1059T C3037T C10319T C12781T C14408T C16694T T18402C A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_435038
 2020-04-13 2020-05-01
 United States hCoV-19/USA/LA-EVTL05/2020
 C241T C1059T C3037T C14408T A16592G A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_435049 MT435079
 2020-04-13 2020-05-02
 India SARS-CoV-2/human/IND/GBRC2/2020
 C241T C3037T C14408T A23403G

EPI_ISL_435050 MT435080
 2020-04-13 2020-05-02
 India SARS-CoV-2/human/IND/GBRC3/2020
 C241T C3037T C13994T A14041C C14408T A23403G

EPI_ISL_435051 MT435081
 2020-04-13 2020-05-02
 India SARS-CoV-2/human/IND/GBRC4/2020
 C241T C1059T C3037T C14408T C15371T A23403G G25563T G28221T G28371T

EPI_ISL_435504
 2020-04-13 2020-05-05
 United States hCoV-19/USA/NY-NYUMC437/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435686
 2020-04-13 2020-05-05
 Singapore hCoV-19/Singapore/81/2020
 ATTAAAGG1- G2035T C6310A C6312A A8420R G11083T C13730T C19524T A21650M C23929T G27798T C28311T C28758T G28851K AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_436450
 2020-04-13 2020-05-06
 India hCoV-19/India/NCDC-4189/2020
 C203T C6312A T8022K G11083T C13730T G16221A G16377T A21792T C23929T C27208Y C28311T AAAAAAAAAAAAAA29890-

EPI_ISL_436451
 2020-04-13 2020-05-06
 India hCoV-19/India/NCDC-4205/2020
 G1820A T4941Y G5657T C6310A C6312A T8022K G11083T C13730T A16281R C19524T C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436454
 2020-04-13 2020-05-06
 India hCoV-19/India/NCDC-4475/2020
 C241T C3037T T8022K C8595T C14408T A15435R T17415C A23403G AG24389MS G26709R ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_436455
 2020-04-13 2020-05-06
 India hCoV-19/India/NCDC-4476/2020
 C241T C842M C3037T T8022K C14408T A23403G AG24389MS AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_436591 MT706405
 2020-04-13 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A A10070C C21364T G25507A C28849T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436592 MT706406
 2020-04-13 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T C7728T C14937T C20148T C21637T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436593 MT706407
 2020-04-13 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T C14937T C20148T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436594 MT706408
 2020-04-13 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A A10070C C28849T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436595 MT706409
 2020-04-13 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3692T A4838G C7420T C14937T C20148T C26907G C28836T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436596 MT706410
 2020-04-13 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3692T A4838G C6445T C7420T C9163T C12459T C14937T C20148T C25916T C26907G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436597 MT706411
 2020-04-13 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A A10070C C28849T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436598 MT706412
 2020-04-13 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C379A C1059T T2058C C3037T G5539A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437065 MT449656
 2020-04-13 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1065/2020
 ATTAAA1- A14940G -26079CTT AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_437209
 2020-04-13 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0008/2020
 C241T C3037T C8344T C14408T A23403G G25593C

EPI_ISL_437227
 2020-04-13 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0028/2020
 C241T C1059T C3037T C13536T C14408T A23403G G25563T C29311T

EPI_ISL_437296
 2020-04-13 2020-05-08
 Germany hCoV-19/Germany/BAV-MVP0106/2020
 C241T C1059T C3037T C13536T C14408T A23403G G25563T C29311T

EPI_ISL_437378
 2020-04-13 2020-05-08
 United States hCoV-19/USA/MN-MDH-513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T TTA516- C1059T C3037T C14408T T19527C A23403G G25563T C27964T C28099T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_437379
 2020-04-13 2020-05-08
 United States hCoV-19/USA/MN-MDH-517/2020
 AT1- C241T C1059T C3037T A5309G C6606T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437387 MT450873
 2020-04-13 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0171/2020
 ATTAAA1- C241T C1059T C3037T C14408T G20991T A23403G G25563T C25585T

EPI_ISL_437388 MT450874
 2020-04-13 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T11798C C14408T G20991T A23403G G25563T C25585T C29095T C29870M

EPI_ISL_437389 MT450875
 2020-04-13 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0173/2020
 ATT1- C241T C1059T C3037T T11798C C14408T G20991T A23403G G25563T C25585T C29095T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_437390 MT450876
 2020-04-13 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0174/2020
 ATT1- C241T C1059T C3037T C14408T G20991T A23403G G25563T C25585T

EPI_ISL_437391 MT450877
 2020-04-13 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T G20991T A23403G G25563T C25585T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_437392 MT450878
 2020-04-13 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0176/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T G20991T A23403G G25563T C25585T A29865R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_437419 MT450905
 2020-04-13 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T C29870M

EPI_ISL_437424 MT450910
 2020-04-13 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C10377T C12073T C14408T A23403G G25563T C29870A

EPI_ISL_437766 MT482113
 2020-04-13 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0127/2020
 ATTAAAGGTTT1- C241T C1059T C3037T A5337G C9857T C10319T A12286G C12729T C13665T C14408T A23403G G25563T C27964T C29870A

EPI_ISL_437775 MT482122
 2020-04-13 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C15324T A21137G A23403G C23635T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_437801 MT482148
 2020-04-13 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T G8876A C10029T C14408T G20991T A23403G G25563T C25585T

EPI_ISL_437802 MT482149
 2020-04-13 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0169/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T TTA20423- G20991T A23403G G25563T C25585T G26062T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_438149
 2020-04-13 2020-05-12
 United States hCoV-19/USA/WA-S596/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_438150
 2020-04-13 2020-05-12
 United States hCoV-19/USA/WA-S597/2020
 C241T C1059T C3037T C14408T C22450T A23403G G25563T

EPI_ISL_438151
 2020-04-13 2020-05-12
 United States hCoV-19/USA/WA-S598/2020
 G3231T C8782T C17747T A17858G C18060T A20097G T28144C

EPI_ISL_438891
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11020T C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438895
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2378/2020
 C241T C3037T C14408T T17126C A20268G A23403G G24197A C25521T

EPI_ISL_438900
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2403/2020
 C241T C1427T C3037T C14408T C16289T A23403G T25222C G25429T C26060T

EPI_ISL_438901
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T5551C C7423T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439268
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3495/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_439269
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3496/2020
 C241T C3037T C10798A C13862T C14408T A23403G G24821T C28836T

EPI_ISL_439271
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3498/2020
 G219T C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_439273
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3500/2020
 G219T C241T C3037T C10798A C13862T C14408T A23403G C24174T C28836T

EPI_ISL_439274
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3501/2020
 A187G C241T T2290C C3037T C14408T A23403G A26009G C28603T

EPI_ISL_439275
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3502/2020
 C241T C3037T C10798A C13862T C14408T A23403G G24821T C28836T

EPI_ISL_439276
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3503/2020
 C241T C3037T C10798A C13862T C14408T A23403G G24821T C28836T

EPI_ISL_439277
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3518/2020
 C241T C3037T C14408T A23403G

EPI_ISL_439278
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3520/2020
 C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T G29179T

EPI_ISL_439279
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3530/2020
 C241T C784T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_439280
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3531/2020
 C241T C3037T C3543T C14408T C16289T A23403G G25429T C27800T

EPI_ISL_439281
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3532/2020
 C241T C3037T A5136G C14408T A20268G A23403G C28854T

EPI_ISL_439791
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/England/LIVE-99A77/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_439810
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/England/LIVE-99C44/2020
 G1148T A1515G G5036A T7106C C8836T C9223T G11083T A11782G C14805T T17247C T22726C G26144T

EPI_ISL_439817
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/England/LIVE-99D7E/2020
 C241T C3037T C14408T A23403G G25617T GGG28881AAC

EPI_ISL_443305
 2020-04-13 2020-05-12
 France hCoV-19/France/IDF5986/2020
 A26- C28T C241T C3037T T10561C C14408T C15324T C16887T A23403G C27350T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_443562
 2020-04-13 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2775G C3037T G4255T C13568T C14408T A20355G A23403G A26530G G26951C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_444155
 2020-04-13 2020-05-13
 United Kingdom hCoV-19/England/LOND-D47D3/2020
 C241T C3037T C14408T A23403G

EPI_ISL_444156
 2020-04-13 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4867/2020
 C241T C3037T C14408T C18568T A23403G G25429T C27807T

EPI_ISL_444197
 2020-04-13 2020-05-13
 United Kingdom hCoV-19/England/LOND-D505F/2020
 C241T C3037T A11537G C14408T G17964A A23403G

EPI_ISL_444292
 2020-04-13 2020-05-13
 United Kingdom hCoV-19/England/BIRM-5E3A0/2020
 C241T C3037T C14408T C22570T A23403G GGG28881AAC

EPI_ISL_444293
 2020-04-13 2020-05-13
 United Kingdom hCoV-19/England/BIRM-5E3BF/2020
 C241T C3037T G8834A G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_445086 MT450872
 2020-04-13 2020-05-09
 Serbia SARS-CoV-2/human/SRB/KV26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A15972G C19718T A23403G T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_445231
 2020-04-13 2020-05-15
 Sweden hCoV-19/Sweden/20-07237/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_445734
 2020-04-13 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B5F1/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_445735
 2020-04-13 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B60D/2020
 C241T C3037T A3260G C14408T C15324T C18904T G21867T A23403G G25266T G25606T A26513G G29462C

EPI_ISL_445743
 2020-04-13 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B685/2020
 AT1- A2480G C2558T G11083T A12529G C14805T G26144T ACTCGCTACTTGTGAGCT27426- G28883A G29414A

EPI_ISL_445755
 2020-04-13 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2B746/2020
 AT1- C241T C3037T A3911G C14408T A23403G T25272C C26028T

EPI_ISL_446441
 2020-04-13 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-313EF/2020
 A1- G1440A G2891A C12741A C21575T C25669Y T27502A C28786T G28851T

EPI_ISL_446601
 2020-04-13 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-32050/2020
 ATTA1- C241T C3037T T4186C G11801A G12191T C14408T T19839C G22468T A23403G G25552T GGG28881AAC

EPI_ISL_447580
 2020-04-13 2020-05-17
 India hCoV-19/India/CCMB_K496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A C7401T C7704T G11083T C13077T C13730T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_447621
 2020-04-13 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU27/2020
 C13432T G29254A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_448175
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2284/2020
 C241T C3037T C14408T C22879A A23403G

EPI_ISL_448178
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_448182
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2345/2020
 C1457T A2480G C2558T C2723T C2881A G11083T C14805T A20742G G26144T

EPI_ISL_448230
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8772/2020
 ATTA1- C241T C3037T G8602K G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_448269
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8A6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8367T C14408T C19524T A23403G GGG28881AAC

EPI_ISL_448274
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8AB5/2020
 ATTAAAG1- C241T C3037T C5628Y C8367T C11758Y C14408T C19524T A23403G GGG28881AAC C29870A

EPI_ISL_448276
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8AD3/2020
 ATTAAAG1- C241T C3037T A3108W C8367T C14408T C19524T A23403G GGG28881AAC

EPI_ISL_448278
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8AF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A C4668T A20598G C28708T

EPI_ISL_448279
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8B0D/2020
 A1- C241T C3037T C14408T A23403G G28077T GGG28881AAC

EPI_ISL_448280
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8B1C/2020
 C241T C3037T C14408T C20148T A23403G CC25162AA G25471T GGG28881AAC C29119Y

EPI_ISL_448282
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8B58/2020
 A1- C241T C3037T C8367T C14408T C19524T T21632C A23403G GGG28881AAC

EPI_ISL_448283
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8B85/2020
 C241T C3037T C14408T C20148T A23403G CC25162AA G25471T GGG28881AAC

EPI_ISL_448286
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8BB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T T549Y C3037T C14408T C20148Y A23403G C25728T GGG28881AAC

EPI_ISL_448287
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8BC1/2020
 ATTAA1- C241T C3037T C8367T C14408T C19524T A23403G GGG28881AAC

EPI_ISL_448292
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8C37/2020
 ATTAAAGGTTTA1- C241T C3037T C3602T C11460T C14408T A23403G A24232G G25429T C29253Y

EPI_ISL_448293
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8C64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C12915T C14408T A20268G C21575T A23403G C28776T

EPI_ISL_448296
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8C91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8367T C14408T C19524T A23403G GGG28881AAC C29870B

EPI_ISL_448298
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8CBF/2020
 ATTAAAGGT1- AT1605- C8917T C16349T C17898T C27128T

EPI_ISL_448300
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8CDD/2020
 AT1- C865T T6644C G11083T C14805T C23707T G26144T G27390T

EPI_ISL_448305
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8D34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_448827
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/SHEF-C0CBD/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_448896
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/SHEF-CF86F/2020
 C241T C3037T A9737G C14408T A23403G G26754T A27545G GGG28881AAC

EPI_ISL_448909
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/SHEF-D1660/2020
 C241T C1419T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_449103
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E80A4/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C678Y A2480G C2558Y A23403G G26144T GGG28881RRS C29870H

EPI_ISL_449135
 2020-04-13 2020-05-19
 United Kingdom hCoV-19/England/NORW-E82BD/2020
 ATTAAAGG1- C241T C2940T C3037T C5170T C14408T C17766T C22945T A23403G

EPI_ISL_449902 MT641544
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S732/2020
 C8782T G15406A C17010T G17523T C17747T A17858G C18060T T28144C

EPI_ISL_449903 MT641518
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S733/2020
 C8247T C8782T C12616T C17010T C17747T A17858G C17934T C18060T T28144C

EPI_ISL_449904 MT641583
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S734/2020
 C8782T G15406A C17010T C17747T A17858G C18060T T28144C

EPI_ISL_449905 MT641566
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S735/2020
 C8782T G15406A C17010T C17747T A17858G C18060T T28144C

EPI_ISL_449906 MT641533
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S736/2020
 C8782T C11460A G15406A C17010T C17747T A17858G C18060T T28144C

EPI_ISL_449907 MT641500
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S737/2020
 C241T C1059T C3037T C14408T A15426G C17690T C18029T C19029T A23403G G25563T T29410C G29553A

EPI_ISL_449908 MT641643
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S738/2020
 C241T C1059T G2246T C3037T C14408T A23403G G25563T C28603T

EPI_ISL_449909 MT641534
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S739/2020
 C241T G2626A C3037T C14408T T14784C A23403G C25521T GGG28881AAC

EPI_ISL_449910 MT641527
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S740/2020
 C241T C3037T A5538T C14408T G16813A A23403G T25783C GGG28881AAC

EPI_ISL_449911 MT641515
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S741/2020
 C241T G2626A C3037T C14408T T14784C A23403G C25521T GGG28881AAC

EPI_ISL_449912 MT641496
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S742/2020
 C241T G621A C1059T C3037T C7000T G7756T C14408T C20178T A23403G C25096T G25563T

EPI_ISL_449913 MT641574
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S743/2020
 C8782T C17010T C17747T A17858G C17934T C18060T T28144C

EPI_ISL_449915 MT641565
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S745/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27804T G29553A

EPI_ISL_449917 MT641488
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S747/2020
 C241T C1059T C3037T C4965T C14408T C17004T A23403G G25563T C27804T C27879T G29553A

EPI_ISL_449918 MT641525
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S748/2020
 C241T C1059T C3037T C14408T C17004T A23403G G25563T C27804T G29553A

EPI_ISL_449922 MT641499
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S752/2020
 C241T T833C C1059T C3037T C14408T C17163T C23248T A23403G G25563T C27964T

EPI_ISL_449923 MT641516
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S753/2020
 C241T T833C C1059T C3037T C14408T A15861G C17163T A23403G G25563T C27964T

EPI_ISL_449927 MT641579
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S757/2020
 C8782T G15406A C17010T C17747T A17858G C18060T T28144C

EPI_ISL_449928 MT641545
 2020-04-13 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S758/2020
 G354A C2070T C8782T C17747T A17858G C18060T A26566G T28144C

EPI_ISL_449941
 2020-04-13 2020-05-19
 United States hCoV-19/USA/WA-S771/2020
 C884T G1397A G8653T G11083T A19073G G27915T T28688C C28868T C29077T G29742T

EPI_ISL_452211
 2020-04-13 2020-05-27
 India hCoV-19/India/NIV-9157/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C3874T C5700A C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_453044
 2020-04-13 2020-05-27
 United Kingdom hCoV-19/Scotland/CVR2304/2020
 C241T C3037T C14408T C22879A A23403G

EPI_ISL_453103
 2020-04-13 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB3992/2020
 C241T C920T C3037T C7420T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_453772
 2020-04-13 2020-05-27
 United Kingdom hCoV-19/England/SHEF-D2A36/2020
 C241T C3037T C5585A G10097A C11750T C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_454557
 2020-04-13 2020-05-28
 India hCoV-19/India/NIV-9154/2020
 C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC A29827T G29830T

EPI_ISL_454709 MT536956
 2020-04-13 2020-05-28
 United States SARS-CoV-2/Human/USA/UT-01683/2020
 AT1- C241T G370T C3037T A3841T A6512C C14408T C18877T A19338R A23403G G25563T

EPI_ISL_454717 MT536964
 2020-04-13 2020-05-28
 United States SARS-CoV-2/Human/USA/UT-01892/2020
 A1- C241T C3037T A3841T A6512C C14408T C18877T A23403G G25563T A28692C

EPI_ISL_455269
 2020-04-13 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_456094
 2020-04-13 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T C3037T C14408T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456095
 2020-04-13 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456096
 2020-04-13 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27299C A28750G GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456097
 2020-04-13 2020-06-01
 Brazil hCoV-19/Brazil/RJ-1966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19709T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456098
 2020-04-13 2020-06-01
 Brazil hCoV-19/Brazil/RJ-2000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C643T C3037T C14408T G19684T A22720G A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456099
 2020-04-13 2020-06-01
 Brazil hCoV-19/Brazil/RJ-2007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C643T C3037T C14408T G19684T A22720G A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_457055
 2020-04-13 2020-06-02
 United Kingdom hCoV-19/England/EXET-1353EA/2020
 G11083T G13998T C14805T T17247C G26144T G28975T

EPI_ISL_457073
 2020-04-13 2020-06-02
 United Kingdom hCoV-19/England/EXET-1355B7/2020
 C241T C3037T T5422C C14408T A23403G T24976C GGG28881AAC

EPI_ISL_457075
 2020-04-13 2020-06-02
 United Kingdom hCoV-19/England/EXET-1355D5/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457102
 2020-04-13 2020-06-02
 United Kingdom hCoV-19/England/EXET-1357FD/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457116
 2020-04-13 2020-06-02
 United Kingdom hCoV-19/England/EXET-135915/2020
 C241T C3037T C14408T A20092G A23403G G24077T T28630G A28874G

EPI_ISL_457211
 2020-04-13 2020-06-02
 United Kingdom hCoV-19/England/EXET-136219/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC C29555T

EPI_ISL_457212
 2020-04-13 2020-06-02
 United Kingdom hCoV-19/England/EXET-136246/2020
 C241T C3037T C8344T A13456G C14408T A23403G G25855C GGG28881AAC

EPI_ISL_457214
 2020-04-13 2020-06-02
 United Kingdom hCoV-19/England/EXET-136273/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_457218
 2020-04-13 2020-06-02
 United Kingdom hCoV-19/England/EXET-136307/2020
 C241T C3037T C5005T C10156T C14408T G20464A A23403G C27297T GGG28881AAC

EPI_ISL_457219
 2020-04-13 2020-06-02
 United Kingdom hCoV-19/England/EXET-136316/2020
 C241T ACGGCGCCGATC672- C3037T G3047T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457915
 2020-04-13 2020-06-02
 Kenya hCoV-19/Kenya/P572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T C14408T A23403G G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458066
 2020-04-13 2020-06-03
 India hCoV-19/India/CCMB_O1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C6312A G11083T C13730T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458120
 2020-04-13 2020-06-03
 Oman hCoV-19/Oman/205028997/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C4246T G10265A C14408T C16293T G18985T A23403G CT23481TC GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_458258
 2020-04-13 2020-06-04
 United States hCoV-19/USA/CA-SR0376/2020
 C241T C1059T C3037T C14408T C16762T A23403G G25563T G25660T

EPI_ISL_458773
 2020-04-13 2020-06-04
 United Kingdom hCoV-19/England/BRIS-128933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C753T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458777
 2020-04-13 2020-06-04
 United Kingdom hCoV-19/England/BRIS-128D64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C5907T T21633C G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460735
 2020-04-13 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460736
 2020-04-13 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G GG24815TT GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460756
 2020-04-13 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T C14408T A16179G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460803
 2020-04-13 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T G19162T T23344C A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460804
 2020-04-13 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T T23344C A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460805
 2020-04-13 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1957T C3037T T9418C C14408T C17745T A23403G C27942T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460806
 2020-04-13 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T C20404T A23403G C25482T G25563T G26101T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460807
 2020-04-13 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G C25482T G25563T G26101T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460809
 2020-04-13 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T T22917G A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460852
 2020-04-13 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T14148C C17410T A26591G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461314
 2020-04-13 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16726T A23403G G24077T TTT29726- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_463914
 2020-04-13 2020-06-11
 Canada hCoV-19/Canada/QC_AH2/2020
 C241T C3037T C14408T C15324T C18828T A23403G C25433T C27654T

EPI_ISL_463953
 2020-04-13 2020-06-11
 Canada hCoV-19/Canada/QC_AX6/2020
 C241T C3037T C14408T C15324T C18086T A23403G C25433T

EPI_ISL_463963
 2020-04-13 2020-06-11
 Canada hCoV-19/Canada/QC_BA6/2020
 C241T C3037T A8962G C14408T C15324T A22053G A23403G C25433T

EPI_ISL_463965
 2020-04-13 2020-06-11
 Canada hCoV-19/Canada/QC_BB7/2020
 C241T C3037T C14408T C15324T A23403G C25433T

EPI_ISL_464019
 2020-04-13 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0076/2020
 C241T C3037T G4201T C14408T A20411G A23403G C26527T G29734A

EPI_ISL_465274
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/20170030904/2020
 G105T C241T T2300Y C3037T C14408T A23403G C25324M AG25336MS GGG28881AAC

EPI_ISL_465343
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/20172042904/2020
 C241T C3037T G10097A C14408T A23403G C23731T C25324M G25337S C25517Y G28580T GGG28881AAC

EPI_ISL_465353
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/20172048304/2020
 C241T C3037T G10097A C14408T G20263K A23403G C23731T C25517Y G28580T GGG28881AAC

EPI_ISL_465397
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/20174037704/2020
 C241T C900T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_466385
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/201620024/2020
 A2480G C2558T C8078T A9749G G11083T T14133C C14805T G26144T

EPI_ISL_466389
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/20162003404/2020
 A2480G C2558T C8078T A9749G G11083T T14133C C14805T G26144T

EPI_ISL_466391
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/201620041/2020
 C241T C3037T C6525T C14408T T15555C A23403G GGG28881AAC

EPI_ISL_466392
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/201620042/2020
 C241T C3037T C6525T C14408T T15555C A23403G GGG28881AAC AA29883CC

EPI_ISL_466395
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/201620049/2020
 A187R C241Y C583Y C3037T A5650R C7279Y C14408T C14741T A23403G C25350T G26144K

EPI_ISL_466398
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/201620053/2020
 C241T C3037T G7042T C11003Y C11594Y C13176Y C14408T G17331T A21137G A23403G C26882T GCCACGCGGAGTAC29737-

EPI_ISL_466399
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/20162005404/2020
 C241T C3037T G7042T A11474W C14408T G17331T A21137G C21614Y A23403G C26645Y C26882T

EPI_ISL_466445
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/20164013504/2020
 C241T C3037T C11518T C14408T C16289T C19273T A23403G G25429T

EPI_ISL_466465
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/20164067404/2020
 C241T C2306T C3037T C11193Y C14408T A23403G GGG28881AAC GGCCACGCGGAGTACGATCGAGTG29736-

EPI_ISL_466616
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/20168038004/2020
 C241T C2462A C3037T C14408T C18877T A23403G GGG28881AAC C29144T T29760C A29871G

EPI_ISL_466617
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/20168038104/2020
 C241T C2462A C3037T C14408T C18877T A23403G GGG28881AAC C29144T T29760C

EPI_ISL_466619
 2020-04-13 2020-06-11
 United Kingdom hCoV-19/England/20168038304/2020
 C241Y G247K C2062T A2480G C2558T C3511Y T9676Y G11083T C14407Y C14805T T16389W C16466Y G17102K C18117T A21137G C23099Y C25521T G26144T

EPI_ISL_467289
 2020-04-13 2020-06-12
 Spain hCoV-19/Spain/COV002733/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_468320
 2020-04-13 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-508/2020
 T25A C241T C3037T C12412T C14408T A23403G GGG28881AAC AG29863TA AAAAAAAAAAAAA29891-

EPI_ISL_468374 MT628110
 2020-04-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1369/2020
 AT1- C241T C1059T C3037T G11401T G13822A C14408T A23403G G25563T T27495G

EPI_ISL_469017
 2020-04-13 2020-06-17
 Morocco hCoV-19/Morocco/Mor-CoV-1/2020
 C241T C1059T T1666C C3037T C14408T A23403G G25563T

EPI_ISL_469117
 2020-04-13 2020-06-17
 Singapore hCoV-19/Singapore/362/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_470659
 2020-04-13 2020-06-18
 United States hCoV-19/USA/UT-01854/2020
 A1- C241T C888T C3037T C10448T C14408T A23403G G25217T GGG28881AAC

EPI_ISL_470699
 2020-04-13 2020-06-18
 United States hCoV-19/USA/UT-01875/2020
 C241T C3037T G3518T C13536T C14408T T21042C A23403G T29672C

EPI_ISL_471247
 2020-04-13 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471457
 2020-04-13 2020-06-22
 Morocco hCoV-19/Morocco/HMIMV-Rabat1025-04/2020
 ATTAAAGGTTTATACCTTCC1- G23T C241T C3037T C5884T C14408T C17104T A20268G G21578T A23403G G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_471549
 2020-04-13 2020-06-22
 Brazil hCoV-19/Brazil/SP-607/2020
 C241T C3037T C9474T C12053T C14408T C14599T C20132T A23403G G25088T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_473789
 2020-04-13 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB3506/2020
 C241T C3037T G8144A C10798A C13862T C14408T A23403G G24095T C28836T

EPI_ISL_473824
 2020-04-13 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5444/2020
 C241T C2841T C3037T G7016A C10798A C13862T C14408T A23403G C28836T

EPI_ISL_474998
 2020-04-13 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7905/2020
 G210T C241T C1059T T1877C C3037T C14408T A20755C A23403G G24095T G25563T

EPI_ISL_475006
 2020-04-13 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7909/2020
 C241T C2416T C3037T C11289T T13102G C14408T A23403G G25563T

EPI_ISL_475007
 2020-04-13 2020-06-23
 Israel hCoV-19/Israel/CVL-n-7920/2020
 C66A C241T C1059T C3037T C4058T C11916T C14408T C16017T C17304T C18998T A23403G G25563T G26263A T29010C G29540A

EPI_ISL_475125
 2020-04-13 2020-06-23
 Sweden hCoV-19/Sweden/20-08841/2020
 C241T C1059T C3037T C5184T C14408T A23403G G24368T G25563T

EPI_ISL_475625
 2020-04-13 2020-06-23
 United States hCoV-19/USA/CA-CSMC16/2020
 C241T C1059T T2330A A2679T C3037T T13112A C14408T T15071A C18176T T18402A A23403G G25563T C25721A

EPI_ISL_475643
 2020-04-13 2020-06-23
 United States hCoV-19/USA/CA-CSMC32/2020
 C241T C1059T C3037T A4308G T7527C C14408T C16969T A23403G A24966T G25563T

EPI_ISL_475662
 2020-04-13 2020-06-23
 United States hCoV-19/USA/CA-CSMC5/2020
 C241T C379A C1059T C3037T C14408T G21800T A23403G G25563T C29837T

EPI_ISL_475672
 2020-04-13 2020-06-23
 United States hCoV-19/USA/CA-CSMC59/2020
 G185C C241T C1059T C1698T C3037T G3155C C6242T G12164T A12615C T13575C C14408T C16265A A16722T A23403G C25466T G25563T A25800G

EPI_ISL_477160 MT670008
 2020-04-13 2020-06-25
 United States SARS-CoV-2/Environment/USA/UF-20/2020
 A1- C241T C1059T C3037T C5183T C14408T A23403G G25563T AAAAAAAA29896-

EPI_ISL_477163 EPI_ISL_480349 MT668716
 2020-04-13 2020-06-25
 United States SARS-CoV-2/human/USA/UF-19/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C5183T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_477182
 2020-04-13 2020-06-29
 Singapore hCoV-19/Singapore/488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477184
 2020-04-13 2020-06-29
 Singapore hCoV-19/Singapore/489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477897
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C843T C3037T C14408T C16289T A23403G C23595T T25222C G25429T T27264C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477898
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23638T G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477899
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T T25123C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477901
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10073A C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477902
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9808T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477903
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477904
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477905
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477906
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3431T C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477909
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13169T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477910
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13169T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477914
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477916
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T G28845A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477920
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2399T C3037T C10335T A11430G C14408T G19117T A23403G A27232G GGG28881AAC C28940T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477925
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C745T C1625T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477926
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4151G G11083T C14408T C21054T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477928
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C7926T G11083T C14805T C16887T G26144T C27600T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477930
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C27923T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478405
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/LOND-D47C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_478406
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/LOND-D4E83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C14408T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_478734
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF3FB/2020
 C241T C3037T T4667K C14408T T16773K T16789K T18398C A23403G G24781T G28580A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_478736
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF416/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC G29706T A29903-

EPI_ISL_478740
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF452/2020
 C241T C3037T C14408T G22592T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_478747
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF513/2020
 C241T TCATGG505- C3037T C14408T C14531T A23403G C29578T

EPI_ISL_478757
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF610/2020
 C241T C3037T C14408T T18398C A23403G G24781T T28031C G28580A GGG28881AAC

EPI_ISL_478759
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF65C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- A1515G C9223T C10277T G11083T C14805T C17074T T17247C G26144T G27281T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_478989
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-B103B/2020
 C241T C3037T C5817T C14408T A21244T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_479086
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1CDD/2020
 C241T C3037T G12550A C14408T C16362T A23403G GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_479090
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1D9E/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C3464T C6723T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_479119
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2137/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_479121
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2155/2020
 C241T G1820A C3037T C14408T A16881G A23403G C26942T GGG28881AAC

EPI_ISL_479123
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2173/2020
 C241T C1912T C3037T C14408T G14580T A16305G G18674A T22648A A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_479157
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-B25B3/2020
 C241T C3037T A10948G C14408T A19098G A23403G C27542T GGG28881AAC AAAAAAA29897-

EPI_ISL_479165
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2692/2020
 ATTAAAG1- C241T C3037T G10097A C13860T C14408T A23403G C23731T GTGCCA27626- G28580T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_479172
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2735/2020
 AT1- T10K C241T C3037T T3982C C7164T C14408T C20389T T22220A A23403G C25587T C27046T C28344A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_479174
 2020-04-13 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2753/2020
 C241T C1594T C3037T C6723T C14408T A23403G GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_479790
 2020-04-13 2020-07-01
 Italy hCoV-19/Italy/FVG-ICGEB_atr21/2020
 C241T C3037T T9593C C14408T G20398A A23403G A26530G C27393T C29743T

EPI_ISL_480228
 2020-04-13 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV003/2020
 C241T C2644T C3037T C7765T C14408T G16912T C17690T C18877T A23403G G25563T

EPI_ISL_480229
 2020-04-13 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV004/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC C29421T

EPI_ISL_480230
 2020-04-13 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV006/2020
 C241T C3037T G11083T C12809T C14408T C20629T A23403G GGG28881AAC

EPI_ISL_480231
 2020-04-13 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV007/2020
 C241T C3037T T10794C C14408T C15810T C18877T A23403G G25563T GGCCACGCGGAGTACGATCGAGTG29736-

EPI_ISL_480399 MT772566
 2020-04-13 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5482T C14408T T15354C C17550T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480400 MT772567
 2020-04-13 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481758
 2020-04-13 2020-07-03
 Canada hCoV-19/Canada/NB_277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C753T G1957T C3037T G10265A C10576T C14408T A23403G T27336C G28089T GGG28881AAC ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_482009
 2020-04-13 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12E250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C14408T A23403G G25563T G29705T C29738T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482339
 2020-04-13 2020-07-03
 United States hCoV-19/USA/OR-PROV-059/2020
 G208T C241T C1059T C3037T T3312C A10323G C14408T C22949T A23403G G25563T

EPI_ISL_482340
 2020-04-13 2020-07-03
 United States hCoV-19/USA/OR-PROV-060/2020
 G208T C241T C1059T C3037T T3312C A10323G C14408T C22949T A23403G G25563T

EPI_ISL_482341
 2020-04-13 2020-07-03
 United States hCoV-19/USA/OR-PROV-061/2020
 C241T C3037T C11563T C14408T C18877T A23403G G25563T

EPI_ISL_482342
 2020-04-13 2020-07-03
 United States hCoV-19/USA/OR-PROV-062/2020
 C241T C3037T A9683C C11563T A11983G C14408T C18877T A23403G G25563T C27431T

EPI_ISL_483182
 2020-04-13 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0497-IPL/2020
 ATTAAAGGT1- C241T C1911T C3037T C14408T C15810T A20268G A23403G T24076C C28854T

EPI_ISL_483243
 2020-04-13 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0587-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T C16762T A23403G G25563T T27504A

EPI_ISL_483338
 2020-04-13 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0759-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1911T C3037T C14408T C15810T A20268G A23403G T24076C C28854T

EPI_ISL_483724
 2020-04-13 2020-07-08
 Israel hCoV-19/Israel/n14294/2020
 C241T C1059T C3037T T6988A C11916T G13025T G13570- C14408T C18998T AAG20576- A22390G A23403G G25563T G29540A

EPI_ISL_484406
 2020-04-13 2020-07-08
 United Kingdom hCoV-19/England/NOTT-112644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2574T C4540T C8782T T9477A C12049T C14805T C25714T G25979T C26029A C28000T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484423
 2020-04-13 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D183B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484576
 2020-04-13 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C15017T A23403G C28411T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484578
 2020-04-13 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22992A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484579
 2020-04-13 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- T5551C C7423T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486109
 2020-04-13 2020-07-10
 United States hCoV-19/USA/WA-UW-7178/2020
 A1G A4T AAC34TTT C241T C1059T C3037T A12148T C14408T A23403G G25563T G29553A TG29867AA C29870A

EPI_ISL_487462
 2020-04-13 2020-07-14
 Mali hCoV-19/Mali/M002758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G10974A G12292T C14408T A23403G G25563T C26198T G29745A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487656
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T G6563K C14408T C16289T C22388T A23403G G23426T G25429T C25511T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487660
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3911G C14408T A23403G C26028T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487675
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C25624T C27294Y C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487679
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9223T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487681
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G24821T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487687
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9223T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487692
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9223T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487704
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T A11252G C14805T A23403R G26144T G28960T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487715
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487747
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C27679T G27987T G28631A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487750
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G188A C241T C3037T G10097A C12854T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487753
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487765
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487769
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T T12388C C14408T C16289T A23403G G23426T G25429T G26152T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487784
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3911G C14408T A23403G C26028T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487792
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3598C C8917T C14408T C21575T A23403G C24919T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487803
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T T9703C C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487814
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C19029T C21622T A23403G C28637T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487842
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T7912C -11075TTT G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487853
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28567T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487863
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4956G C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487870
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5136G C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487880
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T T12388C C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487887
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487929
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3215G A12472G C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487937
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4886Y C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487942
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487943
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8581T C10798A C13862T C14408T A23403G A24461G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487950
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487961
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487972
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487980
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T A29125G G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487998
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G C28836T C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488194
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F51A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1755G C3037T C14408T G18315A G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488200
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F3E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488218
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488226
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F1DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29420T TAGTA29823- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488230
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13617T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488237
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F2B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13862T C14408T C17004Y A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488239
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488265
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F4D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T G25681A G26365T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488266
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F35C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488269
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C92T C241T C3037T C7765T G10097A C14408T C16658G A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488291
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F3A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A21137G A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488300
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C11962T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488309
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F4E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T G25681A G26365T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488326
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F36B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2197T C3037T C7945T C14408T A18085G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488345
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F43B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488359
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2731A C3037T C10116T C14408T C17550T A23403G C23520T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488365
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F3C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A12424G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488372
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F26E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T G25681A G26365T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488373
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F25F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10540T G11221T C14408T C19170T G19509A A23403G C24099T G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488374
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F1CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5619C C7086T C14408T A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488385
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488400
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F32F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C8655T C14408T A23403G C25521A C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488416
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F42C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17249T G17722T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488422
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F44A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488445
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7081T C14408T G18636A C19836T A23403G C26058T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488446
 2020-04-13 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F3B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489753 MT757013
 2020-04-13 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0344/2020
 ATT1- C241T C1059T C1917T C3037T C14408T G22932A A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_490686
 2020-04-13 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR2362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T T9304C A9656G T18736C G19684T C24034T T26729C C26781T C27635T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491123
 2020-04-13 2020-07-16
 Oman hCoV-19/Oman/17309/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A5872C G10265A C14408T C16293T G17064T C18109T C18395T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_491144
 2020-04-13 2020-07-16
 Oman hCoV-19/Oman/20762/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T G10265A C14408T C16293T G17302T C17740T A23403G GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_491148
 2020-04-13 2020-07-16
 Oman hCoV-19/Oman/20751/2020
 ATTAAAGGTTTATACCTTCCCAG1- T25A C241T C3037T G10265A C14408T C16293T G17302T G21600T A23403G GGG28881AAC T29848A A29850T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_491458
 2020-04-13 2020-07-17
 Peru hCoV-19/Peru/INS-033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C13536T C14408T C21575T A23403G C23731T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491551
 2020-04-13 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5305R A10874G C14408T A23403G G25429T G25440A C25916T T26677C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491555
 2020-04-13 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10874G C14408T G21451K A23403G G25429T C25916T T26677C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491557
 2020-04-13 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4551T T5161A C14408T T17126C A20268G A23403G G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491560
 2020-04-13 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A687R C3037T C14408T T20196A A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491563
 2020-04-13 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491587
 2020-04-13 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10874G C14408T A23403G G25429T G25440A C25916T T26677C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491618
 2020-04-13 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T C16289T G19069R A23403G T25159Y G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491630
 2020-04-13 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T14079C C14408T T15114C TTTTGGGTG21981- A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491638
 2020-04-13 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10874G C14408T C18348T A23403G G25429T G25440A C25916T T26677C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491639
 2020-04-13 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T14079C C14408T A23403G G25690T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491649
 2020-04-13 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491696
 2020-04-13 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12784T C14408T T14467A A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491935
 2020-04-13 2020-07-17
 Ecuador hCoV-19/Ecuador/USFQ-131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29750-

EPI_ISL_492070 MT775830
 2020-04-13 2020-07-19
 Poland SARS-CoV-2/human/POL/PL_P45/2020
 C241T C3037T C3587T G7214K G7936A C11572T C14408T A23403G GGG28881AAC C29870M

EPI_ISL_492337
 2020-04-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-185380B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T A23403G C25528T C25585T G25970T G26918T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492539
 2020-04-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13090B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492561
 2020-04-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1308C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492567
 2020-04-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A7479G C10741T G11083T C14805T T17247C C25572T G26144T C27498T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492577
 2020-04-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1308FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3675C A13303R C14408T C17977T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492623
 2020-04-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130A08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15857T A23403G C25509T G27882A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492629
 2020-04-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-13091A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492655
 2020-04-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1308E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T G10073A C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492662
 2020-04-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A7479G C10741T G11083T C14805T T17247C C25572T G26144T C27498T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492736
 2020-04-13 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C173T C241T C3037T C14408T A23403G G23873T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493549
 2020-04-13 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G347A C3037T C14408T A23403G GGG28881AAC G29422A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494446
 2020-04-13 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_495563
 2020-04-13 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S000956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A5011C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_496530
 2020-04-13 2020-07-24
 India hCoV-19/India/BJMC_1089/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC G29711- T29753-

EPI_ISL_507934
 2020-04-13 2020-08-03
 United States hCoV-19/USA/MN-MDH-1345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G5017T C8782T G14350T C17747T A17858G C18060T A24694T T28144C C28310A G28812T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_507935
 2020-04-13 2020-08-03
 United States hCoV-19/USA/MN-MDH-1346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G5017T C8782T G14350T A17858G C18060T A24694T T28144C G28812T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_508407
 2020-04-13 2020-08-04
 India hCoV-19/India/IK9/2020
 ATTA1- C241T C3037T C14408T A23403G G29868A

EPI_ISL_509085
 2020-04-13 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G T25729C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509426
 2020-04-13 2020-08-05
 United States hCoV-19/USA/AL-SV101V1/2020
 C241T C1059T C3037T C14408T C21575T A23403G G25563T C27128T C27964T

EPI_ISL_509498
 2020-04-13 2020-08-05
 Australia hCoV-19/Australia/NSW2120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C3037T G12565T C14408T A23403G G25049T T25473C T27233C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509689 MT844045
 2020-04-13 2020-08-05
 United States SARS-CoV-2/human/USA/UT-CDC-9758/2020
 C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_510548
 2020-04-13 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2209/2020
 ATTAA1- C241T C2416T C3037T C14408T G23222A A23403G G25563T C25889T AAAAAAAAAAAAA29891-

EPI_ISL_511501
 2020-04-13 2020-08-08
 Portugal hCoV-19/Portugal/PT0951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T505C C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511502
 2020-04-13 2020-08-08
 Portugal hCoV-19/Portugal/PT0952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G2144A C3037T C14408T C21846T A23403G C28849T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_514484
 2020-04-13 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D1A53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C3923A C10789T C11195T C14408T C18252T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515233
 2020-04-13 2020-08-18
 Canada hCoV-19/Canada/QC_AW7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515244
 2020-04-13 2020-08-18
 Canada hCoV-19/Canada/QC_BB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11138T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515355
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0078/2020
 ATTA1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515356
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0079/2020
 AT1- C241T C379A C1059T C3037T C12213T CC14407TT C17172T A23403G G25563T

EPI_ISL_515357
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0080/2020
 A1- C241T C379A C1059T C3037T C11102T CC14407TT G18984T A23403G G25563T C26509T

EPI_ISL_515359
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0082/2020
 C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515361
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0084/2020
 AT1- C241T C379A C1059T C3037T C4113T CC14407TT T19026C G21123T A23403G G24236T G25563T G28884T

EPI_ISL_515362
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0085/2020
 ATT1- C241T C379A C1059T C3037T C4113T CC14407TT A20036C A23403G G25563T

EPI_ISL_515363
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0086/2020
 ATT1- C241T C379A C1059T C3037T C4113T CC14407TT A20036C A23403G G25563T

EPI_ISL_515364
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0087/2020
 AT1- C241T C379A C1059T C3037T C11102T CC14407TT G18984T A23403G G25563T C26509T

EPI_ISL_515365
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0088/2020
 ATT1- C241T C379A C1059T C3037T C11102T CC14407TT G18984T A23403G G25563T C26509T

EPI_ISL_515366
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0089/2020
 C241T C379A C1059T C3037T C11102T CC14407TT G18984T A23403G G25563T C26509T

EPI_ISL_515367
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0090/2020
 ATTAAA1- C241T C379A C1059T C3037T C11102T CC14407TT G18984T A23403G G25563T C26509T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_515368
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0091/2020
 C241T C379A C1059T C3037T T4597C C14408T A23403G G25563T

EPI_ISL_515369
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0092/2020
 ATTA1- C241T C379A C1059T C3037T G11842T C14408T A23403G G25563T

EPI_ISL_515370
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0093/2020
 ATT1- C241T C379A C1059T C3037T C14408T C18377T C18647T A23403G G25563T T28187C

EPI_ISL_515371
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0094/2020
 ATTAAA1- C241T C1059T C1884T C3037T C6501T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_515372
 2020-04-13 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0095/2020
 ATTA1- C241T C1059T C1884T C3037T C6501T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_515562
 2020-04-13 2020-08-19
 Brazil hCoV-19/Brazil/SP-619/2020
 ATTAAAGGTTT1- T13C CCTTCCCAGGT15- C241T C3037T T5125C C6690T C14408T A23403G G25088T GGG28881AAC G29392T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_518821
 2020-04-13 2020-08-25
 Oman hCoV-19/Oman/RESP-20-16211/2020
 ATTAAAGGTTTATACCTTCCCAG1- T25C C241T C3037T G10265A C14408T C16293T T18792C C21859T A23403G A25747G C28854T GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_520668
 2020-04-13 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L2004034430/2020
 G1397A G11083T C27741T T28688C G29742T

EPI_ISL_522700 MT973337
 2020-04-13 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C829Y C4540T A4624G C8782T T9477A C14805T C22370M C22522M G25979T G26062T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_522701 MT973338
 2020-04-13 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3140T C4540T A4624G C8782T T9477A C14805T G22335K C22452M G22487R C22522M G25979T G26062T T28144C C28311T C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523479
 2020-04-13 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524877
 2020-04-13 2020-08-28
 United States hCoV-19/USA/MD-MDH-0149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2416T C2706T C3037T C14408T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_524878
 2020-04-13 2020-08-28
 United States hCoV-19/USA/MD-MDH-0150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C3267T C14408T A23403G G25563T C27644T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_525674
 2020-04-13 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-45936-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C346T C1059T C3037T A6616G C11653T C14408T A23403G G25563T C26801T CACCGAGGCCACGCG29730- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525675
 2020-04-13 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-46188-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T AAGTCATTT686- C1059T G2808A C3037T C14408T A23403G G25563T A26433G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_525676
 2020-04-13 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-46314-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525679
 2020-04-13 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-46319-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_527329
 2020-04-13 2020-09-03
 United Kingdom hCoV-19/England/20162000304/2020
 AT1- A2480G C2558T C8078T A9749G G11083T C12312Y T14133C C14805T G26144T AAAAAAAAAAAA29892-

EPI_ISL_527331
 2020-04-13 2020-09-03
 United Kingdom hCoV-19/England/20162002304/2020
 ATT1- A2480G C2558T T4786Y C8078T G11083T T14133C C14805T G26144T AA29902-

EPI_ISL_527332
 2020-04-13 2020-09-03
 United Kingdom hCoV-19/England/20162007704/2020
 ATTA1- A2480G C2558T C8078T C8950T A9749G G11083T T14133C C14805T GCTTTA22289- G26144T A28366W AAAAAAAAAA29894-

EPI_ISL_527333
 2020-04-13 2020-09-03
 United Kingdom hCoV-19/England/20162007804/2020
 ATTAAAGGTTTA1- A2480G C2558T C8078T A9749G G11083T T13171C T14133C C14805T G26144T AAAAAAAAAAAA29892-

EPI_ISL_527334
 2020-04-13 2020-09-03
 United Kingdom hCoV-19/England/20162008304/2020
 ATT1- A2480G C2558T C3045T C8078T A9749G G11083T T14133C C14805T G26144T AAAAAAAA29896-

EPI_ISL_527716
 2020-04-13 2020-09-04
 United States hCoV-19/USA/MN-CDC-6513/2020
 C241T C1059T C3037T C10507T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527718
 2020-04-13 2020-09-04
 United States hCoV-19/USA/MN-CDC-6517/2020
 A2480G C2558T C5850T C10908T G11083T C14805T G26144T C27998A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527789
 2020-04-13 2020-09-04
 Peru hCoV-19/Peru/ARE-INS-076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T G10265A C14408T A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_528388
 2020-04-13 2020-09-07
 United Kingdom hCoV-19/England/20168039704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T G1322A C3037T C9870T C14408T A23403G A29903-

EPI_ISL_528389
 2020-04-13 2020-09-07
 United Kingdom hCoV-19/England/20168039904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2462A C3037T C14408T C18877T A23403G GGG28881AAC C29144T T29760C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_530065
 2020-04-13 2020-09-10
 Spain hCoV-19/Spain/MD-LP62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5986T C14408T A20268G A23403G C24370T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534763
 2020-04-13 2020-09-14
 United Kingdom hCoV-19/England/OXON-AF382/2020
 ATTAAAGGTTTATAC1- C241T C1912T C3037T C14408T G14580T A16305G G18674A T22648A A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_534771
 2020-04-13 2020-09-14
 United Kingdom hCoV-19/England/OXON-B27CC/2020
 ATTAAAG1- C241T C313T T2463A C3037T C11379T C14408T A23403G G28086T GGG28881AAC T29726- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_534778
 2020-04-13 2020-09-14
 United Kingdom hCoV-19/England/OXON-B288D/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_534781
 2020-04-13 2020-09-14
 United Kingdom hCoV-19/England/OXON-B294E/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_534786
 2020-04-13 2020-09-14
 United Kingdom hCoV-19/England/OXON-B29E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- T60W C241T T523A C3037T C9246T C14408T A23403G A25986G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_534792
 2020-04-13 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2AC3/2020
 C241T C3037T C14408T T19839C A23403G C26681T GGG28881AAC

EPI_ISL_534793
 2020-04-13 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2AF0/2020
 C241T C3037T G10097A C13860T C14408T A23403G C23731T GTGCCA27626- G28580T GGG28881AAC AAAAA29899-

EPI_ISL_534806
 2020-04-13 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2CCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C6723T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_534895
 2020-04-13 2020-09-14
 United Kingdom hCoV-19/England/OXON-B393E/2020
 C241T A929G C2142T C3037T C14408T C19170T G19509A A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_535022
 2020-04-13 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4F4A/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_535023
 2020-04-13 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4FB3/2020
 C241T C3037T A10948G C14408T A19098G A23403G C27542T GGG28881AAC AAA29901-

EPI_ISL_535027
 2020-04-13 2020-09-14
 United Kingdom hCoV-19/England/PORT-2D3417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T T4579A C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535028
 2020-04-13 2020-09-14
 United Kingdom hCoV-19/England/PORT-2D3426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4276T A5269G C14408T A15486T A23403G C23758T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535029
 2020-04-13 2020-09-14
 United Kingdom hCoV-19/England/PORT-2D3444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G A3003T C3037T C5730T C7231T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537364
 2020-04-13 2020-09-16
 Spain hCoV-19/Spain/CL-CSIC-97006218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1547G C3037T T6294C C7528T G11083K C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_537374
 2020-04-13 2020-09-16
 Spain hCoV-19/Spain/CL-CSIC-97006228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1547G C3037T T6294C C14408T A20268G A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_537562
 2020-04-13 2020-09-16
 United States hCoV-19/USA/CA-UCLA-3/2020
 A1- C241T C379A A513T C1059T C3037T G11893T C14408T G16065T G16707T A23403G A24922G G25563T A28032G GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_537570
 2020-04-13 2020-09-16
 United States hCoV-19/USA/CA-UCLA-4/2020
 A1- C241T C379A C1059T A2166T C3037T G11893T C14408T G16707T A23403G A24922G G25563T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_537579
 2020-04-13 2020-09-16
 United States hCoV-19/USA/CA-UCLA-5/2020
 A1- C241T C379A C1059T C3037T A14041G C14408T C22323T A23403G G25563T C29769T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_538129
 2020-04-13 2020-09-16
 Spain hCoV-19/Spain/AN-CSIC-98001690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1015G C2710T C3037T C9169T C14408T G16603T A20268G T20497A A23403G G29734C

EPI_ISL_538751
 2020-04-13 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A973F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5144Y T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538812
 2020-04-13 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A93E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T C16092T A16339G T22819C G23948T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538848
 2020-04-13 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C364T C8782T G11230T C23536T T28144C G28167A G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538871
 2020-04-13 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A985A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C364T C8782T G11230T C23536T T28144C G28167A G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538930
 2020-04-13 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A94A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538936
 2020-04-13 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9C03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2054T C3037T C14408T C23127Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538946
 2020-04-13 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9C30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538953
 2020-04-13 2020-09-17
 United Kingdom hCoV-19/England/LEED-2AA6AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T3825C A10236R T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538960
 2020-04-13 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9BF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G377T C3037T T4735A T12045C C14408T C18657T A20268G A23403G C27442T C27879T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539795
 2020-04-13 2020-09-20
 United States hCoV-19/USA/WY-WYPHL-20008859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T T27117C

EPI_ISL_541241
 2020-04-13 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1231/2020
 ATTAAAGGT1- C241T C1059T C1387T C3037T C14408T A20755C A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_541352
 2020-04-13 2020-09-22
 Brazil hCoV-19/Brazil/RJ-1953/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858C

EPI_ISL_541355
 2020-04-13 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2192/2020
 A1- C241T C3037T C12053T C14408T C18171Y C19118T G23236K A23403G G25088T GGG28881AAC GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541754
 2020-04-13 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286E03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24933T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541757
 2020-04-13 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286E6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17944T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542493
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T G11083T C14408T C22477T A23403G G24368T G25563T C28093T C29253T G29315T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542496
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542516
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542624
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2018G C3037T T12779C C14408T T21995C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542626
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2331A C3037T C10319T C14408T C22716T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542634
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9438T G11083T C14408T A23403G G25429T G25563T C25919T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542644
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G C24642T T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542696
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T G15327T A23403G T24982C G25563T C27493T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542698
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15026T C18463T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542724
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C G28812T C28896G C29451T A29700G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_542727
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_542742
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T A11782G C11962T C14408T C21549T A23403G T24982C C25413T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542784
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1230G C3037T C9893T C10029T C11916T C14408T A23403G T25412C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542785
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542786
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A496G C1059T C3037T C14220T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542787
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C18788T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542788
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17808T A23403G G25563T T27384C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542904
 2020-04-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1230G C3037T C9893T C10029T C11916T C14408T A23403G T25412C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565837
 2020-04-13 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C6255T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565838
 2020-04-13 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G105T C241T C1059T C3037T T13633C C14262T C14408T A23403G C25487T G25563T C27847T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565970
 2020-04-13 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T A5011M C12153T C14408T A23403G G25563T C29614T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565977
 2020-04-13 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C1204Y C3037T A5011M C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568898
 2020-04-13 2020-10-02
 France hCoV-19/France/IHU-0627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C16289T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568899
 2020-04-13 2020-10-02
 France hCoV-19/France/IHU-0628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C9344T G11083T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568901
 2020-04-13 2020-10-02
 France hCoV-19/France/IHU-0630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568902
 2020-04-13 2020-10-02
 France hCoV-19/France/IHU-0631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T A681G C2416T A2745G C3037T G8371T A12334T C14408T C15810T A23403G G25563T C26333T C28292A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568903
 2020-04-13 2020-10-02
 France hCoV-19/France/IHU-0632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568904
 2020-04-13 2020-10-02
 France hCoV-19/France/IHU-0633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C5407T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568905
 2020-04-13 2020-10-02
 France hCoV-19/France/IHU-0634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C2910T C3037T G8371T C14408T A23403G C23709T G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568906
 2020-04-13 2020-10-02
 France hCoV-19/France/IHU-0635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C815T C1191T C3037T C14408T G15260T C15324T A23403G GTT26155- TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568907
 2020-04-13 2020-10-02
 France hCoV-19/France/IHU-0637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T C3037T C14408T G19518T C21846T A23403G G28845T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568908
 2020-04-13 2020-10-02
 France hCoV-19/France/IHU-0638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2189T C3037T G4105T C14408T C15324T C21646T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT627757
 2020-04-13 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S598/2020
 ATTAAAGGTTT1- G3231T C8782T C17747T A17858G C18060T A20097G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627926
 2020-04-13 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S596/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627928
 2020-04-13 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S597/2020
 ATTAAAG1- C241T C1059T C3037T C14408T C22450T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT706240
 2020-04-13 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G T27348C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706258
 2020-04-13 2020-07-03
 United States SARS-CoV-2/human/USA/IL-UW-130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706262
 2020-04-13 2020-07-03
 United States SARS-CoV-2/human/USA/WI-UW-134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT706271
 2020-04-13 2020-07-03
 United States SARS-CoV-2/human/USA/IL-UW-143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T A9685G G12478A T18736C A20645G C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT731285
 2020-04-13 2020-07-08
 Morocco SARS-CoV-2/human/MAR/RMPS01/2020
 C241T C1059T T1666C C3037T C14408T A23403G G25563T

MT731292
 2020-04-13 2020-07-08
 Morocco SARS-CoV-2/human/MAR/RMPS02/2020
 C241T C3037T C14408T C18877T A23403G G25563T G29315C

MT810673
 2020-04-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1222-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810995
 2020-04-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0376-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T G25660T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811200
 2020-04-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0497-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1911T C3037T C14408T C15810T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811258
 2020-04-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0587-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T T27504A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811351
 2020-04-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0759-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1911T C3037T C14408T C15810T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT820129
 2020-04-13 2020-07-30
 United States SARS-CoV-2/human/USA/SV101V1/2020
 C241T C1059T C3037T C14408T C21575T A23403G G25563T C27128T C27964T

MT873053
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00217/2020
 C241T C1498T C2416T C3037T A5725G C14408T G14773T C16887T A23403G C24096A G25563T

MT873060
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00789/2020
 AT1- C241T C1059T C3037T C12809T C14408T C17678T T21994C A22524T A23403G G25563T C26625T

MT873061
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00795/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T

MT873075
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00830/2020
 ATTAAA1- C241T C2416T C3037T T10216C C14408T G15007A A23403G G25563T G26233T G27967T

MT873111
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00216/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T C26447T

MT873114
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00829/2020
 ATTAAA1- C241T C2416T C3037T C14408T G19900T A23403G G25563T G26233T

MT873118
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00827/2020
 ATTA1- C241T C2416T C3037T C14408T G18546T A23403G G25563T G26233T

MT873136
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00831/2020
 ATTA1- C241T C2416T C3037T T10216C C14408T G15007A A18722T A23403G G25563T G26233T

MT873137
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00796/2020
 ATTAAA1- C241T C1059T C3037T G11417T C14408T A23403G G25563T

MT873145
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00845/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873146
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00828/2020
 ATTAAA1- G105T C241T C2102T C3037T C14408T C18877T G19962A G21724T A23403G G25563T G29773T

MT873185
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00811/2020
 ATT1- G105T C241T C3037T C7504T C14408T C17822T C18877T A23403G G25563T G26775T

MT873198
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00823/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T

MT873202
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00812/2020
 ATTAAA1- G105T C241T C3037T C7504T C14408T C18877T A23403G G25563T G26775T

MT873244
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00799/2020
 ATTAA1- C241T C2416T C3037T T10216C C14408T C21575T A23403G G25563T G26233T

MT873268
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00848/2020
 AT1- C241T C2416T C3037T T10216C C14408T A23403G A24260T G25563T G26233T G26899A C29250T

MT873282
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00832/2020
 ATTAA1- C241T C3037T C13730T C14408T A23403G G25429T C28849T

MT873289
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00826/2020
 ATTAAA1- C241T C1059T C3037T T8005C T13006C C14408T A23403G G25563T C25688T T26102C

MT873292
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00824/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T C29171T

MT873311
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00834/2020
 AT1- C241T C2416T C3037T T10216C C14408T A23403G G25563T G26233T

MT873327
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00219/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873345
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00809/2020
 ATTAA1- C241T C2416T C3037T C14408T T20466C A23403G G25563T

MT873365
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00817/2020
 ATTA1- C241T C1059T C3037T C14408T C16260T C18555T G21604T A23403G G25563T C28821A

MT873366
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00836/2020
 ATTAAA1- C241T C1059T C3037T C14408T C16260T C18555T G21604T A23403G G25563T C28821A

MT873380
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00816/2020
 ATTAAA1- C241T C2416T C3037T T5260C C14408T A23403G G25563T G26233T G26520A A28792T

MT873403
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00862/2020
 AT1- C241T C2416T C3037T C14408T A23403G G25563T

MT873437
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00801/2020
 ATTAAA1- C241T C1059T C3037T G11417T C14408T A23403G G25563T

MT873448
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00798/2020
 A1- C241T C3037T C14408T A23403G C28603T G28899T

MT873468
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00791/2020
 ATTA1- C241T C1059T C3037T C14408T C16260T C18555T G21604T A23403G G25563T C28821A

MT873482
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00855/2020
 ATTAAA1- C241T C2416T C3037T C14408T T20466C A23403G G25563T

MT873485
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00814/2020
 ATTAAA1- C241T C2062T C2416T C3037T C14408T G17988A C18928T A23403G G25563T G26233T

MT873486
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00840/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G24751T G25563T

MT873496
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00218/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873509
 2020-04-13 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00853/2020
 ATTAAA1- C241T T833C C1059T C3037T G4255A C14408T C16616T A23403G G25563T C27964T C27999T

MT937812
 2020-04-13 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2416T C2706T C3037T C14408T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT937813
 2020-04-13 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C3267T C14408T A23403G G25563T C27644T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT967904
 2020-04-13 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6513/2020
 C241T C1059T C3037T C10507T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT967971
 2020-04-13 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6517/2020
 A2480G C2558T C5850T C10908T G11083T C14805T G26144T C27998A AAAAAAAAAAAAAAAAAAAAA29883-

MW001236
 2020-04-13 2020-09-14
 United States SARS-CoV-2/human/USA/211-ETA/2020
 C241T C1059T C3037T C4113T C11916T C14408T G17443A C18998T AG21792TT A23403G G24197T G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

MW001237
 2020-04-13 2020-09-14
 United States SARS-CoV-2/human/USA/211-ETA-TCE/2020
 C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G24197T G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

MW001239
 2020-04-13 2020-09-14
 United States SARS-CoV-2/human/USA/211-OP-TCE/2020
 C241T C1059T C3037T C4113T C6285T C9615T C11916T C14408T C18998T A23403G G24197T G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

MW023502
 2020-04-13 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1231/2020
 ATTAAAGGT1- C241T C1059T C1387T C3037T C14408T A20755C A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

NMDC60013161
 2020-04-13 2020-06-01
 China hCoV-19/Guangzhou/ID176/2020
 C241T C3037T G6101A C14408T C15324T A23403G

NMDC60013164
 2020-04-13 2020-06-01
 China hCoV-19/Guangzhou/ID172/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T C15324T A23403G G29868R

NMDC60013174
 2020-04-13 2020-06-01
 China hCoV-19/Guangzhou/ID163/2020
 C241T C3037T C14408T C15324T A23403G

NMDC60013175
 2020-04-13 2020-06-01
 China hCoV-19/Guangzhou/ID175/2020
 ATTAAAG1- C241T C3037T C14408T C15324T A23403G T29851A TG29867CA

NMDC60013176
 2020-04-13 2020-06-01
 China hCoV-19/Guangzhou/ID137/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T C15324T A23403G

NMDC60013194
 2020-04-13 2020-06-01
 China hCoV-19/Guangzhou/ID139/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T C15324T A23403G A29850G

NMDC60013196
 2020-04-13 2020-06-01
 China hCoV-19/Guangzhou/ID177/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T C15324T A23403G G29868R

NMDC60013199
 2020-04-13 2020-06-01
 China hCoV-19/Guangzhou/ID138/2020
 ATTAAAGGTTTATACCT1- C241T G1126C C3037T G11055A C14408T C15324T A23403G G29868R

EPI_ISL_425258
 2020-04-14 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73976/2020
 C241T C527T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_425259
 2020-04-14 2020-04-14
 United Kingdom hCoV-19/England/CAMB-73985/2020
 C241T C1059T C3037T C8713A C14408T T16554C A23403G G25563T

EPI_ISL_425261
 2020-04-14 2020-04-14
 United Kingdom hCoV-19/England/CAMB-739A3/2020
 A2480G C2558T G11083T C14805T G26144T G27561T

EPI_ISL_425280
 2020-04-14 2020-04-14
 United Kingdom hCoV-19/England/CAMB-74359/2020
 C241T C3037T C14408T T19839C A23403G T25464C C26681T A27044C GGG28881AAC

EPI_ISL_425439
 2020-04-14 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76F17/2020
 C241T G1820A C3037T C14408T A23403G G25540A G28514T

EPI_ISL_425440
 2020-04-14 2020-04-14
 United Kingdom hCoV-19/England/CAMB-76F35/2020
 C241T C3037T A12390G C14408T A23403G GGG28881AAC

EPI_ISL_429845
 2020-04-14 2020-04-24
 United States hCoV-19/USA/WI-GMF-01047/2020
 C241T C1059T C3037T C6363T C9866T C14408T A14747G A20755C A23403G C25480T G25563T A27763G

EPI_ISL_429874
 2020-04-14 2020-04-24
 Italy hCoV-19/env/Italy/HSacco-1/2020
 C241T C3037T C14408T A23403G

EPI_ISL_430092
 2020-04-14 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5633S/2020
 C241T C3037T C3140T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430093
 2020-04-14 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5634S/2020
 C241T C3037T C3140T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430094
 2020-04-14 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5635S/2020
 C241T C3037T C3140T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430095
 2020-04-14 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5642S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430096
 2020-04-14 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5643S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430097
 2020-04-14 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5644S/2020
 C241T C3037T C14408T A23403G C26750T T27374C GGG28881AAC

EPI_ISL_430098
 2020-04-14 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII5654S/2020
 C241T C3037T C3140T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430100
 2020-04-14 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII6027S/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_430101
 2020-04-14 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII6031S/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_430102
 2020-04-14 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII6039S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_430103
 2020-04-14 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII6043S/2020
 C241T C3037T C13356T C14408T G20274T A23403G GGG28881AAC

EPI_ISL_430697 MT641760
 2020-04-14 2020-04-27
 Australia SARS-CoV-2/human/AUS/VIC1344/2020
 C241T C1059T C3037T C14408T G22017K G22487R C22523S A23403G G25563T

EPI_ISL_433070
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1523/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433071
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1525/2020
 C241T C1938T C3037T C14408T A15303G C18555T A23403G G25244C G25429T C29144T

EPI_ISL_433095
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1631/2020
 C241T G2883A C3037T C3619T C14408T A20268G A23403G G29734C

EPI_ISL_433096
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1632/2020
 C241T G2883A C3037T C3619T C14408T A20268G A23403G C27923T G29734C

EPI_ISL_433099
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1640/2020
 C241T C3037T C14408T A23403G G24390T C25433T G29440T

EPI_ISL_433104
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1647/2020
 C241T C344T C3037T C6573T C14408T A23403G C25528T G27715T GGG28881AAC

EPI_ISL_433107
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1655/2020
 C241T C313T C3037T C13994T C14408T A23403G C24863T G25135T G28086T GGG28881AAC

EPI_ISL_433108
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1656/2020
 C241T C3037T T5161A C14408T T17126C A20268G A23403G C28844G G29742T

EPI_ISL_434013
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7C227/2020
 G373A A3763G T3931C C4069T G11083T C14805T C14931T C16466T G26144T G28857T

EPI_ISL_434021
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7C2AF/2020
 C241T C3037T C3373A C11195T C14408T A23403G A25946G GGG28881AAC

EPI_ISL_434022
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7C2BE/2020
 C241T C3037T C14408T C17010T A23403G G27709T GGG28881AAC C29281T

EPI_ISL_434029
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7C333/2020
 C241T C3037T G8612T C14408T C19484T A23403G GGG28881AAC

EPI_ISL_434032
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7C360/2020
 G1440A G2891A C19484T A27669G

EPI_ISL_434034
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7C38E/2020
 C241T G2626A C3037T C14408T C14805T C21691T A23403G GGG28881AAC

EPI_ISL_434036
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7C3AC/2020
 C241T G2626A C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_434038
 2020-04-14 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7C3CA/2020
 C241T C3037T G10262A G12131A C14408T T19839C C22995T A23403G G25471C A27669G GGG28881AAC

EPI_ISL_434504
 2020-04-14 2020-04-29
 Luxembourg hCoV-19/Luxembourg/LNS2458393/2020
 C241T C1059T A2499C C3037T C14408T A23403G G25563T T27384C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_434572
 2020-04-14 2020-04-30
 Czech Republic hCoV-19/Czech Republic/2308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGT1- C241T C3037T C14408T A23403G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_434597 MT418886
 2020-04-14 2020-04-30
 United States SARS-CoV-2/human/USA/VA-DCLS-0105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T G2447A C3037T C14408T A23403G G25563T C25688A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_434598 MT418887
 2020-04-14 2020-04-30
 United States SARS-CoV-2/human/USA/VA-DCLS-0106/2020
 ATTAAA1- C241T C1059T G2447A C3037T C14408T A23403G G25563T C25688A G27420T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_434599
 2020-04-14 2020-04-30
 United States hCoV-19/USA/VA-DCLS-0107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A38R C241T C1059T G2447A C3037T C14408T A21562- A23403G G25563T C25688A

EPI_ISL_434600 MT418888
 2020-04-14 2020-04-30
 United States SARS-CoV-2/human/USA/VA-DCLS-0108/2020
 AT1- C241T C1059T G2447A C3037T C14408T A23403G G25563T C25688A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_434667
 2020-04-14 2020-04-30
 Sweden hCoV-19/Sweden/20-07298/2020
 C241T C3037T C14408T A23403G GGG28881AAC G28895T

EPI_ISL_435054 MT435084
 2020-04-14 2020-05-02
 India SARS-CoV-2/human/IND/GBRC7/2020
 C241T C3037T C14408T A23403G

EPI_ISL_435493
 2020-04-14 2020-05-05
 United States hCoV-19/USA/NY-NYUMC426/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_435495
 2020-04-14 2020-05-05
 United States hCoV-19/USA/NY-NYUMC428/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435510
 2020-04-14 2020-05-05
 United States hCoV-19/USA/NY-NYUMC443/2020
 C241T C629T C1059T C1917T C2880T C3037T C4048T C14408T A21137G A23403G G25563T C26681T

EPI_ISL_435513
 2020-04-14 2020-05-05
 United States hCoV-19/USA/NY-NYUMC446/2020
 C241T C1059T C1917T C3037T C14408T G22225T A23403G G25563T

EPI_ISL_435687
 2020-04-14 2020-05-05
 Singapore hCoV-19/Singapore/82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C6310A C6312A G11083T C13730T C19524T C23929T G25244K C28311T C28887T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_436452
 2020-04-14 2020-05-06
 India hCoV-19/India/NCDC-4208/2020
 C6312A G11083T C13730T G18803T C23929T AG24389MS C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436599 MT706413
 2020-04-14 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T T8391C C14937T C20148T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436600 MT706414
 2020-04-14 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T C14937T C20148T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436605 MT706419
 2020-04-14 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1213T T2116A G11083T G17211T G23518A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436715
 2020-04-14 2020-05-07
 Russia hCoV-19/Russia/Moscow-GCBL1/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C17745T A23403G A28043G G28727T GGG28881AAC A29875G AAAA29877TCGG A29883G AAAAAAAAAAAAAAAAAAA29885GCG

EPI_ISL_436716
 2020-04-14 2020-05-07
 Russia hCoV-19/Russia/Moscow-GCBL2/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C17745T A23403G A28043G G28727T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

EPI_ISL_436717
 2020-04-14 2020-05-07
 Russia hCoV-19/Russia/Moscow-GCBL3/2020
 ATTAAAGGTTTATAC1- C241T C3037T A5116C C14408T C17745T C19140T A23403G A28043G G28727T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

EPI_ISL_436921 MT444619
 2020-04-14 2020-05-07
 United States SARS-CoV-2/human/USA/UT-02221/2020
 C241T T833C C1059T C3037T C14408T A22320G A23403G G25563T C27964T

EPI_ISL_436935 MT444633
 2020-04-14 2020-05-07
 United States SARS-CoV-2/human/USA/UT-02244/2020
 AT1- C241T C3037T C5184T C14408T A23403G C26256T C29668T

EPI_ISL_437188
 2020-04-14 2020-05-08
 Indonesia hCoV-19/Indonesia/EJ-ITD3590NT/2020
 C241T C3037T C14120T C14408T C18877T C21909G A23403G G23593T G25563T C26735T

EPI_ISL_437300
 2020-04-14 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG11/2020
 C241T A23403G C27046T G28881A G29759T

EPI_ISL_437380
 2020-04-14 2020-05-08
 United States hCoV-19/USA/MN-MDH-564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_437381
 2020-04-14 2020-05-08
 United States hCoV-19/USA/MN-MDH-578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T A5309G G11108A C14408T C21642T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437382
 2020-04-14 2020-05-08
 United States hCoV-19/USA/MN-MDH-585/2020
 ATTAA1- C241T C1059T C3037T A4838G C14408T A23403G G25563T G26262A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_437403 MT450889
 2020-04-14 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0187/2020
 C241T C1059T C1917T C3037T C14408T A23403G G25563T G29431T

EPI_ISL_437417 MT450903
 2020-04-14 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C2416T C3037T C14408T A23403G G25563T G26233T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_437418 MT450904
 2020-04-14 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

EPI_ISL_437700
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah177/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437701
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah178/2020
 C8782T G22468T T28144C G28878A G29742A

EPI_ISL_437702
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah179/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437703
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah181/2020
 C241T C3037T A5618G C11665T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437704
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah183/2020
 C241T C2790T C3037T C12789T C14408T C16915T C18877T G20578T A23403G T24202C G25563T C26735T

EPI_ISL_437705
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah188/2020
 G4180A A4235T C8782T G22468T C26464T T28144C G28878A G29742A

EPI_ISL_437706
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah189/2020
 C241T C3037T C10582T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_437707
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah190/2020
 C241T C3037T T7292C C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437708
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah193/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437709
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah194/2020
 C241T C3037T C7113T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437710
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah196/2020
 C241T C3037T C10582T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_437711
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah198/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T G27047A C28000T

EPI_ISL_437712
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah202/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C28000T

EPI_ISL_437713
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah203/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C28000T G29742A

EPI_ISL_437714
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah204/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C28000T

EPI_ISL_437715
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah208/2020
 C241T C3037T C10789T C14408T C17474T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_437716
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah211/2020
 C241T C3099T C7765T C14408T C18877T A23403G

EPI_ISL_437717
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah213/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C28000T

EPI_ISL_437718
 2020-04-14 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah215/2020
 C241T C2790T C3037T C14408T C16915T C18877T G20578T A23403G T24202C G25563T C26735T

EPI_ISL_437769 MT482116
 2020-04-14 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0130/2020
 A1- C241T C3037T C4540T C7600T C14408T C15324T A23403G

EPI_ISL_437770 MT482117
 2020-04-14 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0131/2020
 ATTAAAG1- C241T C1059T C3037T C14408T C21575T A23403G C25318T G25563T C29870A

EPI_ISL_437771 MT482118
 2020-04-14 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0132/2020
 AT1- C241T C1059T C3037T C8722T C14408T C17518T C21952G A23403G G25563T

EPI_ISL_437772 MT482119
 2020-04-14 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0133/2020
 ATTA1- C241T C1059T C3037T C14408T C16575T A23403G G25563T T26861C G28212A G29449T C29870A

EPI_ISL_437790 MT482137
 2020-04-14 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0157/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T C22624T A23403G G25563T

EPI_ISL_437791 MT482138
 2020-04-14 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0158/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_437792 MT482139
 2020-04-14 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T G29868A

EPI_ISL_437793 MT482140
 2020-04-14 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C14408T C18246T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_438905
 2020-04-14 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16887T C17934T C19170T G19509A G20134T G21494A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438908
 2020-04-14 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2447/2020
 C241T C1427T C3037T C14408T C16289T A23403G T25222C G25429T C26060T C27167T

EPI_ISL_438910
 2020-04-14 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9808T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438916
 2020-04-14 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438965
 2020-04-14 2020-05-12
 Japan hCoV-19/Japan/Donner21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T9640C T9710G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439282
 2020-04-14 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3554/2020
 C241T C3037T C10798A C13862T C14408T A23403G G24821T C28836T

EPI_ISL_439283
 2020-04-14 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3555/2020
 C241T C3037T A5136G C14408T A20268G A23403G C28854T

EPI_ISL_439284
 2020-04-14 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3557/2020
 C241T C3037T C3543T C14408T G15202T C16289T G20580T A23403G G25429T C27800T

EPI_ISL_439285
 2020-04-14 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3558/2020
 C241T C3037T C3543T C14408T G15202T C16289T G20580T A23403G G25429T C27800T

EPI_ISL_439286
 2020-04-14 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3559/2020
 C241T C3037T C3543T C14408T C16289T A23403G G25429T C27800T

EPI_ISL_439287
 2020-04-14 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3566/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_439832
 2020-04-14 2020-05-12
 United Kingdom hCoV-19/England/LIVE-99F69/2020
 C241T C3037T G6123A C7735T C14408T A23403G GGG28881AAC

EPI_ISL_443314
 2020-04-14 2020-05-12
 France hCoV-19/France/IDF6073/2020
 C241T C1059T C3037T C9891T C14408T C16230T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_443586
 2020-04-14 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23086T A23403G A27237G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_444185
 2020-04-14 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4D68/2020
 C241T C3037T C8240T C14408T A23403G G25429T

EPI_ISL_444188
 2020-04-14 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4FAE/2020
 C241T C3037T T12739C C14408T C20936T A23403G GGG28881AAC

EPI_ISL_444189
 2020-04-14 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4FDB/2020
 C241T C3037T C9979T C14408T A23403G GGG28881AAC

EPI_ISL_444190
 2020-04-14 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4FEA/2020
 C241T G2164A C3037T C14408T G15226A A23403G GGG28881AAC

EPI_ISL_444191
 2020-04-14 2020-05-13
 United Kingdom hCoV-19/England/LOND-D4FF9/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_444192
 2020-04-14 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5004/2020
 C241T C3037T A10948G A11117G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_444193
 2020-04-14 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5013/2020
 C241T G677A C3037T A3381G G6463T T9172C A10948G T14336C C14408T G17427T A23403G GGG28881AAC

EPI_ISL_444194
 2020-04-14 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5022/2020
 C241T C1059T C3037T C14408T C15277T A23403G G24368T G25563T G25687T

EPI_ISL_444195
 2020-04-14 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5031/2020
 C241T C1059T C3037T C12621T C14408T C18171T A23403G G24368T G25563T T27977G

EPI_ISL_444196
 2020-04-14 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5040/2020
 C241T A2111G C3037T C8074T C9438T C14408T C20133T A23403G GGG28881AAC

EPI_ISL_444203
 2020-04-14 2020-05-13
 United Kingdom hCoV-19/England/LOND-D512F/2020
 C241T C1627T C3037T C9073T C9534T C14408T A23403G

EPI_ISL_444209
 2020-04-14 2020-05-13
 United Kingdom hCoV-19/England/LOND-D530B/2020
 C241T C1469T C3037T T7976C C14408T C21772T A23403G

EPI_ISL_444227
 2020-04-14 2020-05-13
 United Kingdom hCoV-19/England/LOND-D54DB/2020
 G1440A G2891A A27669G

EPI_ISL_444291
 2020-04-14 2020-05-13
 United Kingdom hCoV-19/England/BIRM-5E391/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444452
 2020-04-14 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80F65/2020
 C241T GTCATGTTA510- C3037T C4002T C6696T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_444787
 2020-04-14 2020-05-14
 United States hCoV-19/USA/NY-NYUMC670/2020
 C106T C2933T C8782T C17747T A17858G C18060T A24694T T28144C

EPI_ISL_445232
 2020-04-14 2020-05-15
 Sweden hCoV-19/Sweden/20-07243/2020
 C241T C1059T C3037T C8106T C14408T A23403G G24368T G25563T

EPI_ISL_446025
 2020-04-14 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2DDF7/2020
 C241T C3037T T5573C C6380T G11801A C14408T C17375Y T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_446027
 2020-04-14 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-2DE21/2020
 C241T C3037T C14408T C14741T A23403G G27008C

EPI_ISL_446594
 2020-04-14 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-31FBE/2020
 AT1- C241T C3037T T4186C G11801A G12191T C14408T T19839C G22468T A23403G G25552T GGG28881AAC

EPI_ISL_446741
 2020-04-14 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-3312F/2020
 ATTA1- C241T C3037T C4780T C14408T G21624T A23403G G25598T GGG28881AAC

EPI_ISL_447343
 2020-04-14 2020-05-17
 Israel hCoV-19/Israel/2113256/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447350
 2020-04-14 2020-05-17
 Israel hCoV-19/Israel/2107681/2020
 C241T C3037T C11916T C14408T C18877T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447351
 2020-04-14 2020-05-17
 Israel hCoV-19/Israel/2107137/2020
 C241T C1059T C3037T C7765T C11916T C14408T C18998T A23403G G24000T G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447352
 2020-04-14 2020-05-17
 Israel hCoV-19/Israel/2107132/2020
 C241T C3037T G5253A C14408T A23403G C25350T AAAAAAAAAAAA29892-

EPI_ISL_447468
 2020-04-14 2020-05-17
 Israel hCoV-19/Israel/130710067/2020
 C241T C2416T C3037T C14408T C20719T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447581
 2020-04-14 2020-05-17
 India hCoV-19/India/CCMB_K600B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C1707T C6310A C6312A G11083T C13730T A17959G C19524T C23929T A26319G C28311T

EPI_ISL_447582
 2020-04-14 2020-05-17
 India hCoV-19/India/CCMB_K601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T C23929T C28311T

EPI_ISL_447863
 2020-04-14 2020-05-18
 India hCoV-19/India/CCMB_K599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A6081G C6312A G11083T C13730T G19679T C23929T G25691T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_447865
 2020-04-14 2020-05-18
 India hCoV-19/India/CCMB_K499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1820A A1846T C6312A G11083T C13730T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_447866
 2020-04-14 2020-05-18
 India hCoV-19/India/CCMB_K500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C506T C6312A G8571T G11083T C13730T G17754T C19881T C23367T C23929T G25726T C27849T G28077T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_448288
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8BD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C12915T C14408T C16466Y A20268G A20715R A23403G G25534K

EPI_ISL_448289
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8BEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C13743Y C14408T A15988W G18716K T19638Y C19688Y G22932S A23403G C25669Y C25728T GGG28881AAC

EPI_ISL_448290
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8BFE/2020
 ATTAAAGGTT1- C40T T65Y C241T C3037T G6961T A13640R C14408T G17814T A19810G A20268G A23403G C29686T

EPI_ISL_448291
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8C0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2940T C3037T C8814T C14408T A23403G

EPI_ISL_448297
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8CA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T21479Y A23403G A24232G G25429T

EPI_ISL_448301
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8CEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_448867
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/SHEF-C82D1/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_448870
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/SHEF-C9100/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448874
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/SHEF-CA3BE/2020
 C241T C3037T C10319T C14408T C21614T A23403G G28373T

EPI_ISL_448880
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/SHEF-CBE70/2020
 C241T C1190T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_449101
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8077/2020
 C241T C313T G1820A C3037T C6541T C14408T A23403G GGG28881AAC A29242G

EPI_ISL_449661
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4BE6/2020
 C241T C854T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_449662
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4BF5/2020
 C241T G677A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_449663
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4C01/2020
 C241T G2164A C3037T G4504T C14408T A23403G GGG28881AAC

EPI_ISL_449664
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4C10/2020
 C241T C3037T C14408T A23403G C28194T GGG28881AAC C29095T

EPI_ISL_449665
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4C2F/2020
 C241T G2164A C3037T G4504T C14408T A23403G GGG28881AAC

EPI_ISL_449666
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4C3E/2020
 C241T C3037T C14408T A23403G C27972T GGG28881AAC

EPI_ISL_449667
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4C4D/2020
 C241T C3037T C5832T C14408T A23403G C25703T GGG28881AAC

EPI_ISL_449668
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4C5C/2020
 C241T G2164A C3037T T5338C C14408T A23403G GGG28881AAC

EPI_ISL_449688
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/LOND-D51F2/2020
 C241T C2704T C3037T C14408T C17410T A23403G ATA27721- GGG28881AAC

EPI_ISL_449692
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/LOND-D523B/2020
 C241T C3037T C14408T A23403G C23481T GGG28881AAC

EPI_ISL_449706
 2020-04-14 2020-05-19
 United Kingdom hCoV-19/England/LOND-D5611/2020
 C241T C3037T C14408T A23403G C27494T GGG28881AAC

EPI_ISL_449925 MT641589
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S755/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_449926 MT641594
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S756/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_449929 MT641529
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S759/2020
 G1401A C7420T C8782T T13438C C15126T C17747T A17858G C18060T T28144C

EPI_ISL_449930 MT641601
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S760/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_449931 MT641489
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S761/2020
 T13C C3311A AGA4015TCT C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_449932 MT641641
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S762/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_449933 MT641558
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S763/2020
 C241T C1059T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_449934 MT641576
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S764/2020
 C241T C1059T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_449935 MT641563
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S765/2020
 C241T C1059T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_449936 MT641559
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S766/2020
 C241T C1059T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_449937 MT641626
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S767/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_449938 MT641573
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S768/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29835T

EPI_ISL_449939 MT641498
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S769/2020
 C241T C1059T C3037T C11005T C14408T A23403G G25563T C28725T G29553A

EPI_ISL_449943 MT641614
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S773/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_449944 MT641615
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S774/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_449945 MT641622
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S775/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_449946 MT641611
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S776/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_449947 MT641621
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S777/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_449948 MT641602
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S778/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_449949 MT641612
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S779/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_449951 MT641618
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S781/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_449954 MT641575
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S784/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_449955 MT641635
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S785/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_449956 MT641630
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S786/2020
 C8782T T11561C C17747T A17858G C18060T T28144C

EPI_ISL_449957 MT641547
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S787/2020
 C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T

EPI_ISL_449964 MT641561
 2020-04-14 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S794/2020
 G1401A C8782T C17747T A17858G C18060T C21997T T27292C T28144C

EPI_ISL_449965
 2020-04-14 2020-05-19
 United States hCoV-19/USA/WA-S795/2020
 C884T G1397A G8653T G11083T A19073G G27915T T28688C C28868T C29077T G29468T G29742T

EPI_ISL_449999
 2020-04-14 2020-05-19
 United States hCoV-19/USA/WA-S829/2020
 C241T C1059T C3037T A4166G C14408T A23403G G25563T C27945T

EPI_ISL_450519
 2020-04-14 2020-05-21
 Latvia hCoV-19/Latvia/019/2020
 C36G C241T C3037T C4202T C14408T C15324T A23403G G26713T

EPI_ISL_450705 MT506890
 2020-04-14 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T T14073C C14408T A23403G A23947G G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450707
 2020-04-14 2020-05-22
 United States hCoV-19/USA/IL-UW-353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450710 MT506895
 2020-04-14 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450711
 2020-04-14 2020-05-22
 United States hCoV-19/USA/IL-UW-357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450720
 2020-04-14 2020-05-22
 United States hCoV-19/USA/IL-UW-366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T28723C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450722
 2020-04-14 2020-05-22
 United States hCoV-19/USA/IL-UW-368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T C21805T A23403G A26183G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450813
 2020-04-14 2020-05-22
 Sweden hCoV-19/Sweden/20-07299/2020
 C241T C3037T C3619T C7765T C14408T A23403G GGG28881AAC

EPI_ISL_451180
 2020-04-14 2020-05-23
 Belgium hCoV-19/Belgium/UGent-69/2020
 C241T A1193G G1719T C3037T C10319T C14408T C15141T C15324T A23403G

EPI_ISL_451181
 2020-04-14 2020-05-23
 Belgium hCoV-19/Belgium/UGent-70/2020
 C241T C3037T C14408T A20268G A20437G A23403G

EPI_ISL_452035
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-163/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_452037
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-167/2020
 C241T C1059T C3037T G7873T C10582T C12400T C14408T A23403G G25563T

EPI_ISL_452039
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-169/2020
 C241T C1059T C1302T C3037T C7164T A9280G C11074T C13959T C14408T A23403G G25563T C29095T

EPI_ISL_452042
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-173/2020
 C241T C3037T C8326T C14408T G20398A A23403G A26530G

EPI_ISL_452043
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-174/2020
 C241T C3037T C6026T A12759G C14408T A23403G GGG28881AAC

EPI_ISL_452045
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-177/2020
 C241T C1059T C1302T C3037T C7164T A9280G C9520A C11074T C12400T C14408T A20142G A23403G G25563T C29095T

EPI_ISL_452048
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-181/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_452049
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-183/2020
 C241T C1059T C3037T C4113T C4582T T8788C G8831T C11514T C13458T C14408T A23403G G25563T G26951A A29677G

EPI_ISL_452050
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-186/2020
 C241T C1059T C3037T C8240T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_452052
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-189/2020
 C241T C1059T C3037T C4321T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_452053
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-190/2020
 C241T C1059T C3037T C6539T C7390T C11572T C14408T A23403G G25563T

EPI_ISL_452054
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-191/2020
 T99C C241T C1059T C3037T T8134C C14408T A23403G G25563T

EPI_ISL_452055
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-192/2020
 C241T C1059T C3037T C12115T C12781T C14408T C15842A A23403G G25563T

EPI_ISL_452092
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-260/2020
 C241T C1059T C3037T C9803T C14408T A23403G G25563T

EPI_ISL_452093
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-262/2020
 C241T C1059T C3037T C14408T T20708C A23403G G25563T

EPI_ISL_452094
 2020-04-14 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-263/2020
 C241T C3037T C7834T C14408T A23403G

EPI_ISL_452151
 2020-04-14 2020-05-26
 Belgium hCoV-19/Belgium/20A49/2020
 ATTAAAGGTTTATACCTTCCCAG1- T25C C241T C710T C3037T C14408T C15324T A23403G G28690T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_452236
 2020-04-14 2020-05-27
 Sweden hCoV-19/Sweden/20-07394/2020
 C8782T G11230T G25218T T28144C G28167A G28878A G29742A

EPI_ISL_453056
 2020-04-14 2020-05-27
 United Kingdom hCoV-19/Scotland/CVR2491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C7926T G10981T G11083T C14805T C16887T G26144T C27600T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_453102
 2020-04-14 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB3991/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_453104
 2020-04-14 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB4006/2020
 C3787T A7958G G11944T C16362T G29734C C29784T

EPI_ISL_453105
 2020-04-14 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB4012/2020
 A187G C241T C3037T C14408T A23403G A26009G

EPI_ISL_453719
 2020-04-14 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C65DA/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_454290
 2020-04-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2370T C3037T A6308G C14408T A22671G A23403G A28920C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454291
 2020-04-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2370T C3037T A6308G C14408T A22671G A23403G A28920C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454292
 2020-04-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2370T C3037T A6308G C14408T T18168C A22671G A23403G A28920C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454293
 2020-04-14 2020-05-28
 Portugal hCoV-19/Portugal/PT0570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2370T C3037T A6308G C14408T G21724T A22671G A23403G A28920C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454498
 2020-04-14 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/16238/2020
 C1519T C8782T T9477A C14805T C24378T T25631C G25979T T28144C C28657T C28863T

EPI_ISL_454576
 2020-04-14 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/16183/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454661 MT534311
 2020-04-14 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1241/2020
 A12557G A16474G C24904T C25916T A27359G

EPI_ISL_454662 MT534312
 2020-04-14 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1242/2020
 ATTAAAGG1- T13Y T10129Y A12557G T15771H A16474G C24904T C25916T A27359G T29360K C29364M G29757K A29875W

EPI_ISL_454663 MT534313
 2020-04-14 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1243/2020
 A3138G A12557G A15498T C24904T C25916T A26927R A27359G C27925A

EPI_ISL_454664 MT534314
 2020-04-14 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1244/2020
 C6636Y A12557G C24904T C25916T A27359G

EPI_ISL_454665 MT534315
 2020-04-14 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1245/2020
 A1- A12557G C24904T C25916T A27359G

EPI_ISL_454666 MT534316
 2020-04-14 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1246/2020
 T13Y T10129Y A12557G T15771W C24904T C25916T A27359G

EPI_ISL_455274
 2020-04-14 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T A14788G C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455275
 2020-04-14 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C21658T G22468T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455276
 2020-04-14 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T T4885C C5365T C7765T C14408T C17690T C18526T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455278
 2020-04-14 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455279
 2020-04-14 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_456916
 2020-04-14 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4009/2020
 C241T C3037T C9223T C14408T A23403G

EPI_ISL_457062
 2020-04-14 2020-06-02
 United Kingdom hCoV-19/England/EXET-13546F/2020
 T9352C G11083T C14805T G26144T G27201T

EPI_ISL_457117
 2020-04-14 2020-06-02
 United Kingdom hCoV-19/England/EXET-135933/2020
 C241T C3037T C14408T A23403G G25273T GGG28881AAC C29013T

EPI_ISL_457201
 2020-04-14 2020-06-02
 United Kingdom hCoV-19/England/EXET-13613A/2020
 C241T C3037T C4784T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_457207
 2020-04-14 2020-06-02
 United Kingdom hCoV-19/England/EXET-1361A3/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC C29555T

EPI_ISL_457208
 2020-04-14 2020-06-02
 United Kingdom hCoV-19/England/EXET-1361B2/2020
 C241T G370T C3037T C5005T C14408T A23403G GGG28881AAC C29555T

EPI_ISL_457221
 2020-04-14 2020-06-02
 United Kingdom hCoV-19/England/EXET-136334/2020
 C241T C3037T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_457604
 2020-04-14 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C42C6/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_457611
 2020-04-14 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C65AD/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457648
 2020-04-14 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CB809/2020
 C241T C3037T C14408T G18803T C21614T A23403G

EPI_ISL_457676
 2020-04-14 2020-06-02
 United Kingdom hCoV-19/England/SHEF-D087A/2020
 C241T C835T C3037T C4002T G10097A C13536T C14408T A23403G C27513T GGG28881AAC

EPI_ISL_457683
 2020-04-14 2020-06-02
 United Kingdom hCoV-19/England/SHEF-D1C22/2020
 C241T C3037T G5206T T10162C C12970T C14408T A23403G C25603T GGG28881AAC

EPI_ISL_457685
 2020-04-14 2020-06-02
 United Kingdom hCoV-19/England/SHEF-D2EA3/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_457920
 2020-04-14 2020-06-02
 Kenya hCoV-19/Kenya/P629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9652T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458068
 2020-04-14 2020-06-03
 India hCoV-19/India/CCMB_O3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C6312A T9799C G11083T C13730T C19524T A21137G C23929T C28311T C28603T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458247
 2020-04-14 2020-06-04
 United States hCoV-19/USA/CA-SR0364/2020
 C241T C3037T C4320T C14408T A20268G A23403G C28854T

EPI_ISL_458774
 2020-04-14 2020-06-04
 United Kingdom hCoV-19/England/BRIS-128BA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A873G C3037T T3877A G4656A G7038A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458786
 2020-04-14 2020-06-04
 United Kingdom hCoV-19/England/BRIS-1286D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A873G C3037T T3877A G7038A C14408T A23403G T28251CTG CA28253TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460757
 2020-04-14 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460790
 2020-04-14 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11704T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460810
 2020-04-14 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7749T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460811
 2020-04-14 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T C19160T A20268G C20740A A23403G G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460813
 2020-04-14 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3518T C3923T T13006C C14408T C18979T A23403G A25195C G25563T C25688T A26565G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460814
 2020-04-14 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C2416T C3037T C4755T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460844
 2020-04-14 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G248T C3037T C14408T C23086T A23403G G26539T C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460850
 2020-04-14 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12348T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460851
 2020-04-14 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G248T C3037T G11083T C14408T C22311A C23086T A23403G G26539T C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460853
 2020-04-14 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T G16246T A20047G A23403G GGG28881AAC C29627T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460927
 2020-04-14 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T C1594T C3037T C9712T T10231C C11109T C14408T G15913T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461040
 2020-04-14 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5506T C14408T A23403G G25563T G26049T G28817T A29433G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461241
 2020-04-14 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T C26681T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461243
 2020-04-14 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25331C G25563T C26681T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461345
 2020-04-14 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462347
 2020-04-14 2020-06-08
 Singapore hCoV-19/Singapore/229/2020
 G219K C6310A C6312A G6463T G11083T C13730T C15279T C19524T C23929T G26763T C26894T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462380
 2020-04-14 2020-06-08
 Singapore hCoV-19/Singapore/262/2020
 C6310A C6312A G11083T C13730T C19524T G23426K C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462388
 2020-04-14 2020-06-08
 Singapore hCoV-19/Singapore/270/2020
 C6310A C6312A G8881R G11083T C13730T A13863C C19524T C23929T G25135K C28311T AAAAAAAAAAAA29892-

EPI_ISL_462394
 2020-04-14 2020-06-08
 Singapore hCoV-19/Singapore/276/2020
 C3261T C6310A C6312A G11083T C13730T C19524T C21846Y C23929T G24781C A27277W A27926G C28311T AAAAAAAAAAAA29892-

EPI_ISL_462399
 2020-04-14 2020-06-08
 Singapore hCoV-19/Singapore/281/2020
 C6310A C6312A C7735T G11083T C12484T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462403
 2020-04-14 2020-06-08
 Singapore hCoV-19/Singapore/285/2020
 C6310A C6312A G6463T G11083T C13730T C16948T C19524T C23929T G26763T C26894T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462408
 2020-04-14 2020-06-08
 Singapore hCoV-19/Singapore/290/2020
 C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462417
 2020-04-14 2020-06-08
 Singapore hCoV-19/Singapore/299/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462423
 2020-04-14 2020-06-08
 Singapore hCoV-19/Singapore/305/2020
 T1570C C6310A C6312A G11083T C13730T C17560A C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462424
 2020-04-14 2020-06-08
 Singapore hCoV-19/Singapore/306/2020
 C3261T C6310A C6312A G11083T C13730T C19217T C19524T C23929T A27926G C28311T A29714R AAAAAAAAAAAA29892-

EPI_ISL_462425
 2020-04-14 2020-06-08
 Singapore hCoV-19/Singapore/307/2020
 C6310A C6312A G11083T C13730T C19263T C19524T C23929T C28311T C28887T C29788M A29799R AAAAAAAAAAAA29892-

EPI_ISL_462426
 2020-04-14 2020-06-08
 Singapore hCoV-19/Singapore/308/2020
 C6310A C6312A A6366G G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462430
 2020-04-14 2020-06-08
 Singapore hCoV-19/Singapore/312/2020
 G2035T C6310A C6312A G11083T C13730T C19524T C23929T G27798T C28311T C28758T AAAAAAAAAAAA29892-

EPI_ISL_463474 MT642302
 2020-04-14 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S984/2020
 ATTAAAG1- C225T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463961
 2020-04-14 2020-06-11
 Canada hCoV-19/Canada/QC_AZ9/2020
 C241T G1161A C3037T C10198T C10747T C14408T C15324T A23403G C25433T

EPI_ISL_465180
 2020-04-14 2020-06-11
 United Kingdom hCoV-19/England/20169005204/2020
 C241T G2164A C3037T C14178T C14408T A16579R A23403G GGG28881AAC

EPI_ISL_465347
 2020-04-14 2020-06-11
 United Kingdom hCoV-19/England/20172045704/2020
 C92T C241T C3037T C14408T G21641T A23403G

EPI_ISL_466452
 2020-04-14 2020-06-11
 United Kingdom hCoV-19/England/201640252/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_466457
 2020-04-14 2020-06-11
 United Kingdom hCoV-19/England/20164056304/2020
 G61T G1640S A2480G C2558T C14805T G19947T G26144T

EPI_ISL_466508
 2020-04-14 2020-06-11
 United Kingdom hCoV-19/England/20166004704/2020
 C241T C3037T C14408T A23403G GGG28881AAC A29879C

EPI_ISL_466516
 2020-04-14 2020-06-11
 United Kingdom hCoV-19/England/20166006904/2020
 C241T C313T C3037T C11379T C14408T A23403G G28086T GGG28881AAC A29871G

EPI_ISL_466530
 2020-04-14 2020-06-11
 United Kingdom hCoV-19/England/20166012304/2020
 C241T C3037T C14408T C23086T A23403G A27237G GGG28881AAC A29874C

EPI_ISL_466550
 2020-04-14 2020-06-11
 United Kingdom hCoV-19/England/20166055904/2020
 A2480G C2558T G11083T C12815T C14805T G26144T G29639T

EPI_ISL_466562
 2020-04-14 2020-06-11
 United Kingdom hCoV-19/England/20166063504/2020
 C241T C3037T C6361T C14408T A23403G C25350T G25429T T27384Y

EPI_ISL_467516
 2020-04-14 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0166/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A19462G A23403G G25644T G25753T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467963
 2020-04-14 2020-06-16
 United States hCoV-19/USA/CA-SR0434/2020
 C241T C1059T C3037T C14408T C16762T A23403G G25563T G25660T

EPI_ISL_468316
 2020-04-14 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-504/2020
 C241T C3037T C12053T C14408T C20132T C20762T C22432Y A23403G G25088T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_468319
 2020-04-14 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-506/2020
 T25G C241T C3037T C14408T A23403G G23501T G25088T GGG28881AAC G29648T G29861A AAAAAAAAAAAAA29891-

EPI_ISL_468543 MT628266
 2020-04-14 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C4776T C8782T C17747T A17858G C18060T G28086T T28144C

EPI_ISL_468544 MT628267
 2020-04-14 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1615/2020
 C4776T C8782T C9491T C17747Y A17858G C18060T G28086K T28144C AAAAAA29898-

EPI_ISL_469015
 2020-04-14 2020-06-17
 Spain hCoV-19/Spain/Palma2590/2020
 C241T C3037T C8660T C14408T C19186T A20268G A23403G C23604A

EPI_ISL_469089
 2020-04-14 2020-06-17
 Singapore hCoV-19/Singapore/335/2020
 C4276T C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_470353
 2020-04-14 2020-06-18
 United Kingdom hCoV-19/England/CAMB-835F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14097T C14408T C18657T A23403G T25202K G25563T C27494Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470855
 2020-04-14 2020-06-19
 Australia hCoV-19/Australia/WA38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T A9301G A9409G C12809T C14408T A23403G G24977T G25742A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_471209
 2020-04-14 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2288A C3037T C14408T A23403G G28001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471739
 2020-04-14 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20715/2020
 C241T C1059T C3037T C14408T C18555Y A23403G G25563T AAAAAA29898-

EPI_ISL_471740
 2020-04-14 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20716/2020
 C241T C1059T C3037T G8548A C14408T C17550T C21855Y A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_472409
 2020-04-14 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111DF5/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_474356
 2020-04-14 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-3283A/2020
 ATTA1- C241T T1918C C3037T C14408T C18877T A23403G G25563T

EPI_ISL_475126
 2020-04-14 2020-06-23
 Sweden hCoV-19/Sweden/20-51065/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_476077
 2020-04-14 2020-06-25
 Hungary hCoV-19/Hungary/UD-8157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476503
 2020-04-14 2020-06-25
 Canada hCoV-19/Canada/QC_AG8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C539T C1059T C3037T C6384T C11916T C14408T C16338T G21641T A23403G G25563T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476983
 2020-04-14 2020-06-27
 Belgium hCoV-19/Belgium/rega-0414473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C G22017T A23403G C24099T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476984
 2020-04-14 2020-06-27
 Belgium hCoV-19/Belgium/rega-0414474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1326T C3037T C14408T A23403G G23909T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476985
 2020-04-14 2020-06-27
 Belgium hCoV-19/Belgium/rega-0414475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2497G G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476986
 2020-04-14 2020-06-27
 Belgium hCoV-19/Belgium/rega-0414476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T734C C3037T C4002T G10097A C14408T A20127G A23403G C23731T G23957A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476987
 2020-04-14 2020-06-27
 Belgium hCoV-19/Belgium/rega-0414477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3738T C4002T G10097A C13536T C14408T C18377T A23403G C23643T C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476988
 2020-04-14 2020-06-27
 Belgium hCoV-19/Belgium/rega-0414478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1835A C3037T C14408T C15324T A23403G G26450A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476989
 2020-04-14 2020-06-27
 Belgium hCoV-19/Belgium/rega-0414479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477915
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T T5104C C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477917
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16338T A23403G T26921Y C27046T G28817K GGG28881AAC CCACGCGGAGTACGAT29738- G29778A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477918
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477932
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3689A T11660A C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477933
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C3037T C14408T C16289T A23403G T25222C G25429T C26060T C27167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477934
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C26447T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477935
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6673C C14408T G15438T A20268G C21575T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477936
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7794G C14408T T19776C A23403G G25444T GGG28881AAC C29774Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477938
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21304A A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477939
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7047T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477940
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5079T C14408T C15324T C16767T A23403G T27576G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477941
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C26447T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477942
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A16579G C20270T A23403G G25563T C26111T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477944
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16741T A20268G A23403G G25305C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477958
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T T16990C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478732
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF3DD/2020
 C241T C3037T C14408T A23403G G24781T ATT27759- GGG28881AAC G29706T

EPI_ISL_478738
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF434/2020
 C241T C3037T A4166G C14408T C19488T C19813T A23403G GGG28881AAC

EPI_ISL_478744
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF4DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C3037T C4002T G10097A C13536T C14408T T21180K A23403G C23731T C24429M C27970T GGG28881AAC G29513T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_478746
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF4F8/2020
 C2910T G11083T G12793A C14805T T17247C A22852G G26144T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_478761
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF67A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14408T A23403G GGG28881AAC G29440A AAAAAAAAAAA29893-

EPI_ISL_478769
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF777/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29836T

EPI_ISL_478792
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF9DB/2020
 C241T C3037T C4582T C14408T A23403G GGG28881AAC

EPI_ISL_478931
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0A6B/2020
 C241T C3037T C13119T C14408T A23403G A25891C GGG28881AAC AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_478987
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-B101D/2020
 C241T C313T C3037T C3552T G4109A C8090T C14408T A23403G G25456T GGG28881AAC

EPI_ISL_479035
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-B16B1/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_479072
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1B1C/2020
 C241T C3037T C14408T T18831C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_479079
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1BFE/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_479084
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1CBF/2020
 C241T C3037T G12550A C14408T C16362T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_479110
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2076/2020
 C241T C3037T G10201T C14408T C19983T A23403G G28551T GGG28881AAC AAAAA29899-

EPI_ISL_479117
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2119/2020
 C241T C3037T G8548T C10798A C13862T C14408T A23403G A25457G C28836T AAAAAAAA29896-

EPI_ISL_479130
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2234/2020
 C241T C3037T G11801A C14408T T19839C A23403G G25552T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_479147
 2020-04-14 2020-06-30
 United Kingdom hCoV-19/England/OXON-B247A/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC AAAA29900-

EPI_ISL_479602
 2020-04-14 2020-06-30
 Singapore hCoV-19/Singapore/524/2020
 C6310A C6312A G11083T C13730T C19524T C22227Y C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_479603
 2020-04-14 2020-06-30
 Singapore hCoV-19/Singapore/525/2020
 C40T G626K C6310A C6312A G11083T C13730T C19524T G21987C C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_480300
 2020-04-14 2020-07-01
 Bulgaria hCoV-19/Bulgaria/17/2020
 C241T C3037T T11182C C14408T C14724T A23403G C26022T C28312T

EPI_ISL_480855 MT704022
 2020-04-14 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0204/2020
 A1- C241T C601T C2594A C3037T C8389T G9431A C14408T A23403G G25563T G27915A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_480856 MT704023
 2020-04-14 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0205/2020
 A1- C241T C1059T C3037T C14408T A23403G G25471C G25563T G26065T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_480857 MT704024
 2020-04-14 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25471C G25563T G26065T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_481551
 2020-04-14 2020-07-03
 Finland hCoV-19/Finland/14A16S15/2020
 C241T C1437T C2110A C3037T C14408T C19263T A23403G G29243A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481552
 2020-04-14 2020-07-03
 Finland hCoV-19/Finland/14A51S15/2020
 C241T C1059T C3037T G11083T C14408T A23403G G24368T G25563T G28003T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481553
 2020-04-14 2020-07-03
 Finland hCoV-19/Finland/14A67S15/2020
 C241T C589T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481554
 2020-04-14 2020-07-03
 Finland hCoV-19/Finland/14A69S15/2020
 C241T C1059T C3037T C14408T C19374T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482082
 2020-04-14 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-104180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C12513T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482346
 2020-04-14 2020-07-03
 United States hCoV-19/USA/OR-PROV-068/2020
 G11083T C14805T G26144T C29614T

EPI_ISL_483242
 2020-04-14 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0586-SAN/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C1887T C3037T G10540T G11083T C14408T A23403G G25563T A29558G

EPI_ISL_483245
 2020-04-14 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0590-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C1887T C3037T G10540T G11083T C14408T A23403G G25563T A29558G

EPI_ISL_483597
 2020-04-14 2020-07-08
 Singapore hCoV-19/Singapore/574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T312Y C6310A C6312A A10445R G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483609
 2020-04-14 2020-07-08
 Singapore hCoV-19/Singapore/586/2020
 ATTAAAGGTTTATACCTTCC1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_484589
 2020-04-14 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484590
 2020-04-14 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7162T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484598
 2020-04-14 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21304A A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485201
 2020-04-14 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A7706G C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485205
 2020-04-14 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485206
 2020-04-14 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A5875G C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485209
 2020-04-14 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G C23987T T24982C G25563T T27132C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485603
 2020-04-14 2020-07-09
 Austria hCoV-19/Austria/MUV_001/2020
 ATTAAAGGTTTAT1- C241T C3037T G11272A C14408T A20268G TTAAGAATATTGATGGTTATTTTAAAATATA22143- C22214A A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_485972
 2020-04-14 2020-07-10
 United States hCoV-19/USA/WA-UW-1764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C2450T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_486110
 2020-04-14 2020-07-10
 United States hCoV-19/USA/WA-UW-7399/2020
 ATTAAAGGT1- A12G TCCC18GGGA AAC34TTT C241T C1059T C3037T C6040T C14408T C23280T A23403G G25563T G29862A G29864A TG29867AA C29870A -29904AAAAAAAAAA

EPI_ISL_487463
 2020-04-14 2020-07-14
 Mali hCoV-19/Mali/M002823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2189T C6070T C8782T G11417T C26022T T28144C G28878A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487464
 2020-04-14 2020-07-14
 Mali hCoV-19/Mali/M002824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A963T C1059T C3037T C9559T C11916T C14408T A23403G G25563T C26858T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487465
 2020-04-14 2020-07-14
 Mali hCoV-19/Mali/M002826/2020
 ATTAAAGGTTTATACCTT1- C8782T G11417T T28144C G28878A G29742A TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_487466
 2020-04-14 2020-07-14
 Mali hCoV-19/Mali/M002830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C12465T C14408T G20102T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487636
 2020-04-14 2020-07-14
 United Kingdom hCoV-19/England/LOND-D9783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11537G C14408T G17964A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487637
 2020-04-14 2020-07-14
 United Kingdom hCoV-19/England/LOND-D9808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7561A C14408T A23403G T23581Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487638
 2020-04-14 2020-07-14
 United Kingdom hCoV-19/England/LOND-D96FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3969K T7120C C14408T C23271T A23403G G25563T G25720T C27964T G28781S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487641
 2020-04-14 2020-07-14
 United Kingdom hCoV-19/England/LOND-D963B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C5365T C7691Y C14408T G20578T A23403G G25563T C25658Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487646
 2020-04-14 2020-07-14
 United Kingdom hCoV-19/England/LOND-D96D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2731A C3037T C14362T C14408T C18647T A23403G C26753A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487722
 2020-04-14 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487833
 2020-04-14 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487840
 2020-04-14 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G A26009G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487848
 2020-04-14 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487901
 2020-04-14 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487909
 2020-04-14 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G448K C3037T C3543T T12388C C14408T C16289T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487974
 2020-04-14 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488238
 2020-04-14 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F2E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28369T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488453
 2020-04-14 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F37A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C14408T A23403G C29743Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489349
 2020-04-14 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-10444B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C4788T C14408T C18138T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489756 MT757016
 2020-04-14 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0347/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T A23403G G25471C G25563T G26065T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_489758 MT757018
 2020-04-14 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0349/2020
 AT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_489759 MT757019
 2020-04-14 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0350/2020
 ATT1- C241T C1059T C1917T C3037T C14408T C19032T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_489760 MT757020
 2020-04-14 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0351/2020
 ATT1- G174A C241T C1059T C1917T C3037T T8278C C14408T C16997T A23403G G25563T G29425T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_489761 MT757021
 2020-04-14 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0352/2020
 A1- C241T C1059T C3037T T4522C C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_489762 MT757022
 2020-04-14 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0353/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_489763 MT757023
 2020-04-14 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0354/2020
 A1- C241T C1059T C3037T C14408T C16338T A23403G G25563T C26151T TCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29729-

EPI_ISL_489764 MT757024
 2020-04-14 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0355/2020
 AT1- T13C G11083T C14805T C18086T G26144T G28842T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489765 MT757025
 2020-04-14 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0356/2020
 A1- C241T C601T C3037T C8389T C14408T A23403G G25563T G27915A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_489767 MT757027
 2020-04-14 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0358/2020
 AT1- C241T C1059T C3037T C10188T C12534T C14408T G22484T A23403G T24982C G25563T C27964T G28321T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_490563
 2020-04-14 2020-07-15
 United Kingdom hCoV-19/England/NOTT-1126AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T6515G C16762T C29272T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492353
 2020-04-14 2020-07-20
 United Kingdom hCoV-19/England/BRIS-185371D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17249T G17722T A23403G C27970Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492377
 2020-04-14 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18545C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17249T G17722T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492398
 2020-04-14 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T C26447Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492498
 2020-04-14 2020-07-20
 United Kingdom hCoV-19/England/LOND-D7BC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3236Y C8950T C14408T C18657T G22340K A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492500
 2020-04-14 2020-07-20
 United Kingdom hCoV-19/England/LOND-D7C1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C4410M C6336Y C6861T C14408T C19170T G19509A A23403G C25521Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492569
 2020-04-14 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130A53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492604
 2020-04-14 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130A80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G G25523T A25712T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492710
 2020-04-14 2020-07-20
 United Kingdom hCoV-19/England/BRIS-130A62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493416
 2020-04-14 2020-07-21
 Singapore hCoV-19/Singapore/656/2020
 ATTAAAGGTTTATAC1- C6310A C6312A G11083T C13730T C18486Y C19524T C23929T C28311T C28887T AAAAAAAAAAAA29892-

EPI_ISL_493418
 2020-04-14 2020-07-21
 Singapore hCoV-19/Singapore/658/2020
 ATTAAAGG1- C6310A C6312A G11083T C13730T A13863C G13879A C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_493422
 2020-04-14 2020-07-21
 Singapore hCoV-19/Singapore/662/2020
 AT1- A1103R C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_493423
 2020-04-14 2020-07-21
 Singapore hCoV-19/Singapore/663/2020
 ATT1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_493424
 2020-04-14 2020-07-21
 Singapore hCoV-19/Singapore/664/2020
 C3261T C6310A C6312A G11083T C12459T C13730T C19524T C23929T C27945T C28311T AAAAAAAAAAAA29892-

EPI_ISL_493550
 2020-04-14 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493551
 2020-04-14 2020-07-21
 United Kingdom hCoV-19/England/NOTT-11283F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2040T C2416T C3037T C4683T C9693T C12559T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493553
 2020-04-14 2020-07-21
 United Kingdom hCoV-19/England/NOTT-11285D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493554
 2020-04-14 2020-07-21
 United Kingdom hCoV-19/England/NOTT-11286C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495579
 2020-04-14 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S001097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497865
 2020-04-14 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10612C C14408T A21801G A23403G G28230T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508339
 2020-04-14 2020-08-04
 India hCoV-19/India/IK10/2020
 A4- C241T C3037T G7393T C14408T G15451A G22343A A23403G G24794T C27881T G29474T G29868A

EPI_ISL_508340
 2020-04-14 2020-08-04
 India hCoV-19/India/IK11/2020
 ATTAAAGG1- C241T C3037T C14408T A23403G A29771G G29868A

EPI_ISL_509088
 2020-04-14 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G T25729C AA29902-

EPI_ISL_509089
 2020-04-14 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20980A A23403G TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_511503
 2020-04-14 2020-08-08
 Portugal hCoV-19/Portugal/PT0953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G5230T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511898
 2020-04-14 2020-08-10
 Vietnam hCoV-19/Vietnam/VNHN_5152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T TTA516- C3037T C11824T C14408T C21057T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_512426
 2020-04-14 2020-08-11
 United Kingdom hCoV-19/England/PORT-2F5D50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12084T C14408T G17721A A23403G C24700T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512820 MT872498
 2020-04-14 2020-08-11
 Sierra Leone SARS-CoV-2/human/SLE/KGH-G-8669/2020
 AT1- C8782T G9802A C10818T A16512G G19735T C19951T G22468T C26299T G26428T T28144C G28878A G29742A

EPI_ISL_513515
 2020-04-14 2020-08-13
 Brazil hCoV19/Brazil/RJ-INCA-C12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C11074T C14358T C14408T A23403G G26918T T27299C GGG28881AAC T29148C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_513516
 2020-04-14 2020-08-13
 Brazil hCoV19/Brazil/RJ-INCA-C13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C13119T C14408T TCAGTGTGTTAA21601- A23403G G25135T T27299C GGG28881AAC T29148C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_513518
 2020-04-14 2020-08-13
 Brazil hCoV19/Brazil/RJ-INCA-C15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G315T C3037T G11083T C14408T A23403G T27299C GGG28881AAC T29148C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_513880 MW036041
 2020-04-14 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2486/2020
 ATTAAAGGT1- C241T C799T C1059T C2881T C3037T C14408T G15760A A19764G A23403G G23426T G25563T G26062T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513882 MW036042
 2020-04-14 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCA1- C225M C241T C1059T C2881T C3037T G6717A C14408T G15760A A19764G A23403G G23426T G25563T G26062T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515237
 2020-04-14 2020-08-18
 Canada hCoV-19/Canada/QC_AZ6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A257G C3037T C14408T C15324T A23403G C25096T C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515238
 2020-04-14 2020-08-18
 Canada hCoV-19/Canada/QC_BA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1150T C1223T C3037T C4886T C5310T C14408T G14829T A23403G A24782G G25563T G27561T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515241
 2020-04-14 2020-08-18
 Canada hCoV-19/Canada/QC_BB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10747T C14408T C15324T G20578T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515373
 2020-04-14 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0097/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_520734
 2020-04-14 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920663561/2020
 C8782T G11230T G25593C T28144C G28878A G29742A

EPI_ISL_525682
 2020-04-14 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-50104-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526216
 2020-04-14 2020-09-01
 Hungary hCoV-19/Hungary/MH-642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3426T C3686T T10567C C14408T A23403G G25074T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526466
 2020-04-14 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB1757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T G29543C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526468
 2020-04-14 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB1772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T G29543C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526475
 2020-04-14 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB4001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526537
 2020-04-14 2020-09-01
 United Kingdom hCoV-19/England/20164005604/2020
 ATTAAAGGTTTATACC1- C241T C3037T C12540T C14408T TTA20423- A23403G G28195A GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_526538
 2020-04-14 2020-09-01
 United Kingdom hCoV-19/England/20164006104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2388Y C3037T C3874T C14408T A23403G C23997Y GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_526539
 2020-04-14 2020-09-01
 United Kingdom hCoV-19/England/20164006804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C27874Y GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_526963
 2020-04-14 2020-09-02
 Colombia hCoV-19/Colombia/TOL-0345-T20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T G2720A C3037T C14408T C20235T A23403G G25563T G26690T

EPI_ISL_526964
 2020-04-14 2020-09-02
 Colombia hCoV-19/Colombia/TOL-0341-T15/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G C24421T G25563T G26690T C29119T

EPI_ISL_526965
 2020-04-14 2020-09-02
 Colombia hCoV-19/Colombia/TOL-0330-T5/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T G26690T

EPI_ISL_527335
 2020-04-14 2020-09-03
 United Kingdom hCoV-19/England/20164002704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241Y A2480R C2558Y C3037T A4572C G6689K G12331R C14408T C15485Y C18508Y C18568Y C21575Y A23403G GGG28881RRS G29868A

EPI_ISL_527336
 2020-04-14 2020-09-03
 United Kingdom hCoV-19/England/20166003004/2020
 ATTAAAGGTTTATACCT1- C241T G2164A C3037T C4832T C6968T C14408T T16242C T17574C A23403G G28703T GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_527719
 2020-04-14 2020-09-04
 United States hCoV-19/USA/MN-CDC-6520/2020
 C241Y T826Y C1059Y C3037Y C14408Y A17858R C18060Y A23403R G25563K T28144Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527721
 2020-04-14 2020-09-04
 United States hCoV-19/USA/MN-CDC-6532/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527722
 2020-04-14 2020-09-04
 United States hCoV-19/USA/MN-CDC-6535/2020
 C241T C3037T C14408T C16830T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527724
 2020-04-14 2020-09-04
 United States hCoV-19/USA/MN-CDC-6538/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29449T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527725
 2020-04-14 2020-09-04
 United States hCoV-19/USA/MN-CDC-6542/2020
 C241T C1059T C3037T A4838G C14408T A23403G G25563T G26262A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528403
 2020-04-14 2020-09-07
 United Kingdom hCoV-19/England/20169038304/2020
 ATTAAAGGTTTATACC1- A2480G C2558T G11083T C14805T G17259T T25519A G26144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_528406
 2020-04-14 2020-09-07
 United Kingdom hCoV-19/England/20176001704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2462A C3037T C14408T C18877T A23403G GGG28881AAC C29144T T29760C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_530066
 2020-04-14 2020-09-10
 Spain hCoV-19/Spain/MD-LP63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16744A A20268G G21190A A23403G T26301G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534764
 2020-04-14 2020-09-14
 United Kingdom hCoV-19/England/OXON-AF504/2020
 C241T C3037T G11801A C14408T T19839C A23403G G25552T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_534765
 2020-04-14 2020-09-14
 United Kingdom hCoV-19/England/OXON-AF980/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC AAA29901-

EPI_ISL_534772
 2020-04-14 2020-09-14
 United Kingdom hCoV-19/England/OXON-B27EA/2020
 ATT1- T9W T11W C241T C3037T G10877A C14408T T18831C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_534777
 2020-04-14 2020-09-14
 United Kingdom hCoV-19/England/OXON-B286F/2020
 C241T A2239G C3037T C12025T C14408T C15324T A23403G G28374A C29171T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_534802
 2020-04-14 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2C63/2020
 C241T T1606C C3037T C14408T G18583T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_534808
 2020-04-14 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2D06/2020
 C241T C3037T C14408T C21233T A23403G C24621T GGG28881AAC

EPI_ISL_534809
 2020-04-14 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2D15/2020
 C241T C3037T G7960T C14408T A23403G G25429T AAAAAAAA29896-

EPI_ISL_534810
 2020-04-14 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2D24/2020
 C241T C3037T C5817T C14408T A23403G A24913G GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_535031
 2020-04-14 2020-09-14
 United Kingdom hCoV-19/England/PORT-2D3471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17410T C18788T T19839C G21830C A23403G C27688T GGG28881AAC G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535032
 2020-04-14 2020-09-14
 United Kingdom hCoV-19/England/PORT-2D349F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17410T C18788T T19839C G21830C A23403G C27688T GGG28881AAC G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535036
 2020-04-14 2020-09-14
 United Kingdom hCoV-19/England/PORT-2D3550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6968T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537514
 2020-04-14 2020-09-16
 United States hCoV-19/USA/CA-UCLA-207/2020
 A1- C37T C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_537585
 2020-04-14 2020-09-16
 United States hCoV-19/USA/CA-UCLA-6/2020
 A1- C241T C379A C1059T C3037T A14041G C14408T C22323T A23403G G25563T GATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29751-

EPI_ISL_537594
 2020-04-14 2020-09-16
 United States hCoV-19/USA/CA-UCLA-7/2020
 A1- C241T C1059T C3037T C4206T C14408T A23403G G25563T C29253T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_538794
 2020-04-14 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A940B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T ATC23397- A23403G G26257R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538798
 2020-04-14 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9A36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538831
 2020-04-14 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A941A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538837
 2020-04-14 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9A63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T A23403G C25452T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538891
 2020-04-14 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A99B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G C25549T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539122
 2020-04-14 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A C7732T A10948G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541149
 2020-04-14 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1253/2020
 C241T TGGTCATGTTATGGT508- AAGTCATTT686- C1059T G2808A C3037T C7609T C14408T A23403G G25563T A26433G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_541780
 2020-04-14 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286EC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17733T A23403G T24460A C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541871
 2020-04-14 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr70/2020
 A1- A2810G C10207T C10376T C15324T T21644C C29303T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_541872
 2020-04-14 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr72/2020
 A1- A2810G C15324T T20526C T21644C C29303T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_542491
 2020-04-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C775T C3037T A14109G T14139C C14408T C15324T A23403G T28066C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_542574
 2020-04-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4931A C6990T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542620
 2020-04-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A15979G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542642
 2020-04-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542643
 2020-04-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A6677G C11518T C11916T C14408T A14463G C18998T A20553G A23403G G25563T C25916T G29540A G29587A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542647
 2020-04-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2331A C3037T C10319T C14408T G20060T C22264T A23403G G24933T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542648
 2020-04-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G9434A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542649
 2020-04-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4931A C6990T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542653
 2020-04-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C23277T A23403G G24314C C24338T G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542665
 2020-04-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C G28460A C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542669
 2020-04-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2388T C3037T A4553G C10188T C11572T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545897
 2020-04-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_545913
 2020-04-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T8082C C8092T C14408T C15342T A23403G C24865T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545922
 2020-04-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T8082C C8092T C14408T C15342T A23403G C24865T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545924
 2020-04-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545929
 2020-04-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G25641T C27964T G28857C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545931
 2020-04-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C20320T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545932
 2020-04-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546280
 2020-04-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A6616G G14118T C14408T G15243T A23403G TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_548249
 2020-04-14 2020-09-25
 Sweden hCoV-19/Sweden/20-50786/2020
 C241T AAGTCATTT686- C1059T C3037T C7600T G13126T C14408T A23403G G24368T G25563T

EPI_ISL_548480
 2020-04-14 2020-09-26
 United States hCoV-19/USA/CA-CZB-3764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1189G C3037T G10793T C14408T C18877T A23403G G25563T C25782T G27514T G28028T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_560630
 2020-04-14 2020-09-29
 France hCoV-19/France/GE8802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G16741T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560991
 2020-04-14 2020-09-30
 Indonesia hCoV-19/Indonesia/EJ-ITD-3601NT/2020
 ATTAAAGGTTTA1- C6312A G11083T C13730T C17397T C19524T C23929T G27163T C28311T

EPI_ISL_565964
 2020-04-14 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T A28680G C29296T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_568936
 2020-04-14 2020-10-02
 France hCoV-19/France/IHU-0689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2189T C3037T G4105T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568939
 2020-04-14 2020-10-02
 France hCoV-19/France/IHU-0694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2106T C2416T G2513A C3037T G8371T C14408T A23403G G25563T G25909T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568940
 2020-04-14 2020-10-02
 France hCoV-19/France/IHU-0697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1648T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568941
 2020-04-14 2020-10-02
 France hCoV-19/France/IHU-0699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G G25563T G29706T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT506892
 2020-04-14 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT506896
 2020-04-14 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT506905
 2020-04-14 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T28723C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT506907
 2020-04-14 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T C21805T A23403G A26183G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810984
 2020-04-14 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0364-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4320T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811021
 2020-04-14 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0434-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16762T A23403G G25563T G25660T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873056
 2020-04-14 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00868/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T C29171T

MT873062
 2020-04-14 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00883/2020
 ATT1- G105T C241T T1370A C3037T A3625T C14408T C18877T A23403G A25405G G25563T C27944T G29474T C29733T

MT873174
 2020-04-14 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00221/2020
 C241T C1059T C1063T C3037T C11916T A12103G C14408T C18998T A23403G G25563T G29540A

MT873339
 2020-04-14 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00869/2020
 ATTAAAGGTT1- C241T C3037T C14408T T17919C C18877T A23403G G25563T GTT27621- G29212T

MT873344
 2020-04-14 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00878/2020
 ATTA1- C241T C2416T C3037T T10216C C14408T G15007A A23403G G25563T G26233T

MT873349
 2020-04-14 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00876/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T

MT873352
 2020-04-14 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00871/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T C29679T

MT873393
 2020-04-14 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00222/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T C26447T

MT873456
 2020-04-14 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00887/2020
 ATTAA1- T194A C241T C313T C3037T G11447A C14408T A23403G G27506T GGG28881AAC

MT873488
 2020-04-14 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00866/2020
 A1- G105T C241T C1812T C3037T C14408T C18877T A23403G G25563T C26606T C27389T

MT873503
 2020-04-14 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00886/2020
 ATTAA1- C241T C1059T C3037T C14408T C16260T C17569T G21718T A23403G C23625T G25563T G27933A C28821A

MT967907
 2020-04-14 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6538/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29449T AAAAAAAAAAAAAAAAAAAAA29883-

MT967972
 2020-04-14 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6520/2020
 C241Y T826Y C1059Y C3037Y C14408Y A17858R C18060Y A23403R G25563K T28144Y AAAAAAAAAAAAAAAAAAAAA29883-

MT967973
 2020-04-14 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6532/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT967974
 2020-04-14 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6535/2020
 C241T C3037T C14408T C16830T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT967976
 2020-04-14 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6542/2020
 C241T C1059T C3037T A4838G C14408T A23403G G25563T G26262A AAAAAAAAAAAAAAAAAAAAA29883-

MW023409
 2020-04-14 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1253/2020
 C241T TGGTCATGTTATGGT508- AAGTCATTT686- C1059T G2808A C3037T C7609T C14408T A23403G G25563T A26433G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

NMDC60013147
 2020-04-14 2020-06-01
 China hCoV-19/Guangzhou/ID183/2020
 C241T C3037T C14408T C15324T C19524T A23403G T29851A G29868M

NMDC60013156
 2020-04-14 2020-06-01
 China hCoV-19/Guangzhou/ID179/2020
 AT1- T10A C241T C3037T C14408T C15324T C19524T G22104T A23403G G25352T G29868A

NMDC60013168
 2020-04-14 2020-06-01
 China hCoV-19/Guangzhou/ID180/2020
 ATTAAAGGTT1- C241T C3037T C14408T C15324T A23403G G29868A

NMDC60013173
 2020-04-14 2020-06-01
 China hCoV-19/Guangzhou/ID178/2020
 C241T C3037T C14408T C15324T A23403G G29868A

NMDC60013187
 2020-04-14 2020-06-01
 China hCoV-19/Guangzhou/ID182/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T TGGTCATGTTATGGT508- C3037T C14408T C15324T A23403G ACAAAC29166- T29867K

EPI_ISL_428847
 2020-04-15 2020-04-22
 Singapore hCoV-19/Singapore/68/2020
 ATT1- C6310A C6312A G11083T C13730T C19524T G23285T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_428848
 2020-04-15 2020-04-22
 Singapore hCoV-19/Singapore/69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGT1- C6310A C6312A G11083T C13730T C16362T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_428849
 2020-04-15 2020-04-22
 Singapore hCoV-19/Singapore/70/2020
 ATTAAAGGTTTA1- C6310A C6312A G11083T C13730T G14973R C19524T C23185Y C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_428850
 2020-04-15 2020-04-22
 Singapore hCoV-19/Singapore/71/2020
 ATTAAAGGTTT1- T154Y C6310A C6312A G11083T C13378T C13730T C19524T C19560T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_430104
 2020-04-15 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII6053S/2020
 C241T C3037T C9565T C14408T A20268G A23403G G28195T T28693G C28887T

EPI_ISL_430105
 2020-04-15 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII6055S/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_430106
 2020-04-15 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII6056S/2020
 C241T C3037T A11474G C14408T A23403G GGG28881AAC

EPI_ISL_430107
 2020-04-15 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII6060S/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_430108
 2020-04-15 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII6061S/2020
 C241T C835T C3037T C14408T A20268G A23403G

EPI_ISL_430109
 2020-04-15 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII6063S/2020
 C241T C3037T C14408T G18686T A23403G G27415T GGG28881AAC

EPI_ISL_430110
 2020-04-15 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII6065S/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_430111
 2020-04-15 2020-04-25
 Russia hCoV-19/Russia/StPetersburg-RII6086S/2020
 C241T C3037T C14408T C18744T A23403G C27046T C27167T GGG28881AAC

EPI_ISL_432762
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/England/SHEF-C3115/2020
 C241T C3037T G7736A C14408T C15324T A23403G

EPI_ISL_433110
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1663/2020
 C241T A2215G C3037T A10874G C12823T C14408T A23403G G25429T G25440A T26677C

EPI_ISL_433112
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1671/2020
 C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_433113
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1674/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T C29160T

EPI_ISL_433114
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1677/2020
 C241T C1059T C1076T C3037T C9598T C10582T C14408T G22309A G22894A A23403G G25563T C26461T

EPI_ISL_433115
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1679/2020
 C241T C3037T C6813T C14408T C14571T A20268G A23403G C28854T

EPI_ISL_433116
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1681/2020
 C241T C3037T C14408T A20268G C23059T A23403G C28854T

EPI_ISL_433118
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1693/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_433119
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1694/2020
 C241T C1059T C1076T C3037T C9598T C10582T C14408T G22309A G22894A A23403G G25563T C26461T

EPI_ISL_433120
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1697/2020
 C241T C3037T T10168C C14408T A20268G A23403G C28854T

EPI_ISL_433122
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1701/2020
 C241T C1059T C1076T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_433123
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1704/2020
 C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_433126
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1711/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_433127
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1717/2020
 C241T C1059T C1076T C3037T T9349C C9598T C10582T C14408T G22309A A23403G G25563T C26461T

EPI_ISL_433129
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1725/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433130
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1730/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_433133
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1740/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_434020
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7C290/2020
 G160T C241T C3037T C13862T C14408T G16741T T17565C A23403G G26529T C28836T

EPI_ISL_434024
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7C2DC/2020
 C241T C3037T C13730T C14408T A21040G A23403G G25429T

EPI_ISL_434046
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7E164/2020
 C241T C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_434054
 2020-04-15 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7E234/2020
 C241T C3037T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_434506
 2020-04-15 2020-04-29
 Luxembourg hCoV-19/Luxembourg/LNS6690193/2020
 C241T C3037T C3634T C14408T C15324T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_434515
 2020-04-15 2020-04-29
 Luxembourg hCoV-19/Luxembourg/LNS5953507/2020
 A187G C241T C3037T C14408T G17014T G20991A C22480T A23403G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_434668
 2020-04-15 2020-04-30
 Sweden hCoV-19/Sweden/20-07389/2020
 C241T C1059T C3037T C14408T C16289T A23403G G24368T G25563T C29272T

EPI_ISL_434669
 2020-04-15 2020-04-30
 Sweden hCoV-19/Sweden/20-07390/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_435039
 2020-04-15 2020-05-01
 United States hCoV-19/USA/LA-EVTL06/2020
 C241T C1059T C3037T T5446C C10319T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_435040
 2020-04-15 2020-05-01
 United States hCoV-19/USA/LA-EVTL07/2020
 C241T T1918C C3037T C3157T C14408T A16534G C18877T C19854T T23269A A23403G C24337T G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_435041
 2020-04-15 2020-05-01
 United States hCoV-19/USA/LA-EVTL08/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_435042
 2020-04-15 2020-05-01
 United States hCoV-19/USA/LA-EVTL09/2020
 C241T C1059T G1980A C3037T C14408T C14583T C16616T C21727T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_435043
 2020-04-15 2020-05-01
 United States hCoV-19/USA/LA-EVTL010/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T G28985A AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_435044
 2020-04-15 2020-05-01
 United States hCoV-19/USA/LA-EVTL011/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_435496
 2020-04-15 2020-05-05
 United States hCoV-19/USA/NY-NYUMC429/2020
 C241T C3037T A6507C A6561G C6701T C14408T C18877T A23403G G25563T

EPI_ISL_435501
 2020-04-15 2020-05-05
 United States hCoV-19/USA/NY-NYUMC434/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C27059T G29540A

EPI_ISL_435505
 2020-04-15 2020-05-05
 United States hCoV-19/USA/NY-NYUMC438/2020
 C241T C3037T A10874G C14408T C18877T A23403G G25563T

EPI_ISL_435506
 2020-04-15 2020-05-05
 United States hCoV-19/USA/NY-NYUMC439/2020
 G124A C241T C1059T C3037T C14408T A23403G C23538T G25563T

EPI_ISL_435507
 2020-04-15 2020-05-05
 United States hCoV-19/USA/NY-NYUMC440/2020
 C241T A1846C C3037T C14408T A23403G A25505C GGG28881AAC

EPI_ISL_435508
 2020-04-15 2020-05-05
 United States hCoV-19/USA/NY-NYUMC441/2020
 C241T C1059T C3037T C14408T C21614T A23403G G25563T

EPI_ISL_435509
 2020-04-15 2020-05-05
 United States hCoV-19/USA/NY-NYUMC442/2020
 C241T C1059T C3037T C14408T G16075T A23403G G25563T C29743T

EPI_ISL_435511
 2020-04-15 2020-05-05
 United States hCoV-19/USA/NY-NYUMC444/2020
 C241T C3037T C10335T C14408T C18877T A23403G G25563T

EPI_ISL_435512
 2020-04-15 2020-05-05
 United States hCoV-19/USA/NY-NYUMC445/2020
 C241T C1059T C3037T C14408T A23403G C24863T G25563T A28359G G29825T

EPI_ISL_435514
 2020-04-15 2020-05-05
 United States hCoV-19/USA/NY-NYUMC447/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27208T

EPI_ISL_435529
 2020-04-15 2020-05-05
 United States hCoV-19/USA/NY-NYUMC464/2020
 C241T C1059T C3037T C14408T A23403G T23672C G25563T

EPI_ISL_436601 MT706415
 2020-04-15 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3653T C13487T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436604 MT706418
 2020-04-15 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3692T A4838G C6445T C7420T C14937T C20148T C25916T C26907G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436926 MT444624
 2020-04-15 2020-05-07
 United States SARS-CoV-2/human/USA/UT-02228/2020
 AT1- C241T C2939T C3037T C14408T C15857T A23403G G24197T G28882T

EPI_ISL_437337
 2020-04-15 2020-05-08
 Democratic Republic of the Congo hCoV-19/DRC/2496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4158T C11572T C14408T C15324T G16846T A23403G C28355G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_437338
 2020-04-15 2020-05-08
 Democratic Republic of the Congo hCoV-19/DRC/2529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11083T C14408T C15324T A23403G A23942T C29555T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_437339
 2020-04-15 2020-05-08
 Democratic Republic of the Congo hCoV-19/DRC/2536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3608A C9924T G11083T C14408T C15324T A23403G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_437340
 2020-04-15 2020-05-08
 Democratic Republic of the Congo hCoV-19/DRC/2563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C835T C2453T C3037T C7765T C9344T C14408T C17690T C18877T C18928T G20438T A23403G G25563T C26527T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_437343
 2020-04-15 2020-05-08
 Democratic Republic of the Congo hCoV-19/DRC/2670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C835T C2453T A2653G C3037T C7765T C9344T C14408T C17690T C18877T G20438T A23403G G25563T C26527T G29645T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_437383
 2020-04-15 2020-05-08
 United States hCoV-19/USA/MN-MDH-621/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T A4838G C14408T A23403G G25563T G26262A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437404 MT450890
 2020-04-15 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T T5728C C14408T A23403G G25563T C29870A

EPI_ISL_437405 MT450891
 2020-04-15 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C14408T C21575T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_437406 MT450892
 2020-04-15 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G20991T A23403G G25563T C25585T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_437407 MT450893
 2020-04-15 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0191/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T G20991T A23403G G25563T C25585T

EPI_ISL_437433
 2020-04-15 2020-05-08
 United States hCoV-19/USA/MT-BHDH-074/2020
 C8782T C17747T A17858G C18060T A24694T T28144C G28899T TCACCGAGGCCACGCGGAG29729-

EPI_ISL_437774 MT482121
 2020-04-15 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0135/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T C16575T A23403G G25563T G29449T

EPI_ISL_437794 MT482141
 2020-04-15 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C4577T C14408T C15371T A23403G G25563T

EPI_ISL_438153
 2020-04-15 2020-05-12
 United States hCoV-19/USA/WA-S600/2020
 C241T C813A C1059T C3037T C12488T C14408T A23403G G25563T A29551G

EPI_ISL_438156
 2020-04-15 2020-05-12
 United States hCoV-19/USA/WA-S603/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_438206
 2020-04-15 2020-05-12
 United States hCoV-19/USA/WA-S653/2020
 C241T C1059T G1264T C3037T C14408T A23403G G25563T

EPI_ISL_438550
 2020-04-15 2020-05-12
 United Kingdom hCoV-19/England/CAMB-80F83/2020
 C241T C3037T A5656G C14408T A23403G GGG28881AAC

EPI_ISL_438551
 2020-04-15 2020-05-12
 United Kingdom hCoV-19/England/CAMB-80FB0/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_438920
 2020-04-15 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C3037T C14408T C16289T A23403G T25222C G25429T C26060T C27167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438921
 2020-04-15 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C3037T A6264G C10798A T11075C C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439827
 2020-04-15 2020-05-12
 United Kingdom hCoV-19/England/LIVE-99EE4/2020
 C241T C3037T C14408T C15237T C16323T A23403G GGG28881AAC

EPI_ISL_441465
 2020-04-15 2020-05-12
 United Kingdom hCoV-19/England/NOTT-110084/2020
 C241T C3037T C14408T C22530T A23403G

EPI_ISL_443247
 2020-04-15 2020-05-12
 Singapore hCoV-19/Singapore/155/2020
 C6310A C6312A C7735T G11083T C12484T C13730T C19524T A19667G C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_444198
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D508C/2020
 C241T C3037T C14408T A19543C C19610T A23403G GGG28881AAC

EPI_ISL_444199
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D509B/2020
 C241T C3037T T7435C G10097A T13216G C14408T G20014T A23403G C23731T GGG28881AAC

EPI_ISL_444201
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D50E6/2020
 C241T C3037T A11537G C14408T A23403G

EPI_ISL_444202
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D50F5/2020
 C241T C3037T C9979T C14408T A23403G G28321A GGG28881AAC

EPI_ISL_444204
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D52A4/2020
 C241T C3037T A11537G C14408T A23403G

EPI_ISL_444205
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D52B3/2020
 C241T G472T C1059T C3037T C14408T C21381T A23403G G24368T G25563T

EPI_ISL_444206
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D52C2/2020
 C241T C3037T C4002T G10097A C13536T C14408T G17938A A23403G C23731T GGG28881AAC C28957T

EPI_ISL_444207
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D52E0/2020
 C241T G2164A C3037T C14408T C15216T A23403G C27999T GGG28881AAC C29296T

EPI_ISL_444208
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D52FF/2020
 C241T C3037T C4543T C12747T C14408T C14877T A23403G GGG28881AAC C29679T

EPI_ISL_444213
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5365/2020
 C241T C3037T C8074T C14408T C20133T A23403G GGG28881AAC

EPI_ISL_444214
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5383/2020
 C241T C3037T C14408T A23403G

EPI_ISL_444215
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D53A1/2020
 A7479G A8667G G11083T C14805T T17247C C25572T A25636G G26144T C28887T

EPI_ISL_444216
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D53CF/2020
 C241T G621A C3037T C14408T A23403G GGG28881AAC T29148C

EPI_ISL_444217
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D53DE/2020
 C241T G472T C1059T C3037T C14408T C21381T A23403G G24368T G25563T

EPI_ISL_444218
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5417/2020
 C241T C313T G1681A C3037T C3140T G7846A G9203A C14408T G14829T A23403G GGG28881AAC

EPI_ISL_444219
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5426/2020
 C241T AAGTCATTT686- C3037T G8602A C14408T A23403G C25782T G28739T

EPI_ISL_444220
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5435/2020
 C241T C3037T C4002T G10097A C13517T C13536T C14408T T18260C C21302T A23403G C23731T GGG28881AAC C29675T

EPI_ISL_444221
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5444/2020
 C241T C3037T G7798T C12789T C14408T A20268G A23403G

EPI_ISL_444222
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5453/2020
 C241T G472T C1059T C3037T C14408T C21381T A23403G G24368T G25563T

EPI_ISL_444223
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5471/2020
 C241T C2704T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444224
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5480/2020
 C241T C3037T C14408T C20759T A23403G GGG28881AAC T28978A

EPI_ISL_444225
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D549F/2020
 C241T C3037T C14408T C20759T A23403G GGG28881AAC T28978A

EPI_ISL_444226
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/LOND-D54AE/2020
 C241T C3037T T11457C C14408T A23403G G25009A C25350T

EPI_ISL_444286
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/BIRM-5E319/2020
 C241T C3037T C14408T C22713T A23403G GGG28881AAC

EPI_ISL_444400
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7FC9F/2020
 C241T C3037T C14408T G16206T C21058T A23403G GGG28881AAC

EPI_ISL_444449
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80F38/2020
 C241T C3037T C6070T C14408T G20709T A23403G G23426A C23896T GGG28881AAC

EPI_ISL_444450
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80F47/2020
 C241T C635T C3037T C3828T C14408T A23403G C25350T

EPI_ISL_444451
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80F56/2020
 C241T T2158C C3037T C14408T C16289T C18348T C19484T A23403G G25429T

EPI_ISL_444453
 2020-04-15 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80F74/2020
 C241T C3037T C6636T G6884A C14408T A23403G GGG28881AAC

EPI_ISL_447340
 2020-04-15 2020-05-17
 Israel hCoV-19/Israel/2113678/2020
 C241T C1059T C2644T C3037T C4893T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447341
 2020-04-15 2020-05-17
 Israel hCoV-19/Israel/2113603/2020
 C241T C3037T C14408T A18825G C18877T A23403G G24000T G25563T AAAAAAAAAAAA29892-

EPI_ISL_447342
 2020-04-15 2020-05-17
 Israel hCoV-19/Israel/2113601/2020
 C241T C1059T C2110T C3037T C14408T A20755C A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447345
 2020-04-15 2020-05-17
 Israel hCoV-19/Israel/2113178/2020
 C241T C2416T C3037T C7764T C14408T A23403G G25563T G26758T AAAAAAAAAAAA29892-

EPI_ISL_447346
 2020-04-15 2020-05-17
 Israel hCoV-19/Israel/2113174/2020
 C241T C313T C3037T G4510A C14408T A23403G G25785T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447347
 2020-04-15 2020-05-17
 Israel hCoV-19/Israel/2113173/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26758T AAAAAAAAAAAA29892-

EPI_ISL_447348
 2020-04-15 2020-05-17
 Israel hCoV-19/Israel/2113161/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G24867C G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_447349
 2020-04-15 2020-05-17
 Israel hCoV-19/Israel/2113155/2020
 C241T C1059T C3037T C11916T G14268A C14408T C18998T A23403G G25563T T26593C G29540A AAAAAAAAAAAA29892-

EPI_ISL_447465
 2020-04-15 2020-05-17
 Israel hCoV-19/Israel/130710157/2020
 C241T C313T AAGTCATTT686- C3037T C3874T G4510A G6373T C14408T A23403G T27384C G27459T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_447467
 2020-04-15 2020-05-17
 Israel hCoV-19/Israel/130710097/2020
 C3037T C14408T A23403G AAAAAAAAAAAA29892-

EPI_ISL_447859
 2020-04-15 2020-05-18
 India hCoV-19/India/CCMB_K771/2020
 ATTAAAGGT1- G1458T G1820A A1846T GC6309AA C6312A G11083T C13730T C19524T C23929T C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_448239
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8833/2020
 ATTAAAGGT1- C241T A1964C C3037T C14408T C16694Y A23403G C25728T GGG28881AAC

EPI_ISL_448245
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/NORW-E88BB/2020
 A1- C241T C3037T G3567A C14408T A23403G GGG28881AAC

EPI_ISL_448268
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8A5B/2020
 ATTAA1- C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_448273
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8AA6/2020
 C241T C3037T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_448277
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8AE2/2020
 ATTA1- C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_448281
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8B3A/2020
 ATT1- C241T C3037T C14408T A23403G C25728T C27737T GGG28881AAC

EPI_ISL_448295
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8C82/2020
 ATTAAAGGTTTATAC1- C241T C3037T T11121G C14408T A23403G GGG28881AAC

EPI_ISL_448299
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8CCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A10892R C13862T C14408T T19330C A23403G C28836T

EPI_ISL_448304
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8D16/2020
 ATTAAAGGTT1- C241T C3037T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_448828
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/SHEF-C0F96/2020
 C241T C3037T G12514T C14408T C16101T A18616G A23403G C28256T GGG28881AAC G29779C

EPI_ISL_448834
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/SHEF-C1C70/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_448902
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/SHEF-D0300/2020
 C241T C1387T C3037T C14408T A23403G A27545G GGG28881AAC

EPI_ISL_448908
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/SHEF-D0FB1/2020
 C241T C1469T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448913
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/SHEF-D2720/2020
 C241T C3037T T9124C C14408T C16101T A18616G G23311T A23403G GGG28881AAC

EPI_ISL_449224
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T T14646C C18395T A23403G C25528T G27715T GGG28881AAC G29260K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449225
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5012A C14408T T17126C A20268G A23403G G24197A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449226
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7020G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449669
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4C6B/2020
 C241T C3037T A8681G C9438T C10369T C14408T A23403G GGG28881AAC

EPI_ISL_449670
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4C7A/2020
 C241T C313T C3037T C14408T C20544T A23403G T27618C GGG28881AAC

EPI_ISL_449671
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4C89/2020
 C241T A2476G C3037T C14408T A23403G TTTAGCACTCAA27568- GGG28881AAC

EPI_ISL_449672
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4C98/2020
 C241T C3037T T9642C C14408T C16289T A23403G G25429T

EPI_ISL_449673
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4CA7/2020
 C241T C3037T C5173T C14408T G19132A A23403G GGG28881AAC

EPI_ISL_449674
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4CB6/2020
 C241T C3037T C14408T A20268G C23127T A23403G C28854T

EPI_ISL_449675
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4CC5/2020
 C241T A2476G C3037T C14408T A23403G TTTAGCACTCAA27568- GGG28881AAC

EPI_ISL_449676
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4CD4/2020
 C241T C3037T C14408T A23403G

EPI_ISL_449678
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4CF2/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_449680
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D514D/2020
 C241T G2164A C3037T C4780T A10479G G11842T C14408T A23403G GGG28881AAC

EPI_ISL_449681
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D515C/2020
 C241T C3037T A6442G A10948G C14408T A23403G C27542T C27920T GGG28881AAC

EPI_ISL_449682
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D516B/2020
 C241T C3037T T8356G C14408T A23403G GGG28881AAC

EPI_ISL_449683
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D5189/2020
 C241T G472T C1059T C3037T C14408T C21381T A23403G G24368T G25563T C25889T

EPI_ISL_449685
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D51C5/2020
 C241T C913T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_449686
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D51D4/2020
 C241T C1059T C1437T C3037T T13006C C14408T A23403G G25563T C25688T A25864G

EPI_ISL_449687
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D51E3/2020
 C241T C3037T T11457C C14408T T17126C A23403G C25350T

EPI_ISL_449689
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D520E/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_449690
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D521D/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_449691
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D522C/2020
 C241T C3037T C3817T T14133C C14408T A23403G GGG28881AAC

EPI_ISL_449694
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D5268/2020
 C241T C3037T C9979T C14408T A23403G GGG28881AAC

EPI_ISL_449696
 2020-04-15 2020-05-19
 United Kingdom hCoV-19/England/LOND-D5286/2020
 C241T C313T C3037T C11572T G12565T C14408T A23403G A25965C GGG28881AAC

EPI_ISL_449959 MT641605
 2020-04-15 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S789/2020
 G1401A C8782T C17747T A17858G C18060T A19308G T28144C

EPI_ISL_449960 MT641562
 2020-04-15 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S790/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_449962 MT641538
 2020-04-15 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S792/2020
 G1401A C8782T T13438C C17747T A17858G C18060T C24096T T28118C T28144C

EPI_ISL_449963 MT641582
 2020-04-15 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S793/2020
 G1401A C8782T T13438C C17747T A17858G C18060T T28118C T28144C

EPI_ISL_449966 MT641486
 2020-04-15 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S796/2020
 C241T C1059T C3037T C14408T A15426G C18029T C18115T G18859T C19029T A23403G G25563T T29410C G29553A

EPI_ISL_449974 MT641619
 2020-04-15 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S804/2020
 G1401A C2675T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_449977 MT641613
 2020-04-15 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S807/2020
 C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T

EPI_ISL_449978 MT641560
 2020-04-15 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S808/2020
 G1401A C8782T T13438C T16863C C17747T A17858G C18060T T28144C

EPI_ISL_449979 MT641528
 2020-04-15 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S809/2020
 C241T C1059T C3037T C13443T C14408T A23403G G25563T G29553A

EPI_ISL_449980 MT641633
 2020-04-15 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S810/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_449982 MT641549
 2020-04-15 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S812/2020
 G1401A C8782T T13438C C17747T A17858G C18060T T28144C

EPI_ISL_449983 MT641510
 2020-04-15 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S813/2020
 C8782T G15406A C17010T C17747T A17858G C18060T T28144C A28761G

EPI_ISL_449989 MT641521
 2020-04-15 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S819/2020
 C241T T833C C1059T C3037T C14408T C17163T C23248T A23403G G25563T C27964T

EPI_ISL_450241
 2020-04-15 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII6251S/2020
 C241T C3037T C14408T A23403G G27415T GGG28881AAC

EPI_ISL_450244
 2020-04-15 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII6840S/2020
 C241T C3037T C14408T A22155G A23403G C26750T GGG28881AAC

EPI_ISL_450245
 2020-04-15 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII6846V/2020
 C241T C3037T C14408T A22155G A23403G C26750T GGG28881AAC

EPI_ISL_450702 MT506887
 2020-04-15 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450703
 2020-04-15 2020-05-22
 United States hCoV-19/USA/IL-UW-349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C15868T T18736C A22922C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450712
 2020-04-15 2020-05-22
 United States hCoV-19/USA/IL-UW-358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2003T C3037T C9924T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450719
 2020-04-15 2020-05-22
 United States hCoV-19/USA/IL-UW-365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C A2550G C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_452056
 2020-04-15 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-193/2020
 C241T C1059T C3037T G10465A C14408T C21742T A23403G T23491G G25563T G28899T

EPI_ISL_452057
 2020-04-15 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-194/2020
 C241T C1059T C3037T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_452058
 2020-04-15 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-195/2020
 C241T C3037T C14408T A23403G

EPI_ISL_452212
 2020-04-15 2020-05-27
 India hCoV-19/India/NIV-9768/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C14408T A23403G T23952G GGG28881AAC A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452235
 2020-04-15 2020-05-27
 Sweden hCoV-19/Sweden/20-07295/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_452813 MT558664
 2020-04-15 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G C24034T G25563T C29870A

EPI_ISL_453106
 2020-04-15 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB4024/2020
 C241T C3037T C14408T A23403G

EPI_ISL_453107
 2020-04-15 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB4027/2020
 C241T C3037T C10798A C13862T C14408T C14925T A23403G C28836T

EPI_ISL_454577
 2020-04-15 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/17920/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454723 MT536971
 2020-04-15 2020-05-28
 United States SARS-CoV-2/Human/USA/UT-01997/2020
 C241T C2939T C3037T C14408T A23403G G29868A

EPI_ISL_455101
 2020-04-15 2020-05-29
 Sweden hCoV-19/Sweden/20-07377/2020
 C241T C1059T G1440A C1722T C3037T C14408T A23403G G24368T G25563T A27976T

EPI_ISL_456100
 2020-04-15 2020-06-01
 Brazil hCoV-19/Brazil/RJ-2033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456101
 2020-04-15 2020-06-01
 Brazil hCoV-19/Brazil/RJ-2044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C C29743T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456377
 2020-04-15 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2108/2020
 G11083T C14805T C23707T G26144T C27059T

EPI_ISL_456378
 2020-04-15 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2109/2020
 G11083T C14805T C23707T G26144T C27059T

EPI_ISL_456379
 2020-04-15 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2475/2020
 C241T C3037T C3373A C11195T C14408T G19109T A23403G GGG28881AAC

EPI_ISL_456380
 2020-04-15 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2485/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_456381
 2020-04-15 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2495/2020
 C241T C3037T A6252G C14408T A23403G GGG28881AAC

EPI_ISL_456382
 2020-04-15 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2522/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A

EPI_ISL_456383
 2020-04-15 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2539/2020
 C241T C1059T A2439G C3037T C14408T A23403G G25563T C26625T

EPI_ISL_456384
 2020-04-15 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2541/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_456385
 2020-04-15 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2554/2020
 C241T C3037T C14408T C19325T A20268G A23403G C23422T

EPI_ISL_456386
 2020-04-15 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2556/2020
 C241T A1953G C2416T C3037T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_457053
 2020-04-15 2020-06-02
 United Kingdom hCoV-19/England/EXET-1353CC/2020
 C241T C3037T C6903T A13456G C14408T C16952T A23403G GGG28881AAC

EPI_ISL_457057
 2020-04-15 2020-06-02
 United Kingdom hCoV-19/England/EXET-135405/2020
 C241T C678T C3037T C14408T G18859T G21624T A23403G GGG28881AAC

EPI_ISL_457061
 2020-04-15 2020-06-02
 United Kingdom hCoV-19/England/EXET-135450/2020
 C241T C3037T C6903T A13456G C14408T C16952T A23403G GGG28881AAC

EPI_ISL_457106
 2020-04-15 2020-06-02
 United Kingdom hCoV-19/England/EXET-135845/2020
 C241T C1059T C3037T C9870T C14408T C16750T A23403G G25563T A25806G G29705T

EPI_ISL_457108
 2020-04-15 2020-06-02
 United Kingdom hCoV-19/England/EXET-135863/2020
 C241T G1408A C3037T A4638G C14408T C17326T A23403G G24077T

EPI_ISL_457109
 2020-04-15 2020-06-02
 United Kingdom hCoV-19/England/EXET-135872/2020
 ATG1605- C11497T C17898T C23758T T28867C C29095T

EPI_ISL_457111
 2020-04-15 2020-06-02
 United Kingdom hCoV-19/England/EXET-1358AF/2020
 C241T C3037T A9634T C14408T A23403G GGG28881AAC C29686T

EPI_ISL_457112
 2020-04-15 2020-06-02
 United Kingdom hCoV-19/England/EXET-1358BE/2020
 C241T C3037T C14408T A20092G A23403G G24077T T28630G

EPI_ISL_457198
 2020-04-15 2020-06-02
 United Kingdom hCoV-19/England/EXET-1360F1/2020
 C241T C3037T C5005T C10156T C14408T A23403G GGG28881AAC

EPI_ISL_457203
 2020-04-15 2020-06-02
 United Kingdom hCoV-19/England/EXET-136158/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457204
 2020-04-15 2020-06-02
 United Kingdom hCoV-19/England/EXET-136167/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC C29642T

EPI_ISL_457206
 2020-04-15 2020-06-02
 United Kingdom hCoV-19/England/EXET-136194/2020
 C241T C3037T C5005T C13536T C14408T A23403G GGG28881AAC C29555T

EPI_ISL_457624
 2020-04-15 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C7EDE/2020
 ATG1605- A1904G C8090T C10789T A12796C C28609T C28657T

EPI_ISL_457921
 2020-04-15 2020-06-02
 Kenya hCoV-19/Kenya/P703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458067
 2020-04-15 2020-06-03
 India hCoV-19/India/CCMB_O2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C6312A G11083T C13730T C23929T G25445T CC28311TT AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458075
 2020-04-15 2020-06-03
 India hCoV-19/India/CCMB_O2_P1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A T10321C G11083T C13730T C23929T G25445T CC28311TT CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_458143
 2020-04-15 2020-06-03
 Brazil hCoV-19/Brazil/AP164082-IEC/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_458144
 2020-04-15 2020-06-03
 Brazil hCoV-19/Brazil/AP163972-IEC/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_458246
 2020-04-15 2020-06-04
 United States hCoV-19/USA/CA-SR0362/2020
 C222T C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_458251
 2020-04-15 2020-06-04
 United States hCoV-19/USA/CA-SR0368/2020
 C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_458511
 2020-04-15 2020-06-04
 United Kingdom hCoV-19/England/BRIS-12A2EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174T C241T C3037T C14408T C17249T G17722T A23403G GGG28881AAC G29279K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460618 MT560530
 2020-04-15 2020-06-04
 Turkey SARS-CoV-2/human/TUR/IMU-SP-01/2020
 ATTAAAGGTTT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_460639
 2020-04-15 2020-06-06
 Netherlands hCoV-19/Netherlands/Flevoland_6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T G9802T G9805T C14408T T16203C A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460640
 2020-04-15 2020-06-06
 Netherlands hCoV-19/Netherlands/Flevoland_7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8643C C10681T C14408T G15438T A20268G C21575T A23403G G25785T A27403T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460758
 2020-04-15 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G T26187C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460819
 2020-04-15 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G C25482T G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460823
 2020-04-15 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G C25482T G25563T G26101T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460936
 2020-04-15 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G5425T C11109T G12769T C14408T G16917T A23403G G25563T T28813C C29370T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461172
 2020-04-15 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3947T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462276
 2020-04-15 2020-06-08
 Singapore hCoV-19/Singapore/158/2020
 T1293Y C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAAAAAA29888-

EPI_ISL_463367 MT642428
 2020-04-15 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S877/2020
 ATTAAAGGTTTAT1- C36T C6285T C8208T C8782T C12525T C17747T A17858G C18060T T28144C C29733T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463998
 2020-04-15 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0082/2020
 C241T C1059T C3037T C6500T C14408T A23403G G25563T G28368A

EPI_ISL_464058
 2020-04-15 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0086/2020
 C241T C1059T C3037T G11083T C11308T C14408T A23403G G25217T G25563T

EPI_ISL_465225
 2020-04-15 2020-06-11
 United Kingdom hCoV-19/England/20169030304/2020
 C241T C3037T C14408T T22312G A23403G G26450T GGG28881AAC

EPI_ISL_465280
 2020-04-15 2020-06-11
 United Kingdom hCoV-19/England/20170033804/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_466460
 2020-04-15 2020-06-11
 United Kingdom hCoV-19/England/20164065904/2020
 C241T C3037T C14408T A23403G C28846Y GGG28881AAC

EPI_ISL_466485
 2020-04-15 2020-06-11
 United Kingdom hCoV-19/England/20164082704/2020
 T13C C241T C313T C3037T C4456T C14408T A23403G G28086T GGG28881AAC AA29882RR A29892G AA29899GG

EPI_ISL_466493
 2020-04-15 2020-06-11
 United Kingdom hCoV-19/England/20166000204/2020
 A2480G C2558T C5467T C14805T G19117T G21800T G25440K G26144T A29871W

EPI_ISL_466496
 2020-04-15 2020-06-11
 United Kingdom hCoV-19/England/20166000704/2020
 C241T C3037T C8078Y C14408T A23403G G27703R C28728Y GGG28881AAC A29881T

EPI_ISL_466498
 2020-04-15 2020-06-11
 United Kingdom hCoV-19/England/20166000904/2020
 A2480G C2558T C5467T G11083T C14805T G19117T G21800T G26144T

EPI_ISL_466511
 2020-04-15 2020-06-11
 United Kingdom hCoV-19/England/20166006104/2020
 A187G C241T C3037T A5650G C14408T C14741T A23403G

EPI_ISL_466533
 2020-04-15 2020-06-11
 United Kingdom hCoV-19/England/20166013104/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC A29871C

EPI_ISL_466537
 2020-04-15 2020-06-11
 United Kingdom hCoV-19/England/20166015304/2020
 C241T C3037T T3808Y C4655T C7321T A11957G C14408T A15483R C17285T C19488T A23403G GGG28881AAC

EPI_ISL_466538
 2020-04-15 2020-06-11
 United Kingdom hCoV-19/England/20166015404/2020
 C241T C3037T C7321T A11957G C14408T C17285T C19488T A23403G GGG28881AAC

EPI_ISL_466570
 2020-04-15 2020-06-11
 United Kingdom hCoV-19/England/20166068204/2020
 C241T C3037T T9519Y C14408T T21021C A23403G GGG28881AAC C29284T

EPI_ISL_466588
 2020-04-15 2020-06-11
 United Kingdom hCoV-19/England/20168000604/2020
 C241T C2445T C3037T C14408T C20031A A20112W A23403G C27046T GGG28881AAC

EPI_ISL_468318
 2020-04-15 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-505/2020
 C241T C3037T C9438Y G11521T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_468966
 2020-04-15 2020-06-17
 Spain hCoV-19/Spain/Palma2591/2020
 C241T G285A C3037T C10993Y C11379Y C14408T A23403G

EPI_ISL_469296
 2020-04-15 2020-06-18
 Japan hCoV-19/Japan/Donner38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C11752T C25665T C26447T C27610T TTA27698- T28912C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469615
 2020-04-15 2020-06-18
 United Kingdom hCoV-19/England/BRIS-128274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G26730K G28580T C28687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469738
 2020-04-15 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127A9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A C2523T G2891A G3239T C16658T G28851T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469775
 2020-04-15 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1281FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3619T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470877 MT786455
 2020-04-15 2020-06-19
 Georgia SARS-CoV-2/human/GEO/Tb-3118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C398T GTTATG515- C1059T C2147T C3037T C14408T G17679T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

EPI_ISL_471189
 2020-04-15 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G509A C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471231
 2020-04-15 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C26353T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471645
 2020-04-15 2020-06-22
 India hCoV-19/India/CCMB_O2_P4M/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6312A T10321C G11083T C13730T C23929T G25445T CC28311TT CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_471646
 2020-04-15 2020-06-22
 India hCoV-19/India/CCMB_O2_P4S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6312A T10321C G11083T C13730T C23929T G25445T CC28311TT CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_472410
 2020-04-15 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111E01/2020
 C4540T C8782T T9477A C14805T C25714T G25979T C26029A T28144C C28657T C28863T

EPI_ISL_473513
 2020-04-15 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2537/2020
 C241T C3037T C6195T C14408T A20268G A23403G G29734C

EPI_ISL_473514
 2020-04-15 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2550/2020
 C241T C2842T C3037T G10097A T13216G C13629T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_473515
 2020-04-15 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2556/2020
 C241T C3037T C8344T C14408T A23403G G25429T

EPI_ISL_473791
 2020-04-15 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4039/2020
 C241T C3037T A3881G C14408T A23403G C25350T

EPI_ISL_473792
 2020-04-15 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4041/2020
 C241T C3037T A3881G C14408T A23403G C25350T

EPI_ISL_473793
 2020-04-15 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4043/2020
 C241T C3037T G6461T C12915T C14408T A20268G A23403G G27987T C28775T C28854T

EPI_ISL_473794
 2020-04-15 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4044/2020
 ATG1605- C3787T A7958G G11944T C16362T G29734C C29784T

EPI_ISL_474343
 2020-04-15 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-32700/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_474397
 2020-04-15 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-32B04/2020
 A1- C241T C3037T C14408T A23403G C23997T C28369T C28512T GGG28881AAC

EPI_ISL_475540
 2020-04-15 2020-06-23
 Sweden hCoV-19/Sweden/20-07382/2020
 C241T G1421A C3037T C14408T G23288A A23403G GGG28881AAC

EPI_ISL_475915
 2020-04-15 2020-06-25
 Austria hCoV-19/Austria/CeMM0565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C17750T C20941T T22447Y A23403G G25563T C29284T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476830
 2020-04-15 2020-06-26
 Benin hCoV-19/Benin/1950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A361G T2339W C4296G T4463Y C8782T T17990K A20597R G22468T T25807Y T28144C G28878A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_476831
 2020-04-15 2020-06-26
 Benin hCoV-19/Benin/2012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A361G G1141T C8782T G22468T T28144C G28878A G29742A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_477947
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3411T C3885T A5353G C14408T C17104T A20268G A23403G C28253T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477949
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2196C G11083T C14805T C17172A T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477951
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4054C C10798A C12733T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477952
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19636A A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477955
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T C19955T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477956
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6636T C12880T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477957
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477960
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C14408T A23403G C26111T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477961
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21304A A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477962
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21304A A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477964
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T T21644C C26447T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477965
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477975
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26542T C27046T G28300T GGG28881AAC G28914T C29642T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477987
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G23868T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477988
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9808T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478276
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/EXET-135890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10188T C14408T A23403G C25350T T28199-

EPI_ISL_478768
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF759/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_478771
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF7B3/2020
 ATT1- C241T C3037T C14408T T18398C A23403G G24781T C27434T GGG28881AAC C29870A

EPI_ISL_478773
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF7D1/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_478774
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF7FF/2020
 C241T C3037T G7675T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_478775
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF81A/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_478776
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF838/2020
 C241T C1059T C3037T T7302C C7764T C14408T G22141A A23403G G25563T C28932T C29067T

EPI_ISL_478777
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF856/2020
 C241T C1059T C3037T T7302C C7764T C14408T G22141A A23403G G25563T C28932T C29067T

EPI_ISL_478779
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAG1- C241T C3037T T10825W C14408T C16289T A23403G G25429T T28688C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_478783
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF8DE/2020
 C241T C1912T C2110T C3037T C6606T G10997A C14408T G14580T A20139G A23403G C27213T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_478786
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF935/2020
 C241T C593T C3037T C14408T C16260T T19839C A23403G C26681T GGG28881AAC

EPI_ISL_478787
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF953/2020
 ATTAAAGGTTTATACCTTCC1- T224W C241T C3037T C14408T G21724T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_478790
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF9BD/2020
 ATTAAA1- C241T C3037T C14408T A23403G G24781T G28739T GGG28881AAC

EPI_ISL_478795
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFA14/2020
 A1515G T7783C C9223T G11083T C14805T T17247C G26144T A29895R AAAAA29899-

EPI_ISL_478797
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFA32/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_478808
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFB5D/2020
 G11083T C14805T T17247C G26144T A29903-

EPI_ISL_478812
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFBD5/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_478813
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFC1E/2020
 C241T C3037T A4571G C6968T C14408T A23403G GGG28881AAC AAAAA29899-

EPI_ISL_478918
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-B08E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1572T C2695T C3037T G10097A C10369T C14408T C17733T A23403G C23731T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_479051
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-B18D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C3037T C14408T T18831C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_479058
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-B199A/2020
 C241T C3037T C4021T C14408T T19808C A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_479061
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-B19F4/2020
 C241T C1572T C2695T C3037T G10097A C10369T C14408T C17733T A23403G C23731T A28870T GGG28881AAC

EPI_ISL_479101
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1EF5/2020
 C44T C241T C3037T A10948G C14408T A23403G C27542T GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_479103
 2020-04-15 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1F98/2020
 C241T C1912T C3037T C14408T G14580T G18674A A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_479493
 2020-04-15 2020-06-30
 India hCoV-19/India/NIV-10176/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T G22988A A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479596
 2020-04-15 2020-06-30
 Singapore hCoV-19/Singapore/518/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_479597
 2020-04-15 2020-06-30
 Singapore hCoV-19/Singapore/519/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26922Y AAAAAAAAAAAA29892-

EPI_ISL_479598
 2020-04-15 2020-06-30
 Singapore hCoV-19/Singapore/520/2020
 C1427T C6310A C6312A A9634T G11083T C13730T A19511R C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_479600
 2020-04-15 2020-06-30
 Singapore hCoV-19/Singapore/522/2020
 C6310A C6312A G11083T C13730T C19524T C23393Y C23929T C24463Y C28311T AAAAAAAAAAAA29892-

EPI_ISL_479601
 2020-04-15 2020-06-30
 Singapore hCoV-19/Singapore/523/2020
 T267Y C6310A C6312A G11083T C13730T C19524T C23185T C23929T T26729C C28311T T29729C AAAAAAAAAAAA29892-

EPI_ISL_479768
 2020-04-15 2020-07-01
 United States hCoV-19/USA/FL-Miami-06_UMTL-A6U1/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C673T G1580A C3037T T4125C C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_479769
 2020-04-15 2020-07-01
 United States hCoV-19/USA/FL-Miami-06_UMTL-A6U2/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C673T G1580A C3037T T4125C C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_479770
 2020-04-15 2020-07-01
 United States hCoV-19/USA/FL-Miami-06_UMTL-A6U4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C673T AATACCATAATGAATCTGGCTTGAAAACCATTCTT1422- G1580A C3037T T4125C TTATATGCCTTATTTCTTTACTTTATTGCTACAATTGTGTACTTTTACTAGAAGTACAAATTC6766- A13057T CTGTATTATCTTTCTGTGCTTTTGCTGTAGATGCTGCT13059- C14408T A23403G CCACAGAAATTCTACCAGTGTCTATGACCAAGACATCAGTAGATTGTACAATGTACATTTGTGGTGATTCAACTGAATGCAGCAATCTTTTGTTGCAATATGGCAGTTTTTGTACACAATTAAACCGTGCTTTAACTGGAATAGCTGTTGAACAAGACAAAAACACCCAAGAAGTTTTTGCACAAGTCAAACAAATTTACAAAACACCACCAATTAAAGATTTTGGTGGTTTTAATTTTTCACAAATATTACCAGATCCATCAAAACCAAGCAAGAGGTC23730- CATCCTTACTGCGCTTCGATTGT26340- -26593T C26607AAG T26609C C26611A TGG26613CAA GTCTTCT26620A TT26631CA GCCTATGCC26634- GA26648CC T26651G TTTTTGTAT26655- T26665A G26672C TTCCTCTGGCTGTTATGGCCAGTAACTTTAGCTTGTTTTGTGCTTGCTGCTGTTTACAGAATAAATTGGATCACCGGTGGAATTGCTATCGCAATGGCTTGTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTTTCAGACTGTTTGCGCGTACGCGTTCCATGTGGTCATTCAATCCAGAAACTAA26679- GGG28881AAC AT29844CA T29847C AA29849CC A29852G CT29854GC TTAGGA29858- G29864A A29866G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_479771
 2020-04-15 2020-07-01
 United States hCoV-19/USA/FL-Miami-06_UMTL-A6U6/2020
 ATTA1- C241T C2997T C3037T C14408T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_479772
 2020-04-15 2020-07-01
 United States hCoV-19/USA/FL-Miami-06_UMTL-A6U7/2020
 AT1- AGGTTTATACCTTC6- C20T C241T C673T G1580A C3037T T4125C C14408T A23403G GGG28881AAC A29882G AAAAAAAAAA29894-

EPI_ISL_480401 MT772568
 2020-04-15 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480858 MT704025
 2020-04-15 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481555
 2020-04-15 2020-07-03
 Finland hCoV-19/Finland/15A32S5/2020
 C241T C620T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481556
 2020-04-15 2020-07-03
 Finland hCoV-19/Finland/15A36S5/2020
 C241T C3037T C14408T G19086T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481557
 2020-04-15 2020-07-03
 Finland hCoV-19/Finland/15A41S5/2020
 C241T C1059T C3037T A6139G C14408T C22987T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481558
 2020-04-15 2020-07-03
 Finland hCoV-19/Finland/15A50S5/2020
 C241T C1059T C3037T C14408T C19884T C20078T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481559
 2020-04-15 2020-07-03
 Finland hCoV-19/Finland/15A602/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481560
 2020-04-15 2020-07-03
 Finland hCoV-19/Finland/15A628/2020
 C241T C1059T C3037T A4911G T9508C C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481561
 2020-04-15 2020-07-03
 Finland hCoV-19/Finland/15A84S16/2020
 C241T C3037T C6401T C11572T C14408T A19974G A23403G G24932T C27689T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481562
 2020-04-15 2020-07-03
 Finland hCoV-19/Finland/15A92S5/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481563
 2020-04-15 2020-07-03
 Finland hCoV-19/Finland/15A93S5/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481564
 2020-04-15 2020-07-03
 Finland hCoV-19/Finland/15A99S16/2020
 C241T C1059T T3016C C3037T C9565T A11983G C14408T A19838C A23403G G24368T G24959T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_483162
 2020-04-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0472-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_483163
 2020-04-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0473-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_483164
 2020-04-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0474-SAN/2020
 ATTAA1- C241T C3037T C12854T C14408T A20268G A23403G C28854T

EPI_ISL_483185
 2020-04-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0501-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C2594T C3037T C4582T C11102T C14408T A20268G A23403G

EPI_ISL_483186
 2020-04-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0502-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1096G C3037T C14408T G14874T C18877T A23403G G25563T

EPI_ISL_483238
 2020-04-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0582-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1135T C3037T C4754T C14408T A20268G A23403G C28854T

EPI_ISL_483239
 2020-04-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0583-SAN/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C28253T

EPI_ISL_483240
 2020-04-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0584-SAN/2020
 ATTAA1- C241T A1096G C3037T C14408T G14874T C18877T A23403G G25563T

EPI_ISL_483241
 2020-04-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0585-SAN/2020
 ATTA1- C241T C3037T C9430T C14408T G18972T G19969A A20268G A23403G C26124T C28854T

EPI_ISL_483244
 2020-04-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0588-IPL/2020
 ATTA1- C241T C1059T A2647G G2809T C3037T C14408T T17687C A23403G G25563T C25886T

EPI_ISL_483247
 2020-04-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0593-SAN/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A23403G T26960C GGG28881AAC

EPI_ISL_483248
 2020-04-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0597-IPL/2020
 ATTA1- C241T C1911T C3037T C7043T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483250
 2020-04-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0602-IPL/2020
 ATTA1- C241T C1911T C3037T C7043T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483344
 2020-04-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0765-IPL/2020
 ATTAAAGGTTTATACC1- C241T C2594T C3037T C4582T C11102T C14408T A20268G A23403G

EPI_ISL_483353
 2020-04-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0781-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C6813T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_483596
 2020-04-15 2020-07-08
 Singapore hCoV-19/Singapore/573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACT1- C6310A C6312A C6903M C9474Y G11083T C13730T C19524T C20956Y C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483681
 2020-04-15 2020-07-08
 Switzerland hCoV-19/Switzerland/G2_838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15324T C18796T G19342S T19344Y C19448Y C19502M A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_484591
 2020-04-15 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G28980T T29685G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484592
 2020-04-15 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C11916T C14408T C14925T G16068T A23403G A25575C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484593
 2020-04-15 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T C27577T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484595
 2020-04-15 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G9479T G11083T C14408T A23403G G25563T C27881T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484599
 2020-04-15 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4300T C10798A C11074T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484601
 2020-04-15 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G C26270T G26272T C28708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484606
 2020-04-15 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16338T A23403G T26921C C27046T G28817T GGG28881AAC CCACGCGGAGTACGAT29738- G29778A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484614
 2020-04-15 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484616
 2020-04-15 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203Y C8782T G14638R C17470T C26088T C26456T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484619
 2020-04-15 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14599T C16289T C17249T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485186
 2020-04-15 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C2334T C3037T C14408T T21763G A23403G G23915A G25563T C27509T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485191
 2020-04-15 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485193
 2020-04-15 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8950T C14408T C17444A A22994G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485194
 2020-04-15 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C2334T C3037T C14408T A23403G G23915A G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485195
 2020-04-15 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C2334T C3037T C3717T C14408T A23403G G23915A G25563T C27964T C29730A G29766T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485198
 2020-04-15 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17019T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485199
 2020-04-15 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C14408T A23403G G25563T C27964T C29353T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485890
 2020-04-15 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTCATGTTA510- C1059T A2647G C3037T C6633T C11020T C14408T G17808T A23403G G25563T C27964T G28300T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_485952
 2020-04-15 2020-07-10
 United States hCoV-19/USA/UN-UW-2814/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T G3231T C8782T C17747T A17858G C18060T A20097G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485953
 2020-04-15 2020-07-10
 United States hCoV-19/USA/UN-UW-2820/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TH G3231T C8782T C17747T A17858G C18060T A20097G C27684T T28144C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_485954
 2020-04-15 2020-07-10
 United States hCoV-19/USA/UN-UW-2832/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T G3231T C8782T C17747T A17858G C18060T A20097G TTA20423- T28144C C29095T A29881C AAAAAAAAAAAAAA29890-

EPI_ISL_485956
 2020-04-15 2020-07-10
 United States hCoV-19/USA/UN-UW-2837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- T2597C G3231T G5666A C8782T C17747T A17858G C18060T C18248T A20097G T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_485958
 2020-04-15 2020-07-10
 United States hCoV-19/USA/UN-UW-2849/2020
 ATTAAAGGTTTAT1- G3231T C8782T C17747T A17858G C18060T A20097G T28144C C28833T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485960
 2020-04-15 2020-07-10
 United States hCoV-19/USA/UN-UW-2854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G3231T C8782T C17747T A17858G C18060T A20097G T28144C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_485961
 2020-04-15 2020-07-10
 United States hCoV-19/USA/UN-UW-2855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- G3231T C8782T C17747T A17858G C18060T A20097G T28144C G28712A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_485963
 2020-04-15 2020-07-10
 United States hCoV-19/USA/UN-UW-2859/2020
 ATTAAAGGTTTAT1- A14T CCCAGGTAACAAACCAA19- CC36TA C2037T G3231T C8782T C17747T A17858G C18060T A20097G T28144C C28833T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_485964
 2020-04-15 2020-07-10
 United States hCoV-19/USA/UN-UW-2863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- G3231T C8782T C17747T A17858G C18060T A20097G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_485967
 2020-04-15 2020-07-10
 United States hCoV-19/USA/UN-UW-2874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G3231T C8782T C17747T A17858G C18060T A20097G T28144C AAAAAAAAA29895-

EPI_ISL_485968
 2020-04-15 2020-07-10
 United States hCoV-19/USA/UN-UW-2890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACT1- C241T C1059T C1437T C3037T C6040T C11036T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_485969
 2020-04-15 2020-07-10
 United States hCoV-19/USA/UN-UW-2897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_485973
 2020-04-15 2020-07-10
 United States hCoV-19/USA/WA-UW-1768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- AAC34HTT C222T C4456T A6693G T8601C C8782T C14877T C17747T A17858G C18060T T27228A TTG27775CGA T28144C A29188T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_486025
 2020-04-15 2020-07-10
 United States hCoV-19/USA/WA-UW-2743/2020
 ATTAAAGGTTTATA1- TCCC18GGGA C241T C1059T C3037T T8883C TT8885AA AGG13512TTA C14408T C15048T A23403G G25563T G29553A

EPI_ISL_486026
 2020-04-15 2020-07-10
 United States hCoV-19/USA/WA-UW-2744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- AAC34HTT C241T C1059T C3037T C14408T A23403G G25563T A27253G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_486027
 2020-04-15 2020-07-10
 United States hCoV-19/USA/WA-UW-2747/2020
 ATTAAAGGTTTATACCTT1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_486029
 2020-04-15 2020-07-10
 United States hCoV-19/USA/WA-UW-2761/2020
 AT1- C36T C241T C1059T C3037T C14408T T23374C A23403G G25563T C29445T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_486036
 2020-04-15 2020-07-10
 United States hCoV-19/USA/WA-UW-2795/2020
 ATTAAAGGTTTATACCTTCCCAG1- AAC34TTT C241T C1059T C3037T C11020T C14408T G20134T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_486121
 2020-04-15 2020-07-10
 United States hCoV-19/USA/CA-CZB-1790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T4711C A6709G C14408T A14771G C18570T A23122V A23403G T25902W T25908W G25913S GGG28881AAC

EPI_ISL_486220
 2020-04-15 2020-07-10
 United States hCoV-19/USA/CA-CZB-1931/2020
 AT1- C241T A2254R C3037T T4711C A6709G C14408T C18570T A23122R A23403G T25902W GGG28881AAC

EPI_ISL_486221 MT750412
 2020-04-15 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1932/2020
 AT1- C241T C2842T C3037T T4711C A6709G C14408T C18570T G20060K A23403G GGG28881AAC

EPI_ISL_487672
 2020-04-15 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323R C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487711
 2020-04-15 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13717A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487836
 2020-04-15 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G A25065T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487864
 2020-04-15 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C10790Y C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487902
 2020-04-15 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14790T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489197
 2020-04-15 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103BDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489205
 2020-04-15 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9967T A10323G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489333
 2020-04-15 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-104584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23114T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489769 MT757029
 2020-04-15 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0360/2020
 ATTA1- T490A C3177T C5052T C6040T C8782T G12478A G15906T A18102G T18736C G21718A C24034T T26729C G28077C T28144C C28896G A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_489770 MT757030
 2020-04-15 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0361/2020
 ATTAAAGG1- T490A C3177T C6040T C8782T C10594T G12478A T18736C G21718A C24034T T26729C T27941G G28077C T28144C C28896G A29700G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_489772 MT757032
 2020-04-15 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0363/2020
 A1- T490A C3177T C6040T C8782T G12478A T18736C G21718A C24034T T26729C T27941G G28077C T28144C C28896G A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_489773 MT757033
 2020-04-15 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0364/2020
 ATTA1- T490A C3177T C6040T C8782T C10594T G12478A T18736C G21718A C24034T T26729C T27941G G28077C T28144C C28896G A29700G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_490565
 2020-04-15 2020-07-15
 United Kingdom hCoV-19/England/NOTT-1126CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G TTTACTCTCCAA27680- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490566
 2020-04-15 2020-07-15
 United Kingdom hCoV-19/England/NOTT-1126DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491137
 2020-04-15 2020-07-16
 Oman hCoV-19/Oman/20631/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25C C241T C3037T G10265A C14408T C16293T G17064T C18395T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491158
 2020-04-15 2020-07-16
 Oman hCoV-19/Oman/20616/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C2836T C3037T C14408T C16726T C18877T C22444T A23403G G25563T C26735T C28854T G29513T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491167
 2020-04-15 2020-07-16
 Oman hCoV-19/Oman/20099/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T G10265A C14408T C16293T G17302T A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_492032
 2020-04-15 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_1019/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1514T C3037T C14408T A23403G C25613T T27299C GGG28881AAC T29148C T29848A A29850C AG29852TA GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_492240
 2020-04-15 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18538FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492318
 2020-04-15 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18538B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1148T C3037T C14408T A23403G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492361
 2020-04-15 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18538CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9561T C14408T C19170T G19509A A23403G ATGTTT23484- C23525T GGG28881AAC C29640Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492919
 2020-04-15 2020-07-20
 United Kingdom hCoV-19/England/NORT-28ACEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492938
 2020-04-15 2020-07-20
 United Kingdom hCoV-19/England/NORT-28ADAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13862T C14408T C17795Y T21033C A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492942
 2020-04-15 2020-07-20
 United Kingdom hCoV-19/England/NORT-28AD8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T A23403G T27805C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492946
 2020-04-15 2020-07-20
 United Kingdom hCoV-19/England/NORT-28ACF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492962
 2020-04-15 2020-07-20
 United Kingdom hCoV-19/England/NORT-28AD14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9491T C14408T C21575T A21717T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492965
 2020-04-15 2020-07-20
 United Kingdom hCoV-19/England/NORT-28AD23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6422A C14408T A23403G G25157R T28118C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492966
 2020-04-15 2020-07-20
 United Kingdom hCoV-19/England/NORT-28AD50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C C7764T G10097A A11728G C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492970
 2020-04-15 2020-07-20
 United Kingdom hCoV-19/England/NORT-28AD05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- -11075TTT G11083T C14805T G21624T G22104T G26144T G27225C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495581
 2020-04-15 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S001102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C22879T A23403G G25563T C25886T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495600
 2020-04-15 2020-07-23
 United States hCoV-19/USA/MN-MDH-1301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C8127T C8782T C17747T A17858G C18060T A24694T T28144C G28812T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_499083
 2020-04-15 2020-07-28
 Argentina hCoV-19/Argentina/PAIS-G0001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C2061T C3037T C9711T C14408T C17012T A20268G CG21304AA A23403G G26152T C27304T G29703T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_501616
 2020-04-15 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260F18A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2895C C3037T C3373A C3923A C11195T G11287T T14399Y C14408T A23403G G24757T G25555K GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507040
 2020-04-15 2020-08-03
 United Kingdom hCoV-19/England/LOND-124CD1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T12304C C14408T C18788T T19839C A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_507936
 2020-04-15 2020-08-03
 United States hCoV-19/USA/MN-MDH-1347/2020
 ATTA1- C8782T G14350T A17858G C18060T A24694T T28144C G28812T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509090
 2020-04-15 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G T25729C AAA29901-

EPI_ISL_509091
 2020-04-15 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T C19862T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_510947
 2020-04-15 2020-08-07
 Portugal hCoV-19/Portugal/PT0688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6701T T7054C C14408T A23403G A25998G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_510948
 2020-04-15 2020-08-07
 Portugal hCoV-19/Portugal/PT0689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3653T C14408T C21242T GCTTTA22289- A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512909
 2020-04-15 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH317/2020
 C241T C3037T C14408T C18877T C22006T A23403G G25563T C26735T

EPI_ISL_512913
 2020-04-15 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH324/2020
 C241T T2803C C3037T C6402T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512918
 2020-04-15 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH456/2020
 C241T C3037T C9430T C14408T C18877T T20452C A23403G G25563T C26735T

EPI_ISL_512919
 2020-04-15 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH457/2020
 C241T C3037T C9430T C14408T C18877T T20452C A23403G G25563T C26735T

EPI_ISL_512928
 2020-04-15 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH479/2020
 C8782T A17858G T28144C

EPI_ISL_514432
 2020-04-15 2020-08-17
 Italy hCoV-19/Italy/CEINGE-Naples5/2020
 ATTA1- C241T C3037T C3927T C4993T C14408T A20268G C22458T A23403G

EPI_ISL_514751 MT890669
 2020-04-15 2020-08-17
 Italy SARS-CoV-2/human/ITA/Beneventum-S66/2020
 ATTA1- C241T C3037T C3927T C4993T C14408T A20268G C22458T A23403G

EPI_ISL_515374
 2020-04-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0098/2020
 ATTA1- C241T C379A C1059T C3037T T4597C C14408T C14925T A23403G G25563T

EPI_ISL_515375
 2020-04-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0099/2020
 ATTAAA1- C241T A798G C1059T C3037T C13119T C14408T A23403G C24990T G25563T

EPI_ISL_515557
 2020-04-15 2020-08-19
 Brazil hCoV-19/Brazil/SP-615/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C20480T A23403G T27299C GGG28881AAC T29148C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_517529
 2020-04-15 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D363F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C593T C3037T A13689G C14408T C16260T T19839C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517532
 2020-04-15 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D3699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6916C C14408T C17410T C18788T T19839C G21830C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517535
 2020-04-15 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D36C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6916C C14408T C17410T C18788T T19839C G21830C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517536
 2020-04-15 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D36D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17410T C18788T T19839C G21830C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517537
 2020-04-15 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D373C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24620T G27204T GGG28881AAC C29420T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517540
 2020-04-15 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D3778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C26681T T28618C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_520735
 2020-04-15 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920667218/2020
 G216T C3099A C8782T T28144C G28878A G29140C G29742A

EPI_ISL_520736
 2020-04-15 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920667894/2020
 C241T C3037T C14408T T19839C A23403G A24010G GGG28881AAC C29733T

EPI_ISL_522671 MT973313
 2020-04-15 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C4540T A4624G C8782T T9477A C14805T G25979T G26062T T28144C C28311T C28657T C28863T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_523506
 2020-04-15 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523958
 2020-04-15 2020-08-27
 Brazil hCoV-19/Brazil/SP-162/2020
 ATTAAAGGTTTATACCTT1- A22G C241T C3037T C9733T C12053T C14408T G16072T A23403G G25088T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_524048
 2020-04-15 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-6425V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C14408T A23403G T23633C A24855G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524787
 2020-04-15 2020-08-28
 Brazil hCoV-19/Brazil/PA-IEC-163469/2020
 C241T C3037T A6319G C14408T A23403G G25088T T26149C GGG28881AAC

EPI_ISL_525684
 2020-04-15 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-50113-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C10851T C14408T C15237T C17550T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526217
 2020-04-15 2020-09-01
 Hungary hCoV-19/Hungary/MH-732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3686T T10567C C14408T A23403G G26314A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526229
 2020-04-15 2020-09-01
 Hungary hCoV-19/Hungary/MH-722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3426T C3686T T10567C C14408T A23403G G25074T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526234
 2020-04-15 2020-09-01
 Hungary hCoV-19/Hungary/MH-726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3426T C3686T T10567C C14408T A23403G G25074T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526464
 2020-04-15 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB1702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C27688T C28854T G29543C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526465
 2020-04-15 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB1729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T G29543C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526469
 2020-04-15 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB1785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T G29543C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526476
 2020-04-15 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB4060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4683T C10798A C13862T C14408T C15720T A23403G G24821T G28460T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527403
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-C0363-2/2020
 C241T C1059T C3037T C14408T C19983T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527406
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-C0881-2/2020
 C241T C1059T C3037T C14408T C19983T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527407
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-C1255/2020
 C241T C1059T C3037T C14408T C19983T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527412
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-D0204/2020
 C241T C1059T C3037T C14408T T19393Y C22564T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527413
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-D0259/2020
 C241T C1059T C2455T C3037T G8602A G11984T C14408T C16733T C17678T A23403G T25468G G25563T T29612C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527418
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-D0459-3/2020
 C241T C1059T C3037T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527419
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-D0590-1/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527422
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-D0769-2/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527429
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1057-2/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527432
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1060-2/2020
 C241T C1059T A1422C G1584K C3037T G3530K T3837C C8782T G10160K A10329M C13554Y C14408T T15343Y T16849C C23121Y A23403G G23958K T25468G G25563T G26263K C29149Y G29468K AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527435
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1075-2/2020
 C241T C1059T C3037T G8602A C8820M C14408T T19389W C19402M A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527438
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1085-3/2020
 C241T C1059T C3037T T5469G G8602A T10216G A10219T C10232G G10262T C14408T A23403G T25058G T25468G G25563T T26307C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527440
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1490-2/2020
 C241T C1059T C3037T G8602A A13852G C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527444
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1657-3/2020
 C241T T318Y C346Y C1059T C3037T T3541Y C3828A G8602A C14408T C14889T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527462
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2282-3/2020
 C241T C1059T C2558T C3037T G6077T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527463
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2373-1/2020
 C241T C1059T C3037T G7016T G8602R A10542M C12525T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527470
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2598-1/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527476
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-D3084-2/2020
 C241T C1059T C3037T C3611M C14408T A23403G T24581Y T25468G G25563T C26455T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527484
 2020-04-15 2020-09-02
 United States hCoV-19/USA/CO-CSU-E0983-2/2020
 C241T C1059T C3037T C14408T G19414T G20616T A23403G A24129G G25552T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527726
 2020-04-15 2020-09-04
 United States hCoV-19/USA/MN-CDC-6543/2020
 C241T C1059T C3037T A4838G C14408T A23403G G25563T G26262A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527727
 2020-04-15 2020-09-04
 United States hCoV-19/USA/MN-CDC-6546/2020
 C241T C539T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528398
 2020-04-15 2020-09-07
 United Kingdom hCoV-19/England/20166007904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2164A C3037T C6968T C14408T T16242C A23403G G28703T GGG28881AAC AAAAAAAA29896-

EPI_ISL_528430
 2020-04-15 2020-09-07
 United Kingdom hCoV-19/England/20164077504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2164A C3037T C4832T C6968T T16242C T17574C A23403G G28703T GGG28881RRS AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_530067
 2020-04-15 2020-09-10
 Spain hCoV-19/Spain/MD-LP64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C29754T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530238
 2020-04-15 2020-09-11
 Australia hCoV-19/Australia/QLD964/2020/P1
 AT1- C241T C3037T C6538T G12223T C14408T A20268G T22942C A23403G

EPI_ISL_530277
 2020-04-15 2020-09-11
 Australia hCoV-19/Australia/QLD1017/2020/P1
 ATTAAA1- C241T C1059T C3037T C7817T C14408T A23403G G25563T

EPI_ISL_534779
 2020-04-15 2020-09-14
 United Kingdom hCoV-19/England/OXON-B28BA/2020
 C241T C3037T C6723T C14408T A23403G G25785T GGG28881AAC AAAAAAAAA29895-

EPI_ISL_535038
 2020-04-15 2020-09-14
 United Kingdom hCoV-19/England/PORT-2D35D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22592T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537515
 2020-04-15 2020-09-16
 United States hCoV-19/USA/CA-UCLA-208/2020
 ATT1- C241T C1059T C3037T C14408T G18907T A23403G G25563T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_540437 MW023393
 2020-04-15 2020-09-21
 United States SARS-CoV-2/human/USA/WI-CDC-8099/2020
 C241T C3037T C14408T T15354C C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_541759
 2020-04-15 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286C54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G C9223T G11083T C11173T G11745A C14805T T17247C A19010G G19388A G26144T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542602
 2020-04-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-1237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T G11083T C14408T C22477T A23403G G24368T G25563T C28093T C29253T G29315T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542607
 2020-04-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-1244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10681T C14408T A23403G G25563T C27964T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542622
 2020-04-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-1272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542625
 2020-04-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-1278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1738T C3037T C11653T C14408T C21575T C22716T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542629
 2020-04-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-1282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T G27952T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542630
 2020-04-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-1286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5693T G6309T C10188T C14408T T20811C A23403G T24982C G25563T C27964T C28657T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542651
 2020-04-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-1319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17808T C21721T A23403G G25563T C25714T T27384C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542780
 2020-04-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-1539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18055A G19525T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542902
 2020-04-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-1919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G10325A C14408T T15336C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542906
 2020-04-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-1928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545893
 2020-04-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T3700A C6031T C14408T A23403G G25563T C25777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545898
 2020-04-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3784T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545899
 2020-04-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545900
 2020-04-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T9853C C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545905
 2020-04-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18055A G19525T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545926
 2020-04-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C19263T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545927
 2020-04-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546288
 2020-04-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G15243T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_546295
 2020-04-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1684T C3037T G4631A C6310T G11083K C14408T G18898T A23403G A25315G C25413T G26122A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_546315
 2020-04-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G18055A G19525T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_546324
 2020-04-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C4931A C14408T C23191T A23403G G25563T AA29902-

EPI_ISL_546334
 2020-04-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T7075Y C14408T C16915T C17474T C18788T A23403G G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_546352
 2020-04-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_546495
 2020-04-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A15596G C18877T A23403G G25563T AAAAAAA29897-

EPI_ISL_547521
 2020-04-15 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T22229C A23403G A24862G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548244
 2020-04-15 2020-09-25
 United States hCoV-19/USA/NY-ISMMS-MH001832N/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C1059T C1392T C3037T G3251T C14408T A23403G G25563T C26625T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_565884
 2020-04-15 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T G14829T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_568561
 2020-04-15 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C8016T C14408T T18685A A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_568924
 2020-04-15 2020-10-02
 France hCoV-19/France/IHU-0672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568925
 2020-04-15 2020-10-02
 France hCoV-19/France/IHU-0673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568926
 2020-04-15 2020-10-02
 France hCoV-19/France/IHU-0674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568927
 2020-04-15 2020-10-02
 France hCoV-19/France/IHU-0675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T A11707G C14408T C16289T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568928
 2020-04-15 2020-10-02
 France hCoV-19/France/IHU-0676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C8892T C11758T C14408T C16887T A23403G C27046T G28580C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568929
 2020-04-15 2020-10-02
 France hCoV-19/France/IHU-0677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G G25767T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568930
 2020-04-15 2020-10-02
 France hCoV-19/France/IHU-0678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C12081T C13458T C14408T C14931T G17893T C20946T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568931
 2020-04-15 2020-10-02
 France hCoV-19/France/IHU-0680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15277T C15324T A23403G G29751C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568932
 2020-04-15 2020-10-02
 France hCoV-19/France/IHU-0681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1420T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT506888
 2020-04-15 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C8782T C15868T T18736C A22922C C24034T T26729C C27635T G28077C T28144C A29567C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT506897
 2020-04-15 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2003T C3037T C9924T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT506904
 2020-04-15 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C A2550G C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT627745
 2020-04-15 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S600/2020
 ATTAAA1- C241T C813A C1059T C3037T C12488T C14408T A23403G G25563T A29551G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT627923
 2020-04-15 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S603/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628070
 2020-04-15 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S653/2020
 ATTAAAGGTTT1- C241T C1059T G1264T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT810585
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0472-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810586
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0473-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810587
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0474-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C12854T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810936
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0216-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T C14408T C15857T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810983
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0362-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810988
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0368-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811203
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0501-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2594T C3037T C4582T C11102T C14408T A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811204
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0502-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1096G C3037T C14408T G14874T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811254
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0582-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1135T C3037T C4754T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811255
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0583-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C28253T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811256
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0584-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1096G C3037T C14408T G14874T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811257
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0585-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C9430T C14408T G18972T G19969A A20268G A23403G C26124T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811259
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0588-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2647G G2809T C3037T C14408T T17687C A23403G G25563T C25886T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811261
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0593-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G T26960C GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811262
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0597-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1911T C3037T C7043T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811264
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0602-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1911T C3037T C7043T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811356
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0765-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2594T C3037T C4582T C11102T C14408T A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811365
 2020-04-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0781-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C6813T G11083T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873093
 2020-04-15 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00225/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873147
 2020-04-15 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00227/2020
 C241T C2416T C3037T C14408T A23403G T23452C G25563T G26233T

MT873296
 2020-04-15 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00228/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873302
 2020-04-15 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00230/2020
 ATTAAA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

MT873446
 2020-04-15 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00229/2020
 C241T C2416T C3037T C14408T C21412A A23403G G25563T G26233T

MT956913
 2020-04-15 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-72021243/2020
 C8782T T9477A C14805T T28144C C28657T C28863T

MT967977
 2020-04-15 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6543/2020
 C241T C1059T C3037T A4838G C14408T A23403G G25563T G26262A AAAAAAAAAAAAAAAAAAAAA29883-

MT967978
 2020-04-15 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6546/2020
 C241T C539T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW001240
 2020-04-15 2020-09-14
 United States SARS-CoV-2/human/USA/213-ETA/2020
 C241T C1059T C3037T G7975A C14408T C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAA29883-

NMDC60013149
 2020-04-15 2020-06-01
 China hCoV-19/Guangzhou/ID193/2020
 ATTAAAGG1- C241T C3037T C14408T C15324T C19524T A23403G G29868A

NMDC60013152
 2020-04-15 2020-06-01
 China hCoV-19/Guangzhou/ID187/2020
 C241T C3037T C14408T C15324T C19524T A23403G

NMDC60013157
 2020-04-15 2020-06-01
 China hCoV-19/Guangzhou/ID164/2020
 C241T C3037T C14408T C15324T C15654T A23403G G29868A

NMDC60013159
 2020-04-15 2020-06-01
 China hCoV-19/Guangzhou/ID188/2020
 ATTA1- A5T C241T C3037T C12342T C14408T C15324T A23403G C24213T G29868M

NMDC60013165
 2020-04-15 2020-06-01
 China hCoV-19/Guangzhou/ID197/2020
 A4- C241T C3037T C14408T C15324T A23403G G29868A

NMDC60013184
 2020-04-15 2020-06-01
 China hCoV-19/Guangzhou/ID190/2020
 ATTAAAGGTTTATACCTTCCC1- C241T G2231T G2382T C3037T TG11539- A11822G C14408T C15324T A23403G G29868C

NMDC60013185
 2020-04-15 2020-06-01
 China hCoV-19/Guangzhou/ID165/2020
 AT1-G C241T C3037T A10323G C14408T C15324T A23403G G29868A

NMDC60013192
 2020-04-15 2020-06-01
 China hCoV-19/Guangzhou/ID198/2020
 C241T C3037T C14408T C15324T A23403G G29868R

NMDC60013197
 2020-04-15 2020-06-01
 China hCoV-19/Guangzhou/ID199/2020
 ATTA1- C241T C3037T G3566A T12436A C14408T C15324T A23403G C29034T T29851A

EPI_ISL_429846
 2020-04-16 2020-04-24
 United States hCoV-19/USA/WI-GMF-01158/2020
 C241T A739G C1059T C2933T C3037T C9866T C12400T C14408T A14747G A20755C A23403G G25563T

EPI_ISL_429847
 2020-04-16 2020-04-24
 United States hCoV-19/USA/WI-GMF-01159/2020
 C241T A739G C1059T C2933T C3037T C9866T C12400T C14408T A14747G A20755C A23403G G25563T

EPI_ISL_433117
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1683/2020
 C241T C1101T C3037T C14408T A23403G A25798G GGG28881AAC

EPI_ISL_433121
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1700/2020
 C241T G2883A C3037T C3619T C14408T A20268G A23403G G28395A G29734C

EPI_ISL_433125
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1707/2020
 C241T C3037T C14408T C18348T A20268G A23403G C28854T

EPI_ISL_433132
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1738/2020
 C241T G2883A C3037T C3619T C14408T A20268G A23403G G29734C

EPI_ISL_433135
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1811/2020
 C241T C3037T C4551T T5161A C14408T T17126C A20268G A23403G G29742T

EPI_ISL_433136
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1812/2020
 C241T C3037T A10874G C14408T A23403G G25429T T26677C

EPI_ISL_433137
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1813/2020
 C241T C3037T A3911G C14408T A23403G C26028T

EPI_ISL_433139
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1816/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_433140
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1817/2020
 C241T C3037T G8936A C14408T C16289T A23403G G25429T G29747T

EPI_ISL_433141
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1819/2020
 C241T C3037T C14408T C18788T T19839C A23403G A24862G GGG28881AAC

EPI_ISL_433142
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1820/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433143
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1821/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_433145
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1825/2020
 C241T A2215G C3037T A10874G C12823T C14408T A23403G G25429T G25440A T26677C

EPI_ISL_433147
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1827/2020
 C241T C3037T C6633T C14408T A20268G A23403G C28854T

EPI_ISL_433148
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1828/2020
 C241T C3037T T5977C C14408T A20268G A23403G C28854T

EPI_ISL_433149
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1829/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433150
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1830/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_433472
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7E331/2020
 C241T C3037T C6558T C14408T A23403G G25429T

EPI_ISL_433487
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FBB0/2020
 C241T C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_433489
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FBDE/2020
 C241T C2062T C3037T C14408T A23403G C25350T

EPI_ISL_433490
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FBFC/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_433491
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FC08/2020
 C241T C3037T G11222T C14408T T18083C A23403G GGG28881AAC

EPI_ISL_433492
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FC17/2020
 C241T C3037T C12076T C14408T C19488T A23403G GGG28881AAC G29701T

EPI_ISL_433493
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FC26/2020
 C241T A2991G C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_433494
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FC35/2020
 C241T C3037T C14408T T19839C A23403G C26681T T27680G GGG28881AAC

EPI_ISL_433495
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FC44/2020
 C241T C3037T G11222T C14408T T18083C C19884T A23403G GGG28881AAC

EPI_ISL_433496
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FC53/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_433497
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FC62/2020
 A2480G C2558T C3040T G11083T C14805T G26144T

EPI_ISL_434041
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7E119/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_434045
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7E155/2020
 C241T C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_434047
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7E1BF/2020
 C241T C3037T C12076T C14408T A23403G GGG28881AAC G29701T

EPI_ISL_434049
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7E1DD/2020
 C241T C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_434051
 2020-04-16 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7E1FB/2020
 A187G C241T C3037T C14408T A23403G

EPI_ISL_434671
 2020-04-16 2020-04-30
 Sweden hCoV-19/Sweden/20-07440/2020
 C241T C1059T C3037T G3896T A4457G C7165T C14408T A23403G G24368T G25563T

EPI_ISL_434672
 2020-04-16 2020-04-30
 Sweden hCoV-19/Sweden/20-07459/2020
 C241T C3037T C5007T C14408T A23403G GGG28881AAC

EPI_ISL_434673
 2020-04-16 2020-04-30
 Sweden hCoV-19/Sweden/20-07480/2020
 C241T C3037T C14408T G19542T A23403G GGG28881AAC

EPI_ISL_435494
 2020-04-16 2020-05-05
 United States hCoV-19/USA/NY-NYUMC427/2020
 C241T C1059T C3037T A3845G C11752T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_435530
 2020-04-16 2020-05-05
 United States hCoV-19/USA/NY-NYUMC465/2020
 C241T C1059T G1470T C3037T C14408T C17304T A23403G G25563T C25710T T27428C

EPI_ISL_435531
 2020-04-16 2020-05-05
 United States hCoV-19/USA/NY-NYUMC466/2020
 C241T C1059T C3037T C14408T C21304A A23403G G25563T

EPI_ISL_435533
 2020-04-16 2020-05-05
 United States hCoV-19/USA/NY-NYUMC468/2020
 C241T C1059T C3037T C4795T C14408T G15418T A23403G G25563T G29402T

EPI_ISL_435535
 2020-04-16 2020-05-05
 United States hCoV-19/USA/NY-NYUMC470/2020
 C241T C1059T C3037T A7678C C9924T C11916T C14408T C18998T G22205C A23403G G25563T G29540A

EPI_ISL_435688
 2020-04-16 2020-05-05
 Singapore hCoV-19/Singapore/83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C6310A C6312A C6990Y G11083T C13730T C19524T C23929T G25599T C28311T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_435722
 2020-04-16 2020-05-05
 United States hCoV-19/USA/NY-NYUMC463/2020
 T13C C241T C1059T C3037T C6385T C11916T C14408T C18998T A20272G A23403G G25563T TT26159- G29540A

EPI_ISL_436458
 2020-04-16 2020-05-06
 India hCoV-19/India/NCDC-4867/2020
 G2081K T2087Y C2091Y C2094Y C3037T T5151C C10074Y G11649R G11807K G12352K C14408Y A15435R A23403R C28311Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436462
 2020-04-16 2020-05-06
 India hCoV-19/India/NCDC-4878/2020
 C241T C3037T T8022K G12355K C14408T G14974K A15435R T18764Y T22515Y A23403G AG24389MS AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_436602 MT706416
 2020-04-16 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T809A C1059T C3037T C14408T C16017T C16616T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436603 MT706417
 2020-04-16 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5622T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436607 MT706421
 2020-04-16 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T809A C1059T C3037T G3955T C14408T C16017T C16616T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436608 MT706422
 2020-04-16 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A4838G C7420T C14937T C20148T G25907T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437348
 2020-04-16 2020-05-08
 Democratic Republic of the Congo hCoV-19/DRC/2827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8655T C14408T C15324T A23403G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_437350
 2020-04-16 2020-05-08
 Democratic Republic of the Congo hCoV-19/DRC/2855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G7936T C14408T C15324T G15708T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_437384
 2020-04-16 2020-05-08
 United States hCoV-19/USA/MN-MDH-637/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T A27821G G28851T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_437385
 2020-04-16 2020-05-08
 United States hCoV-19/USA/MN-MDH-640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38R C241T C1059T C3037T A5309G C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_437408 MT450894
 2020-04-16 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T G29868A C29870M

EPI_ISL_437409 MT450895
 2020-04-16 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0194/2020
 ATTAAAG1- C241T C1059T C1917T C3037T C14408T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_437410 MT450896
 2020-04-16 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_437420 MT450906
 2020-04-16 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0205/2020
 ATTAAAGGTTTATAC1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_437425 MT450911
 2020-04-16 2020-05-08
 United States SARS-CoV-2/human/USA/VA-DCLS-0210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10377T C12073T C14408T A23403G G25563T

EPI_ISL_437524
 2020-04-16 2020-05-11
 United States hCoV-19/USA/OR-OHSU-0027/2020
 G208T C241T C884T C1059T C3037T T3312C C6487T A9587G A10323G C14408T A23403G G25563T C29730T

EPI_ISL_437719
 2020-04-16 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah217/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437720
 2020-04-16 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah218/2020
 C241T G1580A C3037T C14408T C18877T A23403G G25563T

EPI_ISL_437721
 2020-04-16 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah220/2020
 C241T C3037T C7765T C14408T A23403G

EPI_ISL_437722
 2020-04-16 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah225/2020
 A29C G4180A C8782T G22468T C26464T T28144C G28878A G29742A

EPI_ISL_437723
 2020-04-16 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah227/2020
 C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_437724
 2020-04-16 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah228/2020
 C241T C1441T C3037T C14408T C18877T A23403G G25563T C26735T C28000T

EPI_ISL_437725
 2020-04-16 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah229/2020
 C8782T C9474T G22468T T28144C G29742A A29752G

EPI_ISL_437726
 2020-04-16 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah230/2020
 C241T C1441T C3037T C14408T A23403G G25563T C26735T C28000T

EPI_ISL_437727
 2020-04-16 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah231/2020
 C8782T C9474T G22468T T28144C G28878A G29742A A29752G

EPI_ISL_437728
 2020-04-16 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah232/2020
 C241T C1441T C3037T C14408T C18877T A23403G G25563T C26735T C28000T

EPI_ISL_437729
 2020-04-16 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah233/2020
 C241T C1441T C3037T G3250T C14408T C18877T C22444T A23403G G25563T C26735T C28000T G29742A

EPI_ISL_437730
 2020-04-16 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah234/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C28000T

EPI_ISL_437731
 2020-04-16 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah236/2020
 C3037T C14408T C18877T C22444T A23403G G25563T C26735T C27371T C28854T G29742A

EPI_ISL_437732
 2020-04-16 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Makkah237/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437777 MT482124
 2020-04-16 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0138/2020
 C241T C3037T C14408T C15324T A21137G G21334T A23403G C23635T

EPI_ISL_437778 MT482125
 2020-04-16 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0139/2020
 ATTAAAGGT1- C241T C3037T C14408T C15324T A21137G A23403G C23635T C29870A

EPI_ISL_437779 MT482126
 2020-04-16 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0140/2020
 A1- C241T C3037T C14408T C15324T A21137G A23403G C23635T C29870M

EPI_ISL_437783 MT482130
 2020-04-16 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C9521T C14408T C15324T A21137G A23403G C23635T

EPI_ISL_437795 MT482142
 2020-04-16 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0162/2020
 AT1- C241T C1059T C3037T G4510C C14408T G23311T A23403G G25563T

EPI_ISL_438192
 2020-04-16 2020-05-12
 United States hCoV-19/USA/WA-S639/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_438571
 2020-04-16 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81131/2020
 C241T C3037T C13774T C14408T A23403G GGG28881AAC

EPI_ISL_438937
 2020-04-16 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28531T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438966
 2020-04-16 2020-05-12
 Japan hCoV-19/Japan/Donner22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2044T C3037T C14408T C20091T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438967
 2020-04-16 2020-05-12
 Japan hCoV-19/Japan/Donner23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C22227Y A23403G T26966A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_443489
 2020-04-16 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8430B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_444210
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/LOND-D531A/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444211
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5329/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444212
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5338/2020
 A126T C241T C3037T G5917A C14408T C18755T A23403G T23849C GGG28881AAC

EPI_ISL_444228
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/LOND-D54F9/2020
 C241T C1059T C3037T C14408T C18171T A23403G G24368T G25563T

EPI_ISL_444229
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5514/2020
 C241T C3037T C3817T T14133C C14408T A23403G GGG28881AAC

EPI_ISL_444230
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5523/2020
 G11083T C14805T G17523T C23707T G26144T

EPI_ISL_444231
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5532/2020
 C241T C3037T C3817T T14133C C14408T A23403G GGG28881AAC

EPI_ISL_444232
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5541/2020
 C241T C3037T A11537G C14408T A23403G

EPI_ISL_444233
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5550/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444235
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/LOND-D557E/2020
 C241T C3037T T11457C C14408T G17151A A23403G G25009A C25350T

EPI_ISL_444279
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/BIRM-5E2A3/2020
 C241T C3037T C14408T C15277T A23403G GGG28881AAC

EPI_ISL_444280
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/BIRM-5E2B2/2020
 C241T C1909T C2939T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_444281
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/BIRM-5E2C1/2020
 C241T C1909T C3037T G10097A C14408T A23403G C23731T G25690T G28580T GGG28881AAC

EPI_ISL_444283
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/BIRM-5E2EF/2020
 C241T C2790T C3037T G10097A C11001T C14408T G16137T G20610T A23403G C23731T C27131T G28580T GGG28881AAC

EPI_ISL_444285
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/BIRM-5E30A/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29449T

EPI_ISL_444397
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7FBED/2020
 C241T C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_444439
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80E95/2020
 C241T C527T T2383G C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_444446
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80F0B/2020
 C241T C3037T G5008A C13730T A14121G C14408T A23403G G25429T

EPI_ISL_444447
 2020-04-16 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80F1A/2020
 C241T C3037T C14408T T19791C A23403G G24173T GGG28881AAC

EPI_ISL_444969
 2020-04-16 2020-05-14
 China hCoV-19/Guangdong/SYSU-IHV/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_445233
 2020-04-16 2020-05-15
 Sweden hCoV-19/Sweden/20-07452/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_446923
 2020-04-16 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-34452/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A23403G C27509Y GGG28881AAC G29395C

EPI_ISL_446926
 2020-04-16 2020-05-16
 United Kingdom hCoV-19/Wales/PHWC-3448F/2020
 A1- C241T G1589R C3037T C14408T A23403G G25429T G29474T

EPI_ISL_447334
 2020-04-16 2020-05-17
 Israel hCoV-19/Israel/2115990/2020
 C14408T G22344A AAAAAAAAAAAA29892-

EPI_ISL_447337
 2020-04-16 2020-05-17
 Israel hCoV-19/Israel/2115968/2020
 C241T C3037T C13501T G13618T C14408T C18877T G21123T A23403G G25563T G28371T AAAAAAAAAAAA29892-

EPI_ISL_447338
 2020-04-16 2020-05-17
 Israel hCoV-19/Israel/2115964/2020
 C241T C1059T C3037T C11916T C14408T C18998T G22205A A23403G G25563T G27261A G29540A G29781T AAAAAAAAAAAA29892-

EPI_ISL_447339
 2020-04-16 2020-05-17
 Israel hCoV-19/Israel/2115701/2020
 C241T C2416T C3037T C14408T A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_447462
 2020-04-16 2020-05-17
 Israel hCoV-19/Israel/130710217/2020
 C1059T C3037T C14408T G25563T G29705- AAAAAAAAAAAA29892-

EPI_ISL_447463
 2020-04-16 2020-05-17
 Israel hCoV-19/Israel/130710211/2020
 C241T C2416T C3037T C14408T A23403G G25563T G25855T AAAAAAAAAAAA29892-

EPI_ISL_447583
 2020-04-16 2020-05-17
 India hCoV-19/India/CCMB_L007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G5846A C6312A G11083A C13458T C13730T C23929T C28311T

EPI_ISL_447584
 2020-04-16 2020-05-17
 India hCoV-19/India/CCMB_C1-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G2632T C6312A G11083T C13730T C23929T C25613T C28311T

EPI_ISL_447585
 2020-04-16 2020-05-17
 India hCoV-19/India/CCMB_C2-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G2632T C6312A G11083T C13730T C23929T C25613T C28311T

EPI_ISL_447586
 2020-04-16 2020-05-17
 India hCoV-19/India/CCMB_C3-14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G2632T C6312A G11083T C13730T C23929T C25613T C28311T

EPI_ISL_447860
 2020-04-16 2020-05-18
 India hCoV-19/India/CCMB_K849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C19524T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_447861
 2020-04-16 2020-05-18
 India hCoV-19/India/CCMB_L149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_447864
 2020-04-16 2020-05-18
 India hCoV-19/India/CCMB_L044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G4255T C4345T A5877C C6312A G11083T A11742G C13458T C13730T A19721C C23929T A25983G C28311T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_448877
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/SHEF-CB62D/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_448907
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/SHEF-D0986/2020
 C241T C3037T G7736A C14408T C14585T C15324T C17795T A23403G

EPI_ISL_449149
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C4755T G11083T C14805T T17247C G26144T C29870H

EPI_ISL_449152
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/NORW-E844E/2020
 AT1- C241T C3037T G11083K C14408T A23403G C25728T GGG28881AAC

EPI_ISL_449153
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C4755T G11083T C14805T T17247C G26144T

EPI_ISL_449154
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/NORW-E84A8/2020
 ATTAAAG1- C241T C3037T G4962T C14408T C21736T A23403G C25728T GGG28881AAC C29870V

EPI_ISL_449158
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/NORW-E851E/2020
 ATTAAAG1- C4755T G11083T C14805T T17247C G26144T

EPI_ISL_449161
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8587/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G A24232G G25429T

EPI_ISL_449173
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8693/2020
 ATTAAAGGTTTA1- C241T C1348T C3037T C3653T C14408T A23403G C24904T GGG28881AAC C29870S

EPI_ISL_449174
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/NORW-E86A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T10006C C14408T A23403G G25166C GGG28881AAC

EPI_ISL_449227
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3340T C5407T G12070T C14408T T17126C A20268G G22335T A23403G A27578T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449229
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449679
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D4D0E/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_449698
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D559C/2020
 C241T C3037T C14408T A23403G

EPI_ISL_449702
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D55D8/2020
 C241T C3037T A10948G C14408T A23403G C27542T GGG28881AAC

EPI_ISL_449703
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D55E7/2020
 C241T C3037T A11537G C14408T A23403G

EPI_ISL_449704
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D55F6/2020
 C241T C3037T C9979T C14408T A23403G GGG28881AAC

EPI_ISL_449705
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D5602/2020
 C241T C3037T T12739C C14408T C20936T A23403G GGG28881AAC

EPI_ISL_449707
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D5620/2020
 A2480G C2558T G11083T C14805T G26144T C29670T

EPI_ISL_449708
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D564E/2020
 C241T G472T C1059T C3037T C14408T C21381T G22813T A23403G G24368T G25563T

EPI_ISL_449709
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D565D/2020
 C241T C3037T A9243G C14408T C21481T A23403G C25350T

EPI_ISL_449710
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D567B/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_449711
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D568A/2020
 C241T C3037T C9979T C14408T A23403G GGG28881AAC

EPI_ISL_449712
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D5699/2020
 C241T C3037T C14408T A23403G T24289C GGG28881AAC

EPI_ISL_449713
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D56A8/2020
 C241T C3037T C14408T A23403G T24289C GGG28881AAC

EPI_ISL_449714
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D56C6/2020
 C241T C3037T T4200G C14408T G19086T A23403G GGG28881AAC

EPI_ISL_449715
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D56E4/2020
 C241T C3037T C8074T C9438T C14408T C20133T A23403G C23638T GGG28881AAC

EPI_ISL_449716
 2020-04-16 2020-05-19
 United Kingdom hCoV-19/England/LOND-D56F3/2020
 C241T C3037T T8356G C14408T A23403G GGG28881AAC

EPI_ISL_449967 MT641567
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S797/2020
 C241T C1059T C3037T C14408T A23403G G25563T A28733T G29553A

EPI_ISL_449968 MT641557
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S798/2020
 C241T C1059T C3037T T6791A C10582T C14408T A23403G G25563T

EPI_ISL_449969 MT641606
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S799/2020
 C241T C1059T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_449970 MT641492
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S800/2020
 C241T C829T C1059T C3037T T6791A C10582T C14408T G22381T A23403G G25563T

EPI_ISL_449971 MT641524
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S801/2020
 C241T C884T C1059T C3037T C10582T C14408T A23403G

EPI_ISL_449972 MT641610
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S802/2020
 C8782T G15406A C17010T C17747T A17858G C18060T T28144C

EPI_ISL_449973 MT641584
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S803/2020
 C8782T G15406A C17010T C17747T A17858G C18060T T28144C

EPI_ISL_449981 MT641553
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S811/2020
 G1401A C8782T T13438C C17747T A17858G C18060T T28118C T28144C

EPI_ISL_449991 MT641596
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S821/2020
 C8782T G15406A C17010T C17747T A17858G C18060T T28144C

EPI_ISL_449992 MT641598
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S822/2020
 C8782T C17010T C17747T A17858G C17934T C18060T T28144C

EPI_ISL_449993 MT641555
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S823/2020
 G1401A G3304A C8782T T13438C C17747T A17858G C18060T T28144C

EPI_ISL_449995 MT641587
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S825/2020
 G1401A C2675T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_449996 MT641512
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S826/2020
 C241T A2161G C3037T C14408T C16376T C18877T G19648T A23403G G25563T

EPI_ISL_449997 MT641595
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S827/2020
 C8782T G15406A C17010T C17747T A17858G C18060T T28144C

EPI_ISL_449998 MT641493
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S828/2020
 T111A C241T A939G C1059T T1211G C3037T C14408T A23403G A23813G G24985T G25563T C27964T

EPI_ISL_450000 MT641585
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S830/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_450001 MT641523
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S831/2020
 C241T C379A C1059T T2244C C3037T C3177T C14408T A23403G G25563T

EPI_ISL_450002
 2020-04-16 2020-05-19
 United States hCoV-19/USA/WA-S832/2020
 C241T C1059T C3037T A4166G C14408T A23403G G25563T C27945T

EPI_ISL_450003 MT641570
 2020-04-16 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S833/2020
 C241T C1059T C3037T C14408T A23403G G25563T G27890T

EPI_ISL_450242
 2020-04-16 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII6704V/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_450243
 2020-04-16 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII6790V/2020
 C241T C3037T C14195A C14408T A23403G

EPI_ISL_450247
 2020-04-16 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7039V/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_450718
 2020-04-16 2020-05-22
 United States hCoV-19/USA/IL-UW-364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_452080
 2020-04-16 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-240/2020
 C241T C1059T C1302T C3037T C6401G C14408T A21851G A23403G G25563T C26270T C28744T C29441A

EPI_ISL_452166
 2020-04-16 2020-05-27
 United States hCoV-19/USA/UT-01979/2020
 C241T C3037T G3518T C13536T C14408T A23403G T29672C

EPI_ISL_452167
 2020-04-16 2020-05-27
 United States hCoV-19/USA/UT-01980/2020
 C241T C3037T G3518T C13536T C14408T A23403G T29672C C29870A

EPI_ISL_452172
 2020-04-16 2020-05-27
 United States hCoV-19/USA/UT-01986/2020
 C241T C3037T G3518T C13536T C14408T C17402T G21785C A23403G T29672C

EPI_ISL_452173
 2020-04-16 2020-05-27
 United States hCoV-19/USA/UT-01987/2020
 C241T C3037T G3518T C13536T C14408T A23403G T29672C G29868A

EPI_ISL_452192
 2020-04-16 2020-05-27
 India hCoV-19/India/NIV-10380/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452193
 2020-04-16 2020-05-27
 India hCoV-19/India/NIV-10419/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T G2879A C3037T C5700A C14408T A23403G GGG28881AAC A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452816 MT558667
 2020-04-16 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0241/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C11916T C13252T C14408T A23403G C23604T G25563T C29358T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_452817 MT558668
 2020-04-16 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0243/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C13252T C14408T A23403G C23604T G25563T C29358T

EPI_ISL_452818 MT558669
 2020-04-16 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0244/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C13252T C14408T A23403G C23604T G25563T C29358T

EPI_ISL_452819 MT558670
 2020-04-16 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0245/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C13252T C14408T A23403G C23604T G25563T C29358T

EPI_ISL_452820 MT558671
 2020-04-16 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C11916T C13252T C14408T A23403G C23604T G25563T C29358T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_452821 MT558672
 2020-04-16 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0247/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C8240T C11916T C13252T C14408T A23403G C23604T G25563T C29358T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_452823 MT558674
 2020-04-16 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0249/2020
 ATTA1- C241T C1059T C3037T C9491T C14408T C14925T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_453062
 2020-04-16 2020-05-27
 United Kingdom hCoV-19/Scotland/CVR2596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C541T C1059T C3037T G11083T C14408T A16579G C20270T A23403G G25563T C26111T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_453074
 2020-04-16 2020-05-27
 United Kingdom hCoV-19/Scotland/CVR2735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_453771
 2020-04-16 2020-05-27
 United Kingdom hCoV-19/England/SHEF-D2438/2020
 C241T C1190T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_454499
 2020-04-16 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/16537/2020
 C8782T T9477A C14805T C24337T G25979T T28144C C28657T C28863T C29635T

EPI_ISL_454500
 2020-04-16 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/18243/2020
 C8782T T9477A C14805T C21575T G25979T T28144C C28657T C28863T

EPI_ISL_454579
 2020-04-16 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/18148/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454580
 2020-04-16 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/18287/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454611 MT533208
 2020-04-16 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G252T C3037T C5467T C8389T G8785A C11962Y C14408T C19554Y C20710M T21981W A22461R A23403G G25563T T29607Y CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_454613 MT533210
 2020-04-16 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1276/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G8525A A17482G T21126C G24815S C28887T A29163R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_454729 MT536975
 2020-04-16 2020-05-28
 United States SARS-CoV-2/Human/USA/UT-02016/2020
 C241T C1059T C3037T C4878T G12131T C14408T A23403G G25563T C27964T G29449T A29869R

EPI_ISL_454866
 2020-04-16 2020-05-29
 India hCoV-19/India/THSTI-BAL_914/2020
 C6312A G11083T C13730T C18486T C23929T C28311T G28460A

EPI_ISL_454867
 2020-04-16 2020-05-29
 India hCoV-19/India/THSTI-BAL_918/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_456102
 2020-04-16 2020-06-01
 Brazil hCoV-19/Brazil/RJ-2057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456103
 2020-04-16 2020-06-01
 Brazil hCoV-19/Brazil/RJ-2062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16968T C17733T C20178T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456104
 2020-04-16 2020-06-01
 Brazil hCoV-19/Brazil/RJ-2072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456105
 2020-04-16 2020-06-01
 Brazil hCoV-19/Brazil/RJ-2077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16843T A23403G G24947T T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_456106
 2020-04-16 2020-06-01
 Brazil hCoV-19/Brazil/RJ-2078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17280T A23403G T27299C GGG28881AAC T29148C CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_457081
 2020-04-16 2020-06-02
 United Kingdom hCoV-19/England/EXET-13565A/2020
 G11083T C14805T C18086T G26144T G28842T

EPI_ISL_457115
 2020-04-16 2020-06-02
 United Kingdom hCoV-19/England/EXET-135906/2020
 C241T T1490A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457197
 2020-04-16 2020-06-02
 United Kingdom hCoV-19/England/EXET-1360D3/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457200
 2020-04-16 2020-06-02
 United Kingdom hCoV-19/England/EXET-13611C/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_457271
 2020-04-16 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5893/2020
 C241T C3037T A10948G G11596T C14408T A23403G G26754A G26774T C27542T A28837G GGG28881AAC

EPI_ISL_457280
 2020-04-16 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5936/2020
 C241T G677A C3037T A3381G G6463T T9172C A10948G T14336C C14408T G17427T G20568T A23403G C27002T GGG28881AAC

EPI_ISL_457281
 2020-04-16 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5945/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457283
 2020-04-16 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5981/2020
 G1397A T6549C T9037C G11083T G14653A C15240T C19011T C19113T G22898A C28311G T28688C G29742T

EPI_ISL_457293
 2020-04-16 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5A42/2020
 C241T C3037T A3234G T4946G C14408T A23403G GGG28881AAC C29281T

EPI_ISL_457584
 2020-04-16 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C1029/2020
 ATG1605- C6016T C6696T C11001T C12053T C27005T

EPI_ISL_457603
 2020-04-16 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C42B7/2020
 C241T C3037T C14408T C16101T A18616G A23403G GGG28881AAC

EPI_ISL_457654
 2020-04-16 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CC6E0/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_457679
 2020-04-16 2020-06-02
 United Kingdom hCoV-19/England/SHEF-D0F57/2020
 C241T C1190T C3037T C8247T C14408T A23403G GGG28881AAC

EPI_ISL_460584
 2020-04-16 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20536/2020
 C241T C1059T C3037T C14408T C22855T A23403G G25563T T27523Y AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460617 MT560525
 2020-04-16 2020-06-04
 Turkey SARS-CoV-2/human/TUR/IMU-SP-02/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C A23403G TTCAAGAAA28852- GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

EPI_ISL_460619 MT560531
 2020-04-16 2020-06-04
 Turkey SARS-CoV-2/human/TUR/IMU-SP-04/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

EPI_ISL_460658
 2020-04-16 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460940
 2020-04-16 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T C10408T G11596T C14408T C18555T C19955T A23403G A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461133
 2020-04-16 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461134
 2020-04-16 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T18417C C20148T A23403G C27213T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461316
 2020-04-16 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461317
 2020-04-16 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C17977T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461322
 2020-04-16 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461338
 2020-04-16 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461344
 2020-04-16 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461795
 2020-04-16 2020-06-06
 United Kingdom hCoV-19/England/NORT-28ADBA/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_461797
 2020-04-16 2020-06-06
 United Kingdom hCoV-19/England/NORT-28AF0F/2020
 C241T G1636T C3037T C14408T A23403G T27984C GGG28881AAC

EPI_ISL_463363 MT642068
 2020-04-16 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C1663T C3037T C14214T C14408T A15426G C18029T C19029T A23403G G25563T C26208T T29410C G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463364 MT642405
 2020-04-16 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S874/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C10582T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463365 MT642359
 2020-04-16 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S875/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C10582T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463366 MT642383
 2020-04-16 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S876/2020
 AT1- C241T C1059T C3037T C10582T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_465178
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20169004504/2020
 C241T C3037T C4002T G10097A T10123C C13536T C14408T A23403G C23731T C27970T GGG28881AAC AA29882TT

EPI_ISL_465196
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20169014604/2020
 C241T C2416T C2453T C3037T G11083T C11102T C14408T C14786T C16466Y G20578T T22362K A22505W A23403G G25563T

EPI_ISL_466543
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20166017804/2020
 C241T C1912T C3037T C7200T C8290T C14408T A23403G GGG28881AAC A29871G

EPI_ISL_466563
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20166064004/2020
 C241T C3037T A4939R G10097A A10212W C14408T G21950K A23403G C23731T G28580T GGG28881AAC

EPI_ISL_466574
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20166069304/2020
 C241T C3037T T4462G C7392Y C14408T C14937T A23403G C28708G GGG28881AAC

EPI_ISL_466577
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20166069904/2020
 C241T C3037T T4462G C14408T C14937T G19729S A23403G C26110T C28708G GGG28881AAC

EPI_ISL_466592
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20168001704/2020
 A2480G C2558T C2937Y G3755A A4572C C14805T C21575T G21800T G22927T G26144T A29871G

EPI_ISL_466594
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20168002804/2020
 A2480G C2558T C5467T G11083T C14805T G26144T C28887T A29871G

EPI_ISL_466596
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20168003204/2020
 C241T C3037T C14408T C23086T A23403G A27237G GGG28881AAC

EPI_ISL_466597
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20168004104/2020
 C241T C3037T T14191C C14408T A23403G GGG28881AAC

EPI_ISL_466599
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20168005504/2020
 C241T C3037T C3218Y T4074Y A5242T T7707W C14408T C21130Y A23403G T25975K GGG28881AAC C29738T

EPI_ISL_466603
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20168026204/2020
 A2480G C2558T C5467T C14805T G26144T C28887T A29873W

EPI_ISL_466606
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20168032004/2020
 G1440A G2891A C4475T C7011T G27670T G28077T

EPI_ISL_466608
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20168032404/2020
 C241T G845T C3037T C14408T C19859Y A23403G GGG28881AAC

EPI_ISL_466611
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20168035004/2020
 C241T C3037T C14408T G21624T A23403G GGG28881AAC A29877R

EPI_ISL_466612
 2020-04-16 2020-06-11
 United Kingdom hCoV-19/England/20168035104/2020
 C241T C3037T C9561T C14408T G14948K G19962K G21624T T23227Y A23403G GGG28881AAC

EPI_ISL_467347
 2020-04-16 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C643T C3037T C14408T G19684T A22720G A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467782 MT680217
 2020-04-16 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0385/2020
 C241T C1059T C3037T A13318G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_467943 MT635654
 2020-04-16 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C1917T C3037T C5348T C14408T A23403G G25563T C29870A

EPI_ISL_467944 MT635655
 2020-04-16 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C1917T C3037T C14408T A23403G G25563T G29868R C29870A

EPI_ISL_468066 MT605818
 2020-04-16 2020-06-14
 Turkey SARS-CoV-2/human/TUR/IMU-SP-03/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T T19839C A23403G TTCAAGAAA28852- GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871G

EPI_ISL_468545 MT628268
 2020-04-16 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1616/2020
 ATTAA1- C4113Y C4776T C8782T C16887T C17104T C17747T A17858G C18060T G22131A G28086T T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_469095
 2020-04-16 2020-06-17
 Singapore hCoV-19/Singapore/341/2020
 T3615C C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469531
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1282A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T T6343C G11083T C14520T C14805T G26144T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469539
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-128010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469557
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127B5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6617A C8299T C9724T C14408T C19185T A23403G C24909T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469559
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1280C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C504T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469566
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-128371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C421T A2480G C2558T C2706T A7025G C9724T G11083T A12594R C14805T G21606T G26144T G28325A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469570
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12814A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T G4720A C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469571
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-128423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T CT14408TC G15957A A23403G C25728T C28732T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469581
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-128177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T C16830T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469600
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12847E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469604
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12846F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469607
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127FE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T C14408T G19300T A20268G C22388T A23403G C27509T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469612
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1282CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T T6343C G11083T C14520T C14805T G26144T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469621
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1280A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13617T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469629
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127AD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G3638T C14408T A23403G G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469638
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-128353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T201C A2480G C2558T C2706T A7025G C9724T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469664
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12849C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T A16448R C19465Y G20578T A23403G G25563T C25678T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469666
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1281E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469677
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12865A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C6651T C14408T A23403G C28651Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469683
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1283BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G10096A C14408T A23403G G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469694
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-128414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16380C C23114T G23311T A23403G G26416T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469714
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12804D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469715
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-128450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C14408T C19374Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469721
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-128405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T A2480G C2558T T4330C C10029Y G11083T C14805T C16658Y G26144T T27384C C28748T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469740
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1281A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC T28927Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469747
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-128344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2706T A7025G C9724T G11083T C14805T C18464T G26144T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_469768
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12854E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T G7360T G11083T G12338A C14408T G16861T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469770
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-128335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C421T A2480G C2558T C2706T A7025G C9724T G11083T A12594R C14805T G21606T G26144T G28325A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469773
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1282B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T T6343C G11083T C14805T G26144T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469786
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-128256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G10096A G11222K C14408T A23403G G25563T G26172T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469799
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12848D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C8316T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469801
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-128308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G9130T C19862Y C20270T C26735T C29119T A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470331
 2020-04-16 2020-06-18
 United Kingdom hCoV-19/England/CAMB-1AAB7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471796
 2020-04-16 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20775/2020
 C241T C1059T C3037T C14408T G16647T A17289G A23403G G25563T

EPI_ISL_471851
 2020-04-16 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20830/2020
 C241T C1059T C3037T A3684R C14408T A17048C A23403G G25563T C29370Y

EPI_ISL_473020
 2020-04-16 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160B66/2020
 A1- C241T C1059T C3037T C10376Y C14408T G18583T A23403G G23868T G24368T G25563T G27390C G29773T

EPI_ISL_473516
 2020-04-16 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A905G C3037T C14408T C17339T A23403G C23604T C25886T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473517
 2020-04-16 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473518
 2020-04-16 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13536T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473519
 2020-04-16 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C15017T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473521
 2020-04-16 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8131T G11083T G12070T C14408T T17126C A20268G G22335T A23403G A27578T G29688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473522
 2020-04-16 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3095C C14408T C14786T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473524
 2020-04-16 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6673C C14408T G15438T A20268G C21575T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473526
 2020-04-16 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C6762T G8371T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473527
 2020-04-16 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6591R C14408T C18060T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473528
 2020-04-16 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2647/2020
 C241T G343T C3037T C14408T C22879A A23403G

EPI_ISL_473529
 2020-04-16 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2670/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_474982
 2020-04-16 2020-06-23
 Israel hCoV-19/Israel/CVL-n-8405/2020
 C66A C241T C1059T C3037T C7851T C10252T C11916T C14408T C17304T C18998T A23403G G25563T G26529T C27059T G27666T G29540A

EPI_ISL_474983
 2020-04-16 2020-06-23
 Israel hCoV-19/Israel/CVL-n-8414/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T A26161G G29392A G29540A

EPI_ISL_475008
 2020-04-16 2020-06-23
 Israel hCoV-19/Israel/CVL-n-8411/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_475157
 2020-04-16 2020-06-23
 Sweden hCoV-19/Sweden/20-50900/2020
 C241T C3037T C12400T C14408T T19839C A23403G G23426T C24099T G27952A GGG28881AAC G29781T

EPI_ISL_477967
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C8626T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477969
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477971
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3294Y C5002T C6347T C10798A C13862T C14408T G18225T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477972
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3689A T11660A C14408T A21875G A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477973
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2399T C3037T A11430G C14408T G19117T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477974
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21638T G23126T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477977
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2399T C3037T C10335T A11430G C14408T G19117T A23403G A27232G GGG28881AAC C28940T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477978
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477979
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A C3037T C3411T C3885T A5353G A7367C C14408T C17104T A20268G T22312C A23403G C26606T C28253T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477980
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3689A T11660A C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477981
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A C3037T C3411T C3885T C14408T C17104T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477983
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A C3037T C3411T C3885T C14408T C17104T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477984
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G701T C1059T C3037T T5035C A12790G C14408T A23403G A24539G G25563T C29311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477985
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21304A A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477986
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3411T C3885T A5353G A7367C C14408T C17104T A20268G A23403G C26606T C28253T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477995
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T G23126T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478003
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17278T G20438T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478005
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478799
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFA50/2020
 C241T C3037T A11519G C14408T A23403G GGG28881AAC AA29898RR

EPI_ISL_478801
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFA9C/2020
 C241T C3037T C10818T C14408T A23403G G24781T GGG28881AAC G29449T

EPI_ISL_478802
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFABA/2020
 AT1- C241T C3037T C14408T G22592T A23403G GGG28881AAC

EPI_ISL_478806
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFB3F/2020
 C241T C3037T C12153T C13862T C14408T C19186T A23403G C28836T

EPI_ISL_478809
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFB7B/2020
 G174A C241T C2416T C3037T C8352T C11653T C14408T C14786T G20578T A23403G G25563T C28435T

EPI_ISL_478810
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFBB7/2020
 AT1- C241T C3037T A13904G C14408T T19839C A23403G C26681T GGG28881AAC A29896M AA29902-

EPI_ISL_478814
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFC3C/2020
 A5W C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC AAAAA29899-

EPI_ISL_478816
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFC5A/2020
 C241T C593T C3037T C14408T C16260T G18340T T19839C A23403G C26681T GGG28881AAC A29903-

EPI_ISL_478819
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFCB4/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_478823
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFD1B/2020
 C241T C3037T C9532T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_478824
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFD57/2020
 ATTAAA1- C241T C2142T C3037T C14408T C19170T G19509A C21575T A23403G GGG28881AAC T29728G AA29902-

EPI_ISL_478832
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFE90/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_478860
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0184/2020
 C241T C3037T G10097A C13860T C14408T A23403G C23731T GTGCCA27626- G28580T GGG28881AAC AAA29901-

EPI_ISL_478926
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-B09B9/2020
 ATTAAA1- C241T C3037T C6723T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_478929
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0A4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C5817T C14408T A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_478992
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1095/2020
 C241T C3037T C12325T C14408T T18831C C19186T A23403G GGG28881AAC AAAAAAA29897-

EPI_ISL_479043
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1772/2020
 C241T C3037T C13424T C14408T A23403G A28779G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_479052
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-B18F7/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C6627T A11740T C14408T A23403G G25563T G29291A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_479073
 2020-04-16 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1B3A/2020
 ATTAAA1- C241T C1059T C3037T C6627T A11740T C14408T A23403G G25563T G29291A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_479578
 2020-04-16 2020-06-30
 Singapore hCoV-19/Singapore/500/2020
 A5998R C6310A C6312A G11083T C13730T C19524T A21505R T22119C C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_481225
 2020-04-16 2020-07-02
 Belgium hCoV-19/Belgium/UGent-129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G G25599T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481513
 2020-04-16 2020-07-03
 Finland hCoV-19/Finland/16A52S11/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T C22432T A23403G G24368T G25563T G27731T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481566
 2020-04-16 2020-07-03
 Finland hCoV-19/Finland/16A24S14/2020
 C241T C2110A C3037T C14408T C14676T C19263T A23403G G29243A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481567
 2020-04-16 2020-07-03
 Finland hCoV-19/Finland/16A25S14/2020
 C241T C2110A C3037T C14408T C14676T C19263T A23403G G29243A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481568
 2020-04-16 2020-07-03
 Finland hCoV-19/Finland/16A68S11/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482347
 2020-04-16 2020-07-03
 United States hCoV-19/USA/OR-PROV-070/2020
 C241T C3037T C11563T C14408T C18877T A23403G G25563T

EPI_ISL_482348
 2020-04-16 2020-07-03
 United States hCoV-19/USA/OR-PROV-073/2020
 C241T T833C C1059T C3037T C6285T T11127C C14408T C16289T C23315T A23403G G25563T C27964T

EPI_ISL_482349
 2020-04-16 2020-07-03
 United States hCoV-19/USA/OR-PROV-074/2020
 C241T C3037T C14408T A20268G A23403G C29835-

EPI_ISL_483345
 2020-04-16 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0766-SAN/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C1887T C3037T C14408T C18713T A23403G G25563T

EPI_ISL_483349
 2020-04-16 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0773-SAN/2020
 C241T C920T C3037T C14408T A20268G A23403G T23449C C28854T

EPI_ISL_483468
 2020-04-16 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1022-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7279T C14408T A19540G A20268G A23403G G26834A C28854T

EPI_ISL_484603
 2020-04-16 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C4456T C12710T G17592T C21575T C27737T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484604
 2020-04-16 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484605
 2020-04-16 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C15017T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484608
 2020-04-16 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4054C C10798A C12733T C13862T C14408T A23403G C24707A C28603Y C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484610
 2020-04-16 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G C24642T G25429T C27577T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484611
 2020-04-16 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11003T C14408T C18508Y A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484612
 2020-04-16 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C5184T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484624
 2020-04-16 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3425T C14408T A20268G A23403G G25437T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484626
 2020-04-16 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21304A A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485161
 2020-04-16 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1457T C3037T A6944C C8950T C14408T C17444A A23403G G25563T G26834T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485165
 2020-04-16 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1188T C2878T C3037T C4570T C14408T C15701T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485170
 2020-04-16 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15380T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485172
 2020-04-16 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485173
 2020-04-16 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26556535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T T27132C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485950
 2020-04-16 2020-07-10
 United States hCoV-19/USA/UN-UW-2096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C36T C241T C1059T C3037T C14408T C17977A A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_485951
 2020-04-16 2020-07-10
 United States hCoV-19/USA/UN-UW-2099/2020
 ATTAAAGGTTTAT1- CCCAGGTAACAAACCAA19- C36T C241T C1059T C3037T C6990T C12880T C14408T A23403G G25563T G27877T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_486122 MT750334
 2020-04-16 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1793/2020
 ATTA1- C241T C379A C1059T C3037T C14408T A20503G A23122R A23403G G25563T

EPI_ISL_486123 MT750335
 2020-04-16 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1794/2020
 ATT1- C241T C1471T C3037T C4002Y C14408T G18898T A23122R A23403G T25902W T25908W G25913S G27226T GGG28881AAC C28896G T29867H C29870M

EPI_ISL_486124 MT750336
 2020-04-16 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C3037T C14408T G18898T C21772T A23122R A23403G C25000Y T25902W T25908W G25913S GGG28881AAC AAAA29900-

EPI_ISL_486125 MT750337
 2020-04-16 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1796/2020
 A1- C241T C3037T T3877K T4711C A6709G C14408T A23122R A23403G GGG28881AAC

EPI_ISL_486126 MT750338
 2020-04-16 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C3037T C14408T C17999T C18401Y G18898T C21772T A22904M A23122V A23403G T25902W T25908W G25913S T26168A C27903M G27906S A28081R GGG28881AAC AAAAA29899-

EPI_ISL_486127 MT750339
 2020-04-16 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1798/2020
 AT1- C241T C3037T T4711C C5784Y A6709G C14408T A23403G GGG28881AAC

EPI_ISL_486128 MT750340
 2020-04-16 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1799/2020
 ATTA1- C241T C3037T T4711C A6709G C14408T A23122R A23403G T25902W T25908W G25913S GGG28881AAC T29867H

EPI_ISL_486129 MT750341
 2020-04-16 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1800/2020
 ATTAAAGGTTT1- C241T C337Y C379A C1059T C3037T T3877K C14408T A22904M A23122R A23403G G25563T T25902W T25908W G25913S

EPI_ISL_486130 MT750342
 2020-04-16 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1801/2020
 ATTA1- C241T C3037T T4711C A6709G C14408T A23122R A23403G GGG28881AAC A29596G T29867H

EPI_ISL_486131 MT750343
 2020-04-16 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1802/2020
 ATTA1- C241T C3037T T4711C A6709G C14408T A23122R A23403G T25902W T25908W G25913S GGG28881AAC T29867M

EPI_ISL_486132 MT750344
 2020-04-16 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T4711C A6709G C10818Y C14408T G16526K A22904M A23122R A23403G T25902W T25908W G25913S C27999Y G28178K GGG28881AAC T29867Y

EPI_ISL_487694
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5136G C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487713
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3589T G11083T C14805T T16820C A18825G G26144T G26690T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487796
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G C21575Y A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489186
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103AA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C2091Y C3037T C14408T C17004T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489190
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T G17418T A23403G GGG28881AAC C28896T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489195
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103B29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C7423T G8131T G14512T G25855T C28770T G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489196
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103CBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489201
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-1039A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489202
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103BA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489206
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10594T C14408T A17342G A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489215
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103BCF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C14676Y C17004T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489217
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103B47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C17004T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489223
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103B74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C157T C241T C1059T C3037T G11801A C14408T A23403G C25463T G25563T A28627G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489228
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-1038B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G G25947C GTTCTA28090- C28312T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489243
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103BED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489275
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103A68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T212C C241T C3037T C14016T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489317
 2020-04-16 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103A0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T212C C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489727 MT757037
 2020-04-16 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0318/2020
 ATTA1- C241T C3037T A3090G C14408T C18877T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_489728 MT757038
 2020-04-16 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0319/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_489729 MT757039
 2020-04-16 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0320/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_489730 MT757040
 2020-04-16 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0321/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T C11916T C14408T A23403G G25563T G26020T T29128C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_489731 MT757041
 2020-04-16 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0322/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T A23403G G25563T G26020T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_489733 MT757043
 2020-04-16 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0324/2020
 A1- T490A C3177T T3931C C6040T C8782T G12478A C13724T T18736C C24034T A26234G T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_489862 EPI_ISL_491058
 2020-04-16 2020-07-14
 Romania hCoV-19/Romania/ROSV_2492/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C5694T C12534T C14408T C16293T A23403G GGG28881AAC A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_489864 EPI_ISL_491060
 2020-04-16 2020-07-14
 Romania hCoV-19/Romania/ROSV_2794/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T GAAATGCTTGCACATGCAGAAGAAACACGCAAAT4394- C14408T A20268G A23403G A29827T TGCT29829- CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_490567
 2020-04-16 2020-07-15
 United Kingdom hCoV-19/England/NOTT-1126EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490568
 2020-04-16 2020-07-15
 United Kingdom hCoV-19/England/NOTT-1126F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12085T C14408T A23403G G23501T G24368T G25563T G26615T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490569
 2020-04-16 2020-07-15
 United Kingdom hCoV-19/England/NOTT-112705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C4755T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490570
 2020-04-16 2020-07-15
 United Kingdom hCoV-19/England/NOTT-112714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17050A A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491002
 2020-04-16 2020-07-15
 United States hCoV-19/USA/UN-UW-3146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- A35T C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_491661
 2020-04-16 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A23403G A24862G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491670
 2020-04-16 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A23403G A24862G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491687
 2020-04-16 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4551T T5161A C14408T T15756Y T17126C A20268G A23403G G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491909 MT776403
 2020-04-16 2020-07-17
 United States SARS-CoV-2/human/USA/MD_NIDDL_3202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T T6274C C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491943 MT776427
 2020-04-16 2020-07-17
 United States SARS-CoV-2/human/USA/VA_NIDDL_3216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G TATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTT28007- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492042
 2020-04-16 2020-07-18
 Brazil hCoV-19/Brazil/RJ-UFRJ-54093/2020
 ATTAAAGGTTTATACCTTCCCA1- GG23AA C241T C3037T C3743T TC3883- C14408T C21952T A22024G A23403G T27299C GGG28881AAC T29148C C29743T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_492071 MT775831
 2020-04-16 2020-07-19
 Poland SARS-CoV-2/human/POL/PL_P46/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T A9484C C14408T C20759T A23403G G28875A GGG28881AAC C29870M

EPI_ISL_492308
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853A32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492412
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853A41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1572T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492430
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18539BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G13879A G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492496
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/LOND-D7EAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T G4504T G11502K C14408T A23403G T23748C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492760
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/LOND-D8AE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A12541G C14408T A23403G G24368T G25563T G29773T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492886
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C13AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492905
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C3A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C3903T C10778T C11195T C14408T C15216T A23403G C25380T G28077T G28209T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492925
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/NORT-28AF5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C14408T C14786T A23403G GGG28881AAC G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492932
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/NORT-28AEE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13576T C14408T C21846T A23403G C27503T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492935
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/NORT-28AF69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T A27655T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492943
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/NORT-28AE5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC G29513T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492945
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/NORT-28AE99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492947
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/NORT-28ADD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492955
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/NORT-28AE3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7765T G10097A C11074T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492956
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/NORT-28AEC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492959
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/NORT-28ADE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C14408T C14786T A23403G A24010R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492968
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/NORT-28ADF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C14408T C14786T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492969
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/NORT-28AF2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27430A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492973
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/NORT-28AEA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T C18060T A23403G C23731T GGG28881AAC A29622R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492977
 2020-04-16 2020-07-20
 United Kingdom hCoV-19/England/NORT-28AE4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1593T C3037T C14408T A19526G A19573G C22264T G23311C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493603
 2020-04-16 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112C60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12085T C14408T A23403G G23501T G24368T G25563T G26615T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494383
 2020-04-16 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1135/2020
 ATTAAAGGTTTATACCT1- C241T C936T C3037T T5158G C14408T A23403G C25614T

EPI_ISL_494386
 2020-04-16 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1141/2020
 C241T G860A C3037T C14408T A20268G T22483C A23403G G23824T C28854T

EPI_ISL_494444
 2020-04-16 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1219/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494448
 2020-04-16 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_495576
 2020-04-16 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S001092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12789T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498705 MT806766
 2020-04-16 2020-07-27
 United States SARS-CoV-2/human/USA/FL-QDX-224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498706 MT806767
 2020-04-16 2020-07-27
 United States SARS-CoV-2/human/USA/FL-QDX-225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498707 MT806768
 2020-04-16 2020-07-27
 United States SARS-CoV-2/human/USA/FL-QDX-226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G26428T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498708 MT806769
 2020-04-16 2020-07-27
 United States SARS-CoV-2/human/USA/FL-QDX-227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C478T A2480G C2558T G11083T C14805T C17010A C20384T C21575T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500541
 2020-04-16 2020-07-29
 Singapore hCoV-19/Singapore/735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A T8672C G11083T C13730T C19524T C23929T C28311T G28845A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501173
 2020-04-16 2020-07-30
 United States hCoV-19/USA/TX-GCID-192000331/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C5178T C7165T C14293T C14408T C20629T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_501618
 2020-04-16 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260F005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11417T C12367T C14408T C21575T A23403G G25767T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501623
 2020-04-16 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260F014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507096
 2020-04-16 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D3FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C20844T G21255T A23403G C26534T GGG28881AAC G29315C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_507201
 2020-04-16 2020-08-03
 United Kingdom hCoV-19/Scotland/EDB6760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509704 MT844039
 2020-04-16 2020-08-05
 United States SARS-CoV-2/human/USA/WI-CDC-0944/2020
 C241T C14408T T15354C C18877T A21137G A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_512941
 2020-04-16 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH504/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512942
 2020-04-16 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH505/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512943
 2020-04-16 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH506/2020
 C241T C9430T C14408T C18877T T20452C A23403G G25563T C26735T T29476C

EPI_ISL_513228
 2020-04-16 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH726/2020
 C241T C3037T C14408T A23403G G25563T C26735T

EPI_ISL_513229
 2020-04-16 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH727/2020
 C241T C3037T C14408T C18877T G20580C A23403G G25563T C26735T

EPI_ISL_513230
 2020-04-16 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH730/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513530
 2020-04-16 2020-08-13
 Brazil hCoV19/Brazil/RJ-INCA-C22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_513531
 2020-04-16 2020-08-13
 Brazil hCoV19/Brazil/RJ-INCA-C23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G G25135T T27299C GGG28881AAC T29148C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_513532
 2020-04-16 2020-08-13
 Brazil hCoV19/Brazil/RJ-INCA-C24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_513533
 2020-04-16 2020-08-13
 Brazil hCoV19/Brazil/RJ-INCA-C25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2040T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515553
 2020-04-16 2020-08-19
 Brazil hCoV-19/Brazil/SP-612/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G6641A C14408T A23403G G25088T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515561
 2020-04-16 2020-08-19
 Brazil hCoV-19/Brazil/SP-617/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C9857T C12053T C14408T A23403G G25088T GGG28881AAC A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_515563
 2020-04-16 2020-08-19
 Brazil hCoV-19/Brazil/SP-159/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1427T C3037T C12053T C14408T G18907T A23403G G25088T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_523157
 2020-04-16 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T G3231A C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523158
 2020-04-16 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T G3231A C14408T A23403G G25563T C25688T G29449T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523159
 2020-04-16 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1537C C3037T T13006C C14408T A23403G G25563T C25688T C29642T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523420
 2020-04-16 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T G1820A C3037T C8290T C11109T C14408T A17869G A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523607
 2020-04-16 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12496C C14408T C15324T G21399A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523953
 2020-04-16 2020-08-27
 United Arab Emirates hCoV-19/United Arab Emirates/L2004034578/2020
 T4033C C8782T C9700T G11230T TTAAAGTTTCCATTTGGAATCTTGA27266- T28144C G28167A G28878A G29742A

EPI_ISL_523983
 2020-04-16 2020-08-27
 Brazil hCoV-19/Brazil/SP-191/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G4207T C12053T C14408T A23403G G25088T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_525681
 2020-04-16 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-50101-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A14489R A23403G G25563T G27962T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525683
 2020-04-16 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-50112-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3317T C8078T G10754A G11083T C14805T T17247C A20638G G25352T G26144T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526232
 2020-04-16 2020-09-01
 Hungary hCoV-19/Hungary/MH-789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526477
 2020-04-16 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB4090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526687
 2020-04-16 2020-09-01
 United States hCoV-19/USA/NY-MH001827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T A13867G C14408T G20580T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_526754
 2020-04-16 2020-09-02
 United Kingdom hCoV-19/England/201690346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8016T C14408T C21575T A23403G GGG28881AAC TGA29401- GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527337
 2020-04-16 2020-09-03
 United Kingdom hCoV-19/England/20166003104/2020
 ATTA1- C241T C3037T C8290T C14408T A23403G GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_527728
 2020-04-16 2020-09-04
 United States hCoV-19/USA/MN-CDC-6551/2020
 C241T C539T C1059T C3037T C14408T A23403G G25563T G26209T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527729
 2020-04-16 2020-09-04
 United States hCoV-19/USA/MN-CDC-6555/2020
 C241T C3037T C14408T C16830T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527787
 2020-04-16 2020-09-04
 Peru hCoV-19/Peru/ARE-INS-075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C9491T C14408T T19839C A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_527856
 2020-04-16 2020-09-05
 Brazil hCoV-19/Brazil/SP-292/2020
 ATTAAAGGTTT1- C241T C3037T A6319G C14408T A22003C A23403G C25046T G25088T T26149C GGG28881AAC G29861T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_528400
 2020-04-16 2020-09-07
 United Kingdom hCoV-19/England/20166019504/2020
 ATTAAAGGTTTA1- C241T C1912T C3037T C7200T C8290T C14408T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_528401
 2020-04-16 2020-09-07
 United Kingdom hCoV-19/England/20166067104/2020
 ATTAAAGGTTTATAC1- A2480G C2558T G3755A A4572C G11083T C14805T C21575T G21800T G22927T G26144T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_528404
 2020-04-16 2020-09-07
 United Kingdom hCoV-19/England/20172045304/2020
 ATTAAAGGTTTA1- C241T C3037T C8016T C14408T C21575T A23403G GGG28881AAC TGA29401- GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530068
 2020-04-16 2020-09-10
 Spain hCoV-19/Spain/MD-LP65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10296T C14408T T17126C A20268G A23403G C23557T C29253T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534785
 2020-04-16 2020-09-14
 United Kingdom hCoV-19/England/OXON-B29C6/2020
 C241T C1059T C3037T C6627T A11740T C14408T A23403G G25563T G29291A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_534803
 2020-04-16 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2C90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A187G C241T C3037T G9482S T9485W C9487Y C14408T A23403G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_538879
 2020-04-16 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A984B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3411T C14408T A23403G G25563T C28657T G29449T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539796
 2020-04-16 2020-09-20
 United States hCoV-19/USA/WY-WYPHL-20009305/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T A23403G G25563T A26855G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_540441 MW023391
 2020-04-16 2020-09-21
 United States SARS-CoV-2/human/USA/NC-CDC-0871/2020
 C241T C1059T C3037T C6040T T6574A C14408T A23403G G25563T C26013T ATTT27579- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_541353
 2020-04-16 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A22135G A23403G T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541682
 2020-04-16 2020-09-23
 India hCoV-19/India/MH-NIV-10418/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C5700A C14408T A23403G CGCT26351TTAC C26356G GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541873
 2020-04-16 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr78/2020
 ATT1- C241T C3037T A12755C C14408T T19839C C26681T GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_541874
 2020-04-16 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr84/2020
 A1- A2810G C15324T T20526C T21644C G25049T C29303T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_542591
 2020-04-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-1222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C21575T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542595
 2020-04-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-1229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G T24982C G25563T C27964T T28382C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542623
 2020-04-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-1273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18055A G19525T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542655
 2020-04-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-1334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14184T C14408T A23403G G25563T G29688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542709
 2020-04-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-1415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1722T C3037T C11455T C14408T A21993G A23403G G25563T G26273T C27964T G28703T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542779
 2020-04-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-1537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4113T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543957
 2020-04-16 2020-09-24
 United States hCoV-19/USA/TX-HMH-3051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T G12478A T18736C C24034T C25669T T26729C G28077C T28144C C28896G G29266T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543961
 2020-04-16 2020-09-24
 United States hCoV-19/USA/TX-HMH-3055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10997A C14408T A23403G C27145T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543962
 2020-04-16 2020-09-24
 United States hCoV-19/USA/TX-HMH-3056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C17304T A23403G C27145T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545770
 2020-04-16 2020-09-24
 United States hCoV-19/USA/TX-HMH-799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_545901
 2020-04-16 2020-09-24
 United States hCoV-19/USA/TX-HMH-888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545902
 2020-04-16 2020-09-24
 United States hCoV-19/USA/TX-HMH-889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6031T C14408T A23403G G25563T C25777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545903
 2020-04-16 2020-09-24
 United States hCoV-19/USA/TX-HMH-890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17808T C21721T A23403G G25563T T27384C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545906
 2020-04-16 2020-09-24
 United States hCoV-19/USA/TX-HMH-894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_545915
 2020-04-16 2020-09-24
 United States hCoV-19/USA/TX-HMH-914/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G C24642T T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545916
 2020-04-16 2020-09-24
 United States hCoV-19/USA/TX-HMH-915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T G7936T C8782T C8950T G12478A T18736C G21051A C24034T C25433T T26729C T26972C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545928
 2020-04-16 2020-09-24
 United States hCoV-19/USA/TX-HMH-948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546305
 2020-04-16 2020-09-24
 United States hCoV-19/USA/TX-HMH-687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_546368
 2020-04-16 2020-09-24
 United States hCoV-19/USA/TX-HMH-694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T C16915T C18788T A23403G G25563T C27964T AAA29901-

EPI_ISL_547520
 2020-04-16 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560631
 2020-04-16 2020-09-29
 France hCoV-19/France/GE8804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3619T C14408T C15324T C17550T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568562
 2020-04-16 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T A12040G C14408T A18825M A23403G GGG28881AAC G28975T G29692K TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_568933
 2020-04-16 2020-10-02
 France hCoV-19/France/IHU-0685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G C25626T C27612T G29212T AGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29797-

EPI_ISL_568935
 2020-04-16 2020-10-02
 France hCoV-19/France/IHU-0688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G C25626T C27612T G29212T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568942
 2020-04-16 2020-10-02
 France hCoV-19/France/IHU-0702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C2910T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT506903
 2020-04-16 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT628071
 2020-04-16 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S639/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT810610
 2020-04-16 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1135-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C936T C3037T T5158G C14408T A23403G C25614T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810613
 2020-04-16 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1141-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G860A C3037T C14408T A20268G T22483C A23403G G23824T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810671
 2020-04-16 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1219-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810675
 2020-04-16 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1224-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811357
 2020-04-16 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0766-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T C18713T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811361
 2020-04-16 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0773-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C920T C3037T C14408T A20268G A23403G T23449C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811475
 2020-04-16 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1022-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7279T C14408T A19540G A20268G A23403G G26834A C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873082
 2020-04-16 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00244/2020
 C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T C27964T

MT873119
 2020-04-16 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00232/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873128
 2020-04-16 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00240/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873135
 2020-04-16 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00237/2020
 C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT873261
 2020-04-16 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00234/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873286
 2020-04-16 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00231/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873295
 2020-04-16 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00243/2020
 C241T C3037T C14408T A23403G C28603T G28899T C29708A

MT873387
 2020-04-16 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00239/2020
 G105T C241T C3037T C14408T C18877T A23403G G25563T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

MT873399
 2020-04-16 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00238/2020
 C241T G1148T C3037T C14408T A23403G T26820C C28603T G28899T

MT873457
 2020-04-16 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00236/2020
 C241T C3037T C14408T A23403G T26820C C27847T C28603T G28899T

MT873469
 2020-04-16 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00241/2020
 C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T C27964T

MT921009
 2020-04-16 2020-08-25
 United States SARS-CoV-2/human/USA/UF-21/2020
 ATTAAAGGTTTA1- C241T T833C C1059T C3037T C14408T G20996T A23403G G25563T C27964T

MT967979
 2020-04-16 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6551/2020
 C241T C539T C1059T C3037T C14408T A23403G G25563T G26209T AAAAAAAAAAAAAAAAAAAAA29883-

MT967980
 2020-04-16 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6555/2020
 C241T C3037T C14408T C16830T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_426581
 2020-04-17 2020-04-17
 Czech Republic hCoV-19/Czech Republic/IAB20-006-16/2020
 ATTAAAGGTTTATACC1- C241T C3037T G3955T C14408T A23403G G25534T C27005T C27046T GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_428346
 2020-04-17 2020-04-20
 Turkey hCoV-19/Turkey/GLAB-CoV012/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T G21452T A23403G G25563T

EPI_ISL_430814
 2020-04-17 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C14408T A23403G G26416T T27299C GGG28881AAC T29148C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_433153
 2020-04-17 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1841/2020
 C241T C3037T T10168C C14408T A20268G A23403G C28854T

EPI_ISL_433154
 2020-04-17 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1842/2020
 C241T C3037T G9526T C14408T A20268G A23403G G26062T C28854T

EPI_ISL_433155
 2020-04-17 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1848/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433156
 2020-04-17 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB1897/2020
 C241T C1059T C1076T C3037T C9598T C10582T C14408T G22309A A23403G G25563T C26461T

EPI_ISL_433467
 2020-04-17 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7E2E9/2020
 C241T C3037T C13774T C14408T A23403G GGG28881AAC

EPI_ISL_433469
 2020-04-17 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7E304/2020
 C241T C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_433470
 2020-04-17 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7E313/2020
 C241T C3037T C14408T C19140T A23403G GGG28881AAC

EPI_ISL_433471
 2020-04-17 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7E322/2020
 C241T C3037T C6027T C14408T A23403G GGG28881AAC

EPI_ISL_433480
 2020-04-17 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FB47/2020
 C241T C3037T C12076T C14408T C19484T C19488T A23403G GGG28881AAC G29701T

EPI_ISL_433481
 2020-04-17 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FB56/2020
 C241T C3037T C12076T C14408T C19488T A23403G GGG28881AAC G29701T

EPI_ISL_433482
 2020-04-17 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FB65/2020
 C241T C3037T C14408T G16206T C21058T A23403G GGG28881AAC C29769T

EPI_ISL_433483
 2020-04-17 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FB74/2020
 C241T C3037T C14408T A23403G C28308T GGG28881AAC

EPI_ISL_433484
 2020-04-17 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FB83/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433485
 2020-04-17 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FB92/2020
 C241T C3037T G11222T C14408T T18083C A23403G GGG28881AAC

EPI_ISL_433486
 2020-04-17 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FBA1/2020
 C241T C3037T C14408T A23403G G29260T G29587T

EPI_ISL_434670
 2020-04-17 2020-04-30
 Sweden hCoV-19/Sweden/20-07439/2020
 C241T C1059T C3037T C10626T C14408T A23403G G24368T G25563T

EPI_ISL_436609 MT706423
 2020-04-17 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3692T A4838G C7420T C14937T C20148T C25916T C26907G G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437301
 2020-04-17 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG15/2020
 C241T T3455C G11093A C14408T A23403G A26530G G27861T G29737T

EPI_ISL_437302
 2020-04-17 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG16/2020
 C241T C1457T C1594T C2306T C11109T C14408T A23403G G25563T C29743T

EPI_ISL_437303
 2020-04-17 2020-05-08
 Austria hCoV-19/Austria/Graz-MUG17/2020
 G11083T A11822G C14805T T17247C C20719T G26144T

EPI_ISL_437352
 2020-04-17 2020-05-08
 Democratic Republic of the Congo hCoV-19/DRC/2904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11083T C14408T C15324T A23403G G25726T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_437386
 2020-04-17 2020-05-08
 United States hCoV-19/USA/MN-MDH-666/2020
 ATTA1- C8782T G14316T C17747T A17858G C18060T A24694T C27881T T28144C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_437531
 2020-04-17 2020-05-11
 United States hCoV-19/USA/OR-OHSU-0051/2020
 C8782T C15240T C17747T A17858G C18060T T19215C C20178T C21774T T25556G T28144C

EPI_ISL_437780 MT482127
 2020-04-17 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0141/2020
 AT1- C241T C3037T C14408T C15324T A21137G A23403G C23635T

EPI_ISL_437781 MT482128
 2020-04-17 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0142/2020
 ATTAAAGGTT1- C241T C1059T C3037T C4230A C14408T A23403G C25318T G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_437782 MT482129
 2020-04-17 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0144/2020
 AT1- C241T C3037T C7600T C14408T C15324T A23403G C29870M

EPI_ISL_437784 MT482131
 2020-04-17 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T C15615T A23403G G25563T C25688A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_437785 MT482132
 2020-04-17 2020-05-11
 United States SARS-CoV-2/human/USA/VA-DCLS-0152/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T C25688A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_438184
 2020-04-17 2020-05-12
 United States hCoV-19/USA/WA-S631/2020
 G1401A C8782T C17747T A17858G C18060T A19308G T28144C

EPI_ISL_438185
 2020-04-17 2020-05-12
 United States hCoV-19/USA/WA-S632/2020
 G354A C2070T C8782T C17747T A17858G C18060T A26566G T27384C T28144C

EPI_ISL_438186
 2020-04-17 2020-05-12
 United States hCoV-19/USA/WA-S633/2020
 C241T C1059T C3037T C9811T C12880T C14408T A23403G G25563T G29553A

EPI_ISL_438187
 2020-04-17 2020-05-12
 United States hCoV-19/USA/WA-S634/2020
 C241T C1059T C3037T A12148T C13536T C14408T A23403G G25563T G29553A

EPI_ISL_438188
 2020-04-17 2020-05-12
 United States hCoV-19/USA/WA-S635/2020
 C8782T C17747T A17858G C18060T T28144C

EPI_ISL_438189
 2020-04-17 2020-05-12
 United States hCoV-19/USA/WA-S636/2020
 C241T C1059T C3037T C9474T C14408T C21635T A23403G G25563T G29553A

EPI_ISL_438190
 2020-04-17 2020-05-12
 United States hCoV-19/USA/WA-S637/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_438191
 2020-04-17 2020-05-12
 United States hCoV-19/USA/WA-S638/2020
 C241T G246T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_438196
 2020-04-17 2020-05-12
 United States hCoV-19/USA/WA-S643/2020
 C241T C3037T A5538T C14408T G16813A A23403G T25783C GGG28881AAC

EPI_ISL_438197
 2020-04-17 2020-05-12
 United States hCoV-19/USA/WA-S644/2020
 C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T

EPI_ISL_438198
 2020-04-17 2020-05-12
 United States hCoV-19/USA/WA-S645/2020
 C241T C1059T C3037T C9811T C12880T C14408T A23403G G25563T G29553A

EPI_ISL_439150
 2020-04-17 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB1992/2020
 C241T C3037T C5724T C14408T A20268G A23403G C28854T

EPI_ISL_439160
 2020-04-17 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2125/2020
 C241T C3037T C14408T A23403G G26615T C27765T GGG28881AAC

EPI_ISL_439855
 2020-04-17 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9A1AE/2020
 C241T C2940T C3037T C5944T C14408T A23403G

EPI_ISL_439857
 2020-04-17 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9A1CC/2020
 C241T C3037T C6578T G11083T C14408T G19677T A23403G GGG28881AAC

EPI_ISL_440854
 2020-04-17 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9A2C9/2020
 C241T C3037T T3873C G10097A T13216G C14408T A23403G C23731T TGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTA27555- GGG28881AAC C29366T

EPI_ISL_442487
 2020-04-17 2020-05-12
 United Kingdom hCoV-19/England/SHEF-D12C6/2020
 ATG1605- A1904G C8090T C10789T A12796C C28609T C28657T

EPI_ISL_443441
 2020-04-17 2020-05-12
 United Kingdom hCoV-19/England/CAMB-1AA4ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4124R C14408T C17999Y A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_443649
 2020-04-17 2020-05-12
 United Kingdom hCoV-19/England/CAMB-1AA526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T C21614Y A23403G G24197T T25202K G25563T C26735T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_443663
 2020-04-17 2020-05-12
 United Kingdom hCoV-19/England/CAMB-1AA368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_444239
 2020-04-17 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5BC7/2020
 C241T C1059T C3037T C14408T C18171T A23403G G24368T G25563T C26456T

EPI_ISL_444436
 2020-04-17 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80E68/2020
 C241T C3037T C13730T C14408T A23403G G25429T

EPI_ISL_444438
 2020-04-17 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80E86/2020
 C241T C313T C3037T C14408T C20428T A23403G GGG28881AAC

EPI_ISL_444440
 2020-04-17 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80EA4/2020
 C241T C3037T G7017A C14408T C16289T A23403G C23447G G25429T G27915A

EPI_ISL_444441
 2020-04-17 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80EB3/2020
 C241T C3037T C14408T C17999T CG21304AA C21575T A23403G GGG28881AAC

EPI_ISL_444442
 2020-04-17 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80EC2/2020
 C241T C313T T1177C C3037T C3593T C14408T A23403G G28086T GGG28881AAC

EPI_ISL_444443
 2020-04-17 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80ED1/2020
 C241T C1170T C3037T C11379T C14408T A23403G GGG28881AAC

EPI_ISL_447138
 2020-04-17 2020-05-16
 Belgium hCoV-19/Belgium/ULG-10146/2020
 G1440A G2891A C26340T

EPI_ISL_447139
 2020-04-17 2020-05-16
 Belgium hCoV-19/Belgium/ULG-10169/2020
 G1440A G2891A G25538A C26340T TTATTG27698-

EPI_ISL_447460
 2020-04-17 2020-05-17
 Israel hCoV-19/Israel/130710414/2020
 C241T C2416T C3037T C14408T A23403G G25563T G25855T AAAAAAAAAAAA29892-

EPI_ISL_447461
 2020-04-17 2020-05-17
 Israel hCoV-19/Israel/130710390/2020
 C241T C3037T C14408T A23403G G28883C AAAAAAAAAAAA29892-

EPI_ISL_448189
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G C25989T GAT27382CTC G28845T GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_448225
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/NORW-E86FD/2020
 AT1- C241T C3037T C12915T C14408T A20268G A23403G

EPI_ISL_448836
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/SHEF-C1D22/2020
 C241T C3037T C5777T C14408T T19839C T22207C A23403G C26681T GGG28881AAC

EPI_ISL_448841
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/SHEF-C2F58/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_448869
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/SHEF-C8DD0/2020
 C241T C3037T C14408T A23403G C27434T GGG28881AAC

EPI_ISL_448887
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/SHEF-CE1DE/2020
 C1457T A2480G C2558T C4573T G11083T C14805T G26144T C26340T

EPI_ISL_448903
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/SHEF-D04D0/2020
 C241T C1059T C3037T C14408T A14788G C16260T A23403G G24368T G25563T

EPI_ISL_449156
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/NORW-E84D5/2020
 C241T A2775G C2940T C3037T C14408T C21648T A23403G C29870H

EPI_ISL_449157
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/NORW-E850F/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC C29870V

EPI_ISL_449160
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C9491T G9649R C14408T A23403G C25728T GGG28881AAC

EPI_ISL_449167
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/NORW-E862A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_449168
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8639/2020
 ATT1- C241T C3037T T3578C G3582A C14408T C16111T A23403G A24232G G25429T

EPI_ISL_449170
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8666/2020
 C241T C3037T C12915T C14408T A20268G A23403G

EPI_ISL_449718
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/LOND-D574B/2020
 C241T C3037T C8078T C9979T C14408T A23403G GGG28881AAC

EPI_ISL_449719
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/LOND-D5778/2020
 A2480G C2558T T9743C G11083T C14805T G19947T G26144T

EPI_ISL_449720
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/LOND-D5796/2020
 C241T C2023T C3037T A10948G C14408T A23403G T27428C C27542T GGG28881AAC C28961T

EPI_ISL_449721
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/LOND-D57A5/2020
 C241T C3037T C14408T G17679T A19543C A23403G GGG28881AAC

EPI_ISL_449722
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/LOND-D57B4/2020
 C241T C3037T A10948G C14408T A23403G C27542T C28087T GGG28881AAC C29642T

EPI_ISL_449723
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/LOND-D57C3/2020
 C241T C1059T C1437T C3037T T13006C C14408T G21776A A23403G G25563T C25688T A25864G

EPI_ISL_449724
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/LOND-D57E1/2020
 C241T C3037T T9412C C14408T A23403G

EPI_ISL_449725
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/LOND-D57F0/2020
 C241T C3037T C14408T C19170T G19509A A23403G G28086T GGG28881AAC

EPI_ISL_449726
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/LOND-D580C/2020
 C241T C3037T C14408T A19543C A23403G C25680T GGG28881AAC

EPI_ISL_449727
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/LOND-D582A/2020
 C241T C3037T C14408T A23403G GGG28881AAC T29623C

EPI_ISL_449728
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/LOND-D5839/2020
 C241T C313T C3037T C14408T G18826T A23403G GGG28881AAC

EPI_ISL_449729
 2020-04-17 2020-05-19
 United Kingdom hCoV-19/England/LOND-D5848/2020
 C241T C3037T C14408T C16049T A23403G G27281T GGG28881AAC

EPI_ISL_449984 MT641640
 2020-04-17 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S814/2020
 C3311A C8782T G17671T C17747T A17858G C18060T T28144C

EPI_ISL_449985 MT641639
 2020-04-17 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S815/2020
 C241T C364T C1059T C3037T C14408T C22550T A23403G G25563T G29553A

EPI_ISL_449986 MT641550
 2020-04-17 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S816/2020
 C241T C364T C1059T C3037T C14408T A23403G G25563T G29553A

EPI_ISL_449987 MT641505
 2020-04-17 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S817/2020
 C241T C1059T C3037T C14408T A16839G A23403G G25563T G29553A A29700G

EPI_ISL_449988 MT641644
 2020-04-17 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S818/2020
 C241T C364T C1059T C3037T C14408T C22550T A23403G G25563T G29553A

EPI_ISL_449994 MT641511
 2020-04-17 2020-05-19
 United States SARS-CoV-2/human/USA/WA-S824/2020
 G1401A A7857G C8782T T13438C C15960T C17747T A17858G C18060T T28144C C29659T

EPI_ISL_450709
 2020-04-17 2020-05-22
 United States hCoV-19/USA/IL-UW-355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7081T C10319T T12037C C14408T T16047C A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450716 MT506901
 2020-04-17 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3994T G12052T C14408T C15324T G19414T A23403G C24503T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450717
 2020-04-17 2020-05-22
 United States hCoV-19/USA/IL-UW-363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_452822 MT558673
 2020-04-17 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C11916T C13252T C14408T A23403G C23604T G25563T C29358T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_453070
 2020-04-17 2020-05-27
 United Kingdom hCoV-19/Scotland/CVR2687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C601Y C3037T C14408T C15324T C18904T A23403G G25606T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_453108
 2020-04-17 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB4113/2020
 C241T C3037T C10798A C13862T C14408T A23403G G24821T G28460T C28836T

EPI_ISL_453460
 2020-04-17 2020-05-27
 United Kingdom hCoV-19/England/LOND-D570F/2020
 C241T C3037T A11537G C14408T C21575T A23403G

EPI_ISL_453461
 2020-04-17 2020-05-27
 United Kingdom hCoV-19/England/LOND-D5769/2020
 C241T C3037T C14408T C17138A A23403G C24642T GGG28881AAC

EPI_ISL_453462
 2020-04-17 2020-05-27
 United Kingdom hCoV-19/England/LOND-D5787/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_454178
 2020-04-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T A1103G C3037T C14408T A23403G GGG28881AAC ACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29731-

EPI_ISL_454183
 2020-04-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1103G C3037T A12180G C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454184
 2020-04-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1103G C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454185
 2020-04-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1103G C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454186
 2020-04-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1103G C3037T C7594T G9095T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454188
 2020-04-17 2020-05-28
 Portugal hCoV-19/Portugal/PT0464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1103G C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454643 MT532438
 2020-04-17 2020-05-28
 United States SARS-CoV-2/human/USA/VI-CDC-4022/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_454730 MT536976
 2020-04-17 2020-05-28
 United States SARS-CoV-2/Human/USA/UT-02024/2020
 C241T C1059T C3037T C4878T C14408T A22525G A23403G G25563T C27964T C29272T

EPI_ISL_454731 MT536977
 2020-04-17 2020-05-28
 United States SARS-CoV-2/Human/USA/UT-02025/2020
 C241T C1059T C3037T G6419T C14408T A23403G G25563T C27964T G28895T

EPI_ISL_456108
 2020-04-17 2020-06-01
 United States hCoV-19/USA/NY-NYUMC835/2020
 C241T C1059T C3037T C14408T C21552T A23403G G25563T

EPI_ISL_456923
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4152/2020
 C241T C3037T G6461T C14408T C18261T A20268G A23403G G27987T C28854T

EPI_ISL_457056
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/EXET-1353F9/2020
 C241T C3037T C5005T C10156T C14408T A23403G GGG28881AAC

EPI_ISL_457064
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/EXET-13548D/2020
 C241T C3037T C9603T C14408T C16887T A20268G G21372C C22295T A23403G C25318T G29734C

EPI_ISL_457083
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/EXET-135687/2020
 C241T C3037T C5005T C10156T C14408T A23403G GGG28881AAC

EPI_ISL_457094
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/EXET-135757/2020
 C241T C3037T C5005T C10156T C14408T A23403G GGG28881AAC

EPI_ISL_457095
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/EXET-135766/2020
 C241T C1185T A2730G C3037T C14408T C18029T A23403G GGG28881AAC

EPI_ISL_457104
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/EXET-135827/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_457187
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/EXET-135FD7/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457188
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/EXET-135FE6/2020
 C241T ACGGCGCCGATC672- C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457192
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/EXET-13606A/2020
 C241T C3037T C5005T C10156T C14408T T18906C A23403G GGG28881AAC

EPI_ISL_457195
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/EXET-1360B5/2020
 C241T C3037T C6903T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457270
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5884/2020
 C241T C3037T G11534A C14408T A23403G GGG28881AAC

EPI_ISL_457272
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D58B1/2020
 C241T C3037T A11537G C14408T C21575T A23403G

EPI_ISL_457273
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D58C0/2020
 C241T C3037T C14408T G18040T A23403G GGG28881AAC

EPI_ISL_457274
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D58DF/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457275
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D58EE/2020
 C241T C3037T C14408T A23403G G23642A GGG28881AAC

EPI_ISL_457277
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5909/2020
 C241T C475T C3037T C4002T G10097A C13536T C14408T C17999T G22344T A23403G C23731T GGG28881AAC

EPI_ISL_457278
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5918/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457284
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5990/2020
 C241T T1745G G1914A C3037T C9979T C14408T A23403G GGG28881AAC

EPI_ISL_457285
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D59AF/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457286
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D59BE/2020
 C241T C1059T C3037T C14408T G17149A C20148T A23403G G24368T G25563T

EPI_ISL_457287
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D59CD/2020
 C241T C3037T C14408T G21255T A23403G GGG28881AAC

EPI_ISL_457288
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D59EB/2020
 C241T C3037T A10948G G11596T C14408T A23403G G26754A G26774T C27542T A28837G GGG28881AAC

EPI_ISL_457289
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D59FA/2020
 C241T C3037T T10692C C14408T A23403G GGG28881AAC

EPI_ISL_457290
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5A06/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C28957T

EPI_ISL_457291
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5A15/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C28957T

EPI_ISL_457292
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5A33/2020
 C241T C3037T A3234G T4946G C14408T A23403G GGG28881AAC C29445T

EPI_ISL_457294
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5A60/2020
 G219T C241T C3037T C14408T A23403G C27389T GGG28881AAC

EPI_ISL_457296
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5A9D/2020
 C241T C1059T A1904G C3037T C14408T A23403G G24368T G25563T C27769T

EPI_ISL_457297
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5ACA/2020
 C241T C475T C3037T C14408T A20268G A23403G G24941T

EPI_ISL_457301
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5B21/2020
 C241T C3037T G13617T C14408T C19160T C21742T A23403G GGG28881AAC

EPI_ISL_457661
 2020-04-17 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CDC29/2020
 C241T C3037T C14408T C16101T A18616G A23403G GGG28881AAC

EPI_ISL_460659
 2020-04-17 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T C17762T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460831
 2020-04-17 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C14408T A23403G A24862G A27674T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461070
 2020-04-17 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A19540C G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461135
 2020-04-17 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13356T C14408T T19839C A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461136
 2020-04-17 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G155T C241T C3037T C14408T T19839C A23403G T26146C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461321
 2020-04-17 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461323
 2020-04-17 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461347
 2020-04-17 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462007
 2020-04-17 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C2D30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1190T C3037T C14408T A23403G G25249T GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462041
 2020-04-17 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C98DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462072
 2020-04-17 2020-06-06
 United Kingdom hCoV-19/England/SHEF-D04EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T A23403G G24368T G25563T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462074
 2020-04-17 2020-06-06
 United Kingdom hCoV-19/England/SHEF-D086B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T T16224C C17977T A23403G GGG28881AAC G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462079
 2020-04-17 2020-06-06
 United Kingdom hCoV-19/England/SHEF-D16E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462397
 2020-04-17 2020-06-08
 Singapore hCoV-19/Singapore/279/2020
 C6310A C6312A G11083T C13730T C19524T C21597T C23185T C23929T G25217T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462707 MT584985
 2020-04-17 2020-06-08
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20625/2020
 C241T C1059T G2828C C3037T C5850T A12293G C14408T A23403G G25563T

EPI_ISL_463372 MT642254
 2020-04-17 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S882/2020
 AT1- C241T C1059T C3037T G13759A C14408T A23403G G25563T C27005T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_463373 MT642287
 2020-04-17 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S883/2020
 AT1- C241T C1059T C3037T T9976C C14408T A23403G G25563T C27005T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463374 MT642327
 2020-04-17 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S884/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T C27005T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463376 MT642229
 2020-04-17 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S886/2020
 AT1- C241T C1059T C3037T C14408T A23403G C24034T G25563T C27005T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_463377 MT642355
 2020-04-17 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S887/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T C27005T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463747
 2020-04-17 2020-06-10
 Cyprus hCoV-19/Cyprus/007/2020
 A187G C241T C1201T C3037T C4596T C14408T C21614T A23403G G25726K AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_463995
 2020-04-17 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0078/2020
 C241T C313T C1779T C3037T A3709G C14408T C14724T A23403G GGG28881AAC G29781T

EPI_ISL_465168
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20169001804/2020
 C241T C3037T C3373A C6354T C9344T C11195T C14408T G17140T A23403G GGG28881AAC

EPI_ISL_465169
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20169002104/2020
 C241T C3037T C14408T A23403G G24872A GGG28881AAC A29871C

EPI_ISL_465170
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20169002204/2020
 C241T C3037T G6901K C14408T A23403G G24872A GGG28881AAC

EPI_ISL_465173
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20169003304/2020
 C241T C3037T C14408T C22120M A23403G GGG28881AAC

EPI_ISL_465174
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20169003404/2020
 C241T C3037T C14408T G20056K A23403G GGG28881AAC

EPI_ISL_465184
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20169005804/2020
 C241T C2416T C2716T C3037T G6802S G12662A C14408T C14786T G20578T T21784C A23403G G25563T G27996T

EPI_ISL_465186
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20169006104/2020
 C241T C3037T C7488A C14408T A23403G GGG28881AAC

EPI_ISL_465199
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20169015304/2020
 A2480G C2558T A6464R G11083T C13487Y C14805T G16636K C20823Y G26144T

EPI_ISL_465202
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20169018304/2020
 A231G C241T G1883K A2480R C2558Y C3037Y G8702K G10097A G11083K C14408T C15017T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_465206
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20169019704/2020
 C241T C1059T C3037T G9595A C14408T A23403G G24368T G25563T

EPI_ISL_465211
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20169021104/2020
 C241T C3037T T7009A C14408T G16396A A23403G

EPI_ISL_465213
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20169022304/2020
 C241T C3037T C14408T A19601M A23403G C25515Y T26551Y GGG28881AAC

EPI_ISL_465273
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20170030604/2020
 G1397A A2480G C2558T G3403T T8582Y T11075Y G11335K C13261Y C14805T C15017Y C17104Y C17135Y G20632S C20698Y G25337S G26144T

EPI_ISL_466598
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20168005004/2020
 A231G C241T C3037T G10097A G11083K C14408T C15017T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_466622
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20168042704/2020
 C36M C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_466623
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20169000204/2020
 C241T C3037T C14408T G15372T C23086T A23403G A27237G GGG28881AAC

EPI_ISL_466625
 2020-04-17 2020-06-11
 United Kingdom hCoV-19/England/20169000804/2020
 C241T C3037T C3373A C4246T C11195T A12820G C14408T G15649R G17667T A23403G C25207T G26383T GGG28881AAC

EPI_ISL_467348
 2020-04-17 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2195/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_467349
 2020-04-17 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2197/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C2650T C3037T C3177T C7125T C10156T C12116T C14408T C20117T A23403G C25613T T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467350
 2020-04-17 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12672T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467351
 2020-04-17 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2233/2020
 AT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_467783 MT680218
 2020-04-17 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T ATAGTT6510- C14408T A23403G G25563T G26233T

EPI_ISL_468071
 2020-04-17 2020-06-16
 Bangladesh hCoV-19/Bangladesh/CHRF_0003/2020
 ATTA1- C241T A1163T G1247R C3037T A3625W T6353Y G7936C A8821R T10129Y A10451R T13422Y T13542K C14408T T14556K G14563R T15771W T16437K T18330Y A20630R C20762T T22270Y A23403R T24701W A25201W A25806R A27690M C28153Y GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_468081
 2020-04-17 2020-06-16
 United States hCoV-19/USA/WA-OHSU-0032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C19604T A23403G G25563T C26907T

EPI_ISL_468082
 2020-04-17 2020-06-16
 United States hCoV-19/USA/WA-OHSU-0034/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26907T

EPI_ISL_468083
 2020-04-17 2020-06-16
 United States hCoV-19/USA/WA-OHSU-0035/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26907T

EPI_ISL_468084
 2020-04-17 2020-06-16
 United States hCoV-19/USA/WA-OHSU-0036/2020
 C241T C1059T C3037T C12880T C14408T T18700A A23403G G25563T G29553A

EPI_ISL_468203 LR824130 LR860703
 2020-04-17 2020-06-16
 Switzerland 120002
 C241T C3037T A5257W G6877T A10108G A10640G C14408T C15324T T20267Y T20285W A20382W A20418R T21198Y T21543Y G21608K C21621Y T21628Y C21636Y T22435Y A23403G G27561K T27565Y T27652W

EPI_ISL_468546 MT628269
 2020-04-17 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1617/2020
 C4776T C8782T C17747Y A17858G C18060T G28086K T28144C AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_468593 MT631785
 2020-04-17 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C379A G803S CC1059TY C3037T AC3652WY C9360Y C10386Y T11077Y C13170Y C14408T C15619Y C18541H G21701K C22224T A23403G G25563T G28221K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_468721 MT620770
 2020-04-17 2020-06-15
 United States SARS-CoV-2/human/USA/UF-15/2020
 ATTAAAGGTTTA1- C241T C601T C2594A C3037T G5617A C8389T G9431A C14408T A23403G G25563T G27915A AAAAAAAAA29895-

EPI_ISL_469082
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/328/2020
 C6310A C6312A G11083T C13730T C16362T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469083
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/329/2020
 C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469084
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/330/2020
 C6310A C6312A G11083T C13730T C19524T C21597T C23185T C23929T G25217T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469085
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/331/2020
 C6310A C6312A A8501R G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469086
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/332/2020
 C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469087
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/333/2020
 C6310A C6312A G11083T C13730T C19524T C21597T C23185T C23929T G25217T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469088
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/334/2020
 C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469090
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/336/2020
 C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469091
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/337/2020
 T3289C C6310A C6312A G11083T C13730T C19524T C22088Y C23929T C28311T C28758T AAAAAAAAAAAA29892-

EPI_ISL_469092
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/338/2020
 C6310A C6312A A8509G C9180T G11083T C11752Y C13730T C19524T G22201T C23929T C26882T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469093
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/339/2020
 T3289C C6310A C6312A G11083T C13730T C19524T C23929T C28311T C28758T AAAAAAAAAAAA29892-

EPI_ISL_469094
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/340/2020
 C6310A C6312A C9532Y G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469130
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/381/2020
 C6310A C6312A C8481M G11083T C13730T C16308T C19524T T22391Y C23929T C28311T G28903T AAAAAAAAAAAA29892-

EPI_ISL_469131
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/382/2020
 T3289C C6310A C6312A G11083T C13730T C19524T C23929T C28311T C28758T C29614T AAAAAAAAAAAA29892-

EPI_ISL_469134
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/385/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T G29290R C29509Y AAAAAAAAAAAA29892-

EPI_ISL_469135
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/386/2020
 C6310A C6312A C7600T A9052R G11083T C13730T C19524T C23929T A25590W C28311T AAAAAAAAAAAA29892-

EPI_ISL_469136
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/387/2020
 C6312A C8139T G11083T C13730T G18756R C23929T G25769A C28311T AAAAAAAAAAAA29892-

EPI_ISL_469137
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/388/2020
 C6310A C6312A G11083T C12488T C13730T C19524T C23185T C23929T G25785T G28089A C28311T AAAAAAAAAAAA29892-

EPI_ISL_469138
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/389/2020
 C1060T C6310A C6312A G11083T C13730T C19524T T23030C C23929T T26731C C28311T AAAAAAAAAAAA29892-

EPI_ISL_469140
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/391/2020
 C6312A C8139T G11083T C13730T G18756R C23929T G25769A C28311T AAAAAAAAAAAA29892-

EPI_ISL_469141
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/392/2020
 C4752T C6310A C6312A G11083T T11290W C13730T C19524T T19605K T22324Y C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469142
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/393/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469144
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/395/2020
 A3445G C6310A C6312A G11083T T12994C C13730T T17638A C19448Y C19524T G21157A C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469145
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/396/2020
 C6312A C8139T G11083T C13730T C23929T G25769A C28311T AAAAAAAAAAAA29892-

EPI_ISL_469148
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/399/2020
 C1385T C6312A C8139T G11083T C13730T C23929T G25769A C28311T AAAAAAAAAAAA29892-

EPI_ISL_469149
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/400/2020
 C6310A C6312A G11083T C13730T C18683Y C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469150
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/401/2020
 C6310A C6312A C7860T G11083T C13730T C19524T A20763R C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469151
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/402/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T G28922T AAAAAAAAAAAA29892-

EPI_ISL_469152
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/403/2020
 T3289C C6310A C6312A G11083T C13730T C14220T C19524T C23929T C28311T C28758T AAAAAAAAAAAA29892-

EPI_ISL_469153
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/404/2020
 C6310A C6312A G11083T C13730T T17619C C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469154
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/405/2020
 C241T C3037T C8730T C13730T C14408T A23403G G25429T C27416A AAAAAAAAAAAA29892-

EPI_ISL_469155
 2020-04-17 2020-06-17
 Singapore hCoV-19/Singapore/406/2020
 C6310A C6312A C7860T G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469544
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127C4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C3695T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469562
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127C3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CG241TT C3037T G11221T T12826G C14408T C19170T G19509A A23403G C26885Y G28077T GGG28881AAC C29606T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469582
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127C95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23014G A23403G GGG28881AAC C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469592
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127D29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G28851T CCACGCGGAGTACGATCGAGTGT29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469630
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127D38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T C3037T C14408T A23403G C25692T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469639
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127C1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G7360A C9344T C14408T G21600T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469654
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127E62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C14408T C22000T A23403G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469661
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127AF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A17148G C19255T C22264T A23403G GGG28881AAC A29147C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469668
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127D65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G10096A C14408T G18040K A23403G G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469676
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1284E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1426T A2480G C2558T G11083T G14710T C14805T C21846T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469682
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127E80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469687
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127E53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C14408T A23403G G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469691
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127BA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C25521T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469700
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127C68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T C28000Y G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469712
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127C2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469720
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127BD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6818M C9207Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469724
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127A40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2659T C3037T C14408T C17249T G17722T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469731
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1285E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6706T C14408T T19839C A23403G G25552T G25563K A26332G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469737
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127A6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T C28087T C28687T GGG28881AAC T29633C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469746
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127E44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G3638K G11417K C14408T A23403G G25563T G28808T G29434C G29705T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469763
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127D56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1942K C3037T G10097A C14408T A23403G C23731T G27260K G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469766
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1279F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5629A C14408T T19839C A23403G G25552T C25714T GGG28881AAC C29061T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469774
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127BB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469781
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127C77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469782
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127D47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14322Y C14408T C17249T G17722T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469802
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127B2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469872
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-1025FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23114T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470311
 2020-04-17 2020-06-18
 United Kingdom hCoV-19/England/CAMB-1AA720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G271T C3037T C14408T G22346T A23403G G27261S GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471172
 2020-04-17 2020-06-19
 Norway hCoV-19/Norway/2454/2020
 ATTAAAGGTTT1- C241T C3037T C9565T G11417T C14408T G15438T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_471190
 2020-04-17 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G509A C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471191
 2020-04-17 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10790T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471192
 2020-04-17 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27573T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471267
 2020-04-17 2020-06-19
 Ecuador hCoV-19/Ecuador/USFQ-020/2020
 C241T C3037T C14408T A23403G T26512C A29903-

EPI_ISL_471268
 2020-04-17 2020-06-19
 Ecuador hCoV-19/Ecuador/USFQ-045/2020
 C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC

EPI_ISL_471852
 2020-04-17 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20831/2020
 C241T C1059T C3037T T8899C G11083K C14408T T15849Y A23403G G25563T C29774T

EPI_ISL_471853
 2020-04-17 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20832/2020
 C241T C1059T C3037T C8733T C14408T C17939T A23403G G24095T G25563T A28303T

EPI_ISL_471854
 2020-04-17 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20833/2020
 A187G C241T C3037T C14408T A23403G C25916Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_471856
 2020-04-17 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20835/2020
 C241T C1059T C1385Y C3037T C14408T A23403G G25563T C25976A T29765C

EPI_ISL_471858
 2020-04-17 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20837/2020
 T490A G922A C3177T C8782T C13255Y T18736C G21901R C24034T T26729C G28077C T28144C A29700G

EPI_ISL_472605
 2020-04-17 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15CCB5/2020
 ATTAAAGG1- C222T C241T C3037T A8065R C8964T C14408T C21780T A23403G GGG28881AAC

EPI_ISL_472957
 2020-04-17 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160647/2020
 G1440A C1911T G2891A C25669Y G28851T C29200T

EPI_ISL_473544
 2020-04-17 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2723/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_473569
 2020-04-17 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475333
 2020-04-17 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D116D/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_476134 LR824564 LR861098
 2020-04-17 2020-06-25
 Switzerland 140092
 C241T C3037T A5257W C9166T G13617K C14408T C15324T C20759Y C22347S T22516W A23403G G29734K T29748Y G29862S G29864R

EPI_ISL_477989
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2509T C3037T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477990
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16741T A20268G A23403G G25305C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477993
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477994
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477996
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6673C C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478006
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3689A T11660A C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478009
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12459T C14408T C16289T G18985T A23403G C23410T G25429T C27223Y C29247T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478012
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C26447T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478013
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T224C ATG1605- G6404T T10190G C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478015
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478016
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25183A T25222C G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478025
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C12933T C13862T C14408T C15017T C18928T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478409
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/LOND-D5954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T C25688T -27373ACATTAGAGGG CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_478725
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/NOTT-112091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G26746T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478827
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFDB1/2020
 C241T C3037T C14408T T18398C A23403G G24781T A26986C GGG28881AAC C29837T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_478830
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFE54/2020
 C241T C3037T C10440T C14408T C19488T A23403G G28329A GGG28881AAC

EPI_ISL_478834
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFEBE/2020
 C241T C1059T C3037T G5554T T7302C C7764T C14408T G22141A A23403G G25563T C28932T C29067T

EPI_ISL_478835
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFEDC/2020
 C241T C3037T C14408T A20796G A23403G G24038T GGG28881AAC

EPI_ISL_478836
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFF15/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_478838
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFF51/2020
 C241T C3037T C14408T T19839C A23403G G25906T C26681T GGG28881AAC T29417C

EPI_ISL_478839
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFF7F/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC A29898M AA29902-

EPI_ISL_478891
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B060D/2020
 ATTAAA1- C241T C3037T C14408T A23403G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_478919
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0904/2020
 ATTAAA1- C241T C3037T C14408T A23403G G23909A G25273T GGG28881AAC A29500C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_478932
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0A89/2020
 C241T C3037T A6393C G11801A C14408T T18831C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_478940
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0B95/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T G28628C GGG28881AAC AAAAAAAAA29895-

EPI_ISL_478943
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0BD1/2020
 C241T C3037T C14408T C17410T G19735T C20031A A20232G A23403G C27046T GGG28881AAC AAAAAA29898-

EPI_ISL_478945
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0BFF/2020
 A1- A5W C28M C241T C3037T C14408T T19808C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_478952
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0CB0/2020
 C241T C3037T G11801A C14408T T19839C A23403G G25552T GGG28881AAC

EPI_ISL_478954
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0CDE/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_478956
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0CFC/2020
 C92T C241T C3037T C7765T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_478959
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0D35/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_478976
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0EF6/2020
 C241T C3037T C13424T C14408T A23403G A28779G GGG28881AAC AAAAAAA29897-

EPI_ISL_478999
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1165/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC

EPI_ISL_479037
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B16DF/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_479045
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1790/2020
 C241T C3037T C14408T T18831C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_479124
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2191/2020
 G7743T G9623T G11083T C14267T C14805T T17247C G20756T A22115G G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_479131
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2252/2020
 C241T C3037T C8251T C14408T C20031A A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_479160
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B25FF/2020
 C241T C3037T A6393C G11801A C14408T T18831C A23403G GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_479166
 2020-04-17 2020-06-30
 United Kingdom hCoV-19/England/OXON-B26B0/2020
 C241T T1537C C3037T G10097A C14408T G22661T A23403G C23731T G28580T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_479577
 2020-04-17 2020-06-30
 Singapore hCoV-19/Singapore/499/2020
 A223R C6310A C6312A T8497Y G11083T C13730T C14571T G17592T C19524T C23625Y C23929T T27588A C28311T AAAAAAAAAAAA29892-

EPI_ISL_479773
 2020-04-17 2020-07-01
 United States hCoV-19/USA/FL-Miami-06_UMTL-A81P/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C673T G1580A C3037T T4125C C14408T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_479774
 2020-04-17 2020-07-01
 United States hCoV-19/USA/FL-Miami-06_UMTL-A87U/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C673T G1580A C3037T T4125C C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_479775
 2020-04-17 2020-07-01
 United States hCoV-19/USA/FL-Miami-06_UMTL-A8WJ/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C673T G1580A C3037T T4125C C14408T A23403G GGG28881AAC A29878G AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_480232
 2020-04-17 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV014/2020
 C241T C1471T G2534T C3037T C12809T C14408T A23403G GGG28881AAC

EPI_ISL_480233
 2020-04-17 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV021/2020
 C241T C3037T C14408T G21724T A23403G C23709T GGG28881AAC

EPI_ISL_481237
 2020-04-17 2020-07-02
 Senegal hCoV-19/Senegal/5766/2020
 C241T C1625T C3037T C14408T G16852T A20268G A23403G G25494T C25886T C28833T

EPI_ISL_481239
 2020-04-17 2020-07-02
 Senegal hCoV-19/Senegal/5785/2020
 C241T C1625T C3037T C14408T A20268G A23403G C24023G C25886T C28833T

EPI_ISL_481244
 2020-04-17 2020-07-02
 Ecuador hCoV-19/Ecuador/USFQ-026/2020
 C241T C3037T C3130T T3793C C14408T A23403G A26530G

EPI_ISL_481245
 2020-04-17 2020-07-02
 Ecuador hCoV-19/Ecuador/USFQ-039/2020
 C241T C3037T C14408T A23403G T26512C

EPI_ISL_481246
 2020-04-17 2020-07-02
 Ecuador hCoV-19/Ecuador/USFQ-054/2020
 C241T C3037T T3788Y G5561A C14408T C21242T A23403G GGG28881AAC

EPI_ISL_481247
 2020-04-17 2020-07-02
 Ecuador hCoV-19/Ecuador/USFQ-065/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_481248
 2020-04-17 2020-07-02
 Ecuador hCoV-19/Ecuador/USFQ-066/2020
 C241T C3037T T3788Y G5561A C14408T C21242T A23403G GGG28881AAC

EPI_ISL_481572
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A10S4/2020
 C241T C1059T C3037T C14408T G18318T G22289C A22294T A23403G G24368T A25246T G25563T G28003T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481573
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A14S4/2020
 C241T C1059T C3037T A12634G C14408T C15240T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481574
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A37S12/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C29466T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481575
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A38S4/2020
 C241T C1059T C3037T C4084T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481576
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A44S4/2020
 C241T C1059T C3037T C3425T C9565T A13653G C14408T A23403G G24368T G25563T G25775T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481577
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A46S12/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481578
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A47S12/2020
 C241T C1059T C3037T C14408T C14425A T17107A A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481579
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A54S4/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481580
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A62S12/2020
 C241T C1059T C3037T T4634C C14408T A17622G A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481581
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A63S4/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C29466T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481582
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A66S12/2020
 C241T C1059T C3037T C12923T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481583
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A69S12/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481584
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A70S12/2020
 C241T C344T C1059T C3037T C5284T C14408T T15519C A23403G G24368T G25563T C29409T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481588
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A82S13/2020
 C241T AAGTCATTT686- C1059T C3037T G11083T A12634G C14408T C18348T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481589
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A85S10/2020
 C241T AAGTCATTT686- C1059T C3037T C6786T C14408T C22432T A23403G G24368T G25563T G27731T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481590
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A87S10/2020
 C241T C2453T C3037T C14408T G22021T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481592
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A91S13/2020
 C241T C346T C1059T C3037T A12634G C14408T A23403G G24368T G25563T C27532T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481593
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A92S12/2020
 C241T C1059T C3037T C14408T T20277C A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481594
 2020-04-17 2020-07-03
 Finland hCoV-19/Finland/17A93S13/2020
 C241T C346T C1059T C3037T A12634G C14408T A23403G G24368T G25563T C27532T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481784
 2020-04-17 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CB84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083K G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481834
 2020-04-17 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CA4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G G2198T C9223T C10626T G11083T C14805T A16438R T17247C C17747T AG21892GA C23934T G26144T G29757K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481858
 2020-04-17 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CA69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7115A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481924
 2020-04-17 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CC27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A15363G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481935
 2020-04-17 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CA78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7115A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481960
 2020-04-17 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CA3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G G2198T C9223T C10626T G11083T C14805T T17247C C17747T AG21892GA C23934T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482350
 2020-04-17 2020-07-03
 United States hCoV-19/USA/OR-PROV-075/2020
 C241T C3037T C9430T T10158C C14408T G19969A A20268G A23403G C28854T

EPI_ISL_482351
 2020-04-17 2020-07-03
 United States hCoV-19/USA/OR-PROV-078/2020
 C241T C3037T C11563T C14408T C16952T C17028T C18877T A23403G G24550A G25563T

EPI_ISL_482352
 2020-04-17 2020-07-03
 United States hCoV-19/USA/OR-PROV-079/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_482353
 2020-04-17 2020-07-03
 United States hCoV-19/USA/OR-PROV-080/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_482967
 2020-04-17 2020-07-06
 United States hCoV-19/USA/MN-MDH-1246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T C26625T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483282
 2020-04-17 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0657-IPL/2020
 C241T C3037T C14408T A20268G A23403G T24076C T27212A C28854T

EPI_ISL_483458
 2020-04-17 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1004-SAN/2020
 ATTAAAGGTTTA1- C241T C3037T C9430T C14408T G18972T G19969A A20268G A23403G C26124T C28854T

EPI_ISL_483461
 2020-04-17 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1013-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C28253T

EPI_ISL_484418
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D167D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1420T ATG1605- G23311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484618
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7794G C14408T T19776C A23403G G25444T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484620
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18904T A23403G G25606T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484621
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1326T C3037T C4551T G7360A C8078G C8320T C14408T C17949T T18351C C18692T G19684T A23403G G25563T G28727T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484622
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484623
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C835Y C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484625
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1980A C3037T T11581A C12025T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484631
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T C19955T A23403G C25667T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484632
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484633
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C3037T C14408T C16289T A23403G T25222C G25429T C26060T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484634
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G351A ATG1605- G11083T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484635
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13169T C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484636
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25183A T25222C G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484637
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G1980A C3037T T11581A C12025T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484638
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A21405T A23403G C23701T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484639
 2020-04-17 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485142
 2020-04-17 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26544570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C900T C1059T C3037T C10188T C14408T A23403G T24982C G25471T G25563T T27132C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485145
 2020-04-17 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26544573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C4893T C9246T G13126A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485146
 2020-04-17 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26544574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485391
 2020-04-17 2020-07-09
 South Korea hCoV-19/South Korea/A7/2020
 ATTAAAGGTTT1- G600A A2345G T2461Y A2480G C2558T C10604T G11083T C12781T C14805T G26144T C26936T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_485889
 2020-04-17 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26544578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T G1980A C3037T C9207T C14408T G14534A C16616T A23403G G25563T TTTTAGCC27793- C27964T

EPI_ISL_486184 MT750387
 2020-04-17 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1885/2020
 ATTAAAGGTTTA1- C241T C3037T T4711C A6709G C14408T C17125T A22904M A23122R A23403G T25902W T25908W G25913S C27689Y GGG28881AAC T29867M

EPI_ISL_486186 MT750389
 2020-04-17 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C3037T C5467T C8389T C12249T C13487T C14408T A23122R A23403G G25563T T25902W T25908W G25913S

EPI_ISL_486187 MT750390
 2020-04-17 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C379A C1059T C3037T C14408T C22224T A23122R A23403G G25563T T25902W T25908W G25913S A29903-

EPI_ISL_487647
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487696
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6267T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487729
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T A11839G C14408T C16575T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487855
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T T4579A T6754C C7765T C14189T C14408T C17690T C18877T A23403G T24923C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487894
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T C16806T A23403G C23731T G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488002
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488311
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E4D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T T7642C C14408T A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489232
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-10360A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489312
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-10345B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A19708R A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489314
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489318
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-1034C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489328
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-1034A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G C26029A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489342
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-1035C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489344
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-1035EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C6145Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489348
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489354
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC G29372A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489366
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-1035B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC G29372A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489369
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9967T A10323G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489375
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3653T C6696T C7104T C9474T C11001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489377
 2020-04-17 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-10338B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T G17562K A22259R A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489737 MT757047
 2020-04-17 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0328/2020
 ATTA1- T490A C3177T T3931C A5174G C6040T C8782T G12478A C13724T T18736C C24034T A26234G T26729C G28077C T28144C C28896G A29700G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_489739 MT757049
 2020-04-17 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0330/2020
 ATT1- T490A C3177T T3931C A5174G C6040T C8782T G12478A C13724T T18736C C24034T A26234G T26729C G28077C T28144C C28896G A29700G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_489865 EPI_ISL_491061
 2020-04-17 2020-07-14
 Romania hCoV-19/Romania/ROSV_2873/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A6063G T9697C T10810G C14408T C15857T A20268G A23403G G26268T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_489866 EPI_ISL_491062
 2020-04-17 2020-07-14
 Romania hCoV-19/Romania/ROSV_2874/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T2593C C3037T C14408T A20268G A23403G C25583T CG29211GT CGGAATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGA29218T A29827T G29830T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGA29832- C29870A A29883C A29891C A29896C

EPI_ISL_489867 EPI_ISL_491063
 2020-04-17 2020-07-14
 Romania hCoV-19/Romania/ROSV_2899/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C9724T C14408T A20268G A23403G G24998C A26358G C27679T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_490571
 2020-04-17 2020-07-15
 United Kingdom hCoV-19/England/NOTT-112723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24023T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490573
 2020-04-17 2020-07-15
 United Kingdom hCoV-19/England/NOTT-112741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C5497T C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490574
 2020-04-17 2020-07-15
 United Kingdom hCoV-19/England/NOTT-112750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24023T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490575
 2020-04-17 2020-07-15
 United Kingdom hCoV-19/England/NOTT-11276F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490576
 2020-04-17 2020-07-15
 United Kingdom hCoV-19/England/NOTT-11277E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4540T C8782T T9477A C14805T C23525T C25714T G25979T C26029A C28000T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490577
 2020-04-17 2020-07-15
 United Kingdom hCoV-19/England/NOTT-11278D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T6515G T12779C C16762T G26439T C29272T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491064
 2020-04-17 2020-07-16
 Romania hCoV-19/Romania/ROSV_3019/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C4586T C14408T A20268G A23403G A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_491129
 2020-04-17 2020-07-16
 Oman hCoV-19/Oman/24618/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T G10265A C14408T C16293T G17302T A23403G G25776T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_491151
 2020-04-17 2020-07-16
 Oman hCoV-19/Oman/24774/2020
 ATTAAAGGTTTATACCTTCCCAG1- G24C C241T C2836T C3037T C14408T C16726T C18877T C22444T A23403G G25563T C26735T C28854T G29513T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860G

EPI_ISL_491516
 2020-04-17 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4551T T5161A C14408T T17126C A20268G A23403G C27603Y G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491524
 2020-04-17 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2215G C3037T A10874G C14408T A23403G G25429T G25440A C25916T T26677C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491566
 2020-04-17 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T26715K G26720R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491588
 2020-04-17 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10874G C14408T C15824Y A23403G G25429T C25916T T26677C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491591
 2020-04-17 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T25129Y C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491612
 2020-04-17 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21588T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491623
 2020-04-17 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C29253Y G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491625
 2020-04-17 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T C9598T C10582T C14408T G22309A G22894A A23403G G25563T C26461T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491692
 2020-04-17 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10874G C14408T A23403G G25429T C25916T T26677C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492034
 2020-04-17 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_2215/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TAATAGCTTCTTAGGAGAATG29848- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_492072 MT775832
 2020-04-17 2020-07-19
 Poland SARS-CoV-2/human/POL/PL_P47/2020
 ATTAAAGGTTTA1- C241T C3037T C6363T C12778T C14408T T15252C C17304T T22119C A23403G G24077T

EPI_ISL_492217
 2020-04-17 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18539CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5063A G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492266
 2020-04-17 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853AF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C14408T A23403G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492279
 2020-04-17 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853A9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8802T C14408T C20270T A23014G A23403G GGG28881AAC C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492388
 2020-04-17 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853AC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G343T ATG1605- A10317G C22458T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492841
 2020-04-17 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C1370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T C18657T A23403G G25429T GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492856
 2020-04-17 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A G3002R C3037T A11326T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492916
 2020-04-17 2020-07-20
 United Kingdom hCoV-19/England/NORT-28B0FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29778A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492918
 2020-04-17 2020-07-20
 United Kingdom hCoV-19/England/NORT-28B092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492920
 2020-04-17 2020-07-20
 United Kingdom hCoV-19/England/NORT-28B047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492922
 2020-04-17 2020-07-20
 United Kingdom hCoV-19/England/NORT-28B065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2902T C3037T C14408T C20555T A23403G A24385G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492934
 2020-04-17 2020-07-20
 United Kingdom hCoV-19/England/NORT-28B056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11755G C14408T A23403G C27046T C28754Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492937
 2020-04-17 2020-07-20
 United Kingdom hCoV-19/England/NORT-28B108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C11195T C14408T A23403G G24056A T25180C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492964
 2020-04-17 2020-07-20
 United Kingdom hCoV-19/England/NORT-28B0A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492974
 2020-04-17 2020-07-20
 United Kingdom hCoV-19/England/NORT-28B083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C14408T C14786T G17964T A19426G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493336
 2020-04-17 2020-07-21
 Mexico hCoV-19/Mexico/InDRE_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4582T C8175T C9661Y C14408T A20268G A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_493604
 2020-04-17 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112C7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C5497T C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494251
 2020-04-17 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168515/2020
 ATTAAAG1- G1148T A1515G C9223T -11075TTT G11083T C14805T T17247C T20644C C21736T G26144T AA29902-

EPI_ISL_494628
 2020-04-17 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1505/2020
 AT1- C241T C3037T C4540T G4904T G5206T A5967G G11083K C14408T A23403G C24138T C25350T G29777T

EPI_ISL_495577
 2020-04-17 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S001093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A G922A C3177T A6551G C8782T T18736C C24034T T26729C G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495588
 2020-04-17 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S001117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C20451T A23403G G25563T C28409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500834 MT911799
 2020-04-17 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C7564T C8782T C17747T A17858G C18060T T28144C G28985T

EPI_ISL_500835 MT911800
 2020-04-17 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0672/2020
 AT1- C241T C1059T C2667T C3037T C11916T C14408T C18998T A23403G G25563T G25947C G29540A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_500844 MT911809
 2020-04-17 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0682/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_500855 MT911820
 2020-04-17 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0694/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C G29195T G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_500857 MT911822
 2020-04-17 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0701/2020
 ATT1- C241T C1059T C3037T C9886T C14408T C17766G A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_510933
 2020-04-17 2020-08-07
 Portugal hCoV-19/Portugal/PT0674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1060T C3037T T6175C C14408T C21242T A23403G G26062T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511507
 2020-04-17 2020-08-08
 Portugal hCoV-19/Portugal/PT0958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G319T C3037T C5284T C12528T C14408T A16920G A23403G A26530G C27476T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_514750 MT890462
 2020-04-17 2020-08-17
 Russia SARS-CoV-2/human/RUS/20200417_10/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_515209
 2020-04-17 2020-08-18
 Canada hCoV-19/Canada/QC_AK6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515210
 2020-04-17 2020-08-18
 Canada hCoV-19/Canada/QC_AK9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515376
 2020-04-17 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0103/2020
 ATTAA1- C241T C379A C1059T C3037T C4113T CC14407TT T19026C G21123T A23403G G24236T G25563T

EPI_ISL_515378
 2020-04-17 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0105/2020
 ATTAAA1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T A27315T

EPI_ISL_515379
 2020-04-17 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0106/2020
 ATTAAAGGTTTATA1- C241T C379A C1059T C3037T C4113T CC14407TT A23403G G25563T G28487A

EPI_ISL_520669
 2020-04-17 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L2004034634/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_520670
 2020-04-17 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L2004034664/2020
 C8782T G11230T T19434C T28144C G28167A G28878A G29742A

EPI_ISL_520717
 2020-04-17 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920066831/2020
 C241T C3037T C14408T C20389T C21575T A22546G A23403G A25208G G25991T G26152T C28657T GGG28881AAC

EPI_ISL_520737
 2020-04-17 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920673013/2020
 C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_522868
 2020-04-17 2020-08-26
 Italy hCoV-19/Italy/VR-IZSVe-94-28/2020
 ATTAAAGGTT1- C241T C3037T G8575A C14408T A23403G GGG28881AAC TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_523122
 2020-04-17 2020-08-26
 Netherlands hCoV-19/Netherlands/DR-EMC-4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9165T C14284A C14408T C20148T A23403G C25276T G28077T C28674T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523160
 2020-04-17 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C14931T C21005T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523422
 2020-04-17 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A9744G C11653T T13006C C14408T A23403G G25563T C25688T T29626C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523423
 2020-04-17 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C7732T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523575
 2020-04-17 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6340A C14408T C15277T A23403G A24862G C25624T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523693
 2020-04-17 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A16438G C17977T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523961
 2020-04-17 2020-08-27
 Brazil hCoV-19/Brazil/SP-164/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G C24337T A26973G T27299C GGG28881AAC T29148C G29861T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_523993
 2020-04-17 2020-08-27
 Brazil hCoV-19/Brazil/SP-217/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C13458T C14408T T22126C A23403G G25088T GGG28881AAC T29264C C29857T T29859G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861T

EPI_ISL_524465
 2020-04-17 2020-08-28
 Brazil hCoV-19/Brazil/SP-511/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12053T C14408T C20132T A23403G G25088T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_525685
 2020-04-17 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-51085-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3317T G10265A C14408T A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_526230
 2020-04-17 2020-09-01
 Hungary hCoV-19/Hungary/MH-879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13667T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526478
 2020-04-17 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB4133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526841
 2020-04-17 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0665/2020
 ATTAAAGGTTTA1- A38R C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_527059
 2020-04-17 2020-09-03
 Australia hCoV-19/Australia/NSW2573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C5548T G10097A C12400T C13536T C14408T A23403G C23731T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527730
 2020-04-17 2020-09-04
 United States hCoV-19/USA/MN-CDC-6562/2020
 C241T C1059T C1314T C3037T C14408T A23403G G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527857
 2020-04-17 2020-09-05
 Brazil hCoV-19/Brazil/SP-293/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25C C241T C3037T G5305T C12053T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_527860
 2020-04-17 2020-09-05
 Brazil hCoV-19/Brazil/SP-283/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862TCT

EPI_ISL_529672
 2020-04-17 2020-09-10
 United Kingdom hCoV-19/England/PORT-2D38FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7267T C14408T A23403G C28473T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529673
 2020-04-17 2020-09-10
 United Kingdom hCoV-19/England/PORT-2D3A42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G C3037T T4213A C5730T C12970T C14408T G19542T A23403G G24328A C25749T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530069
 2020-04-17 2020-09-10
 Spain hCoV-19/Spain/MD-LP68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534766
 2020-04-17 2020-09-14
 United Kingdom hCoV-19/England/OXON-AFFE8/2020
 C241T C3037T A6393C G11801A C14408T T18831C A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_534767
 2020-04-17 2020-09-14
 United Kingdom hCoV-19/England/OXON-B046D/2020
 C241T C3037T C8251T C14408T C20031A A23403G C27046T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_536415
 2020-04-17 2020-09-16
 Singapore hCoV-19/Singapore/874/2020
 ATTAAAGGTTTA1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_536416
 2020-04-17 2020-09-16
 Singapore hCoV-19/Singapore/875/2020
 ATTAA1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_537470
 2020-04-17 2020-09-16
 United States hCoV-19/USA/CA-UCLA-11/2020
 A1- C8782T G16381A T17877C G20679T G25500T T28144C G28878A G29742A GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_537605
 2020-04-17 2020-09-16
 United States hCoV-19/USA/CA-UCLA-9/2020
 A1- C241T C379A C1059T C3037T A14041G C14408T C22323T A23403G G25563T C27739T C29769T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_540439 MW021513
 2020-04-17 2020-09-21
 United States SARS-CoV-2/human/USA/WV-CDC-7935/2020
 C241T C3037T C14408T C17135A T19839C A23403G C28833T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_541356
 2020-04-17 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2231/2020
 ATTAAA1TCCTTG C241T C3037T C6883T C14408T A23403G G24257T G26834T T27299C GGG28881AAC T29148C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_541875
 2020-04-17 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr90/2020
 A1- A2810G C5544T C15324T T21644C C29303T AAAAAAAAA29895-

EPI_ISL_542701
 2020-04-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-1403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T A23403G G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542702
 2020-04-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-1404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6130C C10319T C14408T C16308T C16694T A23403G G25563T A25986T C26882T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542789
 2020-04-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-1719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542790
 2020-04-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-1721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10029T C14408T A23403G G25563T C26256T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542901
 2020-04-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-1917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26464T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545919
 2020-04-17 2020-09-24
 United States hCoV-19/USA/TX-HMH-920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4657A T7185C C10319T C14408T A23403G C23589T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545920
 2020-04-17 2020-09-24
 United States hCoV-19/USA/TX-HMH-921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545921
 2020-04-17 2020-09-24
 United States hCoV-19/USA/TX-HMH-922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11750T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT506894
 2020-04-17 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7081T C10319T T12037C C14408T T16047C A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT506902
 2020-04-17 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT628037
 2020-04-17 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S634/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T A12148T C13536T C14408T A23403G G25563T G29553A ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

MT628038
 2020-04-17 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S645/2020
 AT1- C241T C1059T C3037T C9811T C12880T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628041
 2020-04-17 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S643/2020
 ATTAAAG1- C241T C3037T A5538T C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628045
 2020-04-17 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S632/2020
 ATTAAA1- G354A C2070T C8782T C17747T A17858G C18060T A26566G T27384C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628049
 2020-04-17 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S636/2020
 ATT1- C241T C1059T C3037T C9474T C14408T C21635T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628050
 2020-04-17 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S633/2020
 ATT1- C241T C1059T C3037T C9811T C12880T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628055
 2020-04-17 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S638/2020
 ATT1- C241T G246T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628059
 2020-04-17 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S644/2020
 ATTAAAGGTTT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628060
 2020-04-17 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S637/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628073
 2020-04-17 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S631/2020
 AT1- G1401A C8782T C17747T A17858G C18060T A19308G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT628081
 2020-04-17 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S635/2020
 AT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT810512
 2020-04-17 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1505-CS2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4540T G4904T G5206T A5967G G11083K C14408T A23403G C24138T C25350T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811295
 2020-04-17 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0657-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C T27212A C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811465
 2020-04-17 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1004-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C9430T C14408T G18972T G19969A A20268G A23403G C26124T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811468
 2020-04-17 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1013-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T C28253T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873100
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00287/2020
 C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T C27964T

MT873156
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00250/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T C28819A

MT873183
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00277/2020
 C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T C27964T

MT873208
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00270/2020
 C241T G805A G1149A C2416T C3037T T3282C C14408T A23403G G25563T T25870C G26233T A28370G C28717T C29585T

MT873211
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00248/2020
 G105T C241T C3037T C3264T C9811T C11454T C12400T C14408T C18877T A23403G G25563T

MT873221
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00266/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873225
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00252/2020
 G105T C241T C3037T C11454T C14408T C18877T A23403G G25563T

MT873238
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00906/2020
 ATTAAA1- G105T C241T C3037T C3393T C11758T C14408T C18877T A23403G G25563T

MT873256
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00294/2020
 AT1- C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T G25720T C27964T

MT873274
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00292/2020
 ATTAAA1- C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T C27964T

MT873275
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00265/2020
 C241T T833C C1059T C3037T T9157C C14408T C20099T A23403G G25563T C27964T

MT873279
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00264/2020
 C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T C27964T

MT873285
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00271/2020
 C241T T833C C1059T C3037T T4174C C14408T C20099T A23403G G25563T C27964T

MT873348
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00261/2020
 C241T G805A G1149A C2416T C3037T T3282C C14408T A23403G G25563T T25870C G26233T C28717T

MT873355
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00256/2020
 G105T C241T C3037T C11454T C12400T C14408T C18877T A23403G G25563T

MT873424
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00303/2020
 C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T C27964T

MT873434
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00268/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873443
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00283/2020
 ATTAAA1- C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T G26428T C27964T

MT873458
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00295/2020
 C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T C27964T

MT873501
 2020-04-17 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00299/2020
 C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT967981
 2020-04-17 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6562/2020
 C241T C1059T C1314T C3037T C14408T A23403G G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

MW001241
 2020-04-17 2020-09-14
 United States SARS-CoV-2/human/USA/222-NP-TCE/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

MW001242
 2020-04-17 2020-09-14
 United States SARS-CoV-2/human/USA/222-OP-TCE/2020/P1
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

MW001244
 2020-04-17 2020-09-14
 United States SARS-CoV-2/human/USA/223-OP-TCE/2020
 C241T C2416T C3037T T12112C G13459A C14408T G21974C A23403G C25214T G25563T G26233T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_421212
 2020-04-18 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10045/2020
 C241T C913T C3037T T4011C G4261A C14408T A23403G GGG28881AAC

EPI_ISL_421213
 2020-04-18 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10046/2020
 C241T C3037T C4780T C7728T G9856T C14408T A23403G GGG28881AAC

EPI_ISL_428936
 2020-04-18 2020-04-22
 United States hCoV-19/USA/WI-UW-260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6884T C14408T A23403G G25563T T26987C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_430815
 2020-04-18 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T C16726Y A23403G G26416T C26533T T27299C GGG28881AAC T29148C AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_430816
 2020-04-18 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C28863T G29540A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_430817
 2020-04-18 2020-04-27
 Argentina hCoV-19/Argentina/PAIS_A026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G2173A C3037T C14408T A23403G G26416T T27299C GGG28881AAC T29148C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_433162
 2020-04-18 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2011/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_433164
 2020-04-18 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2048/2020
 C241T G362A C3037T G5230T C9661T C14408T T14766C G15327T A20268G A23403G G27021C C28854T

EPI_ISL_433165
 2020-04-18 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2049/2020
 C241T C3037T A10874G C14408T A23403G G25429T G25440A T26677C G29745T

EPI_ISL_433166
 2020-04-18 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2050/2020
 C241T C3037T C14408T G15439A C22295T A23403G G25429T G25687T C28737T

EPI_ISL_433167
 2020-04-18 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2051/2020
 C241T C3037T A10874G C14408T A23403G G25429T T26677C

EPI_ISL_433168
 2020-04-18 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2052/2020
 C241T C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_433169
 2020-04-18 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2057/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_433170
 2020-04-18 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2062/2020
 C241T G1835A C3037T C6573T C14408T A23403G C25528T G27715T GGG28881AAC

EPI_ISL_433171
 2020-04-18 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2064/2020
 C8782T C17470T C26088T T26545C T28144C

EPI_ISL_433172
 2020-04-18 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2065/2020
 C8782T C17470T C26088T T26545C T28144C

EPI_ISL_433173
 2020-04-18 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2066/2020
 C241T C3037T C14408T A20268G A23403G C27925T C28854T

EPI_ISL_433192
 2020-04-18 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2094/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_433193
 2020-04-18 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2095/2020
 C241T C3037T A3911G C14408T C17825T A23403G C26028T

EPI_ISL_433197
 2020-04-18 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2099/2020
 C241T C313T C3037T T3268C C14408T G20134T A23403G GGG28881AAC

EPI_ISL_433478
 2020-04-18 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7F8E6/2020
 C1314T G11083T C14805T T17247C G26144T T27451A C29171T

EPI_ISL_435689
 2020-04-18 2020-05-05
 Singapore hCoV-19/Singapore/84/2020
 ATTA1- T5923C C6310A C6312A G11083T C12400T C13730T C19524T C23929T C24023T C28311T GGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29794-

EPI_ISL_436610 MT706424
 2020-04-18 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T809A C1059T C3037T C14408T C16017T C16616T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437532
 2020-04-18 2020-05-11
 United States hCoV-19/USA/OR-OHSU-0052/2020
 C241T T1623C C3037T C14408T G20980A A23403G

EPI_ISL_437912 MT476385
 2020-04-18 2020-05-11
 Bangladesh SARS-CoV-2/human/BGD/CHRF_0001/2020
 C241T A1163T C3037T C14408T G17019T A23403G GGG28881AAC

EPI_ISL_438158
 2020-04-18 2020-05-12
 United States hCoV-19/USA/WA-S605/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_438176
 2020-04-18 2020-05-12
 United States hCoV-19/USA/WA-S623/2020
 C241T C3037T C14408T G16813A A23403G GGG28881AAC

EPI_ISL_438177
 2020-04-18 2020-05-12
 United States hCoV-19/USA/WA-S624/2020
 C241T C3037T C14408T A23403G C27630T GGG28881AAC

EPI_ISL_438179
 2020-04-18 2020-05-12
 United States hCoV-19/USA/WA-S626/2020
 C241T C1059T C3037T C12880T C14408T C21575T A23403G G25563T C26013T G29553A

EPI_ISL_438180
 2020-04-18 2020-05-12
 United States hCoV-19/USA/WA-S627/2020
 C241T C1059T C3037T C12880T C14408T C21575T A23403G G25563T C26013T G29553A

EPI_ISL_438181
 2020-04-18 2020-05-12
 United States hCoV-19/USA/WA-S628/2020
 C241T C1059T C3037T C12880T C14408T C21575T A23403G G25563T C26013T G29553A

EPI_ISL_438182
 2020-04-18 2020-05-12
 United States hCoV-19/USA/WA-S629/2020
 C241T C1059T C3037T C12880T C14408T C21575T A23403G G25563T C26013T G29553A

EPI_ISL_438183
 2020-04-18 2020-05-12
 United States hCoV-19/USA/WA-S630/2020
 C241T C1059T C3037T C12880T C14408T C21575T A23403G G25563T C26013T G29553A

EPI_ISL_438193
 2020-04-18 2020-05-12
 United States hCoV-19/USA/WA-S640/2020
 C8782T G15406A C17010T C17747T A17858G C18060T T28144C

EPI_ISL_438194
 2020-04-18 2020-05-12
 United States hCoV-19/USA/WA-S641/2020
 C683T C1342T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_438573
 2020-04-18 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8115F/2020
 C241T C2091T C3037T C14408T G22014T A23403G G25630T GGG28881AAC

EPI_ISL_438944
 2020-04-18 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7047T C14408T A23403G C25658T G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438975
 2020-04-18 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G20134T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439861
 2020-04-18 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9A26F/2020
 C241T C3037T C10252T C14408T C14889T C21635T A23403G C28748T GGG28881AAC

EPI_ISL_440853
 2020-04-18 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9A29C/2020
 C241T C3037T G6236A C14408T A23403G GGG28881AAC

EPI_ISL_440887
 2020-04-18 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9B93C/2020
 C241T C583T C3037T C6762T C14408T C23191T A23403G C28057T T29623C

EPI_ISL_444236
 2020-04-18 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5B5E/2020
 C241T C3037T C6070T C14408T A22101T A23403G GGG28881AAC

EPI_ISL_444238
 2020-04-18 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5B9A/2020
 C241T C1059T C3037T C9561T C14408T A23403G G24368T G25563T

EPI_ISL_444241
 2020-04-18 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5CB5/2020
 C241T C3037T C14408T G19635A A23403G GGG28881AAC

EPI_ISL_444242
 2020-04-18 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5CD3/2020
 C241T C1191T C3037T C4815T C14408T C19019T A23403G GGG28881AAC C29077T

EPI_ISL_444245
 2020-04-18 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5D58/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444247
 2020-04-18 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5DA3/2020
 C241T C1627T C3037T C9073T C9534T C14408T A21137G C22687T A23403G T29680C

EPI_ISL_444248
 2020-04-18 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5DEF/2020
 C241T C3037T C9803T C14408T C19185T A20268G C22295T A23403G G28378T G29734C

EPI_ISL_444261
 2020-04-18 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5F07/2020
 C241T C3037T C6573T C9967T C14408T G19542T A23403G C25528T GGG28881AAC

EPI_ISL_444262
 2020-04-18 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5F16/2020
 C241T C2023T C3037T A10948G C11704T C14408T A23403G T27428C C27542T GGG28881AAC

EPI_ISL_444265
 2020-04-18 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5F43/2020
 C241T C1059T C3037T C14408T C18171T A23403G G24368T G25563T

EPI_ISL_444402
 2020-04-18 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7FCCC/2020
 C241T C3037T C7600T C13730T C14408T A23403G G25429T

EPI_ISL_444430
 2020-04-18 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7FEC6/2020
 A235G C241T C2940T C3037T C14408T A23403G C23937T

EPI_ISL_444435
 2020-04-18 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80E59/2020
 A2480G C2558T G11083T C14805T C17746T C19662T G26144T

EPI_ISL_444437
 2020-04-18 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80E77/2020
 C241T C1059T C3037T C14408T C16329T A23403G C23536T G25563T C25731T C29625T

EPI_ISL_447140
 2020-04-18 2020-05-16
 Belgium hCoV-19/Belgium/ULG-10152/2020
 C241T C3037T C14408T C15277T C15324T A23403G G25249T C25797T

EPI_ISL_447141
 2020-04-18 2020-05-16
 Belgium hCoV-19/Belgium/ULG-0183/2020
 A3859G G11083T C14805T T17247C C17746T G26144T A29598G

EPI_ISL_447145
 2020-04-18 2020-05-16
 Belgium hCoV-19/Belgium/ULG-10148/2020
 C241T C2113T C3037T C7765T C14408T C15928T C17690T C18877T A23403G G25563T TTTTAAAGTTTCCATTTGGAATCTTGA27264-

EPI_ISL_447147
 2020-04-18 2020-05-16
 Belgium hCoV-19/Belgium/ULG-10150/2020
 C241T TGGTCATGTTATGGT508- C1059T C3037T G4006A C14408T G16075T A23403G G25563T

EPI_ISL_447152
 2020-04-18 2020-05-16
 Belgium hCoV-19/Belgium/ULG-10156/2020
 C241T C2773T C3037T G3328T C12525T C14408T G17193T C18348T A23403G

EPI_ISL_447153
 2020-04-18 2020-05-16
 Belgium hCoV-19/Belgium/ULG-10158/2020
 C241T C2113T C3037T C4999T C7765T C14408T C17690T C18877T C19524T A23403G G25563T

EPI_ISL_448190
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T T29206G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_448223
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E86C0/2020
 C241T G2164A C3037T C14408T A23403G C24237T A24667G GGG28881AAC C29870H

EPI_ISL_448980
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6DEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G22899T A23403G GGG28881AAC C29870H

EPI_ISL_448984
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6E60/2020
 ATTA1- C241T C3037T C14408T A23403G C25728T GGG28881AAC G29702R

EPI_ISL_448985
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6E8E/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G6669K C14408T C21811Y G22992A A23403G C26270Y GGG28881AAC

EPI_ISL_448992
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6F12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C12915T C14408T A20268G A23403G

EPI_ISL_449003
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E711B/2020
 ATT1- C241T C2940T C3037T C14408T A23403G C24378T C29870Y

EPI_ISL_449005
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7139/2020
 ATTA1- C241T C3037T C9977A C13694T C14408T A23403G G25429T

EPI_ISL_449008
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7175/2020
 ATTAAAGG1- C241T C3037T C13694T C14408T A23403G T24910C G25055T G25429T

EPI_ISL_449028
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E737F/2020
 AT1- C3540T C4755T G11083T C14805T T17247C G26144T

EPI_ISL_449148
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E83F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A532G C2091T C3037T A3765G C14408T G19525T A23403G GGG28881AAC

EPI_ISL_449150
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8411/2020
 ATTAAAGGTTT1- C241T C3037T G12038R C14408T A20318R A23403G G28077T GGG28881AAC

EPI_ISL_449151
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8420/2020
 C241T C3037T G7214A C13694T C14408T A23403G G28077T GGG28881AAC

EPI_ISL_449155
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E84B7/2020
 ATTAAAGGTTTATACC1- C241T C3037T G3567A C6385T C14408T A23403G GGG28881AAC C29870Y

EPI_ISL_449159
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E852D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5691T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC C29870Y

EPI_ISL_449163
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E85B4/2020
 C4755T G11083T C14805T T17247C G26144T

EPI_ISL_449164
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E85C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1943T C2627M C2704T C3037T G3871K C14408T A15249G A23403G C25047T GGG28881AAC

EPI_ISL_449166
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E85F0/2020
 A1- C241T C3037T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_449171
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8675/2020
 ATTAAAGGTTT1- C241T C3037T C7006T C14408T C18526T C19421T A23403G G25429T C25916Y

EPI_ISL_449172
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8684/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G C25728T GGG28881AAC C29870M

EPI_ISL_449175
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/England/NORW-E86B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2268T C3037T T4346A C9977A C13694T C14408T G17608T C19973Y A23403G G24197T G25429T

EPI_ISL_449275
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4154/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_449277
 2020-04-18 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4170/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_450518
 2020-04-18 2020-05-21
 Latvia hCoV-19/Latvia/018/2020
 C241T C3037T C7765T A10291G C10605T C14408T G18412T T19839C C21575T A22179G A23403G G28685T GGGG28881AACT

EPI_ISL_450701 MT506886
 2020-04-18 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A8972G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450704
 2020-04-18 2020-05-22
 United States hCoV-19/USA/IL-UW-350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450706
 2020-04-18 2020-05-22
 United States hCoV-19/USA/IL-UW-352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450713 MT506898
 2020-04-18 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C5869T C14408T T17154C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450714
 2020-04-18 2020-05-22
 United States hCoV-19/USA/IL-UW-360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T G28798A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450715
 2020-04-18 2020-05-22
 United States hCoV-19/USA/IL-UW-361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_452834 MT558685
 2020-04-18 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0261/2020
 ATTAAAGGT1- C241T C3037T C9521T C14408T C15324T A21137G A23403G C23635T

EPI_ISL_452835 MT558686
 2020-04-18 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0262/2020
 ATTAAAGG1- C241T C3037T C14408T C15324T A21137G A23403G C23635T

EPI_ISL_454106
 2020-04-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0389b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1186A C3037T C14408T C17502T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454181
 2020-04-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1103G C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454189
 2020-04-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1103G C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454191
 2020-04-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1103G C3037T C14408T A23403G C27689T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454192
 2020-04-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1103G C3037T C14408T A23403G C27689T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454193
 2020-04-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1103G C3037T C14408T A23403G C27689T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454194
 2020-04-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0470a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1103G C3037T C14408T A23403G C27689T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454195
 2020-04-18 2020-05-28
 Portugal hCoV-19/Portugal/PT0471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1103G C3037T C7594T G9095T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_456920
 2020-04-18 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4146/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_456921
 2020-04-18 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4149/2020
 C241T C3037T G6461T C14408T A20268G A23403G G27987T C28567T C28854T

EPI_ISL_456922
 2020-04-18 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4150/2020
 C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T

EPI_ISL_456924
 2020-04-18 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4153/2020
 G219T C241T C3037T A5280G C10798A C13862T C14408T A23403G C28836T

EPI_ISL_457090
 2020-04-18 2020-06-02
 United Kingdom hCoV-19/England/EXET-13570C/2020
 C241T C3037T C12559T C14408T A23403G A27620G GGG28881AAC C29013T

EPI_ISL_457178
 2020-04-18 2020-06-02
 United Kingdom hCoV-19/England/EXET-135ECB/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457189
 2020-04-18 2020-06-02
 United Kingdom hCoV-19/England/EXET-136000/2020
 C241T C3037T A13456G C14408T A23403G GGG28881AAC

EPI_ISL_457295
 2020-04-18 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5A7F/2020
 C241T A489G C3037T C14408T G21119T A23403G G25429T

EPI_ISL_457298
 2020-04-18 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5AE8/2020
 C241T C3037T C14408T C18788T T19839C C22987T A23403G

EPI_ISL_457299
 2020-04-18 2020-06-02
 United Kingdom hCoV-19/England/LOND-D5AF7/2020
 C241T C3037T T12739C C14408T C20936T A23403G GGG28881AAC

EPI_ISL_458077
 2020-04-18 2020-06-03
 India hCoV-19/India/CCMB_L040_P1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G7675T G11083A C13458T C13730T AA21550MW C23929T C28311T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_458792
 2020-04-18 2020-06-04
 United Kingdom hCoV-19/England/BRIS-12912B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T C12459T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458833
 2020-04-18 2020-06-04
 United Kingdom hCoV-19/England/BRIS-128EDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T G26144T C26542T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458885
 2020-04-18 2020-06-04
 United Kingdom hCoV-19/England/BRIS-129194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C3037T C3698Y C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459982
 2020-04-18 2020-06-05
 Morocco hCoV-19/Morocco/6904/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T G9841A C9967T C14408T G20623A G21578T A23403G G25563T C27167T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460657
 2020-04-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460761
 2020-04-18 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2755A C3037T ATGTAGACAATTCTA6561- C14408T C15324T G22616T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460762
 2020-04-18 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6270T C6723T C14408T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460832
 2020-04-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T A17292G C17690T C18877T A23403G G25563T C26165T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460842
 2020-04-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Flevoland_8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460845
 2020-04-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G248T T2787C C3037T G11083T C14408T C22311A C23086T A23403G G26539T C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460847
 2020-04-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12348T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461346
 2020-04-18 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462000
 2020-04-18 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C0EF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A17460G G22021A A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462001
 2020-04-18 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C1108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A G11083A C13536T C14408T A23403G C23731T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462011
 2020-04-18 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C3B71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T G6622T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462017
 2020-04-18 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C50BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462018
 2020-04-18 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C54FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9018C C14408T T21784C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462032
 2020-04-18 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C7885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5777T C14408T T19839C T22207C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462045
 2020-04-18 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CA6A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3809T T7438C G10097A G11083T C14408T C18744T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462053
 2020-04-18 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CBB97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6311G G11743T C14408T C18713T A23403G GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462060
 2020-04-18 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CCECA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462061
 2020-04-18 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CCEE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T G26144T C26340T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462075
 2020-04-18 2020-06-06
 United Kingdom hCoV-19/England/SHEF-D0959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462081
 2020-04-18 2020-06-06
 United Kingdom hCoV-19/England/SHEF-D1EE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_463330 MT642073
 2020-04-18 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S840/2020
 A1- C241T C1059T C3037T G4399T C14408T A15426G C18029T C19029T A23403G G25563T A26014G T29410C G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_463475 MT642416
 2020-04-18 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S985/2020
 ATTAAAG1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_465208
 2020-04-18 2020-06-11
 United Kingdom hCoV-19/England/20169020604/2020
 C241T C3037T G6123A G11417T C12525T G14020R C14408T G18225K A23403G GGG28881AAC

EPI_ISL_465218
 2020-04-18 2020-06-11
 United Kingdom hCoV-19/England/20169023204/2020
 C241T C313T C3037T C11379Y C14408T A23403G G28086K GGG28881AAC

EPI_ISL_465253
 2020-04-18 2020-06-11
 United Kingdom hCoV-19/England/20169042204/2020
 C241T C3037T C12025Y T13266C C14408T A23403G T24376Y GGG28881AAC

EPI_ISL_465322
 2020-04-18 2020-06-11
 United Kingdom hCoV-19/England/20172002704/2020
 C241T C3037T C14408T G15243K G18972T A23403G C27442Y GGG28881AAC

EPI_ISL_467784 MT680219
 2020-04-18 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0387/2020
 ATTAAAGGTT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T C26681T C29870A

EPI_ISL_467785 MT680220
 2020-04-18 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0388/2020
 ATTAA1- C241T C1059T C3037T C14408T C22624T A23403G G25563T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_467786 MT680221
 2020-04-18 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T G29868A C29870A

EPI_ISL_467787 MT680222
 2020-04-18 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_467790 MT680225
 2020-04-18 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0395/2020
 ATTAAAGGTTTATACC1- A38R C241T C1059T C3037T C3608T C14408T G20991T A23403G G25563T C25585T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_467791 MT680226
 2020-04-18 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0396/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T C22624T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_467972
 2020-04-18 2020-06-16
 United States hCoV-19/USA/CA-SR0448/2020
 C241T C835T C1059T C1887T C3037T C14408T A23403G G25563T T28110C G29315C

EPI_ISL_468222 LR824142 LR860736
 2020-04-18 2020-06-16
 Switzerland 120030
 C241T G942A C3037T C13554T C14408T A19326R A19339R A19422R A20268G A22406R G22410D A22474M A23403G C26013Y

EPI_ISL_468223 LR824145 LR860738
 2020-04-18 2020-06-16
 Switzerland 120031
 C241T T658Y A2655C C3037T C14408T T22402Y T22514Y A23403G A24862G C28629T

EPI_ISL_468377 MT628113
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1393/2020
 ATT1- G8525A A17482G T21126C G24815C C27944Y C28887T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468547 MT628270
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C9811T G13836R C14408T A23403G G25563T G29543A

EPI_ISL_468594 MT631786
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C379A C1059T C3037T C14408T C22224T A23403G G25563T C29774S TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468595 MT631787
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1651/2020
 C241T C379A C1059T C3037T C6813Y C14408T C22224T A23403G G25526K G25563T T27318A G28703T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_468596 MT631788
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C379A C1059T C3037T C14408T C22224T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_468598 MT631790
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1654/2020
 AT1- C241T C379A C1059T C3037T C14408T C22224T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469302
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/England/NORT-28B1F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C14408T A23403G A28877G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469307
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/England/NORT-28B171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7860T T11177C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469309
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/England/NORT-28B223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469538
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127FD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469591
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127F7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6581G G7229A A10948G C14408T A23403G C25521T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469613
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127FAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G13879A G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469644
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127CA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G343T ATG1605- A10317G C22458T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469674
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127BF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T G15543T A17205G C19066A A23403G C25584T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469706
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127F8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469728
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127F50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- -11075TTT G11083T C14805T C15240T C15342Y C18086T T23031C G26144T G28842T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469730
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127FC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2395T G2448A C3037T C6573T C8481A C14408T G18972T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469772
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127BE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_469789
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127FBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2485T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469798
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127EEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C92T C241T C3037T C7765T G10097A C14408T A23403G C23731T G28580T GGG28881AAC G29427T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469857
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-102708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11824T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469864
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-1028F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9967T A10323G C14408T A23403G C23896T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470202
 2020-04-18 2020-06-18
 United Kingdom hCoV-19/England/CAMB-1AAB9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13335T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471427
 2020-04-18 2020-06-21
 Belgium hCoV-19/Belgium/ULG-10192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7869T G10793T A14270C C14408T C18687T A23403G C24621T C28500T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471556
 2020-04-18 2020-06-22
 Brazil hCoV-19/Brazil/SP-512/2020
 C241T G2782T C3037T C14408T G20433T A23403G G25088T C26270T GGG28881AAC T29848A A29850T AAAAAAAAAAAAA29891-

EPI_ISL_471586
 2020-04-18 2020-06-22
 India hCoV-19/India/CCMB_L040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C6312A G7675T G11083A C13458T C13730T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471587
 2020-04-18 2020-06-22
 India hCoV-19/India/CCMB_L040_P3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6312A G7675T G11083A C13458T C13730T C23929T C28311T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_471750
 2020-04-18 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20726/2020
 C241T C1059T C3037T C14408T A17048C A23403G G25563T C29370Y

EPI_ISL_472000
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F6B9/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_472001
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F6C8/2020
 C241T C311T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_472884
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16002B/2020
 ATTAA1- T87Y C241T C274Y C3037T C14408T A23403G GGG28881AAC

EPI_ISL_472976
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16079F/2020
 ATTA1- C241T C3037T T4186C G11801A G12191T C14408T T19839C G22468T A23403G G25552T GGG28881AAC

EPI_ISL_472994
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160920/2020
 C241T C3037T T4186C G11801A G12191T C14408T C18377Y T19839C G22468T A23403G G25552T GGG28881AAC

EPI_ISL_473009
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160AA5/2020
 ATT1- C241T C3037T C14408T C14741T A23403G C26340T

EPI_ISL_473534
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2713/2020
 C241T C3037T C6636T C10798A C13862T C14408T C20930T C21304A A23403G C28836T

EPI_ISL_473535
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2714/2020
 C4540T C8782T T9477A C14805T G23868T C25714T G25979T C26029A T28144C C28657T C28863T

EPI_ISL_473540
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2719/2020
 C241T C3037T C14408T C22879A A23403G G25598T C27527T

EPI_ISL_473541
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2720/2020
 G625T T2326A C4540T C8782T T9477A C13743T C14805T G23868T C25714T G25979T C26029A T28144C C28657T C28863T

EPI_ISL_473543
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2722/2020
 C241T C3037T A6481G C14408T G22708T C22879A A23403G

EPI_ISL_473546
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2725/2020
 C241T C3037T C3738T G7027T C10798A C13862T C14408T A23403G G27047A C28836T

EPI_ISL_473547
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2726/2020
 C241T C3037T C3411T C3885T A5353G C14408T C17104T A20268G T22795C A23403G C28253T G29734C

EPI_ISL_473548
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2727/2020
 ATG1605- C5869T C12710T C21575T C28854T

EPI_ISL_473549
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2729/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_473550
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2730/2020
 C241T C3037T C3411T C3885T A5353G C14408T C17104T A20268G C23280A A23403G C28253T G29734C

EPI_ISL_473551
 2020-04-18 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2731/2020
 C241T C3037T C14408T C22879A A23403G

EPI_ISL_475158
 2020-04-18 2020-06-23
 Sweden hCoV-19/Sweden/20-50863/2020
 C501T C1059T C3037T C14408T G15380T G18255T A23403G C25546T G25563T

EPI_ISL_476132 LR824565 LR861094
 2020-04-18 2020-06-25
 Switzerland 140090
 C241T G487K G596S A2476R A2554R C3037T T3835K T5393Y A6750R T7284Y G10265A C11109Y C14220Y C14408T C15049Y T18729Y G19204K C19524Y C21707Y C22227Y C22347M A23403G C26060Y GGG28881AAC A29314R

EPI_ISL_476133 LR824563 LR861100
 2020-04-18 2020-06-25
 Switzerland 140091
 C241T T658Y A2655C C3037T C14408T A23403G A24862G C28629T

EPI_ISL_476509
 2020-04-18 2020-06-25
 Canada hCoV-19/Canada/QC_AM6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1150T C3037T C4886T C7712T C14408T G14829T A23403G G25563T G27561T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476990
 2020-04-18 2020-06-27
 Belgium hCoV-19/Belgium/rega-0418422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478017
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17278T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478018
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C18511T A23403G C24130T G27430A C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478027
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATG1605- C12710T C18555T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478028
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C19170T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478410
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/LOND-D5DD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T A8555- C9967T C14408T G19542T -23171A A23403G G24200A -24375T C25528T GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_478841
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFF9D/2020
 C241T C3037T C14408T C22224T A23403G G27461T C28335T GGG28881AAC C29836T

EPI_ISL_478843
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFFD9/2020
 C241T C3037T C6026T C14408T C19586A T19839C A23403G C26681T GGG28881AAC

EPI_ISL_478845
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B001E/2020
 ATTAAAGGTTT1- C241T C3037T G3152T A8628W C14408T T18398C A23403G G24781T G28580A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_478847
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B003C/2020
 C241T C3037T G11083T C14408T G14710T T18398C A23403G G24781T G28580A GGG28881AAC AAA29901-

EPI_ISL_478848
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B005A/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_478850
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0078/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_478852
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0096/2020
 C241T G2833A C3037T C5051T C14408T C16289T A23403G G25429T T28688C A29896R A29903-

EPI_ISL_478854
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B00D2/2020
 C241T C3037T G11083T C14408T T19839C C22208T A23403G C26058T C26681T GGG28881AAC

EPI_ISL_478855
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B00F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T T19839C A23403G G25906T C26681T GGG28881AAC T29417C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_478857
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B011B/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_478859
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0175/2020
 C241T C1059T C3037T A9436G C14408T G15907T A23403G G25563T G25785T G28079T

EPI_ISL_478861
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0193/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_478863
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B01B1/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_478948
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0C38/2020
 C241T C3037T C14408T A20268G C21930T A23403G C26571T C28854T G28968T A29903-

EPI_ISL_478949
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0C56/2020
 C241T C3037T C14408T A20268G C21930T A23403G C26571T C28854T G28968T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_478950
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0C74/2020
 C241T C3037T C14408T A23403G T28414C GGG28881AAC AAAAAAAA29896-

EPI_ISL_478960
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0D53/2020
 AT1- C241T C3037T C11050T C14408T T18831C G20102T A23403G GGG28881AAC G29711T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_478962
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0D71/2020
 ATTAAA1- C241T C3037T G12202T C14408T C17639T A23403G G25429T G26109T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_479083
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1C91/2020
 C241T C3037T C6723T C7164T C14408T A23403G GGG28881AAC AAAAAAA29897-

EPI_ISL_479089
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1D52/2020
 C241T C3037T C14408T A20268G C21930T A23403G C26571T G28001T C28854T G28968T AAAAAAA29897-

EPI_ISL_479136
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2313/2020
 C241T T1537C C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_479140
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B23D7/2020
 C241T C3037T C14408T T18831C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_479153
 2020-04-18 2020-06-30
 United Kingdom hCoV-19/England/OXON-B253B/2020
 C241T C1959T C2939T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_479576
 2020-04-18 2020-06-30
 Singapore hCoV-19/Singapore/498/2020
 C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_479763
 2020-04-18 2020-07-01
 United States hCoV-19/USA/FL-Miami-04_UMTL-9BWN/2020
 ATTAAAGGTTT1- T490A C1213T G1976A C3177T C8782T C12008A T13180C C16084T T18736C C24034T T26729C G28077C T28144C T29173C A29700G AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_480234
 2020-04-18 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV030/2020
 C241T C2113T C3037T C5211T C7765T C14408T C17690T C18877T G20616T A23403G G25563T C26982T

EPI_ISL_480863 MT704030
 2020-04-18 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0212/2020
 AT1- T490A C3177T C8782T T18144C T18736C C21575T C24034T T26729C C27998T G28077C T28144C AG29700GA CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_481236
 2020-04-18 2020-07-02
 Senegal hCoV-19/Senegal/5718/2020
 C241T C3037T C5622T C12115T ATT13931- C14408T C15324T A23403G C27804T

EPI_ISL_481243
 2020-04-18 2020-07-02
 Senegal hCoV-19/Senegal/5986/2020
 ATTAAAGGTT1- C241T C1190T C3037T G11083T C14408T C15324T G15517A A23403G C25466T CTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29831-

EPI_ISL_481771
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CC72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481791
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CC54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481794
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CCDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T C19328T G19509A A23403G G28077T C28472A GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_481797
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CCCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T C28472A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481803
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CAD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C843Y C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481817
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CAC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T G4285T C14408T A23403G G25555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481818
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CBDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25149T G25523T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481820
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CB57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10681T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481837
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CB48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481842
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CB1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8078A G10540T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481847
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CC81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481851
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CC63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481854
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CC90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481869
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CB2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10540T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481883
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CCEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C7688T C10228T C14408T A23403G C28253T G29587T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481884
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CA96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G626R C3037T A10323R G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481887
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CAF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11505C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481902
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CB75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G7360A C9344T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481906
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CB39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7267T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481909
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CC36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C6651T C12439A C14408T G17561A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481949
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CBB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6283C C14408T T19839C G21204K A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481954
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CAA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T G27281T GGG28881AAC C29149T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481958
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CCBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_482102
 2020-04-18 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-10289C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14793T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482354
 2020-04-18 2020-07-03
 United States hCoV-19/USA/OR-PROV-081/2020
 C241T C3037T C11563T C14408T C16952T C17028T C18877T A23403G G24550A G25563T

EPI_ISL_482355
 2020-04-18 2020-07-03
 United States hCoV-19/USA/OR-PROV-083/2020
 C241T C3037T C5907T C14408T A20268G A23403G G26193A

EPI_ISL_482446
 2020-04-18 2020-07-03
 United States hCoV-19/USA/OR-PROV-204/2020
 C241T C3037T C11563T C14408T C16952T C17028T C18877T A23403G G24550A G25563T

EPI_ISL_482447
 2020-04-18 2020-07-03
 United States hCoV-19/USA/OR-PROV-205/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_483256
 2020-04-18 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0611-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G G21255C A23403G C28854T

EPI_ISL_483283
 2020-04-18 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0658-IPL/2020
 C241T C2594T C3037T C4582T C11102T C14408T T17033C A20268G G21518A A23403G C23679T

EPI_ISL_483286
 2020-04-18 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0661-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C1059T C3037T C3373T A12820G C14408T A23403G G25563T G29543T

EPI_ISL_484642
 2020-04-18 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T C29420T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484644
 2020-04-18 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15760A C18171A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484645
 2020-04-18 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1980A C3037T T11581A C12025T C14408T C14708T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484650
 2020-04-18 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C15017T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484651
 2020-04-18 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T95C C241T C3037T T4165C C10798A C13862T C14408T C15017T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485118
 2020-04-18 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26544536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C3037T C9996T C14408T A21979T A23403G G25563T C27964T C29353T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485120
 2020-04-18 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26544539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G C23551T T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485123
 2020-04-18 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26544542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7819T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485124
 2020-04-18 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26544543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4288A C9491T G11083T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485127
 2020-04-18 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26544548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1191T G1980A C3037T A3193C C14408T C16616T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485136
 2020-04-18 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26544561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7819T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485888
 2020-04-18 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26544562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T G1980A C3037T C14408T G14534A C16616T A23403G G25563T TTTTAGCC27793- C27964T

EPI_ISL_485990
 2020-04-18 2020-07-10
 United States hCoV-19/USA/WA-UW-2414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- A31T C36T C241T C3037T C12053T T14034C C14408T C17678T A23403G G25555T C28770T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_487847
 2020-04-18 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G C26191T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489869 EPI_ISL_491065
 2020-04-18 2020-07-14
 Romania hCoV-19/Romania/ROSV_3169/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T T2593C C3037T C10755T C14408T A20268G A23403G C23481T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_490579
 2020-04-18 2020-07-15
 United Kingdom hCoV-19/England/NOTT-1127AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3264T C4540T C8782T T9477A G12731A C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490580
 2020-04-18 2020-07-15
 United Kingdom hCoV-19/England/NOTT-1127BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8502T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490635
 2020-04-18 2020-07-15
 United Kingdom hCoV-19/England/SHEF-D0018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2536T C3037T C14408T C16260T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491139
 2020-04-18 2020-07-16
 Oman hCoV-19/Oman/24647/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C13694T C14408T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_491565
 2020-04-18 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C5884Y C10376Y C14408T A23403G A25798G T26715K G26720R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491599
 2020-04-18 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2215G C3037T A10874G C12823T C14408T A23403G G25429T G25440A C25916T T26677C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491635
 2020-04-18 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB1995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T A29761C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492073 MT775833
 2020-04-18 2020-07-19
 Poland SARS-CoV-2/human/POL/PL_P48/2020
 C241T C3037T C3587T G7936A C11572T C14408T A23403G GGG28881AAC C29870M

EPI_ISL_492903
 2020-04-18 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C1246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492915
 2020-04-18 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C1334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492923
 2020-04-18 2020-07-20
 United Kingdom hCoV-19/England/NORT-28B28D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T A8734G C14408T G22093A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492927
 2020-04-18 2020-07-20
 United Kingdom hCoV-19/England/NORT-28B1DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2902T C3037T G7065S C14408T A23403G A24385G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492928
 2020-04-18 2020-07-20
 United Kingdom hCoV-19/England/NORT-28B1EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T C14408T G22093A A23403G C27741T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492936
 2020-04-18 2020-07-20
 United Kingdom hCoV-19/England/NORT-28B1BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T T6294C C14408T A23403G C28310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492939
 2020-04-18 2020-07-20
 United Kingdom hCoV-19/England/NORT-28B26F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T5263C G11083T C14805T T17247C G25218T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492953
 2020-04-18 2020-07-20
 United Kingdom hCoV-19/England/NORT-28B19F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4084T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_492983
 2020-04-18 2020-07-20
 Italy hCoV-19/Italy/NegrarVR_4/2020
 C241T A873G C3037T C5173T C12915T C14408T A19298T A20268G C22224G A23403G T29867A C29870A

EPI_ISL_493555
 2020-04-18 2020-07-21
 United Kingdom hCoV-19/England/NOTT-11287B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2558T G11083T C14805T G26144T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493556
 2020-04-18 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G1820A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494178
 2020-04-18 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-167F45/2020
 ATTAAAGGTTTATACC1- C241T C3037T G11083T C14408T A23403G G24603R A25575C AAAAA29899-

EPI_ISL_494217
 2020-04-18 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G13749T C14408T G17808T G21624T A23403G G27915T GGG28881AAC

EPI_ISL_494227
 2020-04-18 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-16832A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C14741T C21516T A23403G AAA29901-

EPI_ISL_494229
 2020-04-18 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2232T C3037T C14408T C14877T C19185T A23403G C24034T T28382C GGG28881AAC AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_494299
 2020-04-18 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1688A3/2020
 ATTAAAGGTTTA1- C241T C1348T C3037T C14408T C19716T A23403G GGG28881AAC G29777T AAAAAAAAAAAAAA29890-

EPI_ISL_494361
 2020-04-18 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168D68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T T5465C C14408T G21624T A23403G G24102A GGG28881AAC

EPI_ISL_494370
 2020-04-18 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168E29/2020
 ATTAAAGG1- C241T C3037T T5465C C14408T G21624T A23403G G24102A GGG28881AAC AAAAAAAA29896-

EPI_ISL_495583
 2020-04-18 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S001111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4704T C14408T C21855T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495605
 2020-04-18 2020-07-23
 United States hCoV-19/USA/MN-MDH-1306/2020
 ATTA1- C2485T C8782T G14350T C17747T A17858G C18060T A24694T T28144C G28812T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_495609
 2020-04-18 2020-07-23
 United States hCoV-19/USA/MN-MDH-1310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C10030T G17427T A17858G C18060T A24694T T28144C G28812T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_496546
 2020-04-18 2020-07-24
 India hCoV-19/India/BJMC_1658/2020
 ATTAAAGGTTTA1- C241T C313T C3037T C5312A C5700A C6883T C9112T C14408T A23403G GGG28881AAC AT29866- G29868T

EPI_ISL_496547
 2020-04-18 2020-07-24
 India hCoV-19/India/BJMC_1675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C1101T T2289C A6081G C6312A G11083T C13730T C23929T C26110T C28311T

EPI_ISL_497890
 2020-04-18 2020-07-25
 India hCoV-19/India/BJMC_1622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C629- C3037T C5700A C11878- C14408T A23403G GGG28881AAC

EPI_ISL_498710 MT806771
 2020-04-18 2020-07-27
 United States SARS-CoV-2/human/USA/FL-QDX-229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C14408T T21322A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498711 MT806772
 2020-04-18 2020-07-27
 United States SARS-CoV-2/human/USA/FL-QDX-230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6627T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498712 MT806773
 2020-04-18 2020-07-27
 United States SARS-CoV-2/human/USA/FL-QDX-231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6312T A10880G C14408T A23403G G25563T G25784T G28878T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499309
 2020-04-18 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D3AF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29734T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499310
 2020-04-18 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D3B03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2142T C3037T C14408T C19170T G19509A A23403G G26951T GGG28881AAC C28905T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499311
 2020-04-18 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D3B21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499312
 2020-04-18 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D3B4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17410T C18788T T19839C G21830C A23403G C27688T GGG28881AAC G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500833 MT911798
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0670/2020
 ATTAAAGGTT1- C241T C1059T C3037T C3990T C14408T C21575T A23403G T23602C G25563T

EPI_ISL_500836 MT911801
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0673/2020
 ATTAA1- C241T C1059T C3037T C14408T G19891T A23403G G25563T

EPI_ISL_500838 MT911803
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A5541G C14408T G19891T A23403G G25563T C29870M

EPI_ISL_500839 MT911804
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G C24442T G25563T C29870M

EPI_ISL_500840 MT911805
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0677/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T A29903-

EPI_ISL_500842 MT911807
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C17639T A20268G A23403G A28222G

EPI_ISL_500843 MT911808
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0680/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_500845 MT911810
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T ATG518- AAGTCATTT686- C1059T G2808A C3037T G6373T C14408T G19009T A23403G G25563T A26433G T27511C G29868R C29870A

EPI_ISL_500846 MT911811
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G T25525A G25563T C25658T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_500848 MT911813
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0686/2020
 ATTAAAGGTTTA1- C241T C313T C3037T C14408T T14466C A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_500849 MT911814
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25249T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_500850 MT911815
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A38R C241T T1918C C3037T C3157T C3165T C14408T C18877T A23403G G25563T C29870A

EPI_ISL_500851 MT911816
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T G12794A C14408T A23403G G25563T A27491G

EPI_ISL_500852 MT911817
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C2676T C3037T G10688T C14408T C16937T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_500853 MT911818
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T G5555A C14408T A23403G G25563T C27005T G29868A

EPI_ISL_500854 MT911819
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0693/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C7482T C14408T C16260T A23403G G25563T G26690T A28358T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_500856 MT911821
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0700/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_500858 MT911823
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0702/2020
 ATTAAAGGT1- C241T C1059T C2110T C2997T C3037T C10319T A12286G C12729T C14408T A23403G G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_509707 MT844025
 2020-04-18 2020-08-05
 United States SARS-CoV-2/human/USA/UT-CDC-9770/2020
 C241T C1059T C3037T C11919T C14408T C21998T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_512505
 2020-04-18 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16973C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G T25219K

EPI_ISL_513234
 2020-04-18 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH760/2020
 C241T C3037T C14408T G25563T C26735T C29627T

EPI_ISL_513235
 2020-04-18 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH761/2020
 C241T C3037T C13426T C14408T C22444T G25563T C26735T C28854T

EPI_ISL_513236
 2020-04-18 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH762/2020
 C241T C3037T C14408T G25563T C26735T

EPI_ISL_513238
 2020-04-18 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH768/2020
 C241T C3037T C14408T A17715G G25563T C26735T

EPI_ISL_513240
 2020-04-18 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH770/2020
 C241T C3037T C8782T C14408T G25563T C26735T

EPI_ISL_513241
 2020-04-18 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH771/2020
 C241T C3037T C8782T C10582T C14408T T15009C C22444T A23403G G25563T C26735T C28854T -29866AACAAC

EPI_ISL_513242
 2020-04-18 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH772/2020
 C241T C3037T C9924T C10582T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513243
 2020-04-18 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH773/2020
 C241T C3037T C9924T C10582T C14408T C22444T G25563T C26735T C28854T

EPI_ISL_513244
 2020-04-18 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH774/2020
 C241T C3037T C14408T G25563T C26735T G29427T

EPI_ISL_513245
 2020-04-18 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH776/2020
 C241T C3037T C8782T C9924T C10582T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513246
 2020-04-18 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH777/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513247
 2020-04-18 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH778/2020
 C241T C3037T C9924T C14408T C22444T G25563T C26735T C28854T

EPI_ISL_514673
 2020-04-18 2020-08-17
 United States hCoV-19/USA/NV-NSPHL-A0110/2020
 ATTAAA1- C241T C539T C1059T C3037T C4113T A7921G C14408T G16741T A23403G G25563T

EPI_ISL_515212
 2020-04-18 2020-08-18
 Canada hCoV-19/Canada/QC_AL4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18086T T21363G A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515224
 2020-04-18 2020-08-18
 Canada hCoV-19/Canada/QC_AP4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T C9042A C14408T C15324T C18086T C23086T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515382
 2020-04-18 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0111/2020
 ATT1- C241T C379A C1059T C3037T C4113T CC14407TT A23403G G25563T G28487A

EPI_ISL_515384
 2020-04-18 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C8802T C14408T C16650T A23403G G24050T G25563T A28900G

EPI_ISL_515385
 2020-04-18 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0114/2020
 ATTAAA1- C241T C1059T C3037T C8802T C14408T A23403G G25563T

EPI_ISL_515559
 2020-04-18 2020-08-19
 Brazil hCoV-19/Brazil/SP-155/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G11453A C12053T C14408T A23403G G25088T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_520664
 2020-04-18 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L109275764/2020
 C8782T G11230T G20915A T28144C G28167A G28878A G29742A

EPI_ISL_520665
 2020-04-18 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L116596767/2020
 C241T C3037T ACTATTCAAACAATTGTTGAGGTTCAACCTCAATTAGAGATGGAACTTACACCAGTTGTTCAG3266- C14408T A23403G GGG28881AAC

EPI_ISL_520671
 2020-04-18 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L2004034680/2020
 C241T C3037T C14408T A23403G

EPI_ISL_522673 MT973315
 2020-04-18 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C4540T A4624G C8782T T9477A C14805T G25979T G26062T T28144C C28311T C28657T C28863T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_523173
 2020-04-18 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1547G C3037T C14408T T14438C G15380T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523235
 2020-04-18 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T C10408T G11596T C14408T C18555T A23403G A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523428
 2020-04-18 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7749T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523967
 2020-04-18 2020-08-27
 Brazil hCoV-19/Brazil/SP-168/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3241T C14408T G17122T A23403G G25088T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862CTC

EPI_ISL_523985
 2020-04-18 2020-08-27
 Brazil hCoV-19/Brazil/SP-202/2020
 ATTAAAGGTTTATACC1- C241T C3037T C3092T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_526842
 2020-04-18 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0666/2020
 ATTAA1- C241T C1059T C3037T C3990T C11074T C14408T A23403G T23602C G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_530070
 2020-04-18 2020-09-10
 Spain hCoV-19/Spain/MD-LP71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5240T C8782T C26088T C26340T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534329
 2020-04-18 2020-09-13
 Spain hCoV-19/Spain/MD-H12-88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2845C C3037T C14408T A20268G A23403G C27476T T28251CTG CA28253TC G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534768
 2020-04-18 2020-09-14
 United Kingdom hCoV-19/England/OXON-B0764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C3037T C14408T T18831C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_534828
 2020-04-18 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2F4C/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_534834
 2020-04-18 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3048/2020
 ATTAAAGGTTTATAC1- A2480G C2558T G11083T C14805T G26144T AAAAA29899W

EPI_ISL_536398
 2020-04-18 2020-09-15
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr97/2020
 A1- A2810G C3264T C15324T G21268T T21644C C29303T AA29902-

EPI_ISL_541778
 2020-04-18 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286EA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7124Y C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541876
 2020-04-18 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr94/2020
 ATTAAA1- A2810G C5544T C15324T T21644C C29303T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_541877
 2020-04-18 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr95/2020
 A1- A2810G G11562T C15324T T21644C C23240A C29303T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_542526
 2020-04-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T AAA29901-

EPI_ISL_542532
 2020-04-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T G13448A C14408T C20806T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542561
 2020-04-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T A18082G C21637Y A23403G G25563T C27964T

EPI_ISL_542580
 2020-04-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C26464T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542584
 2020-04-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T9853C C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542614
 2020-04-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542706
 2020-04-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T G29000T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542728
 2020-04-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17808T A23403G G25563T T27384C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542802
 2020-04-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5210A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542808
 2020-04-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11083T C14408T C18788T C19862T C21304T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542878
 2020-04-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17808T C21721T A23403G G25563T T27384C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546439
 2020-04-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C2189Y C3037T T9853C C14408T A23403G G26526T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_546511
 2020-04-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G T24982C G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_560632
 2020-04-18 2020-09-29
 France hCoV-19/France/GE8805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T GAACTT3308- C3688T G14290A C14408T C15324T C20132T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT506889
 2020-04-18 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT506891
 2020-04-18 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT506899
 2020-04-18 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T G28798A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT506900
 2020-04-18 2020-05-21
 United States SARS-CoV-2/human/USA/WI-UW-361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT627760
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S605/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628043
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S629/2020
 ATTAAAG1- C241T C1059T C3037T C12880T C14408T C21575T A23403G G25563T C26013T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628046
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S630/2020
 ATT1- C241T C1059T C3037T C12880T C14408T C21575T A23403G G25563T C26013T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628048
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S628/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C12880T C14408T C21575T A23403G G25563T C26013T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628052
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S626/2020
 AT1- C241T C1059T C3037T C12880T C14408T C21575T A23403G G25563T C26013T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628058
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S641/2020
 AT1- C683T C1342T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT628062
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S624/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G C27630T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628064
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S640/2020
 ATTAAAGGTTT1- C8782T G15406A C17010T C17747T A17858G C18060T T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

MT628065
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S623/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628077
 2020-04-18 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S627/2020
 ATTAAA1- C241T C1059T C3037T C12880T C14408T C21575T A23403G G25563T C26013T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT811022
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0448-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C835T C1059T C1887T C3037T C14408T A23403G G25563T T28110C G29315C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811269
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0611-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G G21255C A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811296
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0658-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2594T C3037T C4582T C11102T C14408T T17033C A20268G G21518A A23403G C23679T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811299
 2020-04-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0661-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C313T C1059T C3037T C3373T A12820G C14408T A23403G G25563T G29543T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873069
 2020-04-18 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00322/2020
 C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T C27964T

MT873121
 2020-04-18 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00305/2020
 C241T C2416T C3037T C14408T C22591T A23403G G25563T G26233T

MT873149
 2020-04-18 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00321/2020
 C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T C27964T C28717T

MT873188
 2020-04-18 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00304/2020
 ATT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T C28819A

MT873189
 2020-04-18 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00301/2020
 ATTAAA1- C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T G27282T C27964T

MT873249
 2020-04-18 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00308/2020
 C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T C27964T

MT873333
 2020-04-18 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00315/2020
 C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T C27964T

MT873395
 2020-04-18 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00306/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T

MT873422
 2020-04-18 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00310/2020
 C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T C27964T

MT873467
 2020-04-18 2020-08-08
 United States SARS-CoV-2/human/USA/MA-DPH-00317/2020
 C241T T833C C1059T C3037T C14408T C20099T A23403G G25563T C27964T

EPI_ISL_421201
 2020-04-19 2020-04-07
 Belgium hCoV-19/Belgium/ULG-10027/2020
 C241T C3037T C4582T A11839G C14408T T19839C A23403G GGG28881AAC

EPI_ISL_433174
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2071/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_433176
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2077/2020
 C241T C1101T C3037T C14408T G16647T A23403G A25798G GGG28881AAC

EPI_ISL_433177
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2078/2020
 C241T G2883A C3037T C3619T C14408T A20268G A23403G G28395A G29734C

EPI_ISL_433178
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2079/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_433181
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2082/2020
 C241T C3037T C14408T T19248C A20268G A23403G

EPI_ISL_433182
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2083/2020
 C241T G362A C3037T T7098C C14408T A20268G A23403G C28854T

EPI_ISL_433183
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2084/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_433184
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2085/2020
 C241T C3037T G4632A C14408T A20268G A23403G C28854T G29543C

EPI_ISL_433185
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2086/2020
 C241T C3037T C6573T C14408T A23403G C25528T G27715T GGG28881AAC

EPI_ISL_433186
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2087/2020
 C241T C3037T C14408T A20268G A23403G A28390G

EPI_ISL_433187
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2088/2020
 C1251T C5183T C7423T

EPI_ISL_433188
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2089/2020
 C241T C3037T C14408T T20196A A20268G A23403G C28854T

EPI_ISL_433190
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2092/2020
 C241T C3037T C6573T C14408T A23403G C25528T G27715T GGG28881AAC

EPI_ISL_433194
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2096/2020
 C241T C3037T C10712T C14408T C21440T A23403G GGG28881AAC

EPI_ISL_433195
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2097/2020
 C241T C3037T C9165T G11083T C14408T A23403G C25433T

EPI_ISL_433196
 2020-04-19 2020-04-29
 United Kingdom hCoV-19/Scotland/EDB2098/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_435690
 2020-04-19 2020-05-05
 Singapore hCoV-19/Singapore/85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C6310A C6312A C9532Y G11083T C13730T C19524T C23929T C28311T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_436612 MT706425
 2020-04-19 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C337T G11083T C28310A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437528
 2020-04-19 2020-05-11
 United States hCoV-19/USA/OR-OHSU-0048/2020
 T10A C241T G1954T C3037T C14408T G16813A C19172T A23403G GGG28881AAC

EPI_ISL_437733
 2020-04-19 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah238/2020
 C241T C3037T C14408T C15714T C18877T A23403G G25563T C26735T G28975T

EPI_ISL_438157
 2020-04-19 2020-05-12
 United States hCoV-19/USA/WA-S604/2020
 C241T C1059T C3037T C14408T A23403G G25555T G25563T

EPI_ISL_438161
 2020-04-19 2020-05-12
 United States hCoV-19/USA/WA-S608/2020
 T13C C241T C313T C3037T T8200C C14408T A23403G G25552T GGG28881AAC

EPI_ISL_438195
 2020-04-19 2020-05-12
 United States hCoV-19/USA/WA-S642/2020
 C241T C1059T C3037T C12880T C14408T G15191T C16260T A23403G G25563T T27384C G29553A

EPI_ISL_438199
 2020-04-19 2020-05-12
 United States hCoV-19/USA/WA-S646/2020
 C241T A2161G C3037T C4993T C14408T A15593G C16376T C18877T A23403G G25563T

EPI_ISL_438200
 2020-04-19 2020-05-12
 United States hCoV-19/USA/WA-S647/2020
 C241T C3037T A5538T C14408T G16813A T22795C A23403G T25783C GGG28881AAC

EPI_ISL_438201
 2020-04-19 2020-05-12
 United States hCoV-19/USA/WA-S648/2020
 C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T

EPI_ISL_438202
 2020-04-19 2020-05-12
 United States hCoV-19/USA/WA-S649/2020
 C241T C3037T C14408T C15368T T19839C A23403G GGG28881AAC C29784T

EPI_ISL_438560
 2020-04-19 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81061/2020
 C241T C1170T C3037T C11379T C14408T C16178T A23403G G27651C GGG28881AAC

EPI_ISL_438565
 2020-04-19 2020-05-12
 United Kingdom hCoV-19/England/CAMB-810BC/2020
 C241T C1684T C3037T C4002T G10097A C10198A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC

EPI_ISL_438567
 2020-04-19 2020-05-12
 United Kingdom hCoV-19/England/CAMB-810E9/2020
 C241T C3037T C4002T C9438T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_438579
 2020-04-19 2020-05-12
 United Kingdom hCoV-19/England/CAMB-811C8/2020
 C241T C1859T A2986G C3037T C6558T G9130T C13730T C14408T A23403G G25429T G26529T

EPI_ISL_439151
 2020-04-19 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2100/2020
 C241T C3037T A10874G C14408T A23403G G25429T G25440A C25916T T26677C G29745T

EPI_ISL_439152
 2020-04-19 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2101/2020
 A2480G C2558T G7393T G11083T C14805T G17259T T17290C C23625T G26144T A26973G G29262T

EPI_ISL_440884
 2020-04-19 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9B8D5/2020
 C241T C3037T C6578T G11083T C14408T G19677T A23403G GGG28881AAC

EPI_ISL_440894
 2020-04-19 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9BA1B/2020
 C222T C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_442032
 2020-04-19 2020-05-12
 United Kingdom hCoV-19/England/SHEF-C87A5/2020
 C241T C3037T A3421G C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_444243
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5D3A/2020
 C241T C3037T T9697C C14408T C20178T A23403G GGG28881AAC

EPI_ISL_444244
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5D49/2020
 T9519G G11083T C14805T T17247C C21575T C25416T G26144T

EPI_ISL_444246
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5D67/2020
 C241T T2228G C3037T C9474T C12342T C14408T C16289T T21632C A23403G C25096T G25429T

EPI_ISL_444249
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5E19/2020
 C241T C3037T C9491T A11537G C14408T C21575T A23403G

EPI_ISL_444250
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5E37/2020
 C241T C313T C14408T A23403G G24199T G29392T

EPI_ISL_444251
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5E55/2020
 C241T C1059T C3037T C14408T C18171T A23403G G24368T G25563T

EPI_ISL_444252
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5E64/2020
 C241T C1059T C1437T C3037T A7757G T13006C C14408T A23403G G25563T C25688T A25864G

EPI_ISL_444253
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5E82/2020
 C241T C3037T C14408T A23403G

EPI_ISL_444254
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5E91/2020
 C241T C313T C3037T C14408T A23403G G25354T GGG28881AAC C29095T

EPI_ISL_444256
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5EBF/2020
 C241T C3037T G5513A C14408T A23403G GGG28881AAC

EPI_ISL_444257
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5ECE/2020
 C241T C3037T G6986T A9243G C14408T A23403G C25350T

EPI_ISL_444258
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5EDD/2020
 C241T C3037T C14408T A23403G C23415T GGG28881AAC

EPI_ISL_444259
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5EEC/2020
 C241T C1059T A1904G C3037T C14408T A23403G G24368T G25563T C27769T

EPI_ISL_444260
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5EFB/2020
 C241T C3037T C14408T A22101T A23403G GGG28881AAC

EPI_ISL_444263
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5F25/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_444398
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7FC71/2020
 C241T C1059T C1218T C3037T C9286T C14408T A23403G G25563T G28378T G28899C

EPI_ISL_444420
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7FE11/2020
 C241T C3037T C5178T C8994T C14408T A23403G GGG28881AAC

EPI_ISL_444421
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7FE20/2020
 A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_444422
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7FE3F/2020
 C241T C3037T C6027T C14408T A23403G A26234G GGG28881AAC

EPI_ISL_444423
 2020-04-19 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7FE4E/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_445239
 2020-04-19 2020-05-15
 Sweden hCoV-19/Sweden/20-07672/2020
 C241T C1059T C3037T C10138T G10354T C14408T A23403G G24368T G25563T

EPI_ISL_447137
 2020-04-19 2020-05-16
 Belgium hCoV-19/Belgium/ULG-10145/2020
 G1440A G2891A C3040T C18570T C26028T C26340T

EPI_ISL_447190 MT506696
 2020-04-19 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20220/2020
 C241T C829T C1059T C3037T C14408T C16260T A23403G G25563T

EPI_ISL_448979
 2020-04-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6DDC/2020
 ATTAA1- C241T C3037T C8717T G9224T C14408T A23403G G25429T

EPI_ISL_448986
 2020-04-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6E9D/2020
 ATTAAAGGTTTATACC1- C241T C3037T A10720G C14408T A23403G C25728T GGG28881AAC

EPI_ISL_448994
 2020-04-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6F9A/2020
 ATTA1- C241T A2775G C2940T C3037T G3259T C14408T C21648T A23403G

EPI_ISL_448995
 2020-04-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6FA9/2020
 AT1- C241T C1943T C2704T C3037T C14408T A15249G A23403G C25047T GGG28881AAC

EPI_ISL_449002
 2020-04-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E70E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C23929Y GGG28881AAC

EPI_ISL_449007
 2020-04-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7166/2020
 ATTA1- C241T C2940T C3037T C14408T C21306T A23403G C29870M

EPI_ISL_449012
 2020-04-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E71C0/2020
 ATTAAAGGTT1- C241T C3037T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_449015
 2020-04-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7272/2020
 A1- C1314T G11083T C14805T T17247C G26144T

EPI_ISL_449026
 2020-04-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7351/2020
 C241T C3037T G11083K C14408T A23403G C25728T GGG28881AAC

EPI_ISL_449030
 2020-04-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E739D/2020
 ATTA1- C241T A476G C3037T C10507T C14408T A16638G C18877T T22072Y A23403G G25563T C27110Y

EPI_ISL_449165
 2020-04-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E85E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_449188
 2020-04-19 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449276
 2020-04-19 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4155/2020
 C241T C3037T C10798A C11173T C13862T C14408T A23403G C28836T

EPI_ISL_449799
 2020-04-19 2020-05-19
 Slovenia hCoV-19/Slovenia/MB0419/2020
 ATTAAAGGTTTATACCTT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T G28646A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_450246
 2020-04-19 2020-05-20
 Russia hCoV-19/Russia/Kipen-RII6907V/2020
 C241T C3037T C3602T C14408T C22450T A23403G G24040T GGG28881AAC

EPI_ISL_450524
 2020-04-19 2020-05-21
 Latvia hCoV-19/Latvia/024/2020
 C241T C3037T C7765T A10291G C14408T G18412T T19839C C21575T A23403G G28685T GGGG28881AACT

EPI_ISL_452082
 2020-04-19 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-244/2020
 T99C C241T C1059T C3037T C6361T C14408T A23403G A24454G G25563T C29719T

EPI_ISL_452178 MT517436
 2020-04-19 2020-05-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-26/2020
 A1- C222T C6312A C7609T G11083T C13730T T16939C C23929T A26019G T28297C C28311T AA29902-

EPI_ISL_452179 MT517437
 2020-04-19 2020-05-27
 Taiwan SARS-CoV-2/human/TWN/CGMH-CGU-27/2020
 ATTAAAG1- C222T C6312A C7609T G11083T C13730T T16939C C23929T A26019G T28297C C28311T A29903-

EPI_ISL_452194
 2020-04-19 2020-05-27
 India hCoV-19/India/NIV-11677/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T GTTATG515- C3037T C5700A G9526T C14408T A23403G CGCTTC26351- GGG28881AAC A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452195
 2020-04-19 2020-05-27
 India hCoV-19/India/NIV-11681/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G204T C241T C3037T T9628C C14408T G20773T C21627T A23403G G28362T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452196
 2020-04-19 2020-05-27
 India hCoV-19/India/NIV-11683/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T T9628C C10401T C14408T G20773T C21627T A23403G A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452197
 2020-04-19 2020-05-27
 India hCoV-19/India/NIV-11687/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1348T C3037T C4679T C5700A C14408T A23403G G23593T T23815C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452833 MT558684
 2020-04-19 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0260/2020
 AT1- C241T C1059T C3037T C14408T C21575T A23403G C25318T G25563T

EPI_ISL_453464
 2020-04-19 2020-05-27
 United Kingdom hCoV-19/England/LOND-D604F/2020
 C2306T C8782T C20483T C24370T T28144C G28878A G29742A

EPI_ISL_454182
 2020-04-19 2020-05-28
 Portugal hCoV-19/Portugal/PT0458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T A1103G C3037T C14408T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454508
 2020-04-19 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26491/2020
 C884T G1397A C1469T TTG3333- A3591G C4234T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_455647
 2020-04-19 2020-06-01
 India hCoV-19/India/S17/2020
 C241T C3037T G3351T C14408T A23403G

EPI_ISL_456766
 2020-04-19 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25471C G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456880
 2020-04-19 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3492/2020
 C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_457070
 2020-04-19 2020-06-02
 United Kingdom hCoV-19/England/EXET-13555D/2020
 C241T C2878T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457854
 2020-04-19 2020-06-02
 Kenya hCoV-19/Kenya/P1132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3990T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458756
 2020-04-19 2020-06-04
 United Kingdom hCoV-19/England/BRIS-129237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G27077T G28077T C28472A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458785
 2020-04-19 2020-06-04
 United Kingdom hCoV-19/England/BRIS-1292EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C10626T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_458863
 2020-04-19 2020-06-04
 United Kingdom hCoV-19/England/BRIS-129316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G10540A G11083T C14805T C25169T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459910
 2020-04-19 2020-06-05
 China hCoV-19/mouse/Harbin/HRB-26m/2020
 C4456T C9491T G12332A A23056C ATCAGACTCAGACTA23583- A24468G C25603T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_459979
 2020-04-19 2020-06-05
 Morocco hCoV-19/Morocco/6901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C1059T T1666C C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459980
 2020-04-19 2020-06-05
 Morocco hCoV-19/Morocco/6902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T A691C C3037T C8175T C14408T C16608T A23403G G25273T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459981
 2020-04-19 2020-06-05
 Morocco hCoV-19/Morocco/6903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T C4234T G6404T C8208T C14408T C15324T A19010C G22363T A23403G C29362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460760
 2020-04-19 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461015
 2020-04-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8179A C14408T A23403G G25563T C25782T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461022
 2020-04-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1882T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461046
 2020-04-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9223T T11638C C14408T A20059G A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461048
 2020-04-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9223T G11417T T11638C C14408T A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461137
 2020-04-19 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6270T C6723T C14408T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461138
 2020-04-19 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2755A C3037T ATGTAGACAATTCTA6561- C14408T C15324T G22616T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461292
 2020-04-19 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461319
 2020-04-19 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461320
 2020-04-19 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T T4885C C5365T C7765T C14408T C17690T C18526T C18877T A23403G G25563T C29627T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462004
 2020-04-19 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C1F59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462008
 2020-04-19 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C2DE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2260T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462016
 2020-04-19 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C4F56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T T27810A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462023
 2020-04-19 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C6376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5855G C14408T A23403G C25614T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462046
 2020-04-19 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CAA8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27434T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462048
 2020-04-19 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CB0E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12455T C14408T C16289T A23403G G25429T C25708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462049
 2020-04-19 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CB49C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1190T C3037T C14408T A23403G G25249T GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462050
 2020-04-19 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CB739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1469T C3037T A11772G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462054
 2020-04-19 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CBF22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2536T C3037T C14408T C16260T G16897T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462064
 2020-04-19 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CD96E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T A23403G G24368T G25563T C27654T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462066
 2020-04-19 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CE04A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7029T C9391T C14408T A20015G A21405T A23403G G28287A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462067
 2020-04-19 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CE62A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T C21575T A23403G G24368T G25563T C25904T C27654T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_465241
 2020-04-19 2020-06-11
 United Kingdom hCoV-19/England/20169036204/2020
 C241T C3037T A10761G C14408T C17502T G21761T A23403G GGG28881AAC

EPI_ISL_465259
 2020-04-19 2020-06-11
 United Kingdom hCoV-19/England/20169043104/2020
 A2480G C2558T G11083T C14805T T17650C C18555T C19374T G26144T

EPI_ISL_465270
 2020-04-19 2020-06-11
 United Kingdom hCoV-19/England/20170003404/2020
 C241T C3037T C8140T C14408T C21365G C21774A A23403G G26730A GGG28881AAC

EPI_ISL_465271
 2020-04-19 2020-06-11
 United Kingdom hCoV-19/England/20170003504/2020
 C241T C3037T C14408T C22713T A23403G G26730A A26896G GGG28881AAC

EPI_ISL_465309
 2020-04-19 2020-06-11
 United Kingdom hCoV-19/England/20172000204/2020
 C241T C3037T C7113T C14408T C23086T A23403G A27237G GGG28881AAC

EPI_ISL_465313
 2020-04-19 2020-06-11
 United Kingdom hCoV-19/England/20172000704/2020
 C241T C3037T G7553T C14408T C16289T A23403G C25163Y G25429T

EPI_ISL_466889
 2020-04-19 2020-06-12
 Germany hCoV-19/Germany/BAV-MVP0208/2020
 A187G C241T C3037T T13434C C14408T C14599T C21846T A23403G

EPI_ISL_467788 MT680223
 2020-04-19 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C10377T C12073T C14408T A23403G G25563T C26455T C28807T C29451T

EPI_ISL_467789 MT680224
 2020-04-19 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0393/2020
 AT1- C241T C1059T C1917T C3037T C10778T C14408T C20719T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_467792 MT680227
 2020-04-19 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T C22624T A23403G G25563T

EPI_ISL_468380 MT628116
 2020-04-19 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C147Y G16068T C17634M G17756R C18559M C19547Y G19658A C26912T G28368T G28739R G29402T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_468419 MT628154
 2020-04-19 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1458/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468420 MT628155
 2020-04-19 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1459/2020
 C241T C1059T C1887Y C3037T C14408T A17615G T21613G C22993T A23403G G25563T

EPI_ISL_469862
 2020-04-19 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-102A3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28027T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470256
 2020-04-19 2020-06-18
 United Kingdom hCoV-19/England/CAMB-1AB30D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16917T G21809T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470566 MT711880
 2020-04-19 2020-06-18
 United States SARS-CoV-2/human/USA/UT-04836/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_471458
 2020-04-19 2020-06-22
 Morocco hCoV-19/Morocco/HMIMV-Rabat1429-04/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C5884T A10479G C14408T C17104T A20268G T21574C TG21577GT A23403G G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_471459
 2020-04-19 2020-06-22
 Morocco hCoV-19/Morocco/HMIMV-Rabat1435-04/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C5884T C14408T C17104T A20268G A23403G G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_471460
 2020-04-19 2020-06-22
 Morocco hCoV-19/Morocco/HMIMV-Rabat1462-04/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C5884T C14408T C17104T A19722G A20268G C21575T G21578T A23403G G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_471885
 2020-04-19 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20864/2020
 C241T C1059T C3037T C4582T A5011M C6606T C14408T G22026K A23403G G25563T T25999C AA29902-

EPI_ISL_471996
 2020-04-19 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F67D/2020
 C241T C884T C3037T G10097A C14408T A23403G C23731T C27513T GGG28881AAC

EPI_ISL_472541
 2020-04-19 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15C7E1/2020
 ATTAAAGGTTTAT1- C241T C1348T C3037T C14408T A23403G GGG28881AAC G29777T A29903-

EPI_ISL_472676
 2020-04-19 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15D188/2020
 AT1- C241T C3037T C6406T C14408T A23403G GGG28881AAC G29777T

EPI_ISL_472734
 2020-04-19 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15D531/2020
 ATTA1- C241T C3037T T5465C C5512T C14408T G21624T A23403G G24102A GGG28881AAC T28963G

EPI_ISL_472890
 2020-04-19 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160085/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G3304T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_472913
 2020-04-19 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160270/2020
 C1346T G11083T G13627T C14805T C15540T C21575T G23402A G26144T A28338G

EPI_ISL_472942
 2020-04-19 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1604D4/2020
 ATTA1- C241T C3037T G4399T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_472955
 2020-04-19 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160629/2020
 C241T C3037T C14408T C14786T A23403G T23875C G24947A C26936T GGG28881AAC G28922K

EPI_ISL_472956
 2020-04-19 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160638/2020
 C241T C3037T C14408T C14741T A23403G

EPI_ISL_472972
 2020-04-19 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160744/2020
 C241T C1059T C3037T C10376T G11609T C14408T G18583T A23403G G23868T G24368T G25563T G27390C G29773T

EPI_ISL_473034
 2020-04-19 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160C81/2020
 C241T C3037T C4467T C5817T G8990T C14408T A23403G GGG28881AAC C29364Y

EPI_ISL_474970
 2020-04-19 2020-06-23
 Israel hCoV-19/Israel/CVL-n-9331/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_474971
 2020-04-19 2020-06-23
 Israel hCoV-19/Israel/CVL-n-9560/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G26217T G29540A A29752T

EPI_ISL_474990
 2020-04-19 2020-06-23
 Israel hCoV-19/Israel/CVL-n-9434/2020
 C241T C1059T C3037T C11916T C14408T C18998T C21731T A23403G G25563T G26217T G29540A G29645T

EPI_ISL_475159
 2020-04-19 2020-06-23
 Sweden hCoV-19/Sweden/20-50860/2020
 C241T C1059T C3037T T10288A C14408T A23403G G24368T G25563T

EPI_ISL_476131 LR824567 LR861099
 2020-04-19 2020-06-25
 Switzerland 140089
 C241T C512Y T549Y T595W C3037T A3057R T3358W T3360W T5045Y T7396Y G8222R A8684R G9233R G10827R C13199Y G13897T C14408T A16403R T16503K A16561W C17304Y A19298W A19334R T19544Y A19548D G20102R A20163R A20904R A22401W T22516W T23308Y A23403G C24621T T26038C G26951K C27577Y GGG28881AAC G28966K C29460Y G29543K C29743Y G29751K

EPI_ISL_478864
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B01DF/2020
 ATT1- C241T C3037T C11074T C14408T A23403G G24781T GGG28881AAC G29706T A29894R

EPI_ISL_478865
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B01FD/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_478868
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0236/2020
 C21T C241T C1059T C3037T G5554T T7302C C7764T C14408T G22141A A23403G G25563T C28932T C29067T

EPI_ISL_478869
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0272/2020
 C241T GTCATGTTA510- C3037T C14408T A20036G A23403G GGG28881AAC C29836T

EPI_ISL_478872
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B02DC/2020
 C241T C593T C3037T C14408T C16260T T19839C A23403G C26681T GGG28881AAC

EPI_ISL_478873
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B02FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTT1- C241T C3037T C14408T A23403G G25429T

EPI_ISL_478874
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T G21724T C22687T A23403G GGG28881AAC G29843K AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_478881
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B044F/2020
 A1- C241T C3037T G3259T C10450T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_478936
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0AF2/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC AAAAA29899-

EPI_ISL_479033
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1693/2020
 C241T C3037T C14408T T18831C C20762T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_479038
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1709/2020
 A1- C241T C3037T C14408T C17642A C21233T A23403G C24621T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_479041
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1754/2020
 C241T C3037T A5068G C5817T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_479054
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B194F/2020
 C241T C3037T C14408T A23403G C25511T C25854T G28077T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_479059
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B19A9/2020
 C241T C1059T C3037T C14408T A23403G G25563T G28321T G29705T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_479062
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1A00/2020
 C241T C1288T T2217C C3037T C5817T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_479127
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B21FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C3037T C14408T A23403G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_479135
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B22BC/2020
 C241T A1630C C3037T C14408T C19011T A23403G C27679T GGG28881AAC AAAAAAAAAAAAAAAA29888-

EPI_ISL_479143
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2410/2020
 ATTAAAGGTTTAT1- C241T C1059T C1567T C3037T A6616G T7579G C14408T G18972T A23403G G24368T G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_479149
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B24D4/2020
 C241T C313T C3037T ACTATTGAAGTGAATAGT3329- C11379T C14408T A23403G G28086T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_479170
 2020-04-19 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2717/2020
 ATTAAA1- C241T C3037T C14408T C18570T A23403G AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_479494
 2020-04-19 2020-06-30
 India hCoV-19/India/NIV-11670/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T G15708T A23403G C27889T GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479495
 2020-04-19 2020-06-30
 India hCoV-19/India/NIV-11857/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C3117T C3634T T13387C C14408T C15324T C20233T G22203T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479575
 2020-04-19 2020-06-30
 Singapore hCoV-19/Singapore/497/2020
 C335T A1045W C6310A C6312A C7279T G11083T C13730T C19524T C23929T A27137G C28311T AAAAAAAAAAAA29892-

EPI_ISL_480309
 2020-04-19 2020-07-01
 Bulgaria hCoV-19/Bulgaria/40/2020
 C241T C3037T C3717T A5269G C14408T A23403G A26530G

EPI_ISL_480859 MT704026
 2020-04-19 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0208/2020
 ATTAAAGGT1- C241T C1059T C1917T C3037T C14408T C18929T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_480862 MT704029
 2020-04-19 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0211/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C1917T C3037T C5622T C14408T C21772T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_481957
 2020-04-19 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CC18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C6849T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481977
 2020-04-19 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DF87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5629A C14408T T19839C A23403G G25552T C25714T GGG28881AAC C29061T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482010
 2020-04-19 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DF3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586Y C12242T C14408T C14708T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482356
 2020-04-19 2020-07-03
 United States hCoV-19/USA/OR-PROV-085/2020
 C241T C313T C3037T C11563T C14408T C18877T C21058T A23403G G25563T G27613T C27945T

EPI_ISL_482357
 2020-04-19 2020-07-03
 United States hCoV-19/USA/OR-PROV-086/2020
 C241T C1059T C3037T C11916T C14408T T17433A A23403G G25563T G28027T G29742T

EPI_ISL_483254
 2020-04-19 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0609-SAN/2020
 ATTAAAGGTT1- C222T C241T C3037T C14408T T15817C A23403G GGG28881AAC

EPI_ISL_483288
 2020-04-19 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0663-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1911T C3037T C14408T A20268G A23403G T24076C C25831T C28854T

EPI_ISL_483457
 2020-04-19 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1003-SAN/2020
 ATTAAAGG1- C241T C3037T C14408T G16957T C19151T A20268G C22858T A23403G T25870C C28854T

EPI_ISL_483460
 2020-04-19 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1012-SAN/2020
 ATTAAAGG1- C222T C241T C3037T C14408T T15817C A23403G GGG28881AAC

EPI_ISL_483462
 2020-04-19 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1014-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C9430T C14408T G18972T G19969A A20268G A23403G C26124T C28854T

EPI_ISL_483465
 2020-04-19 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1018-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1096G C3037T C14408T G14874T C18877T A23403G G25563T

EPI_ISL_485984
 2020-04-19 2020-07-10
 United States hCoV-19/USA/WA-UW-2346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C1059T C3037T C14408T G20134T A23403G G25563T T25655C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_485985
 2020-04-19 2020-07-10
 United States hCoV-19/USA/WA-UW-2361/2020
 ATTA1- C36T C241T C3037T C14408T C18877T G20002T A23403G G25563T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_485992
 2020-04-19 2020-07-10
 United States hCoV-19/USA/WA-UW-2428/2020
 ATTAAAG1- T13C C241T C1059T C3037T A10181C G11083T C14408T C16859T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_485993
 2020-04-19 2020-07-10
 United States hCoV-19/USA/WA-UW-2430/2020
 ATTAAAGGTTTATACCTT1- C36T A1079C G1397A C3162T T7225C C9319T G11083T C19862T T27384C T28688C G29742T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_487662
 2020-04-19 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9483G C14408T A20268G A23403G C23481Y G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487676
 2020-04-19 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14189T C14408T C17690T C18877T A23403G T24923C G25261T G25563T G29527T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488845
 2020-04-19 2020-07-14
 United Kingdom hCoV-19/England/WSFT-25C19AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTCATGTTA510- C3037T G11083T C14408T A20268G C20555Y A23403G C25710T G28237T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489185
 2020-04-19 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-102A5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T G11083K C14408T A23403G G27877K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489198
 2020-04-19 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-102CAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10594T C14408T A17342G A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489204
 2020-04-19 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-102AD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12815T C14408T C14676T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489216
 2020-04-19 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-102C54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489871 EPI_ISL_491067
 2020-04-19 2020-07-14
 Romania hCoV-19/Romania/ROSV_3242/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C10228T C14408T A20268G A23403G A29827T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_490205
 2020-04-19 2020-07-15
 Germany hCoV-19/Germany/MGZ-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19816T G22813T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490207
 2020-04-19 2020-07-15
 Germany hCoV-19/Germany/MGZ-03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19816T G22813T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490613
 2020-04-19 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C8839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21784C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490621
 2020-04-19 2020-07-15
 United Kingdom hCoV-19/England/SHEF-CBDCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11471T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491066
 2020-04-19 2020-07-16
 Romania hCoV-19/Romania/ROSV_3194/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G C27707T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840CT

EPI_ISL_492063
 2020-04-19 2020-07-18
 United States hCoV-19/USA/AK-PHL280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C4113T C9724T C14408T C15010A A23403G G25563T C27964T G28321T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492113
 2020-04-19 2020-07-20
 Australia hCoV-19/Australia/SAP151/2020
 ATTA1- C241T G1589A C3037T C14408T A23403G G25429T G29474T

EPI_ISL_493413
 2020-04-19 2020-07-21
 Singapore hCoV-19/Singapore/653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGT1- G2035T C6310A C6312A G11083T A11782G C13730T C19524T C23929T G27798T C28311T C28758T GGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29705-

EPI_ISL_493468
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/England/NORT-298821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C11195T C11916T C14408T A23403G T25180C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493469
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/England/NORT-298830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493470
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/England/NORT-29885E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15906T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493558
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/England/NOTT-1128D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C2137A C3037T T8764C C14408T G15438T G17331T T18758C A20268G A23403G T26972C C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493560
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/England/NOTT-1128F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493975
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-15C13E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C12484Y C14408T A23403G G24348T C28610A AAAAAAAAAAAAAA29890-

EPI_ISL_494159
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-167DE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G7975A G10097A T13216G A13898G C14408T A23403G C23731T GGG28881AAC

EPI_ISL_494179
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-167F63/2020
 ATTAAAGGTTTATACC1- C241T C3037T G11083T C14408T A23403G G24603R A25575C AAAA29900-

EPI_ISL_494216
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-16825A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A G11083T G14118A C28311T G28851T

EPI_ISL_494245
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T10722C C14408T C19602T A23403G C26313T G27670C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_494252
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168542/2020
 ATTA1- C241T C3037T C14408T C14741T C22997T A23403G T24923C G25459K

EPI_ISL_494257
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1685AC/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T G21624T A23403G G25598T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_494291
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-16880D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1589R C3037T C14408T A23403G G25429T G29474T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_494305
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A12936R C14408T C19007T A23403G C25339T G28314T GGG28881AAC AAAAAAAA29896-

EPI_ISL_494319
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168A43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C29459T

EPI_ISL_494336
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168B6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G388A C3037T C14408T G21624T A23403G A24810G GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_494341
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168BB9/2020
 ATTAAAGGTTTATACC1- C241T C829T C1059T C3037T C14408T A23403G G25563T G27415A G28371T

EPI_ISL_494351
 2020-04-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168CB6/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C10376T C14408T G18583T A23403G G24368T G25563T G28122K G29773T

EPI_ISL_495086
 2020-04-19 2020-07-22
 United Kingdom hCoV-19/England/WSFT-25C18BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTCATGTTA510- C3037T A9741G G11083T C14408T A20268G A23403G G28237T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495090
 2020-04-19 2020-07-22
 United Kingdom hCoV-19/England/WSFT-25C1950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4058Y C6128M G11083T C14805T C16017T T25510Y G26144T G28842T G28899T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_496521
 2020-04-19 2020-07-24
 India hCoV-19/India/BJMC_1697/2020
 ATTA1- A29- C723T A6081G C6312A G11083T C13730T A22278G C23929T C27847T G28077T C28311T G29468T

EPI_ISL_496548
 2020-04-19 2020-07-24
 India hCoV-19/India/BJMC_1727/2020
 ATTAAAG1- T10A C241T C313T C3037T C5700A C14408T T16993C A23403G C27590T GGG28881AAC AA29902-

EPI_ISL_499314
 2020-04-19 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D3BB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10582T C11109T C13424A C14408T A23403G A23923C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501151
 2020-04-19 2020-07-30
 United States hCoV-19/USA/WA-UW-7745/2020
 ATTAAAGGTTTATACCTTC1- AAC34TTT C241T C1059T C3037T C14408T A23403G G25563T C28826T A29806G

EPI_ISL_510950
 2020-04-19 2020-08-07
 Portugal hCoV-19/Portugal/PT0691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C6594T C14408T C21242T A23403G G26062T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511506
 2020-04-19 2020-08-08
 Portugal hCoV-19/Portugal/PT0957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T A6248C C14408T G14829T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_515560
 2020-04-19 2020-08-19
 Brazil hCoV-19/Brazil/SP-156/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C5144T A12064T C14408T C18348T A23403G G23856T C24904T G25088T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_523208
 2020-04-19 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T G17544T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523236
 2020-04-19 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T C10408T G11596T C14408T C18555T A23403G A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523984
 2020-04-19 2020-08-27
 Brazil hCoV-19/Brazil/SP-193/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12053T C14408T C20719T G22094A A23403G G25088T G25922T C28507T GGG28881AAC AGGAGA29860- TG29867CC AAAAAAA29897-

EPI_ISL_523990
 2020-04-19 2020-08-27
 Brazil hCoV-19/Brazil/SP-209/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_527732
 2020-04-19 2020-09-04
 United States hCoV-19/USA/MN-CDC-6568/2020
 C241T C3037T C14408T C16830T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_530071
 2020-04-19 2020-09-10
 Spain hCoV-19/Spain/MD-LP72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A17615G A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534814
 2020-04-19 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2D9D/2020
 C241T T1333A C3037T C6968T T8215C C14408T A23403G GGG28881AAC A29903-

EPI_ISL_536422
 2020-04-19 2020-09-16
 Singapore hCoV-19/Singapore/881/2020
 ATTAAAGG1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T A29749W AAAAAAAAAAAA29892-

EPI_ISL_541847
 2020-04-19 2020-09-23
 Lithuania hCoV-19/Lithuania/MR-LUHS-Eilnr101/2020
 ATTAAA1- A2810G C15324T T20526C T21644C G25049T C29303T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_542537
 2020-04-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-1111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C16308T C16694T A23403G G25563T A25986T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542544
 2020-04-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-1127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C18463T C20148T A23403G G25563T C27964T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542551
 2020-04-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-1144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542565
 2020-04-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-1175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G A11991G G14118T C14408T G15243T C17550T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542586
 2020-04-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-1210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C16308T C16694T C18175T A23403G G25563T A25986T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542794
 2020-04-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-1725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15026T C18463T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542880
 2020-04-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-1853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4931A C14408T C19979T C23191T A23403G G25563T A29371G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546413
 2020-04-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C10319T C14408T C16308T C16694T C18175T A23403G G25563T A25986T C27964T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

MT627763
 2020-04-19 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S604/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25555T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627766
 2020-04-19 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S608/2020
 ATTAAA1- T13C C241T C313T C3037T T8200C C14408T A23403G G25552T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628039
 2020-04-19 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S642/2020
 AT1- C241T C1059T C3037T C12880T C14408T G15191T C16260T A23403G G25563T T27384C G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628040
 2020-04-19 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S647/2020
 ATT1- C241T C3037T A5538T C14408T G16813A T22795C A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628063
 2020-04-19 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S646/2020
 ATTAAAGGTTT1- C241T A2161G C3037T C4993T C14408T A15593G C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628079
 2020-04-19 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S649/2020
 ATTAAAG1- C241T C3037T C14408T C15368T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628082
 2020-04-19 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S648/2020
 ATT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT811267
 2020-04-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0609-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T T15817C A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811301
 2020-04-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0663-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1911T C3037T C14408T A20268G A23403G T24076C C25831T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811464
 2020-04-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1003-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T G16957T C19151T A20268G C22858T A23403G T25870C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811467
 2020-04-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1012-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T T15817C A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811469
 2020-04-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1014-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C9430T C14408T G18972T G19969A A20268G A23403G C26124T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811472
 2020-04-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1018-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1096G C3037T C14408T G14874T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT967982
 2020-04-19 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6568/2020
 C241T C3037T C14408T C16830T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_428857
 2020-04-20 2020-04-22
 Gambia hCoV-19/Gambia/GC19-029/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T

EPI_ISL_434675
 2020-04-20 2020-04-30
 Sweden hCoV-19/Sweden/20-07607/2020
 C241T C1059T C3037T C4202T G7936T G12911T C14408T C19151T A20860G A23403G G24368T G25563T G25660T

EPI_ISL_434676
 2020-04-20 2020-04-30
 Sweden hCoV-19/Sweden/20-07616/2020
 C241T C3037T C14408T A23403G G25290T GGG28881AAC C29281T

EPI_ISL_435492
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC425/2020
 C241T C3037T C6026T C10335T C14408T C18877T A23403G G25563T

EPI_ISL_435499
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC432/2020
 C241T C1059T C3037T C14408T A23403G C23987T G25563T C29555T

EPI_ISL_435500
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC433/2020
 C241T C1059T C3037T C11916T C14408T C18998T C21642T A23403G G25563T G28079T G29540A

EPI_ISL_435503
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC436/2020
 C241T C478T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_435515
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC448/2020
 C241T C1059T C3037T C7998T C11916T C14408T C17104T C18998T A23403G G25563T G29540A

EPI_ISL_435516
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC449/2020
 C241T C1059T C3037T C14408T A23403G C25006T G25563T

EPI_ISL_435517
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC450/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26895T

EPI_ISL_435518
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC451/2020
 C241T C1059T G2945A C3037T T13672G C14408T C15654T A23403G G25563T T29728C

EPI_ISL_435519
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NJ-NYUMC452/2020
 C241T C829T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_435520
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC453/2020
 C241T C1059T C3037T C14408T A23403G G25563T C25572T T27384C

EPI_ISL_435521
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC455/2020
 C241T C1059T C3037T C14408T G15574A A23403G G25563T

EPI_ISL_435522
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC456/2020
 C241T C1059T C3037T C14408T G14656T A16890G G20134T A23403G G25563T

EPI_ISL_435523
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC457/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G A23712C G25563T G29540A

EPI_ISL_435524
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC458/2020
 C241T C3037T C14408T C18877T A23403G G25563T G28109T

EPI_ISL_435525
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC459/2020
 C241T C1059T C3037T T9931C C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_435526
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC460/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_435527
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC461/2020
 C241T C673T C1059T C3037T C10456T C14408T C16260T G22021T A23403G G25563T C28821A G29764T

EPI_ISL_435528
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC462/2020
 C241T C619T C1059T C3037T C14408T A14912G A20667G A23403G G25563T

EPI_ISL_435534
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC469/2020
 C241T C1059T C3037T A12393G C14408T A23403G G25563T

EPI_ISL_435536
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC471/2020
 C241T C1059T C3037T C9474T C14408T A20755C C21590A A23403G G25563T C26456T

EPI_ISL_435537
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC472/2020
 C241T C1059T C2485T C3037T C11916T C14408T C18998T G19086T A23403G G25563T G29540A

EPI_ISL_435538
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC473/2020
 C241T C1059T C3037T C12747T C14408T A23403G G25563T

EPI_ISL_435577
 2020-04-20 2020-05-05
 United States hCoV-19/USA/LA-EVTL039/2020
 C241T C1059T C3037T G12079A C14408T A23403G G25563T C27964T C28093T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435691
 2020-04-20 2020-05-05
 Singapore hCoV-19/Singapore/86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACT1- C6310A C6312A T8601Y C8606Y G11083T C13730T C19524T C23185T C23929T C28311T CGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29733-

EPI_ISL_435696
 2020-04-20 2020-05-05
 Singapore hCoV-19/Singapore/91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6310A C6312A G6463T T6976Y G8578R G11083T C13730T C19524T C19675M C23929T G26763T C26894T C28311T C28697Y AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_435721
 2020-04-20 2020-05-05
 United States hCoV-19/USA/NY-NYUMC454/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27509T T27680-

EPI_ISL_436456
 2020-04-20 2020-05-06
 India hCoV-19/India/NCDC-4846/2020
 C241T T851C C3037T C14408T G19684T A23403G AG24389MS C28253T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436457
 2020-04-20 2020-05-06
 India hCoV-19/India/NCDC-4859/2020
 C241T C2485T C3037T C14408T A23403G AG24389MS C25318T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436459
 2020-04-20 2020-05-06
 India hCoV-19/India/NCDC-4874/2020
 C241T C3037T T8022K C14408T A15435R G17122T C18877T A23403G AG24389MS G25563T G25793A C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436460
 2020-04-20 2020-05-06
 India hCoV-19/India/NCDC-4876/2020
 C241T C3037T T8022K G11405S C14408T G16433K A17357W G17359R G22226K A23403G AG24389MS TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_436461
 2020-04-20 2020-05-06
 India hCoV-19/India/NCDC-4877/2020
 C241T C842M C3037T T8022K C14408T T16232W A23403G AG24389MS TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_437569
 2020-04-20 2020-05-11
 United States hCoV-19/USA/CA-SR0235/2020
 C241T C1059T C3037T C14408T G17014T A23403G G25563T

EPI_ISL_437734
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah248/2020
 C241T C3037T T7292C C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437735
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah249/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437736
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah252/2020
 C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_437737
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah253/2020
 C241T C3037T T7292C C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437738
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah254/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437739
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah255/2020
 C241T C3037T C8692T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_437740
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah256/2020
 C241T C3037T G8179T C14408T G18433A C18877T C21459T A23403G G25563T C26735T

EPI_ISL_437741
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah257/2020
 C241T C3037T G3109T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437742
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah258/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437743
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah260/2020
 C241T C3037T C14189T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437744
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah261/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437745
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah262/2020
 C241T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437746
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah263/2020
 C241T C3037T G14122T C14408T C18877T C20946T A23403G C23423T

EPI_ISL_437747
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah264/2020
 C3037T G14122T C14408T T19135C A23403G C26735T

EPI_ISL_437748
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah265/2020
 C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T

EPI_ISL_437749
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah266/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437750
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah267/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437751
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah269/2020
 C241T C3037T C14408T C18877T A23403G

EPI_ISL_437752
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah270/2020
 C241T C3037T C14408T C28854T

EPI_ISL_437753
 2020-04-20 2020-05-11
 Saudi Arabia hCoV-19/Saudi Arabia/KAUST-Madinah272/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_438159
 2020-04-20 2020-05-12
 United States hCoV-19/USA/WA-S606/2020
 G4148T C8782T C17747T A17858G C18060T G21893A T28144C C29836T

EPI_ISL_438160
 2020-04-20 2020-05-12
 United States hCoV-19/USA/WA-S607/2020
 C241T C1059T C3037T C14408T C18657T A23403G G25563T

EPI_ISL_438203
 2020-04-20 2020-05-12
 United States hCoV-19/USA/WA-S650/2020
 C1593T C8782T G15406A C17010T C17747T A17858G C18060T T22291C T28144C

EPI_ISL_438204
 2020-04-20 2020-05-12
 United States hCoV-19/USA/WA-S651/2020
 C241T T833C C1059T C3037T C14408T C17163T C23248T A23403G G25563T C27964T

EPI_ISL_438205
 2020-04-20 2020-05-12
 United States hCoV-19/USA/WA-S652/2020
 C241T C1059T C3037T C14408T A23403G G25563T C28826T

EPI_ISL_438215
 2020-04-20 2020-05-12
 United States hCoV-19/USA/WA-S662/2020
 C241T C3037T C6445T C14408T G16813A A23403G GGG28881AAC

EPI_ISL_438554
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-80FFC/2020
 C241T C1059T C3037T C9286T C14408T A22171G A23403G G25563T G28899C

EPI_ISL_438557
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81025/2020
 C241T C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_438558
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81034/2020
 C241T C3037T C12076T C14408T A23403G GGG28881AAC G29701T

EPI_ISL_438559
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81043/2020
 C241T C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_438561
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81070/2020
 C241T C3037T C4002T C4698T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_438563
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8109E/2020
 C241T C3037T C6385T C14408T A23403G G25912T GGG28881AAC

EPI_ISL_438564
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-810AD/2020
 C241T C3037T C9438T G10262A C14408T T19839C C22995T A23403G C26131T A27669G GGG28881AAC

EPI_ISL_438566
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-810CB/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_438568
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81104/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_438574
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8117D/2020
 G1440A G2891A C10507T T21883C A26433G

EPI_ISL_438575
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8118C/2020
 C241T C2416T C3037T T9505C C14408T C14786T G20578T A23403G G25563T

EPI_ISL_438576
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8119B/2020
 C241T C313T T1177C C3037T C3593T C14408T A23403G A23592G G28086T GGG28881AAC

EPI_ISL_438577
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-811AA/2020
 C241T C3037T C14408T C19140T A23403G GGG28881AAC

EPI_ISL_438578
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-811B9/2020
 C241T G2626A C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_438580
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-811E6/2020
 C241T C3037T C14408T A21137G C21638T A23403G G25429T

EPI_ISL_438602
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81FA0/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_438604
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81FCE/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_438608
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82006/2020
 C241T C1059T C3037T C14408T C17939T C19484T A23403G G25563T G28086T

EPI_ISL_438624
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8216D/2020
 A2480G C2558T C9724T G11083T C11653T C13297A C14805T G15780T A21137G G21987A G26144T C27294T

EPI_ISL_438626
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8218B/2020
 C7504T G11083T G13627T C13730T C14805T C15540T G26144T A28338G

EPI_ISL_438628
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/CAMB-821A9/2020
 C241T C3037T G10262A C14408T T19839C C22995T A23403G A27669G GGG28881AAC

EPI_ISL_438976
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3425T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438978
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C4755T C14408T C19955T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438986
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9473A C11758T C13095T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439154
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2105/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_439155
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2106/2020
 C241T C3037T C14408T G15243T A20268G A23403G G29751C

EPI_ISL_439159
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2114/2020
 C241T C3037T C14408T C15324T C20555T A23403G G27047A G28374A C29171T

EPI_ISL_439161
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2128/2020
 C241T C3037T G7178A C14408T A20268G A23403G C26873T C28854T

EPI_ISL_439162
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2130/2020
 C241T G1999T C3037T T6469C C14408T A20268G A23403G C28854T

EPI_ISL_439164
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2132/2020
 C241T C3037T C13356T C14408T C18788T T19839C A23403G A24862G GGG28881AAC C29272T

EPI_ISL_439166
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2136/2020
 C241T C3037T C14408T C18788T T19839C A23403G A24862G C27741T GGG28881AAC

EPI_ISL_439168
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2141/2020
 C241T C3037T G10097A C14408T A23403G C23731T C25160T G25947T G28580T GGG28881AAC

EPI_ISL_439171
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2168/2020
 C241T T2987C C3037T A3215G C14408T G15438T A20268G A23403G A27617G

EPI_ISL_439172
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2176/2020
 C241T C3037T A10874G C14408T A23403G G25429T T26677C

EPI_ISL_439821
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/LIVE-99DE7/2020
 C241T C3037T G12940T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_440867
 2020-04-20 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9B662/2020
 C241T C3037T T3873C G4207T G10097A T13216G C14408T C21789T A23403G C23731T GGG28881AAC

EPI_ISL_443192
 2020-04-20 2020-05-12
 Singapore hCoV-19/Singapore/100/2020
 T153Y C6310A C6312A G11083T C13730T C19524T C22295Y T22321Y C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_444268
 2020-04-20 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5FDA/2020
 A2480G C2558T C2773T G11083T C14805T G26144T G28373T

EPI_ISL_444269
 2020-04-20 2020-05-13
 United Kingdom hCoV-19/England/LOND-D5FF8/2020
 C241T C3037T A11537G C14408T C21575T A23403G

EPI_ISL_444270
 2020-04-20 2020-05-13
 United Kingdom hCoV-19/England/LOND-D6012/2020
 C241T C3037T C3817T G5704T T14133C C14408T A23403G G28798A GGG28881AAC

EPI_ISL_444272
 2020-04-20 2020-05-13
 United Kingdom hCoV-19/England/LOND-D606D/2020
 C241T C3037T C14408T C15960T A23403G

EPI_ISL_444393
 2020-04-20 2020-05-13
 United Kingdom hCoV-19/England/CAMB-79943/2020
 G11083T C14805T T17247C T24529A C25587T G26144T

EPI_ISL_444407
 2020-04-20 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7FD32/2020
 C241T C3037T C7600T C13730T C14408T A23403G G25429T

EPI_ISL_444413
 2020-04-20 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7FDAB/2020
 C241T C3037T C14408T C14786T G21255T A23403G C26176T G26314A GGG28881AAC

EPI_ISL_444415
 2020-04-20 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7FDC9/2020
 C1314T G11083T C11575T C14805T T17247C G26144T T28852C

EPI_ISL_444416
 2020-04-20 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7FDD8/2020
 A2480G C2558T G7393T G10958T G11083T C14805T C21639T C25513T G26144T

EPI_ISL_444417
 2020-04-20 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7FDE7/2020
 C241T C3037T C4002T C5548T G10097A C11962T C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_444419
 2020-04-20 2020-05-13
 United Kingdom hCoV-19/England/CAMB-7FE02/2020
 C241T C3037T C7600T C13730T C14408T A23403G G25429T G27556T

EPI_ISL_444432
 2020-04-20 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80AFB/2020
 A187G C241T C3037T TAT9858- C14408T A23403G C27230T

EPI_ISL_445234
 2020-04-20 2020-05-15
 Sweden hCoV-19/Sweden/20-07571/2020
 C241T T595A C1812T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_445235
 2020-04-20 2020-05-15
 Sweden hCoV-19/Sweden/20-07586/2020
 C241T C1670T C3037T G5950T C13176T C14408T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_445238
 2020-04-20 2020-05-15
 Sweden hCoV-19/Sweden/20-07666/2020
 C241T C1812T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_447331
 2020-04-20 2020-05-17
 Israel hCoV-19/Israel/2123863/2020
 C241T C1059T C1917T C3037T C14408T G17562T A23403G G25563T C26681T AAAAAAAAAAAA29892-

EPI_ISL_447332
 2020-04-20 2020-05-17
 Israel hCoV-19/Israel/2123853/2020
 C241T C1059T C1917T C1959T C3037T T9106C C14408T G17562T A23403G G25563T C26681T AAAAAAAAAAAA29892-

EPI_ISL_447456
 2020-04-20 2020-05-17
 Israel hCoV-19/Israel/130711082/2020
 C241T C2416T C3037T C14408T A23403G G25563T G25855T AAAAAAAAAAAA29892-

EPI_ISL_447587
 2020-04-20 2020-05-17
 India hCoV-19/India/CCMB_C4-15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C635T A1852G C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC

EPI_ISL_448438
 2020-04-20 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110F3C/2020
 C241T C3037T G13690A C14408T A23403G GGG28881AAC

EPI_ISL_449006
 2020-04-20 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7148/2020
 C241T C3037T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_449009
 2020-04-20 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7193/2020
 AT1- ATG1605- G8371T C9072T T21537C G21600A

EPI_ISL_449011
 2020-04-20 2020-05-19
 United Kingdom hCoV-19/England/NORW-E71B1/2020
 ATTAAAGG1- C241T C3037T C14408T C19259M A23403G C25728T GGG28881AAC

EPI_ISL_449019
 2020-04-20 2020-05-19
 United Kingdom hCoV-19/England/NORW-E72CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C16289T A23403G G23612K G25429T

EPI_ISL_449025
 2020-04-20 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C18490Y G22988R G22992A A23403G GGG28881AAC G29742A

EPI_ISL_449031
 2020-04-20 2020-05-19
 United Kingdom hCoV-19/England/NORW-E73BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8655T T11313C C14408T A23403G GGG28881AAC C29803A C29870S

EPI_ISL_449278
 2020-04-20 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4172/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_449280
 2020-04-20 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4189/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_449288
 2020-04-20 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4271/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_450251
 2020-04-20 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7340V/2020
 C241T C3037T C14220T C14408T A23403G C27684T GGG28881AAC C29358T

EPI_ISL_450252
 2020-04-20 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7464S/2020
 C241T C3037T C14408T A20268G A23403G A29647G

EPI_ISL_450253
 2020-04-20 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7488S/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_450254
 2020-04-20 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7501S/2020
 C241T C3037T C14408T A20268G A23403G G29315C

EPI_ISL_450255
 2020-04-20 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7505S/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29747C

EPI_ISL_450256
 2020-04-20 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7520S/2020
 C241T C3037T C14408T T17694C A23403G GGG28881AAC

EPI_ISL_450257
 2020-04-20 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7545S/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_450264
 2020-04-20 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7656S/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_451199
 2020-04-20 2020-05-23
 Uganda hCoV-19/Uganda/UG017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C5301T C8782T G11230T T28144C G28167A G28878A G29742A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_452152
 2020-04-20 2020-05-26
 Belgium hCoV-19/Belgium/20A55/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C15324T C21805T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_452198
 2020-04-20 2020-05-27
 India hCoV-19/India/NIV-11855/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C4679T C5700A A12541G C14408T A23403G T23815C C25721T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452199
 2020-04-20 2020-05-27
 India hCoV-19/India/NIV-12019/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C1541T C3037T C5700A C11518T C14408T A23403G CGCTTC26351- GGG28881AAC A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452200
 2020-04-20 2020-05-27
 India hCoV-19/India/NIV-12024/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C4679T C5700A C14408T A23403G T23815C CGCTTC26351- GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452201
 2020-04-20 2020-05-27
 India hCoV-19/India/NIV-12067/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C14408T G15708T A23403G C27889T GGG28881AAC A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452824 MT558675
 2020-04-20 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0250/2020
 ATTAAAGGT1- C241T C1059T C3037T C9491T C14408T C14925T A23403G G25563T C29870A

EPI_ISL_452825 MT558676
 2020-04-20 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0251/2020
 AT1- C241T C1059T C3037T C9491T C14408T C14925T A23403G G25563T

EPI_ISL_452826 MT558677
 2020-04-20 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0252/2020
 ATTAAAGG1- C241T C1059T C3037T C9491T C14408T C14925T A23403G G25563T

EPI_ISL_452827 MT558678
 2020-04-20 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0253/2020
 ATT1- C241T C1059T C3037T C9491T T9706C C14408T C14925T A23403G G25563T

EPI_ISL_452828 MT558679
 2020-04-20 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0254/2020
 ATTA1- C241T C1059T C3037T C9491T C14408T C14925T A23403G G24145A G25563T

EPI_ISL_452829 MT558680
 2020-04-20 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0255/2020
 ATTAA1- C241T C1059T C3037T C9491T C11835T C14408T C14925T A23403G G25563T C27998T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_452830 MT558681
 2020-04-20 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0257/2020
 ATTAAAGG1- A34T C241T C1059T C3037T C6638T C14408T A23403G A24069T G25563T C26955T G29422T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_452836 MT558687
 2020-04-20 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0263/2020
 ATTAAA1- C241T C3037T C9521T C14408T C15324T A21137G A23403G C23635T

EPI_ISL_452837 MT558688
 2020-04-20 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0264/2020
 ATTAAAGG1- C241T C506T C3037T C7600T C14408T C15324T A23403G

EPI_ISL_453076
 2020-04-20 2020-05-27
 United Kingdom hCoV-19/Scotland/CVR2795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13643T C14408T G15438T A20268G C22088T A23403G C26270T C28708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_453078
 2020-04-20 2020-05-27
 United Kingdom hCoV-19/Scotland/CVR2798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_453463
 2020-04-20 2020-05-27
 United Kingdom hCoV-19/England/LOND-D5FE9/2020
 C241T C2113T C3037T C7765T C8692T C14408T C17690T A18482T C18877T A23403G C25521T G25563T

EPI_ISL_453696
 2020-04-20 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C0A95/2020
 C241T C3037T C11396T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_453698
 2020-04-20 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C1C16/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_453705
 2020-04-20 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C33C4/2020
 C241T C3037T T9429C G11083T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_453709
 2020-04-20 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C43D2/2020
 G11083T C14805T C16887T C17550T TACATG21765- G26144T G28842T

EPI_ISL_453712
 2020-04-20 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C4C7D/2020
 C241T C14408T G18803T C21614T A23403G

EPI_ISL_453714
 2020-04-20 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C51B9/2020
 C241T A5855G C14408T A23403G C25614T GGG28881AAC

EPI_ISL_453736
 2020-04-20 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CA05D/2020
 C241T C1190T C3037T C10186T C14408T A23403G GGG28881AAC

EPI_ISL_453775
 2020-04-20 2020-05-27
 United Kingdom hCoV-19/England/SHEF-D2DA6/2020
 C241T C3037T C7299T C14408T A23403G C23430T GGG28881AAC

EPI_ISL_453999
 2020-04-20 2020-05-28
 Portugal hCoV-19/Portugal/PT0284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G91A C241T C3037T C9286T G11083T C14408T C15324T C19402T A23403G T27555A GGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29736-

EPI_ISL_454501
 2020-04-20 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/20679/2020
 C241T C1059T C1190T C3037T A9848G C11916T C14408T C18885T C18998T A23403G G25563T G29540A

EPI_ISL_454502
 2020-04-20 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/21399/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_455648
 2020-04-20 2020-06-01
 India hCoV-19/India/S18/2020
 C241T C3037T C14408T G15451A G22343A A23403G

EPI_ISL_455649
 2020-04-20 2020-06-01
 India hCoV-19/India/S19/2020
 C1572T C7945T C8782T G22468T A24367G T28144C G28878A G29742A

EPI_ISL_455650
 2020-04-20 2020-06-01
 India hCoV-19/India/S20/2020
 C241T C3037T T11769C C14408T A23403G

EPI_ISL_456930
 2020-04-20 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4168/2020
 C241T C3037T C10798A C13862T C14408T A23403G G23438T G25217T C28836T

EPI_ISL_456931
 2020-04-20 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4169/2020
 C241T C3037T C3543T T12388C C14408T C16289T A23403G G23426T G25429T C27800T

EPI_ISL_456932
 2020-04-20 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4174/2020
 A187G C241T C3037T C14408T A23403G A26009G

EPI_ISL_456933
 2020-04-20 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4196/2020
 C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T

EPI_ISL_456934
 2020-04-20 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4201/2020
 C241T C3037T C5907T G8131T C14408T G21119T A23403G A29412G

EPI_ISL_457255
 2020-04-20 2020-06-02
 United Kingdom hCoV-19/England/EXET-136BF0/2020
 C241T C874T C2416T C3037T C14408T G16245A C19524T A23403G G25563T G26233T

EPI_ISL_458062
 2020-04-20 2020-06-03
 India hCoV-19/India/CCMB_L299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G1820A C6310A C6312A G11083T C13730T C19524T C23929T GC27882CT C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458063
 2020-04-20 2020-06-03
 India hCoV-19/India/CCMB_L301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G1820A C6310A C6312A A8080T G11083T C13730T C19524T C23929T C28311T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458073
 2020-04-20 2020-06-03
 India hCoV-19/India/CCMB_L276_P1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1820A C6310A C6312A G11083T C13730T C19524T AA21550MW C23929T C28311T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_458074
 2020-04-20 2020-06-03
 India hCoV-19/India/CCMB_L301_P1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1820A C6310A C6312A A8080T G11083T C13730T C19524T AA21550MW C23929T C28311T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_458076
 2020-04-20 2020-06-03
 India hCoV-19/India/CCMB_L302_P1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1820A C6310A C6312A G11083T C13730T G15743R C19524T C23929T C28311T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_458121
 2020-04-20 2020-06-03
 Oman hCoV-19/Oman/205030448/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G10265A C14408T C16293T G17302T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_458145
 2020-04-20 2020-06-03
 Brazil hCoV-19/Brazil/AP164346-IEC/2020
 C241T C3037T C14408T A23403G C25721T G27047C T27299C GGG28881AAC T29148C

EPI_ISL_458242
 2020-04-20 2020-06-04
 United States hCoV-19/USA/CA-SR0358/2020
 C241T C1059T C1887T C3037T C14408T A16797G A23403G G25563T

EPI_ISL_458277
 2020-04-20 2020-06-04
 United States hCoV-19/USA/CA-SR0407/2020
 C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_458278
 2020-04-20 2020-06-04
 United States hCoV-19/USA/CA-SR0408/2020
 C241T A1900G C3037T C10778T C14408T C20555A A23403G GGG28881AAC

EPI_ISL_458808
 2020-04-20 2020-06-04
 United Kingdom hCoV-19/England/BRIS-12960E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4874C C6573T C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459978
 2020-04-20 2020-06-05
 Morocco hCoV-19/Morocco/6900/2020
 ATTAAA1- C222T C241T C3037T C3373A G14028T C14408T C19813T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_460770
 2020-04-20 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13721T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460849
 2020-04-20 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G25996T G26501T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461139
 2020-04-20 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C3096T C7765T C10765T C14408T T16472C C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461228
 2020-04-20 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1009T C3037T C14408T C20457T A23403G A24862G C28603T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461293
 2020-04-20 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C11109T C12415T C14408T T19159G G21800T A23403G G25563T G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461350
 2020-04-20 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9817A C9924T G11596T C13011T C14408T G20568A A23403G C23996T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462038
 2020-04-20 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C92D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1469T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462307
 2020-04-20 2020-06-08
 Singapore hCoV-19/Singapore/189/2020
 C6310A C6312A G11083T C13730T C16338Y C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462308
 2020-04-20 2020-06-08
 Singapore hCoV-19/Singapore/190/2020
 C3261T G4300T C6310A C6312A G9923A G11083T C13730T C19524T C23929T G25563T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462309
 2020-04-20 2020-06-08
 Singapore hCoV-19/Singapore/191/2020
 T490A C6310A C6312A G11083T C13730T C16694T G18891A C19524T T21368C C23929T T25903A C28311T AAAAAAAAAAAA29892-

EPI_ISL_462310
 2020-04-20 2020-06-08
 Singapore hCoV-19/Singapore/192/2020
 C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462311
 2020-04-20 2020-06-08
 Singapore hCoV-19/Singapore/193/2020
 C6310A C6312A G11083T C12741T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462312
 2020-04-20 2020-06-08
 Singapore hCoV-19/Singapore/194/2020
 C6310A C6312A T8041Y G11083T C13730T C19524T C23185T C23929T C28311T G29425S GA29427KR AAAAAAAAAAAA29892-

EPI_ISL_462313
 2020-04-20 2020-06-08
 Singapore hCoV-19/Singapore/195/2020
 C6310A C6312A T8815Y G11083T C13730T C16694T G18891A T19449Y C19524T T21368C C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462314
 2020-04-20 2020-06-08
 Singapore hCoV-19/Singapore/196/2020
 C3261T C6310A C6312A T8335Y G11083T A11595R C13730T C19524T C23929T A27926G G27996A C28311T AAAAAAAAAAAA29892-

EPI_ISL_463327 MT642378
 2020-04-20 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S837/2020
 ATT1- C8782T C14898T C17747T A17858G C18060T C25513A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_464041
 2020-04-20 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0042/2020
 C241T C313T C3037T C14408T C14724T A23403G C28331T GGG28881AAC G29781T

EPI_ISL_465262
 2020-04-20 2020-06-11
 United Kingdom hCoV-19/England/20170000704/2020
 C241T T1243Y C2940T C3037T C14408T C19610Y C21707T A23403G

EPI_ISL_465283
 2020-04-20 2020-06-11
 United Kingdom hCoV-19/England/20170035404/2020
 C98T C241T TCATGG505- C3037T G8612T C8713T C14408T C17441M A23403G A26530R G28223S

EPI_ISL_465300
 2020-04-20 2020-06-11
 United Kingdom hCoV-19/England/20170048204/2020
 C241T C3037T T5473Y C14408T A23403G GGG28881AAC

EPI_ISL_465302
 2020-04-20 2020-06-11
 United Kingdom hCoV-19/England/20170048604/2020
 A12G C241T C3037T C13059Y C14408T A23403G GGG28881AAC

EPI_ISL_465311
 2020-04-20 2020-06-11
 United Kingdom hCoV-19/England/20172000504/2020
 C40T C241T C3037T C14408T T17126C A20268G A23403G C28201T C28546A

EPI_ISL_465312
 2020-04-20 2020-06-11
 United Kingdom hCoV-19/England/20172000604/2020
 C241T C3037T G4201T G13201T C14408T A23403G C28377T GGG28881AAC

EPI_ISL_465315
 2020-04-20 2020-06-11
 United Kingdom hCoV-19/England/20172001004/2020
 C21T C241T C3037T C14408T A22405G A23403G G25429T C28253T

EPI_ISL_465318
 2020-04-20 2020-06-11
 United Kingdom hCoV-19/England/20172002104/2020
 C241T C3037T A3234G T4946G C14408T A23403G C27883T GGG28881AAC

EPI_ISL_465332
 2020-04-20 2020-06-11
 United Kingdom hCoV-19/England/20172009004/2020
 C241T C829Y C3037T C14408T A23403G GGG28881AAC

EPI_ISL_465344
 2020-04-20 2020-06-11
 United Kingdom hCoV-19/England/20172043604/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_466888
 2020-04-20 2020-06-12
 Germany hCoV-19/Germany/BAV-MVP0207/2020
 C241T C3037T C8344T C14408T A23403G G25593C

EPI_ISL_467352
 2020-04-20 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2488T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_467793 MT680228
 2020-04-20 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0398/2020
 ATTAAAGGTTTA1- C241T C2113T C3037T T5941C C7765T C14408T C17690T C18877T A22438T A23403G G25563T T27672C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_468070
 2020-04-20 2020-06-16
 Bangladesh hCoV-19/Bangladesh/CHRF_0002/2020
 C241T C3037T G8003K C14408T C15324T A23403G G23868T

EPI_ISL_468227 LR824149 LR860746
 2020-04-20 2020-06-16
 Switzerland 120038
 G210K C241T C3037T G6553T C8950T C13862T C14408T C19470T T20338Y C20428S A20453W T21391Y T21534Y A21551R T21585Y A23403G G25033K T28135C C28836T

EPI_ISL_468383 MT628119
 2020-04-20 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1404/2020
 G8525A A12026C A17482G T21126C C28826Y C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_468387 MT628123
 2020-04-20 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1412/2020
 AT1- G8R G8525A A17482G T21126C G24815C C27970Y C28887T

EPI_ISL_468483 MT628208
 2020-04-20 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1538/2020
 AT1- C241T C1059T C1392T C3037T A8116G C11916T C14408T C18998T A23403G G25563T G29540A

EPI_ISL_468548 MT628271
 2020-04-20 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1619/2020
 ATT1- C4776T C8782T C16887T C17104T C17747Y A17858G C18060T A26945R G28086K T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468719 MT620767
 2020-04-20 2020-06-15
 United States SARS-CoV-2/human/USA/UF-14/2020
 ATTAAAGGTTT1- C241T C1059T C3037T A7981G C9967T C10198T C14408T C15480T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_469119
 2020-04-20 2020-06-17
 Singapore hCoV-19/Singapore/364/2020
 A139R C6310A C6312A G8027T A8492R G11083T C13730T C19524T C23185T C23929T C28311T G29554K AAAAAAAAAAAA29892-

EPI_ISL_469926
 2020-04-20 2020-06-18
 United Kingdom hCoV-19/England/SHEF-10B22B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T G3482A A8821G C14016Y C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470098
 2020-04-20 2020-06-18
 United Kingdom hCoV-19/England/CAMB-1ABCA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T C21614T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470118
 2020-04-20 2020-06-18
 United Kingdom hCoV-19/England/CAMB-1AB297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10116T C14408T A14737G C19017T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470123
 2020-04-20 2020-06-18
 United Kingdom hCoV-19/England/CAMB-1AB385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T C17010T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470181
 2020-04-20 2020-06-18
 United Kingdom hCoV-19/England/CAMB-1ABB7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T C21614T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470186
 2020-04-20 2020-06-18
 United Kingdom hCoV-19/England/CAMB-1ABBF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9438T G10262A C14408T T19839C G20060T C22995T A23403G C25831T A27669G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470323
 2020-04-20 2020-06-18
 United Kingdom hCoV-19/England/CAMB-1ABC5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3195G C14408T G16206T A23403G G25660T C27813T C27920T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_470669
 2020-04-20 2020-06-18
 United States hCoV-19/USA/UT-02051/2020
 C241T C3037T C5184T G11083T C14408T A23403G C26256T C29668T

EPI_ISL_470854
 2020-04-20 2020-06-19
 Australia hCoV-19/Australia/WA37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T A9301G A9409G G11335T C14408T G17964T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471218
 2020-04-20 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G509A C1059T C3037T C3587T C14408T A23403G G25563T A26489G G29395T C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471641
 2020-04-20 2020-06-22
 India hCoV-19/India/CCMB_L276_P3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- G1820A C6310A C6312A G11083T C13730T C19524T C23929T C25096T C28311T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_471642
 2020-04-20 2020-06-22
 India hCoV-19/India/CCMB_L301_P3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- G1820A C6310A C6312A A8080T G11083T C13730T C19524T C23929T C28311T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_471643
 2020-04-20 2020-06-22
 India hCoV-19/India/CCMB_L302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G1820A C6310A C6312A G11083T C13730T C19524T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471743
 2020-04-20 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20719/2020
 C241T C1059T C1519Y C3037T C14408T A23403G G25563T C29733T

EPI_ISL_471745
 2020-04-20 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20721/2020
 C241T C3037T C14408T A16698G A23403G C25665T G28325T A29903-

EPI_ISL_471859
 2020-04-20 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20838/2020
 C28Y C241T C1059T C3037T T6407C C14408T G15444T A23403G G25563T C27371T C27847T

EPI_ISL_471911
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/England/EXET-136CB1/2020
 C241T C3037T C5005T C10156T C14408T A23403G GGG28881AAC

EPI_ISL_471914
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/England/EXET-136CFD/2020
 C241T C1059T C1968T C3037T C14408T T22552G A23403G G25563T G29705T

EPI_ISL_471915
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/England/EXET-136D09/2020
 C241T C3037T C5005T C10156T C14408T A23403G GGG28881AAC

EPI_ISL_471918
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/England/EXET-136D45/2020
 C241T C3037T C5005T C10156T C14408T G22139T A23403G GGG28881AAC

EPI_ISL_471922
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/England/EXET-136D81/2020
 C241T C1059T C3037T T3161G G12067T C14408T A23403G G24368T G25563T G25650T G25775T

EPI_ISL_471926
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/England/EXET-136DEB/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_471934
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/England/EXET-136EE8/2020
 C241T C3037T C4784T C14408T C15720T T19839C A23403G C23664T GGG28881AAC

EPI_ISL_471938
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/England/EXET-136F6D/2020
 C241T C3037T G10324T C14408T A23403G G25429T C28045T

EPI_ISL_471943
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/England/EXET-136FE5/2020
 C241T C874T C2416T C3037T G6943T C14408T G16245A C19524T A23403G G25563T G26233T

EPI_ISL_471944
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/England/EXET-136FF4/2020
 C241T C1108T C3037T C14408T A20268G A23403G T25078C C28854T

EPI_ISL_471947
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/England/EXET-137069/2020
 C241T C874T C2416T C3037T C14408T G16245A C19524T A23403G G25563T G26233T

EPI_ISL_471950
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/England/EXET-13710C/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_472439
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15C101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T3100G G10097A C13584T C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_472626
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15CE37/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_473552
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3689A T11660A C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473553
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A C3037T C3411T C3885T C14408T C17104T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473557
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2769/2020
 C241T G2534A C3037T C14408T A23403G C25925T G26615T GGG28881AAC

EPI_ISL_473558
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2772/2020
 C241T C3037T C14408T C16946T A23403G G26615T GGG28881AAC

EPI_ISL_473560
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T T21644C C26447T C28854T C28948T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473561
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473562
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473563
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6248C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473567
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T694C C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473568
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2399T C3037T T3270C T5338C A11430G C14408T G19117T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473572
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473574
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473598
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3689A T11660A C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475160
 2020-04-20 2020-06-23
 Sweden hCoV-19/Sweden/20-50931/2020
 C241T C3037T C14408T G18340A A23403G G24858A C26447T GGG28881AAC C28887T

EPI_ISL_475161
 2020-04-20 2020-06-23
 Sweden hCoV-19/Sweden/20-50933/2020
 C241T C3037T C12459T C14408T T17781C A23403G C26447T C28391T GGG28881AAC C28887T

EPI_ISL_475303
 2020-04-20 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0EFE/2020
 C241T C3037T C14408T C22227T A23403G GGG28881AAC

EPI_ISL_476127 LR824526 LR861096
 2020-04-20 2020-06-25
 Switzerland 140084
 C241T G1589R C3037T C14184Y C14408T C15324T T18909W T19344Y C21646T T22516W A23403G C26228T T29842Y G29861R A29863M A29866W

EPI_ISL_476130 LR824566 LR861092
 2020-04-20 2020-06-25
 Switzerland 140087
 C241T C3037T T3466Y C6781T C13862T C14408T C15352T C22077T A22488R T22516W A23403G C28836T G29229A C29774Y

EPI_ISL_477276
 2020-04-20 2020-06-29
 United States hCoV-19/USA/MN-MDH-1186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_477293
 2020-04-20 2020-06-29
 United States hCoV-19/USA/MN-MDH-1204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T G14008A C14408T C17676T C22227T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_478033
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25218T G26615T C27213T TT27792- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478035
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3037T C10798A C13862T C14408T C21304A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478875
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0351/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_478877
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B03BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C3037T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_478879
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0412/2020
 C241T C3037T C14408T T18398C A23403G G24781T T27265C GGG28881AAC

EPI_ISL_478880
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0430/2020
 C241T C1059T C3037T T7302C C7764T C14408T G22141A A23403G G25563T C28932T C29067T AAAAA29899-

EPI_ISL_478882
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B049A/2020
 C241T C925T A929G C2142T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_478886
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B053D/2020
 C241T C3037T C6968T A11881G C14408T C23277T A23403G GGG28881AAC

EPI_ISL_478887
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B055B/2020
 C241T C3037T C14408T T18398C A23403G G24781T C27434T GGG28881AAC A29903-

EPI_ISL_478888
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0579/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_478889
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0597/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_478893
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B063A/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_478895
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0658/2020
 C241T C3037T G11083T C14408T C21762T A23403G TTTGTGCTT27785- GGG28881AAC

EPI_ISL_478898
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0694/2020
 C241T C3037T C13264T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_478903
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B06FE/2020
 C241T C3037T C14408T T19839C A23403G G25906T G26262A C26681T GGG28881AAC T29417C

EPI_ISL_478905
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0755/2020
 C241T C3037T C3373A C3923A C11195T C14408T C18252T G19455T A23403G GGG28881AAC

EPI_ISL_478907
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B07BF/2020
 C19T C241T C1205A C3037T C12741T C14408T A23403G C26408T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_478909
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B07DD/2020
 C241T C3037T G12911A A14291C C14408T G22785T A23403G GGG28881AAC

EPI_ISL_478998
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1147/2020
 A187G C241T C3037T C14408T A23403G C28844T

EPI_ISL_479171
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2726/2020
 A6616G G11083T C14805T G26144T G28842T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_479445
 2020-04-20 2020-06-30
 United Kingdom hCoV-19/Wales/PHWC-1652B7/2020
 G1148T A1515G C9223T -11075TTT G11083T C14805T T17247C T20644C C21736T G26144T

EPI_ISL_479574
 2020-04-20 2020-06-30
 Singapore hCoV-19/Singapore/496/2020
 A5068C C6310A C6312A G11083T C11668T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_479582
 2020-04-20 2020-06-30
 Singapore hCoV-19/Singapore/504/2020
 T76A T78G C6310A C6312A G11083T C13730T T15801Y C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_480264
 2020-04-20 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV171/2020
 C241T C3037T C14408T T19839C A23403G C25611A GGG28881AAC

EPI_ISL_481595
 2020-04-20 2020-07-03
 Finland hCoV-19/Finland/20A16S7/2020
 C241T C1059T C3037T G3620A C10537T C14408T C21575T A23403G G24368T G25563T C28453T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481596
 2020-04-20 2020-07-03
 Finland hCoV-19/Finland/20A21S5/2020
 C241T C1059T C3037T G11083T C14408T G17562A A23403G G24368T G24757T G25563T G28003T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481597
 2020-04-20 2020-07-03
 Finland hCoV-19/Finland/20A40S5/2020
 C241T C589T C1059T C3037T C14408T A23403G A23636T G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481598
 2020-04-20 2020-07-03
 Finland hCoV-19/Finland/20A45S5/2020
 C241T C589T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481599
 2020-04-20 2020-07-03
 Finland hCoV-19/Finland/20A48S5/2020
 C241T C589T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481600
 2020-04-20 2020-07-03
 Finland hCoV-19/Finland/20A49S7/2020
 C241T C1059T C3037T G7312T C14408T A23403G A23436G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481601
 2020-04-20 2020-07-03
 Finland hCoV-19/Finland/20A51S7/2020
 C241T C1059T C3037T G7312T C14408T A23403G A23436G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481602
 2020-04-20 2020-07-03
 Finland hCoV-19/Finland/20A57S7/2020
 C241T C1059T C3037T G7312T C14408T A23403G A23436G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481603
 2020-04-20 2020-07-03
 Finland hCoV-19/Finland/20A69S7/2020
 C241T C1059T C3037T G7312T C14408T A23403G A23436G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481604
 2020-04-20 2020-07-03
 Finland hCoV-19/Finland/20A76S7/2020
 C241T T287C C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481991
 2020-04-20 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12E2E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A310M C1059T C1968T C3037T C14408T A23403G G25563T G28808T G29434C G29705T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_482018
 2020-04-20 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DF78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T G15672T A23403G C23731T G26291A G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482030
 2020-04-20 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12E162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T T27919C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482161
 2020-04-20 2020-07-03
 United Kingdom hCoV-19/England/LOND-D61F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3817T T14133C C14408T A23403G G28798A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482178
 2020-04-20 2020-07-03
 United Kingdom hCoV-19/England/LOND-D616A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8689R C14408T A21866G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482183
 2020-04-20 2020-07-03
 United Kingdom hCoV-19/England/LOND-D6197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G903A C3037T A10948G A11117G C14408T C21549T A23403G C27542T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482202
 2020-04-20 2020-07-03
 United Kingdom hCoV-19/England/LOND-D615B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482217
 2020-04-20 2020-07-03
 United Kingdom hCoV-19/England/LOND-D614C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C9863T C14408T C18814T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482358
 2020-04-20 2020-07-03
 United States hCoV-19/USA/OR-PROV-087/2020
 C8782T C17747T A17858G C18060T T28144C G29688T

EPI_ISL_482359
 2020-04-20 2020-07-03
 United States hCoV-19/USA/OR-PROV-088/2020
 C241T C3037T C11563T C14408T C18877T A23403G T23986C G25563T

EPI_ISL_482360
 2020-04-20 2020-07-03
 United States hCoV-19/USA/OR-PROV-089/2020
 G11083T C14805T TTTGAA20407- TTA21991- C25624T G26144T C26340T C29614T

EPI_ISL_482361
 2020-04-20 2020-07-03
 United States hCoV-19/USA/OR-PROV-090/2020
 C241T C3037T C3176T G11083T C11563T C14408T C18877T A23403G G25563T

EPI_ISL_482362
 2020-04-20 2020-07-03
 United States hCoV-19/USA/OR-PROV-091/2020
 C241T C3037T C14408T A20268G A23403G C29370G

EPI_ISL_482363
 2020-04-20 2020-07-03
 United States hCoV-19/USA/OR-PROV-092/2020
 C241T TGGTCATGTTATGGT508- C1059T C3037T T3312C C14408T A23403G G25563T

EPI_ISL_482364
 2020-04-20 2020-07-03
 United States hCoV-19/USA/OR-PROV-093/2020
 C241T C1059T C3037T T3312C C14408T A23403G G25563T

EPI_ISL_482365
 2020-04-20 2020-07-03
 United States hCoV-19/USA/OR-PROV-094/2020
 C241T C3037T C14408T A20268G A23403G C29370G

EPI_ISL_482969
 2020-04-20 2020-07-06
 United States hCoV-19/USA/MN-MDH-1248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C26625T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483252
 2020-04-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0607-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483253
 2020-04-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0608-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T T19315C A20268G T21951C A23403G T24076C C28854T

EPI_ISL_483255
 2020-04-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0610-IPL/2020
 ATTA1- C241T C379A C1059T C3037T G4657A A13695C C14408T G21578T A23403G G25563T

EPI_ISL_483257
 2020-04-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0612-SAN/2020
 C241T C3037T C4582T C8175T C14408T A20268G A23403G

EPI_ISL_483456
 2020-04-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1002-SAN/2020
 ATTA1- C241T C3037T C4582T C8175T C14408T A20268G A23403G

EPI_ISL_483463
 2020-04-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1015-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C379A C1059T C3037T G4657A A13695C C14408T G21578T A23403G G25563T

EPI_ISL_483469
 2020-04-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1023-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_483474
 2020-04-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1032-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_484410
 2020-04-20 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D158F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189A C241T A375G C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484411
 2020-04-20 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D15AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5340T C14408T A23403G G25429T G29553T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484412
 2020-04-20 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D15DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C17550T A19902G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484413
 2020-04-20 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D15E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6968T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485115
 2020-04-20 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26544532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G C23551T T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486191 MT750393
 2020-04-20 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1892/2020
 ATT1- C241T C936T C3037T T4711C A6709G C14408T C18570T A23122R A23403G GGG28881AAC

EPI_ISL_486192
 2020-04-20 2020-07-10
 United States hCoV-19/USA/CA-CZB-1893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C379A C1059T C1170T C3037T C14408T C22224T A23122R A23403G G25563T T25902W T25908W G25913S T27318A G28703T

EPI_ISL_486194 MT750394
 2020-04-20 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C3037T C4406Y T4711C A6709G C14408T C18570T A23122V A23403G T25902W T25908W G25913S GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486873
 2020-04-20 2020-07-12
 Senegal hCoV-19/Senegal/6427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T12017C C14408T C15324T A23403G AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_487559
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/LOND-D6425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11537G C14408T C21575T A23403G C26309Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487562
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/LOND-D63EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T A9437G T9708Y G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487568
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/LOND-D6443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G663K A4666G T6644C G11083T C14805T C16393T T19516G C23707T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487589
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/LOND-D6407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C186T C241T G2164A C3037T G11842T C14408T A23403G GGG28881AAC C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487606
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/LOND-D63CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C4331T T14091C C14408T A23403G C27673A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487630
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/LOND-D6434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4832T C14408T A23403G GAACTT26506- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487752
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C3037T A5280G C10798A C12053T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487755
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C3935G A7468G C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487799
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C3935G A7468G C16362T C23380T C29409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487835
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C6500T C9979T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487841
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9223T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487944
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14189T C14408T C17690T C18877T C23380Y A23403G T24923C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488188
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T G26144T C26542T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488205
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488213
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T T19839C G21898T A23403G A23796G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488234
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C988T C3037T C7600T G8287T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488263
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12ED7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T T16446C A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488274
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T394C C753T C3037T G10097A C10369T C14408T G22226T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488301
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E6EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488304
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G12243T G15406T A29814G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488330
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E5DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T T27919C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488381
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C13551T C14408T A18366G A23403G C23731T G28580T C28687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488384
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488403
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12ED6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1462T C3037T G10097A C14408T G14829T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488412
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E4B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18525T T19839C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488433
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7792C T13111C C14408T C14676T C17119T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488442
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EA94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488443
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489193
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-102C63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T G260A C3037T T8473C C14408T C19763T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489203
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C6213T C14408T A23403G C24865T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489209
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-102D8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9967T A10323G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489212
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-102C27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489218
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-102DAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C10377T C14408T C15933T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489220
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G C24865T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489226
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9967T A10323G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489316
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C17004T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489335
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-102F5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6865K C14408T G15438T G16475A A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489347
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-10343D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14362T C14408T A23403G GGG28881AAC C29514T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489356
 2020-04-20 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-103154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28109T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489710 MT757054
 2020-04-20 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0301/2020
 AT1- T490A C3177T C8782T T18144C T18736C C21575T C24034T T26729C C27998T G28077C T28144C AG29700GA CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_489873 EPI_ISL_491069
 2020-04-20 2020-07-14
 Romania hCoV-19/Romania/ROSV_3376/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G C22388T A23403G A29827T TG29829AT T29832C CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836T

EPI_ISL_490585
 2020-04-20 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C1D04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17010T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490608
 2020-04-20 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C7ACB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490630
 2020-04-20 2020-07-15
 United Kingdom hCoV-19/England/SHEF-CE2F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18713T A20323G A23403G GGG28881AAC C29109T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491514
 2020-04-20 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2940T C3037T C14408T A23403G T27580C TCA28252- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491527
 2020-04-20 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T C9598T C10582T C14408T G22309A G23311T A23403G G25563T C26461T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491575
 2020-04-20 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G T26715K C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491580
 2020-04-20 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A21081W A23403G A24862G T26715K G26720R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491663
 2020-04-20 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2987C C3037T A3215G C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491693
 2020-04-20 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C7423T C7869T T26715K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493472
 2020-04-20 2020-07-21
 United Kingdom hCoV-19/England/NORT-298AD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15906T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493564
 2020-04-20 2020-07-21
 United Kingdom hCoV-19/England/NOTT-11293C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21518T A23403G A28795G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493567
 2020-04-20 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C6312A C8660T A10948G G12917A C14408T C17649T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493733
 2020-04-20 2020-07-21
 United Kingdom hCoV-19/England/SHEF-D141B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494156
 2020-04-20 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-167DA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T4732C C14408T C16952Y A23403G G25429T G29474T A29903-

EPI_ISL_494173
 2020-04-20 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-167EEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_494212
 2020-04-20 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1681F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T G1589R C3037T C14408T C18814T A23403G G25429T G29474T

EPI_ISL_494224
 2020-04-20 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1682E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1589R C3037T C14408T A23403G G25429T G29474T

EPI_ISL_494273
 2020-04-20 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1686D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T C14741T A23403G C29200T

EPI_ISL_494308
 2020-04-20 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168946/2020
 ATTAAAGGTTTATA1- C241T C3037T T4732C C14408T A23403G G25429T G29474T

EPI_ISL_494309
 2020-04-20 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168964/2020
 ATTAAAGGTTTATACC1- C241T C3037T T5465C C5512T C14408T G21624T A23403G G24102A GGG28881AAC T28963G

EPI_ISL_494338
 2020-04-20 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168B8C/2020
 ATTAAAG1- C241T C3037T C14408T A23403G

EPI_ISL_494368
 2020-04-20 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168DE0/2020
 ATTAAAGGTT1- C21Y C241T C3037T A7921R C14408T A23403G GGG28881AAC

EPI_ISL_494594
 2020-04-20 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1425/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494625
 2020-04-20 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494626
 2020-04-20 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1503/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T G17014T A23403G G24608T G25563T

EPI_ISL_494745
 2020-04-20 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494746
 2020-04-20 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G12718A C14408T A20268G A23403G T24076C C28854T

EPI_ISL_495082
 2020-04-20 2020-07-22
 United Kingdom hCoV-19/England/WSFT-25C1686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T T11638C C14408T A23403G GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495096
 2020-04-20 2020-07-22
 United Kingdom hCoV-19/England/WSFT-25C16A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T C14408T C21691T A23403G C25047T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495098
 2020-04-20 2020-07-22
 United Kingdom hCoV-19/England/BRIS-1331E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T CT14408TC A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495585
 2020-04-20 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S001114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_496369
 2020-04-20 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A8805C C11575T C14408T C16887T C19029T A20268G A23403G C28854T

EPI_ISL_496522
 2020-04-20 2020-07-24
 India hCoV-19/India/BJMC_1769/2020
 ATTAAAGGTTTATACC1- A29- C241T C313T C1997T C3037T C5700A C14408T G20145T A23403G GGG28881AAC TG29867- AC29869GA

EPI_ISL_496551
 2020-04-20 2020-07-24
 India hCoV-19/India/BJMC_2442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C5700A C14408T C22224T A23403G G24603A GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_497888
 2020-04-20 2020-07-25
 India hCoV-19/India/BJMC_1760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C313T C3037T C5700A C12459T C14408T G18449T A23403G T25288- GGG28881AAC C29274T G29868-

EPI_ISL_501152
 2020-04-20 2020-07-30
 United States hCoV-19/USA/WA-UW-7764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C36T C241T C1059T C3037T T8883C TT8885AA AGG13512TTA TA14222GC C14408T C16859T A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501602
 2020-04-20 2020-07-31
 United Kingdom hCoV-19/England/WSFT-25C15F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10712T C14408T G18028T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501613
 2020-04-20 2020-07-31
 United Kingdom hCoV-19/England/WSFT-25C161D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19488T A23403G GGG28881AAC C29409Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507937
 2020-04-20 2020-08-03
 United States hCoV-19/USA/MN-MDH-1348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G5017T C8782T C10956T G14350T C17747T A17858G C18060T A24694T T28144C C28310A G28812T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_507938
 2020-04-20 2020-08-03
 United States hCoV-19/USA/MN-MDH-1349/2020
 ATTA1- G5017T C8782T G14350T A17858G C18060T A24694T T28144C C28310A G28812T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_507939
 2020-04-20 2020-08-03
 United States hCoV-19/USA/MN-MDH-1350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G5017T C8782T G14350T C17747T A17858G C18060T A24694T T28144C C28310A G28812T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_507940
 2020-04-20 2020-08-03
 United States hCoV-19/USA/MN-MDH-1351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G5017T C8782T G14350T C17747T A17858G C18060T A24694T T28144C C28310A G28812T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_507941
 2020-04-20 2020-08-03
 United States hCoV-19/USA/MN-MDH-1352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G5017T C8782T G14350T A17858G C18060T A24694T T28144C C28310A G28812T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_508341
 2020-04-20 2020-08-04
 India hCoV-19/India/IK12/2020
 C241T C3037T G11410A C14408T G15451A G22021T G22343A A23403G T29595C G29744A G29868A

EPI_ISL_508342
 2020-04-20 2020-08-04
 India hCoV-19/India/IK13/2020
 A4- C241T C3037T G3351T C14408T A23403G G29868A

EPI_ISL_511505
 2020-04-20 2020-08-08
 Portugal hCoV-19/Portugal/PT0956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC C29025T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_513158
 2020-04-20 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH444/2020
 C241T C3037T C5147T C5884T AG5967TA C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513159
 2020-04-20 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH446/2020
 C241T C3037T T3178A C14408T C18877T A23403G G25563T C26735T C29580T

EPI_ISL_514062
 2020-04-20 2020-08-14
 United States hCoV-19/USA/UN-CDC-7404/2020
 C241T C3037T A7929G C14408T C20233T T22270Y TT22274WK A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514063
 2020-04-20 2020-08-14
 United States hCoV-19/USA/UN-CDC-7413/2020
 C241T C3037T A7929G C14408T T22270Y TT22274WK A23403G C25413Y GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514064
 2020-04-20 2020-08-14
 United States hCoV-19/USA/UN-CDC-7414/2020
 C241T C3037T C4815Y A12746R C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514065
 2020-04-20 2020-08-14
 United States hCoV-19/USA/UN-CDC-7419/2020
 C241T C3037T C14408T G18505R A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514066
 2020-04-20 2020-08-14
 United States hCoV-19/USA/UN-CDC-7425/2020
 C241T C3037T G3661T A7929G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514067
 2020-04-20 2020-08-14
 United States hCoV-19/USA/UN-CDC-7430/2020
 C241T C3037T A7929G C14408T C23127Y A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514068
 2020-04-20 2020-08-14
 United States hCoV-19/USA/UN-CDC-7432/2020
 C241T C3037T G3251K G3661T A4826R A7929G C9502Y C12003Y C14408T T18895Y A23403G C24117Y C24651Y C26405Y C27982Y C28748Y GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514069
 2020-04-20 2020-08-14
 United States hCoV-19/USA/UN-CDC-7433/2020
 C241T C3037T A7929G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_515386
 2020-04-20 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0115/2020
 ATTA1- C241T C3037T C14408T A23403G

EPI_ISL_515387
 2020-04-20 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0116/2020
 ATT1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515388
 2020-04-20 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0117/2020
 ATTA1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_515389
 2020-04-20 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0118/2020
 ATTA1- C241T C379A C1059T C3037T C12596T C14408T A23403G G25563T

EPI_ISL_515390
 2020-04-20 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0119/2020
 ATTAAA1- C241T C379A C1059T C3037T C14408T A23403G G25563T C29769T

EPI_ISL_515542
 2020-04-20 2020-08-19
 Brazil hCoV-19/Brazil/SP-136/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25C C241T C3037T C14408T G17395A C18348T A23403G C24904T G25088T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_516491 MT929017
 2020-04-20 2020-08-21
 United States SARS-CoV-2/human/USA/IL-UW-1065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5183T C14408T A23403G G25563T G28878T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522855
 2020-04-20 2020-08-26
 Italy hCoV-19/Italy/VR-IZSVe-101-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T A5053G C11322T C14408T C14676T C21575T A23403G TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_523174
 2020-04-20 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G199A C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523429
 2020-04-20 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C T13977C C14408T G16914T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523483
 2020-04-20 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C14408T T14775A C16575T T19839C A23403G GGG28881AAC C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523692
 2020-04-20 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523989
 2020-04-20 2020-08-27
 Brazil hCoV-19/Brazil/SP-208/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12053T T12925C C14408T A21766G A23403G G25088T G25471T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_524049
 2020-04-20 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-7388V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T A3523C T11212C C12809T C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524879
 2020-04-20 2020-08-28
 United States hCoV-19/USA/MD-MDH-0151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7600T C14408T C15324T A23403G A29896G A29898G

EPI_ISL_525686
 2020-04-20 2020-08-31
 United States hCoV-19/USA/NY-Wadsworth-57118-01/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C10188T C11916T C14408T C18570T C18998T A23403G G25563T G29540A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526231
 2020-04-20 2020-09-01
 Hungary hCoV-19/Hungary/MH-975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3426T C3686T T10567C C14408T A23403G G25074T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527733
 2020-04-20 2020-09-04
 United States hCoV-19/USA/MN-CDC-6572/2020
 C8782T C17747T A17858G C18060T T20273A A24694T C26461T C27881T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527861
 2020-04-20 2020-09-05
 Brazil hCoV-19/Brazil/SP-298/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C9857T C12053T C14408T A16739C A22681T A23403G G25088T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861CACT

EPI_ISL_528405
 2020-04-20 2020-09-07
 United Kingdom hCoV-19/England/20172055104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8208Y C14408T C16338Y A23403G C25635T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_530072
 2020-04-20 2020-09-10
 Spain hCoV-19/Spain/MD-LP73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T A22151G G25979T T28144C C28657T C28863T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530215 MT997737
 2020-04-20 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G1463A C3037T G7557A C8818T C14408T A20284G C22477T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_534829
 2020-04-20 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2F5B/2020
 C241T C3037T C3373A C3923A T9588C C11195T C14408T C18252T G19455T A23403G GGG28881AAC

EPI_ISL_537478
 2020-04-20 2020-09-16
 United States hCoV-19/USA/CA-UCLA-13/2020
 A1- C241T C379A C1059T C3037T C14408T A23403G G25563T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_539797
 2020-04-20 2020-09-20
 United States hCoV-19/USA/WY-WYPHL-20009722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T GTCATGTTA510- T582C C1059T C3037T C14408T C15557T A23403G G25563T T25950C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540436 MW023392
 2020-04-20 2020-09-21
 United States SARS-CoV-2/human/USA/WI-CDC-8093/2020
 C241T C1059T C3037T C5183T C14408T A23403G G25563T G28878T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_541357
 2020-04-20 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C643T C3037T C14408T G19684T C21910T A22720G A23403G C26873Y T27299C A28119G GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541358
 2020-04-20 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2343/2020
 ATTAA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541359
 2020-04-20 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2369/2020
 A1G A4T C241T C1684T C3037T C14408T G15093A C22993T A23403G G25088T GGG28881AAC TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_541360
 2020-04-20 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2376/2020
 ATTA1- C241T C3037T A9922G C14408T A23403G T27299C GGG28881AAC T29148C TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_541361
 2020-04-20 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2377/2020
 A1CCTA AA5CC GT8- C241T C3037T C14408T G16968T C17733T C20178T A23403G T27299C GGG28881AAC T29148C TATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29789-

EPI_ISL_541388
 2020-04-20 2020-09-22
 Brazil hCoV-19/Brazil/SE-6579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C10778T C14408T G19207A A23403G C23683T C27059T T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541389
 2020-04-20 2020-09-22
 Brazil hCoV-19/Brazil/SE-6583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C5284T C11916T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541395
 2020-04-20 2020-09-22
 Brazil hCoV-19/Brazil/SE-6607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C981T C3037T C14408T C15324T C16428T A23403G CTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29774-

EPI_ISL_541396
 2020-04-20 2020-09-22
 Brazil hCoV-19/Brazil/SE-6608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C981T C3037T C14408T C15324T C16428T A23403G CAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29762-

EPI_ISL_542601
 2020-04-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-1236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1820A C3037T C4931A C14408T C15026T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542613
 2020-04-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-1252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2388T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542658
 2020-04-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-1338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3483A A5742G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542792
 2020-04-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-1723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A T2319G C3177T C6040T C8782T C8950T G12478A T18736C T19713C C24034T T26729C A26927G G28077C T28144C C28744T C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542797
 2020-04-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-1728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T G20718T A23403G A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542855
 2020-04-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-1807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1274T C3037T C3775T C10319T C14408T C16376T G23012C A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542905
 2020-04-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-1926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4113T C14408T G18997T A23403G G25563T C26447T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542907
 2020-04-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-1931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5203T C13860T C14408T C18747T A23403G G25563T C26408T C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545299
 2020-04-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18055A G19525T A23403G C28291T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545894
 2020-04-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545895
 2020-04-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T C18601T A23403G T24982C G25563T C27964T T28852C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560806 MW048997
 2020-04-20 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0193/2020
 ATTAAAGGTTTATACC1- T490A C3177T C6040T C8782T G12478A T18736C G20995T C24034T T26729C G28077C T28144C C28896G A29700G AAA29879TTT A29884G

EPI_ISL_568947
 2020-04-20 2020-10-02
 France hCoV-19/France/IHU-0726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T G6476T C7644T C14408T C18326T A18366G A23403G G25563T C28201T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

GWHAORG01000001
 2020-04-20 2020-09-11
 China SARS-CoV-2/human/CHN/Beijing-P3.2/2020
 C241T C3037T C14408T T16254C A23403G

LR793257
 2020-04-20 2020-04-20
 France IHUCOVID-0006
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT594402 MT594401
 2020-04-20 2020-05-18
 France SARS-CoV-2/human/FRA/BavPat1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T22303G A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

MT627750
 2020-04-20 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S606/2020
 ATTAAAGGTTT1- G4148T C8782T C17747T A17858G C18060T G21893A T28144C C29836T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627755
 2020-04-20 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S607/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T C18657T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628042
 2020-04-20 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S651/2020
 A1- C241T T833C C1059T C3037T C14408T C17163T C23248T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628053
 2020-04-20 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S650/2020
 ATTAAAG1- C1593T C8782T G15406A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628075
 2020-04-20 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S652/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T C28826T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628078
 2020-04-20 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S662/2020
 ATT1- C241T C3037T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT682732
 2020-04-20 2020-07-01
 Italy SARS-CoV-2/human/ITA/Naples/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T22099C A23403G G25340C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

MT810502
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1425-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810509
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1502-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810510
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1503-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G24608T G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810550
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1688-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810551
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1689-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G12718A C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810782
 2020-04-20 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1708-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T A8805C C11575T C14408T C16887T C19029T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810949
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0235-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810980
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0358-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A16797G A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811013
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0407-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811014
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0408-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1900G C3037T C10778T C14408T C20555A A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811265
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0607-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811266
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0608-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T T19315C A20268G T21951C A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811268
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0610-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A A13695C C14408T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811270
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0612-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4582T C8175T C14408T A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811463
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1002-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4582T C8175T C14408T A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811470
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1015-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A A13695C C14408T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811476
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1023-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811481
 2020-04-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1032-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT880873
 2020-04-20 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7404/2020
 C241T C3037T A7929G C14408T C20233T T22270Y TT22274WK A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT880874
 2020-04-20 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7413/2020
 C241T C3037T A7929G C14408T T22270Y TT22274WK A23403G C25413Y GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT880875
 2020-04-20 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7414/2020
 C241T C3037T C4815Y A12746R C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT880876
 2020-04-20 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7425/2020
 C241T C3037T G3661T A7929G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT880877
 2020-04-20 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7433/2020
 C241T C3037T A7929G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT882310
 2020-04-20 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7419/2020
 C241T C3037T C14408T G18505R A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT882311
 2020-04-20 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7430/2020
 C241T C3037T A7929G C14408T C23127Y A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT882312
 2020-04-20 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7432/2020
 C241T C3037T G3251K G3661T A4826R A7929G C9502Y C12003Y C14408T T18895Y A23403G C24117Y C24651Y C26405Y C27982Y C28748Y GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT937814
 2020-04-20 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7600T C14408T C15324T A23403G A29896G A29898G

MT956642
 2020-04-20 2020-09-03
 Italy SARS-CoV-2/human/ITA/Milan-ICCS-1-2/2020
 C241T C3037T C14408T A23403G -25692TGA C27367T GGG28881AAC

MT967983
 2020-04-20 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6572/2020
 C8782T C17747T A17858G C18060T T20273A A24694T C26461T C27881T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MW001243
 2020-04-20 2020-09-14
 United States SARS-CoV-2/human/USA/222-OP-TCE/2020
 C241T C1059T C3037T C11916T C14408T C18998T A21526G A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_434488
 2020-04-21 2020-04-29
 Luxembourg hCoV-19/Luxembourg/LNS1673015/2020
 C241T C2416T C3037T G8371T C14408T G16968A A23403G C24106T G25563T A28860T AAAAAAAAA29895-

EPI_ISL_434674
 2020-04-21 2020-04-30
 Sweden hCoV-19/Sweden/20-07572/2020
 C241T C1059T C3037T C14408T C21721T T21994C A23403G G25563T A27020G

EPI_ISL_435048 MT428554
 2020-04-21 2020-05-02
 Kazakhstan SARS-CoV-2/human/KAZ/NCB-5/2020
 G2448A C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_435394
 2020-04-21 2020-05-04
 United States hCoV-19/USA/WI-GMF-01455/2020
 C241T C1059T C1919T C3037T C6363T C9866T C14408T A14747G A20755C G21372T AA21550MW A23403G G25563T

EPI_ISL_435395
 2020-04-21 2020-05-04
 United States hCoV-19/USA/WI-GMF-01481/2020
 C241T C1059T C3037T C11224T C14408T C15654T A23403G C24138T G25563T

EPI_ISL_435397
 2020-04-21 2020-05-04
 United States hCoV-19/USA/WI-GMF-01535/2020
 C241T C1059T C1919T C3037T C6363T C9866T C14408T A14747G A20755C G21372T A23403G G25563T

EPI_ISL_435497
 2020-04-21 2020-05-05
 United States hCoV-19/USA/NY-NYUMC430/2020
 C241T GTT669- C1059T C3037T C14408T A23403G A25449G G25563T G27962T

EPI_ISL_435539
 2020-04-21 2020-05-05
 United States hCoV-19/USA/NY-NYUMC474/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T

EPI_ISL_435540
 2020-04-21 2020-05-05
 United States hCoV-19/USA/NY-NYUMC475/2020
 C241T GTT669- C1059T C3037T C14408T A23403G A25449G G25563T G27962T

EPI_ISL_435541
 2020-04-21 2020-05-05
 United States hCoV-19/USA/NY-NYUMC476/2020
 C241T C3037T A6507C A6561G C6701T C14408T C18877T A23403G G25563T

EPI_ISL_435692
 2020-04-21 2020-05-05
 Singapore hCoV-19/Singapore/87/2020
 ATTAAAGGTTTATACCT1- C6310A C6312A G6463T G11083T C13730T C19524T C23929T G26763T C26894T C28311T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_435693
 2020-04-21 2020-05-05
 Singapore hCoV-19/Singapore/88/2020
 ATTAAAGGTTTATACCT1- C6310A C6312A G6463T G11083T C13730T C19524T C23929T G26763T C26894T C28311T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29730-

EPI_ISL_436613 MT706426
 2020-04-21 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C19970T A20650C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436614 MT706427
 2020-04-21 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T A7837C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436640 MT706451
 2020-04-21 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1427T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437068 MT449659
 2020-04-21 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1068/2020
 ATTAAA1- C11563T A15851M T15922Y C25692T

EPI_ISL_437073 MT449664
 2020-04-21 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1073/2020
 ATTAAAGGTTTA1- G10617A G22225T C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_437074 MT449665
 2020-04-21 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1074/2020
 ATTAAA1- T15922Y C24334Y C25692T A27860G C29358T

EPI_ISL_437572
 2020-04-21 2020-05-11
 United States hCoV-19/USA/CA-SR0232/2020
 C241T G943A C3037T A9419G C14408T A20268G A23403G G28003T C28854T

EPI_ISL_438207
 2020-04-21 2020-05-12
 United States hCoV-19/USA/WA-S654/2020
 G1401A C2675T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_438209
 2020-04-21 2020-05-12
 United States hCoV-19/USA/WA-S656/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A A29700G

EPI_ISL_438210
 2020-04-21 2020-05-12
 United States hCoV-19/USA/WA-S657/2020
 C241T C1059T C3037T C10582T C14408T A23403G G25563T

EPI_ISL_438211
 2020-04-21 2020-05-12
 United States hCoV-19/USA/WA-S658/2020
 C3311A C8782T A13782G G17671T C17747T A17858G C18060T T28144C

EPI_ISL_438212
 2020-04-21 2020-05-12
 United States hCoV-19/USA/WA-S659/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A A29700G

EPI_ISL_438213
 2020-04-21 2020-05-12
 United States hCoV-19/USA/WA-S660/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29553A A29700G

EPI_ISL_438214
 2020-04-21 2020-05-12
 United States hCoV-19/USA/WA-S661/2020
 C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T

EPI_ISL_438216
 2020-04-21 2020-05-12
 United States hCoV-19/USA/WA-S663/2020
 G1401A C8782T C17747T A17858G C18060T T28144C C29420T

EPI_ISL_438220
 2020-04-21 2020-05-12
 United States hCoV-19/USA/WA-S667/2020
 C241T C3037T A5538T C14408T G16813A A23403G T25783C GGG28881AAC

EPI_ISL_438562
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8108F/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_438581
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81E1C/2020
 A142T C241T C3037T C14408T A23403G C27813T AG28877TC GGG28881AAC

EPI_ISL_438583
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81E3A/2020
 C241T C3037T C14408T C19366T C22550T A23403G GGG28881AAC

EPI_ISL_438597
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81F46/2020
 C241T C1059T A1691G C3037T C14408T T18863C A23403G G25563T

EPI_ISL_438600
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81F82/2020
 A2480G C2558T C6026T A8812T G11083T A11714G C14805T G23402A G26144T

EPI_ISL_438601
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81F91/2020
 C241T C3037T T5521C C6558T G9130T C13730T C14408T A23403G G25429T G26529T

EPI_ISL_438610
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82024/2020
 C241T C3037T C8092T C14408T G16206T C16859T A23403G A28492G GGG28881AAC

EPI_ISL_438618
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-820AC/2020
 C241T C2940T C3037T C14408T C21648T A23403G

EPI_ISL_438619
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-820CA/2020
 C241T C3037T C14408T A23403G C25378T GGG28881AAC

EPI_ISL_438620
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82103/2020
 A2480G C2558T G4185A C9438T G11083T A11590G C14805T C16332T G26144T C29013T

EPI_ISL_438621
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82121/2020
 C241T C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_438622
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82130/2020
 C241T C3037T T10150C C14408T A23403G C25350T

EPI_ISL_438623
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8214F/2020
 C241T C1514T C3037T C3373A C11195T C14408T C15216T G22335T A23403G C28775T GGG28881AAC

EPI_ISL_438625
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8217C/2020
 C241T C3037T G11222T C14408T T18083C A23403G GGG28881AAC

EPI_ISL_438630
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-821C7/2020
 C241T C3037T C14408T A23403G C23709T G27281T GGG28881AAC

EPI_ISL_438631
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-821E5/2020
 C241T C3037T C5178T C14408T A23403G GGG28881AAC

EPI_ISL_438633
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82200/2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_438981
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2803/2020
 C241T C3037T C14408T C22879A A23403G

EPI_ISL_438984
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2812/2020
 C241T C3037T C5526T C14408T A23403G A27548G

EPI_ISL_439170
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2144/2020
 C241T C3037T C14408T T19248C A20268G A23403G

EPI_ISL_439173
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2234/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_439174
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2242/2020
 C241T C3037T T10168C C14408T A20268G A23403G C28854T

EPI_ISL_439175
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2243/2020
 C241T C3037T G3689A T11660A C14408T A23403G A24439G G25429T A28841G

EPI_ISL_439176
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2244/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_439178
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2268/2020
 C241T C3037T C14408T A20268G A23403G C27476T C28854T G29543C

EPI_ISL_439180
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2290/2020
 C241T C3037T C14408T T19248C A20268G A23403G

EPI_ISL_439182
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2335/2020
 C241T C3037T C4551T T5161A C14408T T17126C A20268G A23403G G29742T

EPI_ISL_439183
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2337/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_440864
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9B626/2020
 C241T C3037T A10181C C14408T T19839C A23403G GGG28881AAC

EPI_ISL_440873
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9B723/2020
 C241T C3037T C13862T C14408T A23403G C27294T G28027T C28836T

EPI_ISL_440878
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9B83F/2020
 C241T C3037T C5144T C14408T A20268G A23403G C28854T

EPI_ISL_440892
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9B9C3/2020
 C241T C3037T C6582T C7321T T11601C C14408T A23403G GGG28881AAC

EPI_ISL_440897
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9BA84/2020
 C241T C3037T C14408T C16616T A23403G GGG28881AAC C29614T

EPI_ISL_440903
 2020-04-21 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9BBFA/2020
 C241T C3037T C13862T C14408T A23403G C27294T G28027T C28836T

EPI_ISL_445067
 2020-04-21 2020-05-14
 Luxembourg hCoV-19/Luxembourg/LNS9063347/2020
 C241T C1059T A2499C C3037T C4891T C14408T C21772T A23403G G25563T T27384C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_445074
 2020-04-21 2020-05-14
 Luxembourg hCoV-19/Luxembourg/LNS2156711/2020
 A187G C241T C3037T C14408T G17014T G20991A C22480T A23403G T25436A AAG25438CTC A25448C C26895T AAA27135TTT T27139C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_445236
 2020-04-21 2020-05-15
 Sweden hCoV-19/Sweden/20-07651/2020
 C241T C1059T C3037T C5157T C14408T A23403G G24368T G25563T

EPI_ISL_445237
 2020-04-21 2020-05-15
 Sweden hCoV-19/Sweden/20-07653/2020
 C241T C1059T T1936C C3037T C10626T C14408T A23403G G24368T G25563T

EPI_ISL_447453
 2020-04-21 2020-05-17
 Israel hCoV-19/Israel/130711116/2020
 C3037T C14408T A23403G AAAAAAAAAAAA29892-

EPI_ISL_448197
 2020-04-21 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C17012T G20477T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_448198
 2020-04-21 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_448205
 2020-04-21 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G11083T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_448983
 2020-04-21 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6E42/2020
 AT1- C241T C2940T C3037T C14408T C21306T A23403G C25452T G28975T C29870S

EPI_ISL_448988
 2020-04-21 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6EBB/2020
 ATTAAAGG1- C241T C1684T C3037T C12915T C14408T G14829T A20268G G21255T A23403G

EPI_ISL_448991
 2020-04-21 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6F03/2020
 ATTA1- C241T C3037T C9977A C13694T C14408T G17608T A23403G G24197T G25429T C29870H

EPI_ISL_449032
 2020-04-21 2020-05-19
 United Kingdom hCoV-19/England/NORW-E73CA/2020
 C241T C3037T C14120T C14408T A23403G GGG28881AAC

EPI_ISL_449190
 2020-04-21 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449192
 2020-04-21 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G24348C C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449282
 2020-04-21 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4204/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_449284
 2020-04-21 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4223/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_449286
 2020-04-21 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4254/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_450192
 2020-04-21 2020-05-20
 United States hCoV-19/USA/CA-SR0348/2020
 C21T C241T T658C C1473T C3037T G13124A C14408T A23403G GGG28881AAC G29473A CATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29724-

EPI_ISL_450248
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7318V/2020
 C241T G1401A C3037T C14408T A23403G G27415T GGG28881AAC

EPI_ISL_450249
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7319V/2020
 C241T G1401A C3037T C5211T C14408T A23403G C25380T C26447T G27415T GGG28881AAC

EPI_ISL_450250
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7321V/2020
 C241T G1401A C3037T C14408T C19961T G22139T A23403G G27415T GGG28881AAC

EPI_ISL_450258
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7553S/2020
 C241T C3037T C14408T A20268G A23403G A28692C GGG28881AAC

EPI_ISL_450259
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7555S/2020
 C241T C3037T C14408T C22551T A23403G GGG28881AAC

EPI_ISL_450260
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7557S/2020
 C241T C3037T C14408T A20268G A23403G A28692C GGG28881AAC

EPI_ISL_450261
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7581S/2020
 C241T C3037T C14408T A20268G A23403G GGG28881AAC

EPI_ISL_450262
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7594S/2020
 C241T C3037T C14408T A20268G A23403G GGG28881AAC

EPI_ISL_450263
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7603S/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_450265
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7658S/2020
 C241T C3037T C11575T C14408T A23403G C26750T C28677T GGG28881AAC

EPI_ISL_450267
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7896S/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_450268
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8275S/2020
 C241T C3037T T11212C C14408T C18559T A23403G GGG28881AAC

EPI_ISL_450269
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8289S/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_450270
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8298S/2020
 C241T C3037T C14408T A20268G A23403G GGG28881AAC

EPI_ISL_450271
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8317S/2020
 C241T C3037T C9700T C14408T A23403G GGG28881AAC

EPI_ISL_450272
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8319S/2020
 C241T C3037T C14408T G18340A A20268G A23403G T29148C

EPI_ISL_450292
 2020-04-21 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8935S/2020
 C241T C3037T A7479G C14408T T17247C A23403G

EPI_ISL_452838 MT558689
 2020-04-21 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8140T C14408T C15324T A21137G G21334T A23403G C23635T G25471C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_452851 MT558702
 2020-04-21 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0282/2020
 ATTAAAG1- G8A C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C C29077T G29540A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_452853 MT558704
 2020-04-21 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0284/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C C29077T G29540A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_452854 MT558705
 2020-04-21 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0285/2020
 AT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C C29077T G29540A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_452855 MT558706
 2020-04-21 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0286/2020
 A1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C C29077T G29540A

EPI_ISL_452856 MT558707
 2020-04-21 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0287/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C C29077T G29540A

EPI_ISL_453083
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/Scotland/CVR2889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C5259T G11083T C12710T T16456A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_453084
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/Scotland/CVR2890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G11083T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_453085
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/Scotland/CVR2892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G11083T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_453088
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/Scotland/CVR2969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7936T G10097A C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_453114
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB4233/2020
 C241T C784T C3037T C10798A C13862T C14408T A23403G T28245C C28836T

EPI_ISL_453115
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB4234/2020
 C241T C784T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_453116
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB4235/2020
 C241T C784T C3037T C10798A C13862T C14408T A23403G C28836T G29777A

EPI_ISL_453545
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/NORW-E6DAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C8367T C14408T C19524T A23403G GGG28881AAC

EPI_ISL_453546
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/NORW-E6E33/2020
 C241T A476G C3037T C10507T C14408T A16638G G17893T C18877T A23403G G25563T

EPI_ISL_453553
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/NORW-E7157/2020
 C241T C313T G1820A C3037T C6541T C14408T A23403G GGG28881AAC A29242G

EPI_ISL_453704
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C2D6D/2020
 C241T C1190T C3037T C14408T A23403G T26182C GGG28881AAC

EPI_ISL_453717
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C5C4F/2020
 C241T C3037T C14408T G18803T C21614T A23403G

EPI_ISL_453722
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C724B/2020
 C241T C2940T C3037T C10341T C14408T C19524T T21467C A23403G T28693C

EPI_ISL_453729
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C88A2/2020
 C241T C5878T C7735T C10645T A11839G C14408T T19839C C21575T A23403G GGG28881AAC

EPI_ISL_453737
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CA4BB/2020
 C241T C3037T C14408T G22427A A23403G G27441T GGG28881AAC

EPI_ISL_453740
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CB292/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_453744
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CB502/2020
 C241T C3037T C14408T A23403G C27434T GGG28881AAC

EPI_ISL_453748
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CCE7F/2020
 G431A ATG1605- G18910T C20270T A29683T

EPI_ISL_453752
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CD807/2020
 C241T G7736A C14408T C15324T A23403G

EPI_ISL_453755
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CDD17/2020
 C241T C3037T A11839G C14408T T19839C G23009T A23403G G28362T GGG28881AAC

EPI_ISL_453758
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CF6ED/2020
 C241T C1059T C1214T C2536T C3037T C14408T C16260T A23403G G24368T G25563T

EPI_ISL_453759
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CF8BA/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_453765
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/SHEF-D1369/2020
 G208T C241T C3037T C4002T G10097A C13536T C14408T G21593T A23403G C23731T C25546T C27513T GGG28881AAC

EPI_ISL_453776
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/SHEF-D2E2B/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_453777
 2020-04-21 2020-05-27
 United Kingdom hCoV-19/England/SHEF-D2F82/2020
 C241T C3037T C14408T C21614T A23403G

EPI_ISL_454281
 2020-04-21 2020-05-28
 Portugal hCoV-19/Portugal/PT0558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7732T G8137T C14408T G15672T A23403G T26552G C27920T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454566
 2020-04-21 2020-05-28
 India hCoV-19/India/NIV-QC-795/2020
 C241T C3037T C3634T C14408T C15324T C15720T A23403G

EPI_ISL_454584
 2020-04-21 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/22044/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454586
 2020-04-21 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/22517/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_454645 MT532436
 2020-04-21 2020-05-28
 United States SARS-CoV-2/human/USA/CT-CDC-8001/2020
 T141C T181C C241T C1059T T2851C C3037T G10905T C11916T C14408T C18998T C19952T T20537C A23403G G25563T G29540A T29821C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_454832
 2020-04-21 2020-05-29
 India hCoV-19/India/SMSCOV161/2020
 C6312A G11083T C13730T C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_455651
 2020-04-21 2020-06-01
 India hCoV-19/India/S21/2020
 C241T C2388T C3037T C9430T C14408T A23403G C26456T

EPI_ISL_455652
 2020-04-21 2020-06-01
 India hCoV-19/India/S22/2020
 C241T C697T C3037T G3514T G12989A C14408T A23403G

EPI_ISL_455653
 2020-04-21 2020-06-01
 India hCoV-19/India/S23/2020
 G94T C241T C3037T C8950T C14408T A23403G G23821A G26730T

EPI_ISL_455654
 2020-04-21 2020-06-01
 India hCoV-19/India/S24/2020
 C241T C3037T G4904T C14408T A23403G

EPI_ISL_456109
 2020-04-21 2020-06-01
 United States hCoV-19/USA/NY-NYUMC836/2020
 C241T C1059T C3037T C14408T C19145T A23063T A23403G G25563T

EPI_ISL_456938
 2020-04-21 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4226/2020
 C241T C3037T G6461T C12915T C14408T A20268G A23403G G27987T C28775T C28854T

EPI_ISL_457125
 2020-04-21 2020-06-02
 United Kingdom hCoV-19/England/EXET-135A03/2020
 ATG1605- G14335T

EPI_ISL_457256
 2020-04-21 2020-06-02
 United Kingdom hCoV-19/England/EXET-136C0C/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_458255
 2020-04-21 2020-06-04
 United States hCoV-19/USA/CA-SR0372/2020
 A39C C241T C1059T C3037T A8252G C14408T A23403G G25563T

EPI_ISL_458266
 2020-04-21 2020-06-04
 United States hCoV-19/USA/CA-SR0387/2020
 C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_458272
 2020-04-21 2020-06-04
 United States hCoV-19/USA/CA-SR0399/2020
 C241T C2395T C3037T A10042T C14408T C19113T A20268G G21786T A23403G C28854T

EPI_ISL_458280
 2020-04-21 2020-06-04
 United States hCoV-19/USA/CA-SR0410/2020
 C241T C3037T C14408T G16853T A23403G T26960C GGG28881AAC

EPI_ISL_458282
 2020-04-21 2020-06-04
 United States hCoV-19/USA/CA-SR0412/2020
 C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_459977
 2020-04-21 2020-06-05
 Morocco hCoV-19/Morocco/6899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459983
 2020-04-21 2020-06-05
 Morocco hCoV-19/Morocco/6905/2020
 ATTAAAGGTTTATACCTTCC1- C222T C241T C3037T C3373A G14028T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_460776
 2020-04-21 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460785
 2020-04-21 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T C18828T A23403G C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461295
 2020-04-21 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C11109T C12415T C14408T T19159G A23403G G25563T G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461589
 2020-04-21 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR2920/2020
 C241T G2534A C3037T C14408T A23403G C25925T G26615T GGG28881AAC

EPI_ISL_461595
 2020-04-21 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR2929/2020
 C241T C3037T C14408T C22879A A23403G

EPI_ISL_462466
 2020-04-21 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7396/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C15324T G20164T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463095 MT609559
 2020-04-21 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0289/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C C29077T G29540A C29870A

EPI_ISL_463325
 2020-04-21 2020-06-10
 United States hCoV-19/USA/WA-S835/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C12053A C14408T A23403G G25563T G27948T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463326 MT642268
 2020-04-21 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S836/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463329 MT642161
 2020-04-21 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S839/2020
 AT1- C241T A2161G C3037T G7838T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_463331 MT642433
 2020-04-21 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S841/2020
 AT1- C8782T C14898T C17747T A17858G C18060T C25513A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463332 MT642343
 2020-04-21 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S842/2020
 ATTAAAGGTTTAT1- C8782T C14898T C17747T A17858G C18060T C25513A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_465350
 2020-04-21 2020-06-11
 United Kingdom hCoV-19/England/20172046004/2020
 C21T T1483C G5927A G11083T C14805T C23707T G24781C G26144T C28833T

EPI_ISL_465357
 2020-04-21 2020-06-11
 United Kingdom hCoV-19/England/20172054604/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_465389
 2020-04-21 2020-06-11
 United Kingdom hCoV-19/England/20174019404/2020
 A2480G C2558T C7011T G11405A C14805T G26144T C28869T

EPI_ISL_465390
 2020-04-21 2020-06-11
 United Kingdom hCoV-19/England/20174019504/2020
 C241T C313T C3037T T10129C C14408T G15004K A23403G C26873T G27382T GGG28881AAC

EPI_ISL_467794 MT680229
 2020-04-21 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0399/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_467795 MT680230
 2020-04-21 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A13318G C14408T A23403G G25563T T29867W C29870A

EPI_ISL_467796 MT680231
 2020-04-21 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0401/2020
 AT1- C241T C1059T C3037T A6124G C14408T A22798G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_467798 MT680232
 2020-04-21 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0403/2020
 ATTA1- C241T C1059T C3037T G6894T C14408T C20074A A23403G G25563T

EPI_ISL_467945
 2020-04-21 2020-06-15
 United States hCoV-19/USA/NY-AECOM-036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10851T C14408T A22320G A23403G G25563T C28789T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468089
 2020-04-21 2020-06-16
 United States hCoV-19/USA/OR-OHSU-0058/2020
 C241T C3037T C14408T G20980A A23403G

EPI_ISL_468484 MT628209
 2020-04-21 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1539/2020
 C241T C832T C3037T C13372Y C14408T A23403G A28779G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468549 MT628272
 2020-04-21 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1620/2020
 ATTA1- C4776T C8782T G11335T A12410R T14886C C17104T C17747T A17858G C18060T C27625T G28086K T28144C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_469529
 2020-04-21 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7115A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469560
 2020-04-21 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1274E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G10096A C14408T A23403G G25563T G26172T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469643
 2020-04-21 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7115A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470312
 2020-04-21 2020-06-18
 United Kingdom hCoV-19/England/CAMB-1AB482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470552 MT711873
 2020-04-21 2020-06-18
 United States SARS-CoV-2/human/USA/UT-02437/2020
 C241T C3037T A11782G C14408T A23403G C26256T C29668T

EPI_ISL_471173
 2020-04-21 2020-06-19
 Norway hCoV-19/Norway/2466/2020
 ATTAA1- C241T C2416T C3037T G8371T G13993T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_471215
 2020-04-21 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8016T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471242
 2020-04-21 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G509A C1059T C3037T C14408T A20638G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471794
 2020-04-21 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20773/2020
 C506T C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_471850
 2020-04-21 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20829/2020
 C241T C1059T C3037T A4903C A12841G C14408T C23248T A23403G G25563T C28695T

EPI_ISL_471857
 2020-04-21 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20836/2020
 C241T C3037T C6636T C14408T A23403G C25665Y G28325T G29405C

EPI_ISL_471891
 2020-04-21 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20870/2020
 C241T C1059T C3037T C11518T C14408T C16391T C17326T A23403G G25563T AAAA29900-

EPI_ISL_471917
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/EXET-136D36/2020
 C241T C3037T C14408T A15990G A23403G C25350T

EPI_ISL_471921
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/EXET-136D72/2020
 C241T C3037T C4891T T12511C C14408T A23403G C25350T

EPI_ISL_471930
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/EXET-136EAC/2020
 C241T A2786G C3037T T3436C G11083T C14408T A23403G C26447T GGG28881AAC

EPI_ISL_471937
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/EXET-136F5E/2020
 C241T C3037T T3199C A12949G C14408T A23403G GGG28881AAC

EPI_ISL_471949
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/EXET-1370F0/2020
 C241T G2164A C3037T C14408T A23403G G26929T GGG28881AAC

EPI_ISL_471997
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F68C/2020
 C241T C3037T T3100G G10097A T12628C C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_472003
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F6E6/2020
 C241T C3037T G10097A A10616C C11109T C14408T A23403G C23731T G24386T G28580T GGG28881AAC

EPI_ISL_472004
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F6F5/2020
 C241T C3037T G10097A C14408T A23403G C23731T G24386T G27008T G27626A G28580T GGG28881AAC

EPI_ISL_472005
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F701/2020
 C241T C3037T C9180T G10097A C14408T A23403G C23731T G24386T G26558A G28580T GGG28881AAC

EPI_ISL_472008
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F73E/2020
 C241T C3037T G10097A C14408T A23403G C23731T G24386T G26558A G28580T GGG28881AAC

EPI_ISL_472012
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F77A/2020
 C241T C690T C3037T A3137G G10097A C14408T A23403G C23731T G24386T G27008T G28580T GGG28881AAC

EPI_ISL_472013
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F789/2020
 C241T C3037T G10097A C14408T A23403G C23731T G24386T G27008T G28580T GGG28881AAC

EPI_ISL_472459
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15C268/2020
 ATT1- C241T C3037T C14408T G21624T A23403G GGG28881AAC

EPI_ISL_472461
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15C286/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T T4330C T10129C G11801A C14408T T19839C A23403G T24063C G25552T GGG28881AAC

EPI_ISL_472489
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15C453/2020
 ATTAAAGG1- C241T C829T C1059T C3037T G3994A G11670R C14408T C20759Y A23403G G25563T G27289S G27415A G28371T

EPI_ISL_472618
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15CD94/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A23403G G23653T GGG28881AAC

EPI_ISL_473037
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160CBE/2020
 ATTA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_473570
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A G1583R C3037T C3411T C3885T C14408T C17104T A20268G A23403G G29734C GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_473575
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2399T C3037T A11430G C14408T G19117T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473580
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1980A C3037T T11581A C12025T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473582
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3689A T11660A C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473583
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T A2018G C3037T C14408T C16289T A23403G T25222C G25429T C26060T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473584
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8131T G11083T G12070T C14408T C16293T T17126C A20268G G22335T A23403G A27578T G29688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473585
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G11083T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473587
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1945C C3037T C14408T A23403G G25444T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473588
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7600T C10798A C13862T C14408T G20102T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473589
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473590
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C5184T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473592
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GAT27382CTC G28845T GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473593
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6258T C10798A C13862T C14408T C21304A A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473595
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A C3037T C3411T C3885T C14408T C17104T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473600
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9165T C10798A C12318T C13862T C14408T A23403G C25919T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473601
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189A C241T C3037T C14408T C22879A A23403G C27641T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473602
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C3411T C3885T A5353G C14408T C17104T A20268G A22623G A23403G C28253T G29227T G29734C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_473603
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2534A C3037T C14408T A23403G C25925T G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473608
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2867/2020
 C241T A2550G C3037T A3078G C4206T C14408T C19263T C20031A A23403G C27046T GGG28881AAC

EPI_ISL_473614
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2878/2020
 C241T C3037T C10798A C13862T C14408T C21304A A23403G C28836T

EPI_ISL_473615
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2879/2020
 C241T T694C C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_473616
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2884/2020
 C241T C3037T T6673C C10078T C14408T G15438T A20268G A23403G

EPI_ISL_473617
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2885/2020
 C241T C3037T G12070T C14408T T17126C G22335T A23403G C28836T G29688T

EPI_ISL_473618
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2886/2020
 C241T C3037T T3982C C14408T G22708T C22879A A23403G

EPI_ISL_473619
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2896/2020
 A1587G C6380A G11083T C11344T C13667T C14805T T17247C G26144T A29687G

EPI_ISL_473621
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2899/2020
 C241T C3037T C14408T C17249T G17278T A23403G G25429T

EPI_ISL_473784
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB2245/2020
 C241T C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_474991
 2020-04-21 2020-06-23
 Israel hCoV-19/Israel/CVL-n-10261/2020
 C241T C2416T C3037T C14408T A23403G G25563T T28208C G28703T A28768T

EPI_ISL_475016
 2020-04-21 2020-06-23
 Israel hCoV-19/Israel/CVL-n-10253/2020
 C241T C498T C3037T C14408T A22812G A23403G C26088T GGG28881AAC

EPI_ISL_475020
 2020-04-21 2020-06-23
 Israel hCoV-19/Israel/CVL-n-10262/2020
 C241T C1059T C3037T C6040T C11916T C14408T C18998T A23403G G25563T C27208T G29540A

EPI_ISL_475162
 2020-04-21 2020-06-23
 Sweden hCoV-19/Sweden/20-50935/2020
 C241T C3037T C14408T G16416T A23403G C26447T GGG28881AAC C28887T

EPI_ISL_475163
 2020-04-21 2020-06-23
 Sweden hCoV-19/Sweden/20-50936/2020
 C241T C3037T C14408T G16416T A23403G C26447T GGG28881AAC C28887T

EPI_ISL_475331
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D1130/2020
 C241T C3037T C11704T C14408T T19839C A23403G C26681T GGG28881AAC

EPI_ISL_475334
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D117C/2020
 C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC

EPI_ISL_475337
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D11A9/2020
 C241T C3037T C14408T G21724T A23403G C24096T GGG28881AAC

EPI_ISL_475339
 2020-04-21 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D1200/2020
 C241T C3037T C14408T C15324T A16169G A23403G C25433T C29546T

EPI_ISL_475835
 2020-04-21 2020-06-25
 Austria hCoV-19/Austria/CeMM0400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4107W C6145T G6446A C14408T A20268G A23403G G23477A C24378T C29304T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475842
 2020-04-21 2020-06-25
 Austria hCoV-19/Austria/CeMM0412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8655T T10033C C14408T G19429T A23403G GGG28881AAC G29540T C29679Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475852
 2020-04-21 2020-06-25
 Austria hCoV-19/Austria/CeMM0424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6145T C14408T A20268G A23403G G23477A C24378T C29304T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475861
 2020-04-21 2020-06-25
 Austria hCoV-19/Austria/CeMM0435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14691G C15324T C21017T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475862
 2020-04-21 2020-06-25
 Austria hCoV-19/Austria/CeMM0436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C24378T C29304T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475865
 2020-04-21 2020-06-25
 Austria hCoV-19/Austria/CeMM0448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T A10842C C14053T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475885
 2020-04-21 2020-06-25
 Austria hCoV-19/Austria/CeMM0483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6641K C10279Y C13667Y C14408T A20268G A23403G C24378T C29304T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475941
 2020-04-21 2020-06-25
 Singapore hCoV-19/Singapore/410/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_475944
 2020-04-21 2020-06-25
 Singapore hCoV-19/Singapore/413/2020
 A1103G C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_476126 LR824527 LR861097
 2020-04-21 2020-06-25
 Switzerland 140083
 C241T C3037T C4543Y C10893T C14408T C15081Y C15720Y G18697R T19341Y CA19547YR G19690T A20753G T21610W C21636Y T22516W A23403G C27920Y C29835Y

EPI_ISL_476706
 2020-04-21 2020-06-25
 United States hCoV-19/USA/MN-MDH-1121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C539T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_476991
 2020-04-21 2020-06-27
 Belgium hCoV-19/Belgium/rega-0421423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12008T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477008
 2020-04-21 2020-06-27
 Hungary hCoV-19/Hungary/UD-10168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5211T C14408T G16744A A20268G G21190A A23403G T26301G T28226C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478911
 2020-04-21 2020-06-30
 United Kingdom hCoV-19/England/OXON-B07FB/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T G10007T C14408T C16329T T16548C T18398C A23403G G24781T GGG28881AAC AAA29901-

EPI_ISL_478917
 2020-04-21 2020-06-30
 United Kingdom hCoV-19/England/OXON-B08DA/2020
 C241T C1441T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_478920
 2020-04-21 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0913/2020
 C241T C3037T C14408T T22921C A23403G GGG28881AAC C29545T G29736T AAAAAAAAAAAAA29891-

EPI_ISL_478922
 2020-04-21 2020-06-30
 United Kingdom hCoV-19/England/OXON-B095F/2020
 ATG1605- C2147T G9623T C9724T G11083T AAAAAAAAAAAAA29891-

EPI_ISL_478924
 2020-04-21 2020-06-30
 United Kingdom hCoV-19/England/OXON-B099B/2020
 C241T A1547G C3037T G11335T G12550A C14408T C16362T A23403G GGG28881AAC

EPI_ISL_479006
 2020-04-21 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1341/2020
 C241T C3037T G3259T C10450T C14408T A23403G GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_479010
 2020-04-21 2020-06-30
 United Kingdom hCoV-19/England/OXON-B13E7/2020
 C241T C3037T C14408T A23403G T25333C GGG28881AAC TACGATCGAGTGTACAGTGAACAATGC29748-

EPI_ISL_479012
 2020-04-21 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGT1- T137K T148K C241T C3037T G3259T C10450T C14408T A23403G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_479095
 2020-04-21 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1E22/2020
 A187G C241T C3037T C14408T A23403G AAAAAAAAA29895-

EPI_ISL_479114
 2020-04-21 2020-06-30
 United Kingdom hCoV-19/England/OXON-B20EF/2020
 C241T C3037T C14408T C19488T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_479126
 2020-04-21 2020-06-30
 United Kingdom hCoV-19/England/OXON-B21EC/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_479138
 2020-04-21 2020-06-30
 United Kingdom hCoV-19/England/OXON-B236E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C13119T C14408T A23403G A25891C GGG28881AAC AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_479144
 2020-04-21 2020-06-30
 United Kingdom hCoV-19/England/OXON-B242F/2020
 C241T C3037T G7798T C14408T A20268G A23403G C28854T

EPI_ISL_479439
 2020-04-21 2020-06-30
 United Kingdom hCoV-19/Wales/PHWC-16525D/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C313T C3037T C6629T C14408T G22627A G23311T A23403G G28628T GGG28881AAC

EPI_ISL_479496
 2020-04-21 2020-06-30
 India hCoV-19/India/NIV-12430/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C1912T A6081G C6312A G7675T C13730T C19185T C23929T C28311T A29089T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479497
 2020-04-21 2020-06-30
 India hCoV-19/India/NIV-12628/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T T3478C C5700A C14408T C23220T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480402 MT772569
 2020-04-21 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3096T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480866 MT704033
 2020-04-21 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0215/2020
 A1- T490A C3177T C8782T T18144C T18736C C21575T C24034T T26729C C27998T G28077C T28144C AG29700GA GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_480870 MT704037
 2020-04-21 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0219/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25471C G25563T G26065T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_480871 MT704038
 2020-04-21 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0220/2020
 A1- C241T C3037T C14408T A23403G A25505C GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_480872 MT704039
 2020-04-21 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0221/2020
 ATTA1- C241T G680A C2416T C3037T C11195T C14408T G15202T C22444T A23403G G25563T C26228T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_480873 MT704040
 2020-04-21 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0222/2020
 TTAAAGGTT2- T78G C241T C1059T C3037T C10188T C14408T C17745T A23403G T24982C G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480874 MT704041
 2020-04-21 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0223/2020
 C241T C3037T C8025T C14408T A20268G A23403G C26464T G29734C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_481605
 2020-04-21 2020-07-03
 Finland hCoV-19/Finland/21A12S11/2020
 C241T C1059T C3037T C14408T C21077T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481606
 2020-04-21 2020-07-03
 Finland hCoV-19/Finland/21A16S11/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C28453T C29555T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481607
 2020-04-21 2020-07-03
 Finland hCoV-19/Finland/21A19S11/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481608
 2020-04-21 2020-07-03
 Finland hCoV-19/Finland/21A20S7/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481609
 2020-04-21 2020-07-03
 Finland hCoV-19/Finland/21A27S7/2020
 C241T C1059T C2638T C3037T C14408T G19657A A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481610
 2020-04-21 2020-07-03
 Finland hCoV-19/Finland/21A39S11/2020
 C241T C3037T C6401T C14408T C16952T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481611
 2020-04-21 2020-07-03
 Finland hCoV-19/Finland/21A41S7/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481612
 2020-04-21 2020-07-03
 Finland hCoV-19/Finland/21A4S11/2020
 C241T C1059T C3037T C13424A C14408T A23403G G24368T G25563T C28453T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481613
 2020-04-21 2020-07-03
 Finland hCoV-19/Finland/21A50S11/2020
 C241T C1059T C3037T C14408T T15198C C18322T C19983T C21575T A23403G G24368T G25563T C28453T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481971
 2020-04-21 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12E311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G10096A C14408T A23403G G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481973
 2020-04-21 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12E144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C26681T GGG28881AAC G29414T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481974
 2020-04-21 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12E33F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C678T C3037T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482004
 2020-04-21 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12E126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C3037T C14408T T19839C A23403G C26681T GGG28881AAC G29414T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482017
 2020-04-21 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12E0CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C6636Y A6944G C13987T C16949Y C17172Y T20277C G28242K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482366
 2020-04-21 2020-07-03
 United States hCoV-19/USA/OR-PROV-095/2020
 G208T C241T C1059T C3037T T3312C A10323G C14408T C22949T A23403G G25563T

EPI_ISL_482367
 2020-04-21 2020-07-03
 United States hCoV-19/USA/OR-PROV-096/2020
 C241T C1059T C3037T T3312C T8041C C14408T C19274A A23403G G25563T G29474T

EPI_ISL_482369
 2020-04-21 2020-07-03
 United States hCoV-19/USA/OR-PROV-098/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T G28027T G29742T

EPI_ISL_482968
 2020-04-21 2020-07-06
 United States hCoV-19/USA/MN-MDH-1247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C12008T G13571T C14408T A23403G G25563T C26625T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_483263
 2020-04-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0623-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T

EPI_ISL_483264
 2020-04-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0624-IPL/2020
 ATTAAAG1- C241T C3037T G4510T C4582T C11102T C14408T A20268G A23403G

EPI_ISL_483265
 2020-04-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0626-IPL/2020
 ATTA1- C241T C3037T C14408T A20268G A23403G A23414G T24076C C28854T G29759T

EPI_ISL_483266
 2020-04-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0627-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T G4657A C4965T C14408T G21578T A23403G G25563T

EPI_ISL_483267
 2020-04-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0628-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C379A C1059T C3037T G4657A C14408T A19941G G21578T A23403G G25563T

EPI_ISL_483393
 2020-04-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0839-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C379A C1059T C3037T G4657A C14408T A19941G G21578T A23403G G25563T

EPI_ISL_483466
 2020-04-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1019-IPL/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A20268G A23403G A23414G T24076C C28854T G29759T

EPI_ISL_483470
 2020-04-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1025-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C379A C1059T C3037T G4657A G8371T C14408T G21578T A23403G G25563T

EPI_ISL_483475
 2020-04-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1035-IPL/2020
 ATTAAAGGTTTATACC1- C241T C3037T G4510T C4582T C11102T C14408T A20268G A23403G

EPI_ISL_483601
 2020-04-21 2020-07-08
 Singapore hCoV-19/Singapore/578/2020
 ATTAA1- C6310A C6312A A8509G G11083T C13730T C19524T G22201T C23929T C26882T C28311T AAAAAAAAAAAA29892-

EPI_ISL_484394
 2020-04-21 2020-07-08
 United Kingdom hCoV-19/England/NOTT-112565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5575T C14408T T19584C G22992A A23403G C23430T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485083
 2020-04-21 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26513035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C14408T C15763T C18568T A23403G G25563T C27964T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485089
 2020-04-21 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26513049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T G28899A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485095
 2020-04-21 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26513062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C629T C1059T C3037T A8893T C9474T C14408T G16365T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485233
 2020-04-21 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26629240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C14408T C15763T C18568T A23403G G25563T C27964T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485237
 2020-04-21 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26629254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T G28899A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485243
 2020-04-21 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26629267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C629T C1059T C3037T A8893T C9474T C14408T G16365T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485881
 2020-04-21 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26513051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T G17193T A23403G G25563T C27964T G29402T CGATCGAGTG29750-

EPI_ISL_486193
 2020-04-21 2020-07-10
 United States hCoV-19/USA/CA-CZB-1894/2020
 ATTA1- C241T C823T C1457T C3037T G3304T C14408T G18898T G18907T C22208T A22904M A23122R A23403G T25902W T25908W G25913S GGG28881AAC

EPI_ISL_486195 MT750395
 2020-04-21 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1896/2020
 ATTAA1- C241T C379A C1059T C3037T A8679W C14408T C22224T A22904H A23122R A23403G C24333T G25563T T25902W T25908W G25913S T27318A G28703T

EPI_ISL_486196 MT750396
 2020-04-21 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1897/2020
 AT1- C241T C379A C1059T C1170T C3037T C14408T C22224T A23403G G25563T T27318A G28703T

EPI_ISL_486293 MT750462
 2020-04-21 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2049/2020
 ATTA1- C241T C3037T C8389T C12415T C14408T A23122R A23403G G25563T A29865R T29867Y

EPI_ISL_486294 MT750463
 2020-04-21 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2050/2020
 ATTA1- A30R C241T C3037T C5784Y C8389T C14408T A23403G G25563T A25590W

EPI_ISL_486871
 2020-04-21 2020-07-12
 Senegal hCoV-19/Senegal/6481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_487627
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/LOND-D658C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C14408T C16178T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_487677
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487723
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C7279T A9744G G11083T C14805T C21638T G26144T C27208T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487779
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487797
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487878
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487879
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T A13308G C14805T C25513T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487938
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8254R T13717A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487954
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487984
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1234C C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488001
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C7279T A9744G C11001T G11083T C11565Y C14805T C21638T G26144T C27208T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488022
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/NORT-29789B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4276T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488222
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E5B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A310M C1059T C1968T C3037T C14408T A23403G G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488225
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E78E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C18486T G29032A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488227
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E7BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488249
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EE10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174T C853T C1471Y A2480G C2558T C2706T A7025G C7390T C9724T G11083T C14293Y C14805T G26144T C28399T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488255
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E6CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T G22203T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488256
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1812Y C3037T C6573T C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488275
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E77F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C18486T G29032A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488276
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5437T C7083T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488284
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EC70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C3487T C5806T C8841T C11195T C14408T C18131T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488302
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E50C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T T27919C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488307
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T C22295Y G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488314
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EE3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488323
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12ED9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9962T C14408T C19170T G19509A C22536T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488339
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EA67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C29353T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488352
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12ECDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488354
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5629A C14408T T19839C A23403G G25552T C25714T GGG28881AAC C29061T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488377
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2395T G2448A C3037T C6573T C8481A C14408T G18972T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488395
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E79D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1670T C3037T C14408T A23403G A26162G T28046C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488401
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E5FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4189T G7038A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488407
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E7AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1670T C3037T G7743T C14408T C17676T A23403G A26162G T28046C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488436
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4456T T7792C C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488448
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1670T C3037T G7743T C14408T A23403G A26162G T28046C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488449
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1670T C3037T C8290Y C14408T A23403G A26162G T28046C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489311
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-10329D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4475T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489362
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-1032BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G C24146T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489365
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-1031AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C13551T C14408T A23403G A23442G C25904T C28708T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489475
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/CAMB-1ACC2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9438T G10262A C14408T T19839C C22995T A23403G C26131T A27669G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489506
 2020-04-21 2020-07-14
 United Kingdom hCoV-19/England/CAMB-1AC6F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1014M C2937Y C3037T C4345Y C4683Y C6558Y G9130K C13730Y C14408T A20268R A23403G G25429K G26529K C28054Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489745 MT757056
 2020-04-21 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0336/2020
 AT1- C241T C1059T G2293T C3037T C14408T A19005G A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_489747 MT757058
 2020-04-21 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0338/2020
 AT1- C241T C1059T C3037T C14408T A19005G A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_489874 EPI_ISL_491070
 2020-04-21 2020-07-14
 Romania hCoV-19/Romania/ROSV_3561/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2140G C3037T T9697C C11866T C14408T A20268G A23403G T29726- AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_490206
 2020-04-21 2020-07-15
 Germany hCoV-19/Germany/MGZ-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9699C C14408T C21711T A23403G G23420A C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491130
 2020-04-21 2020-07-16
 Oman hCoV-19/Oman/B-2110/2020
 ATTAAAGGT1- C241T C3037T G10265A C14408T C16293T G17302T A23403G GGG28881AAC AATGACAAAAAA29865- AA29880GG AAA29884GTG AA29889GG AAA29892CTC A29896G AAA29900TTG

EPI_ISL_491168
 2020-04-21 2020-07-16
 Oman hCoV-19/Oman/C-1186/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C13694T C14408T A23403G GGG28881AAC A29850T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_491498
 2020-04-21 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2215G C3037T A10874G C12823T C14408T A23403G C24381Y G25429T G25440A C25916T T26677C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491507
 2020-04-21 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A23403G A24862G T26715K G26720R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491511
 2020-04-21 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T26715K G26720R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491513
 2020-04-21 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491520
 2020-04-21 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9802R C10507Y C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491521
 2020-04-21 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C25002T T26715K G26720R C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491531
 2020-04-21 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A23403G A24862G G26428T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491532
 2020-04-21 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2987C C3037T A3215G C6990Y C14408T G15438T A20268G A23403G T26715K G26720R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491535
 2020-04-21 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C7423T C7869T A15018G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491542
 2020-04-21 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T C9598T C10582T C14408T G22309A A23403G G25563T C26461T T26715K G26720R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491583
 2020-04-21 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A642G G2883A C3037T C3619T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491660
 2020-04-21 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096Y C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491677
 2020-04-21 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C25002T T26715K G26720R C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491682
 2020-04-21 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C8917T C14408T C16289T A23403G G25429T C27294T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491695
 2020-04-21 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C26124T T26715K G26720R C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493420
 2020-04-21 2020-07-21
 Singapore hCoV-19/Singapore/660/2020
 ATTAAAGGTT1- G2035T C6310A C6312A G11083T C13730T C19524T C23929T G27798T C28311T C28758T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_493476
 2020-04-21 2020-07-21
 United Kingdom hCoV-19/England/NORT-298DAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3259T C4002T G10097A C13536T C14408T A23403G C23731T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493477
 2020-04-21 2020-07-21
 United Kingdom hCoV-19/England/NORT-298E01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G2528A G11083T C14805T C17410T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493568
 2020-04-21 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C2623T G3582A A20055G C20270T G22661T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494445
 2020-04-21 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_494568
 2020-04-21 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C13011T C14408T G17014T A23403G G25217A G25563T G27621T

EPI_ISL_494569
 2020-04-21 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C14818T C16762T C18264T A23403G G25563T

EPI_ISL_494589
 2020-04-21 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1415/2020
 ATTA1- C241T C3037T C9430T C14408T G19656T G19969A A20268G A23403G C28854T

EPI_ISL_494590
 2020-04-21 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1416/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494593
 2020-04-21 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28531T C28854T

EPI_ISL_494595
 2020-04-21 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1426/2020
 ATTAAAGGTTTATACC1- C241T C3037T G12718A C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494620
 2020-04-21 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T C16193T A23403G C25499T G25563T

EPI_ISL_494634
 2020-04-21 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1512/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_495095
 2020-04-21 2020-07-22
 United Kingdom hCoV-19/England/WSFT-25C1659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10712T C14408T G18028T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495109
 2020-04-21 2020-07-22
 United Kingdom hCoV-19/England/BRIS-13320D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_496368
 2020-04-21 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C27494T

EPI_ISL_496534
 2020-04-21 2020-07-24
 India hCoV-19/India/BJMC_2035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C313T C3037T C5700A C14408T A23403G G26951T GGG28881AAC A29731G

EPI_ISL_496549
 2020-04-21 2020-07-24
 India hCoV-19/India/BJMC_2030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C5700A C14408T G15906T A23403G GGG28881AAC A29903-

EPI_ISL_498229
 2020-04-21 2020-07-27
 Senegal hCoV-19/Senegal/6626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1190T C3037T G11083T C14408T C15324T G15517A A23403G C25466T AGTGTAC29756- TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_498230
 2020-04-21 2020-07-27
 Senegal hCoV-19/Senegal/6619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4255A C14408T C15324T C18652T A23403G T28208C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_498659 MT873923
 2020-04-21 2020-07-27
 United States SARS-CoV-2/human/USA/UT-03429/2020
 ATTAA1- C241T T833C C1059T C3037T C6541T C14408T A22320G A23403G G25563T C27964T

EPI_ISL_499315
 2020-04-21 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D3C2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G A3003T C3037T C5730T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499316
 2020-04-21 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D3C3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1333A C3037T C6968T T7435C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499318
 2020-04-21 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D3C79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6968T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499322
 2020-04-21 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D3CF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6916C C14408T C17410T C18788T T19839C G21830C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499323
 2020-04-21 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D3D1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1155A C3037T C14408T G20068A A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499324
 2020-04-21 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D3D2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C26681T T28618C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499325
 2020-04-21 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D3D3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7745A C14408T C18788T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501153
 2020-04-21 2020-07-30
 United States hCoV-19/USA/WA-UW-7882/2020
 ATTAAAGGTTTATA1- TCCC18GGGA C241T C1059T C1437T C3037T C6040T T8883C TT8885AA C11036T C12114T AGG13512TTA TA14222GC C14408T T21146A G21151T A23403G G25563T C27945T

EPI_ISL_507293
 2020-04-21 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII8317V/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C9700T C14408T T21363C A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507294
 2020-04-21 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII8319V/2020
 A1- C241T C3037T C14408T G18340A C18484A A20268G A23403G T29148C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507942
 2020-04-21 2020-08-03
 United States hCoV-19/USA/MN-MDH-1353/2020
 ATTA1- G5017T C8782T G14350T A17858G C18060T A24694T T28144C C28310A G28812T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_507943
 2020-04-21 2020-08-03
 United States hCoV-19/USA/MN-MDH-1354/2020
 ATTA1- G5017T C8782T G14350T C17747T A17858G C18060T A24694T T28144C C28310A G28812T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_507944
 2020-04-21 2020-08-03
 United States hCoV-19/USA/MN-MDH-1355/2020
 ATTA1- T10G G5017T C8782T G14350T C17747T A17858G C18060T A24694T T28144C C28310A G28812T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_507945
 2020-04-21 2020-08-03
 United States hCoV-19/USA/MN-MDH-1356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G5017T C8782T G14350T C17747T A17858G C18060T A24694T G27762T T28144C C28310A G28812T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_508343
 2020-04-21 2020-08-04
 India hCoV-19/India/IK14/2020
 A4T C241T C3037T C8860T C14408T A23403G G28221T G29868A

EPI_ISL_508344
 2020-04-21 2020-08-04
 India hCoV-19/India/IK15/2020
 C5031T G5903T C7945T C8782T G22468T T28144C G28878A G29742A G29868A

EPI_ISL_509065
 2020-04-21 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20980A TGG21294AAA A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509453 MT827215
 2020-04-21 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0049/2020
 ATTAAAGGTTTATACCT1- C241T C1059T T2158C C3037T C4780A C14408T C14980T A23403G G25563T A29900G A29903-

EPI_ISL_509705 MT844042
 2020-04-21 2020-08-05
 United States SARS-CoV-2/human/USA/WI-CDC-0946/2020
 AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509708 MT844028
 2020-04-21 2020-08-05
 United States SARS-CoV-2/human/USA/UT-CDC-9774/2020
 C241T C3037T C14408T C21575Y A23403G C25672Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_510357
 2020-04-21 2020-08-06
 Spain hCoV-19/Spain/COV005067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A861T C3037T C11752A C14408T T17139C A23403G GGG28881AAC G29100T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_510819
 2020-04-21 2020-08-07
 Sweden hCoV-19/Sweden/20-50934/2020
 C241T C3037T C14408T G16416T A23403G C26447T GGG28881AAC C28887T

EPI_ISL_512231
 2020-04-21 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_512956
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH546/2020
 C241T C3037T C14408T C18877T A23403G G25563T GGG28881AAC

EPI_ISL_512957
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH547/2020
 C241T C3037T C8782T C14408T C18877T A23403G G25563T C26735T TTA27698- -29867GGCAGATGCTGTCGTGTTG

EPI_ISL_512959
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH558/2020
 C241T C3037T C8782T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512977
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH587/2020
 C241T C3037T C14408T GGG28881AAC

EPI_ISL_512979
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH589/2020
 C64T C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_512980
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH590/2020
 C64T C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_512981
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH591/2020
 C241T C3037T C14408T C16915T A23403G T24202C G25563T C26735T

EPI_ISL_512982
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH592/2020
 C241T C3037T C14408T A23403G G25563T C26735T

EPI_ISL_513161
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH452/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T T27320C

EPI_ISL_513173
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH644/2020
 C241T C8782T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513214
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH290/2020
 C241T C3037T C9924T C10582T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513215
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH291/2020
 C241T C3037T C9924T C10582T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513216
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH293/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513219
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH297/2020
 C241T C3037T T8497C C10582T C14408T T15009C C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513221
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH300/2020
 C241T G1186A T2092C C3037T C7989T C14408T C17410T C18877T A23403G G25563T C26735T

EPI_ISL_513222
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH301/2020
 C241T C3037T C9924T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513226
 2020-04-21 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH309/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_514070
 2020-04-21 2020-08-14
 United States hCoV-19/USA/UN-CDC-7441/2020
 C241T T809C C3037T A7929G C14408T C23297T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514071
 2020-04-21 2020-08-14
 United States hCoV-19/USA/UN-CDC-7462/2020
 C241T C3037T C8664Y C8964Y G10610K C14408T C14708Y A18328W G18505R C20283Y A23403G C23595Y C24299Y C24444Y T24656W G28079K C28448Y GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514072
 2020-04-21 2020-08-14
 United States hCoV-19/USA/UN-CDC-7467/2020
 C241T C3037T T9757C C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514073
 2020-04-21 2020-08-14
 United States hCoV-19/USA/UN-CDC-7470/2020
 C241T C3037T A7929G C14408T A23403G G24872K GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514431 MT883499
 2020-04-21 2020-08-14
 Serbia SARS-CoV-2/human/SRB/UE16-22-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G24776C G26529T C28057T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515391
 2020-04-21 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0120/2020
 ATT1- C241T C379A C1059T C3037T T4579A C14408T C18377T C20740A A22374G A23403G G25563T T28187C

EPI_ISL_520666
 2020-04-21 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L121759318/2020
 C241T C539T C3037T C14408T A23403G G26690T GGG28881AAC

EPI_ISL_520667
 2020-04-21 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L123065607/2020
 C683T C7735T C8782T G11230T T28144C G28878A G29742A

EPI_ISL_520744
 2020-04-21 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L9986375/2020
 C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_522675 MT973317
 2020-04-21 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C706Y C4540T A4624G C8782T T9477A C14805T T22362Y G25979T G26062T T28144C C28311T C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_523205
 2020-04-21 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T G18583A A23403G G25563T G25691T C28887T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523425
 2020-04-21 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C900T C1594T C3037T C9438T C10969T C11109T A11728G C14408T C16293T G17019T A23403G G25563T C29642T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523987
 2020-04-21 2020-08-27
 Brazil hCoV-19/Brazil/SP-204/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12053T C14408T G16236A A23403G T23952G G25088T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_523988
 2020-04-21 2020-08-27
 Brazil hCoV-19/Brazil/SP-205/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C110T C241T C3037T C8389T C12053T C14408T T15102G A23403G G25088T GGG28881AAC G29864C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_525424
 2020-04-21 2020-08-29
 Oman hCoV-19/Oman/B-2106/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_526235
 2020-04-21 2020-09-01
 Hungary hCoV-19/Hungary/MH-1101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3426T C3686T T10567C C14408T A23403G G25074T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526479
 2020-04-21 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB4247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T G17488A A23403G G24821T G28460T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526755
 2020-04-21 2020-09-02
 United Kingdom hCoV-19/England/201720576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C25635T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_526756
 2020-04-21 2020-09-02
 United Kingdom hCoV-19/England/201720577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C4893T C14408T C21597Y A23403G C25635T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527060
 2020-04-21 2020-09-03
 Australia hCoV-19/Australia/NSW2574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14724T C14805T A16162G G16537A C16655T C19813T G26144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527667
 2020-04-21 2020-09-04
 United States hCoV-19/USA/MN-CDC-6186/2020
 C241T C3037T C14408T C16830T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527668
 2020-04-21 2020-09-04
 United States hCoV-19/USA/MN-CDC-6189/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527669
 2020-04-21 2020-09-04
 United States hCoV-19/USA/MN-CDC-6192/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527859
 2020-04-21 2020-09-05
 Brazil hCoV-19/Brazil/SP-282/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C8334T A13395G C14408T A23403G G25088T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861A

EPI_ISL_527866
 2020-04-21 2020-09-05
 Brazil hCoV-19/Brazil/SP-221/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T T4402C T8729C C12053T G14028T C14408T T14501C A23403G G25088T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_530073
 2020-04-21 2020-09-10
 Spain hCoV-19/Spain/MD-LP74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530214 MT997736
 2020-04-21 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T AAGTCAGAGGACGCGCAGGGAATGGATAATCTTGCCTGCGAAGATCTA6350- C14408T C16830T A23403G G28812T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_534333
 2020-04-21 2020-09-13
 Spain hCoV-19/Spain/MD-HLP-105-4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3045T C14408T C15141T C20259T A20268G A23403G T27205- C29686T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534825
 2020-04-21 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2F00/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_534909
 2020-04-21 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3CAE/2020
 C241T C3037T C3373A C3923A C11195T C14408T C18252T G19455T A23403G GGG28881AAC

EPI_ISL_534912
 2020-04-21 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3D8D/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_534927
 2020-04-21 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4083/2020
 C241T C2370T C3037T C14408T T19839C A23403G G25906T C26681T GGG28881AAC T29417C

EPI_ISL_534942
 2020-04-21 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4250/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_535019
 2020-04-21 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4E2F/2020
 C241T C3037T C14408T T19839C A23403G G25906T C26681T GGG28881AAC T29417C AAAAAAAAAAAAA29891-

EPI_ISL_537484
 2020-04-21 2020-09-16
 United States hCoV-19/USA/CA-UCLA-14/2020
 A1- C241T A1652G C3037T T6340A C14408T C18877T A23403G G25563T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_538868
 2020-04-21 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A98F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6031T C14408T G18859T G21624T A23403G G24040K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539321
 2020-04-21 2020-09-17
 Netherlands hCoV-19/env/Netherlands/NB-94339-I/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTG1- C241T G1338T G2527T C3037T A23403G T23877G C24082A GGG28881AAC GCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29773-

EPI_ISL_539780
 2020-04-21 2020-09-19
 Czech Republic hCoV-19/Czech Republic/NRL-6047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8016T C14408T A23403G G26143A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541155
 2020-04-21 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1249/2020
 A1- C241T C1059T C3037T C3177T A4386G T6685C C10319T C14408T A23403G G25563T ATT27759- C27964T G28763A C29250T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_541393
 2020-04-21 2020-09-22
 Brazil hCoV-19/Brazil/SE-6603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C14408T C18570T C23220T A23403G GGG28881AAC GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_542588
 2020-04-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-1218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T C6310T C10188T C14408T G18720A C19264T A23403G T24982C A25315G C25413T G26122A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542592
 2020-04-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-1225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542597
 2020-04-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-1232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542646
 2020-04-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-1313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C7124T C8109T C8782T C9561T T18736C C24034T C25433T T26729C C26895T G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542687
 2020-04-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-1384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542689
 2020-04-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-1386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C7124T C8782T C9180T C9561T T13279C T18736C C24034T C25433T C25613T T26099G T26729C C26895T G28077C T28144C A29700G G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542694
 2020-04-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-1396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1457T C3037T C10030T C14408T C22264T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542695
 2020-04-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-1397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T2158C C3037T T6143C C14408T C16260T T17781C A23403G G25563T G27948T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542711
 2020-04-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-1418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542714
 2020-04-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-1422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C244T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542721
 2020-04-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-1433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T2803A C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542744
 2020-04-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-1482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542791
 2020-04-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-1722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13399C C14408T A23403G C25587T G28827C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545239
 2020-04-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-2310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13863G C14408T A23403G C27679T GGG28881AAC GG29234TT G29383T G29553A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547496
 2020-04-21 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C3330T C6633T C9163T G10793A C11109T C14408T A23403G G25563T G27390T G28845T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560580
 2020-04-21 2020-09-29
 France hCoV-19/France/CVL8297/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C36T C66T C241T C3037T C14408T C15324T C20762T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_568948
 2020-04-21 2020-10-02
 France hCoV-19/France/IHU-0728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1288T C2189T C3037T C14408T C15324T G19086T A23403G G28916T C29754T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568949
 2020-04-21 2020-10-02
 France hCoV-19/France/IHU-0729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T C3037T C14408T G19518T A23403G C24642T G28845T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568950
 2020-04-21 2020-10-02
 France hCoV-19/France/IHU-0730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C8892T C14408T C16887T A23403G C27046T T28360C GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568951
 2020-04-21 2020-10-02
 France hCoV-19/France/IHU-0731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C8892T C14408T C16887T A23403G G23608T C27046T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569248 LR794406
 2020-04-21 2020-04-21
 France IHUCOVID-0019
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569249 LR794401
 2020-04-21 2020-04-21
 France IHUCOVID-0020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T A11117G C14408T T15021C C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569252 LR794399
 2020-04-21 2020-04-21
 France IHUCOVID-0024
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T A11117G C14408T T15021C C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569253 LR794405
 2020-04-21 2020-04-21
 France IHUCOVID-0026
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T C19602T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569254 LR794400
 2020-04-21 2020-04-21
 France IHUCOVID-0028
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2189T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569255 LR794409
 2020-04-21 2020-04-21
 France IHUCOVID-0029
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C5806T C12528T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569257 LR794408
 2020-04-21 2020-04-21
 France IHUCOVID-0031
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C2676T C8782T C15368T A22606T T28144C C28312T G28878A GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_569258 LR794414
 2020-04-21 2020-04-21
 France IHUCOVID-0032
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C12789T C14408T G21225T A23403G G25563T GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_569259 LR794417
 2020-04-21 2020-04-21
 France IHUCOVID-0033
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T G16089A A23403G G24794T G28202A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569261 LR794412
 2020-04-21 2020-04-21
 France IHUCOVID-0037
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569262 LR794410
 2020-04-21 2020-04-21
 France IHUCOVID-0038
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569264 LR794407
 2020-04-21 2020-04-21
 France IHUCOVID-0040
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569265 LR794411
 2020-04-21 2020-04-21
 France IHUCOVID-0044
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569266 LR794421
 2020-04-21 2020-04-21
 France IHUCOVID-0045
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569267 LR794418
 2020-04-21 2020-04-21
 France IHUCOVID-0046
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569269 LR794420
 2020-04-21 2020-04-21
 France IHUCOVID-0049
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C541T C1059T C3037T G11083T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569270 LR794425
 2020-04-21 2020-04-21
 France IHUCOVID-0050
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T C16386T G19900A A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569271 LR794422
 2020-04-21 2020-04-21
 France IHUCOVID-0051
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C9246T G11083T C12663T C14408T A23403G GGG28881AAC AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_569272 LR794423
 2020-04-21 2020-04-21
 France IHUCOVID-0053
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569273 LR794424
 2020-04-21 2020-04-21
 France IHUCOVID-0054
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C16394T A23403G G25776T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569274 LR794389
 2020-04-21 2020-04-21
 France IHUCOVID-0055
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C3902T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569275 LR794380
 2020-04-21 2020-04-21
 France IHUCOVID-0056
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T G11083T C14408T A23403G G25563T C28311T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569276 LR794387
 2020-04-21 2020-04-21
 France IHUCOVID-0057
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569277 LR794386
 2020-04-21 2020-04-21
 France IHUCOVID-0058
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C11152T C14408T A23403G G25563T G27996T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569279 LR794391
 2020-04-21 2020-04-21
 France IHUCOVID-0060
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T CCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29802-

EPI_ISL_569280 LR794388
 2020-04-21 2020-04-21
 France IHUCOVID-0061
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T C15120T A23403G G25563T C28519T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569285 LR794381
 2020-04-21 2020-04-21
 France IHUCOVID-0066
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T G17964A A23403G C23575T G24095T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569288 LR794383
 2020-04-21 2020-04-21
 France IHUCOVID-0071
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G3328T C14408T A23403G G25563T G28326T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569290 LR794385
 2020-04-21 2020-04-21
 France IHUCOVID-0073
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G G28690T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569291 LR794390
 2020-04-21 2020-04-21
 France IHUCOVID-0074
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569292 LR794384
 2020-04-21 2020-04-21
 France IHUCOVID-0075
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T AAGTCATTT686- C1059T C3037T C14408T G16377T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569293 LR794382
 2020-04-21 2020-04-21
 France IHUCOVID-0076
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T C19488T A23403G G25563T G27996T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569294 LR794427
 2020-04-21 2020-04-21
 France IHUCOVID-0078
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_569295 LR794431
 2020-04-21 2020-04-21
 France IHUCOVID-0079
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T A1198G C2416T C3037T C6401T C13458T C14408T C20946T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569296 LR794426
 2020-04-21 2020-04-21
 France IHUCOVID-0080
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G G25699T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569297 LR794437
 2020-04-21 2020-04-21
 France IHUCOVID-0081
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATA1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569302 LR794430
 2020-04-21 2020-04-21
 France IHUCOVID-0087
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T T7424G C10252T C14408T G20125C A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569303 LR794432
 2020-04-21 2020-04-21
 France IHUCOVID-0092
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T T21369C A23403G G24193A G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569304 LR794433
 2020-04-21 2020-04-21
 France IHUCOVID-0093
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T C19602T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569305 LR794434
 2020-04-21 2020-04-21
 France IHUCOVID-0094
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14391T C14408T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569307 LR794443
 2020-04-21 2020-04-21
 France IHUCOVID-0097
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- G204T C241T C1059T C3037T G8676T C14408T A19167G A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569308 LR794442
 2020-04-21 2020-04-21
 France IHUCOVID-0099
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACT1- C241T C2416T C3037T G8371T C14408T A23403G G25563T C25667T G26718T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569312 LR794440
 2020-04-21 2020-04-21
 France IHUCOVID-0107
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T TACATG21765- A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569313 LR794441
 2020-04-21 2020-04-21
 France IHUCOVID-0108
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569314 LR794448
 2020-04-21 2020-04-21
 France IHUCOVID-0109
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C958T C2416T C3037T G8371T C14408T C16289T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569315 LR794449
 2020-04-21 2020-04-21
 France IHUCOVID-0115
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T A4800G C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569318 LR794446
 2020-04-21 2020-04-21
 France IHUCOVID-0118
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- A1515G C9223T G11083T G12565T C14805T T17247C G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569324 LR794458
 2020-04-21 2020-04-21
 France IHUCOVID-0128
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T G18412T A23403G GGG28881AAC AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_569325 LR794461
 2020-04-21 2020-04-21
 France IHUCOVID-0129
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G3338T C14408T G15438T C21597T C22550T A23403G G25563T C25731T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569327 LR794464
 2020-04-21 2020-04-21
 France IHUCOVID-0131
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569328 LR794460
 2020-04-21 2020-04-21
 France IHUCOVID-0132
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C18175T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569329 LR794459
 2020-04-21 2020-04-21
 France IHUCOVID-0133
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C8394T C14408T C15277T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569331 LR794462
 2020-04-21 2020-04-21
 France IHUCOVID-0136
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569332 LR794465
 2020-04-21 2020-04-21
 France IHUCOVID-0139
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569333 LR794466
 2020-04-21 2020-04-21
 France IHUCOVID-0141
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T ATG1605- C3037T C7162T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569339 LR794467
 2020-04-21 2020-04-21
 France IHUCOVID-0153
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C10369T C14408T C20199T A23403G G25563T G26314T C27494T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569342 LR794470
 2020-04-21 2020-04-21
 France IHUCOVID-0160
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C683T C2416T T2602G C3037T G8371T G11083T C14408T C19160T A23403G G25563T G28027T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569343 LR794473
 2020-04-21 2020-04-21
 France IHUCOVID-0162
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C683T C2416T T2602G C3037T G8371T G11083T C14408T C19160T A23403G G25563T G28027T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569344 LR794469
 2020-04-21 2020-04-21
 France IHUCOVID-0167
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T C19602T A23403G G25720T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569345 LR794479
 2020-04-21 2020-04-21
 France IHUCOVID-0168
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569346 LR794482
 2020-04-21 2020-04-21
 France IHUCOVID-0170
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T C3037T C14408T A23403G G24998T GGG28881AAC C29167T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569347 LR794480
 2020-04-21 2020-04-21
 France IHUCOVID-0171
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2189T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569348 LR794478
 2020-04-21 2020-04-21
 France IHUCOVID-0172
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T T3049C G8371T G11083T C14408T G17808T C19160T A23403G G25563T G27261T G28027T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569350 LR794483
 2020-04-21 2020-04-21
 France IHUCOVID-0177
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T C3037T C14408T C23248T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569351 LR794481
 2020-04-21 2020-04-21
 France IHUCOVID-0178
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C14408T T20310C A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569352 LR794490
 2020-04-21 2020-04-21
 France IHUCOVID-0179
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T G11858A C14408T A23403G G25563T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_569353 LR794487
 2020-04-21 2020-04-21
 France IHUCOVID-0180
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T A1198G C2416T C3037T C6401T C13458T C14408T C20946T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569354 LR794493
 2020-04-21 2020-04-21
 France IHUCOVID-0186
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569356 LR794496
 2020-04-21 2020-04-21
 France IHUCOVID-0188
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T C3037T C14408T G19518T A23403G G28845T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569357 LR794492
 2020-04-21 2020-04-21
 France IHUCOVID-0189
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C9886T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569358 LR794494
 2020-04-21 2020-04-21
 France IHUCOVID-0190
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C19884T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569359 LR794488
 2020-04-21 2020-04-21
 France IHUCOVID-0191
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T A12334T C14408T C15810T C22480T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569360 LR794491
 2020-04-21 2020-04-21
 France IHUCOVID-0193
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T G27996T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569361 LR794495
 2020-04-21 2020-04-21
 France IHUCOVID-0194
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T C3037T C14408T A23403G GGG28881AAC G29527T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569362 LR794485
 2020-04-21 2020-04-21
 France IHUCOVID-0195
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C18175T A20268G A23403G G29745T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569363 LR794486
 2020-04-21 2020-04-21
 France IHUCOVID-0196
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C3619T G8371T C14408T A20294G A23403G G25563T G29779C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569365 LR794498
 2020-04-21 2020-04-21
 France IHUCOVID-0198
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T C3037T C14408T C23248T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569366 LR794500
 2020-04-21 2020-04-21
 France IHUCOVID-0199
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C10582T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569368 LR794501
 2020-04-21 2020-04-21
 France IHUCOVID-0201
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569369 LR794504
 2020-04-21 2020-04-21
 France IHUCOVID-0203
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C4551T T5338C C14408T T18351C C21364T A23403G G25563T G28851A C29171T AGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29797-

EPI_ISL_569370 LR794502
 2020-04-21 2020-04-21
 France IHUCOVID-0204
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569371 LR794503
 2020-04-21 2020-04-21
 France IHUCOVID-0205
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T T2537C C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569372 LR794517
 2020-04-21 2020-04-21
 France IHUCOVID-0206
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569373 LR794505
 2020-04-21 2020-04-21
 France IHUCOVID-0208
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C10802T C14408T C23191T A23403G G24050C G25563T CTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29788-

EPI_ISL_569374 LR794506
 2020-04-21 2020-04-21
 France IHUCOVID-0209
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T A3094G G8371T C14408T A23403G G25563T C26907A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569375 LR794511
 2020-04-21 2020-04-21
 France IHUCOVID-0210
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569377 LR794509
 2020-04-21 2020-04-21
 France IHUCOVID-0212
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569378 LR794514
 2020-04-21 2020-04-21
 France IHUCOVID-0213
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T C19602T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569379 LR794507
 2020-04-21 2020-04-21
 France IHUCOVID-0214
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C4320T G8371T C12439T C14408T A23403G G25563T C26907A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569380 LR794510
 2020-04-21 2020-04-21
 France IHUCOVID-0215
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C10228T C14408T A15779G A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569381 LR794516
 2020-04-21 2020-04-21
 France IHUCOVID-0216
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T AAGTCATTT686- C1059T C3037T C4886T C14408T A23403G G25563T G29179T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569382 LR794513
 2020-04-21 2020-04-21
 France IHUCOVID-0217
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G6032A G11761T C14408T A23403G G25563T C27208T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569383 LR794512
 2020-04-21 2020-04-21
 France IHUCOVID-0218
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569384 LR794508
 2020-04-21 2020-04-21
 France IHUCOVID-0219
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G6032A G10642T G11761T C14408T A23403G G25563T C27208T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569387 LR794518
 2020-04-21 2020-04-21
 France IHUCOVID-0224
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T A5570G G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569388 LR794519
 2020-04-21 2020-04-21
 France IHUCOVID-0225
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G C27741A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569389 LR794522
 2020-04-21 2020-04-21
 France IHUCOVID-0226
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T C29281T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_569390 LR794523
 2020-04-21 2020-04-21
 France IHUCOVID-0227
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25012A G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569394 LR794531
 2020-04-21 2020-04-21
 France IHUCOVID-0231
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G3338T C9891T C14408T G15438T C21597T A23403G G25563T C25731T AGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29746-

EPI_ISL_569395 LR794527
 2020-04-21 2020-04-21
 France IHUCOVID-0232
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C10582T C14408T G16968T A23403G G25563T C28253T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569397 LR794532
 2020-04-21 2020-04-21
 France IHUCOVID-0234
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569398 LR794526
 2020-04-21 2020-04-21
 France IHUCOVID-0235
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569399 LR794525
 2020-04-21 2020-04-21
 France IHUCOVID-0236
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569400 LR794535
 2020-04-21 2020-04-21
 France IHUCOVID-0237
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T G3328T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569401 LR794529
 2020-04-21 2020-04-21
 France IHUCOVID-0238
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T ATG1605- C3037T C3924T C7162T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569402 LR794528
 2020-04-21 2020-04-21
 France IHUCOVID-0239
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569403 LR794537
 2020-04-21 2020-04-21
 France IHUCOVID-0241
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G C27494T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569404 LR794530
 2020-04-21 2020-04-21
 France IHUCOVID-0242
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569405 LR794542
 2020-04-21 2020-04-21
 France IHUCOVID-0243
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C12513T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569406 LR794539
 2020-04-21 2020-04-21
 France IHUCOVID-0246
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C12513T C14408T C20628T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569407 LR794541
 2020-04-21 2020-04-21
 France IHUCOVID-0247
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C9886T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569408 LR794540
 2020-04-21 2020-04-21
 France IHUCOVID-0248
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T A9058G C14408T A23403G G25563T TGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29765-

EPI_ISL_569410 LR794544
 2020-04-21 2020-04-21
 France IHUCOVID-0250
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T A639G C3037T C14408T C15324T A23403G C27002T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_569411 LR794538
 2020-04-21 2020-04-21
 France IHUCOVID-0251
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T G1736A C3037T C14408T A23403G G25563T C25710T ACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29768-

EPI_ISL_569414 LR794550
 2020-04-21 2020-04-21
 France IHUCOVID-0256
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_569415 LR794552
 2020-04-21 2020-04-21
 France IHUCOVID-0257
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T C17125T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569416 LR794548
 2020-04-21 2020-04-21
 France IHUCOVID-0258
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569417 LR794556
 2020-04-21 2020-04-21
 France IHUCOVID-0259
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C10626T C14408T C15324T A23403G G27505T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569418 LR794555
 2020-04-21 2020-04-21
 France IHUCOVID-0261
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A18366G G22346T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569419 LR794554
 2020-04-21 2020-04-21
 France IHUCOVID-0262
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2037T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569420 LR794549
 2020-04-21 2020-04-21
 France IHUCOVID-0263
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T C19602T A23403G GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_569421 LR794545
 2020-04-21 2020-04-21
 France IHUCOVID-0266
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569422 LR794551
 2020-04-21 2020-04-21
 France IHUCOVID-0268
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569423 LR794546
 2020-04-21 2020-04-21
 France IHUCOVID-0269
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- C241T C2416T C3037T G3338T C14408T G15438T C21597T A23403G G25563T C25731T AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_569425 LR794558
 2020-04-21 2020-04-21
 France IHUCOVID-0274
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T A1198G C2416T C3037T C6401T C13458T C14408T C20946T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569426 LR794560
 2020-04-21 2020-04-21
 France IHUCOVID-0276
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569427 LR794562
 2020-04-21 2020-04-21
 France IHUCOVID-0280
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C6401T C13458T C14408T C20946T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569428 LR794561
 2020-04-21 2020-04-21
 France IHUCOVID-0281
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C9286T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569429 LR794564
 2020-04-21 2020-04-21
 France IHUCOVID-0282
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569431 LR794565
 2020-04-21 2020-04-21
 France IHUCOVID-0284
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G C24904T G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569433 LR794575
 2020-04-21 2020-04-21
 France IHUCOVID-0287
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A20294G A23403G G25563T G28682A GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_569434 LR794566
 2020-04-21 2020-04-21
 France IHUCOVID-0288
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G C23415T G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_569435 LR794577
 2020-04-21 2020-04-21
 France IHUCOVID-0290
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G353A C710A C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569436 LR794570
 2020-04-21 2020-04-21
 France IHUCOVID-0291
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T A14228G C14408T T21015C A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569438 LR794573
 2020-04-21 2020-04-21
 France IHUCOVID-0295
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_569440 LR794569
 2020-04-21 2020-04-21
 France IHUCOVID-0297
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C9286T C9360T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569441 LR794572
 2020-04-21 2020-04-21
 France IHUCOVID-0298
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569443 LR794571
 2020-04-21 2020-04-21
 France IHUCOVID-0300
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T AAGTCATTT686- C3037T C14408T A23403G G24998T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569445 LR794582
 2020-04-21 2020-04-21
 France IHUCOVID-0304
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C9286T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569446 LR794584
 2020-04-21 2020-04-21
 France IHUCOVID-0306
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C21727T A23403G G25563T T25825C AGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29704-

EPI_ISL_569447 LR794580
 2020-04-21 2020-04-21
 France IHUCOVID-0308
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T G29744T AGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29797-

EPI_ISL_569448 LR794581
 2020-04-21 2020-04-21
 France IHUCOVID-0309
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C9996T C14408T A23403G G25563T G29747T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569449 LR794578
 2020-04-21 2020-04-21
 France IHUCOVID-0316
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1427T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569451 LR794591
 2020-04-21 2020-04-21
 France IHUCOVID-0319
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C5365T G8371T C10277T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569458 LR794593
 2020-04-21 2020-04-21
 France IHUCOVID-0329
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T T13006C C14391T C14408T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569460 LR794592
 2020-04-21 2020-04-21
 France IHUCOVID-0333
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C4320T G8371T C14408T A23403G G25563T C26907A C29754T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569462 LR794588
 2020-04-21 2020-04-21
 France IHUCOVID-0336
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T C26622T T29536C AGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29704-

EPI_ISL_569464 LR794587
 2020-04-21 2020-04-21
 France IHUCOVID-0338
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T A14228G C14408T T21015C A23403G GGG28881AAC TGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29765-

EPI_ISL_569466 LR794602
 2020-04-21 2020-04-21
 France IHUCOVID-0342
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569467 LR794603
 2020-04-21 2020-04-21
 France IHUCOVID-0344
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T G2150A C3037T G11083T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569472 LR794598
 2020-04-21 2020-04-21
 France IHUCOVID-0354
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2062T C3037T C14408T C14724T C18877T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569473 LR794605
 2020-04-21 2020-04-21
 France IHUCOVID-0355
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569474 LR794611
 2020-04-21 2020-04-21
 France IHUCOVID-0361
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T C26907A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569475 LR794607
 2020-04-21 2020-04-21
 France IHUCOVID-0366
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C683T C2416T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569476 LR794610
 2020-04-21 2020-04-21
 France IHUCOVID-0369
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C241T C1059T C3037T C14408T A18366G A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_569481 LR794620
 2020-04-21 2020-04-21
 France IHUCOVID-0385
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T C19602T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569483 LR794621
 2020-04-21 2020-04-21
 France IHUCOVID-0388
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_569485 LR794619
 2020-04-21 2020-04-21
 France IHUCOVID-0391
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T C19602T A23403G GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_569489 LR794626
 2020-04-21 2020-04-21
 France IHUCOVID-0400
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T A6531T C14408T C14599T A23403G G25563T AGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29714-

EPI_ISL_569490 LR794632
 2020-04-21 2020-04-21
 France IHUCOVID-0401
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C14408T T20310C A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_569491 LR794627
 2020-04-21 2020-04-21
 France IHUCOVID-0405
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T A1198G C2416T C3037T C6401T C13458T C14408T C20946T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569492 LR794633
 2020-04-21 2020-04-21
 France IHUCOVID-0407
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C7728T A10323G T12496C C14408T A19368G G21938T A23403G GGG28881AAC AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_569493 LR794625
 2020-04-21 2020-04-21
 France IHUCOVID-0409
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C9286T C14408T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_569494 LR794629
 2020-04-21 2020-04-21
 France IHUCOVID-0411
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C4551T T5338C A13132G C14358T C14408T T18351C C21364T A23403G G24867T G25563T G28851A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569495 LR794628
 2020-04-21 2020-04-21
 France IHUCOVID-0412
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C4551T C14408T T18351C A23403G G25563T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_569496 LR794637
 2020-04-21 2020-04-21
 France IHUCOVID-0417
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C10582T C14408T G16968T A23403G G25563T C28253T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569497 LR794631
 2020-04-21 2020-04-21
 France IHUCOVID-0419
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C3619T G8371T C14408T A20294G A23403G G25563T G29779C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569498 LR794642
 2020-04-21 2020-04-21
 France IHUCOVID-0423
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C12924T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569499 LR794643
 2020-04-21 2020-04-21
 France IHUCOVID-0424
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569500 LR794641
 2020-04-21 2020-04-21
 France IHUCOVID-0428
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C6401T T10480C C13458T C14408T C20946T A23403G G25563T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_569502 LR794638
 2020-04-21 2020-04-21
 France IHUCOVID-0430
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T A27256T A28037G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569503 LR794639
 2020-04-21 2020-04-21
 France IHUCOVID-0431
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569504 LR794651
 2020-04-21 2020-04-21
 France IHUCOVID-0432
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1959T C2416T C3037T G8371T C14408T A23403G G25563T C28312T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569505 LR794654
 2020-04-21 2020-04-21
 France IHUCOVID-0433
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T G27996T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569507 LR794645
 2020-04-21 2020-04-21
 France IHUCOVID-0435
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T G19999T A23403G G25563T TCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29729-

EPI_ISL_569508 LR794647
 2020-04-21 2020-04-21
 France IHUCOVID-0438
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G3338T C14408T G15438T C21597T A23403G G25563T C25731T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569509 LR794650
 2020-04-21 2020-04-21
 France IHUCOVID-0439
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G G29477T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569510 LR794648
 2020-04-21 2020-04-21
 France IHUCOVID-0440
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T T2578C C3037T C6401T C13105T C13458T C14408T C20946T C21846T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569511 LR794655
 2020-04-21 2020-04-21
 France IHUCOVID-0441
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T T2578C C3037T C6401T C13105T C13458T C14408T C20946T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569512 LR794652
 2020-04-21 2020-04-21
 France IHUCOVID-0444
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C5869T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569513 LR794649
 2020-04-21 2020-04-21
 France IHUCOVID-0445
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T A5336G C9166T C14408T C15324T G21778A A23403G G28541A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569514 LR794646
 2020-04-21 2020-04-21
 France IHUCOVID-0446
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T G16020A A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569515 LR794653
 2020-04-21 2020-04-21
 France IHUCOVID-0447
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569516 LR794657
 2020-04-21 2020-04-21
 France IHUCOVID-0449
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T C25782T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569517 LR794660
 2020-04-21 2020-04-21
 France IHUCOVID-0450
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C6539T G11083T C14408T G19999T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569518 LR794659
 2020-04-21 2020-04-21
 France IHUCOVID-0451
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C3429T C6636T G8371T C14408T A23403G G25563T G26718T C27942T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569520 LR794658
 2020-04-21 2020-04-21
 France IHUCOVID-0453
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T A12334T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569521 LR794661
 2020-04-21 2020-04-21
 France IHUCOVID-0455
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1493A C2416T C3037T C7521T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569522 LR794662
 2020-04-21 2020-04-21
 France IHUCOVID-0456
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569541 LR794668
 2020-04-21 2020-04-21
 France IHUCOVID-0483
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T C15324T A23403G C25433T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569542 LR794671
 2020-04-21 2020-04-21
 France IHUCOVID-0485
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T C3037T C14408T A23403G G24998T C26256T GGG28881AAC C29167T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569543 LR794670
 2020-04-21 2020-04-21
 France IHUCOVID-0487
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T G2150A C3037T G11083T C14408T A23403G G25563T ACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29761-

EPI_ISL_569544 LR794677
 2020-04-21 2020-04-21
 France IHUCOVID-0488
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T C3037T C11289T C14408T A23403G G24998T GGG28881AAC C29167T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569545 LR794675
 2020-04-21 2020-04-21
 France IHUCOVID-0489
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_569546 LR794673
 2020-04-21 2020-04-21
 France IHUCOVID-0490
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T C27684T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569548 LR794665
 2020-04-21 2020-04-21
 France IHUCOVID-0493
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C10582T C14408T C16226T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569549 LR794666
 2020-04-21 2020-04-21
 France IHUCOVID-0494
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G2086T C2416T C3037T G8371T C14408T T23042G A23403G G25563T G25909T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569550 LR794676
 2020-04-21 2020-04-21
 France IHUCOVID-0495
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T T13006C C14391T C14408T A23403G C25521T G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569551 LR794684
 2020-04-21 2020-04-21
 France IHUCOVID-0496
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C14408T A23403G G25563T GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_569552 LR794682
 2020-04-21 2020-04-21
 France IHUCOVID-0497
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T G8179T G8858A G11540T C14408T C15324T A23403G G25440T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569553 LR794678
 2020-04-21 2020-04-21
 France IHUCOVID-0498
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569554 LR794681
 2020-04-21 2020-04-21
 France IHUCOVID-0499
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATA1- C241T C2416T C3037T G8371T C14408T A23403G G25563T C28775T GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_569555 LR794680
 2020-04-21 2020-04-21
 France IHUCOVID-0500
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G625T C2416T T2578C C3037T C6401T C13105T C13458T C14408T C20946T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569557 LR794679
 2020-04-21 2020-04-21
 France IHUCOVID-0502
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T A1198G C2416T C3037T C6401T C13458T C14408T A20382T C20946T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

LR794471
 2020-04-21 2020-04-21
 France IHUCOVID-0147
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

LR794536
 2020-04-21 2020-04-21
 France IHUCOVID-0240
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T C3037T C14408T G14857T A23403G A26161- GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

LR794559
 2020-04-21 2020-04-21
 France IHUCOVID-0272
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T C16816A A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

LR794606
 2020-04-21 2020-04-21
 France IHUCOVID-0378
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T G25909T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

LR794609
 2020-04-21 2020-04-21
 France IHUCOVID-0360
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C313T C3037T G8371T C14408T A23403G T24079C GGG28881AAC AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

LR794613
 2020-04-21 2020-04-21
 France IHUCOVID-0376
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G3338T C14408T G15438T C21597T A23403G G25563T C25731T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

LR794630
 2020-04-21 2020-04-21
 France IHUCOVID-0416
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

LR794667
 2020-04-21 2020-04-21
 France IHUCOVID-0491
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T T13006C C14391T C14408T A23403G G25563T C25688T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT628047
 2020-04-21 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S667/2020
 ATT1- C241T C3037T A5538T C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628051
 2020-04-21 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S658/2020
 ATTAAAGGTTT1- C3311A C8782T A13782G G17671T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628054
 2020-04-21 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S661/2020
 AT1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628056
 2020-04-21 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S656/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628057
 2020-04-21 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S660/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628067
 2020-04-21 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S657/2020
 ATTAAAG1- C241T C1059T C3037T C10582T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628068
 2020-04-21 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S663/2020
 ATTAAAGGTTTAT1- G1401A C8782T C17747T A17858G C18060T T28144C C29420T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628074
 2020-04-21 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S659/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT628080
 2020-04-21 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S654/2020
 ATTAAAGGTT1- G1401A C2675T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT810477
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1360-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C13011T C14408T G17014T A23403G G25217A G25563T G27621T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810478
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1362-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C14818T C16762T C18264T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810497
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1415-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C9430T C14408T G19656T G19969A A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810498
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1416-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810501
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1422-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28531T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810503
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1426-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G12718A C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810504
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1491-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16193T A23403G C25499T G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810518
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1512-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810672
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1220-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810781
 2020-04-21 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1707-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T C27494T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810946
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0232-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G943A C3037T A9419G C14408T A20268G A23403G G28003T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810992
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0372-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811002
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0387-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811008
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0399-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2395T C3037T A10042T C14408T C19113T A20268G G21786T A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811016
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0410-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T G16853T A23403G T26960C GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811018
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0412-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811276
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0623-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811277
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0624-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G4510T C4582T C11102T C14408T A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811278
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0626-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G A23414G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811279
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0627-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C4965T C14408T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811280
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0628-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T A19941G G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811404
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0839-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T A19941G G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811473
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1019-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G A23414G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811477
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1025-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A G8371T C14408T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811482
 2020-04-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1035-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G4510T C4582T C11102T C14408T A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT880878
 2020-04-21 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7441/2020
 C241T T809C C3037T A7929G C14408T C23297T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT880879
 2020-04-21 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7470/2020
 C241T C3037T A7929G C14408T A23403G G24872K GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT882313
 2020-04-21 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7462/2020
 C241T C3037T C8664Y C8964Y G10610K C14408T C14708Y A18328W G18505R C20283Y A23403G C23595Y C24299Y C24444Y T24656W G28079K C28448Y GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT882314
 2020-04-21 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7467/2020
 C241T C3037T T9757C C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT967920
 2020-04-21 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6186/2020
 C241T C3037T C14408T C16830T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT967921
 2020-04-21 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6189/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT967922
 2020-04-21 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6192/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

MW023415
 2020-04-21 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1249/2020
 A1- C241T C1059T C3037T C3177T A4386G T6685C C10319T C14408T A23403G G25563T ATT27759- C27964T G28763A C29250T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_435055 MT435085
 2020-04-22 2020-05-02
 India SARS-CoV-2/human/IND/GBRC8/2020
 C241T C2836T C3037T C14408T G16078A C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_435398
 2020-04-22 2020-05-04
 United States hCoV-19/USA/WI-GMF-01551/2020
 C241T C1059T C1551T C1568T C3037T C4230T C9866T G12322A C14408T A14747G A20755C A23403G G25563T

EPI_ISL_435487
 2020-04-22 2020-05-05
 United States hCoV-19/USA/NY-NYUMC420/2020
 C241T GTT669- C1059T C3037T C14408T A23403G A25449G G25563T G27962T

EPI_ISL_435488
 2020-04-22 2020-05-05
 United States hCoV-19/USA/NJ-NYUMC421/2020
 C241T C1059T C3037T A11595G C14408T A23403G G25563T C26681T C28674T

EPI_ISL_435491
 2020-04-22 2020-05-05
 United States hCoV-19/USA/NY-NYUMC424/2020
 C241T C1059T C3037T C9746T C11224T C14408T A23403G G25563T

EPI_ISL_435542
 2020-04-22 2020-05-05
 United States hCoV-19/USA/NY-NYUMC477/2020
 C241T C1059T C3037T C12880T C14408T G16858A A18019G A23403G G25135T G25563T

EPI_ISL_435543
 2020-04-22 2020-05-05
 United States hCoV-19/USA/NY-NYUMC478/2020
 C241T C3037T C6040T C14408T G18318A A23403G GGG28881AAC

EPI_ISL_435544
 2020-04-22 2020-05-05
 United States hCoV-19/USA/NY-NYUMC479/2020
 C241T C1059T C3037T C14408T C18457T A23403G C24370T G25563T

EPI_ISL_435694
 2020-04-22 2020-05-05
 Singapore hCoV-19/Singapore/89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6310A C6312A G11083T C13730T C19524T C23929T C28311T CCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29787-

EPI_ISL_436641 MT438718
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1000/2020
 ATTAAAGGTTT1- C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_436643 MT438720
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1002/2020
 ATTAAAGGTTTAT1- C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436645 MT438722
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1004/2020
 C25692T

EPI_ISL_436647 MT438724
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1006/2020
 ATT1- C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436648 MT438725
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1007/2020
 ATTAAAGGTTTA1- T13C G10617A C17977Y C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436650 MT438727
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1009/2020
 ATT1- A4T C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436651 MT438728
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1010/2020
 A1- C1878T C25692T

EPI_ISL_436652 MT438729
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1011/2020
 ATTAAAGGTTT1- C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436653 MT438730
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1012/2020
 C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_436654 MT438731
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1013/2020
 ATTA1- T12910A C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436657 MT438734
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1016/2020
 ATTAAAGGTTT1- C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436659 MT438736
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1018/2020
 ATTAAAGGTTTA1- T13C C5812Y C6363T C20611T C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436660 MT438737
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1019/2020
 AT1- C5812T C6363T C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436661 MT438738
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1020/2020
 ATTAAAGGTTTA1- C6363T C25692T G28028T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_436662 MT438739
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1021/2020
 ATTA1- C6363T C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436664 MT438741
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1023/2020
 ATTAAAGGTTTATAC1- C5812T C6363T C25692T

EPI_ISL_436665 MT438742
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1024/2020
 C5812T C6363T C25692T

EPI_ISL_436666 MT438743
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1025/2020
 A1- C5812T C6363T C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_436667 MT438744
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1026/2020
 ATTAAAGGTTT1- A301G G10617A G18379A C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436669 MT438746
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1028/2020
 ATTA1- C25692T AAAAAAAAAAAAAA29890-

EPI_ISL_436670 MT438747
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1029/2020
 ATTA1- C6363T C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875C

EPI_ISL_436671 MT438748
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1030/2020
 A301G G10617A G18379A C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436672 MT438749
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1031/2020
 ATTAAAGGTTTA1- C10277T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436673 MT438750
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1032/2020
 ATTAAAGGTTTA1- C10277T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436674 MT438751
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1033/2020
 ATT1- G319A C10277T G13723A

EPI_ISL_436676 MT438753
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1035/2020
 C10277T C27500T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436677 MT438754
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1036/2020
 A1- C10277T C27500T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436679 MT438756
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1038/2020
 ATT1- C10277T C19881T A23796R

EPI_ISL_436680 MT438757
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1039/2020
 C10277T G13723A AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_436681 MT438758
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1040/2020
 C10277T

EPI_ISL_436683 MT438760
 2020-04-22 2020-05-07
 United States SARS-CoV-2/human/USA/CA-CZB-1042/2020
 C2574T T5449C C10277T T14151C C29625T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_438217
 2020-04-22 2020-05-12
 United States hCoV-19/USA/WA-S664/2020
 C8782T G15406A C17010T C17747T A17858G C18060T T28144C

EPI_ISL_438218
 2020-04-22 2020-05-12
 United States hCoV-19/USA/WA-S665/2020
 G1401A C7047T C8782T C17747T A17858G C18060T A19308G T28144C

EPI_ISL_438219
 2020-04-22 2020-05-12
 United States hCoV-19/USA/WA-S666/2020
 G1401A C8782T A16305G C17747T A17858G C18060T A19308G T28144C

EPI_ISL_438221
 2020-04-22 2020-05-12
 United States hCoV-19/USA/WA-S668/2020
 G1401A C8782T C17747T A17844G A17858G C18060T A19308G T28144C

EPI_ISL_438587
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81E85/2020
 C241T C3037T C14408T C19366T C19955T A23403G GGG28881AAC

EPI_ISL_438588
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81E94/2020
 G488A A1691G A2480G C2558T C6558T A9634T G11083T C14805T G23402A C26058T G26144T

EPI_ISL_438592
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81ED0/2020
 C241T C1059T C1218T C3037T C9286T C14408T A23403G G25563T G28378T G28899C

EPI_ISL_438593
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81EEF/2020
 C241T T1294C C3037T C14408T A23403G G27008T GGG28881AAC -29686C

EPI_ISL_438599
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81F73/2020
 C635T G11083T C14805T C17010T T17247C G26144T

EPI_ISL_438605
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81FDD/2020
 C241T C3037T T4351C C14408T C16289T A23403G G25429T

EPI_ISL_438663
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82B50/2020
 C241T C3037T C14408T A15657G A23403G

EPI_ISL_438664
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82B6F/2020
 G101A C241T C3037T C6336T C10789T C11606T C14408T A23403G C25624T C26002A GGG28881AAC

EPI_ISL_438665
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82B7E/2020
 C241T C3037T A3235C C13730T C14408T A23403G G25429T

EPI_ISL_438676
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82C8A/2020
 C241T C3037T C14408T C19488T A23403G GGG28881AAC

EPI_ISL_438679
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82CC6/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T G29227A

EPI_ISL_438684
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83D1D/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_438999
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G C26270T G26272T C28708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439185
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2341/2020
 C241T C3037T G10523C T14079C C14408T G16858T A23403G C26150A GGG28881AAC

EPI_ISL_439187
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2357/2020
 C241T C1059T C1076T C3037T C9598T C10582T C14408T G15380T G22309A A23403G G25563T C26461T

EPI_ISL_439188
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2358/2020
 G714A A2480G C2558T G11083T C14805T G26144T

EPI_ISL_439189
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2359/2020
 C241T C3037T C14408T A20268G A23403G C26873T C28854T

EPI_ISL_439190
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2361/2020
 C241T C3037T C14408T C18788T T19839C G22918T A23403G A24862G GGG28881AAC

EPI_ISL_439191
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2362/2020
 C241T C3037T C3656T C14408T A23403G GGG28881AAC

EPI_ISL_439193
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2372/2020
 C241T G2883A C3037T C3619T C14408T A20268G A23403G G29734C

EPI_ISL_439194
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2373/2020
 C7423T C7869T

EPI_ISL_439195
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2377/2020
 C241T C3037T C13356T C14408T C18788T T19839C A23403G A24862G GGG28881AAC C29272T

EPI_ISL_439197
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2385/2020
 C241T C1860T C3037T C14408T A20268G A23403G G25218T C26873T C28854T

EPI_ISL_439198
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2389/2020
 C241T C3037T T10168C C14408T A20268G A23403G C28854T

EPI_ISL_439199
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2398/2020
 C241T C3037T C14408T A20268G G22225T A23403G G26056A T29753C

EPI_ISL_439200
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2403/2020
 C241T A2725G C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_439201
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2405/2020
 C241T A2215G C3037T C8344T A10874G C14408T A23403G G25429T G25440A T26677C

EPI_ISL_439202
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2409/2020
 C241T C3037T C4551T T5161A C14408T T17126C A20268G A23403G G29742T

EPI_ISL_439203
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2412/2020
 C241T C1059T C3037T A11298G C14408T C15368T A16474G A23403G G25563T G28882T

EPI_ISL_439204
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2416/2020
 C241T C3037T G10097A C14408T A23403G C23731T C25160T G28580T GGG28881AAC

EPI_ISL_439205
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2419/2020
 C241T C3037T C14408T C18788T T19839C A23403G A24862G GGG28881AAC

EPI_ISL_439215
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2463/2020
 C241T C3037T C3543T C10232T C14408T C16289T A23403G G24368T G25429T

EPI_ISL_439251
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2659/2020
 C241T C3037T C14408T A20268G A23403G C25002T C28854T

EPI_ISL_440898
 2020-04-22 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9BAA2/2020
 ATG1605- C6696T G10256T C11001T A27392G

EPI_ISL_445056
 2020-04-22 2020-05-14
 Luxembourg hCoV-19/Luxembourg/LNS9865959/2020
 A187G C241T C3037T G9053T C14408T G17014T G20991A C22480T A23403G T25090C G29202T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_445240
 2020-04-22 2020-05-15
 Sweden hCoV-19/Sweden/20-07691/2020
 C241T C1059T C1427T G2659T C2842A G2849T C3037T G9130T C12020T A13338G C14408T C23191T A23403G G24368T G25250T G25537T G25563T

EPI_ISL_445242
 2020-04-22 2020-05-15
 Sweden hCoV-19/Sweden/20-07772/2020
 C241T C3037T T11491A C13667T C14195A C14408T A23403G C29268T

EPI_ISL_447205 MT506700
 2020-04-22 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20235/2020
 C241T C1059T A1622G C3037T C13862T C14408T A23403G G25563T

EPI_ISL_447219 MT506697
 2020-04-22 2020-05-16
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20249/2020
 C241T C1059T C3037T C13862T C14408T A23403G G25563T

EPI_ISL_447452
 2020-04-22 2020-05-17
 Israel hCoV-19/Israel/130711367/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T G29540A AAAAAAAAAAAA29892-

EPI_ISL_448210
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5609T C5730T T7020G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_448213
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A23572G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_448214
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_448215
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T A16856G C17470T G24812T C26088T T28144C G28580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_448216
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20773T A23403G T23590C C25782T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_448220
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1573G C2399T C3037T C14408T A23403G GGG28881AAC G29705T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_448313
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/England/NORW-E944D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2940T C3037T C14408T C21648T A23403G C28603Y

EPI_ISL_448314
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/England/NORW-E946B/2020
 C241T C3037T G7214A C14408T A23403G G28077T GGG28881AAC C29870B

EPI_ISL_448315
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9498/2020
 C241T C3037T C8367T C14408T C19524T C21587T A23403G T27652C GGG28881AAC

EPI_ISL_448316
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/England/NORW-E94A7/2020
 C241T A2775G C2940T C3037T C5672T C14408T C21648T A23403G G23426T

EPI_ISL_448321
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/England/NORW-E95A4/2020
 G219K C241T C3037T C14408T C14898T A23403G C28754T GGG28881AAC

EPI_ISL_448322
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/England/NORW-E960B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_448324
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9665/2020
 ATT1- C241T C1968Y C3037T C13862T C14408T T19330C T22514Y A23403G C28836T C29870M

EPI_ISL_448326
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/England/NORW-E96B0/2020
 ATTA1- C241T C3037T C14408T A23403G A24232G G25429T

EPI_ISL_448327
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/England/NORW-E96CF/2020
 ATTA1- C241T C3037T C13862T C14408T A15534R T19330C A23403G C28836T C29870Y

EPI_ISL_448348
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9A0F/2020
 A1- C241T C2940T C3037T C14408T C21648T A23403G

EPI_ISL_448443
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110F96/2020
 C241T G2393A C3037T C14408T C16289T T18858C A23403G G25429T

EPI_ISL_448444
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110FA5/2020
 A1515G C9223T G11083T C14805T T17247C A20055G G26144T

EPI_ISL_449191
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4827T A6371G G13920T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449193
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G C26058T C27493T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449195
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449196
 2020-04-22 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450266
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII7880S/2020
 C241T C1191T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_450273
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8350S/2020
 C241T C3037T C3393T C14408T A23403G GGG28881AAC

EPI_ISL_450274
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8371S/2020
 C241T C3037T C13356T C14408T A20268G A23403G G28562A A28692C

EPI_ISL_450275
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8373S/2020
 C241T C3037T C13356T C14408T A20268G A23403G G28562A A28692C

EPI_ISL_450276
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8380S/2020
 C241T C3037T C14408T A20268G A23403G G28562A A28692C

EPI_ISL_450277
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8372S/2020
 C241T C583T C3037T C13356T C14408T A20268G A23403G G28562A A28692C

EPI_ISL_450278
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8388S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_450279
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8393S/2020
 C241T C1191T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_450280
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8397S/2020
 C241T C1191T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_450281
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8402S/2020
 C241T C1191T C3037T C3393T A5264G C14408T G22344A A23403G GGG28881AAC

EPI_ISL_450282
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8409S/2020
 C241T C1191T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_450283
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8417S/2020
 C241T C1191T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_450284
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8418S/2020
 C241T C1191T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_450285
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8425S/2020
 C241T C1191T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_450286
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8428S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_450287
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8429S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC

EPI_ISL_450293
 2020-04-22 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8955S/2020
 C241T C3037T C14408T G15743A A23403G GGG28881AAC

EPI_ISL_450814
 2020-04-22 2020-05-22
 Sweden hCoV-19/Sweden/20-07734/2020
 C241T C3037T C10369T C14408T C19032T A23403G GGG28881AAC

EPI_ISL_450816
 2020-04-22 2020-05-22
 Sweden hCoV-19/Sweden/20-07739/2020
 C4321T C8782T G11230T T15804C C18647T C23896T T28144C G28167A G28878A G29742A

EPI_ISL_450817
 2020-04-22 2020-05-22
 Sweden hCoV-19/Sweden/20-07743/2020
 C241T C1059T C3037T C5157T C14408T C15048A A23403G G24368T G25563T

EPI_ISL_451646
 2020-04-22 2020-05-25
 Poland hCoV-19/Poland/Pom5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T A6693G C8386T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_452215
 2020-04-22 2020-05-27
 India hCoV-19/India/NIV-QC-797/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1820A C6310A C6312A G11083T C13730T C19524T G23593T C23929T C28311T C28720T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_452831 MT558682
 2020-04-22 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C6638T C14408T G19563T A23403G A24069T G25563T C26955T G29422T C29870A

EPI_ISL_452832 MT558683
 2020-04-22 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0259/2020
 ATT1- A34T C241T C1059T C3037T C6638T C14408T G19563T A23403G A24069T G25563T C26955T G29422T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_452839 MT558690
 2020-04-22 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0266/2020
 ATTAAAGGT1- C241T C3037T C9521T C14408T C15324T A21137G A23403G C23635T

EPI_ISL_452840 MT558691
 2020-04-22 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0271/2020
 AT1- C241T G598A C3037T C8664A G8851A C14408T C21575T A23403G A25505C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_452841 MT558692
 2020-04-22 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0272/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T G17259T A23403G G25563T C27964T

EPI_ISL_452842 MT558693
 2020-04-22 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C12400T C14408T A23403G G25563T C29366T G29868A C29870A

EPI_ISL_452843 MT558694
 2020-04-22 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0274/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C8664A G8851A C14408T A23403G A25505C GGG28881AAC C29870A

EPI_ISL_452844 MT558695
 2020-04-22 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0275/2020
 ATTAAAGGTT1- C241T C3037T C8664A G8851A C14408T A23403G A25505C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_452845 MT558696
 2020-04-22 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0276/2020
 AT1- C241T C3037T C8664A G8851A C14408T A23403G A25505C GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_452846 MT558697
 2020-04-22 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0277/2020
 ATTA1- C241T C3037T C8664A G8851A C14408T A23403G A25505C GGG28881AAC

EPI_ISL_452847 MT558698
 2020-04-22 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C829T C3037T C8664A G8851A C10319T C14408T A23403G A25505C G25784C GGG28881AAC G29745T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_452848 MT558699
 2020-04-22 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0279/2020
 A1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T G29540A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_452849 MT558700
 2020-04-22 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8664A G8851A C14408T A23403G A25505C GGG28881AAC C29870A

EPI_ISL_452850 MT558701
 2020-04-22 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0281/2020
 ATTA1- C241T C3037T T4615C T9172C A10948G C14408T A23403G G26730T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_452852 MT558703
 2020-04-22 2020-05-27
 United States SARS-CoV-2/human/USA/VA-DCLS-0283/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C11916T C14408T C18998T C21058T A23403G G25563T G25947C C29077T G29540A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_453542
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORT-291855/2020
 C222T C241T C3037T C14408T T15225C A20268G A23403G

EPI_ISL_453548
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E6FD6/2020
 ATT1- C241T C2940T C3037T C14408T C21648T A23403G

EPI_ISL_453551
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E70C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G9190K G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC G29017R

EPI_ISL_453552
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E710C/2020
 ATTA1- C241T C3037T C8655T T11313C C14408T A23403G GGG28881AAC

EPI_ISL_453554
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E71EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1684T C3037T C12915T C14408T G14829T A20268G G21255T A23403G

EPI_ISL_453597
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E947A/2020
 C241T C3037T C8717T C14408T A23403G G25429T

EPI_ISL_453598
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E94B6/2020
 ATTAAAGGTTTATAC1- C1314T C4410Y A8379R G11083T C14805T T17247C G26144T

EPI_ISL_453599
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E94D4/2020
 A1- A1072G A1515G T7612C C9223T G11083T G12797A C14805T C17069T T17247C A21625G C21855T A23403R G26144T

EPI_ISL_453600
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E94E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T A476G C3037T C10507T C14408T A16638G C18877T A23403G G25563T

EPI_ISL_453601
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E9559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A19392G A19865G A23403G

EPI_ISL_453603
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E9595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A24232G G25429T

EPI_ISL_453604
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E95D1/2020
 ATTAAAGGTTTATACCT1- C241T A2775G C2940T C3037T C14408T C21648T A23403G

EPI_ISL_453605
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E95E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2940T C3037T C4543T C14408T C21648T A23403G

EPI_ISL_453606
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E95FF/2020
 ATTAAAGGTT1- C1314T G11083T C14805T T17247C G26144T T27451A C29171T

EPI_ISL_453607
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E9629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2940T C3037T C14408T C21648T A23403G G29508T

EPI_ISL_453608
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E9638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G A24232G G25429T

EPI_ISL_453610
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E9674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C11074Y C14408T G22992A A23403G GGG28881AAC

EPI_ISL_453613
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/NORW-E96ED/2020
 AT1- C241T C2940T C3037T C14408T C21306T A23403G

EPI_ISL_453699
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C225F/2020
 C241T C1420T C3037T C14408T C18713T A23403G GGG28881AAC G29747T

EPI_ISL_453706
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C3C23/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T T24397A C27513T GGG28881AAC

EPI_ISL_453715
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C5614/2020
 C241T C874T C2416T C3037T C11620T T13114C C14408T G16245A C19524T A23403G G25563T G26233T

EPI_ISL_453721
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C7102/2020
 C241T C3037T C14408T A23403G C25276T C26224T G28198T GGG28881AAC

EPI_ISL_453724
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C7ECF/2020
 C241T C2676T C3037T C5777T C14408T T19839C T22207C A23403G C26681T GGG28881AAC

EPI_ISL_453730
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C88DF/2020
 ATG1605- C6016T C6696T C11001T C12053T C27005T

EPI_ISL_453742
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CB423/2020
 C241T AAGTCATTT686- C3037T C14408T A15847G A18468G A23403G A28065C GGG28881AAC

EPI_ISL_453745
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CBA03/2020
 C241T C3037T G7736A C14408T C15324T A23403G

EPI_ISL_453750
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CD38E/2020
 C241T C1190T C3037T C8960T C10186T C14408T A23403G GGG28881AAC

EPI_ISL_453751
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CD500/2020
 C241T C3037T A3421G C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_453760
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CFDAC/2020
 C241T C3037T G7736A C14408T C15324T A23403G

EPI_ISL_453766
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/SHEF-D18B5/2020
 C241T C3037T C14408T A23403G T28098C GGG28881AAC

EPI_ISL_453768
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/SHEF-D1D3E/2020
 C241T C3037T C14408T C18713T C21618T A23403G C25047T GGG28881AAC C29095T G29747T

EPI_ISL_453769
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/SHEF-D1F65/2020
 C241T C3037T C14408T A23403G C25603T GGG28881AAC

EPI_ISL_453770
 2020-04-22 2020-05-27
 United Kingdom hCoV-19/England/SHEF-D2104/2020
 C241T C3037T T10522C C14408T G22427A A23403G G25720T G27441T GGG28881AAC

EPI_ISL_454282
 2020-04-22 2020-05-28
 Portugal hCoV-19/Portugal/PT0559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C1480T C3037T C12473T C14408T A23403G G25273T C28657T GGG28881AAC G29422T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454283
 2020-04-22 2020-05-28
 Portugal hCoV-19/Portugal/PT0560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C1480T C3037T C12473T C14408T A23403G G25273T C28657T GGG28881AAC G29422T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454503
 2020-04-22 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/21927/2020
 C2594T G6320T C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454567
 2020-04-22 2020-05-28
 India hCoV-19/India/NIV-QC-796/2020
 C241T C313T C3037T C5700A T10771C C14408T G23282C A23403G G25481A T28688C GGG28881AAC A29827T G29830T

EPI_ISL_454783
 2020-04-22 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10034/2020
 ATTAAA1- C241T C3037T A3988G T11638C C12412T C14408T A23403G G24872T GGG28881AAC C29708T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_454784
 2020-04-22 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10035/2020
 ATTAAA1- C241T C3037T A3988G T11638C C12412T C14408T A23403G G24872T GGG28881AAC C29708T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_456153
 2020-04-22 2020-06-02
 Colombia hCoV-19/Colombia/INS-101935/2020
 C241T C3037T C14408T C18877T A23403G G25563T G26849T

EPI_ISL_456767
 2020-04-22 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3167/2020
 C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_457119
 2020-04-22 2020-06-02
 United Kingdom hCoV-19/England/EXET-13597F/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457867
 2020-04-22 2020-06-02
 Kenya hCoV-19/Kenya/P1667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460774
 2020-04-22 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13377A C14408T G17280T A23403G G25563T A28792T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460775
 2020-04-22 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17331T T17454C A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460786
 2020-04-22 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460924
 2020-04-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460939
 2020-04-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T C10408T G11596T C14408T C18555T A23403G C26351T A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460946
 2020-04-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T C1594T C3037T C9712T C11109T C14408T C16887T A23403G G25563T G25770A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460947
 2020-04-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T C1594T C3037T C9712T C11109T C14408T C16887T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461017
 2020-04-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7164T A11438G C11878T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461019
 2020-04-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4827T A10323G A11438G C14408T A23403G C24130T C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461020
 2020-04-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461177
 2020-04-22 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461193
 2020-04-22 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C19718T A23403G C23731T T25403C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461351
 2020-04-22 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C13011T C14408T G20568A A23403G G23948T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461596
 2020-04-22 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR2931/2020
 C241T C3037T C8334T C14408T C19089T C22879A A23403G

EPI_ISL_461597
 2020-04-22 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR2933/2020
 C241T C3037T C14408T C15324T C18904T A23403G G25606T

EPI_ISL_461598
 2020-04-22 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR2934/2020
 C241T C3037T G3689A T11660A C14408T A23403G G25429T A28841G

EPI_ISL_461600
 2020-04-22 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR2940/2020
 C241T C3037T C14408T C22879A A23403G

EPI_ISL_461604
 2020-04-22 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR2948/2020
 C241T C3037T G3689A T11660A C14408T A23403G G25429T A28841G

EPI_ISL_461605
 2020-04-22 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR2950/2020
 C241T C3037T C10798A C13862T C14408T C21638T G23126T A23403G C28836T

EPI_ISL_461606
 2020-04-22 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR2951/2020
 C241T C1938T C3037T C12053T C14408T A23403G G25088T T25496C GGG28881AAC

EPI_ISL_461763
 2020-04-22 2020-06-06
 United Kingdom hCoV-19/England/LOND-D6A41/2020
 C241T C3037T C14408T C17795T A23403G GGG28881AAC

EPI_ISL_462315
 2020-04-22 2020-06-08
 Singapore hCoV-19/Singapore/197/2020
 C6310A C6312A C9532T G11083T C13730T G15789R C19524T C23185T C23929T C28311T C29679Y A29799G AAAAAAAAAAAA29892-

EPI_ISL_462438 MT569474
 2020-04-22 2020-06-05
 Serbia SARS-CoV-2/human/SRB/KV77-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7749T C14408T T18471C C18877T C21707T A23403G G25563T A28910T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462470
 2020-04-22 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/ChVir7402/2020
 ATTAAAGGTT1- C241T C1594T C3037T C11109T C14408T G20356T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463094 MT609558
 2020-04-22 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0288/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C C28000T C29077T G29540A C29870A

EPI_ISL_463328 MT642216
 2020-04-22 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S838/2020
 ATTAAAGGTTT1- T634C C8782T G11417T G15406A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463333 MT642305
 2020-04-22 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S843/2020
 ATTAAAGG1- A4236G G11083T G11426T C14805T T25655C C25714T C25904T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463334 MT642293
 2020-04-22 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S844/2020
 AT1- C8782T G15406A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463352 MT642341
 2020-04-22 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S862/2020
 ATTAAAGGTTTA1- G1401A C8782T A13986G A16165G C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463353 MT642423
 2020-04-22 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S863/2020
 AT1- G1401A C8782T C17747T A17858G C18060T A19308G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463355 MT642235
 2020-04-22 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S865/2020
 ATTAAAGGTTTAT1- C241T C1059T C1931A C3037T C6040T C11036T C14408T G14668A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463378 MT642353
 2020-04-22 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S888/2020
 ATTAAAGGTTT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463392 MT642244
 2020-04-22 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S902/2020
 ATTAAAGGTTTAT1- G1401A C8782T C13297T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463416 MT642364
 2020-04-22 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S926/2020
 AT1- C241T C1059T C3037T C14408T G20134T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_464061
 2020-04-22 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0045/2020
 C241T C1059T C2933T C3037T C3096T G3971T C6578T C14408T G21800A A23403G G25563T G28368A

EPI_ISL_465417
 2020-04-22 2020-06-11
 United Kingdom hCoV-19/England/20176047004/2020
 C241T C3037T C4002T G10097A G12514T C13536T C14408T A23403G A23524C C23731T GGG28881AAC

EPI_ISL_466891
 2020-04-22 2020-06-12
 Germany hCoV-19/Germany/BAV-MVP0218/2020
 C241T C313T C3037T C4093T C13059T C14178T C14408T A23403G GGG28881AAC

EPI_ISL_467391
 2020-04-22 2020-06-13
 United States hCoV-19/USA/NY-NYUMC898/2020
 C241T C619T C3037T C14408T A23403G G25563T

EPI_ISL_467799 MT680233
 2020-04-22 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0404/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_467800 MT680234
 2020-04-22 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T ATAGTT6510- C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_467801 MT680235
 2020-04-22 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0407/2020
 ATT1- C241T C2416T C3037T C12974T C14408T A23403G G25563T G26233T

EPI_ISL_468321
 2020-04-22 2020-06-16
 Brazil hCoV-19/Brazil/SPBR-516/2020
 C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_468485 MT628210
 2020-04-22 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1540/2020
 A1- C37T C203Y C241T C379A C1059T C3037T C4927Y C14408T A23403G C23435Y C24138Y C25521Y G25563T C28253Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468601 MT631793
 2020-04-22 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1657/2020
 A4W C241T C379A C1059T C3037T C7376M C14408T C22224T A23403G G25563T C27002Y T27318A G28703T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_468602 MT631794
 2020-04-22 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1658/2020
 AT1- C241T C379A C1059T C3037T C14408T C22224T A23403G G25563T T27318A G28703T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468603 MT631795
 2020-04-22 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C379A C1059T C3037T C14408T G15906T G17058K C22224T A23403G G25563T C29349Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468605 MT631797
 2020-04-22 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1662/2020
 ATTAAAGG1- C241T C379A C1059T T2230Y C3037T C14408T C22224T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468720 MT620769
 2020-04-22 2020-06-15
 United States SARS-CoV-2/human/USA/UF-17/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T A7981G C9967T C14408T A23403G G25563T

EPI_ISL_468723 MT620772
 2020-04-22 2020-06-15
 United States SARS-CoV-2/human/USA/UF-16/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T A7981G C9967T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_469535
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-126EBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G10096A G11222K C14408T A23403G G25563T G26172T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469579
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1273AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C5806T C11195T C14408T C18647T G23401T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469584
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-126FE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C14408T A23403G G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469586
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C5806T C11195T C14408T G23401T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469651
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-126FCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C14408T C22000T A23403G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469663
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469679
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T A23403G C25528T C27143T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469692
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1273BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A G4109T C5806T C11195T C14408T G23401T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469696
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12749D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T G15672T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469726
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-126FD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2749T C3037T T10992C C14408T A23403G A27675C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469739
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-126FF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G10096A C14408T A23403G G25563T G26172T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469743
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1274CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6617A C8299T C9724T C14408T C19185T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469750
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8318T C14408T A23403G T24583C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469758
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12755E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C9438T C14408T G16647T C22264T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469765
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1274D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G443T C3037T C3096T A3675C C14408T C17977T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469779
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C5806T C11195T C14408T G23401T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469792
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12754F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4231T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469878
 2020-04-22 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-FF2D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C19366T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470551 MT711872
 2020-04-22 2020-06-18
 United States SARS-CoV-2/human/USA/UT-02435/2020
 ATT1- C241T C3037T C5184T C14408T C22033T A23403G C26256T C29668T

EPI_ISL_471200
 2020-04-22 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G21255C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471790
 2020-04-22 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20769/2020
 C241T C1059T C3037T C12809T C14408T A14873R A23403G G25563T C26625T G28851T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_471792
 2020-04-22 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20771/2020
 C241T C1059T C3037T G7846K A9859R G11083T T11209Y C14408T C17125T A23403G G25563T

EPI_ISL_471793
 2020-04-22 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20772/2020
 C241T C3037T C14408T C21621Y A23403G C25665Y G28325T AAAAAAAA29896-

EPI_ISL_471797
 2020-04-22 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20776/2020
 C241T C3037T C14408T C17474T C18877T C21772T A23403G G25563T

EPI_ISL_471808
 2020-04-22 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20787/2020
 C241T C1059T C3037T C10078A C14408T C23248T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471931
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/England/EXET-136EBB/2020
 C241T C3037T C14408T A15990G A23403G C25350T

EPI_ISL_471933
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/England/EXET-136ED9/2020
 C241T G2164A C3037T C8733T C14408T A23403G GGG28881AAC

EPI_ISL_471946
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/England/EXET-13705A/2020
 C241T C2669T C3037T C14408T A23403G C25350T

EPI_ISL_471993
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F640/2020
 C241T T1623C C3037T C4577T C14408T A20289G A23403G G24812T T24814C C27046T GGG28881AAC

EPI_ISL_471994
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F65F/2020
 C241T C3037T T5293G A5391G A7755G C14408T A23403G GGG28881AAC

EPI_ISL_471995
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F66E/2020
 C241T T1623C C3037T C4577T C14408T A20289G A23403G G24193T G24812T T24814C C27046T GGG28881AAC

EPI_ISL_471998
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F69B/2020
 C241T T1623C C3037T C4577T C14408T A20289G A23403G G24812T T24814C C27046T GGG28881AAC

EPI_ISL_471999
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F6AA/2020
 C241T T1623C C3037T C4577T C14408T A20289G A23403G G24812T T24814C C27046T GGG28881AAC

EPI_ISL_472006
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F710/2020
 C241T C3037T C14408T C15656T A23403G GGG28881AAC

EPI_ISL_472016
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F7B6/2020
 C241T C3037T C14408T C15656T A23403G GGG28881AAC

EPI_ISL_472967
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1606ED/2020
 C241T C3037T C6026T G11801A C14408T T19839C A23403G G25552T AG28877TC GGG28881AAC

EPI_ISL_473605
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3689A T11660A C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473606
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2865/2020
 C241T C3037T G8131T G9783T G11083T G12070T C14408T T17126C A20268G G22335T A23403G A27578T G29688T

EPI_ISL_473609
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2868/2020
 C241T C3037T C14408T C16338T A23403G C27046T GGG28881AAC G29778A

EPI_ISL_473610
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2872/2020
 C241T C1884T C3037T C6730T C14408T A23403G T26497C G28001T

EPI_ISL_473630
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2917/2020
 ATG1605- C12710T C26447T C28854T

EPI_ISL_473631
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2918/2020
 C241T C2399T C3037T C10335T A11430G C14408T G19117T A23403G G25429A A27232G GGG28881AAC C28940T

EPI_ISL_473633
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2959/2020
 ATG1605- C12710T T21644C C26447T C28854T C28948T

EPI_ISL_473635
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2961/2020
 C241T C3037T G7936T C14408T G21268T G22708T C22879A A23403G

EPI_ISL_473966
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1635A1/2020
 AT1- C241T C3037T C9438T C14408T A23403G GGG28881AAC

EPI_ISL_474124
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1589R C3037T G12031A C14408T C16616T A23403G G25429T G29474T AAAAA29899-

EPI_ISL_474137
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16418E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T G1589R T1705A C3037T C14408T A23403G G25429T G29474T

EPI_ISL_474150
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16426D/2020
 A1- C241T C3037T G11083T C14408T A23403G A25575C

EPI_ISL_475127
 2020-04-22 2020-06-23
 Sweden hCoV-19/Sweden/20-51057/2020
 C241T C3037T C5979T C14195A C14408T A23403G

EPI_ISL_475335
 2020-04-22 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D118B/2020
 C241T C3037T C14408T T19839C A23403G C26681T GGG28881AAC

EPI_ISL_475940
 2020-04-22 2020-06-25
 Singapore hCoV-19/Singapore/409/2020
 G2035T C6310A C6312A G11083T C13730T C17745A C19524T G21255T C23929T C25513T G27798T C28311T C28758T AAAAAAAAAAAA29892-

EPI_ISL_476068
 2020-04-22 2020-06-25
 Hungary hCoV-19/Hungary/UD-10261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G G27754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476123 LR824524 LR861074
 2020-04-22 2020-06-25
 Switzerland 140077
 G102R C241T T1702Y G1730R G2060S G2686K T2737Y C3037T T3981Y T4375Y T4708K T6141W T7274K A7451G T11918Y C11962Y A12393W A12405W A12841W C13458Y A13622R C13684M A13866W C14408T T15522W A15820R G19750R C20290Y G21608K A21626R C21654S A22474M A23403G A23975M T24354W A25360R C27034Y A28715W G28985R G29744R C29837M A29844W A29865W

EPI_ISL_476124 LR824531 LR861090
 2020-04-22 2020-06-25
 Switzerland 140079
 C241T C3037T C11518Y G12988T C14408T C15324T A19298W T19363Y A22505M A23403G T23489C C28831T

EPI_ISL_476496
 2020-04-22 2020-06-25
 Argentina hCoV-19/Argentina/Heritas_HG001/2020
 C241T C3037T C3966T A10874G C14408T A23403G G26416T T27299C GGG28881AAC T29148C C29451T

EPI_ISL_477009
 2020-04-22 2020-06-27
 Hungary hCoV-19/Hungary/UD-10333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC C29445T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477013
 2020-04-22 2020-06-27
 Hungary hCoV-19/Hungary/UD-9953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14786T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477631 MT679155
 2020-04-22 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C1917T C3037T C14408T A23403G G25563T C29836T G29868A C29870A

EPI_ISL_478045
 2020-04-22 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3689A T11660A C14408T C15738T A23403G G25429T A28841G A29600G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478048
 2020-04-22 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21304A A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478049
 2020-04-22 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478051
 2020-04-22 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C12138T C15579T C17470T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478277
 2020-04-22 2020-06-30
 United Kingdom hCoV-19/England/EXET-135960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10188T C14408T A23403G C25350T T28199- T28924A

EPI_ISL_478939
 2020-04-22 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0B86/2020
 C241T C313T C3037T C3552T G4109A C8090T C14408T A23403G G25456T GGG28881AAC

EPI_ISL_478957
 2020-04-22 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0D08/2020
 C241T C3037T C9474T C14408T C19488T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_478972
 2020-04-22 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0E8D/2020
 C241T C1059T C3037T C6627T A11740T C14408T A23403G C24023T G25563T G29291A AAAAAAA29897-

EPI_ISL_479001
 2020-04-22 2020-06-30
 United Kingdom hCoV-19/England/OXON-B12CC/2020
 ATTAAAGGTTT1- C241T C3037T C4999T C5183T C14408T A20268G A23403G C26571T G28109T C28854T G28968T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_479014
 2020-04-22 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1420/2020
 A1- C241T C3037T C14408T G21624T A23403G C24378T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_479020
 2020-04-22 2020-06-30
 United Kingdom hCoV-19/England/OXON-B14C6/2020
 C241T A1630C C3037T C14408T C19011T A23403G C27679T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_479022
 2020-04-22 2020-06-30
 United Kingdom hCoV-19/England/OXON-B14E4/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC

EPI_ISL_479116
 2020-04-22 2020-06-30
 United Kingdom hCoV-19/England/OXON-B210A/2020
 C241T C1059T C3037T C6627T A11740T C14408T A23403G C24023T G25563T G29291A AAAAAAA29897-

EPI_ISL_479146
 2020-04-22 2020-06-30
 United Kingdom hCoV-19/England/OXON-B246B/2020
 C241T C3037T C7043T C11747T T13656C C14408T A23403G C26873T GGG28881AAC AAAAAAA29897-

EPI_ISL_479258
 2020-04-22 2020-06-30
 United Kingdom hCoV-19/England/SHEF-CD649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C8090T C10789T A12796C G21753T C28609T C28657T G28857A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480235
 2020-04-22 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV054/2020
 C241T AAGTCATTT686- C3037T C7765T C14408T C17690T C18877T A23403G G25563T G27666T

EPI_ISL_480236
 2020-04-22 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV055/2020
 C241T C3037T G6865A T7386C C12809T C14408T A23403G GGG28881AAC

EPI_ISL_480238
 2020-04-22 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV062/2020
 C241T C3037T C7006T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_480239
 2020-04-22 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV063/2020
 C241T G881A C3037T C14408T C18877T G20668A C22444T A23403G G25563T C26735T C27476T C28854T

EPI_ISL_480304
 2020-04-22 2020-07-01
 Bulgaria hCoV-19/Bulgaria/24/2020
 C203T C241T C673T C3037T A6716G A10770G C14408T T17922C C23191T A23403G A28381C GGG28881AAC C29762T

EPI_ISL_480875 MT704042
 2020-04-22 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0224/2020
 AT1- C241T C3037T C8389T C14408T A23403G T25237A G25563T G27915A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_480876 MT704043
 2020-04-22 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0225/2020
 ATT1- T148A C241T C1059T C3037T T5185C C5884T C13487T C14408T G15543T C18888T C22858T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480877 MT704044
 2020-04-22 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0226/2020
 ATTA1- T148A C241T C1059T C3037T T5185C C5884T C13487T C14408T G15543T C18888T C22858T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_480878 MT704045
 2020-04-22 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0227/2020
 A1- C482T T490A C3177T C8782T T18144C T18736C C21575T G22021T C24034T C24130T T26729C C27998T G28077C T28144C C29095T AG29700GA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_480879 MT704046
 2020-04-22 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0228/2020
 A1- C241T C1059T C3037T C10319T C14408T C19170T G20995T A23403G G25126A G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481614
 2020-04-22 2020-07-03
 Finland hCoV-19/Finland/22A33S5/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481615
 2020-04-22 2020-07-03
 Finland hCoV-19/Finland/22A44S5/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481616
 2020-04-22 2020-07-03
 Finland hCoV-19/Finland/22A45S8/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481617
 2020-04-22 2020-07-03
 Finland hCoV-19/Finland/22A98S8/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481982
 2020-04-22 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12E34E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- TGGTCATGTTATG508- A2480G C2558T C9724T G11083T C14805T A16474G C18457T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482025
 2020-04-22 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12E302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G10096A C14408T G18040T A23403G G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482027
 2020-04-22 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12E36C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G10096A C14408T A23403G G23755T G24199T G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482368
 2020-04-22 2020-07-03
 United States hCoV-19/USA/OR-PROV-097/2020
 C241T C3037T C9430T T10158C C14408T G19969A A20268G A23403G C28854T

EPI_ISL_482370
 2020-04-22 2020-07-03
 United States hCoV-19/USA/OR-PROV-100/2020
 C241T C3037T C14408T A20268G A23403G C29370G

EPI_ISL_482371
 2020-04-22 2020-07-03
 United States hCoV-19/USA/OR-PROV-101/2020
 C241T C280T C3037T C11563T C14408T C18877T A23403G G24550A G25563T

EPI_ISL_483262
 2020-04-22 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0621-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T

EPI_ISL_483273
 2020-04-22 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0638-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T

EPI_ISL_483453
 2020-04-22 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0999-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C920T C3037T C14408T G15760T A20268G A23403G C28854T

EPI_ISL_483454
 2020-04-22 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1000-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C7768T C11575T C14408T G19525T A20268G A23403G C28854T

EPI_ISL_483472
 2020-04-22 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1028-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T

EPI_ISL_484369
 2020-04-22 2020-07-08
 United Kingdom hCoV-19/England/NOTT-112301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7936T C14408T T20840C A23403G G25186T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484652
 2020-04-22 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR2908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T C26447T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485080
 2020-04-22 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26513029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T G28899A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485105
 2020-04-22 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26544513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485230
 2020-04-22 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26629234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T G28899A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486014
 2020-04-22 2020-07-10
 United States hCoV-19/USA/WA-UW-2679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T T8883C TT8885AA C14408T A23403G G25563T G29553A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_486015
 2020-04-22 2020-07-10
 United States hCoV-19/USA/WA-UW-2686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36Y C222T C4456T A6693G T8601C C8782T C14877T C17747T A17858G C18060T T27228A TTG27775CGA T28144C A29188T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486019
 2020-04-22 2020-07-10
 United States hCoV-19/USA/WA-UW-2729/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C6990T C8407T G11083T C12880T C14408T A23403G G25563T G27877T G29553A AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_486022
 2020-04-22 2020-07-10
 United States hCoV-19/USA/WA-UW-2735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_486023
 2020-04-22 2020-07-10
 United States hCoV-19/USA/WA-UW-2736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T A9993G A10181C G11083T C14408T C16859T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_486024
 2020-04-22 2020-07-10
 United States hCoV-19/USA/WA-UW-2737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C1059T C3037T C12738T C14408T G16912T T18863C A23403G G25494T G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486134
 2020-04-22 2020-07-10
 United States hCoV-19/USA/CA-CZB-1817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T AAGTCATTT686- C3037T A3715C C6395Y C6664T G11083K C12513T C14408T A18139G A20268G A23403G C25571Y T25902W T25908W G25913S C28854T

EPI_ISL_486198 MT750397
 2020-04-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1899/2020
 ATTAAAGGTT1- C241T C3037T T4711C A6709G C14408T A23403G GGG28881AAC C29077Y

EPI_ISL_486202 MT750401
 2020-04-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C2062T G2632T C3037T T4711C C6449T A6709G C14408T A14771G C18570T A22904M A23122R A23403G T25902W T25908W G25913S GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486204 MT750402
 2020-04-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1911/2020
 A1- C241T C3037T T4711C A6709G C14408T C17125T A23122R A23403G C23638T GGG28881AAC T29867H

EPI_ISL_486206
 2020-04-22 2020-07-10
 United States hCoV-19/USA/CA-CZB-1913/2020
 ATTAAAGG1- C241T C2062T C3037T G3582T T4711C A6709G C13335Y C14408T A14771G C18570T A22904M A23122R A23403G T25902W T25908W G25913S GGG28881AAC

EPI_ISL_486208 MT750404
 2020-04-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1915/2020
 ATT1- C241T C320S C3037T T4711C G5271K A6709G C8240Y C14408T C18570T C19421Y A23122R A23403G T25902W T25908W G25913S GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486210
 2020-04-22 2020-07-10
 United States hCoV-19/USA/CA-CZB-1918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23122R A23403G T25902W T25908W G25913S C26522Y

EPI_ISL_486211
 2020-04-22 2020-07-10
 United States hCoV-19/USA/CA-CZB-1919/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A30R C241T C3037T C14408T G18898T A23122R A23403G T25902W T25908W G25913S C28093T GGG28881AAC

EPI_ISL_486295 MT750464
 2020-04-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2051/2020
 AT1- C241T C3037T C8327T C14408T C20402Y A23122R A23403G C24442T A24862G G25429T

EPI_ISL_486296 MT750465
 2020-04-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2052/2020
 C241T C3037T C8327T C14408T A23122R A23403G A24862G T29867H

EPI_ISL_486297 MT750466
 2020-04-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8327T C14408T A22904H A23122V A23403G A24862G G25177K A28081R

EPI_ISL_486298
 2020-04-22 2020-07-10
 United States hCoV-19/USA/CA-CZB-2054/2020
 ATTA1- A30R C241T G419K C3037T A6616R C8327T C14408T G15598K A23122R A23403G C24442T A24862G

EPI_ISL_486299 MT750467
 2020-04-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2056/2020
 ATTA1- C241T C3037T C8327T C14408T A23403G A24862G

EPI_ISL_486300 MT750468
 2020-04-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2057/2020
 ATTAA1- C241T G2659K C3037T C8327T C14408T A23122R A23403G A24862G T25902W T25908W G25913S T26102C C29545T T29867M

EPI_ISL_486301 MT750469
 2020-04-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2058/2020
 ATT1- C241T C3037T C8327T C14408T A23403G C24442T A24862G

EPI_ISL_486302 MT750470
 2020-04-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2059/2020
 AT1- C241T C3037T C8327T C14408T A23403G A24862G C29870M

EPI_ISL_486303
 2020-04-22 2020-07-10
 United States hCoV-19/USA/CA-CZB-2060/2020
 ATTA1- C241T C3037T C8327T C14408T A23122R A23403G A24862G C25427Y

EPI_ISL_486304
 2020-04-22 2020-07-10
 United States hCoV-19/USA/CA-CZB-2061/2020
 C241T C3037T C8327T C14408T A23122R A23403G C24442T A24862G

EPI_ISL_486305
 2020-04-22 2020-07-10
 United States hCoV-19/USA/CA-CZB-2062/2020
 ATTAAAGGTTT1- C241T C3037T A6616R C8327T T13030Y C14408T A23122V A23403G C24442T A24862G T25902W T25908W G25913S

EPI_ISL_486306
 2020-04-22 2020-07-10
 United States hCoV-19/USA/CA-CZB-2063/2020
 ATTA1- C241T C3037T C8327T C9112T C14408T C20313M A23122R A23403G C24442T A24862G G25429T

EPI_ISL_486866
 2020-04-22 2020-07-12
 Senegal hCoV-19/Senegal/9250/2020
 ATTAAAGGTTTATACCT1- C241T C313T C1142T C3037T G8017T C14408T G15451A G16979T C19572T C23248T A23403G G24445A GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_487525
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D6513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29363T T29568C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487529
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D64F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C573Y C1059T A1904G C3037T C14408T C22088T A23403G G24368T G25563T C27769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487540
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D6452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T A5827G G11842T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487550
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D6531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2710T T2872C C3037T C3041A C14408T A23403G C26447T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487564
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D6470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T G11083K C13115T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487578
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D656E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27682C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487581
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D64E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A18298G C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487582
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D655F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15277T A23403G GGG28881AAC C29370T C29546T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487585
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D648F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T65W C241T C3037T T9412C C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487595
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D659B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C T23065C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487597
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D64CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24082T GGG28881AAC G28903T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487600
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D649E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T C19862Y C25511T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487607
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D6522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487615
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D64BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T814C C3037T C14408T C19813T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487616
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D6504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T G13627T C14805T C15540T C16329Y T21775C G26144T C26735T A28338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487625
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D6689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5392T T11012C G11083T G13627T C14805T C15540T G26144T A28338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487631
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/LOND-D667A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A19543C G21157A A23403G C25413T C27002Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487749
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB2399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14621Y A23403G G24390T C25433T G29440T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487801
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G T25159C C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487839
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487910
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C6500T C9979T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487932
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C3935G T5165Y A7468G C16362T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_487956
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1234C C3037T C7420T C10798A C13862T C14408T A15779G A23403G C28836T A29443C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488003
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-2985C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488004
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-29851B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4181K A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488007
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-297567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T606C C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488008
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-29760A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A18163G A23403G C26037T G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488013
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-2985EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A5309G C10507T A18673G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488021
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-2976DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T950C C3037T C13059Y C14408T G22103C A23403G C28093Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488030
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-297707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16647K A20268G A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488036
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-297664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G C21707T A23403G C26447T T27422C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488078
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-2985B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6771C G10097A C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488141
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-297A0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488151
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-297AD1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C3037T C10448T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488191
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12ED22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18520K C22450T A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488203
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EED4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1572T C3037T G10097A C10369T C14408T C16111T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488245
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EF77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A27660G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488246
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E7CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTCATGTTA510- C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488247
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E87C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C21846T C26542T G27516T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488248
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EF86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C14408T C15352T C22000T A23403G G26262T C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488252
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12ED13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488257
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12ED31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24418T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488264
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G10096A C14408T G18040T A23403G G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488285
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EE5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488292
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12ECF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T G23873K C25511T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488299
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EC8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174T C853T A2480G C2558T C2706T A7025G C7390T C9724T G11083T C14805T G26144T C28399T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488338
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EE89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14724T A21958G A23403G C29363T G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488353
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EE01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A17892G A23403G GGG28881AAC C29754T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488376
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7600T C14408T A23403G G24410A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488402
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10764T C14408T A23403G GGG28881AAC A29403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488405
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EE7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T C14408T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488426
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EC9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174T C853T C1471Y A2480G C2558T C2706T A7025G C7390T C9724T G11083T C14805T G26144T C28399T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488429
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E94C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C678T C3037T C14408T G18859T G21624T A23403G G26840T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489434
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/CAMB-1ACC01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C14408T A23403G TTTAAAGTTTCCATTTGGAATC27265- G28514T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489503
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/CAMB-1AC524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A4228G C14408T C20544T A23403G T25356C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489527
 2020-04-22 2020-07-14
 United Kingdom hCoV-19/England/CAMB-1AC481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C10632T C14408T A23403G G26589C C27128T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489875 EPI_ISL_491071
 2020-04-22 2020-07-14
 Romania hCoV-19/Romania/ROSV_3960/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3225A C14408T A20268G A20753G A23403G A23734G C27707T C28833T C29218T GAATGTCGCGCATTGGCATGGAAGTCACAC29220- C29250T TC29252CG A29827T TGCT29829- CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_489876 EPI_ISL_491072
 2020-04-22 2020-07-14
 Romania hCoV-19/Romania/ROSV_3962/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G A29827T G29830T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_491143
 2020-04-22 2020-07-16
 Oman hCoV-19/Oman/C-3240/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T G17302T C17740T A23403G C24370T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860T

EPI_ISL_491162
 2020-04-22 2020-07-16
 Oman hCoV-19/Oman/C-2673/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C13694T C14408T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_491163
 2020-04-22 2020-07-16
 Oman hCoV-19/Oman/C-2826/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C13694T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_491171
 2020-04-22 2020-07-16
 Oman hCoV-19/Oman/C-3067/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T ATG3546- C4246T G10265A C14408T C16293T C17678T G19645T A23403G T23482C GGG28881AAC A29850T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_491432
 2020-04-22 2020-07-16
 Peru hCoV-19/Peru/INS-028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T G4657T C5907T C14408T C15277T C18029T A21917G A23403G C25872T A26530G C26753Y ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491567
 2020-04-22 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C7011T C14408T G18803T A23403G A25798G T26715K G26720R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491570
 2020-04-22 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2780T C3037T C14408T A20268G A23403G T26715K G26720R C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491577
 2020-04-22 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5192A C5869T T13717A C14408T C15540T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491603
 2020-04-22 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T26715K G26720R C28854T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491609
 2020-04-22 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15237T A23403G G26398T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491613
 2020-04-22 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T26715K G26720R C28854T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491621
 2020-04-22 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8032R C14408T C18788T T19839C A23403G A24862G T26715K G26720R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491665
 2020-04-22 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T26715K C27371T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491679
 2020-04-22 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T A11772G C14805T T17247C C23103T C25714T G26144T T26715K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491945
 2020-04-22 2020-07-17
 Ecuador hCoV-19/Ecuador/23055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_492839
 2020-04-22 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C1000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C6151T G11083T C14805T C16163T C18508T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493096 MT782369
 2020-04-22 2020-07-20
 United States SARS-CoV-2/human/USA/UT-02455/2020
 ATTAAAGGT1- C241T C1059T C3037T C10851T C14408T A23403G G25563T A29903-

EPI_ISL_493412
 2020-04-22 2020-07-21
 Singapore hCoV-19/Singapore/652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- A253R C6310A C6312A C11074T G11083T C13730T C19524T A21563W T21698Y A22294R C23185T C23929T C28311T G29737C CGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29743-

EPI_ISL_493478
 2020-04-22 2020-07-21
 United Kingdom hCoV-19/England/NORT-298ED4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G23593T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493480
 2020-04-22 2020-07-21
 United Kingdom hCoV-19/England/NORT-299019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2902T C3037T GTTTGTCTG11283- C14408T A23403G A24385G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493481
 2020-04-22 2020-07-21
 United Kingdom hCoV-19/England/NORT-299170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15906T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493570
 2020-04-22 2020-07-21
 United Kingdom hCoV-19/England/NOTT-1129B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10719A A11101G C14408T G18859T G21624T G22104C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493571
 2020-04-22 2020-07-21
 United Kingdom hCoV-19/England/NOTT-1129C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C12116T C14805T A16687G T17247C G20352A C21859T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493572
 2020-04-22 2020-07-21
 United Kingdom hCoV-19/England/NOTT-1129E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2040T C2416T C3037T C4683T C9693T C12559T C14408T C14786T G20305T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494676
 2020-04-22 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1887T C3037T C3775T C14408T A23403G G25563T T25842C

EPI_ISL_494683
 2020-04-22 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T G17972T A20268G A23403G C28854T

EPI_ISL_494695
 2020-04-22 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1625/2020
 ATTAAA1- C241T C1059T C3037T C9430T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_494710
 2020-04-22 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C1059T C1437T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_496359
 2020-04-22 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G C22208T A23403G C28854T

EPI_ISL_496360
 2020-04-22 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1699/2020
 ATTA1- C241T A1096G C3037T C14408T G14874T C18877T A23403G G25563T

EPI_ISL_496361
 2020-04-22 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1700/2020
 AT1- C241T C3037T C9438T C14408T A20268G C21772T A23403G C28854T

EPI_ISL_496362
 2020-04-22 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1701/2020
 ATTAAAGGTTTAT1- C241T C1288T C3037T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_496363
 2020-04-22 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1702/2020
 ATTAAAGGTTTA1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_496365
 2020-04-22 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1704/2020
 ATTA1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_496366
 2020-04-22 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T G29715T

EPI_ISL_496367
 2020-04-22 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1706/2020
 ATTAAAGG1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_496527
 2020-04-22 2020-07-24
 India hCoV-19/India/BJMC_2086/2020
 ATT1- C28- C241T C313T C3037T C5700A T8866A C14408T A21137G A23403G GGG28881AAC CCACGCGGAGT29738-

EPI_ISL_496550
 2020-04-22 2020-07-24
 India hCoV-19/India/BJMC_2192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C313T C3037T C5700A T7744C C14408T G21123T A23403G GGG28881AAC

EPI_ISL_499784
 2020-04-22 2020-07-28
 United Kingdom hCoV-19/England/NORT-296F5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3294T C14408T C15615T A20268G A23403G C28854T G29737A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499785
 2020-04-22 2020-07-28
 United Kingdom hCoV-19/England/NORT-297127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T A11600G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499788
 2020-04-22 2020-07-28
 United Kingdom hCoV-19/England/NORT-29C7E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T868C C3037T C4246T C14408T A20268G C21707T A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507946
 2020-04-22 2020-08-03
 United States hCoV-19/USA/MN-MDH-1357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G5017T C8782T G14350T A17858G C18060T A24694T T28144C G28812T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_507947
 2020-04-22 2020-08-03
 United States hCoV-19/USA/MN-MDH-1358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G5017T C8782T G14350T A17858G C18060T A24694T T28144C C28310A G28812T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_507948
 2020-04-22 2020-08-03
 United States hCoV-19/USA/MN-MDH-1359/2020
 ATTA1- G5017T C8782T G14350T C17747T A17858G C18060T A24694T T28144C C28310A G28812T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_507949
 2020-04-22 2020-08-03
 United States hCoV-19/USA/MN-MDH-1360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G5017T C8782T G14350T A17858G C18060T A24694T T28144C G28812T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_507950
 2020-04-22 2020-08-03
 United States hCoV-19/USA/MN-MDH-1361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G5017T C8782T C11461T G14350T C16887T A17858G C18060T A24694T T28144C G28812T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_507951
 2020-04-22 2020-08-03
 United States hCoV-19/USA/MN-MDH-1362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G5017T C8782T G14350T C17747T A17858G C18060T A24694T T28144C G28812T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_507952
 2020-04-22 2020-08-03
 United States hCoV-19/USA/MN-MDH-1363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G5017T C8782T G14350T C17747T A17858G C18060T A24694T T28144C G28812T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509059
 2020-04-22 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20980A A23403G AAA29901-

EPI_ISL_512221
 2020-04-22 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1815G C3037T C14408T C18995T A20268G A23403G C28854T

EPI_ISL_512222
 2020-04-22 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T G16741A A20268G T23030C A23403G C28854T

EPI_ISL_512223
 2020-04-22 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_512224
 2020-04-22 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C539T C1059T C3037T A3951G C10635T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_512229
 2020-04-22 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C12484T C14408T C14818T C16762T A23403G G25563T

EPI_ISL_512230
 2020-04-22 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T C3037T C14408T G16414T A20268G A23403G C28854T

EPI_ISL_512273
 2020-04-22 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G12749A C14408T A20268G A23403G C26078T C28854T

EPI_ISL_512415
 2020-04-22 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D3E0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2142T C3037T C14408T C19170T G19509A A23403G T28382C GGG28881AAC C28905T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512416
 2020-04-22 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D3E37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512417
 2020-04-22 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D3E82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2881T C3037T C4788T C14408T G19162T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512844
 2020-04-22 2020-08-12
 Myanmar hCoV-19/Myanmar/MMC_137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A T7730C G11083T C13730T C17502T A21792T C23929T C28311T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_512963
 2020-04-22 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH566/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_514074
 2020-04-22 2020-08-14
 United States hCoV-19/USA/UN-CDC-7480/2020
 C241T C3037T C14178T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514075
 2020-04-22 2020-08-14
 United States hCoV-19/USA/UN-CDC-7481/2020
 C241T T2882Y C3037T A7929G G10488K C14408T C14599Y C14755Y G14772K C14786Y G20247K T22099Y TA22189YM G23236K A23403G C26333Y C28115Y GGG28881AAC C28905Y C29411Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514076
 2020-04-22 2020-08-14
 United States hCoV-19/USA/UN-CDC-7488/2020
 C241T C3037T A7929G C10232T C14408T A23403G ACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAGACAG27683- GGG28881AAC T29821A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514077
 2020-04-22 2020-08-14
 United States hCoV-19/USA/UN-CDC-7493/2020
 C241T C3037T C14408T C20719Y A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514078
 2020-04-22 2020-08-14
 United States hCoV-19/USA/UN-CDC-7498/2020
 C241T C3037T A7929G C14408T C20233T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514079
 2020-04-22 2020-08-14
 United States hCoV-19/USA/UN-CDC-7520/2020
 C241T C3037T A7929G C14408T C20233T TT22274WK A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514080
 2020-04-22 2020-08-14
 United States hCoV-19/USA/UN-CDC-7528/2020
 C241T C1191Y C3037T A3361W C4421Y G7677S C11685Y C11950Y C14408T G14575K G14653K T20967K A23403G T23599C A24452W G25606K G26316R C26801Y T27381Y G28361C GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514081
 2020-04-22 2020-08-14
 United States hCoV-19/USA/UN-CDC-7529/2020
 C241T C3037T C5031Y A7929G C14408T A23403G A26009R T27810Y C28473Y GGG28881AAC TA29789YM AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514339
 2020-04-22 2020-08-17
 Peru hCoV-19/Peru/INS-079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T G10265A C14408T A23403G A28877T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_514340
 2020-04-22 2020-08-17
 Peru hCoV-19/Peru/INS-080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGA1- C241T C3037T G10265A C14408T C14790T C20081G A23403G GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_514341
 2020-04-22 2020-08-17
 Peru hCoV-19/Peru/INS-081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C875Y C3037T C8074T G10265A T11689C C14408T A23403G C25678T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_514342
 2020-04-22 2020-08-17
 Peru hCoV-19/Peru/INS-082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACA1- C241T C1913T C3037T G10265A C14408T A23403G G26727T GGG28881AAC AAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGC29712- GC29786CT TGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29793CAC

EPI_ISL_514505
 2020-04-22 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D3DB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2142T C3037T C14408T C19170T G19509A A23403G GGG28881AAC C28905T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514506
 2020-04-22 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D3DC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2142T C3037T C14408T C19170T G19509A A23403G GGG28881AAC C28905T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514508
 2020-04-22 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D3E46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2142T C3037T C14408T T15078C C19170T G19509A A23403G G23608C GGG28881AAC C28905T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514510
 2020-04-22 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D3E64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G A3003T C3037T C5730T C7231T C14408T G19542T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515938
 2020-04-22 2020-08-20
 India hCoV-19/India/nimh-3033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C3634T A3742G C5055T C14408T C15324T G16945A G20709T A23403G C23635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_523170
 2020-04-22 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A647G C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523426
 2020-04-22 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11417T C14408T G15380T A23403G G25563T C28290T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523484
 2020-04-22 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18972T C21855T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523529
 2020-04-22 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G C26313T GGG28881AAC G29628T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523991
 2020-04-22 2020-08-27
 Brazil hCoV-19/Brazil/SP-211/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C10456T C14408T A23403G T27233G T27299C GGG28881AAC T29148C A29863T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865T

EPI_ISL_524050
 2020-04-22 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-8532V/2020
 ATTA1- A30G C241T C3037T C3140T C14408T A23403G C26750T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524051
 2020-04-22 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-8542V/2020
 ATTA1- C241T A2015G C3037T C3140T C14408T A23403G C26750T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524466
 2020-04-22 2020-08-28
 Brazil hCoV-19/Brazil/SP-262/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G4399T G12274T C14408T GT14500AC A23403G G25088T GGG28881AAC C28887T G29711C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_524467
 2020-04-22 2020-08-28
 Brazil hCoV-19/Brazil/SP-263/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1346A C3037T C8293T C14408T A22720G A23403G C24378T T27299C GGG28881AAC T29148C AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_526554 MT956686
 2020-04-22 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1068/2020
 ATT1- C241T TGGTCATGTTATGGT508- AAGTCATTT686- C1059T G2808A C3037T C7609T C14408T C20051T A23403G G25563T A26433G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_526555 MT956687
 2020-04-22 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1069/2020
 AT1- T490A C3177T C8782T T18144C T18736C C21575T C24034T T26729C C27998T G28077C T28144C AG29700GA CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526759
 2020-04-22 2020-09-02
 United Kingdom hCoV-19/England/201780626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2164A G2235K C3037T C6968T G8687K T9703Y C14408T T16242C G20033R G20887K T21628G C21662Y A23403G A23767T G28703T GGG28881AAC

EPI_ISL_527423
 2020-04-22 2020-09-02
 United States hCoV-19/USA/CO-CSU-D0769-3/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527424
 2020-04-22 2020-09-02
 United States hCoV-19/USA/CO-CSU-D0789-1/2020
 C241T C1059T C3037T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527430
 2020-04-22 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1057-3/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T T26307Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527448
 2020-04-22 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1696/2020
 C241T C1059T C3037T G8602A C8841T C14408T A23403G T25058G T25468G G25563T T26307C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527464
 2020-04-22 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2373-2/2020
 C241T C1059T C3037T G8602A C12525T C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527471
 2020-04-22 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2598-2/2020
 C241T C1059T C3037T G8602A C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527481
 2020-04-22 2020-09-02
 United States hCoV-19/USA/CO-CSU-E0468/2020
 C241T C1059T C3037T C14408T G20616T A23403G A24129G G25552T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527482
 2020-04-22 2020-09-02
 United States hCoV-19/USA/CO-CSU-E0491/2020
 C241T C1059T C3037T C14408T G20616T A23403G A24129G G25552T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527485
 2020-04-22 2020-09-02
 United States hCoV-19/USA/CO-CSU-E0983-3/2020
 C241T C1059T C3037T C8841T G10793T T10800Y C14408T G14548K G18105R G19414T G20616T A23403G A24129G T24235K C24270Y G24284R AT24287MW A24298R A24302M T24307K T25058G G25563T A26137M CC26150MM GT26155KW G26158K T26307C T27328W A27398R AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527486
 2020-04-22 2020-09-02
 United States hCoV-19/USA/CO-CSU-E1302/2020
 C241T C1059T C3037T C14408T G20616T A23403G A24129G G25552T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527488
 2020-04-22 2020-09-02
 United States hCoV-19/USA/CO-CSU-E2959/2020
 C241T C1059T C3037T C14408T G20616T A23403G A24129G G25552T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527670
 2020-04-22 2020-09-04
 United States hCoV-19/USA/MN-CDC-6195/2020
 C241T C1059T C3037T C5512T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527723
 2020-04-22 2020-09-04
 United States hCoV-19/USA/MN-CDC-6536/2020
 C241T C3037T C14408T C16830T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527865
 2020-04-22 2020-09-05
 Brazil hCoV-19/Brazil/SP-218/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C12053T C14408T C16733T A23403G G25088T C28677T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_527867
 2020-04-22 2020-09-05
 Brazil hCoV-19/Brazil/SP-225/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C G29861T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_527869
 2020-04-22 2020-09-05
 Brazil hCoV-19/Brazil/SP-300/2020
 ATTAAAGGTTTATACCTTCCCAG1- GT24CG C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_529965
 2020-04-22 2020-09-10
 Indonesia hCoV-19/Indonesia/JI-ITD-4859V/2020
 ATTA1- C241T C3037T A4429G C14120T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_530074
 2020-04-22 2020-09-10
 Spain hCoV-19/Spain/MD-LP77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534823
 2020-04-22 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2EC7/2020
 C241T C3037T C13264T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_534847
 2020-04-22 2020-09-14
 United Kingdom hCoV-19/England/OXON-B329D/2020
 ATTAAAGGTTTATACCTTC1- G174A C241T C2416T C3037T C8352T C12374T C14408T C14786T G20578T A23403G G25563T C28435T AA29871TC AAAAAAAAAAAAAA29890-

EPI_ISL_534848
 2020-04-22 2020-09-14
 United Kingdom hCoV-19/England/OXON-B32BB/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G C28754T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_534922
 2020-04-22 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3FE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- A29M T49K GA56KW C241T C3037T C14408T T19839C A23403G G25906T C26681T GGG28881AAC T29417C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_538808
 2020-04-22 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9A27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13459T C14408T T20361C A23403G GGG28881AAC G29692K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539798
 2020-04-22 2020-09-20
 United States hCoV-19/USA/WY-WYPHL-20009973/2020
 AT1- C241T C1059T C3037T A7870G C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_541397
 2020-04-22 2020-09-22
 Brazil hCoV-19/env/Brazil/RJ-4712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T A3240G A10920M G11528A T12483Y A12485R C14408T G22583A A23403G T27299C GGG28881AAC T29148C GAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29715-

EPI_ISL_541763
 2020-04-22 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286D9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G G28851T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542533
 2020-04-22 2020-09-23
 United States hCoV-19/USA/TX-HMH-1104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542568
 2020-04-22 2020-09-23
 United States hCoV-19/USA/TX-HMH-1179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542577
 2020-04-22 2020-09-23
 United States hCoV-19/USA/TX-HMH-1189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T G4631A C6310T C14408T G18898T A23403G A25315G C25413T G26122A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542657
 2020-04-22 2020-09-23
 United States hCoV-19/USA/TX-HMH-1337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5728C C14408T A15979G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547506
 2020-04-22 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14262T C14408T A23403G C27046T GGG28881AAC T29128C G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547507
 2020-04-22 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A22105T A23403G C27046T GGG28881AAC T29128C G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547508
 2020-04-22 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6977A C7006T T11638C C14408T A23403G GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547522
 2020-04-22 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3040T C14408T T17454C A20268G A23403G C26912T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547538
 2020-04-22 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3988G T11638C C12412T C14408T A23403G G24872T GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560584
 2020-04-22 2020-09-29
 France hCoV-19/France/GE8512/2020
 ATTAAAGGTTTATACCTTC1- C36T C241T C3037T C14408T C15324T C21635A A23403G G23426T C28887T C29754T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_568688
 2020-04-22 2020-10-02
 Indonesia hCoV-19/Indonesia/JK-EIJK-32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C186T T10553C C14636T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568952
 2020-04-22 2020-10-02
 France hCoV-19/France/IHU-0733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T C6286A G8371T C9996T C14408T C15933T A23403G G25563T C28076T G29747T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568953
 2020-04-22 2020-10-02
 France hCoV-19/France/IHU-0736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G T25502C G25563T G25996C G26774A C28892T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT628061
 2020-04-22 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S665/2020
 ATTAAAGGTTTAT1- G1401A C7047T C8782T C17747T A17858G C18060T A19308G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628066
 2020-04-22 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S666/2020
 ATTAAAGGTTTA1- G1401A C8782T A16305G C17747T A17858G C18060T A19308G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628069
 2020-04-22 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S668/2020
 ATTAAAGGTTTAT1- G1401A C8782T C17747T A17844G A17858G C18060T A19308G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT628076
 2020-04-22 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S664/2020
 ATTAAAGGTTTAT1- C8782T G15406A C17010T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT810772
 2020-04-22 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1698-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G C22208T A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810773
 2020-04-22 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1699-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1096G C3037T C14408T G14874T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810774
 2020-04-22 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1700-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C9438T C14408T A20268G C21772T A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810775
 2020-04-22 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1701-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810776
 2020-04-22 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1702-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810778
 2020-04-22 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1704-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810779
 2020-04-22 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1705-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810780
 2020-04-22 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1706-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810877
 2020-04-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1588-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C3775T C14408T A23403G G25563T T25842C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810884
 2020-04-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1597-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T G17972T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810896
 2020-04-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1625-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C9430T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810911
 2020-04-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1645-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1437T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811275
 2020-04-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0621-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811286
 2020-04-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0638-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811405
 2020-04-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0840-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C2142T C3037T T5550G A12229G C14408T A22023T A23403G C25350T G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811460
 2020-04-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0999-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C920T C3037T C14408T G15760T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811461
 2020-04-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1000-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T C11575T C14408T G19525T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811479
 2020-04-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1028-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT880880
 2020-04-22 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7480/2020
 C241T C3037T C14178T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT880881
 2020-04-22 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7493/2020
 C241T C3037T C14408T C20719Y A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT880882
 2020-04-22 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7498/2020
 C241T C3037T A7929G C14408T C20233T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT880883
 2020-04-22 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7520/2020
 C241T C3037T A7929G C14408T C20233T TT22274WK A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT882315
 2020-04-22 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7481/2020
 C241T T2882Y C3037T A7929G G10488K C14408T C14599Y C14755Y G14772K C14786Y G20247K T22099Y TA22189YM G23236K A23403G C26333Y C28115Y GGG28881AAC C28905Y C29411Y AAAAAAAAAAAAAAAAAAAAA29883-

MT882316
 2020-04-22 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7488/2020
 C241T C3037T A7929G C10232T C14408T A23403G ACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAGACAG27683- GGG28881AAC T29821A AAAAAAAAAAAAAAAAAAAAA29883-

MT882317
 2020-04-22 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7528/2020
 C241T C1191Y C3037T A3361W C4421Y G7677S C11685Y C11950Y C14408T G14575K G14653K T20967K A23403G T23599C A24452W G25606K G26316R C26801Y T27381Y G28361C GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT882318
 2020-04-22 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7529/2020
 C241T C3037T C5031Y A7929G C14408T A23403G A26009R T27810Y C28473Y GGG28881AAC TA29789YM AAAAAAAAAAAAAAAAAAAAA29883-

MT921165
 2020-04-22 2020-08-25
 United States SARS-CoV-2/human/USA/UF-23/2020
 ATTAAAGGTT1- C241T C1059T C3037T A7981G C9967T C14408T A23403G G25563T

MT921166
 2020-04-22 2020-08-25
 United States SARS-CoV-2/human/USA/UF-24/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T A7981G C9967T C10198T C14408T C15480T A23403G G25563T

MT967923
 2020-04-22 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6195/2020
 C241T C1059T C3037T C5512T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT967975
 2020-04-22 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6536/2020
 C241T C3037T C14408T C16830T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MW001245
 2020-04-22 2020-09-14
 United States SARS-CoV-2/human/USA/227-oropharyngeal/2020
 C241T C1059T C3037T C14408T C20371T A23403G G25563T G28109T AAAAAAAAAAAAAAAAAAAAA29883-

MW001246
 2020-04-22 2020-09-14
 United States SARS-CoV-2/human/USA/228-nasopharyngeal/2020
 C241T C1059T C3037T T7386C C14408T G18255T G21986A A23403G A23994C G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW001248
 2020-04-22 2020-09-14
 United States SARS-CoV-2/human/USA/228-oropharyngeal/2020
 C241T C1059T C3037T T7386C C14408T G18255T G21986A A23403G A23994C G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_435400
 2020-04-23 2020-05-04
 United States hCoV-19/USA/WI-GMF-01602/2020
 C241T C715T C1059T C3037T T3741C T9067C C11916T C14408T A23403G A23586G G25563T

EPI_ISL_435545
 2020-04-23 2020-05-05
 United States hCoV-19/USA/NY-NYUMC480/2020
 C241T C619T C1059T C3037T C14408T A14912G A20667G A23403G G25563T

EPI_ISL_435695
 2020-04-23 2020-05-05
 Singapore hCoV-19/Singapore/90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- G4390T C6310A C6312A G11083T C13730T C19524T C23929T C28311T T29847Y AAAAAAAAAAAA29892-

EPI_ISL_436615 MT706428
 2020-04-23 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T115C C241T C2416T C3037T C14408T A23403G C24621T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436616 MT706429
 2020-04-23 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T T12112C C14408T G21974C A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436617 MT706430
 2020-04-23 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438162
 2020-04-23 2020-05-12
 United States hCoV-19/USA/WA-S609/2020
 C2523T G3231T C8782T C17747T A17858G C18060T A20097G T28144C C28833T

EPI_ISL_438163
 2020-04-23 2020-05-12
 United States hCoV-19/USA/WA-S610/2020
 C241T C1059T A2138G C3037T C14408T A23403G A23985G G25563T A27253G C29022T G29081T

EPI_ISL_438165
 2020-04-23 2020-05-12
 United States hCoV-19/USA/WA-S612/2020
 C241T C1059T C3037T C14408T A23403G G25563T A27253G

EPI_ISL_438166
 2020-04-23 2020-05-12
 United States hCoV-19/USA/WA-S613/2020
 C241T C1059T C3037T C5392T C14408T A23403G G25563T

EPI_ISL_438167
 2020-04-23 2020-05-12
 United States hCoV-19/USA/WA-S614/2020
 C241T C1059T C3037T G11083T C14408T G20033C A23403G G25563T A27253G

EPI_ISL_438168
 2020-04-23 2020-05-12
 United States hCoV-19/USA/WA-S615/2020
 C241T C1059T C3037T C14408T C18657T A23403G G25563T

EPI_ISL_438169
 2020-04-23 2020-05-12
 United States hCoV-19/USA/WA-S616/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_438594
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81F0A/2020
 C241T C3037T C5178T C8994T C14408T A23403G GGG28881AAC

EPI_ISL_438644
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-829DE/2020
 C241T C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_438645
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-829FC/2020
 C241T C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_438647
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82A17/2020
 C241T C3037T C14408T C19366T C22550T A23403G GGG28881AAC

EPI_ISL_438649
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82A44/2020
 C241T G2626A C3037T C14408T C14805T C21691T A23403G GGG28881AAC

EPI_ISL_438650
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82A53/2020
 G1440A G2891A C10507T C14411T C26858T

EPI_ISL_438652
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82A71/2020
 C241T A2775G C2940T C3037T T9508C C14408T C21648T A23403G A26557G

EPI_ISL_438656
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82ABD/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_438658
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82ADB/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_438660
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82B14/2020
 C241T G2626A C3037T C14408T C14805T A23403G GGG28881AAC

EPI_ISL_438662
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82B32/2020
 C241T C3037T T10150C C14408T A23403G C25350T

EPI_ISL_438671
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82C20/2020
 C241T T1294C C3037T C14408T A23403G G27008T GGG28881AAC -29686C

EPI_ISL_438677
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82C99/2020
 C241T C1059T C1218T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_438682
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83CF2/2020
 C241T C3037T C3096T T9485C C14408T A23403G G25429T

EPI_ISL_438687
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83D68/2020
 C241T C3037T G8612T C14408T A23403G GGG28881AAC G29705T

EPI_ISL_438689
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83D86/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_438702
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83E74/2020
 C241T C3037T G6446A C12138T C14408T A23403G C27503T GGG28881AAC

EPI_ISL_439003
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439005
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR2989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A20137G A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439206
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2432/2020
 C241T C3037T A10874G C14408T A23403G G25429T C25916T T26677C

EPI_ISL_439207
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2435/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_439208
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2440/2020
 C241T C313T C3037T T3268C C14408T A23403G C26894T GGG28881AAC

EPI_ISL_439210
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2446/2020
 C241T C2003T T2987C C3037T A3215G C14408T C14724T G15438T A20268G A23403G

EPI_ISL_439211
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2451/2020
 C241T C1059T C1076T C3037T C10582T T10963A C14408T A23403G G25563T

EPI_ISL_439213
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2458/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_439214
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2462/2020
 C241T C3037T C6573T C14408T G21920T A23403G C25528T G27715T GGG28881AAC

EPI_ISL_439216
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2466/2020
 C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_439217
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2467/2020
 C241T C3037T C14408T A20268G G22225T A23403G C27970T T29753C

EPI_ISL_439218
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2468/2020
 C241T C1427T C3037T C5079T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_439219
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2471/2020
 C241T C3037T C14408T A20268G A23403G C28854T C29541T

EPI_ISL_439220
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2476/2020
 C241T C3037T C14408T C14925T A23403G GGG28881AAC

EPI_ISL_439221
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2483/2020
 C241T C3037T C5812T C12005T C14408T G15439A C20483T A23403G G25429T G25687T C28737T

EPI_ISL_439222
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2488/2020
 C241T C2940T C3037T C14408T A23403G T27580C

EPI_ISL_439223
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2518/2020
 C241T C1059T C1076T C3037T G9398A C9598T C10582T C14408T G20173T G22309A A23403G G25563T C26461T

EPI_ISL_439224
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2533/2020
 C241T C3037T C3656T C14408T G19184T A23403G GGG28881AAC

EPI_ISL_439228
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2554/2020
 C241T C3037T C14408T A15834G A23403G G26615T C27765T GGG28881AAC

EPI_ISL_439231
 2020-04-23 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2563/2020
 C241T T2987C C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_445241
 2020-04-23 2020-05-15
 Sweden hCoV-19/Sweden/20-07741/2020
 C4321T C8782T G11230T T15804C C18647T C23896T T28144C G28167A G28878A G29742A

EPI_ISL_447231
 2020-04-23 2020-05-16
 Democratic Republic of the Congo hCoV-19/DRC/3653/2020
 ATTAAAGGTTTA1- C241T C3037T A3245T C6525T C8293T C14408T T18488C G19872T A23403G T24739C A26530G AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_448311
 2020-04-23 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9401/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C14898T G21724K A23403G C28754T GGG28881AAC

EPI_ISL_448312
 2020-04-23 2020-05-19
 United Kingdom hCoV-19/England/NORW-E942F/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_448328
 2020-04-23 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9744/2020
 ATTA1- C241T C3037T C8367T C14408T C17304T C19524T A23403G G25302T G25455T GGG28881AAC

EPI_ISL_448335
 2020-04-23 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9805/2020
 ATTAAAGGT1- C241T C1943T C2704T C3037T C14408T A15249G A23403G C25047T C25658T GGG28881AAC

EPI_ISL_448336
 2020-04-23 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9814/2020
 A1- C241T C1121T C3037T C4173T C4543Y C8367T C14408T C18526T C19524T A23403G GGG28881AAC C29366T

EPI_ISL_448339
 2020-04-23 2020-05-19
 United Kingdom hCoV-19/England/NORW-E987E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A10892R C13862T C14408T T19330C A23403G C28836T

EPI_ISL_448340
 2020-04-23 2020-05-19
 United Kingdom hCoV-19/England/NORW-E988D/2020
 ATTAAAGGTTTA1- C36T C241T C1684T C3037T C12915T C14408T G14829T A20268G G21255T A23403G C29870M

EPI_ISL_448341
 2020-04-23 2020-05-19
 United Kingdom hCoV-19/England/NORW-E98BA/2020
 A1- G219K C241T C3037T C14408T C14898T A23403G C28754T GGG28881AAC

EPI_ISL_448445
 2020-04-23 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110FB4/2020
 C241T C1862T C3037T C4002T C7834T G10097A G11083T C13536T C14408T A23403G C23731T C28677T GGG28881AAC

EPI_ISL_449176
 2020-04-23 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR2983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449290
 2020-04-23 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4295/2020
 C241T C3037T C10798A C13862T C14408T A23403G G24867T C27145T C28836T

EPI_ISL_450288
 2020-04-23 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8876S/2020
 C241T C3037T G4201T C14408T A23403G

EPI_ISL_450289
 2020-04-23 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8890S/2020
 C241T C3037T C14408T A20268G A23403G GGG28881AAC

EPI_ISL_450290
 2020-04-23 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8913S/2020
 C241T C3037T C3602T C14408T A23403G

EPI_ISL_450291
 2020-04-23 2020-05-20
 Russia hCoV-19/Russia/StPetersburg-RII8934S/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29303T

EPI_ISL_450815
 2020-04-23 2020-05-22
 Sweden hCoV-19/Sweden/20-07737/2020
 C241T C703T C1059T C1824T C3037T C14408T C19862T A23403G G24368T G25563T C29836T

EPI_ISL_450818
 2020-04-23 2020-05-22
 Sweden hCoV-19/Sweden/20-07768/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_450821
 2020-04-23 2020-05-22
 Sweden hCoV-19/Sweden/20-07860/2020
 C241T C593T C3037T C14408T C23230A A23403G C26447T GGG28881AAC C28887T

EPI_ISL_450822
 2020-04-23 2020-05-22
 Sweden hCoV-19/Sweden/20-07861/2020
 C241T C3037T C14408T A23403G C26447T GGG28881AAC C28887T

EPI_ISL_451204
 2020-04-23 2020-05-24
 United States hCoV-19/USA/LA-EVTL043/2020
 C241T C1059T C3037T G7756T C10188T C10458T C14408T G14653T A23403G T24982C G25563T C27964T A29382G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451212
 2020-04-23 2020-05-24
 United States hCoV-19/USA/LA-EVTL051/2020
 C241T C1059T C3037T C14408T C16726T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_452083
 2020-04-23 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-245/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T C27509T

EPI_ISL_452084
 2020-04-23 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-246/2020
 C241T C1059T C3037T C9803T C14408T A23403G G25563T

EPI_ISL_452085
 2020-04-23 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-247/2020
 C241T C3037T C14408T A23403G G28392A GGG28881AAC

EPI_ISL_452237
 2020-04-23 2020-05-27
 Sweden hCoV-19/Sweden/20-07856/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_453638
 2020-04-23 2020-05-27
 United Kingdom hCoV-19/England/NOTT-11127E/2020
 C241T A385G C2706T C3037T C14408T C16457T A23403G GGG28881AAC

EPI_ISL_453639
 2020-04-23 2020-05-27
 United Kingdom hCoV-19/England/NOTT-11128D/2020
 C241T A385G C2706T C3037T C14408T C16457T A23403G GGG28881AAC

EPI_ISL_453640
 2020-04-23 2020-05-27
 United Kingdom hCoV-19/England/NOTT-11129C/2020
 C241T A385G C2706T C3037T C14408T C16457T A23403G GGG28881AAC

EPI_ISL_453641
 2020-04-23 2020-05-27
 United Kingdom hCoV-19/England/NOTT-1112AB/2020
 C241T A385G C2706T C3037T C14408T C16457T A23403G GGG28881AAC

EPI_ISL_453701
 2020-04-23 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C2AC0/2020
 C241T C3037T C14408T A17367T G22427A A23403G G27441T GGG28881AAC

EPI_ISL_453703
 2020-04-23 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C2BDC/2020
 ATG1605- A1904G C8090T C10789T A12796C C28609T C28657T C29614T

EPI_ISL_453707
 2020-04-23 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C3C7E/2020
 C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_453710
 2020-04-23 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C4615/2020
 C241T C1190T C10186T C14408T A23403G GGG28881AAC

EPI_ISL_453713
 2020-04-23 2020-05-27
 United Kingdom hCoV-19/England/SHEF-C4D6B/2020
 C241T C14408T A23403G GGG28881AAC

EPI_ISL_453746
 2020-04-23 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CC4AA/2020
 C241T C3037T G8201A C14408T A22019G A23403G GGG28881AAC

EPI_ISL_453749
 2020-04-23 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CD1DF/2020
 C241T C1190T C3037T C10186T C14408T A23403G GGG28881AAC

EPI_ISL_453753
 2020-04-23 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CDA3E/2020
 C241T T7438C G10097A C14408T A23403G G28580T GGG28881AAC

EPI_ISL_453756
 2020-04-23 2020-05-27
 United Kingdom hCoV-19/England/SHEF-CDE8D/2020
 C241T C3037T C7299T C14408T A23403G C23430T GGG28881AAC

EPI_ISL_454582
 2020-04-23 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/22001/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454830
 2020-04-23 2020-05-29
 India hCoV-19/India/SMSCOV109/2020
 C6312A G11083T C13730T G23608T C23929T C28311T C29732T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_455359 MW008590
 2020-04-23 2020-05-29
 United States SARS-CoV-2/human/USA/GA-EHC-209C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G376A C1059T C3037T C13421A C14408T A23403G G25563T G29736T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_455682 MT539729
 2020-04-23 2020-05-31
 United States SARS-CoV-2/environment/USA/UF-12/2020
 C241T C1059T C3037T A4386G C10319T C14408T A23403G G25563T C27964T AAAAAAAA29896-

EPI_ISL_456144
 2020-04-23 2020-06-02
 Colombia hCoV-19/Colombia/INS-103039/2020
 C241T C3037T C10507T C14408T C18877T A23403G G25563T T29856A

EPI_ISL_457303
 2020-04-23 2020-06-02
 United Kingdom hCoV-19/England/NORT-284EAE/2020
 C2558T C5944T T6791G G11083T C14805T G19518T C23577T G26144T G28851T

EPI_ISL_457583
 2020-04-23 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C0C08/2020
 C241T C1190T C3037T C10186T C14408T A23403G GGG28881AAC

EPI_ISL_457597
 2020-04-23 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C3063/2020
 C241T C3037T C14408T A23403G C25350T C28253T C28887T

EPI_ISL_458146
 2020-04-23 2020-06-03
 Brazil hCoV-19/Brazil/PA164173-IEC/2020
 A12G C241T C3037T A6319G C14408T A23403G G25088T T26149C GGG28881AAC

EPI_ISL_458287 MT513758
 2020-04-23 2020-05-26
 Morocco SARS-CoV-2/Humain/MAR/OUA677_19/2020
 ATTAA1- G198A C241T C3037T C14408T G15380T C18508T A23403G T28738A AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_460777
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7044T T13006C C14408T A17615G A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460833
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/Flevoland_10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460834
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/Flevoland_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460843
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/Flevoland_9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461025
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11438G C11878T C14408T A23403G G23545A C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461042
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7119T C9223T T11638C C14408T A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461043
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9223T T11638C C14408T A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461044
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTCATGTTA510- C3037T C9223T A10323G T11638C C14408T A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461229
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T G3856A C5314T G11410A C14408T C16017T T16515C A23403G A27083C T27413A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461230
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1944T C3037T C5147A C10277T C14408T A23403G GGG28881AAC G29781T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461297
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C11109T C12415T C14408T T19159G G21800T A23403G G25563T G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461353
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461359
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T C23191T A23403G G25598T C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461360
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G C28932T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461361
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461363
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11083T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461364
 2020-04-23 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11083T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461603
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR2947/2020
 C241T C3037T C14408T G21268T G22708T C22879A A23403G

EPI_ISL_461607
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR2953/2020
 C241T C3037T C14408T C22879A A23403G

EPI_ISL_461613
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR2996/2020
 C241T C3037T C10798A C13862T C14408T C17012T A23403G C28836T

EPI_ISL_461614
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR2997/2020
 ATG1605- C10279T C12710T A27665G C28854T

EPI_ISL_461615
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR2999/2020
 C241T C3037T C14408T C22879A A23403G C26133T C29774T

EPI_ISL_461616
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3002/2020
 C241T C3037T C14408T G22708T C22879A A23403G G27147T C27454T

EPI_ISL_461618
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3009/2020
 C241T C3037T C4438T C4586T C14408T C22879A A23403G C23987T

EPI_ISL_461619
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3010/2020
 C241T C3037T C14408T G19999T G22708T C22879A A23403G

EPI_ISL_461620
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3011/2020
 C241T C2189A C3037T C14408T G15444T T18260C A23403G GGG28881AAC G29134T

EPI_ISL_461621
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3012/2020
 C241T C3037T G13571T C14408T C22879A A23403G G29000T

EPI_ISL_461622
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3013/2020
 C241T G2534A C3037T C14408T A23403G C25925T G26615T GGG28881AAC

EPI_ISL_461623
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3015/2020
 C241T C3037T C14408T G19999T G22708T C22879A A23403G

EPI_ISL_461626
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3033/2020
 C241T C527T A2269G C3037T C13730T C14408T A23403G G25429T C28121T

EPI_ISL_461628
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3036/2020
 C241T C3037T C9808T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_461638
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C5467T C14408T A23403G C26111T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_461642
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_461764
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/England/LOND-D6A50/2020
 C241T C3037T C8841T C14408T A23403G C25710T GGG28881AAC

EPI_ISL_461766
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/England/LOND-D6A7E/2020
 C241T C3037T C8841T C14408T A23403G C25710T GGG28881AAC

EPI_ISL_461767
 2020-04-23 2020-06-06
 United Kingdom hCoV-19/England/LOND-D6A8D/2020
 C241T C3037T C14408T A23403G C27972T GGG28881AAC

EPI_ISL_462151
 2020-04-23 2020-06-08
 Belgium hCoV-19/Belgium/rega-0423297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C26340T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462152
 2020-04-23 2020-06-08
 Belgium hCoV-19/Belgium/rega-0423298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G25538A C26340T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462153
 2020-04-23 2020-06-08
 Belgium hCoV-19/Belgium/rega-0423299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C26340T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462154
 2020-04-23 2020-06-08
 Belgium hCoV-19/Belgium/rega-0423300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C26340T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462155
 2020-04-23 2020-06-08
 Belgium hCoV-19/Belgium/rega-0423301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C26340T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462156
 2020-04-23 2020-06-08
 Belgium hCoV-19/Belgium/rega-0423302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C18570T C26028T C26340T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462157
 2020-04-23 2020-06-08
 Belgium hCoV-19/Belgium/rega-0423303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C26340T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462317
 2020-04-23 2020-06-08
 Singapore hCoV-19/Singapore/199/2020
 C6310A C6312A C11074T G11083T C12756Y C13730T C19524T C23185T C23929T A26896R C28311T AAAAAAAAAAAA29892-

EPI_ISL_462437 MT569473
 2020-04-23 2020-06-05
 Serbia SARS-CoV-2/human/SRB/KV27-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462732 MT585010
 2020-04-23 2020-06-08
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20650/2020
 C241T C1059T C3037T T8899C C14408T A23403G G25563T

EPI_ISL_462733 MT585011
 2020-04-23 2020-06-08
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20651/2020
 C241T C337T C1059T C3037T C4113Y T8899C C14408T T15849Y C21575T A23403G G25563T C29774T AAAAAAAAAAAAAAA29889-

EPI_ISL_463096 MT609560
 2020-04-23 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0292/2020
 ATT1- C241T C1059T C3037T C4230A C14408T A23403G C25318T G25563T C29870M

EPI_ISL_463097 MT609561
 2020-04-23 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0294/2020
 C241T C619T C1059T C3037T C5986T G6439A C14408T A14912G A18239G G18859T A23403G G25563T TTTTAAAGTTTCCATTTGGAATCTTGA27264- C29870A

EPI_ISL_463337 MT642081
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S847/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C10301A C10833T C14408T C21711T G21987T A23403G C24382T G25563T C27630T G28122T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463338 MT642212
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S848/2020
 ATTAAAGGTTTATAC1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463339 MT642249
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S849/2020
 AT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463340 MT642315
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S850/2020
 ATTAAAGGTTTAT1- G354A C2070T C8782T C17747T A17858G C18060T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463351 MT642240
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S861/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463354 MT642313
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S864/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463358 MT642288
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S868/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C4993T C14408T A15593G C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463359 MT642203
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S869/2020
 ATTAAAG1- C241T A2161G C3037T C4993T C14408T A15593G C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463369 MT642257
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S879/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463370 MT642220
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S880/2020
 AT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463371 MT642391
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S881/2020
 ATTAAAGGTTT1- C8782T G15406A C17010T C17747T A17858G C18060T G21159A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463418 MT642102
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S928/2020
 AT1- C241T C1059T C3037T C3487T G11083T C12880T C14408T A23403G G25563T G29553A A29806G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463419 MT642172
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S929/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G C24382T G25563T C27630T A29437G G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463420 MT642201
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S930/2020
 ATTAAAG1- C241T C1059T C3037T C10128T C14408T A23403G C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463421 MT642086
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S931/2020
 AT1- C241T C1059T C3037T T13216C C14408T T15123A A23403G G24328C C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463422 MT642194
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S932/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T T13216C C14408T A23403G G24328C C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463423 MT642104
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S933/2020
 ATT1- C241T T844G C1059T C3037T G11417T C14408T A23403G C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463424 MT642265
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S934/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463425 MT642263
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S935/2020
 AT1- C241T C1059T C3037T C14408T A23403G C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463426 MT642290
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S936/2020
 ATTAAAG1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463427 MT642319
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S937/2020
 ATTAAAGGTTTATA1- C241T A2161G C3037T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463428 MT642143
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S938/2020
 AT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463429 MT642152
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S939/2020
 AT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_463430 MT642277
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S940/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463431 MT642252
 2020-04-23 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S941/2020
 AT1- C241T C1059T C3037T C14408T A23403G C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463996
 2020-04-23 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0071/2020
 C241T C1059T C3037T C9611T C14408T A23403G G25563T

EPI_ISL_466895
 2020-04-23 2020-06-12
 Germany hCoV-19/Germany/BAV-MVP0225/2020
 C8782T C20762T C21646T G22468T A24877G T28144C G28878A

EPI_ISL_467802 MT680236
 2020-04-23 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0408/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_468095
 2020-04-23 2020-06-16
 United States hCoV-19/USA/OR-OHSU-0075/2020
 A4236G G11083T T11142C C14805T T25655C G26144T

EPI_ISL_468421 MT628156
 2020-04-23 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1460/2020
 C241T C379A C1059T C3037T T9440A C14408T A20706G A23403G G25012A G25563T G28328A

EPI_ISL_468422 MT628157
 2020-04-23 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1461/2020
 C241T C379A C1059T C3037T T9440A C14408T A20706G A23403G G25012A G25563T G28328A

EPI_ISL_468486
 2020-04-23 2020-06-16
 United States hCoV-19/USA/CA-CZB-1541/2020
 ATTAAAGGT1- C241T A1189G C3037T G10793T C14408T C18877T A23403G G25563T C25782T G27514T G28028T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468487 MT628211
 2020-04-23 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1542/2020
 ATT1- C241T C832T C3037T A10855R C13372Y C14408T A23403G A28779G GGG28881AAC

EPI_ISL_469532
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1271F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T G13624T C14408T C19170T G19509A T23221G A23403G C23625T G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469543
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-126EDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T A25201R G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469547
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12708A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C147T C241T C3037T C14408T A23403G G24577A T27384C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469549
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1270D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A21137G C22747T A23403G C25000T T27152C A29556T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469558
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-126EAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G9190K C14408T A23403G G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469583
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1270E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C17327A G19825A A23403G G25563T G27204T C27688T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469626
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-126EFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T7315Y G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469637
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9646A G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469641
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12705D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C20233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469649
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469684
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12712D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10540T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469686
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1272C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T G28221T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469697
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12707B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843K C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469701
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12714B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1670T C3037T C14408T A23403G A26162G T28046C GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469705
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-126F51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1541T C3037T C3096T A11439R C12459T T12523C C14408T G21255T A23403G A25874R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469710
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-126FBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G10096A C14408T G18040T A23403G G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469713
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12706C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469723
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-126EEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469725
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12704E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G24834A G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469741
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-126E90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T G2155T C3037T C14408T A23403G G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469742
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-126F33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2395T C3037T C6573T C8481A C14408T G17280T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469745
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-126F06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G28851T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469804
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1270C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24577A T27384Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469853
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-FF81B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T G6479A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469858
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-FF6D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4255A C4999T C14408T A23403G C23601T C28603Y GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469889
 2020-04-23 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-FF7E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G G27382T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471919
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/England/EXET-136D54/2020
 C241T C3037T C5005T C10156T C14408T G22139T A23403G GGG28881AAC

EPI_ISL_471925
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/England/EXET-136DDC/2020
 C241T C3037T C5005T C10156T C14408T G22139T A23403G GGG28881AAC

EPI_ISL_471935
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/England/EXET-136F30/2020
 C203T C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_473059
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160E5E/2020
 C241T C3037T C4467T C14408T A23403G C25509A C26882T GGG28881AAC

EPI_ISL_473637
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2965/2020
 C241T C3037T C14408T C22879A A23403G

EPI_ISL_473642
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR2998/2020
 C241T C3037T C14408T G19999T G22708T C22879A A23403G

EPI_ISL_474065
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163C9D/2020
 C241T C3037T C14408T C14741T G18634T C22997T A23403G T24923C

EPI_ISL_474096
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163E97/2020
 AT1- C241T C3037T C6026T G11801A C14408T T19839C A23403G G25552T AG28877TC GGG28881AAC

EPI_ISL_474195
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164573/2020
 ATTA1- C64Y C241T C1059T C3037T C10376T C14408T G18583T A23403G G23868K G24368T G25563T G27390S G29773T

EPI_ISL_474497
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-35916/2020
 A1- C241T G1589R C3037T C14408T A23403G G25429T G25617K G29474T AAAA29900-

EPI_ISL_474984
 2020-04-23 2020-06-23
 Israel hCoV-19/Israel/CVL-n-10864/2020
 C241T C2416T C3037T C14408T C14877T A23403G G25563T

EPI_ISL_475164
 2020-04-23 2020-06-23
 Sweden hCoV-19/Sweden/20-50996/2020
 C241T C703T C1059T C3037T C14322T C14408T G22331A A23403G G24368T G25563T C29836T

EPI_ISL_475306
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0F28/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_475307
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0F37/2020
 C241T C3037T C14408T C18755T A23403G GGG28881AAC

EPI_ISL_475310
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0F64/2020
 C241T C3037T C14408T C18755T A23403G GGG28881AAC

EPI_ISL_475311
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0F73/2020
 C241T C3037T C14408T C18755T A23403G GGG28881AAC

EPI_ISL_475312
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0F82/2020
 C241T C1441T C3037T C14408T T18398C T22283C A23403G G24781T GGG28881AAC

EPI_ISL_475315
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0FBF/2020
 C241T C3037T C5340T T9642G C14408T A23403G G25429T

EPI_ISL_475318
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0FFB/2020
 C241T C593T C3037T C9051T C14408T C16260T T19839C C21597T A23403G C26681T GGG28881AAC

EPI_ISL_475319
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D1024/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475320
 2020-04-23 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D1042/2020
 C241T C3037T C6968T C14408T C15212T A23403G C24099T GGG28881AAC

EPI_ISL_476032
 2020-04-23 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20895/2020
 C241T C1059T C3037T T8899C C14408T A23403G G24776C G25563T

EPI_ISL_476033
 2020-04-23 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20896/2020
 C241T C1059T C3037T T8899C C14408T A23403G G24776C G25563T

EPI_ISL_476038
 2020-04-23 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20901/2020
 C241T G509A C1059T C3037T C14408T A23403G T24224Y G25563T C29784Y

EPI_ISL_476039
 2020-04-23 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20902/2020
 C241T C1059T C3037T C6363T C14408T A23403G G25563T

EPI_ISL_476707
 2020-04-23 2020-06-25
 United States hCoV-19/USA/MN-MDH-1122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C203T C241T C539T C1059T C3037T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_476708
 2020-04-23 2020-06-25
 United States hCoV-19/USA/MN-MDH-1123/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_476709
 2020-04-23 2020-06-25
 United States hCoV-19/USA/MN-MDH-1124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C36T C241T C539T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_476710
 2020-04-23 2020-06-25
 United States hCoV-19/USA/MN-MDH-1125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C539T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_476711
 2020-04-23 2020-06-25
 United States hCoV-19/USA/MN-MDH-1126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C92T C241T C1059T C2558T C3037T C14408T A23403G G25437T G25563T A27821G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_476712
 2020-04-23 2020-06-25
 United States hCoV-19/USA/MN-MDH-1127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_477744
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/BIRM-61094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12396T C14408T C22570T A23403G A27989G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477746
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/BIRM-610B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4347T C8139T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477747
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/BIRM-610C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22570T A23403G C24138T GGG28881AAC A29763G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477749
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/BIRM-610FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C3037T C3261T C14408T A15984T C20946T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477751
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/BIRM-61119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2246A C3037T C14408T C22570T A23403G C27903T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477752
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/BIRM-61128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9391T C9951T C11758T G14400T C14408T C20283T C21034T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477819
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/CAMB-83D2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T A23403G GAACTGCAAGATCATAATG27852- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478047
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3689A C4551Y T11660A C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478050
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR2955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C17012T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478894
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0649/2020
 C241T C3037T C14408T C19488T A23403G GGG28881AAC C29625T AAAAAAAAAAAAA29891-

EPI_ISL_478908
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/OXON-B07CE/2020
 C241T C3037T C3157T G10097A C13860T C14408T A23403G C23731T GTGCCA27626- G28580T GGG28881AAC

EPI_ISL_478963
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0D80/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_478991
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1086/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T G1729A C3037T C14408T C19488T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_478995
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/OXON-B10C2/2020
 C241T C3037T G10328T A10948G C11976T C14408T A19182G A23403G C27542T GGG28881AAC G29202A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_479003
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/OXON-B12EA/2020
 C241T C823T C3037T C14408T T18831C A23403G GGG28881AAC AAAAAAAAAAAAAA29890-

EPI_ISL_479027
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/OXON-B15C3/2020
 G204C ATG1605- G6642T C10702T A15891G C17690T A19155G C29530T A29885M

EPI_ISL_479056
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/OXON-B196D/2020
 C241T A1630C C3037T C14408T C19011T A23403G C27679T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_479064
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1A2E/2020
 C241T C1884T C3037T C14408T G21724T A23403G C24096T GGG28881AAC AAA29901-

EPI_ISL_479120
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2146/2020
 C241T C1884T C3037T C14408T G21724T A23403G C24096T GGG28881AAC AAAA29900-

EPI_ISL_479122
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2164/2020
 C241T C3037T C11575T G11801A C14408T T19839C A23403G G25552T GGG28881AAC AAAAA29899-

EPI_ISL_479279
 2020-04-23 2020-06-30
 United Kingdom hCoV-19/England/SHEF-D283C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2062T A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480244
 2020-04-23 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV092/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_480880 MT704047
 2020-04-23 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0229/2020
 AT1- C241T C1059T C1884T C3037T C14408T A23403G G25471C G25563T G26065T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_480882 MT704049
 2020-04-23 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0231/2020
 C241T C601T C1174T C3037T C8389T A11579G C14408T C18486T T21581G A23403G G25563T G27915A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_481255
 2020-04-23 2020-07-03
 Japan hCoV-19/Japan/NGS-CD-010/2020
 ATT1- C241T G376C C3037T C3373A C10755T C11195T C14408T A23403G GGG28881AAC

EPI_ISL_481257
 2020-04-23 2020-07-03
 Japan hCoV-19/Japan/NGS-CD-024/2020
 ATT1- C241T T2901C C3037T G3230T C3373A C11195T C14408T C16468T A23403G GGG28881AAC

EPI_ISL_481258
 2020-04-23 2020-07-03
 Japan hCoV-19/Japan/NGS-CD-107/2020
 C241T C3037T C3373A G3514T C11195T C14408T A23403G C23604A G25437T GGG28881AAC

EPI_ISL_482105
 2020-04-23 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-FF7C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7065S C10594T C14408T A17342G A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482372
 2020-04-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-102/2020
 C241T C1059T C3037T T3312C C14408T A23403G G25563T

EPI_ISL_482373
 2020-04-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-103/2020
 C4876T G11083T C14805T GCTTTA22289- G26144T C29614T

EPI_ISL_482374
 2020-04-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-106/2020
 C241T C1059T C3037T A13300T C14408T C17125T C18086T A23403G G25563T A26528T A28492T

EPI_ISL_482375
 2020-04-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-107/2020
 C241T C280T C3037T C6027T C11563T C14408T C18877T A23403G G24550A G25563T

EPI_ISL_482376
 2020-04-23 2020-07-03
 United States hCoV-19/USA/OR-PROV-108/2020
 C241T T2698C C3037T C11563T G14209T C14408T C17678T C18877T A23403G G25563T C29675T C29754T

EPI_ISL_482820
 2020-04-23 2020-07-06
 Spain hCoV-19/cat/Spain/IrsiCaixa-G5/2020
 C241T C3037T T4129Y T13933W C14408T A23403G C29013T GCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29742-

EPI_ISL_483268
 2020-04-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0629-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G3242A C4582T C8175T C14408T A20268G A23403G

EPI_ISL_483269
 2020-04-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0630-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C5812T C14408T A23403G G25563T

EPI_ISL_483270
 2020-04-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0631-IPL/2020
 ATT1- C241T C3037T C9665T C10156T C14408T A20268G A23403G T24076C C25587T C28854T

EPI_ISL_483275
 2020-04-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0642-SAN/2020
 C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T

EPI_ISL_483277
 2020-04-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0645-IPL/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483397
 2020-04-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0849-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1887T C3037T C13667T C14408T C16457T A23403G G25563T

EPI_ISL_483451
 2020-04-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0997-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T A29436G

EPI_ISL_483452
 2020-04-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0998-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483464
 2020-04-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1016-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C9665T C10156T C14408T A20268G A23403G T24076C C25587T C28854T

EPI_ISL_483467
 2020-04-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1021-IPL/2020
 ATTA1- C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_484368
 2020-04-23 2020-07-08
 United Kingdom hCoV-19/England/NOTT-1122F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29579T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484514
 2020-04-23 2020-07-08
 United Kingdom hCoV-19/England/SHEF-D125D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2536T C3037T C14408T C16260T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484655
 2020-04-23 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR3003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C7945T C12710T T15915C C28315T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484656
 2020-04-23 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR3007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485068
 2020-04-23 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26512999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485218
 2020-04-23 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26629204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485220
 2020-04-23 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26629211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C2334T C3037T C14408T A23403G G23915A G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486137 MT750346
 2020-04-23 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T18817C G18898T C21772T A23122R A23403G T25902W T25908W G25913S C26873T GGG28881AAC C29870M

EPI_ISL_486212 MT750406
 2020-04-23 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G18898T C19672Y C21772T A22904M A23122V A23403G T25902W T25908W G25913S GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_486213 MT750407
 2020-04-23 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A30R C241T C3037T C14408T T18817C G18898T C21772T A23122R A23403G T25902W T25908W G25913S C26873T GGG28881AAC

EPI_ISL_486215 MT750409
 2020-04-23 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G18898T C21772T A23122R A23403G T25902W T25908W GGG28881AAC

EPI_ISL_486216 MT750410
 2020-04-23 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A3285G C14408T G18898T C21772T A22904M A23122V A23403G GGG28881AAC

EPI_ISL_486383
 2020-04-23 2020-07-10
 India hCoV-19/India/nimh-3959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C3634T A3742G C5055T G11083T C14408T C15324T G16945A A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_486394
 2020-04-23 2020-07-10
 India hCoV-19/India/nimh-3720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C1281T C6312A T8022G C13730T C16092T G16943T C23929T G25437T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486870
 2020-04-23 2020-07-12
 Senegal hCoV-19/Senegal/6597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C1684T C3037T T13006C C14408T A23403G G25563T C25688T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_486881
 2020-04-23 2020-07-13
 India hCoV-19/India/nimh-3975/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3634T A3742G C5055T T8022G A8026T G11083T C14408T C15324T G16945A A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_487105
 2020-04-23 2020-07-13
 Nigeria hCoV-19/Nigeria/EK084-CV50/2020
 ATTAAA1- C241T T1675C C3037T C7772T C14408T G19292T A20374G A23403G GGG28881AAC

EPI_ISL_487108
 2020-04-23 2020-07-13
 Nigeria hCoV-19/Nigeria/EK082-CV47/2020
 ATT1- C241T T1675C C3037T C7772T C14408T G19292T A20374G A23403G GGG28881AAC

EPI_ISL_487113
 2020-04-23 2020-07-13
 Nigeria hCoV-19/Nigeria/OS294-CV42/2020
 C241T T1675C C3037T C14408T G19292T A20374G A23403G

EPI_ISL_487557
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/LOND-D664D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3256C A9243M C14408T C15371T A23403G TTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAG27553- A28624T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487558
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/LOND-D66A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T AAAATT6518- C14408T A23403G A26530G C28846T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487572
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/LOND-D662F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C6983T C7162T C14408T A15626C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487584
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/LOND-D663E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20284T G21232A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_487626
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/LOND-D6610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T T11137C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487628
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/LOND-D6601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24082T GGG28881AAC G28903T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487633
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/LOND-D666B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487760
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C12915T C14408T A20268G A23403G G27987T C28775T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487820
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14358Y C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487895
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C G10097A C14408T C17821T G18255T G18394T A23403G C23731T G26775T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487979
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T G15202T C16289T G20580T A23403G G23426T G25429T C27389T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488012
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-2984E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3923T C6606T C14408T C17119T A23403G C26461T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488056
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-29C85A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G213A C241T C3037T C14408T A23403G C27689T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488090
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-297D6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4223T C8947T C14408T A23403G G27750T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488099
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-29C76C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5144T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488102
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-29702A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T C7926T A10323G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488117
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-297163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T C4784T C7926T A10323G C14408T C16178T C21762S A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488123
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-297075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1093Y C3037T C3311T C3373A C14408T G16795C C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488132
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-29C84B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22785T A23403G C25350T C26078T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488144
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-297154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27476T G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488145
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-296FE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488156
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-29C6AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5144T C14408T A23403G G23522R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488159
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-297181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12534T C14408T C17463T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488174
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/NORT-297145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9857T C14408T A23403G G24390T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488197
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1701T C3037T C14408T A19459G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488208
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EA0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7092C G10097A C14408T C16997T A23403G C23731T G28580T C28687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488217
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E8E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C988T C3037T C7600T G8287T C14408T A23403G G28361R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488220
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EF1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10540T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488243
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E9C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A T2390C G2891A T27484C G28371K G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488308
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EA3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5175T A6721G C14408T C16877T A23403G G25563T C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488317
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EAC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488318
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EB55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G13879A G28851T C29743T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488343
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EAD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488348
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E91F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10626T G11335T C14408T C22450T C23202A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488357
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EA49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5175T A6721G C14408T C16877T G17193K A23403G G25563T C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488421
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E95B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C678T C3037T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488430
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12E9F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T G27506T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488437
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EF0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T TAT9858- C14408T C18464T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488452
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29013T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489390
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/CAMB-1ACEED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7600T C13730T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489433
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/CAMB-1AC83A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G23868T G25429T GTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTC27703- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489572
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/CAMB-1AC919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11606T C14408T C16163T A23403G C25624T C26002A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489577
 2020-04-23 2020-07-14
 United Kingdom hCoV-19/England/CAMB-1AC991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7600T C13730T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489777 MT757063
 2020-04-23 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0368/2020
 A1- C241T C1059T C3037T C10319T C14408T C19170T G20995T A23403G G25126A G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_489778 MT757064
 2020-04-23 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0369/2020
 ATTAAAGGTT1- T490A C3177T C8782T T13180C C16084T T18736C C24034T T26729C G28077C T28144C A29700G G29755T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_489780 MT757066
 2020-04-23 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0371/2020
 ATTAAAGGTTTATACCT1- T490A C3177T C8782T T13180C C16084T T18736C C24034T T26729C G28077C T28144C A29700G G29755T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_489781 MT757067
 2020-04-23 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_489782 MT757068
 2020-04-23 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0373/2020
 C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_489784 MT757070
 2020-04-23 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0375/2020
 A1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_489877 EPI_ISL_491073
 2020-04-23 2020-07-14
 Romania hCoV-19/Romania/ROSV_4271/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G ATGGAAGTCACACCTTCGGGA29237- G29825A AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827T

EPI_ISL_491433
 2020-04-23 2020-07-16
 Peru hCoV-19/Peru/INS-029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACG1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G27478T GGG28881AAC G29179T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491434
 2020-04-23 2020-07-16
 Peru hCoV-19/Peru/INS-030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C14408T C18877T A23403G G25563T ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491435
 2020-04-23 2020-07-16
 Peru hCoV-19/Peru/INS-031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACT1- C241T C3037T C14408T C18568T A23403G A26530G AGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29704-

EPI_ISL_491436
 2020-04-23 2020-07-16
 Peru hCoV-19/Peru/INS-032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAA1- C241T C3037T C4002T G10097A C12854T C13536T C14408T A21131G A23403G C23731T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_491597
 2020-04-23 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G714A A2480G C2558T G11083T C14805T C16260T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491622
 2020-04-23 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4551T T5161A C14408T T17126C A20268G A23403G A27200T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491626
 2020-04-23 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T G9398A C9598T C10582T C14408T G20173T G22309A A23403G G25563T C26461T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492747
 2020-04-23 2020-07-20
 United Kingdom hCoV-19/England/LOND-D88CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T6427G A10863G -11075TTT G11083T C14805T T17247C C21721T G26144T C26335A CCAACGGTACTA26533- C26728T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493098 MT782370
 2020-04-23 2020-07-20
 United States SARS-CoV-2/human/USA/UT-02510/2020
 AT1- C241T C3037T C14408T A23403G C27476T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_493099
 2020-04-23 2020-07-20
 United States hCoV-19/USA/UT-02511/2020
 A1- C241T C3037T G3518T C13536T C14408T G19480T A23403G T29672C

EPI_ISL_493102 MT782371
 2020-04-23 2020-07-20
 United States SARS-CoV-2/human/USA/UT-02514/2020
 A1- C241T C1059T C3037T C14408T T20049C C21627A A23403G C23655T G25563T

EPI_ISL_493114 MT782378
 2020-04-23 2020-07-20
 United States SARS-CoV-2/human/USA/UT-02530/2020
 C241T C1059T C3037T C11102T C14408T T20049C C21627A A23403G C23655T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_493482
 2020-04-23 2020-07-21
 United Kingdom hCoV-19/England/NORT-2991AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15380T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493484
 2020-04-23 2020-07-21
 United Kingdom hCoV-19/England/NORT-2991DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3475C C14408T C14786T A23403G T26130C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493485
 2020-04-23 2020-07-21
 United Kingdom hCoV-19/England/NORT-299398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493486
 2020-04-23 2020-07-21
 United Kingdom hCoV-19/England/NORT-2993A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6133G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493574
 2020-04-23 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112A1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9022C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493576
 2020-04-23 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112A39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25047T C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493578
 2020-04-23 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112A57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493580
 2020-04-23 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112A93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493581
 2020-04-23 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112AA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3264T C4540T C8782T T9477A G12731A C14805T C25714T G25979T C26029A T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494673
 2020-04-23 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494678
 2020-04-23 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1590/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_494684
 2020-04-23 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1603/2020
 C241T C1059T C3037T G11083T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_494691
 2020-04-23 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_494692
 2020-04-23 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_494704
 2020-04-23 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_494707
 2020-04-23 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1640/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_494709
 2020-04-23 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_495081
 2020-04-23 2020-07-22
 United Kingdom hCoV-19/England/WSFT-25C18AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T C14408T C21691T A23403G C25047T G28086T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495084
 2020-04-23 2020-07-22
 United Kingdom hCoV-19/England/WSFT-25C1598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10712T C14408T G18028T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495102
 2020-04-23 2020-07-22
 United Kingdom hCoV-19/England/BRIS-185465B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13617T C14318T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499327
 2020-04-23 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D3F07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3661T G5194A G10097A G13966A C14408T C21575T C23248T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499328
 2020-04-23 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D3F43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4276T A5269G A9483C C14408T A15486T A23403G C23758T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499329
 2020-04-23 2020-07-28
 United Kingdom hCoV-19/England/PORT-2D3F52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7011T C14408T A23403G G25230T GGG28881AAC G28916T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499787
 2020-04-23 2020-07-28
 United Kingdom hCoV-19/England/NORT-29C650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501174
 2020-04-23 2020-07-30
 United States hCoV-19/USA/TX-GCID-192000440/2020
 AT1CCCATGCATACAA A4G C36T C241T C1059T C2388T C3037T C10188T C11572T C14408T A23403G C23481T T24982C G25563T C27964T AA29881GTG A29885C AAAA29888TGCT AAA29893GGG A29897G

EPI_ISL_501192
 2020-04-23 2020-07-31
 Malaysia hCoV-19/Malaysia/2251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C6312A T7621C G11083T C13730T C23929T C25549T C28311T C29870A

EPI_ISL_507200
 2020-04-23 2020-08-03
 United Kingdom hCoV-19/Scotland/EDB6757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C10798A C13862T C14408T A20437G A23403G G25049T G28436T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507296
 2020-04-23 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII9364V/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14408T T17694C A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507953
 2020-04-23 2020-08-03
 United States hCoV-19/USA/MN-MDH-1365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G5017T C8782T G14350T G16968T C17747T A17858G C18060T A24694T G27561T T28144C C28310A G28812T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_507954
 2020-04-23 2020-08-03
 United States hCoV-19/USA/MN-MDH-1366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G5017T C8782T G14350T A17858G C18060T A24694T T28144C C28310A G28812T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_507955
 2020-04-23 2020-08-03
 United States hCoV-19/USA/MN-MDH-1367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G5017T C8782T G14350T A17858G C18060T A24694T T28144C G28812T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_507956
 2020-04-23 2020-08-03
 United States hCoV-19/USA/MN-MDH-1368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G5017T C8782T C10956T G14350T C17747T A17858G C18060T A24694T T28144C C28310A G28812T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_512813 MT872499
 2020-04-23 2020-08-11
 Sierra Leone SARS-CoV-2/human/SLE/KGH-G-8603/2020
 ATTAAA1- C241T C1059T C3037T C6040T C14408T A23403G G25563T A27520T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_512945
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH528/2020
 C241T C3037T C8782T C14408T C21846T A23403G G25563T C26735T TTA27698-

EPI_ISL_512946
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH529/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_512947
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH531/2020
 C241T C3037T C14408T A20094G A23403G G25563T C26735T

EPI_ISL_512948
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH534/2020
 C8782T G22468T T28144C G28878A

EPI_ISL_512949
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH535/2020
 C241T C3037T C9430T C14408T C18877T T20452C A23403G G25563T C26735T

EPI_ISL_512950
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH536/2020
 C84T C241T C14408T C14937T C18877T A20094G A23403G G25563T C26735T

EPI_ISL_512951
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH538/2020
 C241T C3037T C14408T A23403G -29866AACAAC

EPI_ISL_512952
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH539/2020
 C241T C3037T G11521C C14408T C18877T A21562- C22444T A23403G G25563T C26735T C28854T

EPI_ISL_512953
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH542/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512973
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH581/2020
 C241T C3037T G12514T C14408T C18877T G25563T C26735T

EPI_ISL_512976
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH586/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512983
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH594/2020
 C241T C14408T C16915T A23403G T24202C G25563T C26735T

EPI_ISL_512984
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH595/2020
 C241T C3037T C14408T C17285T A23403G G25563T C26735T TTA27698-

EPI_ISL_513134
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH354/2020
 C241T T2092C C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513135
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH355/2020
 C241T C1549T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513136
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH357/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513138
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH361/2020
 C241T C3037T C3736T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513139
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH362/2020
 C241T C3037T C10036T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513141
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH364/2020
 C241T C3037T A13898C C14408T C18877T A23403G G25563T C26735T T28918C

EPI_ISL_513142
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH368/2020
 C241T C3037T C14408T C18877T G25563T C26735T

EPI_ISL_513156
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH435/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513157
 2020-04-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH437/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_514082
 2020-04-23 2020-08-14
 United States hCoV-19/USA/UN-CDC-7569/2020
 C241T C3037T A7929G C14408T C21642T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_515262 MT897459
 2020-04-23 2020-08-18
 United States SARS-CoV-2/human/USA/MN-MDH-1364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G5017T C8782T G14350T A17858G C18060T A24694T T28144C C28310A G28812T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_515566
 2020-04-23 2020-08-19
 Brazil hCoV-19/Brazil/SP-623/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T A6319G C14408T T21124C A23403G G25088T T26149C GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_515941
 2020-04-23 2020-08-20
 India hCoV-19/India/nimh-3948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3634T A3742G C5055T C14408T C15324T G16945A G20709T A23403G C23635T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_515942
 2020-04-23 2020-08-20
 India hCoV-19/India/nimh-3964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C3634T A3742G C5055T C14408T C15324T G16945A G20709T A23403G C23635T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_520739
 2020-04-23 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920691421/2020
 C884T G1397A T7275A G8653T G11083T A19073G G27915T T28688C C29077T G29742T

EPI_ISL_522678 MT973319
 2020-04-23 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- AAGTCATTT686- C4540T A4624G C8782T T9477A C14805T G18972T G25979T G26062T T28144C T28251G C28253T C28311T C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_522679 MT973320
 2020-04-23 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G805A C4540T A4624G C8782T T9477A C14805T G25979T G26062T T28144C C28311T C28657T C28863T G29001R AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_523171
 2020-04-23 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T G17058T C20032T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523485
 2020-04-23 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8643C C10681T C14408T G15438T A20268G C21575T A23403G G25785T A27403T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523986
 2020-04-23 2020-08-27
 Brazil hCoV-19/Brazil/SP-203/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523992
 2020-04-23 2020-08-27
 Brazil hCoV-19/Brazil/SP-213/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C8266T C14408T A23403G C26305T T27299C GGG28881AAC T29148C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_524796
 2020-04-23 2020-08-28
 Brazil hCoV-19/Brazil/AP-IEC-164920/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_526226
 2020-04-23 2020-09-01
 Hungary hCoV-19/Hungary/MH-1421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3426T C3686T T10567C C14408T A23403G G25074T C25658T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526757
 2020-04-23 2020-09-02
 United Kingdom hCoV-19/England/201780026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T GTT6513- C14408T C15341Y T17591Y G17815A A20886R A23403G G24368T G25563T AAAAAAAAAAA29893-

EPI_ISL_527377
 2020-04-23 2020-09-03
 Singapore hCoV-19/Singapore/868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1- G2265A C6310A C6312A C6701Y G11083T C13730T C19524T C21428Y T21432Y T22297W A22456R C23638T C23929T C28311T AAAAAAAAAAAAA29891-

EPI_ISL_527671
 2020-04-23 2020-09-04
 United States hCoV-19/USA/MN-CDC-6201/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527672
 2020-04-23 2020-09-04
 United States hCoV-19/USA/MN-CDC-6205/2020
 C241T C539T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527673
 2020-04-23 2020-09-04
 United States hCoV-19/USA/MN-CDC-6208/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27213T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_530075
 2020-04-23 2020-09-10
 Spain hCoV-19/Spain/MD-LP78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10296T C14408T T17126C T18471C A20268G TTA21991- G23012C A23403G G29779T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534843
 2020-04-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B31EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGAC1- C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC T29845C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_534984
 2020-04-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B49B5/2020
 C241T C3037T C14408T T18398C A23403G G24781T G28580A GGG28881AAC

EPI_ISL_534988
 2020-04-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4A58/2020
 C241T C3037T C3373A C3923A C11195T C14408T C18252T G19455T C22530T A23403G GGG28881AAC

EPI_ISL_534990
 2020-04-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4A94/2020
 C241T C3037T T10696C C14408T T19839C A23403G G25906T C26681T GGG28881AAC T29417C A29898M AAAA29900-

EPI_ISL_534993
 2020-04-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4AC1/2020
 C241T C3037T C3373A C3923A C11195T G13459T C14408T C18252T G19455T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_534994
 2020-04-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4B19/2020
 G174A C241T C2416T C3037T C8352T C12374T C14408T C14786T G20578T A23403G G25563T C28435T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_534997
 2020-04-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4B91/2020
 C241T C3037T C14408T T19839C A23403G G25906T C26681T GGG28881AAC T29417C

EPI_ISL_534998
 2020-04-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4BCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T T18398C C21697T A23403G G24781T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_535012
 2020-04-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4D6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- G174A C241T C2416T C3037T C8352T C14408T C14786T G20578T A23403G G25563T T25833C AAAAAAAAAAAA29892-

EPI_ISL_535014
 2020-04-23 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4D8C/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC A29892R

EPI_ISL_541156
 2020-04-23 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1256/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T T13180C C16084T T18736C C24034T TTTGTAACAGTT25651- T26729C G28077C T28144C C28937T A29700G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_541697
 2020-04-23 2020-09-23
 India hCoV-19/India/MH-NIV-13768/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541698
 2020-04-23 2020-09-23
 India hCoV-19/India/MH-NIV-13804/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C14408T C16726T A23403G A23523C G25644T C26681T GGG28881AAC C29541T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541700
 2020-04-23 2020-09-23
 India hCoV-19/India/MH-NIV-13868/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C4891T C5700A C14408T A23403G C28153T GGG28881AAC G28899C A29491G G29690T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541765
 2020-04-23 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286F3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T G11083T C14408T G19072T C22477T A23403G G25563T G28882A C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542549
 2020-04-23 2020-09-23
 United States hCoV-19/USA/TX-HMH-1142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10188T C11962T C14408T A23403G T24982C G25563T C27964T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_542570
 2020-04-23 2020-09-23
 United States hCoV-19/USA/TX-HMH-1182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9163T C10319T C14408T C16995T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542576
 2020-04-23 2020-09-23
 United States hCoV-19/USA/TX-HMH-1188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C7011T C14408T A23403G G26526T G28881A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542593
 2020-04-23 2020-09-23
 United States hCoV-19/USA/TX-HMH-1226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T T29820C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542598
 2020-04-23 2020-09-23
 United States hCoV-19/USA/TX-HMH-1233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542609
 2020-04-23 2020-09-23
 United States hCoV-19/USA/TX-HMH-1247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542704
 2020-04-23 2020-09-23
 United States hCoV-19/USA/TX-HMH-1406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T2158C C3037T T6143C C14408T C16260T T17781C A23403G G25563T G27948T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542731
 2020-04-23 2020-09-23
 United States hCoV-19/USA/TX-HMH-1453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C G28812T C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547486
 2020-04-23 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1427T C3037T C14408T A23403G C24382T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548966
 2020-04-23 2020-09-28
 United Arab Emirates hCoV-19/United Arab Emirates/DU-A-S13-3_S8/2020
 ATTAAAG1- G216T G1470A A1588G C3099A C8782T C11208T C27208G T28144Y G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_548967
 2020-04-23 2020-09-28
 United Arab Emirates hCoV-19/United Arab Emirates/DU-A-S2-3_S2/2020
 ATTAAAG1- C241T C664T G2286A C3037T C3373A C11195T C13326T C14408T A23403R G25785T C26895T G28580T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_548968
 2020-04-23 2020-09-28
 United Arab Emirates hCoV-19/United Arab Emirates/DU-A-S3-3_S9/2020
 ATTAAAG1- C884T G1397A A1588G G8653T G11083T A19073R G27915T T28688C C29077T G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_548969
 2020-04-23 2020-09-28
 United Arab Emirates hCoV-19/United Arab Emirates/DU-A-S8-1_S3/2020
 ATTAAAG1- C241T C3037T C3373A CTAGTTTTCTGG5184- C11195T C14408T A23403R G28580T GGG28881AAC G29465K AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_548970
 2020-04-23 2020-09-28
 United Arab Emirates hCoV-19/United Arab Emirates/DU-A-S9-2_S4/2020
 ATTAAA1- G216T C3099A C8782T C13384T G28041A T28144Y G28878A G29140C G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_548971
 2020-04-23 2020-09-28
 United Arab Emirates hCoV-19/United Arab Emirates/DU-A-20-205_S1/2020
 ATTAAA1- C241T C3037T T11205G C14408T A20268R A23403R T28334C G29734C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_560586
 2020-04-23 2020-09-29
 France hCoV-19/France/GE8524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C21635A A23403G G23426T C28887T C29754T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560633
 2020-04-23 2020-09-29
 France hCoV-19/France/GE8807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G4181A C8655T A8658G C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568563
 2020-04-23 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C14408T A23403G A27662C GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_568954
 2020-04-23 2020-10-02
 France hCoV-19/France/IHU-0739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1912T C2416T C2910T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT627754
 2020-04-23 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S615/2020
 ATTAAAG1- C241T C1059T C3037T C14408T C18657T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627762
 2020-04-23 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S616/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627920
 2020-04-23 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S610/2020
 ATTAAAGGTTT1- C241T C1059T A2138G C3037T C14408T A23403G A23985G G25563T A27253G C29022T G29081T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627921
 2020-04-23 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S609/2020
 ATTAAAGGTTT1- C2523T G3231T C8782T C17747T A17858G C18060T A20097G T28144C C28833T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627922
 2020-04-23 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S614/2020
 ATTAAAG1- C241T C1059T C3037T G11083T C14408T G20033C A23403G G25563T A27253G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627927
 2020-04-23 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S613/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C5392T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627929
 2020-04-23 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S612/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T A27253G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT797771
 2020-04-23 2020-07-24
 United States SARS-CoV-2/human/USA/COVID20-0079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2788T C3037T C9763A C14408T A14736G T17859C A23403G G25563T A28841G C29421T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT810874
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1585-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810879
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1590-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810885
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1603-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G11083T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810892
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1620-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810893
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1621-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810905
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1634-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810908
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1640-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810910
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1643-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811281
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0629-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G3242A C4582T C8175T C14408T A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811282
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0630-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C5812T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811283
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0631-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C9665T C10156T C14408T A20268G A23403G T24076C C25587T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811288
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0642-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T G21255C A23403G GGG28881AAC G28960T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811290
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0645-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811409
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0849-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C13667T C14408T C16457T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811458
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0997-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28854T A29436G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811459
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0998-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811471
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1016-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C9665T C10156T C14408T A20268G A23403G T24076C C25587T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811474
 2020-04-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1021-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT882319
 2020-04-23 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7569/2020
 C241T C3037T A7929G C14408T C21642T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT967924
 2020-04-23 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6201/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT967925
 2020-04-23 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6205/2020
 C241T C539T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT967926
 2020-04-23 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6208/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27213T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

MW023416
 2020-04-23 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1256/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T T13180C C16084T T18736C C24034T TTTGTAACAGTT25651- T26729C G28077C T28144C C28937T A29700G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_435502
 2020-04-24 2020-05-05
 United States hCoV-19/USA/NY-NYUMC435/2020
 C157T C241T C1059T C3037T C14408T A23403G C25463T G25563T A28627G

EPI_ISL_435546
 2020-04-24 2020-05-05
 United States hCoV-19/USA/NY-NYUMC481/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_435548
 2020-04-24 2020-05-05
 United States hCoV-19/USA/NY-NYUMC483/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29372A

EPI_ISL_435549
 2020-04-24 2020-05-05
 United States hCoV-19/USA/NY-NYUMC484/2020
 C241T C449T C1059T C3037T C9474T C14408T A20755C C21590A A23403G G25563T C26456T

EPI_ISL_435555
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL017/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T C29203T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435556
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL018/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435557
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL019/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435558
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL020/2020
 C241T C1059T C3037T C5730T G11083T C14408T A23403G A25405G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435559
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL021/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435560
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL022/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T C29203T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435561
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL023/2020
 C241T C1059T C3037T C14408T C22550T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435562
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL024/2020
 C241T C1059T C3037T C14408T C21575T C22550T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435563
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL025/2020
 C241T C1059T C3037T C14408T C21637T C22550T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435564
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL026/2020
 C241T C1059T C3037T C14408T C22450T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435565
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL027/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435566
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL028/2020
 C106T C241T C1059T C3037T C14408T A23403G G25563T C27964T C29203T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435567
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL029/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435568
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL030/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435569
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL031/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T C29203T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435570
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL032/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435571
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL033/2020
 C241T C1059T C3037T C14408T C20844T A23403G G25563T C27964T C29769T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435572
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL034/2020
 C241T C1059T C3037T C14408T C22550T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435573
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL035/2020
 C241T C1059T C3037T C3045T C14408T C14786T T23030C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435574
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL036/2020
 C241T C1059T C3037T C3045T C14408T C14786T C21742T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435575
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL037/2020
 C241T C1059T C3037T C3045T C14408T C14786T C21742T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435576
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL038/2020
 C241T C1059T C3037T G12079A C14408T CG21304AA A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435578
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL040/2020
 C241T C1059T C3037T G12079A C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435579
 2020-04-24 2020-05-05
 United States hCoV-19/USA/LA-EVTL041/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436618 MT706431
 2020-04-24 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T T12112C C14408T G21974C A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436619 MT706432
 2020-04-24 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2116A C12880T C28854T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_438669
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82BD8/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_438670
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82C11/2020
 C241T C2091T C3037T C14408T G16206T A23403G C24748T GGG28881AAC

EPI_ISL_438672
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82C3F/2020
 A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_438678
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82CA8/2020
 C241T C2110T C3037T C14408T A16607G A23403G GGG28881AAC

EPI_ISL_438690
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83D95/2020
 C241T C913T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_438691
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83DA4/2020
 ATG1605- C5869T C14618A G16957A TTA21991- T27785C G29032A G29239T

EPI_ISL_438692
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83DB3/2020
 C241T C3037T C6385T C14408T A23403G G25912T GGG28881AAC

EPI_ISL_438693
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83DC2/2020
 C241T C3037T C13105T C14408T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_438700
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83E47/2020
 C241T C3037T C7600T C13730T C14408T A23403G G25429T

EPI_ISL_438740
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8413E/2020
 C241T C3037T G8612T C14408T A23403G GGG28881AAC G29705T

EPI_ISL_438971
 2020-04-24 2020-05-12
 Japan hCoV-19/Japan/Donner27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T T606C C3037T C14408T A23403G C23634T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439014
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR3024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18904T A23403G G25606T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439020
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR3030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G2100T C5170T C10341T C12213T C14529T C25511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439225
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2534/2020
 C241T G1999T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_439226
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2540/2020
 C241T C313T C3037T T3268C C14408T A23403G C26894T GGG28881AAC

EPI_ISL_439227
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2543/2020
 C241T C2485T C3037T C10645T C14408T A20268G A23403G C28854T

EPI_ISL_439229
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2557/2020
 C241T C3037T A8032G C14408T C18788T T19839C A19958T A23403G A24862G GGG28881AAC

EPI_ISL_439230
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2561/2020
 C241T C1059T C1076T C3037T C9598T C10582T C14408T G22309A A23403G G25563T G25606T C26461T

EPI_ISL_439232
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2567/2020
 C241T C2940T C3037T C14408T A23403G T27580C

EPI_ISL_439233
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2579/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_439234
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2592/2020
 C241T C3037T C14408T A20268G A23403G GG26466TC C28854T

EPI_ISL_439235
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2594/2020
 C241T C3037T C14408T C16409T A20268G A23403G GG26466TC C28854T

EPI_ISL_439236
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2597/2020
 C241T C1059T C3037T G11820A C14408T A23403G G25563T C29311T

EPI_ISL_439237
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2599/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G

EPI_ISL_440923
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9C93B/2020
 C241T C3037T G10097A C14408T C20767T A23403G C23731T C26195T GGG28881AAC G29734T

EPI_ISL_440924
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9C959/2020
 G127T C241T C3037T C3373A C12439T C14408T C14688T A23403G G27706T GGG28881AAC

EPI_ISL_440930
 2020-04-24 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9CA29/2020
 C241T C3037T C14408T C16616T A23403G GGG28881AAC C29614T

EPI_ISL_444352
 2020-04-24 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABF72/2020
 C241T C683T G1820A C3037T C14408T A23403G G28514T

EPI_ISL_445066
 2020-04-24 2020-05-14
 Luxembourg hCoV-19/Luxembourg/LNS2335124/2020
 C241T C2416T C3037T G8371T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_449294
 2020-04-24 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4324/2020
 C241T C3037T C7321T C10798A T13716C C13862T C14408T A23403G C28836T C29171T

EPI_ISL_449298
 2020-04-24 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4365/2020
 A2480G C2558T G11083T C12933T A13308G C14805T C25513T C25517T G26144T

EPI_ISL_449300
 2020-04-24 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4367/2020
 C241T C1059T C3037T T7814C C14408T G18213T A18818G A23403G G25563T

EPI_ISL_450819
 2020-04-24 2020-05-22
 Sweden hCoV-19/Sweden/20-07833/2020
 C241T C1059T C2507T C3037T C14408T A23403G G24368T G25563T

EPI_ISL_450820
 2020-04-24 2020-05-22
 Sweden hCoV-19/Sweden/20-07847/2020
 C241T C1059T C3037T C10626T C14408T A23403G G24368T G25563T

EPI_ISL_450823
 2020-04-24 2020-05-22
 Sweden hCoV-19/Sweden/20-07919/2020
 C241T C3037T C14408T G23311T A23403G GGG28881AAC

EPI_ISL_451215
 2020-04-24 2020-05-24
 United States hCoV-19/USA/LA-EVTL054/2020
 C241T C1059T C3037T G12079A C14408T CG21304AA A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451221
 2020-04-24 2020-05-24
 United States hCoV-19/USA/LA-EVTL060/2020
 C241T C1059T C3037T G12079A C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_452240
 2020-04-24 2020-05-27
 Sweden hCoV-19/Sweden/20-07921/2020
 C241T C1059T C3037T C14408T G17427T A23403G G25563T A27020G

EPI_ISL_452241
 2020-04-24 2020-05-27
 Sweden hCoV-19/Sweden/20-14014/2020
 C241T AAGTCATTT686- C1059T C3037T C7600T G13126T C14408T A21137G A23403G G24368T G25563T

EPI_ISL_453544
 2020-04-24 2020-05-27
 United Kingdom hCoV-19/England/NORT-291AD7/2020
 C241T C3037T G8042A G10097A G10642T C14408T C16616T A23403G C23731T C25714T G28580T GGG28881AAC G29179T

EPI_ISL_453563
 2020-04-24 2020-05-27
 United Kingdom hCoV-19/England/NORW-E8EF5/2020
 AT1- C241T C2940T C3037T C14408T G18677T G19735K A23403G C27874T

EPI_ISL_453566
 2020-04-24 2020-05-27
 United Kingdom hCoV-19/England/NORW-E8F4D/2020
 ATT1- C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_453571
 2020-04-24 2020-05-27
 United Kingdom hCoV-19/England/NORW-E8FB6/2020
 ATTAAA1- C241T A2775G C2940T C3037T C5672T C14408T C21648T A23403G

EPI_ISL_453574
 2020-04-24 2020-05-27
 United Kingdom hCoV-19/England/NORW-E901C/2020
 A1- C241T C3037T C14408T G21608K G22992A A23403G GGG28881AAC C29635Y

EPI_ISL_453577
 2020-04-24 2020-05-27
 United Kingdom hCoV-19/England/NORW-E9049/2020
 ATTAA1- C3540T C4755T G11083T C14805T T17247C G26144T

EPI_ISL_454197
 2020-04-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGT1- C241T C2416T C3037T G8371T G11083T C14408T A23403G G25563T C29144T CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_454198
 2020-04-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T G8371T G11083T C14408T A23403G G25563T C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454199
 2020-04-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T G8371T G11083T C14408T A23403G G25563T C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454200
 2020-04-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T G8371T G11083T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454304
 2020-04-24 2020-05-28
 Portugal hCoV-19/Portugal/PT0581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C936A A1103G C3037T C14408T A23403G C27689T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_456111
 2020-04-24 2020-06-01
 United States hCoV-19/USA/NY-NYUMC839/2020
 C241T T582C C3037T C14408T A23403G G23868T GGG28881AAC

EPI_ISL_456112
 2020-04-24 2020-06-01
 United States hCoV-19/USA/NY-NYUMC840/2020
 C241T C1059T C1593T C3037T C11916T C14408T C18998T C20628T A23403G G25563T G29540A

EPI_ISL_456958
 2020-04-24 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5056/2020
 C241T C3037T T3100G G10097A C14408T C16806T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_456960
 2020-04-24 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5060/2020
 C241T C3037T T3100G G10097A C14408T C16806T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_456961
 2020-04-24 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5066/2020
 C241T C2113T C3037T C7765T C14189T C14408T C17690T C18877T A23403G T24923C G25261T G25563T G29527T

EPI_ISL_456962
 2020-04-24 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5070/2020
 C241T C2113T C3037T C7765T C13968T C14189T C14408T C17690T C18877T A23403G T24923C G25563T

EPI_ISL_457250
 2020-04-24 2020-06-02
 United Kingdom hCoV-19/England/EXET-136B69/2020
 C203T C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457258
 2020-04-24 2020-06-02
 United Kingdom hCoV-19/England/EXET-136C57/2020
 C241T G2164A C3037T T5619C C14408T A23403G GGG28881AAC

EPI_ISL_457602
 2020-04-24 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C3C50/2020
 C241T C3037T C14408T C18713T A23403G GGG28881AAC

EPI_ISL_457652
 2020-04-24 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CC3DA/2020
 C241T C3037T G10882A C14408T G17278T G18803T C21614T A23403G

EPI_ISL_458147
 2020-04-24 2020-06-03
 Brazil hCoV-19/Brazil/PA164218-IEC/2020
 C241T C3037T A6319G C7926T C14408T A23403G G25088T T26149C C27998T GGG28881AAC

EPI_ISL_460603
 2020-04-24 2020-06-05
 United States hCoV-19/USA/NY-NYUMC838/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A TTTTCCG29581-

EPI_ISL_460773
 2020-04-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G6894T C7851T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460787
 2020-04-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T A17292G C17690T C18877T A23403G G25563T C26165T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461045
 2020-04-24 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6463T C9223T T11638C C14408T A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461140
 2020-04-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10202T C14408T C19269T A23403G A24862G G28851T C29274T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461207
 2020-04-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461210
 2020-04-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTCATGTTA510- C1594T C3037T C11109T C14408T C19269T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461211
 2020-04-24 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A691G C2003T C3037T T11638C C14408T A17300G A23403G GGG28881AAC G29179T C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461298
 2020-04-24 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G C26822T C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461299
 2020-04-24 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A6616G G14028T C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461357
 2020-04-24 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11083T G11596T C13011T C14408T G20568A C23202T A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461358
 2020-04-24 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C13011T C14408T G20568A A23403G A26530G G28378T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461629
 2020-04-24 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3041/2020
 C241T C3037T C7600T C10798A C13862T C14408T G20102T A23403G C28836T

EPI_ISL_461631
 2020-04-24 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3043/2020
 C241T C3037T C14408T G21268T G22708T C22879A A23403G G27390C

EPI_ISL_461637
 2020-04-24 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T T2022C C3037T C14408T A17146T C19955T A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_461639
 2020-04-24 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2529C C3037T G3689A T11660A C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_461641
 2020-04-24 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6673C C14408T G15438T A20268G A23403G C28887T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_461649
 2020-04-24 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5144T C14408T G16741T A20268G A23403G G25305C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_461655
 2020-04-24 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2534A C3037T C14408T A23403G C25925T G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_461657
 2020-04-24 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_461659
 2020-04-24 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G C4927T G11083T C11344T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_461665
 2020-04-24 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C12525T C14408T A23403G C26111T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_461741
 2020-04-24 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5462/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_462319
 2020-04-24 2020-06-08
 Singapore hCoV-19/Singapore/201/2020
 C241T C3037T C8730T T8758W C13730T C14408T C22281Y A23403G G25429T C27416A AAAAAAAAAAAA29892-

EPI_ISL_463341 MT642308
 2020-04-24 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S851/2020
 ATTAAAGGTT1- C8782T G11417T G15406A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463342 MT642074
 2020-04-24 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C222T C2040T C4456T A6693G C8782T C14877T C17747T A17858G C18060T T27228A TTG27775CGA T28144C A29188T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_463343
 2020-04-24 2020-06-10
 United States hCoV-19/USA/WA-S853/2020
 ATTAAAGGTTTATACC1- C222T C4456T A6693G C8782T C14877T C17747T A17858G C18060T T27228A T27772A TTG27775CGA T28144C A29188T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_463346 MT642089
 2020-04-24 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S856/2020
 ATTAAAGGTTTATAC1- C222T C4456T A6693G C8782T C14877T A17858G C18060T T27228A TTG27775CGA T28144C A29188T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_463348 MT642346
 2020-04-24 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S858/2020
 ATTAAAGG1- G1401A C8782T T13438C C15960T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463350 MT642111
 2020-04-24 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S860/2020
 AT1- C241T C3037T C4886T G11083T C14408T C16178T T19839C A23403G A23756G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463356 MT642120
 2020-04-24 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S866/2020
 ATT1- C241T C1059T C3037T C8841T C14408T G14500T A23403G G25563T C29466T G29553A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463357 MT642247
 2020-04-24 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S867/2020
 AT1- C241T C1059T C3037T C8595T C14408T C23202T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463360 MT642243
 2020-04-24 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S870/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C8595T C14408T C23202T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463362 MT642163
 2020-04-24 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S872/2020
 AT1- C4456T A6693G C8782T C14877T C17747T A17858G C18060T T27228A T28144C A29188T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463385 MT642230
 2020-04-24 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S895/2020
 AT1- C241T T833C C1059T C3037T C14408T C17163T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463408 MT642148
 2020-04-24 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S918/2020
 AT1- C241T C1059T C3037T C12880T C14408T A20475G C21575T A23403G G25563T C26013T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463415 MT642261
 2020-04-24 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S925/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C8595T C14408T C23202T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_464054
 2020-04-24 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0088/2020
 C241T C1059T C3037T C6578T C14408T A23403G C23709T G25563T G28368A

EPI_ISL_464062
 2020-04-24 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0074/2020
 C241T C313T C3037T T9157C C14408T C14724T A23403G GGG28881AAC G29781T

EPI_ISL_467353
 2020-04-24 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G T26286C T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467354
 2020-04-24 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G1264T C3037T C14408T A16704G A20268G A23403G C25460T GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467355
 2020-04-24 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2226A C3037T A9737G C14408T G19858C C21812T C23029T A23403G T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_467356
 2020-04-24 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2682/2020
 ATTAAAGGTTTATACCTTCCC1- C241T G1782A C3037T G11083T C14408T A23403G T24376G G25088T GGG28881AAC GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467357
 2020-04-24 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2683/2020
 ATTAAAGGTT1- C241T C2701T C3037T C14408T A15856G A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467358
 2020-04-24 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2696/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467359
 2020-04-24 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2717/2020
 AT1- C241T C1684T C3037T C14408T G15093A C22993T A23403G G25088T GGG28881AAC GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467376
 2020-04-24 2020-06-13
 Indonesia hCoV-19/Indonesia/JKT-EIJK07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- G25323T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_467803 MT680237
 2020-04-24 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0409/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_467804 MT680238
 2020-04-24 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0410/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T G20991T A23403G G25563T C25585T C29738T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_469574
 2020-04-24 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174T C241T C3037T G5572T G12202T C14408T T16521C C17249T G17722T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469580
 2020-04-24 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1541T C3037T C3096T C12459T T12523C C14408T A23403G C26333T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469610
 2020-04-24 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469614
 2020-04-24 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C2706T T3070C T3466C A7025G C7203T C9724T -11075TTT G11083T C14805T G26144T C27684T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469624
 2020-04-24 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7092C G10097A C14408T C16997T A23403G C23731T G28580T C28687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469655
 2020-04-24 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12722A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TGTTATG514- C2416T C3037T G8371T C14408T C14688T A23148T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469657
 2020-04-24 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1271A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469733
 2020-04-24 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T C12459T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469735
 2020-04-24 2020-06-18
 United Kingdom hCoV-19/England/BRIS-1271B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T C12459T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469767
 2020-04-24 2020-06-18
 United Kingdom hCoV-19/England/BRIS-127336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T23281C A23403G C25427T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471194
 2020-04-24 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471196
 2020-04-24 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G509A C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471197
 2020-04-24 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471229
 2020-04-24 2020-06-19
 United States hCoV-19/USA/WI-WSLH-200064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T C1059T C1758T C3037T C14408T C18568T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471807
 2020-04-24 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20786/2020
 A187G G213T C241T C3037T C14408T A23403G C25916Y C29784T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_471809
 2020-04-24 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20788/2020
 C241T C3037T C14408T A23403G C25665Y G28325T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_471913
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/England/EXET-136CDF/2020
 C241T C3037T G3354A G4504A G6364T G11801A C14408T T16671C T19839C A23403G G25552T G26155T GGG28881AAC

EPI_ISL_471941
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/England/EXET-136FB8/2020
 C835T T9352C G11083T C14805T C19145T G26144T G27201T

EPI_ISL_472009
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F74D/2020
 C241T C3037T T3100G G10097A T12628C C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_472011
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F76B/2020
 C241T C3037T C3768T C6539T G10097A C14408T C14708T C17977T A20447G A23403G C23731T G28580T GGG28881AAC

EPI_ISL_472015
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F7A7/2020
 C241T C3037T G10097A C14408T T17895C A23403G C23731T GGG28881AAC

EPI_ISL_472886
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160049/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C6026T G11801A C14408T T19839C A23403G G25552T AG28877TC GGG28881AAC

EPI_ISL_472988
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1608AB/2020
 C241T C3037T T4186C G11801A C14408T T19839C A23403G G25552T C27641T GGG28881AAC A29526T

EPI_ISL_473285
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163389/2020
 A1- C241T C3037T T4186C G11801A C14408T T19839C A23403G G25552T C27641T GGG28881AAC A29526T

EPI_ISL_473300
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163486/2020
 ATT1- C241T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_473965
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163592/2020
 C241T ATG518- C3037T C6406T T9643C C14408T G19999K A23403G GGG28881AAC G29777T A29903-

EPI_ISL_474069
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163CE8/2020
 AT1- C241T C3037T T4186C G11801A C14408T T19839C A23403G G25552T C27641T GGG28881AAC A29526T

EPI_ISL_474098
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163EC4/2020
 C241T C1059T C3037T G6337K C14408T G23270T A23403G G25563T

EPI_ISL_474103
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163F2B/2020
 ATTAAAGG1- C241T C3037T C4296T C14408T G19677T A23403G GGG28881AAC C29272Y

EPI_ISL_475269
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0C8B/2020
 C241T C3037T C14408T A23403G G24620T GGG28881AAC C29420T

EPI_ISL_475272
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0CB8/2020
 C241T C3037T C14408T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_475273
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0CD6/2020
 C241T C3037T C14408T A20268G TTT21980- A23403G

EPI_ISL_475274
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0CE5/2020
 C241T C3037T C6968T C14408T A23403G GGG28881AAC

EPI_ISL_475302
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0EEF/2020
 C241T C3037T C14408T C16289T T17568C A23403G G25429T C25433T

EPI_ISL_475316
 2020-04-24 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0FCE/2020
 C241T A1461G A3003T C3037T C5730T C7231T C14408T G19542T A23403G G24328A GGG28881AAC

EPI_ISL_476120 LR824517 LR861084
 2020-04-24 2020-06-25
 Switzerland 140073
 C241T C2434T C3037T C14408T A19298W A20268G T22470W A23403G C29144Y

EPI_ISL_476121 LR824516 LR861075
 2020-04-24 2020-06-25
 Switzerland 140074
 C241T C2434T C3037T C14408T A19298W A19548R A20268G C22347S A22351M A22500M T22510K A23403G C25626Y G26167K G26428K

EPI_ISL_476122 LR824525 LR861085
 2020-04-24 2020-06-25
 Switzerland 140075
 C241T C3037T A5257W C7834T C14408T C15324T A19298W T19332Y C22347V A23403G T23489C

EPI_ISL_479017
 2020-04-24 2020-06-30
 United Kingdom hCoV-19/England/OXON-B148A/2020
 ATG1605- C6195T T8932C C10702T A15891G G23426C C28290T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_479046
 2020-04-24 2020-06-30
 United Kingdom hCoV-19/England/OXON-B17EB/2020
 C241T C3037T C6541T C14408T C15324T G23126T A23403G C25433T C29546T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_479047
 2020-04-24 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1806/2020
 C241T C3037T G3231T C6543T G10097A C14408T A23403G C23731T G28580T GGG28881AAC AAAAAAAA29896-

EPI_ISL_479071
 2020-04-24 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1AE2/2020
 C241T G1729A C3037T C14408T C19488T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_479224
 2020-04-24 2020-06-30
 United Kingdom hCoV-19/England/SHEF-C7032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21784C A23403G C24897T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479248
 2020-04-24 2020-06-30
 United Kingdom hCoV-19/England/SHEF-CB64B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2536T C3037T C14408T C16260T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481221
 2020-04-24 2020-07-02
 Belgium hCoV-19/Belgium/UGent-124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C1059T C3037T C14408T A23403G C25521T G25563T A25984C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481259
 2020-04-24 2020-07-03
 Japan hCoV-19/Japan/NGS-CD-235/2020
 AT1- C241T C3037T C3373A G6660A C11195T C14408T A23403G G25437T GGG28881AAC

EPI_ISL_481260
 2020-04-24 2020-07-03
 Japan hCoV-19/Japan/NGS-CD-292/2020
 AT1- C241T C3037T C3373A C11195T C14408T C16887T A23403G C23604A G25437T C26509T GGG28881AAC

EPI_ISL_481261
 2020-04-24 2020-07-03
 Japan hCoV-19/Japan/NGS-CD-361/2020
 ATTAA1- C241T C3037T C3373A C14408T A23403G C23604A G25437T GGG28881AAC

EPI_ISL_481263
 2020-04-24 2020-07-03
 Japan hCoV-19/Japan/NGS-CD-365/2020
 AT1- C241T C3037T C3373A C11195T C14408T A23403G G25437T C27416T G27667T GGG28881AAC

EPI_ISL_481772
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CEB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1670T C3037T G7743T C14408T C14471A A23403G A26162G T28046C GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_481801
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CF00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481807
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CF4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481812
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CF1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T G28221T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_481815
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CEE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T A23403G G23593K C25528T G25970T G26918T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481822
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CE4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C13011T C14408T A23403G C23731T G28580T GGG28881AAC C29034Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481824
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CDE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25721T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481886
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CE21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471G C3037T C14408T A22893R A23403G C23997T C28369T C28512T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481911
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CE8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2508T C3037T A11782G C14408T G22203T A23403G G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481914
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CF2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G26173T G28077T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481933
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CE9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1422G C3037T C5700T C8123T G11221T C14408T C19170T G19509A A23403G C27131T G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481939
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CEA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13617T C14318T C14408T A23403G C26947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481942
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CDCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5629A C14408T T19839C A23403G G25552T C25714T GGG28881AAC C29061T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482055
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-FF268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C10377T C14408T C15933T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482165
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/LOND-D6865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8547G C14408T A23403G C26681T C27804T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482186
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/LOND-D67B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482200
 2020-04-24 2020-07-03
 United Kingdom hCoV-19/England/LOND-D681A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T G11842T C14408T A23403G GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482377
 2020-04-24 2020-07-03
 United States hCoV-19/USA/OR-PROV-109/2020
 C241T C313T C3037T C11563T C14408T C18877T C21058T A23403G G25563T G27613T C27945T

EPI_ISL_482378
 2020-04-24 2020-07-03
 United States hCoV-19/USA/OR-PROV-110/2020
 G208T C241T C1059T C3037T T3312C A10323G C14408T C22949T A23403G G25563T

EPI_ISL_483212
 2020-04-24 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0541-SAN/2020
 ATTA1- C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_483291
 2020-04-24 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0671-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_483473
 2020-04-24 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1029-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1096G C3037T C14408T G14874T C18877T A23403G G25563T

EPI_ISL_484392
 2020-04-24 2020-07-08
 United Kingdom hCoV-19/England/NOTT-112547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20283T A23403G T28098C C28411T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484401
 2020-04-24 2020-07-08
 United Kingdom hCoV-19/England/NOTT-1125DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3293T G5917A C6312A C8660T C10626T A10948G G12917A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485052
 2020-04-24 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26492496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C10954T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485054
 2020-04-24 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26492498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485056
 2020-04-24 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26492500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8950T C14408T C17444A A23403G G25563T G26834T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485892
 2020-04-24 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26629191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T AAGTCATTT686- C1059T C3037T G4148T C10188T C14408T A23403G C24023T T24982C G25563T C27964T A29558G

EPI_ISL_486139 MT750348
 2020-04-24 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1823/2020
 AT1- C241T C3037T C3738T C14408T T15669C A20268G A22171G A23403G G29734C AAA29901-

EPI_ISL_486141
 2020-04-24 2020-07-10
 United States hCoV-19/USA/CA-CZB-1825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T T3877K A4478R C14408T T15669C A20268G A23122R A23403G T25902W T25908W G25913S G29734C

EPI_ISL_486142 MT750350
 2020-04-24 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1826/2020
 ATTA1- C241T C3037T G11083T C14408T T15669C A20268G A22904M A23122R A23403G C26636T G28857T G29734C

EPI_ISL_486143 MT750351
 2020-04-24 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2106T C3037T C14408T T15669C A20268G A23122R A23403G T25902W T25908W G25913S G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486144 MT750352
 2020-04-24 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1828/2020
 AT1- C241T C3037T C14408T T15669C A20268G A23403G G29734C T29867Y

EPI_ISL_486145 MT750353
 2020-04-24 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1829/2020
 C241T C3037T C14408T T15669C A20268G A23122R A23403G T25902W T25908W G25913S G29734C

EPI_ISL_486146 MT750354
 2020-04-24 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1830/2020
 ATTA1- C241T C3037T C3738T C14408T T15669C A20268G A23403G C23855A G29734C

EPI_ISL_486147 MT750355
 2020-04-24 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1832/2020
 ATTAAAGG1- C241T C3037T C3738T C14408T T15669C A20268G C21789T A23122R A23403G T25902W T25908W G25913S G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867V

EPI_ISL_486148 MT750356
 2020-04-24 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1833/2020
 ATTA1- C241T C3037T C11471T C14408T T15669C A20268G A23403G G29734C

EPI_ISL_486149 MT750357
 2020-04-24 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1835/2020
 ATTAAAGGTT1- C241T C3037T C14408T T15669C A20268G A23122R A23403G T25902W T25908W G25913S G29734C

EPI_ISL_486155 MT750363
 2020-04-24 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1842/2020
 ATT1- C241T C1059T C3037T C3042T C9967T C11747T C12473T C12738Y C14408T A23122R A23403G G25563T C26781T C27964T

EPI_ISL_486156 MT750364
 2020-04-24 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C379A C1059T C2110T C3037T C14408T C21707T A23122R A23403G G25563T T25902W T25908W G25913S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486217
 2020-04-24 2020-07-10
 United States hCoV-19/USA/CA-CZB-1928/2020
 ATTA1- C241T C3037T C14408T T15669C A20268G A23122R A23403G T25902W T25908W G25913S G29734C

EPI_ISL_486307 MT750471
 2020-04-24 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2064/2020
 A1- C241T C3037T C8327T C14408T A23122R A23403G C24442T A24862G G25429T T25902W T25908W G25913S A29903-

EPI_ISL_487099
 2020-04-24 2020-07-13
 Nigeria hCoV-19/Nigeria/OY094-CV57/2020
 ATTAAAGG1- C21T C241T C3037T C5622A C14408T A23403G G25471T GGG28881AAC C29870A

EPI_ISL_487212 MT755593
 2020-04-24 2020-07-13
 United States SARS-CoV-2/human/USA/UT-02563/2020
 C241T C1059T G1738T C3037T A7870G C14408T G17944T C18204T A23403G G25563T A27446G C27964T C29870A

EPI_ISL_487215 MT755594
 2020-04-24 2020-07-13
 United States SARS-CoV-2/human/USA/UT-02566/2020
 ATTA1- C241T T833C C1059T C3037T C6541Y C6706T C14408T A22320G A23403G G25563T C27964T

EPI_ISL_487223 MT755599
 2020-04-24 2020-07-13
 United States SARS-CoV-2/human/USA/UT-02581/2020
 C241T C3037T C5184T C14408T A23403G C26256T C29668T

EPI_ISL_487649
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T C14408T G15202T C16289T G20580T A23403G G23426T G25429T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487739
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C3935G C4084T A7468G T12597C C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487761
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T C3935G A7468G C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487844
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3881G C14408T C19572T A23403G C25350T C25688T C25782T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487859
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB4330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3881G C14408T C19572T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487900
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G C8809T G10097A C14408T C16806T A23403G C23731T G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487953
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5869T T13717A C14408T C15540T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487997
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T A7468G C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488000
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C13968T C14189T C14408T C17690T C17750T C18877T A23403G T24923C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488018
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-29741F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C2644T C3037T C14408T A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488060
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-297C62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C3037T C8334T A10194C C14408T A23403G AG28877WS GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488068
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-297D14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12503C C14408T G18651K A20465R G21157A A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488085
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-297D23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C3037T C10448T C14408T A23403G GGG28881AAC G29628T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488093
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-297D41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C3037T C14408T A20465R G21157A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488101
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-297B1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488106
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-297D32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3250T C6651T C8782T C21575T C26088T G27670T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488107
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-297DBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22346K A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488114
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-297A59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C7056T C14408T A15187G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488129
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-297B83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25494T GGG28881AAC T28888C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488136
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-29700C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5144T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488154
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/NORT-297BA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488206
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EBFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A873G C3037T T3877A G7038A C14408T A23403G C28732T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488259
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EBEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488316
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C5806T C11195T C14408T G23401T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488360
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EB64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5817T C14408T C21952T A23403G C25810T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488379
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EBCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G11083K C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488398
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18859T G21624T T22325C A23403G GGG28881AAC C29095Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488415
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EB73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174T C241T C3037T G12202T C14408T C17249T G17722T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488431
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EAEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488863
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/WSFT-25C18EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_489172
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FD0CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7929C C11824T C14408T C21707T G23120K A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489319
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FCED0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18904T A23403G G25606T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489334
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FCEFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18904T A23403G G25606T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489361
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FD18B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5719C G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489367
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FD0E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10594T C14408T A17342G A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489505
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/CAMB-1ACE74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1437T C3037T T13006C C14408T A23403G A24070T G25563T C25688T C27945T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489575
 2020-04-24 2020-07-14
 United Kingdom hCoV-19/England/CAMB-1ACF80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T G3433T C11379T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489785 MT757071
 2020-04-24 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0376/2020
 A1- T148A C241T C1059T C3037T T5185C C5884T C13487T C14408T G15543T C18888T C22858T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_489786 MT757072
 2020-04-24 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0377/2020
 C241T C1059T C3037T C14408T A23403G G25471C G25563T G26065T C27297T G29734T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489787 MT757073
 2020-04-24 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0378/2020
 ATTA1- C241T G680A C2416T C3037T C11195T C14408T G15202T C22444T A23403G G25563T C26228T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489790 MT757076
 2020-04-24 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0381/2020
 C241T C1059T C3037T A8315G C10188T C12534T C14408T G22484T A23403G T24982C G25563T C27046T C27964T G28321T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_489791 MT757077
 2020-04-24 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0382/2020
 C241T C1059T C3037T A8315G C10188T C12534T C14408T G22484T A23403G T24982C G25563T C27046T C27964T G28321T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_489792 MT757078
 2020-04-24 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0383/2020
 T490A C3177T C8782T T13180C C16084T T18736C C24034T T26729C G28077C T28144C A29700G G29755T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_489793 MT757079
 2020-04-24 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0384/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_489878 EPI_ISL_491074
 2020-04-24 2020-07-14
 Romania hCoV-19/Romania/ROSV_4342/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A12644G C14408T A20268G A23403G C26326T ACACTAGCCATCCTTACTGCGCTTCG26332- A26358T A26433G GTCGCGCATTGGCATGGAAG29224- A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_490519
 2020-04-24 2020-07-15
 United Kingdom hCoV-19/England/NORW-EE24E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1684T C3037T C12915T C14408T G14829T A20268G G21255T A23403G AAAAAAAAAAAA29892-

EPI_ISL_490528
 2020-04-24 2020-07-15
 United Kingdom hCoV-19/England/NORW-EE2E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C12915T C14408T A20268G A23403G AAAAAAAAAAAA29892-

EPI_ISL_490540
 2020-04-24 2020-07-15
 United Kingdom hCoV-19/England/NORW-EE41B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C6539T C12915T C14408T A20268G A23403G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_490541
 2020-04-24 2020-07-15
 United Kingdom hCoV-19/England/NORW-EE42A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C313T C3037T C14408T G14653T C20428T A23403G GGG28881AAC

EPI_ISL_490591
 2020-04-24 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C390E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C710T C3037T G6123A C6445T C14408T C17012T A23403G G27463T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490612
 2020-04-24 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C871E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C G10097A C14408T C15714T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490626
 2020-04-24 2020-07-15
 United Kingdom hCoV-19/England/SHEF-CD421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18803T C20719T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491164
 2020-04-24 2020-07-16
 Oman hCoV-19/Oman/C-5401/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C13694T C14408T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_491165
 2020-04-24 2020-07-16
 Oman hCoV-19/Oman/C-5806/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G10265A C14408T C16293T G20995T A23403G C26858T GGG28881AAC G29440T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_491497
 2020-04-24 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G C20946T A23403G C24718T GG26466TC T26715K G26720R C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491509
 2020-04-24 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6831A C14408T C16289T A23403G G25429T T26715K G26720R G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491523
 2020-04-24 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A23403G A24862G GGG28881AAC TCCTGCTAGAATGGCTGGCAATGGCGGTGA28891- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491571
 2020-04-24 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2940T C3037T C14408T A23403G T27580C TCA28252- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491594
 2020-04-24 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2144T C3037T C14408T C18788T T19839C C20389T A23403G A24862G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491659
 2020-04-24 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C26873T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491678
 2020-04-24 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB2546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C14408T A23403G G24620T A25798G T26715K G26720R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492450
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-29950B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2210T C3037T C12499T C14408T A20297C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492451
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-2994A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C11750Y T13216G C14408T A23403G C23731T C28629Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492455
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-299477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492459
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-2995A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C14408T C14786T A23403G C28313T GGG28881AAC G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492470
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-299459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T C22264T A23403G C23731T C25572A G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492473
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-299635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T C14408T G22093A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492476
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-2995CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T T3783C C14408T G22093A A23403G A23999G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_492479
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-2994FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492480
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-299529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T T27285C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492481
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-299486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T T26715K G26720R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492482
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-299574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492485
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-2994C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C10789Y C14408T C14786T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492486
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-299653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T AAGTCAGAGGACGCGCAGGGAATGGATAATCTTGCCTGCGAAGATC6350- C14408T A16169G C19170T G19509A A23403G C25517T A28154T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492488
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-299565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T T3783C C14408T G22093A A23403G A23999G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492489
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-299495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T C21304T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492491
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-29944A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T C14408T G22093A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492844
 2020-04-24 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T C6336T C8637T C14408T A23403G C26801T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493487
 2020-04-24 2020-07-21
 United Kingdom hCoV-19/England/NORT-2993E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C11195T C11916T C14408T A23403G T25180C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493584
 2020-04-24 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112ADF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7765T G10097A C10189T C14408T C18267T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494430
 2020-04-24 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_494431
 2020-04-24 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C3619T C9438T C14408T A20268G A23403G C28854T

EPI_ISL_494432
 2020-04-24 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494433
 2020-04-24 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1201/2020
 C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_494434
 2020-04-24 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T C1059T C3037T TG6007AC G6446A C10681T C14408T G17014T A23403G G25563T

EPI_ISL_494435
 2020-04-24 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1203/2020
 C241T A1386G C3037T C10156T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494436
 2020-04-24 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1204/2020
 ATTAAAGGTTTATACC1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_494437
 2020-04-24 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_494442
 2020-04-24 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1214/2020
 ATTAAAGGT1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_494443
 2020-04-24 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494698
 2020-04-24 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_494700
 2020-04-24 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_494705
 2020-04-24 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_496358
 2020-04-24 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T T17928C A20268G C22000T A23403G C28854T

EPI_ISL_498236
 2020-04-24 2020-07-27
 Senegal hCoV-19/Senegal/9068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1684T C3037T T13006C C14408T A23403G G25563T C25688T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_498713 MT806774
 2020-04-24 2020-07-27
 United States SARS-CoV-2/human/USA/GA-QDX-232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3608T C14408T G18782T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500859 MT911824
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0705/2020
 AT1- A38R C241T C1059T C3037T C14408T A23403G G25563T C26151T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_500952
 2020-04-24 2020-07-30
 United Kingdom hCoV-19/England/201790215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C7488A C14408T A23403G A25105G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_501154
 2020-04-24 2020-07-30
 United States hCoV-19/USA/WA-UW-8046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C1960T C3037T G12892T C14408T A15426G C16362T C17690T C18029T C19029T C19172T A23403G G25563T T29410C G29553A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_507041
 2020-04-24 2020-08-03
 United Kingdom hCoV-19/England/LOND-124CD48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_507042
 2020-04-24 2020-08-03
 United Kingdom hCoV-19/England/LOND-124CD57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_507227
 2020-04-24 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII10219S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507295
 2020-04-24 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII9304V/2020
 A1- C241T C3037T C14408T A20268G A23403G C26455T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508345
 2020-04-24 2020-08-04
 India hCoV-19/India/IK16/2020
 A4- C241T C3037T C14408T C21707T A23403G G29868A

EPI_ISL_508346
 2020-04-24 2020-08-04
 India hCoV-19/India/IK17/2020
 AT1- C241T C1968T C3037T -11075TTT C14408T T22219C A23403G GTT26155- G29868A

EPI_ISL_508347
 2020-04-24 2020-08-04
 India hCoV-19/India/IK18/2020
 C241T C3037T C14408T A23403G G29868A

EPI_ISL_508348
 2020-04-24 2020-08-04
 India hCoV-19/India/IK19/2020
 A4G C241T C2388T C3037T C9430T C14408T A23403G C26456T G29868A

EPI_ISL_509690 MT844035
 2020-04-24 2020-08-05
 United States SARS-CoV-2/human/USA/UT-CDC-9749/2020
 C241T C3037T C5184T C14408T A23403G C26256T C29668T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_511139
 2020-04-24 2020-08-07
 Portugal hCoV-19/Portugal/PT0880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T9477A T13638C G14500T C14805T A25921G G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512233
 2020-04-24 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T

EPI_ISL_512640
 2020-04-24 2020-08-11
 Ukraine hCoV-19/Ukraine/203100361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G61T C241T C3037T C5339T A9900C C12733A C14408T C21812T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_513132
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH346/2020
 C241T C3037T T7386C C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513133
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH347/2020
 C241T C3037T T7386C C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513143
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH378/2020
 C241T G1495T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C27864A C28854T

EPI_ISL_513144
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH380/2020
 C241T C1549T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513145
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH384/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513146
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH387/2020
 C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T

EPI_ISL_513148
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH393/2020
 C241T C3037T T7292C C14408T C18877T A23403G G25563T C26735T G29527T

EPI_ISL_513149
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH396/2020
 C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513150
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH397/2020
 C241T C3037T C14408T G15193A C18877T A23403G G25563T C26735T

EPI_ISL_513151
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH398/2020
 C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513153
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH404/2020
 C241T C3037T G6056T G8131T C14408T C18877T G20991T A23403G G25563T C26735T

EPI_ISL_513239
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH769/2020
 C241T C3037T C8782T C14408T A17715G C18877T A23403G G25563T C26735T -29867ACACGAGCAGCCTC

EPI_ISL_513248
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH779/2020
 C8240T C8782T G22468T T28144C G28878A G29742A

EPI_ISL_513249
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH781/2020
 C241T C3037T C9924T C10582T C14408T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513250
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH782/2020
 C241T C3037T T3095C C14408T G25563T C26735T

EPI_ISL_513251
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH783/2020
 C241T C3037T C10954T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513252
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH784/2020
 C241T C3037T T3095C C14408T G25563T C26735T

EPI_ISL_513253
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH785/2020
 C241T C3037T C10954T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513254
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH786/2020
 C241T C3037T T7250C C8782T C14408T C18877T A23403G C26735T

EPI_ISL_513255
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH794/2020
 C241T -2883GTGTTGTGGCAGATGCTGTCGTGTTGTGGCAGATGCTGTCGTGTTGTGGCAGATGCTGTCGTGTTGTGGCAGATGCTGTCGTGTTGTGGCAGATGCTGTCGTGTTGCATCAGAGGCTGCTC C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513257
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH802/2020
 C241T C3037T G5037A C8782T C14408T A23403G G25563T C26735T

EPI_ISL_513258
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH808/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513259
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH809/2020
 C241T C3037T C14408T A23403G G25563T C26735T

EPI_ISL_513260
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH810/2020
 C241T C3037T C8782T C14408T A23403G G25563T C26735T

EPI_ISL_513261
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH812/2020
 C241T C3037T C14408T A23403G G25563T A25712T C26735T

EPI_ISL_513262
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH813/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513263
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH814/2020
 C241T T2092C C3037T C7989T C11124T C14408T C17410T C24912T G25563T C26735T

EPI_ISL_513264
 2020-04-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MAKKAH815/2020
 C241T T2092C C3037T C8782T C14408T A23403G G25563T C26735T

EPI_ISL_513265
 2020-04-24 2020-08-12
 United States hCoV-19/USA/FL-9F97/2020
 ATTAAAGGTTT1- C21T C241T C1059T C3037T C14408T G16189A C17738T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_514083
 2020-04-24 2020-08-14
 United States hCoV-19/USA/UN-CDC-7618/2020
 C241T C3037T C12973Y C14408T A23403G T23599C G28361C GGG28881AAC G29777K G29795K AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514084
 2020-04-24 2020-08-14
 United States hCoV-19/USA/UN-CDC-7619/2020
 C241T C3037T A7929G G13348T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514085
 2020-04-24 2020-08-14
 United States hCoV-19/USA/UN-CDC-7625/2020
 C241T C3037T G6622R G7667S A7929G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514086
 2020-04-24 2020-08-14
 United States hCoV-19/USA/UN-CDC-7636/2020
 C241T C3037T C14408T C16650M A23403G C27858Y GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514087
 2020-04-24 2020-08-14
 United States hCoV-19/USA/UN-CDC-7645/2020
 C241T C1190Y C3037T A7929G C14408T G18505R A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514088
 2020-04-24 2020-08-14
 United States hCoV-19/USA/UN-CDC-7651/2020
 C241T C3037T A7929G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514089
 2020-04-24 2020-08-14
 United States hCoV-19/USA/UN-CDC-7652/2020
 C241T C3037T G5580S A6423R A7929G A11975C G13571K C14408T C14645T C15237Y G16858K G18505R T22270Y TT22274WK C23373Y A23403G C26607Y G28812K GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514090
 2020-04-24 2020-08-14
 United States hCoV-19/USA/UN-CDC-7653/2020
 C241T C3037T C9808T C14408T A23403G G28817T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514091
 2020-04-24 2020-08-14
 United States hCoV-19/USA/UN-CDC-7657/2020
 C241T C3037T A7929G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514092
 2020-04-24 2020-08-14
 United States hCoV-19/USA/UN-CDC-7667/2020
 C241T C3037T G3661T A7929G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514128
 2020-04-24 2020-08-14
 United States hCoV-19/USA/UN-CDC-7650/2020
 C241T C3037T C14408T A15578G A23403G T23599C AAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTT27550- G28361C GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_515392
 2020-04-24 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0121/2020
 ATTAAA1- C241T C379A C1059T C3037T C11020T CC14407TT C20436A C21234A A23403G G25563T

EPI_ISL_518843
 2020-04-24 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-2847/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2751T C3037T G10265A C14408T C16293T A23403G C25452T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518844
 2020-04-24 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-2876/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A T11337C C14408T C16293T A23403G C25452T GGG28881AAC ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833C

EPI_ISL_518845
 2020-04-24 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-2911/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T G1018A C2751T C3037T G10265A C14408T C16293T A23403G C25452T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518846
 2020-04-24 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-2921/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T A23403G C25452T CTTGCTAGTTACACTAGCCATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTG26322- GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_518847
 2020-04-24 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-2932/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T G10265A C14408T C16293T A23403G C25452T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_518848
 2020-04-24 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-2937/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C6312A G11083T C13730T G20632T C23929T GTTACACTAGCCATCCTTACTGCGC26329A T26354G C26356T C28311T C29451T GT29841TC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518849
 2020-04-24 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-2944/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T G10265A C14408T C16293T A23403G C25452T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_518850
 2020-04-24 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-2964/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25C C241T C3037T G10265A C14408T C16293T A23403G G25816C C27874T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_520672
 2020-04-24 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L2004035019/2020
 C241T C3037T A6466G C14408T A22374G A23403G G28396A C29774T

EPI_ISL_522680 MT973321
 2020-04-24 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3140T C4540T A4624G C8782T C8880Y T9477A C14805T C21789T G25979T G26062T T28144C C28311T C28657T C28863T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_523238
 2020-04-24 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T C10408T G11596T C14408T C18555T A23403G C25624T A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524788
 2020-04-24 2020-08-28
 Brazil hCoV-19/Brazil/MA-IEC-164827/2020
 C241T C3037T C14408T A23403G A25338C T27299C G27750T GGG28881AAC T29148C

EPI_ISL_526764
 2020-04-24 2020-09-02
 United Kingdom hCoV-19/England/201790456/2020
 ATTAAAGGTTTA1- C241T C3037T GT5743SY C9870T A12458G C14408T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_527343
 2020-04-24 2020-09-03
 United Kingdom hCoV-19/England/20179043204/2020
 ATTA1- C241T C3037T C9870T A12458G C14408T A23403G AAAAAAAAAAAA29892-

EPI_ISL_527344
 2020-04-24 2020-09-03
 United Kingdom hCoV-19/England/20179043304/2020
 A1- C241T C3037T C6636T C9870T A12458G C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527346
 2020-04-24 2020-09-03
 United Kingdom hCoV-19/England/20179043604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9870T A12458G C14408T T23296C A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527347
 2020-04-24 2020-09-03
 United Kingdom hCoV-19/England/20179043704/2020
 ATTAAAGGTT1- C241T C3037T C9870T A12458G C14408T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_527351
 2020-04-24 2020-09-03
 United Kingdom hCoV-19/England/20179044204/2020
 ATTA1- C241T C3037T C9870T A12458G C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527354
 2020-04-24 2020-09-03
 United Kingdom hCoV-19/England/20179044604/2020
 ATTAAAGGTT1- C241T C3037T C9870T A12458G C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527355
 2020-04-24 2020-09-03
 United Kingdom hCoV-19/England/20179044704/2020
 ATTAAAGGT1- C241T C3037T C8247Y C9870T A12061R A12458G A12533R C14408T A23403G T23861Y GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527357
 2020-04-24 2020-09-03
 United Kingdom hCoV-19/England/20182001304/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G C25635T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527675
 2020-04-24 2020-09-04
 United States hCoV-19/USA/MN-CDC-6214/2020
 A2480G C2558T C5850T C10908T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527864
 2020-04-24 2020-09-05
 Brazil hCoV-19/Brazil/SP-299/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C3037T C11095T C11956T C14408T A23403G G24933T T27299C GGG28881AAC T29148C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_527884
 2020-04-24 2020-09-05
 Nigeria hCoV-19/Nigeria/ED46-CV165/2020
 ATTA1- C241T C3037T C3737T A3959G A7678G C14408T G18538A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_528407
 2020-04-24 2020-09-07
 United Kingdom hCoV-19/England/20178059804/2020
 ATTAAAGGT1- C241T C3037T C14408T C16848T G22103C A23403G GGG28881AAC G29711T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_528432
 2020-04-24 2020-09-07
 United Kingdom hCoV-19/England/20179042804/2020
 ATTAAAGGTT1- C241T C3037T C9870T A12458G C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_528435
 2020-04-24 2020-09-07
 United Kingdom hCoV-19/England/20179045004/2020
 A1- C241T C3037T C3411Y C9870T A12458G C14408T A23403G C27196Y GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_528713
 2020-04-24 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/H18/2020
 C241T C3037T G5924A C14408T T21775G A23403G GGG28881AAC

EPI_ISL_528720
 2020-04-24 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/H8/2020
 C241T C3037T A6466G C6525T C14408T G17964T G23401T A23403G G28396A

EPI_ISL_528721
 2020-04-24 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/H9/2020
 C241T C3037T G5924A G11299T C14119T C14408T T21775G A23403G GGG28881AAC

EPI_ISL_529923 MT992738
 2020-04-24 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3602T C14408T A23403G G25563T C29247T

EPI_ISL_529926 MT992741
 2020-04-24 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1134/2020
 AT1- C241T C1059T C1191T C3037T C6543T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870T

EPI_ISL_530076
 2020-04-24 2020-09-10
 Spain hCoV-19/Spain/MD-LP79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GGTCATGTTATG509- C3037T C10296T C14408T T17126C T18471C A20268G TTA21991- G23012C A23403G G29779T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530212 MT997734
 2020-04-24 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2878T C3037T G3146A C14408T A23403G G25563T A27821G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_530213 MT997735
 2020-04-24 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1617/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T T22119C A23403G G24368T G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_534322
 2020-04-24 2020-09-13
 Brazil hCoV-19/Brazil/SP-302/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G2534T C3037T C3653T C12053T C14408T T14501C G21305A A23403G G25088T C28253T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_538920
 2020-04-24 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9ABE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539799
 2020-04-24 2020-09-20
 United States hCoV-19/USA/WY-WYPHL-20010244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T A7870G C14408T A23403G G25563T C27964T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_539800
 2020-04-24 2020-09-20
 United States hCoV-19/USA/WY-WYPHL-20010570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T GTCATGTTA510- T582C C1059T C3037T C14408T C15557T A23403G G25563T T25950C

EPI_ISL_541386
 2020-04-24 2020-09-22
 Brazil hCoV-19/Brazil/SE-6567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A6319G C14408T A23403G G24755T G25088T T26149C GGG28881AAC GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_541387
 2020-04-24 2020-09-22
 Brazil hCoV-19/Brazil/SE-6568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C5284T C11916T C14408T A23403G G25563T GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_542528
 2020-04-24 2020-09-23
 United States hCoV-19/USA/TX-HMH-1093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542575
 2020-04-24 2020-09-23
 United States hCoV-19/USA/TX-HMH-1187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542583
 2020-04-24 2020-09-23
 United States hCoV-19/USA/TX-HMH-1200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2848G C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542604
 2020-04-24 2020-09-23
 United States hCoV-19/USA/TX-HMH-1240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542631
 2020-04-24 2020-09-23
 United States hCoV-19/USA/TX-HMH-1291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A15979G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542639
 2020-04-24 2020-09-23
 United States hCoV-19/USA/TX-HMH-1304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G10958T C11514T C14408T G22899T A23403G G25563T C27964T C28093T G28986T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542640
 2020-04-24 2020-09-23
 United States hCoV-19/USA/TX-HMH-1305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T G1661A C2003T C3037T T4579C C10029T C10277T C14408T C18877T A21137G A23403G G25563T C26681T C29274T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542733
 2020-04-24 2020-09-23
 United States hCoV-19/USA/TX-HMH-1458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2388T C3037T C10188T C11572T C14408T G21770T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542752
 2020-04-24 2020-09-23
 United States hCoV-19/USA/TX-HMH-1492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C5526T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545279
 2020-04-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-2386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C16308T C16694T A23403G G25563T A25986T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547479
 2020-04-24 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C3903T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549245 MW040673
 2020-04-24 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1463/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_568955
 2020-04-24 2020-10-02
 France hCoV-19/France/IHU-0743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T C29635T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT810657
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1196-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810658
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1197-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C3619T C9438T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810659
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1200-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810660
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1201-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810661
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1202-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T TG6007AC G6446A C10681T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810662
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1203-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1386G C3037T C10156T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810663
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1204-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810664
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1207-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810669
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1214-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810670
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1217-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810771
 2020-04-24 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1697-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T T17928C A20268G C22000T A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810899
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1628-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810901
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1630-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810906
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1636-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811228
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0541-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811304
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0671-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811480
 2020-04-24 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1029-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1096G C3037T C14408T G14874T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT880884
 2020-04-24 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7619/2020
 C241T C3037T A7929G G13348T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT880885
 2020-04-24 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7651/2020
 C241T C3037T A7929G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT880886
 2020-04-24 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7653/2020
 C241T C3037T C9808T C14408T A23403G G28817T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT880887
 2020-04-24 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7657/2020
 C241T C3037T A7929G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT880888
 2020-04-24 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7667/2020
 C241T C3037T G3661T A7929G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT882320
 2020-04-24 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7618/2020
 C241T C3037T C12973Y C14408T A23403G T23599C G28361C GGG28881AAC G29777K G29795K AAAAAAAAAAAAAAAAAAAAA29883-

MT882321
 2020-04-24 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7625/2020
 C241T C3037T G6622R G7667S A7929G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT882322
 2020-04-24 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7636/2020
 C241T C3037T C14408T C16650M A23403G C27858Y GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT882323
 2020-04-24 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7645/2020
 C241T C1190Y C3037T A7929G C14408T G18505R A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT882324
 2020-04-24 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7650/2020
 C241T C3037T C14408T A15578G A23403G T23599C AAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTT27550- G28361C GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT882325
 2020-04-24 2020-08-13
 United States SARS-CoV-2/human/USA/Navy-CDC-7652/2020
 C241T C3037T G5580S A6423R A7929G A11975C G13571K C14408T C14645T C15237Y G16858K G18505R T22270Y TT22274WK C23373Y A23403G C26607Y G28812K GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT967928
 2020-04-24 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6214/2020
 A2480G C2558T C5850T C10908T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

MW001250
 2020-04-24 2020-09-14
 United States SARS-CoV-2/human/USA/235-NP-OP/2020
 C241T C1059T C3037T C14408T A23403G C23987T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_435550
 2020-04-25 2020-05-05
 United States hCoV-19/USA/LA-EVTL012/2020
 C241T C1059T C3037T A7479G C14408T A23403G G25563T G27667T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435551
 2020-04-25 2020-05-05
 United States hCoV-19/USA/LA-EVTL013/2020
 C241T C1059T C1943T C3037T G13812A C14408T T21391G C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435552
 2020-04-25 2020-05-05
 United States hCoV-19/USA/LA-EVTL014/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T C28567T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435553
 2020-04-25 2020-05-05
 United States hCoV-19/USA/LA-EVTL015/2020
 C241T C1059T C3037T C3045T A12759C C14408T C14786T G20615T A23403G G25563T C27964T C28567T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_435554
 2020-04-25 2020-05-05
 United States hCoV-19/USA/LA-EVTL016/2020
 C241T C1059T C3037T C3045T A12759C C14408T C14786T G20615T A23403G G25563T C27964T C28567T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_436620 MT706433
 2020-04-25 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G13503A T18417C G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436621 MT706434
 2020-04-25 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T809A C1059T A2109G C3037T G5629T C14408T C15450T C16017T C16616T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436623 MT706436
 2020-04-25 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C T889C C1059T C3037T C6120T C6883T C14408T G15138T T23281C A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437081 MT449672
 2020-04-25 2020-05-08
 United States SARS-CoV-2/human/USA/CA-CZB-1081/2020
 C6363T C9979T C23525Y C25692T

EPI_ISL_437571
 2020-04-25 2020-05-11
 United States hCoV-19/USA/CA-SR0233/2020
 C241T C3037T C9430T C14408T G18972T G19969A A20268G A23403G C28854T

EPI_ISL_438170
 2020-04-25 2020-05-12
 United States hCoV-19/USA/WA-S617/2020
 C241T C1059T C3037T C14408T G16489T T16617C A23403G G25563T C26204T

EPI_ISL_438666
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82BAB/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_438667
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-82BBA/2020
 C241T C3037T C14408T A16607G A23403G GGG28881AAC

EPI_ISL_438681
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83481/2020
 C241T G2626A C3037T C14408T C14805T C21691T A23403G GGG28881AAC

EPI_ISL_438696
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83E0B/2020
 C241T C3037T C14408T A23403G C23709T G27281T GGG28881AAC

EPI_ISL_438698
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83E29/2020
 C241T C1170T C3037T C11379T C14408T G21986A A23403G T25556G GGG28881AAC

EPI_ISL_438703
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83E83/2020
 C241T C1684T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC A28990G

EPI_ISL_438704
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83EA1/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26110T

EPI_ISL_438705
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83EB0/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_438707
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83EDE/2020
 C241T G271T C3037T C14408T G22346T A23403G C26622T GGG28881AAC

EPI_ISL_438710
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83F17/2020
 C241T C2937T C3037T T9429C C14408T A20268G A23403G

EPI_ISL_438713
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83F53/2020
 C241T C3037T C11606T C14408T A23403G C25624T C26002A GGG28881AAC C29585T

EPI_ISL_438715
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83F71/2020
 C241T C1059T C1437T C3037T C3393T G6446T T11032G T12779C T13006C C14408T G17122T A23403G G25563T C25688T G26727T A29381C

EPI_ISL_438717
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83FAE/2020
 C241T C3037T C6636T G7675T C14408T T15888C A19407G A23403G C28214A G28703T GGG28881AAC

EPI_ISL_438719
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83FCC/2020
 C241T C3037T C7600T C13730T C14408T A23403G G25429T

EPI_ISL_438720
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83FDB/2020
 C241T C3037T G8612T C14408T A23403G GGG28881AAC G29705T

EPI_ISL_438722
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83FF9/2020
 C241T C3037T C8290T G10262A C12242T C14408T T19839C C22995T A23403G A27669G GGG28881AAC

EPI_ISL_439238
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2605/2020
 C241T C3037T C14408T A20268G A23403G C24054T C28854T C29541T

EPI_ISL_439239
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2606/2020
 G4207A C7423T C21365T G23383A C27925T T28105C C29719T

EPI_ISL_439240
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2607/2020
 G4207A C7423T C21365T G23383A C27925T T28105C C29719T

EPI_ISL_439241
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2608/2020
 C241T C3037T C14408T A20268G A23403G C25002T C28854T

EPI_ISL_439242
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2609/2020
 C7423T C7869T

EPI_ISL_439243
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2614/2020
 C241T C1101T C3037T C14408T A23403G A25798G GGG28881AAC

EPI_ISL_439244
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2620/2020
 C241T C3037T C14408T C18788T T19839C A23403G A24862G GGG28881AAC

EPI_ISL_439245
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2627/2020
 C241T A2725G C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_439246
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2631/2020
 C241T C3037T C14408T C15324T A23403G G27047A G28374A C29171T

EPI_ISL_439247
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2635/2020
 C241T A2725G C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_439248
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2638/2020
 C241T C274T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_439253
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2661/2020
 C241T C3037T C14408T A20268G A23403G A28390G

EPI_ISL_440939
 2020-04-25 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9CC05/2020
 C241T C3037T C14408T G21624T A23403G G25617T GGG28881AAC

EPI_ISL_445244 MT577359
 2020-04-25 2020-05-15
 Bangladesh SARS-CoV-2/human/BGD/akbiomed_01/2020
 ATTAAAGGT1- TA13GG CTTCCCAGGTAACAAA16- GG198AA -G203GA C241T C3037T C14408T A23403G G29794C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_447551 MT481904
 2020-04-25 2020-05-17
 India SARS-CoV-2/human/IND/GBRC89/2020
 C218T C241T C3037T C14408T A14673G A23403G

EPI_ISL_449232
 2020-04-25 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C27427T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449236
 2020-04-25 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G885T C3037T C14408T A21405T A23403G C23701T GGG28881AAC TAATTTTAG29817- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449297
 2020-04-25 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4362/2020
 C241T G520T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_449299
 2020-04-25 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4366/2020
 C241T C3037T C9223T C14408T A23403G

EPI_ISL_452086
 2020-04-25 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-248/2020
 C241T C3037T C7834T C14408T G15906A C21707T C21855T A23403G

EPI_ISL_452088
 2020-04-25 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-250/2020
 C241T C1059T C3037T T8788C C14408T G20887A A23403G G25563T G26951A C28045T

EPI_ISL_452239
 2020-04-25 2020-05-27
 Sweden hCoV-19/Sweden/20-07909/2020
 C241T C1707T C3037T C6539T C14408T A23403G C28310T GGG28881AAC

EPI_ISL_453559
 2020-04-25 2020-05-27
 United Kingdom hCoV-19/England/NORW-E8E13/2020
 AT1- C1314T C1973T G11083T C14805T T17247C G26144T T26278Y

EPI_ISL_453573
 2020-04-25 2020-05-27
 United Kingdom hCoV-19/England/NORW-E900D/2020
 ATTAAAG1- C241T C2940T C3037T C14408T C21648T A23403G G24992A

EPI_ISL_453575
 2020-04-25 2020-05-27
 United Kingdom hCoV-19/England/NORW-E902B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T1592C C3037T C14408T A23403G GGG28881AAC G29777T

EPI_ISL_453579
 2020-04-25 2020-05-27
 United Kingdom hCoV-19/England/NORW-E9067/2020
 ATTA1- C241T C1059T C3037T C9693T G11083T C11916T C14408T A23403G G25563T

EPI_ISL_453580
 2020-04-25 2020-05-27
 United Kingdom hCoV-19/England/NORW-E9085/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C12915T C14408T A20268G A23403G

EPI_ISL_454650 MT533199
 2020-04-25 2020-05-28
 United States SARS-CoV-2/human/USA/VI-CDC-4367/2020
 C241T C1059T C3037T C10301A C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_454795
 2020-04-25 2020-05-29
 Serbia hCoV-19/Serbia/CA3089-04/2020
 C241T C3037T G10265A C14408T A15972G C19718T A23403G T28759C GGG28881AAC

EPI_ISL_456107
 2020-04-25 2020-06-01
 United States hCoV-19/USA/NY-NYUMC834/2020
 C241T C3037T T14104C C14408T C18877T A23403G G25563T

EPI_ISL_456388
 2020-04-25 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2659/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_456390
 2020-04-25 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2917/2020
 C241T T833C C1059T C3037T C14408T A23403G C27964T C29774T

EPI_ISL_456393
 2020-04-25 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2932/2020
 G431A C20270T A29683T

EPI_ISL_456394
 2020-04-25 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR2941/2020
 G431A C20270T A29683T

EPI_ISL_456395
 2020-04-25 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR3003/2020
 C241T C3037T G6476T C14408T A23403G GGG28881AAC

EPI_ISL_456396
 2020-04-25 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR3004/2020
 C241T C3037T G6476T C14408T A23403G GGG28881AAC

EPI_ISL_456397
 2020-04-25 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR3005/2020
 C241T C3037T G6476T C14408T A23403G GGG28881AAC

EPI_ISL_456402
 2020-04-25 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR3045/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_456964
 2020-04-25 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5088/2020
 C241T C2113T C3037T C7765T C13968T C14189T C14408T C17690T C18877T A23403G T24923C G25563T G29477T

EPI_ISL_456965
 2020-04-25 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5090/2020
 ATG1605- C3787T A7468G C9521T C16362T

EPI_ISL_457586
 2020-04-25 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C179D/2020
 C241T C3037T C14408T G22427A A23403G G27441T GGG28881AAC

EPI_ISL_461010
 2020-04-25 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C5055T G5542A C6120T T15665C C21767T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461012
 2020-04-25 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3541C A8128T C11379T A11438G C14408T C22987T A23403G C27046T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461047
 2020-04-25 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T C3037T C5392T C7119T C9223T T11638C C14408T A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461209
 2020-04-25 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8171A C14408T C16887T A23403G T25414C G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461270
 2020-04-25 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G5950T G10097A C13536T C14408T A23403G C23731T G25456T A28305G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461271
 2020-04-25 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C12513T C14408T G18040T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461272
 2020-04-25 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T C21646T A23403G C24865T C26125T A26530G G29554T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461355
 2020-04-25 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461356
 2020-04-25 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6036T C9924T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461669
 2020-04-25 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5234G A12075G C14408T C16289T A23403G G25183A T25222C G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_461670
 2020-04-25 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G11083T C12710T C21789T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_461675
 2020-04-25 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G G11083T C11344T C14805T T17247C T21033C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_461676
 2020-04-25 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_461678
 2020-04-25 2020-06-06
 United Kingdom hCoV-19/Scotland/CVR3105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1938T C3037T C12053T C14408T A23403G G25088T T25496C C27577T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_461742
 2020-04-25 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5464/2020
 C241T C2113T C3037T C7765T C13968T C14189T C14408T C17690T C18877T A23403G T24923C G25563T

EPI_ISL_461744
 2020-04-25 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5469/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_461749
 2020-04-25 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5475/2020
 C3589T G11083T C14805T G26144T G26690T G28842T

EPI_ISL_461751
 2020-04-25 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5478/2020
 C241T C2113T C3037T C7765T C13968T C14189T C14408T C17690T C18877T G20102C A23403G T24923C G25563T

EPI_ISL_461768
 2020-04-25 2020-06-06
 United Kingdom hCoV-19/England/LOND-D6A9C/2020
 C241T C2940T C3037T C14408T C21707T A23403G

EPI_ISL_462320
 2020-04-25 2020-06-08
 Singapore hCoV-19/Singapore/202/2020
 A870G T3289C C6310A C6312A C9532T G11083T C13730T C19524T C23929T C28311T C28758T AAAAAAAAAAAA29892-

EPI_ISL_463409 MT642217
 2020-04-25 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S919/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C4993T C14408T A15593G C16376T A18179G C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463410 MT642185
 2020-04-25 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S920/2020
 ATT1- C683T C1342T C8782T C17747T A17858G C18060T C18264T C24919T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463411 MT642298
 2020-04-25 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S921/2020
 ATTAAAGGTTTATA1- G1401A A3190G C8782T C17747T A17858G C18060T T28144C C29420T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463476 MT642316
 2020-04-25 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S986/2020
 ATTAAAGGTT1- C3311A C8782T G17671T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_464021
 2020-04-25 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0069/2020
 C241T C1059T C2507T C3037T C14408T C16092T A21592G A23403G G25563T G25855C G28368A

EPI_ISL_467360
 2020-04-25 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C5869T G6056A G7756T C14408T TTTGAA20407- G20730T A23403G T24887C T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467364
 2020-04-25 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2777/2020
 ATTAAAGGTT1- C241T C1420T C3037T C14408T A23403G T27299C GGG28881AAC T29148C C29762T GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467378
 2020-04-25 2020-06-13
 United States hCoV-19/USA/NY-NYUMC885/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468243 LR824166 LR860761
 2020-04-25 2020-06-16
 Switzerland 120164
 C241T G2747T C3037T G7393K A9848R C10369Y C14408T A22375W A23403G T24903C C26270T C27046T GGG28881AAC

EPI_ISL_468347 MT628085
 2020-04-25 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1291/2020
 ATT1- C24370T C25692T G29742T

EPI_ISL_468424 MT628158
 2020-04-25 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1464/2020
 AT1- C241T C379A C1059T C3037T T9440A C14408T G17302K A23403G G25012A G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468482
 2020-04-25 2020-06-16
 United States hCoV-19/USA/CA-CZB-1537/2020
 A1- C241T A1189G C3037T G10793T C14408T C18877T A23403G G25563T C25782T G27514T G28028T

EPI_ISL_471396
 2020-04-25 2020-06-20
 Democratic Republic of the Congo hCoV-19/DRC/3842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3245T C6525T C8293T A8651C C14408T T18488C G19872T A23403G T24739C A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471397
 2020-04-25 2020-06-20
 Democratic Republic of the Congo hCoV-19/DRC/3846/2020
 ATTAAAGGT1- C241T C3037T C5093T T6130C A13951G C14408T C15324T G15444T A23403G C23854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_471398
 2020-04-25 2020-06-20
 Democratic Republic of the Congo hCoV-19/DRC/3937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3645G G4510T T5803C C8016T C14408T C15324T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_471400
 2020-04-25 2020-06-20
 Democratic Republic of the Congo hCoV-19/DRC/3947/2020
 ATTAAAGGTTTA1- C241T C3037T A4457G C5907T C12025T C12312T C14408T C15324T A23403G G27758A TT27760AC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_471411
 2020-04-25 2020-06-20
 Democratic Republic of the Congo hCoV-19/DRC/04186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T G11230T T28144C G28167A G28878A G29742A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_471412
 2020-04-25 2020-06-20
 Democratic Republic of the Congo hCoV-19/DRC/04187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C8782T G11230T T28144C G28167A G28878A G29742A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_472010
 2020-04-25 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F75C/2020
 C241T C3037T T3100G G10097A T12628C C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_472851
 2020-04-25 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15FD64/2020
 ATTA1- C241T C1059T C3037T G7675T C10376T G11083T C14408T G18583T T21745C A23403G G24368T G25563T C27610T G29773T

EPI_ISL_473785
 2020-04-25 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB2626/2020
 C241T A2725G C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_473786
 2020-04-25 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB2629/2020
 C241T A2725G C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_473787
 2020-04-25 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB2633/2020
 C241T C3037T C14408T A20268G G22225T A23403G C27970T T29753C

EPI_ISL_473788
 2020-04-25 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB2634/2020
 C241T A2725G C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_473959
 2020-04-25 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3100G G10097A C13584T C14408T A23403G C23731T G25947T GGG28881AAC AAAAAAA29897-

EPI_ISL_473988
 2020-04-25 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A16872G A23403G A23933C C24048Y GGG28881AAC

EPI_ISL_473991
 2020-04-25 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16377E/2020
 ATTAAA1- C241T C3037T T8235C G10097A T10792C C14408T G15327T A23403G C23731T C25096T G28580T GGG28881AAC G29027T

EPI_ISL_474147
 2020-04-25 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164230/2020
 ATTA1- C241T C1348T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_474169
 2020-04-25 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1643B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_474966
 2020-04-25 2020-06-23
 Israel hCoV-19/Israel/CVL-n-11470/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G26217T G29540A

EPI_ISL_474967
 2020-04-25 2020-06-23
 Israel hCoV-19/Israel/CVL-n-11482/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G26217T G29540A

EPI_ISL_474972
 2020-04-25 2020-06-23
 Israel hCoV-19/Israel/CVL-n-11475/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G26217T G29540A

EPI_ISL_474985
 2020-04-25 2020-06-23
 Israel hCoV-19/Israel/CVL-n-11468/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G26217T G28703T C28744T G29540A

EPI_ISL_475017
 2020-04-25 2020-06-23
 Israel hCoV-19/Israel/CVL-n-11594/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_476713
 2020-04-25 2020-06-25
 United States hCoV-19/USA/MN-MDH-1128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_476714
 2020-04-25 2020-06-25
 United States hCoV-19/USA/MN-MDH-1129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_476715
 2020-04-25 2020-06-25
 United States hCoV-19/USA/MN-MDH-1130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_476716
 2020-04-25 2020-06-25
 United States hCoV-19/USA/MN-MDH-1131/2020
 AT1- C241T C539T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_477632 MT679156
 2020-04-25 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0416/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C7195T C14408T G20991T A23403G G25563T C25585T C29870A

EPI_ISL_479042
 2020-04-25 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1763/2020
 A187G C241T C3037T C14408T A23403G C29498G AAAAAAAAAA29894-

EPI_ISL_479048
 2020-04-25 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1824/2020
 C241T C3037T C6723T C14408T A23403G A28483G GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_479091
 2020-04-25 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1DAD/2020
 C241T C3037T C5817T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_479113
 2020-04-25 2020-06-30
 United Kingdom hCoV-19/England/OXON-B20C1/2020
 C241T C3037T C14408T G21624T A23403G GGG28881AAC G29422T AAAAAAAAA29895-

EPI_ISL_479154
 2020-04-25 2020-06-30
 United Kingdom hCoV-19/England/OXON-B254A/2020
 C241T C1710T C2919T C3037T C5817T C14408T A23403G GGG28881AAC

EPI_ISL_479267
 2020-04-25 2020-06-30
 United Kingdom hCoV-19/England/SHEF-D00CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1190T C3037T C10186T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479412
 2020-04-25 2020-06-30
 United Kingdom hCoV-19/Wales/PHWC-165026/2020
 ATTAA1- C241T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_479499
 2020-04-25 2020-06-30
 India hCoV-19/India/NIV-14614/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479500
 2020-04-25 2020-06-30
 India hCoV-19/India/NIV-15115/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C7600T C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480306
 2020-04-25 2020-07-01
 Bulgaria hCoV-19/Bulgaria/34/2020
 C241T C2091T C3037T C5884T C9319T C14408T G22021T A23403G GGG28881AAC

EPI_ISL_480883 MT704050
 2020-04-25 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0232/2020
 AT1- C241T G680A C2416T C3037T C11195T C14408T G15202T C22444T A23403G G25563T C26228T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480884 MT704051
 2020-04-25 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0233/2020
 ATT1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480885 MT704052
 2020-04-25 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0234/2020
 C241T C1059T C3037T A8315G C10188T C12534T C14408T G22484T A23403G T24982C G25563T C27046T C27964T G28321T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_481483 MT786444
 2020-04-25 2020-07-03
 Georgia SARS-CoV-2/human/GEO/Tb-5727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C3037T T5278G C6573T C14408T G17679T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_481779
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T A23403G C25528T C27503Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481782
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CF6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481799
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CF79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C3037T G10097A G11083T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481833
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CF88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C3037T G10097A G11083T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481839
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CFB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4320Y C14408T A23403G GGG28881AAC A29403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481843
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D0DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1909T C3037T C6543Y A13931R C14408T G16647T A23403G G24821K C25904T G29810K CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481845
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CF97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T T1483W C3037T G8179K C9491T G10097A G11083T C14408T A23403G C23731T C27688Y C27752T C28637Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481876
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29013T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481910
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CFF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1701T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481919
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15738Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481920
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G13879A C17004T C20384T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481922
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CFC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G25352K G28580T C28687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481945
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CFD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T G15672T A23403G C23731T G27506T G28580T GGG28881AAC C28892T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481947
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D0B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T G21724T G22468T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481948
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CFA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C3037T G10097A G11083T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481962
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CFE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1701T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481964
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D0C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C14408T A23403G G25563T T27692C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482038
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-FF56F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C19366T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482044
 2020-04-25 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-FF58D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9967T A10323G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482379
 2020-04-25 2020-07-03
 United States hCoV-19/USA/OR-PROV-112/2020
 A4236G G8889A G11071C C11074T G11083T C14805T T25655C G26144T

EPI_ISL_482380
 2020-04-25 2020-07-03
 United States hCoV-19/USA/OR-PROV-113/2020
 A4236G A7799G G11083T C14805T T25655C G26144T G28326C

EPI_ISL_484355
 2020-04-25 2020-07-08
 United Kingdom hCoV-19/England/NOTT-112213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8802T C14408T G17944A A21315T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484374
 2020-04-25 2020-07-08
 United Kingdom hCoV-19/England/NOTT-11235C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7765T G10097A C10189T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485046
 2020-04-25 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26492480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1980A C2334T C3037T C14408T A23403G G23915A G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485874
 2020-04-25 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26492471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T A1669G C3037T A7271G C14408T C15701T A23403G G25563T TTTAGCACTCAA27568- C27964T

EPI_ISL_485876
 2020-04-25 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26492486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T GTTATG515- C1059T G1980A C3037T G8861A C14408T A23403G C24909T G25563T C27964T C29614T CCACGCGGAGTACGATCGAGT29738-

EPI_ISL_486112
 2020-04-25 2020-07-10
 United States hCoV-19/USA/WA-UW-8150/2020
 A1G C36T C241T C1059T C3037T C14408T A23403G G25563T G29553A A29700G TG29867AA C29870A

EPI_ISL_486157 MT750365
 2020-04-25 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G6532T C14408T C18395T G18898T C21772T A23122R A23403G C23536T T25902W T25908W G25913S GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486308
 2020-04-25 2020-07-10
 United States hCoV-19/USA/CA-CZB-2065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C8327T C14220Y C14408T A23122R A23403G C24442T A24862G T25902W T25908W G25913S

EPI_ISL_486309
 2020-04-25 2020-07-10
 United States hCoV-19/USA/CA-CZB-2066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8327T C14408T G21305A A23122R A23403G C24442T A24862G G25429T T25902W T25908W G25913S

EPI_ISL_486398
 2020-04-25 2020-07-10
 India hCoV-19/India/nimh-5297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C1281T C6312A T8022G G11083T C13730T C16092T G16396A G16943T GA23441CC C23929T G25437T C28311T G28946T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486860
 2020-04-25 2020-07-12
 Senegal hCoV-19/Senegal/9615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1625T C3037T C14408T A20268G A23403G C25886T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486861
 2020-04-25 2020-07-12
 Senegal hCoV-19/Senegal/9439/2020
 ATTAAAGGTTTATACCTT1- C241T C313T ATG1605- C3037T G6611T C14408T TTA21991- A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486863
 2020-04-25 2020-07-12
 Senegal hCoV-19/Senegal/9369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C15324T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_488028
 2020-04-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-29743D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A19960W C21575T G23126K A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488046
 2020-04-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-2966B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1367R C3037T G8042A G10097A C14408T G14443S A23403G C23731T G25252T C25714T C28115Y G28580T GGG28881AAC G29041T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488048
 2020-04-25 2020-07-14
 United Kingdom hCoV-19/England/NORT-296771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G C21707T A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488231
 2020-04-25 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EBDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1102T C1441T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488271
 2020-04-25 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EF68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T20286G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488319
 2020-04-25 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EC16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973Y C3037T T5479Y C6330T G10097A C14408T G15672T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488327
 2020-04-25 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12F046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T G4285T C14408T A23403G G25555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488406
 2020-04-25 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12EBA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8861A T9982C C13551T C14408T T15561C A23403G G24368T G25563T C26907A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489320
 2020-04-25 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FD0F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10594T C14408T A17342G A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489321
 2020-04-25 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FD200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5719C C7926T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489351
 2020-04-25 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FD130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G293A C1420T C3037T A11430G C13551T C14408T A23403G C25904T C28708T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489352
 2020-04-25 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FD1A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1174Y C3037T C10156T C14408T T17803G A23403G T26511Y GGG28881AAC G29449T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489487
 2020-04-25 2020-07-14
 United Kingdom hCoV-19/England/CAMB-1AD417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C11195T C14408T C18115Y A23403G A25946G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489879 EPI_ISL_491075
 2020-04-25 2020-07-14
 Romania hCoV-19/Romania/ROSV_4657/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C3045T C14408T C17750T A20268G A23403G T24721C C28045T A29827T G29830T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_489880 EPI_ISL_491076
 2020-04-25 2020-07-14
 Romania hCoV-19/Romania/ROSV_4659/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T A12644G C13170T C14408T A20268G A23403G C25728T C27707T A29827T TGCT29829- CA29838TC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_490611
 2020-04-25 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C8435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3809T T7438C C7564T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491125
 2020-04-25 2020-07-16
 Oman hCoV-19/Oman/C-6175/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C13694T C14408T T18630C A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_491126
 2020-04-25 2020-07-16
 Oman hCoV-19/Oman/C-6324/2020
 TT2GA ATACCTTCC12- C21T GGT23AAC C241T C3037T G10265A C14408T C16293T C19859T A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_491131
 2020-04-25 2020-07-16
 Oman hCoV-19/Oman/B-3123/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G10265A C14408T C16293T G17302T A23403G GGG28881AAC AGGAGAATGA29860- A29886C AAAAAAAAAAA29893-

EPI_ISL_491140
 2020-04-25 2020-07-16
 Oman hCoV-19/Oman/C-5174/2020
 ATTAAAGGTTTATACCTTCCCAG1- G24C C241T C3037T C13694T C14408T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_491142
 2020-04-25 2020-07-16
 Oman hCoV-19/Oman/C-6187/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C13694T C14408T A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_491944
 2020-04-25 2020-07-17
 Ecuador hCoV-19/Ecuador/23890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_493590
 2020-04-25 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112B45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7936T C14408T T17895A A23403G G25186T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494646
 2020-04-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_494699
 2020-04-25 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T G25981T

EPI_ISL_495591
 2020-04-25 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S001130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6726T C14408T C16391T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_496356
 2020-04-25 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1695/2020
 A1- C241T C3037T C14408T A19385C A20268G A23403G C28854T C29167T

EPI_ISL_499807
 2020-04-25 2020-07-28
 United Kingdom hCoV-19/England/NORT-2A0413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T G11083T C14805T G26144T C26936T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500860 MT911825
 2020-04-25 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T4045A C10319T C14408T T19473C A23403G T24472C G25563T C27964T G29868A C29870A

EPI_ISL_500862 MT911827
 2020-04-25 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C10507T C14408T C16260T G19962T A23403G G25563T G26690T C28821A G29348T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500863 MT911828
 2020-04-25 2020-07-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0711/2020
 AT1- C241T C1059T C3037T C10776T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_507229
 2020-04-25 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII10261S/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A16775G A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507230
 2020-04-25 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII10289S/2020
 ATTAAAGGTTTA1- C241T C3037T A7449C A9204C C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_508350
 2020-04-25 2020-08-04
 India hCoV-19/India/IK20/2020
 AT1- C241T C3037T C14408T T21033C A23403G G29688T G29868A

EPI_ISL_508351
 2020-04-25 2020-08-04
 India hCoV-19/India/IK21/2020
 ATT1- C241T C3037T C14408T T21033C A23403G G29688T G29868A

EPI_ISL_508352
 2020-04-25 2020-08-04
 India hCoV-19/India/IK22/2020
 A1- C6312A G8366A G11083T C13730T C23929T T27384C C28311T G29868A

EPI_ISL_508353
 2020-04-25 2020-08-04
 India hCoV-19/India/IK23/2020
 ATTA1- C241T C3037T G8540A T13885C C14408T G15451A C16887T A23403G G29868A

EPI_ISL_508354
 2020-04-25 2020-08-04
 India hCoV-19/India/IK24/2020
 ATTAAAGGTTTA1- C241T C3037T C13730T C14408T A23403G G29868A

EPI_ISL_508355
 2020-04-25 2020-08-04
 India hCoV-19/India/IK25/2020
 A4T G6865T C7945T C8782T C10851T G22468T T28144C G28878A G29742A G29868A

EPI_ISL_509691 MT844037
 2020-04-25 2020-08-05
 United States SARS-CoV-2/human/USA/UT-CDC-9750/2020
 C241T C3037T C5184T C14408T A23403G C26256T C29668T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_510160
 2020-04-25 2020-08-06
 United States hCoV-19/USA/UT-CDC-1251/2020
 C241T C1889Y C3037T C3397Y G3719R C4672T C5184T C14408T G17122T C18457T A19334G A23403G A25121T C26256T C26542T C29668T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_512225
 2020-04-25 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_512271
 2020-04-25 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_523996
 2020-04-25 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-10167V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C1191T C3037T C14408T A23403G G25538T A27533G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524794
 2020-04-25 2020-08-28
 Brazil hCoV-19/Brazil/MA-IEC-165425/2020
 C241T C3037T A8374G C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_526228
 2020-04-25 2020-09-01
 Hungary hCoV-19/Hungary/MH-5657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3426T C3686T T10567C C14408T A23403G G25074T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526762
 2020-04-25 2020-09-02
 United Kingdom hCoV-19/England/201790453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C9870T A12458G C14408T A23403G AAAAAA29898-

EPI_ISL_526763
 2020-04-25 2020-09-02
 United Kingdom hCoV-19/England/201790455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C9870T A12458G C14408T A23403G AAAAAAAAAAA29893-

EPI_ISL_526765
 2020-04-25 2020-09-02
 United Kingdom hCoV-19/England/201790459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C9870T A12458G C14408T G18984T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_526766
 2020-04-25 2020-09-02
 United Kingdom hCoV-19/England/201790460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C9870T A12458G C14408T A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_526767
 2020-04-25 2020-09-02
 United Kingdom hCoV-19/England/201790463/2020
 ATTAAAGGTT1- C241T C3037T C9870T A12458G C14408T A23403G C27999T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_526769
 2020-04-25 2020-09-02
 United Kingdom hCoV-19/England/201790472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9870T A12458G C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_526770
 2020-04-25 2020-09-02
 United Kingdom hCoV-19/England/201790473/2020
 ATTAAAGGT1- C241T G1322A C3037T C9870T A12458G C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527345
 2020-04-25 2020-09-03
 United Kingdom hCoV-19/England/20179043504/2020
 ATTAAAGGTTTA1- C241T C3037T C9870T G10523S A12458G C14408T A23400R A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527348
 2020-04-25 2020-09-03
 United Kingdom hCoV-19/England/20179043804/2020
 AT1- C241T C3037T C9870T A12458G C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527349
 2020-04-25 2020-09-03
 United Kingdom hCoV-19/England/20179043904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9870T A12458G C14408T A16128G A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527352
 2020-04-25 2020-09-03
 United Kingdom hCoV-19/England/20179044304/2020
 A1- C241T C3037T C9870T A12458G C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527353
 2020-04-25 2020-09-03
 United Kingdom hCoV-19/England/20179044404/2020
 AT1- C241T C3037T C9870T A12458G C14408T C19862Y A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_527356
 2020-04-25 2020-09-03
 United Kingdom hCoV-19/England/20179044804/2020
 ATTA1- C241T C3037T C9870T A12458G C14408T A23403G AAAAAAAAAAAAAAAAA29887-

EPI_ISL_527674
 2020-04-25 2020-09-04
 United States hCoV-19/USA/MN-CDC-6211/2020
 C241T C1059T C1314T C3037T C14408T A23403G G25563T C25941T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528433
 2020-04-25 2020-09-07
 United Kingdom hCoV-19/England/20179044504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9870T A12458G C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_528434
 2020-04-25 2020-09-07
 United Kingdom hCoV-19/England/20179044904/2020
 ATTAAA1- C241T C3037T C9870T A12458G C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_528710
 2020-04-25 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/H10/2020
 C241T C3037T G5924A C14408T T21775G A23403G GGG28881AAC

EPI_ISL_528716
 2020-04-25 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/H21/2020
 C241T C3037T C14408T G17601T G18960A A23403G GGG28881AAC

EPI_ISL_528719
 2020-04-25 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/H5/2020
 C241T G2518A C3037T G5230T C7945T C14408T A20268G A23403G A29307C

EPI_ISL_529922 MT992737
 2020-04-25 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1129/2020
 A1- C241T TGGTCATGTTATGGT508- C1059T C3037T C4002T C14408T G21119T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_529924 MT992739
 2020-04-25 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1131/2020
 AT1-C C241T C1059T C3037T C14408T A23403G C24034T G25429A G25563T

EPI_ISL_529927 MT992742
 2020-04-25 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C G29540A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_529928 MT992743
 2020-04-25 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1138/2020
 ATTAAA1- C241T C1059T C3037T G11221A C14408T C16260T C20930T A23403G G25563T C28821A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_529929 MT992744
 2020-04-25 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C11224T C11572T C13721T C14408T C19938T A23403G G25563T C29870A

EPI_ISL_529930 MT992745
 2020-04-25 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1141/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529931 MT992746
 2020-04-25 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1142/2020
 ATTAAAGGTT1- C241T G353A C1059T C3037T C12400T C14408T C15656T A23403G G25563T C29870A

EPI_ISL_529932 MT992747
 2020-04-25 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A20741G A23403G G25563T

EPI_ISL_529933 MT992748
 2020-04-25 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1145/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_529934 MT992749
 2020-04-25 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1147/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C18998T A20553G G22487C A23403G G25563T G29540A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529935 MT992750
 2020-04-25 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1149/2020
 ATTA1- C241T C1059T A2182G C3037T G4960T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530077
 2020-04-25 2020-09-10
 Spain hCoV-19/Spain/MD-LP80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14748G A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530209 MT997731
 2020-04-25 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1613/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_530210 MT997732
 2020-04-25 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T T19527C A23403G G25563T C27964T G28027C C28099T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530211 MT997733
 2020-04-25 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1615/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_534323
 2020-04-25 2020-09-13
 Brazil hCoV-19/Brazil/SP-304/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C14408T T14501C G17632A A23403G T27299C GGG28881AAC T29148C AG29852TA TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_534324
 2020-04-25 2020-09-13
 Brazil hCoV-19/Brazil/SP-305/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G872T C3037T C3486T C14408T A23403G G25088T GGG28881AAC TC29856CT TAGGAG29859CTTACT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_534325
 2020-04-25 2020-09-13
 Brazil hCoV-19/Brazil/SP-306/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C635T T1531C C3037T C14408T G18520A A23403G T27299C GGG28881AAC T29148C TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_534866
 2020-04-25 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3558/2020
 ATTAAAGGTTTATACCTTCC1- C241T C2142T C3037T C14408T C19170T G19509A C20270T C21910T TTA22159- A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_534881
 2020-04-25 2020-09-14
 United Kingdom hCoV-19/England/OXON-B36FB/2020
 C241T C3037T C5340T C14408T A23403G G25429T A29890R A29895R A29900R

EPI_ISL_534967
 2020-04-25 2020-09-14
 United Kingdom hCoV-19/England/OXON-B46FA/2020
 C241T C3037T C3373A C3923A C11195T C14408T C18252T G19455T A23403G GGG28881AAC

EPI_ISL_534969
 2020-04-25 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4715/2020
 C241T C3037T C9180T C14408T A23403G G25922T GGG28881AAC C29013T

EPI_ISL_534972
 2020-04-25 2020-09-14
 United Kingdom hCoV-19/England/OXON-B478E/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAA29897-

EPI_ISL_534973
 2020-04-25 2020-09-14
 United Kingdom hCoV-19/England/OXON-B47CA/2020
 C241T C3037T C3373A C3923A C11195T C14408T C18252T G19455T A23403G GGG28881AAC

EPI_ISL_537491
 2020-04-25 2020-09-16
 United States hCoV-19/USA/CA-UCLA-15/2020
 ATTAAAGGTTTATA1- C241T C1059T C2706T C3037T C14408T A23403G C24198T G25563T C29614T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_542530
 2020-04-25 2020-09-23
 United States hCoV-19/USA/TX-HMH-1100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4931A C6990T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542534
 2020-04-25 2020-09-23
 United States hCoV-19/USA/TX-HMH-1108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T A23403G G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542539
 2020-04-25 2020-09-23
 United States hCoV-19/USA/TX-HMH-1113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C22444T G23224T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542546
 2020-04-25 2020-09-23
 United States hCoV-19/USA/TX-HMH-1137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T9853C C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542773
 2020-04-25 2020-09-23
 United States hCoV-19/USA/TX-HMH-1524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T T26443C C27964T G28221T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542876
 2020-04-25 2020-09-23
 United States hCoV-19/USA/TX-HMH-1844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT627749
 2020-04-25 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S617/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T G16489T T16617C A23403G G25563T C26204T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT810769
 2020-04-25 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1695-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A19385C A20268G A23403G C28854T C29167T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810847
 2020-04-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1531-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810900
 2020-04-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1629-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T G25981T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810947
 2020-04-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0233-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C9430T C14408T G18972T G19969A A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT967927
 2020-04-25 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6211/2020
 C241T C1059T C1314T C3037T C14408T A23403G G25563T C25941T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_435401
 2020-04-26 2020-05-04
 United States hCoV-19/USA/WI-GMF-01828/2020
 C241T C1059T C3037T C9866T C14408T A14747G A20755C G21761T G22017T A23403G G25563T

EPI_ISL_436565 MT706379
 2020-04-26 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T809A C1059T A2109G C3037T G5629T C14408T C15450T C16017T C16616T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436622 MT706435
 2020-04-26 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25624T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436625 MT706437
 2020-04-26 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1595A C2416T C3037T A9683G C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436626 MT706438
 2020-04-26 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G7393A C14408T C21575T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436731
 2020-04-26 2020-05-07
 Italy hCoV-19/Italy/TE26423/2020
 C241T C1593T C3037T C3096T C5184Y C6638Y A6863M A6866W A6869W C14408T A19392G C21575Y T22246C A23403G C24919T G25526K C27889Y GGG28881AAC C29750T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_437440 MT451876
 2020-04-26 2020-05-09
 India SARS-CoV-2/human/IND/GBRC12/2020
 C241T GTT669- C3037T G11083T G14290T C14408T G18186T C18877T C21364T A23403G A25104G G25563T C26735T

EPI_ISL_437444 MT451880
 2020-04-26 2020-05-09
 India SARS-CoV-2/human/IND/GBRC16/2020
 C6312A G11083T C11200T C13730T C16017T C23929T G25354T C28311T

EPI_ISL_437445 MT451881
 2020-04-26 2020-05-09
 India SARS-CoV-2/human/IND/GBRC17a/2020
 C241T C2836T C3037T G14274C C14408T C18877T C22444T A23403G G23678T G25290T G25563T G25855T C26735T C28854T

EPI_ISL_437446 MT451882
 2020-04-26 2020-05-09
 India SARS-CoV-2/human/IND/GBRC17b/2020
 C241T C2836T C3037T G14274C C14408T C18877T C22444T A23403G G25290T G25563T G25855T C26735T C28854T

EPI_ISL_437448 MT451884
 2020-04-26 2020-05-09
 India SARS-CoV-2/human/IND/GBRC19/2020
 C241T C3037T C14408T A14673G A23403G

EPI_ISL_437449 MT451885
 2020-04-26 2020-05-09
 India SARS-CoV-2/human/IND/GBRC20/2020
 C241T C3037T AA10478CT C14408T C18877T A23403G G25563T C26735T

EPI_ISL_437452 MT451888
 2020-04-26 2020-05-09
 India SARS-CoV-2/human/IND/GBRC23/2020
 C241T C1519T C2836T C3037T A5821G A5825G A6183G C14408T C18877T G21724T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_437453 MT451889
 2020-04-26 2020-05-09
 India SARS-CoV-2/human/IND/GBRC24a/2020
 A6081G C6312A T6989C C13730T T21628G C23929T C28311T

EPI_ISL_437454 MT451890
 2020-04-26 2020-05-09
 India SARS-CoV-2/human/IND/GBRC24b/2020
 C241T C3037T A6081G C6312A T6989C C13730T A13859G C14408T G16078A C18877T T21628G C22444T G23311T C23929T G25563T C25904T C28311T

EPI_ISL_437518
 2020-04-26 2020-05-11
 United States hCoV-19/USA/AK-PHL283/2020
 C241T G362A C1059T C3037T A5011C C14408T G23120T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_437567
 2020-04-26 2020-05-11
 United States hCoV-19/USA/CA-SR0237/2020
 C241T A1096G C3037T C14408T G14874T G15982T C18877T A23403G G24914T G25563T

EPI_ISL_437568
 2020-04-26 2020-05-11
 United States hCoV-19/USA/CA-SR0236/2020
 C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_438171
 2020-04-26 2020-05-12
 United States hCoV-19/USA/WA-S618/2020
 C241T C1059T C3037T C10369T C12068T C14408T G16912T T18863C A23403G G25563T G29553A

EPI_ISL_438172
 2020-04-26 2020-05-12
 United States hCoV-19/USA/WA-S619/2020
 C241T C1059T C3037T C12068T C14408T G16912T T18863C A23403G G25563T G29553A

EPI_ISL_438173
 2020-04-26 2020-05-12
 United States hCoV-19/USA/WA-S620/2020
 C241T C313T C3037T C3096T C14408T A23403G C25904T GGG28881AAC

EPI_ISL_438697
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83E1A/2020
 C241T G2626A C3037T C14408T C14805T C21691T A23403G GGG28881AAC

EPI_ISL_438708
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83EED/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC

EPI_ISL_438709
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83EFC/2020
 C241T C3037T C11606T C14408T C16163T A23403G C25624T C26002A GGG28881AAC

EPI_ISL_438712
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83F44/2020
 C241T C3037T C6027T C14408T A23403G GGG28881AAC

EPI_ISL_438714
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83F62/2020
 C241T C3037T C5178T C8994T C14408T A23403G GGG28881AAC

EPI_ISL_438716
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83F80/2020
 C241T C1059T C1218T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_438726
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/England/CAMB-84031/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_438733
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/England/CAMB-840B9/2020
 A2480G C2558T G4185A G11083T C14805T G26144T C29013T

EPI_ISL_438735
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/England/CAMB-840D7/2020
 C241T G526T C3037T A4624G C14408T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_438736
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/England/CAMB-840E6/2020
 C241T C3037T T13902C C14408T A23403G GGG28881AAC

EPI_ISL_438737
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/England/CAMB-840F5/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_438745
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8465D/2020
 C241T C1684T C3037T A3523G C4002T G10097A C13536T C14184T C14408T G18255T C21058T A23403G C23731T GGG28881AAC

EPI_ISL_439035
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR3123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6673C C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439249
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2650/2020
 C241T C3037T C14408T A15834G A23403G G25320T G26615T C27765T GGG28881AAC

EPI_ISL_439254
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2662/2020
 C241T G362A C3037T C14408T A20268G C21595T A23403G C28854T

EPI_ISL_439255
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2663/2020
 C241T C3037T C14408T A20268G A23403G G25218T C26873T C28854T

EPI_ISL_439256
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2666/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_439257
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2670/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_439258
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2673/2020
 C241T G922T C3037T C14408T A20268G A23403G C26873T C28854T

EPI_ISL_439259
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2674/2020
 C241T C3037T C3737T C14408T A20268G A23403G G29734C

EPI_ISL_439261
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2678/2020
 C241T C3037T C14408T C14571T A20268G C22444T A23403G C28854T

EPI_ISL_439262
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2679/2020
 C241T C3037T C14408T T19248C A20268G A23403G

EPI_ISL_439263
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2683/2020
 C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_439264
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2684/2020
 C241T C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_440946
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9CE0F/2020
 C241T C936T C3037T C14408T C15324T A23403G T23905C

EPI_ISL_440948
 2020-04-26 2020-05-12
 United Kingdom hCoV-19/England/LIVE-9CE78/2020
 C241T C3037T C10252T T14103C C14408T C14889T C21635T A23403G C28748T GGG28881AAC

EPI_ISL_444055
 2020-04-26 2020-05-13
 United States hCoV-19/USA/CA-CZB-1097/2020
 ATTA1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_444334
 2020-04-26 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AB80E/2020
 C241T C3037T C13730T C14408T A23403G G25429T

EPI_ISL_444335
 2020-04-26 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AB82C/2020
 C241T A2775G C3037T G4255T C13568T C14235T C14408T A20355G A23403G A26530G

EPI_ISL_444336
 2020-04-26 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AB84A/2020
 C241T C920T C3037T C13730T C14408T C14576T A23403G G25429T

EPI_ISL_444348
 2020-04-26 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABF27/2020
 C241T C3037T C14408T C19484T C19524T T19839C A23403G GGG28881AAC

EPI_ISL_444362
 2020-04-26 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AC032/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_444456 MT467237
 2020-04-26 2020-05-13
 India SARS-CoV-2/human/IND/GBRC25/2020
 C241T C3037T C10277T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_444458 MT467241
 2020-04-26 2020-05-13
 India SARS-CoV-2/human/IND/GBRC27/2020
 C241T C3037T G4866T C14408T C14425A C19017T A23403G C29769T

EPI_ISL_445069
 2020-04-26 2020-05-14
 Luxembourg hCoV-19/Luxembourg/LNS3029697/2020
 C241T C3037T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_447554 MT481907
 2020-04-26 2020-05-17
 India SARS-CoV-2/human/IND/GBRC92/2020
 C241T C3037T C14408T A23403G

EPI_ISL_449203
 2020-04-26 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C157Y C241T C1059T C3037T T7020G C14408T C16887T C17766T A23403G C23929Y G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449234
 2020-04-26 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T G29825A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449238
 2020-04-26 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449239
 2020-04-26 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16887T C19170T G19509A G20134T G21494A TTTGGGTGTTTA21982- A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449240
 2020-04-26 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449242
 2020-04-26 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C26645T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449243
 2020-04-26 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449244
 2020-04-26 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449245
 2020-04-26 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449246
 2020-04-26 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C15579T C17470T C26088T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449247
 2020-04-26 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449248
 2020-04-26 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T C14408T A20268G G22992T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449301
 2020-04-26 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4368/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_449302
 2020-04-26 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4372/2020
 C241T C3037T C10798A C13862T C14408T A23403G T25580C C28836T C29640T

EPI_ISL_450824
 2020-04-26 2020-05-22
 Sweden hCoV-19/Sweden/20-07928/2020
 C241T C1059T C1427T G2659T C2842A G2849T C3037T G9130T C12020T A13338G C14408T C23191T A23403G G24368T G25250T G25537T G25563T

EPI_ISL_451648
 2020-04-26 2020-05-25
 Poland hCoV-19/Poland/Pom7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_452059
 2020-04-26 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-198/2020
 C241T C3037T C7834T C14408T C21707T C21855T A23403G C26984T

EPI_ISL_452060
 2020-04-26 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-199/2020
 C241T C1059T C3037T C6198T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_452087
 2020-04-26 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-249/2020
 C241T C3037T C7834T C14408T C21707T A23403G

EPI_ISL_452089
 2020-04-26 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-252/2020
 C241T C1059T C3037T T8788C C14408T G20887A A23403G G25563T G25785T G26951A

EPI_ISL_452090
 2020-04-26 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-254/2020
 C241T C1059T C3037T T8788C C14408T G20887A A23403G G25563T G25785T G26951A

EPI_ISL_452091
 2020-04-26 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-255/2020
 C241T G2801T C3037T C7834T C14408T G15906A C21707T C21855T A23403G

EPI_ISL_452217
 2020-04-26 2020-05-27
 India hCoV-19/India/NIV-QC-800/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3634T T5593C C10582T C14408T C15324T A23403G G25252T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_453558
 2020-04-26 2020-05-27
 United Kingdom hCoV-19/England/NORW-E8DF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G A23570T G26062T GGG28881AAC

EPI_ISL_453560
 2020-04-26 2020-05-27
 United Kingdom hCoV-19/England/NORW-E8E31/2020
 ATTA1- C241T C3037T C5691T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC

EPI_ISL_453565
 2020-04-26 2020-05-27
 United Kingdom hCoV-19/England/NORW-E8F3E/2020
 AT1- C241T C1713A C2940T C3037T C14408T A23403G

EPI_ISL_453567
 2020-04-26 2020-05-27
 United Kingdom hCoV-19/England/NORW-E8F5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2940T C3037T G14400A C14408T C21648T A23403G

EPI_ISL_453583
 2020-04-26 2020-05-27
 United Kingdom hCoV-19/England/NORW-E9216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A5146C C7764T C14408T T15338C A23403G

EPI_ISL_453584
 2020-04-26 2020-05-27
 United Kingdom hCoV-19/England/NORW-E9243/2020
 ATTA1- C241T C3037T C8994T G14241K C14408T G22992A A23403G GGG28881AAC

EPI_ISL_453592
 2020-04-26 2020-05-27
 United Kingdom hCoV-19/England/NORW-E9331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A C11195T C14408T C15216T A23403G C28775T GGG28881AAC

EPI_ISL_454201
 2020-04-26 2020-05-28
 Portugal hCoV-19/Portugal/PT0477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T G8371T G11083T C14408T A23403G G25563T C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454504
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26473/2020
 C884T G1397A TTG3333- C4234T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454505
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26474/2020
 C884T G1397A C1469T TTG3333- C4234T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454506
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26478/2020
 C884T G1397A T3578C C4234T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454507
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26489/2020
 C884T G1397A TTG3333- A3591G C4234T C6187T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454509
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26497/2020
 C884T G1397A TTG3333- C4234T C6187T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454510
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26501/2020
 C884T G1397A C4234T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454511
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26506/2020
 C884T G1397A TTG3333- C4234T G8653T G11083T G14030A T16272G C17141A G25244T T28688C G29742T

EPI_ISL_454512
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26548/2020
 C884T G1397A TAT3331- C4234T G8653T G11083T T16272G C17141A A21589G C27920A T28688C G29742T

EPI_ISL_454513
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26549/2020
 C884T G1397A TTG3333- C4234T C4331T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454514
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26585/2020
 C884T G1397A C4234T C4331T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454515
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26617/2020
 C884T G1397A TTG3333- C4234T G8653T G11083T G14030A T16272G C17141A T28688C G29742T

EPI_ISL_454516
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26827/2020
 G2448A C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454517
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26828/2020
 G2448A C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454518
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26829/2020
 G2448A C8782T T9477A C14805T G25979T TTT27792- T28144C C28657T C28863T

EPI_ISL_454519
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/34391/2020
 C8782T T9477A C14805T C19637T C21216T G25979T T28144C C28657T C28863T

EPI_ISL_454520
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/38533/2020
 C900T C8782T T9477A C9491T G11083T C12459T C13046T C14805T G25979T T28144C C28657T C28863T

EPI_ISL_454587
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26475/2020
 C884T G1397A TTG3333- C4234T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454589
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26508/2020
 C884T G1397A TTG3333- C4234T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454590
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26530/2020
 C884T G1397A TTG3333- C4234T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454591
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26545/2020
 C884T G1397A TTG3333- C4234T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454593
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26574/2020
 C884T G1397A TTG3333- C4234T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454594
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26576/2020
 C884T G1397A TTG3333- C4234T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454596
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26577/2020
 C884T G1397A TTG3333- C4234T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454597
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26582/2020
 C884T G1397A TTG3333- C4234T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454598
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26584/2020
 C884T G1397A TTG3333- C4234T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454599
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26562/2020
 C884T G1397A C4234T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454600
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26565/2020
 C884T G1397A TTG3333- C4234T C4331T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454601
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26568/2020
 C884T G1397A TTG3333- C4234T C4331T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454603
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26579/2020
 C884T G1397A TTG3333- C4234T C4331T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454604
 2020-04-26 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/26580/2020
 C884T G1397A TTG3333- C4234T C4331T G8653T G11083T T16272G C17141A T28688C G29742T

EPI_ISL_454615 MT533212
 2020-04-26 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1150/2020
 ATTAAAGGTTTA1- C241T C583T C1059T G2764T C3037T C14408T C17402T A19459G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_454618 MT533215
 2020-04-26 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C2636A C8782T C10776T C17747T A17858G C18060T T20315A G25593K T28144C G29751K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_454649 MT533198
 2020-04-26 2020-05-28
 United States SARS-CoV-2/human/USA/VI-CDC-4371/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_456113
 2020-04-26 2020-06-01
 United States hCoV-19/USA/NJ-NYUMC841/2020
 C241T C2416T C3037T C14408T A18010G A23403G G25563T G28380A G29779T

EPI_ISL_456154
 2020-04-26 2020-06-02
 Colombia hCoV-19/Colombia/INS-103303/2020
 C241T C3037T C6026T C14408T C17678T G22104T A23403G GGG28881AAC T29856W

EPI_ISL_457239
 2020-04-26 2020-06-02
 United Kingdom hCoV-19/England/EXET-1368EA/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_458030
 2020-04-26 2020-06-03
 India hCoV-19/India/CCMB_C12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8917T C14408T A20374G A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458031
 2020-04-26 2020-06-03
 India hCoV-19/India/CCMB_C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8917T G9389A C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458141
 2020-04-26 2020-06-03
 Brazil hCoV-19/Brazil/PA164239-IEC/2020
 C241T C3037T A6319G C14408T A23403G G25088T C25886T T26149C C28253T GGG28881AAC

EPI_ISL_459448
 2020-04-26 2020-06-04
 United Kingdom hCoV-19/England/CAMB-1ADDB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T G17211K A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459453
 2020-04-26 2020-06-04
 United Kingdom hCoV-19/England/CAMB-1ADE0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C9474T C11379T C12754T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459459
 2020-04-26 2020-06-04
 United Kingdom hCoV-19/England/CAMB-1ADD94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2937T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_459477
 2020-04-26 2020-06-04
 United Kingdom hCoV-19/England/CAMB-1ADE82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_460926
 2020-04-26 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T C18654T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461183
 2020-04-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C C934T ATG1605- C3177T C17410T C29171T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461204
 2020-04-26 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C14408T C18877T A23403G G24197T G25563T C26735T G26898A T28600C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461273
 2020-04-26 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461341
 2020-04-26 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G C28932T G29422T A29684G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461342
 2020-04-26 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461753
 2020-04-26 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5481/2020
 C241T C2113T C3037T C7765T C10369T C13968T C14189T C14408T C17690T C18877T A23403G T24923C G25563T

EPI_ISL_461754
 2020-04-26 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5482/2020
 C241T C3037T C10798A C13862T C14408T T20892A A23403G C28836T

EPI_ISL_461755
 2020-04-26 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5483/2020
 C241T G1322T C2113T C3037T C7765T C13968T C14189T C14408T C17690T C18877T A23403G T24923C G25563T

EPI_ISL_461756
 2020-04-26 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5484/2020
 C241T C3037T T13717A C14408T A20168G A23403G GGG28881AAC

EPI_ISL_461757
 2020-04-26 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5486/2020
 C241T C3037T T13717A C14408T G16943T A20168G A23403G GGG28881AAC

EPI_ISL_461827
 2020-04-26 2020-06-06
 United Kingdom hCoV-19/England/NORW-E9207/2020
 ATTAAA1- C241T C2940T C3037T A9238C C14408T C21648T A23403G A25564G

EPI_ISL_462719 MT584997
 2020-04-26 2020-06-08
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20637/2020
 A187G C241T C2037T C3037T C3787T C14408T A23403G C25465T C25916T

EPI_ISL_462720 MT584998
 2020-04-26 2020-06-08
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20638/2020
 A187G C241T C2037T C3037T C3787T C14408T A23403G C25465T C25916T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_463412 MT642382
 2020-04-26 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S922/2020
 ATTAAAGGTTTA1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463413 MT642142
 2020-04-26 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S923/2020
 AT1- C8782T G11083T C17747T A17858G C18060T G19872T G21724T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463417 MT642242
 2020-04-26 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S927/2020
 ATT1- G3371A C8782T C17747T A17858G C18060T T19783C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463437 MT642078
 2020-04-26 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S947/2020
 ATT1- C241T C1059T G2235A C3037T C14408T A23403G G25563T G26713T G29553A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463438 MT642280
 2020-04-26 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S948/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463477 MT642356
 2020-04-26 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S987/2020
 ATTAAAGGTTTAT1- G2840A C8782T C17747T A17858G C18060T C22987T A26045G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_467396
 2020-04-26 2020-06-13
 United States hCoV-19/USA/NY-NYUMC903/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_467780
 2020-04-26 2020-06-15
 Romania hCoV-19/Romania /ChVir7246/2020
 ATTAAAGGTTTAT1- C241T C3037T C6388T C13536T C14408T C15180T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_467805 MT680239
 2020-04-26 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0411/2020
 C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_467806 MT680240
 2020-04-26 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0412/2020
 ATTA1- C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_467807 MT680241
 2020-04-26 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0413/2020
 ATTA1- C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_467808 MT680242
 2020-04-26 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C4668T C14408T G20991T A23403G G25563T C25585T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_468247 LR824168 LR860760
 2020-04-26 2020-06-16
 Switzerland 120169
 C241T C3037T C14408T C15324T T19530W A19548R A22405M A23403G

EPI_ISL_468346 MT628084
 2020-04-26 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G10617A C25692T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_468607 MT631799
 2020-04-26 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C379A C1059T C3037T C10619M C14408T C22224T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_470875
 2020-04-26 2020-06-19
 Australia hCoV-19/Australia/WA58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T A9301G A9409G C14408T A23403G C27297T AACATACGAGGGCAATTCACCATTTCATCCTCTAGCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTT27507- CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471402
 2020-04-26 2020-06-20
 Democratic Republic of the Congo hCoV-19/DRC/4012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11083T C14408T C15324T A23403G G23426T C24099T T26286C A26952G C27679T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_471403
 2020-04-26 2020-06-20
 Democratic Republic of the Congo hCoV-19/DRC/4020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11083T C14408T C15324T C15371T A23403G G24977T G27861A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_471729
 2020-04-26 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20705/2020
 C241T C1059T C3037T T8899C C14408T T15849Y A23403G G25563T C29774T AAAAAAAAAAAAAAAA29888-

EPI_ISL_472007
 2020-04-26 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F72F/2020
 C241T C3037T G10097A C14408T T17895C A23403G C23731T C24863T GGG28881AAC

EPI_ISL_472418
 2020-04-26 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111E98/2020
 C241T C3037T C7765T G9928T G10097A C10189T C14408T G22992T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_472848
 2020-04-26 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15FD28/2020
 A1- C241T C3037T G4504A G11801A G12268R C14408T T16671C T19839C A23403G C23453Y G25552T GGG28881AAC

EPI_ISL_472898
 2020-04-26 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160119/2020
 C241T C3037T T5573C C6380T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_473970
 2020-04-26 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1635FC/2020
 ATTA1- C241T C3037T C14408T G21624T A23403G G25598T GGG28881AAC

EPI_ISL_474052
 2020-04-26 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163BBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C10376T C14408T G18583T A20463G A23403G G24368T G25563T

EPI_ISL_475384
 2020-04-26 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C58A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2940T C3037T C10341T C14408T C19524T T21467C A23403G T28693C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476717
 2020-04-26 2020-06-25
 United States hCoV-19/USA/MN-MDH-1132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_476718
 2020-04-26 2020-06-25
 United States hCoV-19/USA/MN-MDH-1133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_476719
 2020-04-26 2020-06-25
 United States hCoV-19/USA/MN-MDH-1134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C539T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_477187
 2020-04-26 2020-06-29
 Singapore hCoV-19/Singapore/490/2020
 C6310A C6312A A7381G T8866C G11083T C13730T C19524T C23185T C23929T C28311T

EPI_ISL_477188
 2020-04-26 2020-06-29
 Singapore hCoV-19/Singapore/491/2020
 C6310A C6312A G11083T C13730T C19524T T19896C C23929T G25855C C28311T G29736T

EPI_ISL_477189
 2020-04-26 2020-06-29
 Singapore hCoV-19/Singapore/492/2020
 C6310A C6312A G11083T C13730T G18315A C19524T C19961T C23185T C23929T C28311T

EPI_ISL_477190
 2020-04-26 2020-06-29
 Singapore hCoV-19/Singapore/493/2020
 C6310A C6312A G11083T C13730T C18814T C19524T C23929T C26882T C28311T C29743T

EPI_ISL_477191
 2020-04-26 2020-06-29
 Singapore hCoV-19/Singapore/494/2020
 C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T

EPI_ISL_477634 MT679158
 2020-04-26 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C21057T A23403G G25563T C29870A

EPI_ISL_478866
 2020-04-26 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0209/2020
 C241T C3037T A9085G A10948G C14408T A23403G C27542T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_478876
 2020-04-26 2020-06-30
 United Kingdom hCoV-19/England/OXON-B038E/2020
 C241T C3037T G10328T A10948G C11976T C14408T C17339T A19182G A23403G T25414C C27542T GGG28881AAC G29202A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_479097
 2020-04-26 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1E6E/2020
 C241T C3037T C6723T C14408T T23035C A23403G G24893C C25521T C25611T GGG28881AAC AA29902-

EPI_ISL_479102
 2020-04-26 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1F2F/2020
 C241T C3037T C4002T C5183T C7926T G10097A C13536T C14408T G16228A A23403G C23731T C27999A GGG28881AAC AAAAA29899-

EPI_ISL_479201
 2020-04-26 2020-06-30
 United Kingdom hCoV-19/England/SHEF-C2116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1469T C3037T C14408T G21255T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479280
 2020-04-26 2020-06-30
 United Kingdom hCoV-19/England/SHEF-D2A09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C11750T C13381T C14408T A23403G C23731T A23992T C25350T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479482
 2020-04-26 2020-06-30
 Singapore hCoV-19/Singapore/526/2020
 C6312A C8139T G11083T C13730T C23929T G25769A AATATT26481- C28311T

EPI_ISL_479483
 2020-04-26 2020-06-30
 Singapore hCoV-19/Singapore/527/2020
 C832T C6310A C6312A G11083T C13694T C13730T C19524T C23185T C23929T C28311T

EPI_ISL_479485
 2020-04-26 2020-06-30
 Singapore hCoV-19/Singapore/529/2020
 C6310A C6312A G11083T C13730T G18315A C19524T C23185T C23929T C28311T

EPI_ISL_479486
 2020-04-26 2020-06-30
 Singapore hCoV-19/Singapore/530/2020
 C6310A C6312A G11083T C13730T A13810G C14571T G17592T C19524T C23929T T27588A C28311T

EPI_ISL_479487
 2020-04-26 2020-06-30
 Singapore hCoV-19/Singapore/531/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T

EPI_ISL_479488
 2020-04-26 2020-06-30
 Singapore hCoV-19/Singapore/532/2020
 C6310A C6312A G11083T C13730T C17010T C19524T C23185T C23929T C28311T

EPI_ISL_479489
 2020-04-26 2020-06-30
 Singapore hCoV-19/Singapore/533/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T T28420G

EPI_ISL_479491
 2020-04-26 2020-06-30
 Singapore hCoV-19/Singapore/535/2020
 C6310A C6312A G11083T T11296C C13730T C18329T C19524T A21309C C23185T C23929T C28311T

EPI_ISL_479492
 2020-04-26 2020-06-30
 Singapore hCoV-19/Singapore/536/2020
 C6310A C6312A T9199C G11083T C13730T C19524T T23030C C23929T T26731C C28311T

EPI_ISL_479501
 2020-04-26 2020-06-30
 India hCoV-19/India/NIV-15351/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C5700A T16124A G21255T A23403G G25489T G26951T GGG28881AAC A29731G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480246
 2020-04-26 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV114/2020
 C884T G1397A T7172G G8653T C10702T G11083T G11658C C12049T T20871C A21137G C21459T C21588T C23525T C26681T T28688C G29742T

EPI_ISL_480248
 2020-04-26 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV126/2020
 C241T C3037T C12809T C14408T A23403G C28391T GGG28881AAC

EPI_ISL_480299
 2020-04-26 2020-07-01
 Bulgaria hCoV-19/Bulgaria/16/2020
 C241T C3037T C9319T C14408T G22021T A23403G GGG28881AAC

EPI_ISL_480403 MT772570
 2020-04-26 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11224T C14408T C15026T A23403G G25563T C27686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480888 MT704055
 2020-04-26 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0237/2020
 A1- C241T C1059T C3037T C5183T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_480889 MT704056
 2020-04-26 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0238/2020
 A1- C241T C1059T C3037T C5183T C14408T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_481618
 2020-04-26 2020-07-03
 Finland hCoV-19/Finland/26A24S5/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481619
 2020-04-26 2020-07-03
 Finland hCoV-19/Finland/26A44S5/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481620
 2020-04-26 2020-07-03
 Finland hCoV-19/Finland/26A48S5/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481621
 2020-04-26 2020-07-03
 Finland hCoV-19/Finland/26A79S5/2020
 C241T C1059T C3037T C9565T A11983G C14408T A19838C A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481853
 2020-04-26 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C3037T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481918
 2020-04-26 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D0EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5891C C14408T A23403G GGG28881AAC C29013T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481921
 2020-04-26 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14120T C14408T G15672T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482060
 2020-04-26 2020-07-03
 United Kingdom hCoV-19/England/TBSD-2488DC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19398T A23403G G24077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482062
 2020-04-26 2020-07-03
 United Kingdom hCoV-19/England/TBSD-2488F54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6730Y G10324T C14408T A20465R A23403G G25429T C28045T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482064
 2020-04-26 2020-07-03
 United Kingdom hCoV-19/England/TBSD-2488E84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10411Y C14408T T23281C A23403G C25427T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482067
 2020-04-26 2020-07-03
 United Kingdom hCoV-19/England/TBSD-2488E48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C874T C2416T C3037T C14408T G16245A C19524T A20465R A23403G G25563T G26233T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482068
 2020-04-26 2020-07-03
 United Kingdom hCoV-19/England/TBSD-2488F18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C874T C2416T C3037T A9019R C14408T G16245A C19524T A20465R A23403G G25563T G26233T G28851K CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_482381
 2020-04-26 2020-07-03
 United States hCoV-19/USA/OR-PROV-115/2020
 C241T C1059T C3037T T3312C C14408T A23403G G25563T

EPI_ISL_482382
 2020-04-26 2020-07-03
 United States hCoV-19/USA/OR-PROV-117/2020
 C4876T G11083T C14805T GCTTTA22289- G26144T C29614T

EPI_ISL_483449
 2020-04-26 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0993-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28854T C28887T

EPI_ISL_484363
 2020-04-26 2020-07-08
 United Kingdom hCoV-19/England/NOTT-11229B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7765T G9526T G10097A C10189T C14408T C18267T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486158 MT750366
 2020-04-26 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1845/2020
 AT1- C241T C3037T C3768Y G6532T C14408T C18395T G18898T C21772T A23122R A23403G GGG28881AAC

EPI_ISL_486159 MT750367
 2020-04-26 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1846/2020
 AT1- A30R C241T C3037T G6532T C14408T C18395T G18898T C21772T A23403G T25902W T25908W G25913S GGG28881AAC

EPI_ISL_486336 MT750492
 2020-04-26 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2093/2020
 ATTA1- C2574Y C4776T C8782T C17747T A17858G C18060T C18395T G28086T T28144C

EPI_ISL_486337
 2020-04-26 2020-07-10
 United States hCoV-19/USA/CA-CZB-2094/2020
 ATTAAAGGTT1- C4776T G5539A C8782T C17747T A17858G C18060T A20059R G28086T T28144C

EPI_ISL_486338 MT750493
 2020-04-26 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2095/2020
 ATTA1- C21T C2470Y C4776T C8782T C17747T A17858G C18060T C18395T G19493R A23122V T25902W T25908W G25913S G28086T T28144C

EPI_ISL_487754
 2020-04-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T A7468G C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487756
 2020-04-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T C16806T A23403G C23731T G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487818
 2020-04-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T T20892A A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487857
 2020-04-26 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T C16806T A23403G C23731T G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489162
 2020-04-26 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FCF82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5719C G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489882 EPI_ISL_491078
 2020-04-26 2020-07-14
 Romania hCoV-19/Romania/ROSV_4714/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C3225A C14408T A20268G A23403G A23734G C27707T A29827T G29830T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_489883 EPI_ISL_491079
 2020-04-26 2020-07-14
 Romania hCoV-19/Romania/ROSV_4730/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T G1820A C3037T C14408T A20268G A23403G C27707T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840CT

EPI_ISL_490615
 2020-04-26 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C9328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490622
 2020-04-26 2020-07-15
 United Kingdom hCoV-19/England/SHEF-CBE43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11396T C14408T C17676T C18713T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490627
 2020-04-26 2020-07-15
 United Kingdom hCoV-19/England/SHEF-CDEC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6526G G10097A C11750T C13381T C14408T A23403G C23731T A23992T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490629
 2020-04-26 2020-07-15
 United Kingdom hCoV-19/England/SHEF-CE280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7423T C9180T G11083T C14408T C18713T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490642
 2020-04-26 2020-07-15
 United Kingdom hCoV-19/England/SHEF-D177C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21784C A22004G A22253T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491127
 2020-04-26 2020-07-16
 Oman hCoV-19/Oman/C-6583/2020
 AT1- A4C G8A C241T C3037T G10265A C14408T G16158T C16293T G17302T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_491132
 2020-04-26 2020-07-16
 Oman hCoV-19/Oman/C-6584/2020
 ATTAAAGGTTTATACCTTCCCAG1- G24C C241T C3037T G10265A C14408T G16158T C16293T G17302T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852T

EPI_ISL_491146
 2020-04-26 2020-07-16
 Oman hCoV-19/Oman/C-6069/2020
 ATTAAAGGTTTATACCT1- C241T C3037T T7288A G10265A C14408T C16293T G20995T A23403G C24138T C26858T GGG28881AAC G29440T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491166
 2020-04-26 2020-07-16
 Oman hCoV-19/Oman/B-3125/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T G10265A C14408T C16293T G17302T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_492284
 2020-04-26 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853B4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10556T C14408T A23403G GGG28881AAC C29013T C29272T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492329
 2020-04-26 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853B99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17249T G17722T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492463
 2020-04-26 2020-07-20
 United Kingdom hCoV-19/England/NORT-29986C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T T3783C C14408T G22093A A23403G A23999G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494680
 2020-04-26 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1593/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_494681
 2020-04-26 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1595/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T A8252G C14408T G15193A A23403G G25563T C25626G

EPI_ISL_494696
 2020-04-26 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C7768T T9037G C11575T C14408T A20268G A23403G C28854T

EPI_ISL_500621
 2020-04-26 2020-07-29
 Australia hCoV-19/Australia/NSW2115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507005
 2020-04-26 2020-08-03
 Singapore hCoV-19/Singapore/760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T6004C C6310A C6312A G11083T T11296C C13730T C19524T C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507225
 2020-04-26 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII10128S/2020
 C241T C3037T C14408T A20268G A23403G A29570G G29757T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_507226
 2020-04-26 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII10183S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A20268G A23403G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_508356
 2020-04-26 2020-08-04
 India hCoV-19/India/IK26/2020
 ATTA1- C7945T C8782T G22468T T28144C G28878A G29742A G29868A

EPI_ISL_511140
 2020-04-26 2020-08-07
 Portugal hCoV-19/Portugal/PT0881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C8782T T9477A T13638C G14500T C14805T A25921G G25979T T28144C C28657T C28863T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511184
 2020-04-26 2020-08-07
 Portugal hCoV-19/Portugal/PT0927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C5694T C14408T C16293T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_513169
 2020-04-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH603/2020
 C241T C3037T C14362A C14408T C18877T A23403G G25563T C26735T

EPI_ISL_515393
 2020-04-26 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0122/2020
 ATTAAA1- C241T C379A G885T C1059T C3037T CC14407TT A23403G A23687G G25563T G27516A

EPI_ISL_515394
 2020-04-26 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0123/2020
 ATTA1- C241T C379A G885T C1059T C3037T CC14407TT A23403G G25563T T27380C

EPI_ISL_522272
 2020-04-26 2020-08-25
 United States hCoV-19/USA/UT-02713/2020
 ATTAA1- C241T C1059T C3037T A7870G G12315A C14408T A23403G G25563T G27670T C27964T G29543T C29870A

EPI_ISL_522857
 2020-04-26 2020-08-26
 Italy hCoV-19/Italy/VR-IZSVe-50893/2020
 ATTA1- C241T C450T C3037T A8072G A11586G C14408T A23403G G25440T G28079K GGG28881AAC CTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29784-

EPI_ISL_523603
 2020-04-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523995
 2020-04-26 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-10152V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T G4201T C14408T C23086T A23403G C26527T A29869- AA29902-

EPI_ISL_524578
 2020-04-26 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5884T C11606T C14408T C16163T A23403G C25624T C26002A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524608
 2020-04-26 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE0F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G8371T C9072T G21600A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527376
 2020-04-26 2020-09-03
 Singapore hCoV-19/Singapore/867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C6310A C6312A A9419G G11083T C13730T C19524T C23929T C28311T CGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29743-

EPI_ISL_527573 MT958205
 2020-04-26 2020-09-03
 United States SARS-CoV-2/humans/USA/MN-MDH-1508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C14408T C21742T A23403G G24368T G25563T T29418C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527677
 2020-04-26 2020-09-04
 United States hCoV-19/USA/MN-CDC-6218/2020
 C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527870
 2020-04-26 2020-09-05
 Brazil hCoV-19/Brazil/SP-301/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G6352T C12053T C14408T T17154C C20132T A23403G G25088T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_528711
 2020-04-26 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/H12/2020
 C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_528712
 2020-04-26 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/H13/2020
 C186T C241T C3037T G5924A C14408T C21575T T21775G A23403G GGG28881AAC

EPI_ISL_528714
 2020-04-26 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/H2/2020
 C241T C3037T C6406T A6466G C14408T G17964T A23403G G24332T G28396A

EPI_ISL_528715
 2020-04-26 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/H20/2020
 C241T C3037T A6466G C14408T C17474T G17964T A23403G G28396A A28992T G29757T

EPI_ISL_528717
 2020-04-26 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/H23/2020
 C241T C3037T C5822T C14408T T21775G A23403G GGG28881AAC

EPI_ISL_530078
 2020-04-26 2020-09-10
 Spain hCoV-19/Spain/MD-LP81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G C28377T GGG28881AAC ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530208 MT997730
 2020-04-26 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T G1463A C3037T T3478C G7557A C8818T C14408T A20284G C22477T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_534995
 2020-04-26 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4B46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCA1- C241T C3037T T4867W T6577W C14408T A23403G G23587T C28720T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_535004
 2020-04-26 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4C9E/2020
 C241T C3037T C14408T G22592T A23403G G24087T GGG28881AAC

EPI_ISL_535013
 2020-04-26 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4D7D/2020
 C241T G2035T C3037T T9148C G10097A G11083T C14408T A23403G C23731T GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_537499
 2020-04-26 2020-09-16
 United States hCoV-19/USA/CA-UCLA-16/2020
 A1- C241T C3037T T4711C C14408T A23403G A28032T GGG28881AAC GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_539029
 2020-04-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A81E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539039
 2020-04-26 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C4012T G11083T C14805T G26144T C26681T C27600T A28387G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541377
 2020-04-26 2020-09-22
 Brazil hCoV-19/Brazil/SE-6539/2020
 AT1- C241T A2568G C3037T C14408T C15324T A23403G GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_541378
 2020-04-26 2020-09-22
 Brazil hCoV-19/Brazil/SE-6544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G13627T C14408T A16128G A23403G GGG28881AAC GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_541379
 2020-04-26 2020-09-22
 Brazil hCoV-19/Brazil/SE-6549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T T312C A2568G C3037T C14408T C15324T A23403G GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_541385
 2020-04-26 2020-09-22
 Brazil hCoV-19/Brazil/SE-6563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C11866T C14408T C18457T A23403G T27299C GGG28881AAC T29148C C29754T GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_542543
 2020-04-26 2020-09-23
 United States hCoV-19/USA/TX-HMH-1125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542562
 2020-04-26 2020-09-23
 United States hCoV-19/USA/TX-HMH-1164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A A2969G C3177T C6040T C8782T C8950T G10523C G12478A T14067C T18736C C23277T C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542652
 2020-04-26 2020-09-23
 United States hCoV-19/USA/TX-HMH-1322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17808T C21721T A23403G G25563T T27384C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559696
 2020-04-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-482D1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G A6211G A8659G C14408T C19488T C20719T A23403G C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560572
 2020-04-26 2020-09-29
 France hCoV-19/France/CVL8270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T G15262T C15324T C21636T A23403G TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

LR877181
 2020-04-26 2020-08-06
 Sweden P17157_1021
 ATTAAA1- G219T C241T C1059T C3037T C12915T C14408T C23202T A23403G G24368T G25563T A29287T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

LR877182
 2020-04-26 2020-08-06
 Sweden P17157_1016
 ATTAAAGGTTTAT1- C241T C1059T C3037T A3184G C14408T C21575T A23403G G24368T G25563T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

LR877183
 2020-04-26 2020-08-06
 Sweden P17157_1020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T G2755T C3037T G6352T C14408T A23403G G23463A G24368T G25563T T28889C GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

LR877186
 2020-04-26 2020-08-07
 Sweden P17157_1007
 ATTAAA1- C241T G2659T C3037T C5147T C6285T A9193G G11083T T11398G C14408T A23403G C27549T GGG28881AAC CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

MT460117
 2020-04-26 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1097/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT477862
 2020-04-26 2020-05-14
 United States SARS-CoV-2/human/USA/AK283/2020
 C241T G362A C1059T C3037T A5011C C14408T G23120T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT627764
 2020-04-26 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S620/2020
 ATTAAAGGTTT1- C241T C313T C3037T C3096T C14408T A23403G C25904T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627765
 2020-04-26 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S619/2020
 ATTAAAG1- C241T C1059T C3037T C12068T C14408T G16912T T18863C A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT627767
 2020-04-26 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S618/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C10369T C12068T C14408T G16912T T18863C A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT810881
 2020-04-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1593-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810882
 2020-04-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1595-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G C14408T G15193A A23403G G25563T C25626G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810897
 2020-04-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1626-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T T9037G C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810950
 2020-04-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0236-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810951
 2020-04-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0237-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1096G C3037T C14408T G14874T G15982T C18877T A23403G G24914T G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811456
 2020-04-26 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0993-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T C28887T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT967930
 2020-04-26 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6218/2020
 C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_436606 MT706420
 2020-04-27 2020-05-06
 United States SARS-CoV-2/human/USA/WI-UW-312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1595A C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_436725
 2020-04-27 2020-05-07
 Italy hCoV-19/Italy/TE27020/2020
 C241T C1593T C2110T C3037T G4105T A6866W A6869W C9491T C14408T T22246C A23403G C24919T CA27752YW T27757A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_436726
 2020-04-27 2020-05-07
 Italy hCoV-19/Italy/TE26533/2020
 ACC31GAG A35T C37S C241T C3037T A6866W A6869W C14408T C23271A A23403G T27210C C29077T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_436727
 2020-04-27 2020-05-07
 Italy hCoV-19/Italy/TE26539/2020
 C241T C1593Y C2110Y C3037T G4105K A6866W A6869W C9491Y C14408T T22246Y C23271M A23403G C24919Y T27210Y GGG28881RRS C29077Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_436729
 2020-04-27 2020-05-07
 Italy hCoV-19/Italy/TE26643/2020
 A31G C241T C3037T C3045T C6449T A6863M A6866W A6869W C14408T G19677R C21627Y A23403G G25459K GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_436730
 2020-04-27 2020-05-07
 Italy hCoV-19/Italy/TE26969/2020
 AG6GK C241T A518M G520K C3037T C4698T C10252T C11235T C14408T G22363T A23403G C29750G ATC29752RAG C29762T GT29764TG AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_436732
 2020-04-27 2020-05-07
 Italy hCoV-19/Italy/TE26425/2020
 A187G C241T C3037T G5018A A6866W A6869W C14408T C17976T C19164T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_437550
 2020-04-27 2020-05-11
 United States hCoV-19/USA/CA-SR0262/2020
 C241T C1059T C2028T C3037T C14408T G17014T A23403G G25563T G28812T G29781T

EPI_ISL_438174
 2020-04-27 2020-05-12
 United States hCoV-19/USA/WA-S621/2020
 C241T C1059T C3037T C12068T C14408T G16912T T18863C A23403G G25563T G29553A

EPI_ISL_438699
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83E38/2020
 C241T C3037T C14408T C14805T A23403G G24368T GGG28881AAC

EPI_ISL_438701
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83E56/2020
 C241T G2626A C3037T C14408T C14805T C21691T A23403G GGG28881AAC

EPI_ISL_438711
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83F35/2020
 C241T C3037T C6027T C14408T A23403G GGG28881AAC

EPI_ISL_438721
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83FEA/2020
 C241T AAGTCATTT686- C3037T C12225T C14408T A23403G C25782T A26530G G28739T

EPI_ISL_438744
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8464E/2020
 C241T C3037T C9924T C14408T G16206T A23403G GGG28881AAC C29585T

EPI_ISL_438746
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8466C/2020
 C241T C3037T C11606T C14408T C16163T A23403G C25624T C26002A GGG28881AAC

EPI_ISL_438747
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8467B/2020
 C241T C3037T C14408T G16206T A23403G C27813T

EPI_ISL_438748
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/England/CAMB-8468A/2020
 C241T C1684T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A23403G C23731T G23909T GGG28881AAC

EPI_ISL_439038
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR3126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A G11771A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439041
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/CVR3129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4878T G8017T C14408T G21268T G22708T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_439250
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB2656/2020
 C241T C3037T A10874G C14408T A23403G G25429T C25916T T26677C

EPI_ISL_439288
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3568/2020
 C241T C2940T C3037T C14408T A23403G T27580C

EPI_ISL_439290
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3573/2020
 CG241TT C3037T G11417C C14408T A23403G C25433T G26951C

EPI_ISL_439291
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3574/2020
 CG241TT C3037T G11417C C14408T A23403G C25433T G26951C

EPI_ISL_439292
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3576/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_439293
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3583/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G

EPI_ISL_439294
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3588/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_439296
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3598/2020
 C241T C1059T C1076T C3037T C10582T G11083T C14408T G22244T A23403G G25563T C26461T

EPI_ISL_439297
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3600/2020
 C7423T C7869T C20077A

EPI_ISL_439299
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3627/2020
 C241T C3037T C3656T C14408T A23403G GGG28881AAC

EPI_ISL_439301
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3631/2020
 C241T C3037T C14408T T19248C A20268G A23403G

EPI_ISL_439303
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3645/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_439304
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3652/2020
 C241T C3037T A8032G C14408T C18788T T19839C A23403G A24862G GGG28881AAC

EPI_ISL_439306
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3655/2020
 C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_439310
 2020-04-27 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3673/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_444051
 2020-04-27 2020-05-13
 United States hCoV-19/USA/CA-CZB-1093/2020
 ATTA1- C8782T C17747T A17858G C18060T T28144C

EPI_ISL_444052
 2020-04-27 2020-05-13
 United States hCoV-19/USA/CA-CZB-1094/2020
 ATTAA1- C241T C3037T C5467T C8389T G8785A C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_444053
 2020-04-27 2020-05-13
 United States hCoV-19/USA/CA-CZB-1095/2020
 ATTAAAGGTTTA1- C241T C3037T C5467T C8389T G8785A C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_444323
 2020-04-27 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AB561/2020
 C241T G2626A C3037T C14408T C14805T C21691T A23403G GGG28881AAC

EPI_ISL_444328
 2020-04-27 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AB701/2020
 C241T C3037T C14408T C19140T C19374T A23403G GGG28881AAC

EPI_ISL_444338
 2020-04-27 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABE84/2020
 C241T C313T C3037T C14408T C20404T A23403G G28179T GGG28881AAC

EPI_ISL_444340
 2020-04-27 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABEA2/2020
 C241T C313T C1710T C3037T C14408T A23403G C29363T

EPI_ISL_444342
 2020-04-27 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABEC0/2020
 C241T C3037T C14408T G18972T A23403G G27659T GGG28881AAC

EPI_ISL_444346
 2020-04-27 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABF09/2020
 C241T C3037T C11152T C14408T G22014A A23403G G25429T

EPI_ISL_444347
 2020-04-27 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABF18/2020
 C241T C2937T C3037T C14408T A20268G A23403G

EPI_ISL_444351
 2020-04-27 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABF63/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_444353
 2020-04-27 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABF81/2020
 C241T C3037T G8612T C14408T A23403G GGG28881AAC G29705T

EPI_ISL_444354
 2020-04-27 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABF90/2020
 C241T C683T G1820A C3037T C14408T A23403G G28514T

EPI_ISL_444356
 2020-04-27 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABFCD/2020
 C241T C3037T C10116T C14408T A14737G C19017T A23403G GGG28881AAC

EPI_ISL_444357
 2020-04-27 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABFDC/2020
 C241T C3037T T5521C C6558T G9130T C13730T C14408T A23403G G25429T G26529T

EPI_ISL_444358
 2020-04-27 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABFEB/2020
 C241T C3037T C3817T C14408T A23403G G28086T GGG28881AAC

EPI_ISL_444364
 2020-04-27 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AC050/2020
 C241T C3037T C13730T C14408T A23403G G25429T

EPI_ISL_444384
 2020-04-27 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AC21E/2020
 T212C C241T C3037T C6525T C14408T T15555C A23403G GGG28881AAC

EPI_ISL_447048 MT496991
 2020-04-27 2020-05-16
 India SARS-CoV-2/human/IND/GBRC71/2020
 C241T C2836T C3037T C14408T G15444T C18877T G20433T C22444T A23403G G25563T C26735T C27527T G28077T C28854T

EPI_ISL_447553 MT481906
 2020-04-27 2020-05-17
 India SARS-CoV-2/human/IND/GBRC91/2020
 C241T C2836T C3037T A5462G C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_447622
 2020-04-27 2020-05-18
 Taiwan hCoV-19/Taiwan/NTU28/2020
 C222T C6312A C7609T G11083T C13730T T16939C C23929T A26019G T28297C C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_447969
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD13E/2020
 C241T C3037T C13378T C14408T A23403G GGG28881AAC

EPI_ISL_447980
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD23B/2020
 C241T C3037T C6027T C14408T C21588T A23403G GGG28881AAC

EPI_ISL_449199
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A23572G A25798G C28311T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449200
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A23572G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449201
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A23572G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449216
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C11572T C13862T C14408T A23403G C28695T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449219
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16741T A20268G A23403G G25305C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449221
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T C19955T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449249
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A T11075C C13862T C14408T A23403G T27296C C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449250
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G24348C C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449251
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6248C C14408T A20268G A23403G C28290T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449252
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449253
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GAT27382CTC G28845T GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449254
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A11595G C12710T G28655C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449255
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G14831T G16741T A20268G A23403G G25305C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_449256
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A C3037T C3411T C3885T A5353G A7367C C14408T C17104T A20268G T22312C A23403G C26606T C28253T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449303
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4373/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_449324
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4708/2020
 C241T C3037T T3100G C8809T G10097A C14408T C16806T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_449325
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4709/2020
 C241T T1417G C3037T T3100G G10097A C14408T C16806T A23403G C23731T G25947T GGG28881AAC C29750T

EPI_ISL_449326
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4710/2020
 C241T C3037T C5694T C14408T C16293T A23403G C26625T A27678G C28320T GGG28881AAC

EPI_ISL_449327
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4711/2020
 A7468G C16362T

EPI_ISL_449328
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4712/2020
 C241T C3037T T3100G G10097A C14408T C16806T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_449329
 2020-04-27 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4713/2020
 G11083T C14805T T17247C G26144T

EPI_ISL_450825
 2020-04-27 2020-05-22
 Sweden hCoV-19/Sweden/20-14084/2020
 C241T C1059T C3037T C5157T C14408T C15048A A23403G G24368T G25563T

EPI_ISL_450826
 2020-04-27 2020-05-22
 Sweden hCoV-19/Sweden/20-14087/2020
 C241T C1059T C3037T C14408T G19735T A23403G G24368T G25563T

EPI_ISL_450827
 2020-04-27 2020-05-22
 Sweden hCoV-19/Sweden/20-14089/2020
 C241T C3037T C11416T C14396T C14408T T21802C C22208T A23403G GGG28881AAC

EPI_ISL_450830
 2020-04-27 2020-05-22
 Sweden hCoV-19/Sweden/20-51023/2020
 C241T C3037T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_450831
 2020-04-27 2020-05-22
 Sweden hCoV-19/Sweden/20-51044/2020
 C241T C3037T C14408T A23403G A23851G C26447T C26967T G27204T GGG28881AAC C28887T

EPI_ISL_451197
 2020-04-27 2020-05-23
 Uganda hCoV-19/Uganda/UG015/2020
 ATTA1- C21Y C241T C3037T C14408T A23403G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_451198
 2020-04-27 2020-05-23
 Uganda hCoV-19/Uganda/UG016/2020
 ATTAAAGG1- C241T C3037T G4656A C14408T A23403G C25046T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_451214
 2020-04-27 2020-05-24
 United States hCoV-19/USA/LA-EVTL053/2020
 C241T C1059T C1943T C3037T T6226C C10537T C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451216
 2020-04-27 2020-05-24
 United States hCoV-19/USA/LA-EVTL055/2020
 C241T C1059T C1943T C3037T G13812A C14408T T21391G C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451218
 2020-04-27 2020-05-24
 United States hCoV-19/USA/LA-EVTL057/2020
 C241T C1059T C1101T C3037T A4544T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451219
 2020-04-27 2020-05-24
 United States hCoV-19/USA/LA-EVTL058/2020
 C241T C1059T C1943T C3037T T6226C C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451220
 2020-04-27 2020-05-24
 United States hCoV-19/USA/LA-EVTL059/2020
 C241T C1059T C1943T C3037T T6226C C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451649
 2020-04-27 2020-05-25
 Poland hCoV-19/Poland/Pom8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1594T C3037T C4002T G10097A C10377T C13536T C14408T A23403G C23731T GGG28881AAC C29733T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_452061
 2020-04-27 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-204/2020
 C241T C3037T C7834T C14408T C21707T A23403G C23635T

EPI_ISL_452062
 2020-04-27 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-206/2020
 C241T C1059T C3037T T8788C C14408T G20887A A23403G G25563T G25785T G26951A

EPI_ISL_452064
 2020-04-27 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-209/2020
 C241T C3037T C7834T C14408T G15906A C21707T C21855T A23403G

EPI_ISL_452065
 2020-04-27 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-210/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452066
 2020-04-27 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-211/2020
 C241T C1059T C1302T C3037T C14408T A23403G G25563T

EPI_ISL_452067
 2020-04-27 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-212/2020
 C241T C3037T C7834T C14408T C21707T A23403G

EPI_ISL_452068
 2020-04-27 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-213/2020
 C241T C3037T C7834T G9479T C14408T C21707T C21855T A23403G

EPI_ISL_452069
 2020-04-27 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-218/2020
 C241T C3037T C7834T C14408T C21707T A23403G

EPI_ISL_452070
 2020-04-27 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-219/2020
 C241T C1059T C1302T C3037T C14408T C21108T A23403G G25563T G28077T

EPI_ISL_452216
 2020-04-27 2020-05-27
 India hCoV-19/India/NIV-QC-802/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C5826T C14408T C16915T C18032T A21137G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_452238
 2020-04-27 2020-05-27
 Sweden hCoV-19/Sweden/20-07908/2020
 C241T C3037T C4901T C14195A C14408T A23403G G24816A

EPI_ISL_453586
 2020-04-27 2020-05-27
 United Kingdom hCoV-19/England/NORW-E9261/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C7765Y C9943Y C13694Y C14408T A23403G G25055K G25429K G29742T

EPI_ISL_453587
 2020-04-27 2020-05-27
 United Kingdom hCoV-19/England/NORW-E9270/2020
 AT1- C241T C3037T A9749G C14408T A20860G A23403G A24232G G25429T G27788T

EPI_ISL_453588
 2020-04-27 2020-05-27
 United Kingdom hCoV-19/England/NORW-E92CB/2020
 ATTA1- C241T C3037T C9977A C13694T C14408T G17608T A23403G G24197T G25429T

EPI_ISL_453591
 2020-04-27 2020-05-27
 United Kingdom hCoV-19/England/NORW-E9304/2020
 C241T C313T G1820A C3037T C6541T C14408T A23403G G25352T GGG28881AAC A29242G

EPI_ISL_453594
 2020-04-27 2020-05-27
 United Kingdom hCoV-19/England/NORW-E935F/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_454213
 2020-04-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2416T C3037T G8371T G11083T C14408T A23403G G25563T C29144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454284
 2020-04-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7732T C14408T A23403G C28849T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454285
 2020-04-27 2020-05-28
 Portugal hCoV-19/Portugal/PT0562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C5575T G6443T C14408T A23403G G24077T G28960T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454620 MT533217
 2020-04-27 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T G2764T C3037T C4069T C14408T C15324Y C17801Y A23403G G25563T A27528M C27644Y T27792W CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_454621 MT533218
 2020-04-27 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1164/2020
 AT1-G C8782T C17747T A17858G C18060T G27777S T28144C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_454622 MT533219
 2020-04-27 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T809Y C8782T C17747T A17858G C18060T A18600W C25603T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_454644 MT532435
 2020-04-27 2020-05-28
 United States SARS-CoV-2/human/USA/VI-CDC-4411/2020
 C241T TTA516- C1059T C3037T G8137T C14408T A23403G G25563T T29710C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_454647 MT533203
 2020-04-27 2020-05-28
 United States SARS-CoV-2/human/USA/VI-CDC-4399/2020
 C241T C1059T C3037T C14408T A23403G G25563T T26609C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_454648 MT533197
 2020-04-27 2020-05-28
 United States SARS-CoV-2/human/USA/VI-CDC-4400/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26822T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_454651 MT533200
 2020-04-27 2020-05-28
 United States SARS-CoV-2/human/USA/VI-CDC-4408/2020
 C241T C1059T C3037T C14408T A23403G G25563T T29710C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_454652 MT533202
 2020-04-27 2020-05-28
 United States SARS-CoV-2/human/USA/VI-CDC-4413/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_454688 MT534338
 2020-04-27 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1268/2020
 ATT1- C6363T C8175M C9979T T10129Y T15771D C25692T

EPI_ISL_454689 MT534339
 2020-04-27 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1269/2020
 ATTA1- C6363T C9979T T10129Y C25692T

EPI_ISL_454833
 2020-04-27 2020-05-29
 India hCoV-19/India/SMSCOV175/2020
 C6312A G11083T C13730T C23929T C28311T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_455016 MT539174
 2020-04-27 2020-05-29
 India SARS-CoV-2/human/IND/GBRC119/2020
 T771C C8782T G11306A G22468T C25513T T28144C G28878A G29742A

EPI_ISL_455102
 2020-04-27 2020-05-29
 Sweden hCoV-19/Sweden/20-07896/2020
 C241T C1059T C3037T C14408T A23403G G24368T A24695G G25455T G25563T G28931A

EPI_ISL_455103
 2020-04-27 2020-05-29
 Sweden hCoV-19/Sweden/20-14013/2020
 C241T AAGTCATTT686- C1059T C3037T C7600T G13126T C14408T A23403G G24368T G25563T

EPI_ISL_456463 MT612154
 2020-04-27 2020-06-02
 Australia SARS-CoV-2/human/AUS/VIC1491/2020
 T10K C241T C1059T C3037T C6651T C6896T C14408T C18555T C18744T G20580T T23119A A23403G G25563T C25572T

EPI_ISL_457245
 2020-04-27 2020-06-02
 United Kingdom hCoV-19/England/EXET-136A7B/2020
 C241T C3037T C4784T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_458032
 2020-04-27 2020-06-03
 India hCoV-19/India/CCMB_C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8917T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458148
 2020-04-27 2020-06-03
 Brazil hCoV-19/Brazil/PA164684-IEC/2020
 C241T C1060T A2031T C3037T C12374T C14408T A23403G C26256T T27299C GGG28881AAC T29148C

EPI_ISL_459942
 2020-04-27 2020-06-05
 India hCoV-19/India/MaxCov0040_CSIR-IGIB/2020
 C1707Y C6310M C6312A G11083T G12685K C13730T C14922Y C15045M A15435R G20287K C23929T T24622Y C28311T

EPI_ISL_460788
 2020-04-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16308T T18417C C20148T A23403G C27213T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461041
 2020-04-27 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5506T C14408T A23403G G25563T G26049T G28817T A29433G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461184
 2020-04-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6865T C14408T G16065T G18816T T22693C A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461198
 2020-04-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C19718T A23403G C23731T T25403C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461206
 2020-04-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T2586C C3037T C4113T C6027T C6555T C14408T G18281A A20755C A23403G G25563T G25784T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461208
 2020-04-27 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C2509T C3037T G12311T C12357T C14408T C20148T A23403G C27925A G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461232
 2020-04-27 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C539T C3037T C10582T C14408T A23403G A24862G C25867T G29751T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461274
 2020-04-27 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G C24865T C26125T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461303
 2020-04-27 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G G19726T A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461328
 2020-04-27 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3134A C9924T G11596T C13011T C14408T G20568A A23403G A26530G G28378T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461481 MT576038
 2020-04-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC153a/2020
 C241T C3037T C3634T C14408T C15324T A23403G

EPI_ISL_461482 MT576034
 2020-04-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC153b/2020
 C241T C3037T C8782T G22468T T28144C G28878A

EPI_ISL_462302
 2020-04-27 2020-06-08
 Singapore hCoV-19/Singapore/184/2020
 C6310A C6312A G11083T C13730T G13988R G17847R C19524T G22225T C23185T C23929T G25906T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462321
 2020-04-27 2020-06-08
 Singapore hCoV-19/Singapore/203/2020
 C6310A C6312A G11083T C13730T C18687Y C19524T C21914Y C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462322
 2020-04-27 2020-06-08
 Singapore hCoV-19/Singapore/204/2020
 C3787T C6310A C6312A G11083T C11173T C13730T C19524T C23185T C23929T G24842A C28311T AAAAAAAAAAAA29892-

EPI_ISL_462736 MT585014
 2020-04-27 2020-06-08
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20654/2020
 C241T C1059T C3037T C14408T A23403G G25563T T27134Y

EPI_ISL_463098 MT609562
 2020-04-27 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0295/2020
 C241T C619T C1059T C3037T C14408T A14912G A18239G A23403G G25563T

EPI_ISL_463099 MT609563
 2020-04-27 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0296/2020
 ATTAAAGG1- C241T C619T C1059T C3037T C14408T A14912G A18239G A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_463388 MT642412
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S898/2020
 ATTAAAGGTTTAT1- A4236G G11083T C14805T T25655C C25904T G26144T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463394 MT642255
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S904/2020
 ATTAAAGGTT1- C241T C3037T C14408T C15933T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463395 MT642165
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S905/2020
 AT1- C241T C3037T A5538T C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463396 MT642311
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S906/2020
 ATTAAAGGTTTAT1- G1401A A3190G C8782T C17747T A17858G C18060T T28144C C28603T C29420T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463397 MT642427
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S907/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T A4764G C14408T A23403G G25563T T25969C C27804T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463398 MT642138
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S908/2020
 AT1- C241T C1059T C3037T A4764G C14408T A23403G G25563T T25969C C27804T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463399 MT642266
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S909/2020
 ATTAAAGGTTT1- C241T C3037T C14408T G16813A A23403G GGG28881AAC C29721A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463400 MT642410
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S910/2020
 ATTAAAG1- C8782T C17747T A17858G C18060T T28144C G28362C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463402 MT642299
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S912/2020
 AT1- C8782T C17747T A17858G C18060T C21575T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_463403 MT642422
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S913/2020
 AT1- C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463406 MT642144
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S916/2020
 AT1- C241T C1059T C3037T T3306C A4764G C14408T A23403G C23996T G25563T T25969C C27804T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463407 MT642258
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S917/2020
 ATTAAAG1- G1401A C8782T C17747T A17858G C18060T T28144C T28582C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463432 MT642334
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S942/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463433 MT642184
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S943/2020
 ATT1- C241T C1059T C3037T G11083T C13424T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_463434 MT642352
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S944/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T G11083T C14408T A23403G G25563T C27804T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463435 MT642401
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S945/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T A23403G G25563T C27804T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463436 MT642116
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S946/2020
 AT1- C241T C1059T C3037T G4975T C14408T G15384T A23403G G25523T G25563T T27869C T29194C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463439 MT642420
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S949/2020
 ATTAAAGGTT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463440 MT642206
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S950/2020
 ATT1- G354A C2070T C8782T C14605T C17747T A17858G C18060T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463441 MT642158
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S951/2020
 ATTAAAGGTTT1- G354A C2070T A7050C C8782T C17747T A17858G C18060T T19839C G24075A A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463442 MT642411
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S952/2020
 ATTAAAGGTTTAT1- G1401A C8782T T13438C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463443 MT642389
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S953/2020
 ATTAAAG1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463481 MT642169
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S991/2020
 ATTAAAGGTTTAT1- C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463496 MT642283
 2020-04-27 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1006/2020
 ATTAAAGGTTTAT1- G1401A C3717T C8782T C9746T C17747T A17858G C18060T T28144C C28868T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463748
 2020-04-27 2020-06-10
 Cyprus hCoV-19/Cyprus/008/2020
 C241T C3037T C3411T C14408T A23403G C24904T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_465526
 2020-04-27 2020-06-11
 United Kingdom hCoV-19/England/20189026604/2020
 C241T C3037T C9870T A12458G C14408T A19338R A23403G

EPI_ISL_467361
 2020-04-27 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2769/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2842T C3037T C3984T G12202T T13442G G14250T C14408T G15313T A23403G T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_467362
 2020-04-27 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2842T C3037T C3984T G12202T C14408T G15313T A23403G T27299C GGG28881AAC T29148C AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_467363
 2020-04-27 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2842T C3037T C3984T G12202T C14408T G15313T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467365
 2020-04-27 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2811/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G T25815C T27299C G27459T G27670T GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467366
 2020-04-27 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12053T C12242T C14408T A23403G G25088T GGG28881AAC GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467367
 2020-04-27 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2822/2020
 AT1- C241T C3037T T3793C C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467778
 2020-04-27 2020-06-15
 Romania hCoV-19/Bucuresti/ChVir7244/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T A20268G A20634G A23403G C25703T C28045T G29747T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_467779
 2020-04-27 2020-06-15
 Romania hCoV-19/Bucuresti/ChVir7245/2020
 ATTAAAGGTT1- C241T G2534T C3037T C14408T C15180T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_468254 LR824181 LR860793
 2020-04-27 2020-06-16
 Switzerland 120178
 C241T C3037T C14408T C15251T C15324T C16293T T16374C T19299Y C19328Y T19355Y A23403G G29402T

EPI_ISL_468257 LR824188 LR860799
 2020-04-27 2020-06-16
 Switzerland 120182
 C241T C3037T G13897T C14408T T19331Y C19502Y A21171R C21263Y A21489R A23403G C24621T T26038C G26550A GGG28881AAC

EPI_ISL_468481
 2020-04-27 2020-06-16
 United States hCoV-19/USA/CA-CZB-1536/2020
 A1- C241T A1189G C3037T G10793T C14408T C18877T A23403G G25563T C25782T G27514T G28028T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469845
 2020-04-27 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-101754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14793T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471408
 2020-04-27 2020-06-20
 Democratic Republic of the Congo hCoV-19/DRC/4132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6285T G7936T C8772T C9491T C14408T C15324T C23191T A23403G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_471409
 2020-04-27 2020-06-20
 Democratic Republic of the Congo hCoV-19/DRC/4141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T G3052T C8293T C14408T T18488C A23403G G24197T T24739C A26530G C29708T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_471410
 2020-04-27 2020-06-20
 Democratic Republic of the Congo hCoV-19/DRC/4145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5102T G11083T C14408T C15324T A16085G A23403G ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_471720
 2020-04-27 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20696/2020
 C241T C1059T C3037T C14408T C18744T A23403G G25563T C26625T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_471721
 2020-04-27 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20697/2020
 C241T C1059T C3037T C5581T G8368A G11605C C14408T C17410T A23403G G25563T T27285C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_471722
 2020-04-27 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20698/2020
 C241T C1059T C3037T C5183T C10790T C14408T A23403G G25563T AA29902-

EPI_ISL_471724
 2020-04-27 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20700/2020
 C241T C1059T G1265A C3037T C14262T C14408T G16647T A23403G G25563T C27847T

EPI_ISL_471731
 2020-04-27 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20707/2020
 C241T C1059T C3037T A4903C C14408T C23248T A23403G G25563T C28695T

EPI_ISL_471732
 2020-04-27 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20708/2020
 C241T C1059T C3037T G4678K A4903C C14408T T21189Y C23248T A23403G G25563T C28695T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_473287
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1633A7/2020
 A1- C241T C3037T T5573C C6380T G11801A C14408T T18768C T19839C A23403G G24586T G25552T GGG28881AAC G28979T T29607C

EPI_ISL_473291
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1633E3/2020
 C241T C3037T G4504A G11801A C14408T T16671C T19839C A23403G G25552T GGG28881AAC

EPI_ISL_473790
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB3654/2020
 C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_473855
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5780/2020
 C241T C3037T C7321T C10798A T13716C C13862T C14408T A23403G C28836T C29171T

EPI_ISL_473856
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5792/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_473857
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5793/2020
 C241T C3037T C10798A C13862T C14408T A23403G G28314T C28836T

EPI_ISL_473858
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5797/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_473859
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5799/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_473860
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5806/2020
 C241T C3037T C10798A C13862T C14408T T16248G A23403G G24821T C25047T G28460T C28836T

EPI_ISL_474011
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1638B7/2020
 ATTA1- C241T C3037T C14408T A23403G A24774W GGG28881AAC G29777T

EPI_ISL_474062
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163C60/2020
 ATTA1- C241T C1059T C3037T C10376Y G11609T C14408T G18583T A23403G G23868T G24368T G25563T G27390C G29773T

EPI_ISL_474141
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1641CA/2020
 ATTA1- C241T G1589R C3037T C14408T A23403G G25429T G29474T

EPI_ISL_474592
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-35F23/2020
 ATTAAAGGTTT1- C241T C3037T T4186C G11801A T11836C C14408T T19839C A23403G G25552T C27641T GGG28881AAC A29526T

EPI_ISL_475009
 2020-04-27 2020-06-23
 Israel hCoV-19/Israel/CVL-n-12003/2020
 C241T C1059T C3037T T12056A C14408T G21724T A23403G G25555T G25563T

EPI_ISL_475247
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/England/PORT-2CFEF2/2020
 C241T C3037T C14408T T19839C A23403G C25688T C26681T GGG28881AAC

EPI_ISL_475371
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C3A0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475372
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C3B08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T C14925T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475402
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C7E1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475407
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C86A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21614T A23403G G27289T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475413
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C8EEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12514T C14408T C16101T A18616G A23403G GGG28881AAC G29779C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475415
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C8FBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27434T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475419
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C9319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8201A C14408T G21778A A22019G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475424
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C999F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10642T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475425
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C9A23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4720T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475429
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CA187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475471
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CEC37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T C26735T T28098C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475484
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CFD42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475485
 2020-04-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CFE5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476832
 2020-04-27 2020-06-26
 Turkey hCoV-19/Turkey/KOU-MG/2020
 C241T A2015G C3987T CA4406AC A20268G A23403G

EPI_ISL_476992
 2020-04-27 2020-06-27
 Belgium hCoV-19/Belgium/rega-0427424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T T26159C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477192
 2020-04-27 2020-06-29
 Singapore hCoV-19/Singapore/495/2020
 C6310A C6312A G11083T C13730T C17766T C19524T T23042C C23185T C23929T A25657G C28311T A28799G

EPI_ISL_477635 MT679159
 2020-04-27 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0419/2020
 ATT1- C241T C1059T C3037T C14408T G20991T A23403G G25563T C25585T G28899T

EPI_ISL_478937
 2020-04-27 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0B0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1884T C3037T C14408T G21724T A23403G C24096T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_478967
 2020-04-27 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0E05/2020
 C241T G2144A C3037T T6492C C14408T C19170T G19509A A23403G GGG28881AAC AAA29901-

EPI_ISL_478983
 2020-04-27 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0F8A/2020
 A1- C241T C3037T C6723T G7960A C14408T C20762T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_478997
 2020-04-27 2020-06-30
 United Kingdom hCoV-19/England/OXON-B110B/2020
 ATTAAAGGTTTA1- C241T C1884T G2585A C3037T C6723T C14408T A23403G GGG28881AAC AAAAAAAA29896-

EPI_ISL_479225
 2020-04-27 2020-06-30
 United Kingdom hCoV-19/England/SHEF-C72D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479484
 2020-04-27 2020-06-30
 Singapore hCoV-19/Singapore/528/2020
 C6310A C6312A T8672C G11083T C13730T C19524T C23929T C28311T

EPI_ISL_479490
 2020-04-27 2020-06-30
 Singapore hCoV-19/Singapore/534/2020
 C2973T C6310A C6312A C6317T G11083T C13730T G14548A C19524T A20458C C23929T C28311T

EPI_ISL_479502
 2020-04-27 2020-06-30
 India hCoV-19/India/NIV-15768/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C5700A C7600T G22708A A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479503
 2020-04-27 2020-06-30
 India hCoV-19/India/NIV-15879/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C4679T C5700A C14408T A23403G T23815C GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479504
 2020-04-27 2020-06-30
 India hCoV-19/India/NIV-15941/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T A23403G G26167T GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480404 MT772571
 2020-04-27 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C5183T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480406 MT772573
 2020-04-27 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C5183T C14408T T15354C G17197A C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480407 MT772574
 2020-04-27 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C5183T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480408 MT772575
 2020-04-27 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C5183T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481969
 2020-04-27 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12E3B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C14408T A23403G G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482058
 2020-04-27 2020-07-03
 United Kingdom hCoV-19/England/TBSD-2488FEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5391G C5512T C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482065
 2020-04-27 2020-07-03
 United Kingdom hCoV-19/England/TBSD-248909C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4300T C6363Y C14408T C15237T C15601Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482144
 2020-04-27 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-100F7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C6696T C11001T T22729C C25844T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482383
 2020-04-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-118/2020
 C241T C3037T C14408T A20268G A23403G C29370G

EPI_ISL_482384
 2020-04-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-120/2020
 C241T C3037T C11563T C11832T C14408T C16616T C16952T C17028T C18877T A23403G G24550A C25276T G25563T

EPI_ISL_482385
 2020-04-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-121/2020
 C241T C3037T C14408T A20268G A23403G T26569G C29370G

EPI_ISL_482386
 2020-04-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-122/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_482387
 2020-04-27 2020-07-03
 United States hCoV-19/USA/OR-PROV-123/2020
 C3411T A4236G G11083T C14805T T25655C G26144T

EPI_ISL_483272
 2020-04-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0637-SAN/2020
 ATT1- C241T AAGTCATTT686- C3037T A4584G C9438T C14408T C16616T A20268G A23403G C28854T

EPI_ISL_483395
 2020-04-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0845-IPL/2020
 ATTA1- C241T C3037T G3871A T6039C C14408T A20268G A23403G T24076C G28790A C28854T G29759T

EPI_ISL_483409
 2020-04-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0907-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5869T C14408T G18106T A20268G C22323T A23403G T24076C C28854T G29300T

EPI_ISL_483413
 2020-04-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0918-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G C21621T A23403G G23793T G25785T C28854T

EPI_ISL_483417
 2020-04-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0926-IPL/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A20268G C21621T A23403G G23793T G25785T C28854T

EPI_ISL_483418
 2020-04-27 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0928-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T AAGTCATTT686- C3037T A4584G C9438T C14408T C16616T A20268G A23403G C28854T

EPI_ISL_484270
 2020-04-27 2020-07-08
 United Kingdom hCoV-19/England/NORT-2968C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T950C C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484271
 2020-04-27 2020-07-08
 United Kingdom hCoV-19/England/NORT-296920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24390T C27513T T27534C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484273
 2020-04-27 2020-07-08
 United Kingdom hCoV-19/England/NORT-296AB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15960T A23403G C27092T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484282
 2020-04-27 2020-07-08
 United Kingdom hCoV-19/England/NORT-296FA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C17463T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484283
 2020-04-27 2020-07-08
 United Kingdom hCoV-19/England/NORT-297190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T950C C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484393
 2020-04-27 2020-07-08
 United Kingdom hCoV-19/England/NOTT-112556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C12116T C14805T A16687G T17247C G20352A C21859T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484396
 2020-04-27 2020-07-08
 United Kingdom hCoV-19/England/NOTT-112583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12138T C14408T C20930T A23403G C26366T GGG28881AAC C29160T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485042
 2020-04-27 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26492470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2110T C3037T A5875G C14408T A23403G G25563T C27964T C28236T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486153 MT750361
 2020-04-27 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3877K G4409S G13571K C14408T G16508K G18898T G22899K C22993Y A23122R A23403G G24933K T25902W T25908W G25913S G28857K GGG28881AAC C29541Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486160 MT750368
 2020-04-27 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1848/2020
 ATTAAAGGT1- C241T C3037T C3738T C14408T T15669C A20268G A22171G A23122R A23403G T25902W T25908W G25913S G29734C

EPI_ISL_486161
 2020-04-27 2020-07-10
 United States hCoV-19/USA/CA-CZB-1849/2020
 A1- C241T G1323T C3037T C14408T G18898T C21772T A23122R A23403G GGG28881AAC

EPI_ISL_486162 MT750369
 2020-04-27 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C3037T G7298K C14408T G18898T C21772T A23122V A23403G T25902W T25908W G25913S GGG28881AAC AAA29901-

EPI_ISL_486163 MT750370
 2020-04-27 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C912T C1059T G1681T A2165G C3037T C14408T G22899S A22904V A23122R A23403G G25563T T25902W T25908W G25913S G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486164 MT750371
 2020-04-27 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1855/2020
 ATTAAAGGTTTATACCT1- C241T C3037T G4300K G6532T C14408T C18395T G18898T C21772T G22346K A23122R A23403G GGG28881AAC C29870M

EPI_ISL_486165 MT750372
 2020-04-27 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C3037T T4779C C14408T A20268G A23122V A23403G T25902W T25908W G25913S

EPI_ISL_486310 MT750472
 2020-04-27 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2067/2020
 ATTAAAGGTTTATACC1- C241T C3037T T4346Y C8327T C14408T G14874T A23122R A23403G A24862G T25908W G25913S G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486311
 2020-04-27 2020-07-10
 United States hCoV-19/USA/CA-CZB-2068/2020
 ATTAAAG1- A30R C241T C3037T C8327T C14408T A22151G A23403G A24862G

EPI_ISL_486415
 2020-04-27 2020-07-10
 Latvia hCoV-19/Latvia/032/2020
 C241T C955T C1426T C3037T C5339T C7765T C14408T C17690T C18877T A23403G G25563T G28851C

EPI_ISL_486416
 2020-04-27 2020-07-10
 Latvia hCoV-19/Latvia/033/2020
 C241T C3037T C7765T A10291G C14408T G15780A G18412T T19839C C21575T T22238G A23403G G25471T G28685T GGGG28881AACT

EPI_ISL_486421
 2020-04-27 2020-07-10
 Latvia hCoV-19/Latvia/038/2020
 C241T C3037T TG13575CT C14408T A23403G C25831T GGG28881AAC

EPI_ISL_487666
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T A7468G C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487669
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T C16806T A23403G C23731T G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487680
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T A7468G C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487736
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T G9116K C12915T C14408T A20268G A23403G G27987T C28775T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487763
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3737T C5934T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487766
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T C29525T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487768
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C9286T C10798A C13862T C14408T C22713Y A23403G C28836T C29311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487772
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C G10097A C14408T C17821T G18255T G18394T A23403G C23731T G26775T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487780
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24390T C25433T G29440T AGT29746- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487786
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A A12788G C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487793
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C12915T C14408T A20268G A23403G G27987T C28775T C28854T G29395T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487849
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T C16806T A23403G C23731T G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487854
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB3575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25433T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487862
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7162Y C7749Y C9223T A10995R C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487873
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T A7468G G11273A C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487890
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C G10097A C14408T C17821T G18255T G18394T A23403G C23731T G26775T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487891
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G G28048T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487906
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7814C C14408T G18213T A18818G A23403G G25563T G28827K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487921
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5694T C14408T C16293T A23403G G24328T C26625T A27678G C28320T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487964
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C12915T C14408T A20268G A23403G G27987T C28775T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487976
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C854T ATG1605- G11161T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487986
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T G18756T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487992
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A603C C3037T T3745C C5055T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488009
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-2973B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1387Y C3037T C7851T C13255Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488014
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-2969E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3231T C9857T C14408T G19925T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488108
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-296D42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C7056T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488152
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-296E30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C7056T G13812R C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489187
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FCDF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C14583T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489337
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FCD1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C7072Y C14408T C17502T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489359
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FCE2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5719C G11083T C11195Y C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489378
 2020-04-27 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FCD79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489884 EPI_ISL_491080
 2020-04-27 2020-07-14
 Romania hCoV-19/Romania/ROSV_4995/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T T2593C C2880T C3037T C14408T A20268G A23403G C23481T C27509T G29825A AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827T

EPI_ISL_489885 EPI_ISL_491081
 2020-04-27 2020-07-14
 Romania hCoV-19/Romania/ROSV_4996/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C4582T G6793T C14408T C17410T A20268G A23403G G27676C C27707T A29827T G29830T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_489886 EPI_ISL_491082
 2020-04-27 2020-07-14
 Romania hCoV-19/Romania/ROSV_5000/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T G17280T A20268G A23403G G24751T A29827T G29830T TATCCCCATGTGATTTTAATAGCTTCTTAGGAG29832- A29866C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_490623
 2020-04-27 2020-07-15
 United Kingdom hCoV-19/England/SHEF-CC158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A21137G A23403G C25350T C25721T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490633
 2020-04-27 2020-07-15
 United Kingdom hCoV-19/England/SHEF-CFC54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491115
 2020-04-27 2020-07-16
 Germany hCoV-19/Germany/Br-ZK-1/2020
 T13C C241T C1059T C3037T T8963C C14408T G16846T C21781T A23403G T24856C G25563T C29415T

EPI_ISL_491136
 2020-04-27 2020-07-16
 Oman hCoV-19/Oman/C-7102/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C13694T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491556
 2020-04-27 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB6443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C3787T A7468G C16362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491593
 2020-04-27 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB3582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491680
 2020-04-27 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB3595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T26715K G26720R C28854T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492232
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853E09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1707T C3037T C4039T T8624G C14408T A23403G C28854T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492239
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853F15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2933T C3037T C6651T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492264
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-185457C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1541T C3037T C3096T C12459T T12523C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492270
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853E90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1670T C3037T T3772C C14408T A23403G T28046C C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492294
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1854002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7092C G10097A C14408T C16997T A23403G C23731T G28580T C28687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492299
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853F42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2933T C3037T C6651T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492300
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853E63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2113T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492349
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853EBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C307T C1670T C3037T T3772C C14408T A23403G T28046C C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492370
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853D75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3743T C7086T C14408T C18647T A23403G G25456K G27147T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492372
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853EEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492390
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853F24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2933T C3037T C6651T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492392
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853D57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7037T C14408T A23403G G25455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492404
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853B7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492406
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853E81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T T14700C C19170T G19509A T23221G A23403G C26600Y G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492417
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853EDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1069T C3037T C5512T A10225G C14408T T20811C G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492433
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853FCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T C14408T C17249T G17722T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492448
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853FF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492460
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/NORT-299CF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T T27285C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492465
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/NORT-299B45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7753A C14408T A23403G GGG28881AAC G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492466
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/NORT-299AB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T3909C G6373T G11083T A11947G C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492475
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/NORT-299D30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7860T T11177C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492477
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/NORT-299A93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T950C C3037T C5392T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492478
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/NORT-299AA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T26715K G26720R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492877
 2020-04-27 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C2D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T194G C241T C3037T C14408T C18570T C19170T G19509A A23403G GGG28881AAC C29535T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494165
 2020-04-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-167E57/2020
 ATTAAAGGT1- C241T C3037T G11083T C14408T A23403G A25575C AAAA29900-

EPI_ISL_494376
 2020-04-27 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1124/2020
 C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494384
 2020-04-27 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1138/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G C23638T T26960C GGG28881AAC

EPI_ISL_494389
 2020-04-27 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1815G C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494393
 2020-04-27 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494396
 2020-04-27 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G1135T C3037T G14229A C14408T C18115T A20268G A23403G G26268T C26735T C28854T

EPI_ISL_494397
 2020-04-27 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1154/2020
 ATT1- C241T C3037T C5171T C14408T A20268G G21867T A23403G C27903T C28854T

EPI_ISL_494399
 2020-04-27 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1156/2020
 ATTAAAGGTTTATACC1- C241T T1438C C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494425
 2020-04-27 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494456
 2020-04-27 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1247/2020
 ATTAAA1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494463
 2020-04-27 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1262/2020
 AT1- C241T C1457T C3037T C6848T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494522 MT786821
 2020-04-27 2020-07-22
 United States SARS-CoV-2/human/USA/MI-QDX-183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C20970T A23403G G25563T G28003T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494523 MT786822
 2020-04-27 2020-07-22
 United States SARS-CoV-2/human/USA/NC-QDX-171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A16839G C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494525 MT786824
 2020-04-27 2020-07-22
 United States SARS-CoV-2/human/USA/NC-QDX-173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A16839G C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494526 MT786825
 2020-04-27 2020-07-22
 United States SARS-CoV-2/human/USA/NC-QDX-174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10458T G11083T C11916T C14408T C18693A C18998T A23403G G25563T G26828T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494543 MT786842
 2020-04-27 2020-07-22
 United States SARS-CoV-2/human/USA/TX-QDX-188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T8041C C14408T G22225T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494675
 2020-04-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1587/2020
 ATTAA1- C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_494682
 2020-04-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1596/2020
 ATTAAAGGT1- C21T C241T C3037T C14184T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494690
 2020-04-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1619/2020
 ATTA1- C241T C1059T C3037T C12809T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_494701
 2020-04-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C4455T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_494702
 2020-04-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1632/2020
 ATTA1- C241T C3037T C14408T T15606C G16475A A20268G A23403G G24095T C28854T

EPI_ISL_494712
 2020-04-27 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_495097
 2020-04-27 2020-07-22
 United Kingdom hCoV-19/England/BRIS-1854776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1541T C3037T C3096T C12459T T12523C C14408T G19999K A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495104
 2020-04-27 2020-07-22
 United Kingdom hCoV-19/England/BRIS-18547EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C1912T G13445A C13945T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495107
 2020-04-27 2020-07-22
 United Kingdom hCoV-19/England/BRIS-1854767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5512T C14408T T20811C G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495110
 2020-04-27 2020-07-22
 United Kingdom hCoV-19/England/BRIS-18547A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5512T C14408T T20811C G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495112
 2020-04-27 2020-07-22
 United Kingdom hCoV-19/England/BRIS-1854785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5512T C14408T T20811C G21724T A23403G C24130Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495114
 2020-04-27 2020-07-22
 United Kingdom hCoV-19/England/BRIS-1854794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5512T C14408T T20811C G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495119
 2020-04-27 2020-07-22
 United Kingdom hCoV-19/England/BRIS-18547B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C5512T C7081Y C14408T C15774Y T20811C G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495567
 2020-04-27 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S001043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3593T C3653T C14408T A23403G G25563T G28882T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_496352
 2020-04-27 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G1135T C3037T C8655T C13774T C14408T C18115T A20268G A23403G G25049T C28854T

EPI_ISL_496353
 2020-04-27 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1692/2020
 AT1- C241T C346T C3037T C10332T C14408T A20268G A23403G C28854T

EPI_ISL_496354
 2020-04-27 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_496355
 2020-04-27 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C4423T C14408T A19508C A20268G A23403G C28854T

EPI_ISL_498714 MT806775
 2020-04-27 2020-07-27
 United States SARS-CoV-2/human/USA/GA-QDX-233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C601T C683T C3037T C8389T C8937T C9169T G11083T A12666G G13900T C14408T C14786T A23403G G25563T G27915A C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498715 MT806776
 2020-04-27 2020-07-27
 United States SARS-CoV-2/human/USA/GA-QDX-234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C601T C3037T C8389T G11083T T12157C C13335T C14408T A23403G G25563T G26803T G27915A C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498716 MT806777
 2020-04-27 2020-07-27
 United States SARS-CoV-2/human/USA/GA-QDX-239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8389T C14408T G18997A A23403G G25563T C27595T G27915A C28550A G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498717 MT806778
 2020-04-27 2020-07-27
 United States SARS-CoV-2/human/USA/GA-QDX-240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8389T C14408T G14743T G18546T A23403G G25563T G27915A C28550A G28904T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498744 MT806806
 2020-04-27 2020-07-27
 United States SARS-CoV-2/human/USA/WA-QDX-235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A12557C C14408T A23403G A23534T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498745 MT806807
 2020-04-27 2020-07-27
 United States SARS-CoV-2/human/USA/WA-QDX-236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6329C C8316T C14408T A23403G G25563T C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498746 MT806808
 2020-04-27 2020-07-27
 United States SARS-CoV-2/human/USA/WA-QDX-237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7113T C14408T G16912T A23403G G25563T G29553A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498747 MT806809
 2020-04-27 2020-07-27
 United States SARS-CoV-2/human/USA/WA-QDX-238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500622
 2020-04-27 2020-07-29
 Australia hCoV-19/Australia/NSW2116/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C6312A A9424T G11083T C13730T A18945G C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_507006
 2020-04-27 2020-08-03
 Singapore hCoV-19/Singapore/761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6128T C6310A C6312A A8509G C9891T C11074T G11083T C13730T C19524T G22201T C23929T C26882T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508357
 2020-04-27 2020-08-04
 India hCoV-19/India/IK27/2020
 C241T C823T G2185A C3037T G3351T G10642T C14408T A23403G G29868A

EPI_ISL_508358
 2020-04-27 2020-08-04
 India hCoV-19/India/IK28/2020
 C241T C3037T A8252G C14408T A23403G G28221T G29868A

EPI_ISL_508433
 2020-04-27 2020-08-04
 India hCoV-19/India/MW3/2020
 ATTAAAGGTTTATACCTT1- G23T C6312A T10411C G11083T C13730T C19070T C23929T C25276T C28311T G29868A

EPI_ISL_508439
 2020-04-27 2020-08-04
 India hCoV-19/India/MW5/2020
 ATTAAAGGTTTATACCTT1- G23T C1281T C6312A G11083T C13730T C23929T C28311T G29868A

EPI_ISL_508440
 2020-04-27 2020-08-04
 India hCoV-19/India/MW8/2020
 ATTAAAGGTTTATACCTTCCCA1- C6312A T10204C T10411C G11083T C13730T C19070T C23929T C25276T C28311T G29868A

EPI_ISL_509060
 2020-04-27 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15868T A20268G G23311T A23403G C29370G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509066
 2020-04-27 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15957T A16403G A23403G G25302T G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509692 MT844040
 2020-04-27 2020-08-05
 United States SARS-CoV-2/human/USA/UT-CDC-9755/2020
 C241T C3037T C4672T C5184T C14408T G17122T C18457T A19334G A23403G A25121T C26256T C29668T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_512821 MT872501
 2020-04-27 2020-08-11
 Sierra Leone SARS-CoV-2/human/SLE/KGH-G-8790/2020
 ATTAAA1- C8782T G9802A C10818T G13900T T14394A A16512G C19951T G22468T G26428T G26849T T27374C G27703T C27942T T28144C G28878A C28887T G29742A

EPI_ISL_514430 MT883500
 2020-04-27 2020-08-14
 Serbia SARS-CoV-2/human/SRB/UE06-28-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A15972G C19718T A23403G T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516687 MT913122
 2020-04-27 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0358/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C C29077T G29540A

EPI_ISL_516688 MT913123
 2020-04-27 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0359/2020
 AT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C C29077T G29540A

EPI_ISL_516691 MT913126
 2020-04-27 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0362/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C C29077T G29540A

EPI_ISL_518851
 2020-04-27 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-3561/2020
 ATTAAAGGTTTATACCTTCCCAG1- T25C C241T C3037T G10265A C14408T C16293T G17014T T18663C C20117T A23403G G23426T GGG28881AAC ATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29833-

EPI_ISL_518852
 2020-04-27 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-3562/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G10265A C14408T C16293T T18663C C20117T A23403G G23426T G25534T GGG28881AAC G29810T TAATAGCTTCTTAGGAG29848- GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_518853
 2020-04-27 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-3563/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A G12940T C14408T C16293T T20064C A23403G GGG28881AAC C29640T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_518854
 2020-04-27 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-3564/2020
 ATTAAAGGTTTATACCTTCCCAG1- G24C C241T C3037T G10265A C14408T C16293T T18663C C20117T A23403G G23426T GGG28881AAC G29810T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_520673
 2020-04-27 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L2004035133/2020
 C884T G1397A G8653T G11083T C11950T A19073G C23277T G27915T T28688C C28868T C29077T G29742T

EPI_ISL_520740
 2020-04-27 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920702211/2020
 G216T C3099A T3136C C6026T C8782T G12479A C14599T T28144C G28878A G29140C G29742A

EPI_ISL_522683 MT973323
 2020-04-27 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C4540T A4624G C8782T T9477A C14805T G25979T G26062T T28144C C28311T C28657T C28863T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_523068
 2020-04-27 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-2-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G6352A A10829G G12795A C17410T G22344A A22920T T29685C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523070
 2020-04-27 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-2-14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G6352A A10829G G12795A C17410T G22344A A22920T T25518C T29685C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523072
 2020-04-27 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-2-19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C9870T G12795A C13499T C17410T C18171T A22920T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523073
 2020-04-27 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-2-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G6352A G12795A C17410T A22920T T29685C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523075
 2020-04-27 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-2-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G6352A G12795A C17410T A22920T T29685C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523085
 2020-04-27 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-2-6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G6352A A10829G G12795A C17410T G22344A A22920T T25518C T29685C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523089
 2020-04-27 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-2-7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G12795A C17410T T23018C A25492G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523090
 2020-04-27 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-2-8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G12795A C17410T A22920T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524052
 2020-04-27 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-9178V/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A30G C241T C3037T C4012T T10570C C14408T G17938A C19018T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524584
 2020-04-27 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AEA23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T C28866T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524586
 2020-04-27 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE08B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2775G C3037T G4255T C13568T C14235T C14408T A20355G A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524594
 2020-04-27 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE1E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T C3037T C6990T C11674T C14408T A23403G G25650T C26256T C29200T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524600
 2020-04-27 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T C14408T G16206T A23403G GGG28881AAC C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526472
 2020-04-27 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB3584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527679
 2020-04-27 2020-09-04
 United States hCoV-19/USA/MN-CDC-6227/2020
 C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528382
 2020-04-27 2020-09-07
 India hCoV-19/India/HR-THSTI2010A/2020
 AT1- T1227C C1281T C1758T C4543Y T4885C C6312A G11083T C13730T C23929T C28311T A28676M GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_528383
 2020-04-27 2020-09-07
 India hCoV-19/India/HR-THSTI2010B/2020
 ATTA1- T1227C C1281T C1758T C4543Y T4885C C6312A G11083T C13730T A14207M C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_528384
 2020-04-27 2020-09-07
 India hCoV-19/India/HR-THSTI2010C/2020
 ATTA1- T1227C C1281T C1758T C4543Y T4885C C6312A G11083T C13059Y C13730T A14207M C23929T G27806T C28311T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_528385
 2020-04-27 2020-09-07
 India hCoV-19/India/HR-THSTI2010D/2020
 A1- T1227C C1281T C1758T C4543Y T4885C C6312A T9464K A9469M G9473R G11083T C13730T A14207M G14464R C23929T C28311T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_529689
 2020-04-27 2020-09-10
 United Kingdom hCoV-19/Scotland/EDB3599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530079
 2020-04-27 2020-09-10
 Spain hCoV-19/Spain/MD-LP82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28377T GGG28881AAC ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530207 MT997729
 2020-04-27 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T T1901C C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_534311
 2020-04-27 2020-09-13
 Brazil hCoV-19/Brazil/SP-309/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12053T C14408T T14498A C16466T A23403G G25088T GGG28881AAC CT29857TC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_534970
 2020-04-27 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4724/2020
 C241T C3037T C14408T T22921C A23403G GGG28881AAC C29545T G29736T

EPI_ISL_538757
 2020-04-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C364T C1684T C8782T G11230T C23536T T28144C G28167A G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538835
 2020-04-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9A18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538849
 2020-04-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A9975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538999
 2020-04-27 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T A23403G C28674T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539483
 2020-04-27 2020-09-18
 India hCoV-19/India/PB-IMT-I14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C6312A G11083T C13730T C23929T T27273G C28311T T29845- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541380
 2020-04-27 2020-09-22
 Brazil hCoV-19/Brazil/SE-6550/2020
 ATTAAAGGTT1- C241T A2568G C3037T C14408T C15324T A23403G GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_541381
 2020-04-27 2020-09-22
 Brazil hCoV-19/Brazil/SE-6555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C4573T C5284T C11916T C14408T A23403G G25563T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541382
 2020-04-27 2020-09-22
 Brazil hCoV-19/Brazil/SE-6556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T C19269T C20032T C20669T A23403G T23596C T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541383
 2020-04-27 2020-09-22
 Brazil hCoV-19/Brazil/SE-6557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T312C A2568G C3037T C14408T C15324T A23403G GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_541384
 2020-04-27 2020-09-22
 Brazil hCoV-19/Brazil/SE-6561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C5284T G12988A C14408T A23403G GGG28881AAC GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_542553
 2020-04-27 2020-09-23
 United States hCoV-19/USA/TX-HMH-1148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C3784T C14408T C20628T A23403G C24130T G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_542556
 2020-04-27 2020-09-23
 United States hCoV-19/USA/TX-HMH-1155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T G15327T A23403G T24982C G25563T C27493T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542557
 2020-04-27 2020-09-23
 United States hCoV-19/USA/TX-HMH-1156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C9438T C14408T A23403G C25006T C25096T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542589
 2020-04-27 2020-09-23
 United States hCoV-19/USA/TX-HMH-1220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4113T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542596
 2020-04-27 2020-09-23
 United States hCoV-19/USA/TX-HMH-1231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T130C C241T C3037T G3187A T5065C C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542635
 2020-04-27 2020-09-23
 United States hCoV-19/USA/TX-HMH-1298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1457T C3037T C10030T C14408T C22264T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542743
 2020-04-27 2020-09-23
 United States hCoV-19/USA/TX-HMH-1481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542748
 2020-04-27 2020-09-23
 United States hCoV-19/USA/TX-HMH-1486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545061
 2020-04-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-2002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548962
 2020-04-27 2020-09-28
 Sweden hCoV-19/Sweden/RV-FOI-9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1302T C3037T C7955T C13667T C14408T A23403G G25563T C28016T C28253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560634
 2020-04-27 2020-09-29
 France hCoV-19/France/GE8809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTT521- C3037T A9741C C14408T C15324T A23403G A25968G G29425A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568958
 2020-04-27 2020-10-02
 France hCoV-19/France/IHU-0781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C9996T CT14408TC G16935T A23403G G25563T G29747T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568959
 2020-04-27 2020-10-02
 France hCoV-19/France/IHU-0783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568960
 2020-04-27 2020-10-02
 France hCoV-19/France/IHU-0784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T G9479T C14408T C15324T A23403G G28939T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT460113
 2020-04-27 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1093/2020
 ATTAAAGGTTTA1- C8782T C17747T A17858G C18060T T28144C

MT460114
 2020-04-27 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1094/2020
 ATTAAAGGTTTATA1- C241T C3037T C5467T C8389T G8785A C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT460115
 2020-04-27 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1095/2020
 ATTAAAGGTTTATACC1- C241T C3037T C5467T C8389T G8785A C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT627746
 2020-04-27 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S621/2020
 ATTAAAGG1- C241T C1059T C3037T C12068T C14408T G16912T T18863C A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT810603
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1124-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810611
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1138-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G C23638T T26960C GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810616
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1144-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1815G C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810620
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1148-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810623
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1153-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1135T C3037T G14229A C14408T C18115T A20268G A23403G G26268T C26735T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810624
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1154-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C5171T C14408T A20268G G21867T A23403G C27903T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810626
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1156-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- T1438C C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810652
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1189-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810683
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1247-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810690
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1262-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C6848T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810765
 2020-04-27 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1691-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1135T C3037T C8655T C13774T C14408T C18115T A20268G A23403G G25049T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810766
 2020-04-27 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1692-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C346T C3037T C10332T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810767
 2020-04-27 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1693-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810768
 2020-04-27 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1694-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4423T C14408T A19508C A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810876
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1587-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810883
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1596-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14184T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810891
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1619-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C12809T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810902
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1631-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4455T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810903
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1632-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T T15606C G16475A A20268G A23403G G24095T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810913
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1647-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810967
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0262-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C2028T C3037T C14408T G17014T A23403G G25563T G28812T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811285
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0637-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- AAGTCATTT686- C3037T A4584G C9438T C14408T C16616T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811407
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0845-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G3871A T6039C C14408T A20268G A23403G T24076C G28790A C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811416
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0907-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C5869T C14408T G18106T A20268G C22323T A23403G T24076C C28854T G29300T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811420
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0918-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G C21621T A23403G G23793T G25785T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811424
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0926-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G C21621T A23403G G23793T G25785T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811425
 2020-04-27 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0928-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- AAGTCATTT686- C3037T A4584G C9438T C14408T C16616T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT967932
 2020-04-27 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6227/2020
 C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

MW001252
 2020-04-27 2020-09-14
 United States SARS-CoV-2/human/USA/237-NP-OP/2020
 C241T C1059T C3037T C14408T T15326C C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_435473
 2020-04-28 2020-05-05
 United States hCoV-19/USA/CA-SR0175/2020
 C241T C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T

EPI_ISL_436892
 2020-04-28 2020-05-07
 United States hCoV-19/USA/WI-GMF-01978/2020
 C241T C1059T C1314T C3037T C14408T G22349T A23403G G25563T A27821G

EPI_ISL_436893
 2020-04-28 2020-05-07
 United States hCoV-19/USA/WI-GMF-01992/2020
 C241T C1059T C3037T G14008A C14408T C14599T C17676T C22227T A23403G G25563T C27297T

EPI_ISL_436894
 2020-04-28 2020-05-07
 United States hCoV-19/USA/WI-GMF-01993/2020
 C241T C1059T C3037T C5183T C12123T C14408T A23403G G25563T C29686T

EPI_ISL_436895
 2020-04-28 2020-05-07
 United States hCoV-19/USA/WI-GMF-01999/2020
 C241T C1059T C3037T C5183T C12123T C14408T A23403G G25563T C29686T

EPI_ISL_437551
 2020-04-28 2020-05-11
 United States hCoV-19/USA/CA-SR0261/2020
 C222T C241T C3037T C14408T A23403G GGG28881AAC C29870A

EPI_ISL_439305
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3653/2020
 C241T C3037T C14408T A20268G A23403G C26873T C28854T

EPI_ISL_439307
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3656/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_439308
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3657/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_439309
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3658/2020
 C241T C1377T C3037T C14408T C16289T A23403G G25429T G28077T

EPI_ISL_439311
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3695/2020
 C241T A2215G C3037T A10874G C12823T C14408T A23403G G25429T G25440A T26677C

EPI_ISL_439312
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3701/2020
 C241T C3037T A4269G C14408T A20268G A23403G GG26466TC C28854T G29291A

EPI_ISL_439313
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3725/2020
 C241T C3037T C9474T G10097A C14408T A23254G A23403G C23731T C25160T G28580T GGG28881AAC

EPI_ISL_439314
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3739/2020
 C241T C3037T C6573T C12885T C14408T G19635A G22021T A23403G C25528T G27715T GGG28881AAC

EPI_ISL_439315
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3740/2020
 C7423T C7869T

EPI_ISL_439316
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3744/2020
 C106T C241T C274T C3037T C14408T C17528T A20268G A23403G C28854T

EPI_ISL_439333
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3826/2020
 C241T C3037T C14408T A20268G A23403G GG26466TC C28854T

EPI_ISL_441863
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/England/NOTT-110813/2020
 C241T GTTATG515- C3037T C10440T C14408T C21637T A23403G GGG28881AAC

EPI_ISL_441864
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/England/NOTT-110822/2020
 C241T G1299T C3037T C14408T A23403G

EPI_ISL_441867
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/England/NOTT-11085F/2020
 C241T C3037T C4002T G10097A A11298G G12514T C13536T C14408T A23403G A23524C C23731T GGG28881AAC

EPI_ISL_441869
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/England/NOTT-11087D/2020
 A2480G C2558T C2940T G11083T C14805T A24373G G26144T

EPI_ISL_441870
 2020-04-28 2020-05-12
 United Kingdom hCoV-19/England/NOTT-11088C/2020
 C241T C1862T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_444057
 2020-04-28 2020-05-13
 United States hCoV-19/USA/CA-CZB-1099/2020
 ATT1- C241T C1059T G2764T C3037T C4069T C14408T C19011T A23403G G25563T

EPI_ISL_444058
 2020-04-28 2020-05-13
 United States hCoV-19/USA/CA-CZB-1100/2020
 ATTA1- C1102T C8782T T16950C C17747T A17858G C18060T C27710T T28144C

EPI_ISL_444337
 2020-04-28 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABE66/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_444339
 2020-04-28 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABE93/2020
 C241T C1059T C1218T C3037T C9286T C14408T A23403G G25563T G28378T G28899C

EPI_ISL_444359
 2020-04-28 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AC005/2020
 C241T C3037T C3373A C10519T C11195T C14408T A23403G A25946G GGG28881AAC

EPI_ISL_444365
 2020-04-28 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AC06F/2020
 G149A C241T C3037T C6385T C14408T A23403G G25912T GGG28881AAC

EPI_ISL_444370
 2020-04-28 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AC0C9/2020
 C241T C2509T C3037T C14408T C23123T A23403G C25521T G28514T

EPI_ISL_444372
 2020-04-28 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AC0F6/2020
 C241T C3037T G6123A G11417T C12525T C14408T A23403G GGG28881AAC

EPI_ISL_445213
 2020-04-28 2020-05-15
 Bangladesh hCoV-19/Bangladesh/DNAS_CPH_467/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A1163T C3037T G4444T G8371T G10979A C14408T A23403G G25906T CTACTTGTGAGCTTTATCA27431- TACAACAGTACTTTTAAAAGAACCTTGCTCTTCTGGAACATACGAGGGCAATTCACCATTTCATCCTCTAGCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGT27471- GGG28881AAC A29403G TAATA29848- G29853A -29857TACG T29859C A29880G AAAAAAAAAAAAAAA29889-

EPI_ISL_445214
 2020-04-28 2020-05-15
 Bangladesh hCoV-19/Bangladesh/DNAS_CPH_471/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A1163T T2041C C3037T G4444T G8371T C14408T A23403G T24887C GGG28881AAC A29403G T29848A A29850C -29852TA TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856C

EPI_ISL_445215
 2020-04-28 2020-05-15
 Bangladesh hCoV-19/Bangladesh/DNAS_CPH_427/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A1163T C3037T G4444T G8371T C14408T C15895T A23403G G25906T GGG28881AAC A29403G TAA29848ACT AG29852TA TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_445216
 2020-04-28 2020-05-15
 Bangladesh hCoV-19/Bangladesh/DNAS_CPH_466/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3688T C14408T C15324T A23403G T29848A ATAGCTT29850- GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_445217
 2020-04-28 2020-05-15
 Bangladesh hCoV-19/Bangladesh/DNAS_CPH_436/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A1163T C3037T G4444T G8371T C14408T A23403G G25906T CAACAGTACTTTTAAAAG27473- CCT27493TTA G27497T C27500T GGAACATACGA27505- G27516T ATTCACCATTTCATCCTCTAG27521- AA27550- T27553C T27555C -27558T GACTT27561TGTGA G27572T CTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGT27575- T27618C GTTAC27621AGAGT CC27629TT ATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGA27633- T27671G GGG28881AAC A29403G TAA29848ACT AG29852TA TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855GCTC

EPI_ISL_447547 MT481900
 2020-04-28 2020-05-17
 India SARS-CoV-2/human/IND/GBRC86/2020
 C241T C3037T C14408T T20063C A23403G C23638T

EPI_ISL_447548 MT481901
 2020-04-28 2020-05-17
 India SARS-CoV-2/human/IND/GBRC87/2020
 C241T C2836T C3037T C14408T T14501C G16078A C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_447555 MT481908
 2020-04-28 2020-05-17
 India SARS-CoV-2/human/IND/GBRC93/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_447972
 2020-04-28 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD17A/2020
 C241T A2514G C3037T C14408T C15857T A23403G G25314T GGG28881AAC C29281T G29751T

EPI_ISL_447977
 2020-04-28 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD1E3/2020
 C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC

EPI_ISL_449186
 2020-04-28 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9442T C14408T C16338T A23403G T24851A T26921C C27046T G28817T GGG28881AAC CCACGCGGAGTACGAT29738- G29778A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449187
 2020-04-28 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3689A T11660A C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449208
 2020-04-28 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A C3037T C3411T C3885T C14408T C17104T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449209
 2020-04-28 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16946T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449211
 2020-04-28 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G11083T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449212
 2020-04-28 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3689A T11660A C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449214
 2020-04-28 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2399T C3037T C10335T A11430G C14408T G19117T A23403G G25429A A27232G GGG28881AAC C28940T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449218
 2020-04-28 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C241T C1427T C3037T C14408T C16289T A23403G T25222C G25429T C26060T G28646K C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449220
 2020-04-28 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5002T C6347T C10798A C13862T C14408T G18225T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449223
 2020-04-28 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4230T C10798A C12747T C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_449257
 2020-04-28 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G885T C3037T C9430T C14408T G18677T A21405T A23403G C23701T GGG28881AAC TAATTTTAG29817- ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_449258
 2020-04-28 2020-05-19
 United Kingdom hCoV-19/Scotland/CVR3251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T C27630T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_450520
 2020-04-28 2020-05-21
 Latvia hCoV-19/Latvia/020/2020
 C241T C3037T TG13575CT C14408T A23403G C25831T GGG28881AAC

EPI_ISL_450521
 2020-04-28 2020-05-21
 Latvia hCoV-19/Latvia/021/2020
 C241T C3037T TG13575CT C14408T A23403G C25831T GGG28881AAC

EPI_ISL_450522
 2020-04-28 2020-05-21
 Latvia hCoV-19/Latvia/022/2020
 C241T C3037T TG13575CT C14408T A23403G C25831T G27842T GGG28881AAC

EPI_ISL_450523
 2020-04-28 2020-05-21
 Latvia hCoV-19/Latvia/023/2020
 C241T C3037T C14408T G14863A C15324T T22882G A23403G G26713T

EPI_ISL_450828
 2020-04-28 2020-05-22
 Sweden hCoV-19/Sweden/20-14090/2020
 C241T C3037T C3784T T12142C C14408T A23403G C24023T GGG28881AAC

EPI_ISL_450829
 2020-04-28 2020-05-22
 Sweden hCoV-19/Sweden/20-14094/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_451222
 2020-04-28 2020-05-24
 United States hCoV-19/USA/LA-EVTL061/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_452072
 2020-04-28 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-221/2020
 C241T C3037T C7834T C14408T TGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGT21664- T21703A TCCATGCTATACATGTCTCTGGG21756- C21855T A23403G

EPI_ISL_452074
 2020-04-28 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-224/2020
 C241T C593T C1059T C1302T C3037T C14408T C15738T C20178T A23403G G25563T G27746T

EPI_ISL_452075
 2020-04-28 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-227/2020
 C241T C1059T C1302T C3037T A8443G C14408T C15738T C20178T A23403G G25563T G27746T

EPI_ISL_452076
 2020-04-28 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-228/2020
 C241T C3037T C7834T C14408T C14645T C21707T C21855T A23403G C26984T

EPI_ISL_452077
 2020-04-28 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-233/2020
 C241T C1059T C3037T C6145T T8788C C14408T A23403G G25563T G26951A

EPI_ISL_452078
 2020-04-28 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-235/2020
 C241T C3037T C6968T C7834T C14408T G15906A C21707T C21855T A23403G

EPI_ISL_452137 MT512644 MT533201
 2020-04-28 2020-05-26
 United States SARS-CoV-2/human/USA/VI-CDC-4412/2020
 C241T C1059T C3037T C14408T A23403G G25563T T29710Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_454214
 2020-04-28 2020-05-28
 Portugal hCoV-19/Portugal/PT0490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_456403
 2020-04-28 2020-06-02
 New Zealand hCoV-19/New Zealand/20VR3064/2020
 C884T G1397A C6664T G8653T G11083T C26292T T28688C C29541T G29742T

EPI_ISL_457371 LR815563
 2020-04-28 2020-06-02
 United Kingdom NORW-EAD32
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C6312A C8660T C10626T A10948G G12917A G14268A C14408T G22592T A23403G C26010T GGG28881AAC

EPI_ISL_458238
 2020-04-28 2020-06-04
 United States hCoV-19/USA/CA-SR0351/2020
 C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_460838
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/Flevoland_15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C9474T G9802T G9805T C14408T T16203C A23403G C27247T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460942
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T A23403G G25563T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460943
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T G19999T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461141
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6270T C6723T C14408T A20268G A23403G A29700G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461185
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461189
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T T22152G A23403G C23506T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461199
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C19718T A23403G C23731T T25403C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461201
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C19718T A23403G C23731T T25403C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461237
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T16515C A23403G C23934T G27074A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461238
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T8166C C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461305
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G G19726T A23403G G25563T G25565A T25623C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461325
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815T C2453T C3037T C6151A C14408T C19170T G19509A A23403G G28077T AG28877TC GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461326
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11083T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461329
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11083T G11596T C13011T C14408T G20568A A23403G A26530G C27131T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461331
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461333
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11083T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461365
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461370
 2020-04-28 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G C26822T C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461814
 2020-04-28 2020-06-06
 United Kingdom hCoV-19/England/NORW-E8F2F/2020
 A1- C241T C1684T C3037T C12915T C14408T G14829T A20268G G21255T A23403G

EPI_ISL_461822
 2020-04-28 2020-06-06
 United Kingdom hCoV-19/England/NORW-E9119/2020
 A1- C241T C2940T C3037T C14408T C21648T A23403G

EPI_ISL_461823
 2020-04-28 2020-06-06
 United Kingdom hCoV-19/England/NORW-E9137/2020
 AT1- C241T C3037T C8655T T11313C C14408T A23403G GGG28881AAC C29803A

EPI_ISL_461825
 2020-04-28 2020-06-06
 United Kingdom hCoV-19/England/NORW-E9182/2020
 ATTAAAGGTTTA1- C241T C2940T C3037T C5170T C14408T C17766T C22945T A23403G

EPI_ISL_462303
 2020-04-28 2020-06-08
 Singapore hCoV-19/Singapore/185/2020
 C6310A C6312A G11083T C13730T C16726Y C19524T T22057Y C23929T G25135T G28242K C28311T AAAAAAAAAAAA29892-

EPI_ISL_462323
 2020-04-28 2020-06-08
 Singapore hCoV-19/Singapore/205/2020
 C6310A C6312A T8477Y G11083T A13099R C13730T C19524T G20397T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462324
 2020-04-28 2020-06-08
 Singapore hCoV-19/Singapore/206/2020
 C6310A C6312A G11083T C13730T C19524T C23929T T25422W C28311T AAAAAAAAAAAA29892-

EPI_ISL_462436 MT569472
 2020-04-28 2020-06-05
 Serbia SARS-CoV-2/human/SRB/UE38-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26720T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_463379 MT642284
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S889/2020
 ATTAAAGGTT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463381 MT642179
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S891/2020
 ATTAAAG1- G219T C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463382 MT642272
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S892/2020
 ATTAAAGGTT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463383 MT642195
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S893/2020
 AT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463386 MT642109
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S896/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C12880T G13571T C14408T A23403G G25563T T27940C G29553A C29686T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_463389 MT642270
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S899/2020
 ATT1- G1401A C8352T C8782T C17747T A17858G C18060T A19308G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463390 MT642398
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S900/2020
 ATTAAAGGTTTAT1- G1401A C8782T C17747T A17858G C18060T A19308G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463391 MT642370
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S901/2020
 ATTAAAGGTTT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463401 MT642105
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S911/2020
 C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_463472 MT642187
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S982/2020
 ATTAAAGGTTTA1- C241T C1204T G1747A C3037T T10033C C14408T C16289T C21575T A23403G G25429T C26645T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463478 MT642286
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S988/2020
 ATTAAAGGTTTAT1- C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463479 MT642312
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S989/2020
 ATTAAA1- C241T A2161G C3037T C7279T C14408T C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463480 MT642375
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S990/2020
 ATTAAAGGTT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_463482 MT642285
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S992/2020
 ATTAAAG1- C8782T T10830C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463486 MT642415
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S996/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T A28591T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463487 MT642300
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S997/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C7113T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463488 MT642360
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S998/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C8982T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463489
 2020-04-28 2020-06-10
 United States hCoV-19/USA/WA-S999/2020
 ATTAAAGGTTTAT1- C241T C1059T C2701T C3037T C14408T A23403G G25563T G27376T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_463490
 2020-04-28 2020-06-10
 United States hCoV-19/USA/WA-S1000/2020
 ATTAAAGGTTTA1- C241T C1059T C2701T C3037T C14408T A23403G G25563T G27376T G29734T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463491 MT642330
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1001/2020
 AT1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463548 MT642366
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1058/2020
 ATTAAAGGTTTATA1- C8782T C14898T C17747T A17858G C18060T C25513A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463549 MT642307
 2020-04-28 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1059/2020
 ATTAAAGGTTTAT1- C8782T C14898T C17135T C17747T A17858G C18060T C25513A T28144C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_464008
 2020-04-28 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0068/2020
 C241T C3037T C10369T C14408T C18877T C22591T A23403G G25563T

EPI_ISL_465583
 2020-04-28 2020-06-11
 United Kingdom hCoV-19/England/20190012401/2020
 C241T C3037T C13548T C14408T A23403G T25663Y T28244C GGG28881AAC

EPI_ISL_465704
 2020-04-28 2020-06-11
 United Kingdom hCoV-19/England/20186080304/2020
 C241T C3037T C14408T A23403G A28984C G29260T A29871M

EPI_ISL_465706
 2020-04-28 2020-06-11
 United Kingdom hCoV-19/England/20186081804/2020
 C241T C3037T G3216K T9435Y C9924T C14408T G16206T A23403G A28870G GGG28881AAC C29585T A29874R A29884R A29898W

EPI_ISL_465708
 2020-04-28 2020-06-11
 United Kingdom hCoV-19/England/20186084004/2020
 C241T C920T C3037T C13730T C14408T A23403G G25429T

EPI_ISL_465709
 2020-04-28 2020-06-11
 United Kingdom hCoV-19/England/20186084504/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_467368
 2020-04-28 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2840/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467369
 2020-04-28 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2844/2020
 ATTAAAGGTTT1- C241T C3037T C5144T A10042G C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467370
 2020-04-28 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2847/2020
 ATTAAAGGTTT1- C241T C3037T C5144T A10042G C14408T A23403G T27299C GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467371
 2020-04-28 2020-06-12
 Brazil hCoV-19/Brazil/RJ-2868/2020
 ATTAA1- C241T C3037T C14408T G15438T A23403G T27299C G28077T GGG28881AAC T29148C GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_467398
 2020-04-28 2020-06-13
 United States hCoV-19/USA/NY-NYUMC905/2020
 C241T C3037T A4295G C14408T C17894T A18390C A23403G C25528T GGG28881AAC T29080C

EPI_ISL_467781
 2020-04-28 2020-06-15
 Romania hCoV-19/Romania/ChVir7248/2020
 ATTAAAGGTTTAT1- C241T G2235A C3037T C8986T C9534T C14408T A20268G G21850T C22295T A23403G C29311T G29734C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_468426 MT628160
 2020-04-28 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C3042T C9967T C11747T C12473T C13275Y C14408T A23403G G24095T C24372Y G25563T C27964T G29742R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468480 MT628207
 2020-04-28 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1535/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T G4162A C12053T G13858T C14408T C15251T A23403G C25207T G25563T T26604Y G28378T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_468488 MT628212
 2020-04-28 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1543/2020
 GT28881SC C241T C379A C1059T C3037T C8344T C11003Y C14408T A23403G G25563T GGCCACGCGGAGTACGATCGAGTG29736-

EPI_ISL_468489 MT628213
 2020-04-28 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1544/2020
 ATTAAA1- C241T C1059T C3037T A8116G C11916T G13013R C14408T C17678Y C18998T A19073G A23403G G25563T G29540A

EPI_ISL_469856
 2020-04-28 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-101280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C17004T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470839
 2020-04-28 2020-06-19
 Australia hCoV-19/Australia/WA21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- ATG1605- G16411T G20580T C22987A G25019T G26450T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471414
 2020-04-28 2020-06-20
 Democratic Republic of the Congo hCoV-19/DRC/4194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1426T C3037T C14408T C15324T C18129T A23403G C25169T G28302C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_471415
 2020-04-28 2020-06-20
 Democratic Republic of the Congo hCoV-19/DRC/4250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A G12514T C13536T C14408T A23403G C23731T A25505G T26454C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_471875
 2020-04-28 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20854/2020
 C241T C1059T C3037T A5011M C9165T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_471883
 2020-04-28 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20862/2020
 C241T C1059T C3037T A5011M C9165T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_472948
 2020-04-28 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16054A/2020
 C241T C3037T T5573C C6380T G11801A C14408T C18322Y T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_473862
 2020-04-28 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5842/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_473863
 2020-04-28 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5852/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_473864
 2020-04-28 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5853/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_474182
 2020-04-28 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164494/2020
 C241T C3037T C9438T C14408T A23403G GGG28881AAC G29777T AAAA29900-

EPI_ISL_475276
 2020-04-28 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0D2E/2020
 C241T C313T G347A C3037T G3053T A13420G C14408T C14471T C15324T A23403G C25433T A28466G C29546T

EPI_ISL_475343
 2020-04-28 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C09D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475360
 2020-04-28 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C232F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T T28098C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475368
 2020-04-28 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C335B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C936A C3037T T7438C G10097A C12488T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475409
 2020-04-28 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C870F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475421
 2020-04-28 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C948F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C11750T C13381T C14408T A23403G C23731T A23992T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475447
 2020-04-28 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CCAC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9391T C14408T A16512G A20015G A21405T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475448
 2020-04-28 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CCCEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475473
 2020-04-28 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CED25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16466T A23403G G23948C C27434T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475504
 2020-04-28 2020-06-23
 United Kingdom hCoV-19/England/SHEF-D277B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C9344T C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T T28098C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475541
 2020-04-28 2020-06-23
 Sweden hCoV-19/Sweden/20-14071/2020
 C241T C3037T C14408T A23403G C26447T GGG28881AAC C28887T

EPI_ISL_475903
 2020-04-28 2020-06-25
 Austria hCoV-19/Austria/CeMM0546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G521K C3037T AC4229RY A4233R C5178Y G5180R C14408T C20930Y A23403G G23608T GGG28881AAC G29540T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475938
 2020-04-28 2020-06-25
 Singapore hCoV-19/Singapore/407/2020
 C2504T C6310A C6312A A8556G G11083T C13730T C16694T G18891A C19524T T21368C C23929T C25916T C28311T AAAAAAAAAAAA29892-

EPI_ISL_475942
 2020-04-28 2020-06-25
 Singapore hCoV-19/Singapore/411/2020
 C6310A C6312A G11083T C13730T C19524T G19999T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_476118 LR824522 LR861078
 2020-04-28 2020-06-25
 Switzerland 140070
 C241T C3037T C4543Y C10893T C14322Y C14408T C15081Y C15720Y G18697R C19484Y G19690T A20753G C22347S T22516W A23403G C27920Y C29754Y C29769Y

EPI_ISL_476720
 2020-04-28 2020-06-25
 United States hCoV-19/USA/MN-MDH-1135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C539T C1059T C3037T C5826T C14408T G14866T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_476721
 2020-04-28 2020-06-25
 United States hCoV-19/USA/MN-MDH-1136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C539T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_476722
 2020-04-28 2020-06-25
 United States hCoV-19/USA/MN-MDH-1137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T ATG518- C1059T C2939T C3037T C14408T A23403G G25437T G25563T A27821G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_476723
 2020-04-28 2020-06-25
 United States hCoV-19/USA/MN-MDH-1138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C539T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_476724
 2020-04-28 2020-06-25
 United States hCoV-19/USA/MN-MDH-1139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G G29734A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_476725
 2020-04-28 2020-06-25
 United States hCoV-19/USA/MN-MDH-1140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C539T C1059T C3037T C14408T A23403G G25563T C28651T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_476726
 2020-04-28 2020-06-25
 United States hCoV-19/USA/MN-MDH-1141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C539T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_476727
 2020-04-28 2020-06-25
 United States hCoV-19/USA/MN-MDH-1142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_476728
 2020-04-28 2020-06-25
 United States hCoV-19/USA/MN-MDH-1143/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_476729
 2020-04-28 2020-06-25
 United States hCoV-19/USA/MN-MDH-1144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C539T C1059T C3037T C14408T A23403G G25563T C28651T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_476730
 2020-04-28 2020-06-25
 United States hCoV-19/USA/MN-MDH-1145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_476731
 2020-04-28 2020-06-25
 United States hCoV-19/USA/MN-MDH-1146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C539T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_476993
 2020-04-28 2020-06-27
 Belgium hCoV-19/Belgium/rega-0428425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476994
 2020-04-28 2020-06-27
 Belgium hCoV-19/Belgium/rega-0428427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1228A C1627T C3037T A8992G C14408T C14980T C15324T A23403G G27703T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477633 MT679157
 2020-04-28 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T C21057T A23403G G25563T C29870A

EPI_ISL_477636 MT679160
 2020-04-28 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0420/2020
 C241T C1059T C3037T C14408T C21057T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_477637 MT679161
 2020-04-28 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0421/2020
 AT1- C241T C1059T C2838T C3037T C14408T A23403G C24034T G25563T A28108T

EPI_ISL_477763
 2020-04-28 2020-06-30
 United Kingdom hCoV-19/England/BIRM-61340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25249T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477774
 2020-04-28 2020-06-30
 United Kingdom hCoV-19/England/BIRM-61498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1158A C2358T C3037T C5348T G6123A C14408T A23403G C25207T G25563T C28332T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477779
 2020-04-28 2020-06-30
 United Kingdom hCoV-19/England/BIRM-61595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G4510T G10097A C13536T C14184T C14408T C21058T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478053
 2020-04-28 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26615T GGG28881AAC C28957Y G28985K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479031
 2020-04-28 2020-06-30
 United Kingdom hCoV-19/England/OXON-B162A/2020
 C241T C3037T T11164G C14408T G21538T G22332A A23403G G25429T AAAAAAAAAAAAAAAA29888-

EPI_ISL_479050
 2020-04-28 2020-06-30
 United Kingdom hCoV-19/England/OXON-B18CA/2020
 C21T C241T T1537C C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_479057
 2020-04-28 2020-06-30
 United Kingdom hCoV-19/England/OXON-B198B/2020
 C241T C3037T C5183T C14408T A20268G A23403G C26571T G28109T C28854T G28968T AAAAAAAA29896-

EPI_ISL_479066
 2020-04-28 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1A4C/2020
 C241T C3037T C5183T C14408T A20268G A23403G C26571T G26718T G28109T C28854T G28968T

EPI_ISL_479505
 2020-04-28 2020-06-30
 India hCoV-19/India/NIV-16503/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C4234T C5700A C14408T G17211T A23403G T27206C T28297C GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_481227
 2020-04-28 2020-07-02
 Belgium hCoV-19/Belgium/UGent-133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C3037T C5497T C14120T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481624
 2020-04-28 2020-07-03
 Finland hCoV-19/Finland/28A30S6/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481625
 2020-04-28 2020-07-03
 Finland hCoV-19/Finland/28A40S6/2020
 C241T C1059T C3037T C11620T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481626
 2020-04-28 2020-07-03
 Finland hCoV-19/Finland/28A50S11/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C28292A C28453T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481627
 2020-04-28 2020-07-03
 Finland hCoV-19/Finland/28A53S11/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T T26639C C28292A C28453T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481628
 2020-04-28 2020-07-03
 Finland hCoV-19/Finland/28A54S11/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C28292A C28453T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481629
 2020-04-28 2020-07-03
 Finland hCoV-19/Finland/28A68S17/2020
 C241T C589T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481630
 2020-04-28 2020-07-03
 Finland hCoV-19/Finland/28A72S11/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T GGCCACGCGGAGTACGATCGAGTG29736- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481631
 2020-04-28 2020-07-03
 Finland hCoV-19/Finland/28A76S6/2020
 C241T C589T C1059T C3037T C14408T A23403G G24368T G25459T G25563T A27711T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481632
 2020-04-28 2020-07-03
 Finland hCoV-19/Finland/28A77S6/2020
 C241T C1059T G1738C C3037T C9565T A13653G C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481633
 2020-04-28 2020-07-03
 Finland hCoV-19/Finland/28A78S6/2020
 C241T C1059T C3037T C14408T T15198C C21575T A23403G G24368T G25563T C28453T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481634
 2020-04-28 2020-07-03
 Finland hCoV-19/Finland/28A79S6/2020
 C241T C1059T C3037T C14408T T15198C C21575T A23403G G24368T G25563T C28453T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481635
 2020-04-28 2020-07-03
 Finland hCoV-19/Finland/28A90S17/2020
 C241T C1059T C3037T C9565T A11983G C14408T A19838C A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481636
 2020-04-28 2020-07-03
 Finland hCoV-19/Finland/28A92S17/2020
 C241T C643T C1059T C3037T C9565T A13653G C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482115
 2020-04-28 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-101253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5719C G11083T C14408T A23403G G25563T G27572C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482388
 2020-04-28 2020-07-03
 United States hCoV-19/USA/OR-PROV-124/2020
 C241T C3037T C11563T C14408T C16952T C17028T C18877T A23403G G24550A G25563T

EPI_ISL_482389
 2020-04-28 2020-07-03
 United States hCoV-19/USA/OR-PROV-125/2020
 C241T AAGTCATTT686- C3037T T4765C C6312T C11563T G14209T C14408T C17678T C18877T A23403G G25563T C29675T

EPI_ISL_482390
 2020-04-28 2020-07-03
 United States hCoV-19/USA/OR-PROV-126/2020
 C241T C1059T C3037T C14322T C14408T C18086T A23403G G25563T A26528T A28492T

EPI_ISL_483421
 2020-04-28 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0932-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2594Y C3037T C4582T C11102T C14408T A20268G A23403G

EPI_ISL_484274
 2020-04-28 2020-07-08
 United Kingdom hCoV-19/England/NORT-296C27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12546T C14408T A23403G T26837C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484275
 2020-04-28 2020-07-08
 United Kingdom hCoV-19/England/NORT-296C45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T950C C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484276
 2020-04-28 2020-07-08
 United Kingdom hCoV-19/England/NORT-296C81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T C16289T A21717T A23403G G28179T GGG28881AAC C29370T G29440T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484277
 2020-04-28 2020-07-08
 United Kingdom hCoV-19/England/NORT-296CBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G C21707T C23202T A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484279
 2020-04-28 2020-07-08
 United Kingdom hCoV-19/England/NORT-296CFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7267T C14408T C17463T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484280
 2020-04-28 2020-07-08
 United Kingdom hCoV-19/England/NORT-296D33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6196T C12073T C14408T A23403G G27750T C29762T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484399
 2020-04-28 2020-07-08
 United Kingdom hCoV-19/England/NOTT-1125B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A C8660T C10626T A10948G G12917A C14408T G18445T A23403G C26010T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485020
 2020-04-28 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26492435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485031
 2020-04-28 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26492453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C10954T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485034
 2020-04-28 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26492456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G713T C1059T C3037T A5875G C14408T A23403G C25317T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485035
 2020-04-28 2020-07-09
 United States hCoV-19/USA/LA-GBCL-26492457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2878T C3037T C4570T C14408T A23403G G25563T C27964T G29528A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486150 MT750358
 2020-04-28 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C379A C1059T C1170T C3037T C14408T C22224T A22904M A23122R A23403G G25563T T25902W T25908W G25913S C27002Y T27318A G28703T

EPI_ISL_486151 MT750359
 2020-04-28 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C3037T C14408T A20268G A23122V A23403G T25902W T25908W G25913S G28167R AAA29901-

EPI_ISL_486166 MT750373
 2020-04-28 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1859/2020
 ATTAA1- C241T C379A C1059T C3037T A10761R C14408T C17440Y C22224T A22904M A23122R A23403G G25563T C28926Y C29205T

EPI_ISL_486167 MT750374
 2020-04-28 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C3037T C14408T G18898T C21772T A22904M A23122V A23403G T25902W T25908W G25913S GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486168
 2020-04-28 2020-07-10
 United States hCoV-19/USA/CA-CZB-1863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G18898T C21772T A23122R A23403G T25902W T25908W G25913S C26198T GGG28881AAC

EPI_ISL_486171 MT750377
 2020-04-28 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1323T C1327Y C2676Y C3037T C5144Y C11758Y C13620Y C14408T G18534S G18898T C21772T A23122R A23403G T25902W T25908W G25913S C27855Y A28081R C28093Y GGG28881AAC G29422K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486172 MT750378
 2020-04-28 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C3037T A4638W T7293Y G7312K C14408T C15173Y C16963Y C17840Y C18744Y C18799Y G18898T C19018Y C21575Y C21772T A23079R A23122V A23403G T25902W T25908W G25913S GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486173 MT750379
 2020-04-28 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G18898T C21772T A23122M A23403G T25902W T25908W G25913S GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486174 MT750380
 2020-04-28 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1874/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A30R C241T G1323T C3037T C14408T G18898T C21772T A23403G C24198T GGG28881AAC T29867H

EPI_ISL_486176 MT750381
 2020-04-28 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G285K CC320SY C1538Y C3037T A4413M A4636R C13366Y C13368Y C14408T C16996Y G18898T G19478K C21772T A23122R C23130Y A23403G C23705Y T25902W T25908W G25913S T27534Y C27610Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486177
 2020-04-28 2020-07-10
 United States hCoV-19/USA/CA-CZB-1878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S G1323T C3037T C14408T G18898T C21772T A22904M A23122V A23403G T25902W T25908W G25913S GGG28881AAC

EPI_ISL_486179 MT750383
 2020-04-28 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1880/2020
 AT1- C241T C3037T C14408T A20268G A22904V A23122R A23403G T25902W T25908W G25913S AA29902-

EPI_ISL_486180
 2020-04-28 2020-07-10
 United States hCoV-19/USA/CA-CZB-1881/2020
 ATTA1- C241T C3037T C14408T G21255C A23122R A23403G GGG28881AAC G28960T

EPI_ISL_486181 MT750384
 2020-04-28 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1882/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G21255C A22904V A23122R A23403G C25469T T25902W T25908W G25913S GGG28881AAC G28960T

EPI_ISL_487668
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G C26333T G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487737
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487775
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3881G C14408T A23403G C25350T C26907Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487810
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487827
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3543T T5158C C14408T C16289T C22388T A23403G G23426T G25429T C25511T C26985T C27800T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487860
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C14408T C22949T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487947
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9180T C9223T C14408T T16791C A23403G T25535Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488005
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-296B57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1149A C3037T C14408T C20574T A23403G G25563T C25688T G25720T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488020
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-2982D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488025
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-296B75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1149A C3037T T8601Y C14408T C20574T A23403G G25563T C25688T G25720T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488033
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-2983F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- AAGTCATTT686- T4481W A7291G C7769T G11083T C11173T C14675Y C14805T TTA21991- G26144K C28697T A29600G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488075
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-29800B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9857T C14408T A20465R A23403G G24390T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488077
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-298250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C21342T A23403G G25563T T27324G G28812T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488087
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-296DE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C3037T C8334T A10194C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488096
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-29827E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4794T C14408T C18377T A23403G G25459T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488119
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-296BDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1149A C3037T C14408T C20574T A23403G G25563T C25688T G25720T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488120
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-296B84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A A3390G C10507T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488138
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-296C09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17410T C22120T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488146
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-296BA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1149A C3037T C14408T C20574T A23403G G25563T C25688T G25720T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488161
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-296DCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22120T A23403G G27996T GGG28881AAC C29541Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488168
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/England/NORT-296DF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C3037T C8334T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488872
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/England/WSFT-25C17ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3263G C9474T C14408T C21691T A23403G C25047T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489174
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FCD2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9967T A10323G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489231
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FCE85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C12747T C14408T G18028T A23403G GTTCTA28090- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489235
 2020-04-28 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FD1F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11824T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491122
 2020-04-28 2020-07-16
 Oman hCoV-19/Oman/C-9311/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T G16158T C16293T G17302T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856CT

EPI_ISL_491124
 2020-04-28 2020-07-16
 Oman hCoV-19/Oman/C-8871/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T A23403G G25445T GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840CT

EPI_ISL_491133
 2020-04-28 2020-07-16
 Oman hCoV-19/Oman/C-9263/2020
 ATTAAAGGTTTATACCTTCCCAG1- G24C C241T C3037T G10265A C14408T C16293T G17302T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491533
 2020-04-28 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB3721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A23403G A24862G T26715K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491614
 2020-04-28 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB3699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T G13397A C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492233
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18540E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T1854K C3037T C11878T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492238
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1854327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T C15540T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492249
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1854257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7564Y G10097A C10369T C14408T A23403G C23731T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492252
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853EFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492253
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1854336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492265
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-185413C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24075T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492271
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-185412D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492274
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18542EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T C15540T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492277
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1853F7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T G11083T C14408T G16861T A23403G G25563T C25688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492278
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18541F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17249T G17722T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492283
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1854345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C C21575T A23403G C25355T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492292
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18540A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A873G C3037T T3877A G7038A C14408T G16741K A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492331
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18542B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492348
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-185421B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T G25091T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492355
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1854275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1812T C3037T G10097A C10369T C14408T A23403G C23731T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492367
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18540D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492373
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-185411E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492381
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1854266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492383
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1854169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7798T A10627G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492411
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18543EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9646A G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492427
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-1854248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T A24629T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492440
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18542FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492445
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-185422A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346Y C3037T T8729Y G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492449
 2020-04-28 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18542DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7798T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493451
 2020-04-28 2020-07-21
 United Kingdom hCoV-19/England/BIRM-61717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T10520C C16466T A27669G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494375
 2020-04-28 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C222T C241T C3037T C14408T T15817C A23403G GGG28881AAC

EPI_ISL_494382
 2020-04-28 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1132/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494387
 2020-04-28 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C1594T C3037T C14408T C16762T A23403G G25563T G25660T

EPI_ISL_494388
 2020-04-28 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1143/2020
 ATTAAAGGTTTA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494401
 2020-04-28 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1815G C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494403
 2020-04-28 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1160/2020
 A1- C241T A1815G C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494415
 2020-04-28 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C9438T C12132T C14408T A20268G A23403G C28854T

EPI_ISL_494422
 2020-04-28 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1186/2020
 ATTA1- C241T C3037T G9802T C14408T A20268G G21786T A23403G C28854T

EPI_ISL_494423
 2020-04-28 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1187/2020
 ATTA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494424
 2020-04-28 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1188/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_494426
 2020-04-28 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2973T C3037T C4777T C7011T T10955C C14408T A23403G CCAGATCAGTTT27629- G28551T GGG28881AAC

EPI_ISL_494428
 2020-04-28 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1192/2020
 ATTAAAGGTTT1- C241T C1288T C3037T C11575T C14408T A20268G C20451T A23403G C28854T

EPI_ISL_494466
 2020-04-28 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C11674T C14408T A20268G G22799A A23403G C28854T

EPI_ISL_494467
 2020-04-28 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1267/2020
 ATTAAA1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T C29353T

EPI_ISL_494505 MT786799
 2020-04-28 2020-07-22
 United States SARS-CoV-2/human/USA/CA-QDX-185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAG1- C241T C1059T C3037T C9967T C14408T C18115T G23236T A23403G G25563T C27964T C28291T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494506 MT786800
 2020-04-28 2020-07-22
 United States SARS-CoV-2/human/USA/CA-QDX-186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T C14408T C18115T G23236T A23403G C23895T G25563T C27964T C28291T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494510 MT786809
 2020-04-28 2020-07-22
 United States SARS-CoV-2/human/USA/GA-QDX-175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3159T C14408T T18592G C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494511 MT786810
 2020-04-28 2020-07-22
 United States SARS-CoV-2/human/USA/GA-QDX-177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4534T C14408T C19524T A23403G T25063C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494512 MT786811
 2020-04-28 2020-07-22
 United States SARS-CoV-2/human/USA/IL-QDX-176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G A23704G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494513 MT786812
 2020-04-28 2020-07-22
 United States SARS-CoV-2/human/USA/IL-QDX-178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T C28603T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494518 MT786817
 2020-04-28 2020-07-22
 United States SARS-CoV-2/human/USA/IN-QDX-182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C12068T C14408T A23403G G25563T G28048A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494519 MT786818
 2020-04-28 2020-07-22
 United States SARS-CoV-2/human/USA/IN-QDX-184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T C14408T A23403G T27299C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494527 MT786826
 2020-04-28 2020-07-22
 United States SARS-CoV-2/human/USA/NC-QDX-180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C11752T C11962T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494528 MT786827
 2020-04-28 2020-07-22
 United States SARS-CoV-2/human/USA/NC-QDX-181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C11752T C11962T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494674
 2020-04-28 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_494689
 2020-04-28 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_494697
 2020-04-28 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C5467T C8389T C12249T C13487T C14408T C17825T A23403G G25563T

EPI_ISL_495885 MT821530
 2020-04-28 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1435/2020
 A1- C241T C3037T C14408T C14724T C15933T G16968T C18306T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_495886 MT821713
 2020-04-28 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1436/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495887 MT821534
 2020-04-28 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1437/2020
 A1- C241T C3037T G4510T C14408T C15933T T19839C T22690C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_496345
 2020-04-28 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C7720T C9719A C14408T G17427T G18028T C18395T A20268G A23403G C28854T

EPI_ISL_496348
 2020-04-28 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_496351
 2020-04-28 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G C21260T A23403G G24399T C27883T C28603T C28854T

EPI_ISL_496555
 2020-04-28 2020-07-24
 India hCoV-19/India/NCCS_NR048/2020
 AT1- T9- C241T C3037T C14408T G15760T C18877T A23403G G25552T G25563T C26735T

EPI_ISL_496556
 2020-04-28 2020-07-24
 India hCoV-19/India/NCCS_NR049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G15760T C18877T A23403G G25552T G25563T C26735T

EPI_ISL_496557
 2020-04-28 2020-07-24
 India hCoV-19/India/NCCS_NR051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- A30T C241T C3037T C14408T G15760T C18877T A23403G G25552T G25563T C26735T

EPI_ISL_497879
 2020-04-28 2020-07-25
 India hCoV-19/India/NCCS_NR099/2020
 ATTAAAGGTTTATACCTTC1- CA21AG G24A A27T A29T C241T C313T C3037T C5700A C14408T A23403G T28759- GGG28881AAC

EPI_ISL_498695 MT806756
 2020-04-28 2020-07-27
 United States SARS-CoV-2/human/USA/AL-QDX-244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C16289T G20679T A23403G G25563T G27670T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498696 MT806757
 2020-04-28 2020-07-27
 United States SARS-CoV-2/human/USA/AL-QDX-245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C16289T G20679T A23403G G25563T G27670T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498718 MT806779
 2020-04-28 2020-07-27
 United States SARS-CoV-2/human/USA/GA-QDX-241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C1059T C3037T C9264T G11083T C14408T C21110T A23403G G25563T C27964T C28846T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498719 MT806780
 2020-04-28 2020-07-27
 United States SARS-CoV-2/human/USA/GA-QDX-242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C601T T1211A C3037T C8389T C14408T A23403G G25563T G27915A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498720 MT806781
 2020-04-28 2020-07-27
 United States SARS-CoV-2/human/USA/GA-QDX-243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T14401C C14408T A23403G G25563T G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498725 MT806786
 2020-04-28 2020-07-27
 United States SARS-CoV-2/human/USA/IL-QDX-260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T C14408T A23403G G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498737 MT806798
 2020-04-28 2020-07-27
 United States SARS-CoV-2/human/USA/TN-QDX-246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T T833C C1059T C3037T TG4125AA C14408T C17012T C21575A A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498740 MT806802
 2020-04-28 2020-07-27
 United States SARS-CoV-2/human/USA/TX-QDX-250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507032 MT820475
 2020-04-28 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KFSHRC27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507033 MT820476
 2020-04-28 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KFSHRC28/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507034 MT820477
 2020-04-28 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KFSHRC31/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T A23403G C24374T T27484C GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_507035 MT820478
 2020-04-28 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KFSHRC42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T C21762T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_507036 MT820479
 2020-04-28 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KFSHRC43/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T G28808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507098
 2020-04-28 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A G6463T C6781T A24178G A27669G C29364T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507110
 2020-04-28 2020-08-03
 United Kingdom hCoV-19/England/NORT-299F3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T950C C3037T C14408T C15017T A15641G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508359
 2020-04-28 2020-08-04
 India hCoV-19/India/IK29/2020
 AT1- C241T C3037T C14408T A23403G C27944T G28221T G29868A

EPI_ISL_508360
 2020-04-28 2020-08-04
 India hCoV-19/India/IK30/2020
 A1- G185T C241T C2040T C3037T C14408T G15451A G21786C G22343A A23403G G29742A G29868A

EPI_ISL_508361
 2020-04-28 2020-08-04
 India hCoV-19/India/IK31/2020
 AT1- G185T C241T C2040T C3037T C14408T G15451A G21786C G22343A A23403G G29742A G29868A

EPI_ISL_508447
 2020-04-28 2020-08-04
 India hCoV-19/India/S39/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C2143T C3037T C14408T T22690G A23403G TG29867AA C29870G

EPI_ISL_509067
 2020-04-28 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20980A TGG21294AAA A23403G G23761A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_509499
 2020-04-28 2020-08-05
 Australia hCoV-19/Australia/NSW2125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10435C C10851T C14408T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509693 MT844041
 2020-04-28 2020-08-05
 United States SARS-CoV-2/human/USA/UT-CDC-9756/2020
 C241T C3037T C4672T C5184T C14408T G17122T C18457T A19334G A23403G A25121T C26256T C29668T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_511103
 2020-04-28 2020-08-07
 Portugal hCoV-19/Portugal/PT0844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G5564T C6031T C14408T A23403G G25088T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512955
 2020-04-28 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH545/2020
 C241T C3037T C14408T C18877T A23403G G23666C GGG28881AAC

EPI_ISL_516689 MT913124
 2020-04-28 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0360/2020
 AT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C C29077T G29540A

EPI_ISL_516690 MT913125
 2020-04-28 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0361/2020
 AT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C C29077T G29540A C29870A

EPI_ISL_520716
 2020-04-28 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L46302981/2020
 C884T G1397A C7164T G8653T G11083T C12924T G13639A C22388T G27235A T28688C C29421T G29742T

EPI_ISL_520738
 2020-04-28 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920689030/2020
 C241T C3037T G5668A C14408T A23403G GGG28881AAC

EPI_ISL_522991
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T G6894T G14274A C14408T A23403G A24862G C26078T AGCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTC27540- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_522992
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T G1478A C3037T G12795A G14274A C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_522994
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T G1478A C3037T G12795A G14274A C14408T T23018C A23403G A24862G C29503T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_522997
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T G12795A G14274A C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_522999
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T G12795A G14274A C14408T G17427T C22747A A22920T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523000
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T G3971A G11083T G14274A C14408T G22661T A23403G A24862G C26078T C28453T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523001
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G G14274A C14408T A23403G A24862G T26047G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523002
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G G14274A C14408T A23403G A24862G T26047G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523003
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G G14274A C14408T T23018C A23403G A24862G T26047G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523004
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T G1478A C3037T G6134A G12795A G14274A C14408T A23064C A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523010
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C2221T C3037T A4967G G14274A C14408T A23403G A24862G T26047G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523016
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T G1478A C3037T G12795A G14274A C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523022
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G G14274A C14408T A23403G A24862G T26047G G27506A TTTACTCTCCAA27680- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523028
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T G12795A G14274A C14408T A23403G A24862G C26013T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523034
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T G12795A G14274A C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523040
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T G1478A C3037T C10401T C12473T G12795A G14274A C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523046
 2020-04-28 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-1-9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T G12795A G14274A C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523123
 2020-04-28 2020-08-26
 Netherlands hCoV-19/Netherlands/DR-EMC-5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T A25921G G26501T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523196
 2020-04-28 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523197
 2020-04-28 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12932T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523427
 2020-04-28 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G3955T C11109T C14408T C15720T C19854T A23403G C25482T G25563T G28237T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524575
 2020-04-28 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE2C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8612T C14408T G21724T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524593
 2020-04-28 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AEAD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6990T C14408T A23403G G25650T C29200T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524596
 2020-04-28 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AEB3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6677G C13730T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524601
 2020-04-28 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T C14408T G16206T A23403G GGG28881AAC C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524610
 2020-04-28 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AEB20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20483T G21800T A23403G G28514T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524783
 2020-04-28 2020-08-28
 Brazil hCoV-19/Brazil/PA-IEC-164747/2020
 C241T C3037T A6319G C14408T A23403G G25088T T26149C C27294T GGG28881AAC

EPI_ISL_524790
 2020-04-28 2020-08-28
 Brazil hCoV-19/Brazil/MA-IEC-165398/2020
 C241T C3037T G11083T C14408T T21147C A23403G T27299C GGG28881AAC T29148C

EPI_ISL_525476
 2020-04-28 2020-08-31
 Sri Lanka hCoV-19/Sri Lanka/CDR1885/2020
 A1- C241T C3037T C3093T G10523A C14408T C15324T G16117R AA21550MW A23403G C27213T A27379G GAT27382SWY GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_526227
 2020-04-28 2020-09-01
 Hungary hCoV-19/Hungary/MH-5846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3426T C3686T G10051A T10567C C14408T C21077T A23403G G25074T C25658T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526485
 2020-04-28 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB5837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T C21627T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526934
 2020-04-28 2020-09-02
 Colombia hCoV-19/Colombia/103045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7749T C10507T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526951
 2020-04-28 2020-09-02
 Colombia hCoV-19/Colombia/103039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526952
 2020-04-28 2020-09-02
 Colombia hCoV-19/Colombia/103045/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7749T C10507T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526955
 2020-04-28 2020-09-02
 Colombia hCoV-19/Colombia/103303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T C14408T C17678T G22104T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527375
 2020-04-28 2020-09-03
 Singapore hCoV-19/Singapore/866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- A231G C6310A C6312A G8695R C8829S G11083T C13730T C19524T C23185T C23929T C27297T C28311T AAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29712-

EPI_ISL_527678
 2020-04-28 2020-09-04
 United States hCoV-19/USA/MN-CDC-6221/2020
 C241T C1059T C3037T C8772Y C14408T A23403G G25563T C28969A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527680
 2020-04-28 2020-09-04
 United States hCoV-19/USA/MN-CDC-6233/2020
 C241T C539T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527681
 2020-04-28 2020-09-04
 United States hCoV-19/USA/MN-CDC-6237/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527682
 2020-04-28 2020-09-04
 United States hCoV-19/USA/MN-CDC-6244/2020
 C241T C1059T C1314T C3037T C14408T A20298R A23403G G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527683
 2020-04-28 2020-09-04
 United States hCoV-19/USA/MN-CDC-6247/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527684
 2020-04-28 2020-09-04
 United States hCoV-19/USA/MN-CDC-6250/2020
 C241T C1059T C1812T C3037T C10319T C13665T C14408T G17252A G21372T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527731
 2020-04-28 2020-09-04
 United States hCoV-19/USA/MN-CDC-6566/2020
 C241T C1059T T1930C C3037T A5309G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528414
 2020-04-28 2020-09-07
 United Kingdom hCoV-19/England/20190038604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T13030Y C14408T A23403G G25049K G27598T GGG28881AAC G29348K AAAAAAAAAAAAAA29890-

EPI_ISL_528686
 2020-04-28 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/12B/2020
 C241T C3037T C14408T G23311T A23403G GGG28881AAC

EPI_ISL_528688
 2020-04-28 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/14B/2020
 C241T C3037T C3176T C5512T C14408T G22484T G23311T A23403G GGG28881AAC

EPI_ISL_528690
 2020-04-28 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/16B/2020
 C241T A1430G C3037T T7171C G11083T C12102T C14408T A23403G T24631C C27002T GGG28881AAC A29428G

EPI_ISL_530080
 2020-04-28 2020-09-10
 Spain hCoV-19/Spain/MD-LP83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10206G C14408T A20268G A23403G C29253T G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530206 MT997728
 2020-04-28 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1610/2020
 A1- C241T C1059T G1463A C3037T G7557A C8818T C14408T A20284G C22477T A23403G C23604T G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_537275
 2020-04-28 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC G29300K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537284
 2020-04-28 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B286C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C7772T G10097A C13536T C14408T A23403G C23731T C27513T G28321T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538916
 2020-04-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A98E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T A23403G C28674T GGG28881AAC C29296Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538992
 2020-04-28 2020-09-17
 United Kingdom hCoV-19/England/LEED-2A8211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539824 MW020061
 2020-04-28 2020-09-21
 United States SARS-CoV-2/humans/USA/MN-MDH-1630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1314T C3037T C14408T A23403G G25563T A27821G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539825 MW020062
 2020-04-28 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1631/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_539826 MW020063
 2020-04-28 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1632/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T A27821G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539827 MW020064
 2020-04-28 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1633/2020
 ATTA1- C241T C1059T C3037T C10954T C14408T A23403G G25563T A27821G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_541362
 2020-04-28 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C C29743T GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_541363
 2020-04-28 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2904/2020
 ATTAAAGGTTTA1- C241T G1589A C3037T G11083T C14408T A23403G T27299C GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_542535
 2020-04-28 2020-09-23
 United States hCoV-19/USA/TX-HMH-1109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T C13860T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542755
 2020-04-28 2020-09-23
 United States hCoV-19/USA/TX-HMH-1497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C14408T A23403G G25563T AA29902-

EPI_ISL_542766
 2020-04-28 2020-09-23
 United States hCoV-19/USA/TX-HMH-1516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C27964Y G28980R AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_542768
 2020-04-28 2020-09-23
 United States hCoV-19/USA/TX-HMH-1518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542882
 2020-04-28 2020-09-23
 United States hCoV-19/USA/TX-HMH-1860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G14118T C14408T G15243T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542911
 2020-04-28 2020-09-23
 United States hCoV-19/USA/TX-HMH-1939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4058T C9438T A11451G C14408T C14937T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542914
 2020-04-28 2020-09-23
 United States hCoV-19/USA/TX-HMH-1947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9962T C10319T C14408T C20698T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548963
 2020-04-28 2020-09-28
 Sweden hCoV-19/Sweden/RV-FOI-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C14195A C14408T G19891T C20844T A23403G C25702T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559679
 2020-04-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-483186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C20930T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559694
 2020-04-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-481443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2189T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559697
 2020-04-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-481829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12076T C14408T A23403G G27358T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559974
 2020-04-28 2020-09-28
 United Kingdom hCoV-19/Scotland/EDB3708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G714A A2480G C2558T G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT460119
 2020-04-28 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1099/2020
 ATT1- C241T C1059T G2764T C3037T C4069T C14408T C19011T A23403G G25563T

MT460120
 2020-04-28 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1100/2020
 ATTAAAG1- C1102T C8782T T16950C C17747T A17858G C18060T C27710T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT566435
 2020-04-28 2020-06-04
 Bangladesh SARS-CoV-2/human/BGD/DNAS_CPH_isl_471_BGD/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A1163T T2041C C3037T G4444T G8371T C14408T A23403G T24887C GGG28881AAC A29403G T29848A A29850C -29852TA TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856C

MT566436
 2020-04-28 2020-06-04
 Bangladesh SARS-CoV-2/human/BGD/DNAS_CPH_isl_427_BGD/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A1163T C3037T G4444T G8371T C14408T C15895T A23403G G25906T GGG28881AAC A29403G TAA29848ACT AG29852TA TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MT566437
 2020-04-28 2020-06-04
 Bangladesh SARS-CoV-2/human/BGD/DNAS_CPH_isl_466_BGD/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3688T C14408T C15324T A23403G T29848A ATAGCTT29850- GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT598175
 2020-04-28 2020-06-11
 United States SARS-CoV-2/human/USA/SEARCH-0175-SAN/2020
 ATTAAAGGTTTA1- C241T C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

MT810602
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1123-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T T15817C A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810609
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1132-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810614
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1142-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1594T C3037T C14408T C16762T A23403G G25563T G25660T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810615
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1143-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810628
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1158-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1815G C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810630
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1160-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1815G C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810642
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1177-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C9438T C12132T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810649
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1186-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G9802T C14408T A20268G G21786T A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810650
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1187-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810651
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1188-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810653
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1190-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2973T C3037T C4777T C7011T T10955C C14408T A23403G CCAGATCAGTTT27629- G28551T GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810655
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1192-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G C20451T A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810693
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1266-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C11674T C14408T A20268G G22799A A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810694
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1267-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T C29353T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810758
 2020-04-28 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1476-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7720T C9719A C14408T G17427T G18028T C18395T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810761
 2020-04-28 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1479-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810764
 2020-04-28 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1690-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G C21260T A23403G G24399T C27883T C28603T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810875
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1586-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810890
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1616-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810898
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1627-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C5467T C8389T C12249T C13487T C14408T C17825T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810966
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0261-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810976
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0351-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811428
 2020-04-28 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0932-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2594Y C3037T C4582T C11102T C14408T A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873143
 2020-04-28 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01460/2020
 C241T C1218T C3037T C14408T A23403G C28603T G28899T

MT873259
 2020-04-28 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01552/2020
 G105T C241T T2301C C3037T C8394T C9565T C14408T C18877T A23403G G25563T

MT873290
 2020-04-28 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01544/2020
 G105T C241T C3037T C14408T C18452T C18877T A23403G G25563T C28093T C28757T TTC29728-

MT873338
 2020-04-28 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01543/2020
 C241T C3037T G11083T C14408T C22995A A23403G C28603T G28899T

MT967908
 2020-04-28 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6566/2020
 C241T C1059T T1930C C3037T A5309G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT967931
 2020-04-28 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6221/2020
 C241T C1059T C3037T C8772Y C14408T A23403G G25563T C28969A AAAAAAAAAAAAAAAAAAAAA29883-

MT967933
 2020-04-28 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6233/2020
 C241T C539T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT967934
 2020-04-28 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6237/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT967935
 2020-04-28 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6244/2020
 C241T C1059T C1314T C3037T C14408T A20298R A23403G G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

MT967936
 2020-04-28 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6247/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT967937
 2020-04-28 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6250/2020
 C241T C1059T C1812T C3037T C10319T C13665T C14408T G17252A G21372T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_433488
 2020-04-29 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7FBCF/2020
 C241T C1059T C3037T A12556G C14408T A23403G G25563T G28899C

EPI_ISL_433687
 2020-04-29 2020-04-29
 United Kingdom hCoV-19/England/CAMB-73D10/2020
 A2480G C2558T G11083T C14805T G17590T G26144T

EPI_ISL_433716
 2020-04-29 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7830A/2020
 C241T C355T C1059T C1437T C3037T C6286T T13006C C14408T A23403G A24070T G25563T C25688T C27945T

EPI_ISL_433740
 2020-04-29 2020-04-29
 United Kingdom hCoV-19/England/CAMB-784BC/2020
 C241T C1059T C3037T C9286T A13852G C14408T A23403G G25563T G28899C

EPI_ISL_433747
 2020-04-29 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7855F/2020
 T1030C G11083T C14805T T17247C G26144T

EPI_ISL_433766
 2020-04-29 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7872C/2020
 C241T C1912T C3037T C14408T G14580T G18674A A23403G

EPI_ISL_433838
 2020-04-29 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7AAE5/2020
 C241T C3037T G12838T C14408T G16206T A23403G GGG28881AAC

EPI_ISL_433972
 2020-04-29 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B53E/2020
 C344T A2480G C2558T G11083T A14185T C14805T G26062T G26144T

EPI_ISL_433973
 2020-04-29 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7B54D/2020
 A2480G C2558T T10952A G11083T C14805T T20401G G23868T A25125C G26144T C29769T

EPI_ISL_434007
 2020-04-29 2020-04-29
 United Kingdom hCoV-19/England/CAMB-7C1C0/2020
 C241T G1820A C3037T C14408T A16881G A23403G C26942T GGG28881AAC

EPI_ISL_435474
 2020-04-29 2020-05-05
 United States hCoV-19/USA/CA-SR0176/2020
 C241T C3037T C6401T C14408T T17928C A20268G A23403G C28854T

EPI_ISL_438175
 2020-04-29 2020-05-12
 United States hCoV-19/USA/WA-S622/2020
 C241T C1059T C3037T C14408T G16489T T16617C A23403G G25563T C26204T

EPI_ISL_439317
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3759/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_439319
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3764/2020
 C241T C3037T C14408T A20268G A23403G GG26466TC C28854T

EPI_ISL_439320
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3775/2020
 C241T C3037T A8032G G14274T C14408T C18788T T19839C A23403G C23896T A24862G GGG28881AAC

EPI_ISL_439322
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3781/2020
 C241T C3037T C8078T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_439323
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3783/2020
 C241T C3037T C3543T C14408T C16289T A23403G G25429T

EPI_ISL_439324
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3790/2020
 C241T C3037T C14408T A20268G A23403G C28854T C29541T

EPI_ISL_439326
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3795/2020
 C241T C3037T C13517T C14408T A20268G A23403G C28854T

EPI_ISL_439328
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3798/2020
 C241T G2883A C3037T C3619T C14408T A20268G A23403G G29734C

EPI_ISL_439329
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3801/2020
 C241T C3037T C14408T C18788T T19839C A23403G A24862G GGG28881AAC

EPI_ISL_439330
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3802/2020
 C241T C1377T C3037T C14408T C16289T A23403G G25429T G28077T

EPI_ISL_439331
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3803/2020
 C241T C3037T C14408T A20268G A23403G C28854T C29541T

EPI_ISL_439332
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3817/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_439338
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3849/2020
 C241T C3037T A4269G C14408T A20268G A23403G GG26466TC C28854T G29291A

EPI_ISL_441871
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/England/NOTT-11089B/2020
 C241T C3037T T5406C C14408T G16968T A23403G GGG28881AAC

EPI_ISL_441872
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/England/NOTT-1108AA/2020
 A187G C241T C3037T T8473C C14408T T22369C A23403G C23536T C25046G G28882T

EPI_ISL_441873
 2020-04-29 2020-05-12
 United Kingdom hCoV-19/England/NOTT-1108B9/2020
 C241T A2526C C3037T C10440T C14408T A23403G T25316C GGG28881AAC

EPI_ISL_444054
 2020-04-29 2020-05-13
 United States hCoV-19/USA/CA-CZB-1096/2020
 C8782T C17747T A17858G C18060T A18600T C25603T T28144C

EPI_ISL_444078
 2020-04-29 2020-05-13
 United States hCoV-19/USA/CA-CZB-1120/2020
 C241T C3037T C14408T A23403G C24863T GGG28881AAC

EPI_ISL_444360
 2020-04-29 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AC014/2020
 C241T C3037T C4002T C4206T G9479T G10097A C13536T C14408T A23403G C23731T A25948G GGG28881AAC

EPI_ISL_444361
 2020-04-29 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AC023/2020
 C1314T G11083T C14805T T17247C G26144T T27451A C29171T

EPI_ISL_444363
 2020-04-29 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AC041/2020
 C241T C3037T C4002T C4206T G9479T G10097A C13536T C14408T A23403G C23731T A25948G GGG28881AAC

EPI_ISL_444374
 2020-04-29 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AC120/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_444376
 2020-04-29 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AC14E/2020
 C241T C1059T C1218T C3037T C9286T C14408T A23403G G25563T G28899C

EPI_ISL_444461 MT467245
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC30/2020
 C241T C2836T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_444462 MT467247
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC31/2020
 C241T C3037T C3737T G4866T C12710T C14408T C14425A T21890C A23403G

EPI_ISL_444463 MT467249
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC32/2020
 C241T C3037T C6145T C14408T A23403G G23593T

EPI_ISL_444464 MT467254
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC33/2020
 C241T G2518T C2836T C3037T A12507G C14408T C18877T C22444T A23403G G25563T C26735T G28739T C28854T

EPI_ISL_444465 MT467256
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC34/2020
 T10G C241T C2836T C3037T C14408T C18877T C22444T C23277T A23403G G25563T C26735T C28854T

EPI_ISL_444466 MT467258
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC35/2020
 C241T C2836T C3037T C14408T C18877T C22444T C23277T A23403G G25563T C26735T C28854T

EPI_ISL_444467 MT496972
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC36/2020
 C241T C3037T C14408T T17574A C18877T C21365T A23403G G25563T G25621T C26735T

EPI_ISL_444468 MT496973
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC37/2020
 C241T G840A C3037T C14408T A23403G

EPI_ISL_444469 MT496974
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC38/2020
 C241T C3037T C14408T G16078A C18877T C22444T G23311T A23403G G25563T G25819T C26735T C28854T C29358T

EPI_ISL_444470 MT496975
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC39/2020
 T3C C241T C3037T AA10478CT C14408T C18877T A23403G G25563T C26735T

EPI_ISL_444471 MT467246
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC40/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_444472 MT467248
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC41/2020
 C241T C2836T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_444473 MT467250
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC42/2020
 C241T C3037T C14408T A23403G C24237T

EPI_ISL_444474 MT467251
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC43/2020
 C241T C3037T A3517G C14408T C18877T A23403G C24042T G25563T C26735T C28948T

EPI_ISL_444475 MT467252
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC44/2020
 C241T C3037T C3737T G4866T A6748G C14408T C14425A T21890C A23403G

EPI_ISL_444476 MT467253
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC45/2020
 C241T C2836T C3037T C13536T C14408T C18877T C22444T C23277T A23403G G25563T C26735T A28254C C28854T

EPI_ISL_444477 MT467238
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC46/2020
 C241T C832T C3037T T13914C G14028T C14408T A23403G

EPI_ISL_444479 MT467242
 2020-04-29 2020-05-13
 India SARS-CoV-2/human/IND/GBRC48/2020
 C241T C3037T C14408T T20063C A23403G C23638T

EPI_ISL_447047 MT496990
 2020-04-29 2020-05-16
 India SARS-CoV-2/human/IND/GBRC70/2020
 C241T C3037T C14408T A23403G

EPI_ISL_447049 MT496993
 2020-04-29 2020-05-16
 India SARS-CoV-2/human/IND/GBRC72a/2020
 C241T C2836T C3037T C14408T G16078A C18877T C22444T A23403G G23678T G25563T C26735T C28854T

EPI_ISL_447050 MT496994
 2020-04-29 2020-05-16
 India SARS-CoV-2/human/IND/GBRC72b/2020
 C241T C2836T C3037T C14408T G16078A C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_447051 MT496995
 2020-04-29 2020-05-16
 India SARS-CoV-2/human/IND/GBRC73/2020
 C241T C2836T C3037T C14408T G16078A C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_447053 MT496997
 2020-04-29 2020-05-16
 India SARS-CoV-2/human/IND/GBRC75/2020
 C241T C3037T C14408T G16852T C18877T G19417T G19872T A23403G G25563T C26735T C28948T

EPI_ISL_447055 MT706453
 2020-04-29 2020-05-16
 Georgia SARS-CoV-2/human/GEO/Tb-6598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C6573T C14408T G17679T A23403G G25563T T29855C CTTAGGA29857- AAT29865GGC A29872G AAA29874GCG A29878G AA29880CC AAAA29883TCTC

EPI_ISL_447056 MT786422
 2020-04-29 2020-05-16
 Georgia SARS-CoV-2/human/GEO/Tb-6572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C1059T C3037T C6573T C14408T G17679T A23403G G25563T -29866AGCTTGGGCAT AC29869GG AA29875TT -29880CTTCCCAGCCTGCCTTGCAGTTTGGCAGGATCATGTGATGAATCCTAGCC A29883G AA29887TG A29890G AAAA29892GTGG AAA29898GTG A29902T -29904CATATTTCACTTCCATTCTGAGACGTTTAAGAGTAATTGTGACACATCCA

EPI_ISL_447905
 2020-04-29 2020-05-18
 United States hCoV-19/USA/FL-UF9/2020
 ATTAAAGGTTT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T

EPI_ISL_447939
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/BIRM-5ECE1/2020
 C241T C3037T G10097A C10332T C14408T A23403G C23731T G28580T GGG28881AAC C29296T

EPI_ISL_447955
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1ACFF9/2020
 C241T C3037T C14408T C19140T G22218A A23403G G28851T GGG28881AAC

EPI_ISL_447959
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD040/2020
 C241T C2416T C3037T C4755T A11430G C14408T A21801C A23403G G25563T

EPI_ISL_447963
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD0AA/2020
 C241T C3037T C3817T C14408T A23403G G28086T GGG28881AAC

EPI_ISL_447964
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD0B9/2020
 C241T C3037T C6027T C6582T C14408T A23403G GGG28881AAC

EPI_ISL_447966
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD0E6/2020
 C241T C1059T C1437T C3037T T13006C C14408T A23403G A24070T G25563T C25688T C27945T

EPI_ISL_447967
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD101/2020
 C241T C3037T C14408T A23403G C28789T GGG28881AAC

EPI_ISL_447973
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD189/2020
 C241T C1684T C3037T C4002T G10097A C13536T C14184T C14408T G19086T C21058T A23403G C23731T G24368T GGG28881AAC G29254T

EPI_ISL_447983
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD268/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_447989
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD2E0/2020
 C241T C3037T C6525T C14408T T15555C A23403G G23610A GGG28881AAC

EPI_ISL_448409
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110D14/2020
 G431A ATG1605- G3338T A11474G T14817C C20270T A27488T A29683T G29751C

EPI_ISL_448410
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110D23/2020
 C241T C3037T A9997G C14408T G16141T C22530T A23403G G29140T

EPI_ISL_448412
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110D41/2020
 C6312A G11083T C13730T C23929T C28311T G28487C

EPI_ISL_448413
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110D50/2020
 ATG1605- G1721T G2879T C20270T G26690T T27902C A29683T

EPI_ISL_448414
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110D6F/2020
 G199T C241T A2526C C3037T C10440T C14408T A23403G T25316C G25835T GGG28881AAC

EPI_ISL_448420
 2020-04-29 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110DE7/2020
 C241T C3037T G13690A C14408T A23403G GGG28881AAC

EPI_ISL_451223
 2020-04-29 2020-05-24
 United States hCoV-19/USA/LA-EVTL062/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451224
 2020-04-29 2020-05-24
 United States hCoV-19/USA/LA-EVTL063/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451228
 2020-04-29 2020-05-24
 United States hCoV-19/USA/LA-EVTL067/2020
 C241T C1059T C3037T C14408T C18755T A23403G G25563T -26494T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451229
 2020-04-29 2020-05-24
 United States hCoV-19/USA/LA-EVTL068/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454215
 2020-04-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454216
 2020-04-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454217
 2020-04-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454218
 2020-04-29 2020-05-28
 Portugal hCoV-19/Portugal/PT0494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454631 MT533228
 2020-04-29 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A38R C241T C3037T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_454632 MT533229
 2020-04-29 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G2764T C3037T G4257K G4709S C4897T G5950K C14408T G20521S C23188Y A23403G G23522S G25563T C25578Y G25947K C27294T G28793K TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_454633 MT533230
 2020-04-29 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3860K G11083K C14408T A23403G C27707Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_454831
 2020-04-29 2020-05-29
 India hCoV-19/India/SMSCOV141/2020
 C241T C3037Y C4809T C6310M C6312M G11083K C14408T G20102T C24642T C24909S C28311Y AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_456459 MT612150
 2020-04-29 2020-06-02
 Australia SARS-CoV-2/human/AUS/VIC1495/2020
 C241T T446C C3037T T7438C C14178Y C14408T C20132T G22403K A23403G C29353T TCACCGAGGCCACGCGGAGTACGATCGAGTGTA29729-

EPI_ISL_457240
 2020-04-29 2020-06-02
 United Kingdom hCoV-19/England/EXET-1368F9/2020
 C241T C3037T G4936A C9592T C11674T C14408T A23403G C25350T T25556G C25572T

EPI_ISL_457373 LR821995
 2020-04-29 2020-06-02
 United Kingdom NORW-EAD7E
 ATT1- C241T C1943T C2704T C3037T C14408T A15249G A23403G C25047T GGG28881AAC

EPI_ISL_457375 LR814196
 2020-04-29 2020-06-02
 United Kingdom NORW-EAD9C
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A2775G C2940T C3037T A3219T C14408T A18442R C21648T A23403G C25350T

EPI_ISL_457378 LR814190
 2020-04-29 2020-06-02
 United Kingdom NORW-EADD8
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T A3951G G11221T C14408T C19170T G19509A G22841T A23403G G28077T GGG28881AAC

EPI_ISL_457379 LR814210
 2020-04-29 2020-06-02
 United Kingdom NORW-EADF6
 ATTAAAGGTTTA1- C241T C3037T A9749G C14408T A23403G A24232G G25429T G27788T

EPI_ISL_457382 LR814261
 2020-04-29 2020-06-02
 United Kingdom NORW-EAE20
 ATTA1- C241T A2775G C2940T C3037T C14408T C21648T A23403G

EPI_ISL_457386 LR813996
 2020-04-29 2020-06-02
 United Kingdom NORW-EAE7B
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A2775G C2940T C3037T C14408T C21648T A23403G

EPI_ISL_457387 LR814211
 2020-04-29 2020-06-02
 United Kingdom NORW-EAE8A
 ATTA1- C241T A476G C3037T G4126A C10507T C14408T A16638G C18877T A23403G G25563T

EPI_ISL_457393 LR814233
 2020-04-29 2020-06-02
 United Kingdom NORW-EAF2D
 A1- C241T C3037T ACAGAAGAGGTTGGCCAC6524- C14408T G21701T G22992A A23403G GGG28881AAC

EPI_ISL_457401 LR814251
 2020-04-29 2020-06-02
 United Kingdom NORW-EAFA5
 ATTAAAGGTTTATACCT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C24729T GGG28881AAC C29774T

EPI_ISL_457402 LR821942
 2020-04-29 2020-06-02
 United Kingdom NORW-EAFC3
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C9977A C13694T C14408T G16957K G17608T A23403G G24197T G25429T

EPI_ISL_457403 LR821903
 2020-04-29 2020-06-02
 United Kingdom NORW-EAFD2
 AT1- C241T A476G C3037T C3608Y C10507T C14408T A16638G C18877T A23403G G25563T

EPI_ISL_457408 LR821998
 2020-04-29 2020-06-02
 United Kingdom NORW-EB038
 ATT1- C241T C3037T C6385T C14408T A23403G G25912T GGG28881AAC

EPI_ISL_458033
 2020-04-29 2020-06-03
 India hCoV-19/India/CCMB_C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8917T G9389A C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458034
 2020-04-29 2020-06-03
 India hCoV-19/India/CCMB_C11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8917T G9389A C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458035
 2020-04-29 2020-06-03
 India hCoV-19/India/CCMB_C13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C6312A G11083T C13730T C14318T G23236T C23929T G27358T C28311T G29745A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458036
 2020-04-29 2020-06-03
 India hCoV-19/India/CCMB_C10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8917T C13115T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458037
 2020-04-29 2020-06-03
 India hCoV-19/India/CCMB_C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T1094C C3037T C8917T C14408T C18129T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458038
 2020-04-29 2020-06-03
 India hCoV-19/India/CCMB_C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458249
 2020-04-29 2020-06-04
 United States hCoV-19/USA/CA-SR0366/2020
 C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_458253
 2020-04-29 2020-06-04
 United States hCoV-19/USA/CA-SR0370/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_458254
 2020-04-29 2020-06-04
 United States hCoV-19/USA/CA-SR0371/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_458271
 2020-04-29 2020-06-04
 United States hCoV-19/USA/CA-SR0398/2020
 C241T C3037T A12875G C14408T A20268G A23403G C28854T

EPI_ISL_460572
 2020-04-29 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20524/2020
 C241T C1059T G1563A C3037T C7528T C8640Y C14408T A23403G G25563T

EPI_ISL_460935
 2020-04-29 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T C10408T G11596T C14408T C18555T G22599A A23403G A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461179
 2020-04-29 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461239
 2020-04-29 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T8166C C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461276
 2020-04-29 2020-06-06
 Netherlands hCoV-19/Netherlands/Zeeland_37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G487A T514C ATG1605- T10330C A14052G C17410T C22675T G27762C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461332
 2020-04-29 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C13011T C14408T G20568A A23403G A26530G G28378T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461343
 2020-04-29 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18972T C21855T A23403G C26822T G29422T G29690T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461820
 2020-04-29 2020-06-06
 United Kingdom hCoV-19/England/NORW-E90FE/2020
 ATT1- C241T C3037T T7292C C14408T A23403G A24232G G25429T T27207C

EPI_ISL_461836
 2020-04-29 2020-06-06
 United Kingdom hCoV-19/England/NORW-E98E7/2020
 ATTAAAGGT1- C241T C3037T C14408T G21123K G22992A A23403G GGG28881AAC

EPI_ISL_461839
 2020-04-29 2020-06-06
 United Kingdom hCoV-19/England/NORW-E9999/2020
 AT1- C241T C3037T T7292C G11083T C14408T A23403G A24232G G25429T T27207C

EPI_ISL_461884
 2020-04-29 2020-06-06
 United Kingdom hCoV-19/England/NORW-EAB65/2020
 ATTA1- C241T C3037T A9749G G11083T C14408T A23403G A24232G G25429T G27788T

EPI_ISL_461999
 2020-04-29 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C0CF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7736A C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462021
 2020-04-29 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C5F64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G614A C3037T T11457C C14408T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462325
 2020-04-29 2020-06-08
 Singapore hCoV-19/Singapore/207/2020
 C6310A C6312A G11083T C13730T C19524T A19941G T21573C C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462326
 2020-04-29 2020-06-08
 Singapore hCoV-19/Singapore/208/2020
 C3787T C6310A C6312A G11083T C11173T C13730T C19524T C23185T C23929T G24842A C28311T AAAAAAAAAAAA29892-

EPI_ISL_462685 MT585027
 2020-04-29 2020-06-08
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20603/2020
 C241T C1059T G2900T C3037T T4654Y C14408T T20037C A23403G G25563T AAAAAAAAAAAA29892-

EPI_ISL_462689 MT585042
 2020-04-29 2020-06-08
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20607/2020
 C241T C3037T C14408T C15540T A23403G C25665T G28325T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_462701 MT585044
 2020-04-29 2020-06-08
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20619/2020
 C21Y C241T C3037T C14408T C15540T A23403G C25665Y G28325T

EPI_ISL_462990
 2020-04-29 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/02-Banja Luka/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3270C T4011C A9993T C14408T T22521G A23403G T24501C C24621T C24642T C27046T T27093A A27770T C27855T C28194T G28329A G28395C GGG28881AAC G29862C G29868C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_463448 MT642322
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S958/2020
 AT1- C241T C1059T C3037T A12557C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_463483 MT642303
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S993/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463484 MT642425
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S994/2020
 ATTAAAGGTTTAT1- G1401A C8782T G17523C C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463485 MT642198
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S995/2020
 ATTAAAGGTTTAT1- C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463492 MT642262
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1002/2020
 A1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_463493 MT642150
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1003/2020
 AT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC G29764T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463494 MT642317
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1004/2020
 ATT1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463495 MT642215
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1005/2020
 ATTAAAGGTT1- C241T C3037T A5538T C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463498 MT642091
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1008/2020
 ATTAAAGG1- G354A C2070T C8782T C17747T A17858G C18060T C19524T T19839C G24075A A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463500 MT642385
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1010/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463501 MT642347
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1011/2020
 AT1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463502 MT642188
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1012/2020
 ATTAAAGGTTTAT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463506 MT642431
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1016/2020
 ATTAAAGGTT1- G354A C2070T C8782T C17747T A17858G C18060T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463510 MT642093
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1020/2020
 AT1- CG241TT C3037T C4809T C14408T T19839C A23403G A27373T T28318C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_463512 MT642122
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1022/2020
 AT1- G354A C2070T C8782T C17747T A17858G C18060T C19524T T19839C G24075A A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463555 MT642323
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1065/2020
 ATTAAAGGT1- G1401A A3190G C8782T C17747T A17858G C18060T T28144C C29420T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463556 MT642344
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1066/2020
 AT1- C8782T G15406A C17010T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463557 MT642199
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1067/2020
 ATTAAAGGTTTATA1- C241T C3037T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463558 MT642181
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1068/2020
 AT1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T G29315T G29648T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463567 MT642342
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1077/2020
 ATTAAAGGTTT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463569 MT642197
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1079/2020
 ATTAAAG1- C241T C1059T C3037T C12880T C14408T A20475G C21575T A23403G G25563T C26013T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463570 MT642092
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1080/2020
 AT1- C241T C1059T C3037T C12880T C14408T T16473A A20475G C21575T A23403G G25563T C26013T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463571 MT642210
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1081/2020
 ATTAAAG1- C241T C1059T C3037T C12880T C14408T A20475G C21575T A23403G G25563T C26013T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463572 MT642151
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1082/2020
 ATTAAA1- C241T C1059T C3037T C14408T C17876T A20475G C21575T A23403G G25563T C26013T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463573 MT642193
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1083/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C12880T C14408T A20475G C21575T C23248T A23403G G25563T C26013T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463574 MT642318
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1084/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463575 MT642275
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1085/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463576 MT642137
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1086/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A15426G C17690T C18029T C19029T A20184C A23403G G25563T T29410C G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463577 MT642129
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1087/2020
 ATTAAAGGTTTAT1- G354A C2070T C8782T C17747T A17858G C18060T T19839C G24075A A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463579 MT642239
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1089/2020
 ATTAAAGGTTTATACCTT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_463580 MT642256
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1090/2020
 ATTAAAGGTTTATACC1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_463581 MT642136
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1091/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C12880T C14408T A20475G C21575T A23403G G25563T C26013T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463582 MT642085
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1092/2020
 AT1- C241T C1059T C3037T A6708G C12880T C14408T A20475G C21575T A23403G G25563T C26013T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463662 MT642147
 2020-04-29 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1172/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C12880T C14408T A20475G C21575T A23403G G25563T C26013T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_464064
 2020-04-29 2020-06-11
 Canada hCoV-19/Canada/ON-UHTC_0081/2020
 C241T C1059T C3037T C11074T G11083T C14408T A23403G G25217T C25487T G25563T

EPI_ISL_465710
 2020-04-29 2020-06-11
 United Kingdom hCoV-19/England/20186120904/2020
 C241T C2416T C3037T A12402G C14408T C14786T G20578T T22170W A23403G C24130T G25563T C25613T

EPI_ISL_466648 MT712863
 2020-04-29 2020-06-11
 United States SARS-CoV-2/human/USA/CA-IGI-0045/2020
 AT1- C241T C3037T C5467T C8389T G8785A C14408T A23403G G25563T

EPI_ISL_468479 MT628206
 2020-04-29 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1534/2020
 C37Y C241T C379A C835T C1059T C3037T C14408T G15380K A15979R A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_468494 MT628218
 2020-04-29 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1551/2020
 ATTAA1- C241T C3037T G4631A G11596T C14408T G18898T A23403G T25686A GGG28881AAC

EPI_ISL_468749
 2020-04-29 2020-06-17
 Chile hCoV-19/Chile/Santiago-04917/2020
 C241T C3037T C14408T C20199T A23403G G29779T

EPI_ISL_468751
 2020-04-29 2020-06-17
 Chile hCoV-19/Chile/Santiago-05015/2020
 C241T C3037T C14408T A23403G G25563T

EPI_ISL_469867
 2020-04-29 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-101763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9967T A10323G C14408T A23403G TTA27795- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469874
 2020-04-29 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-1015A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14793T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469883
 2020-04-29 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-1010D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A314T C3037T C14408T C14676T A20268G A23403G C28854T C28868T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_469887
 2020-04-29 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-101569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G C21621T T22967G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471562
 2020-04-29 2020-06-22
 Brazil hCoV-19/Brazil/SP-523/2020
 G24C C241T G2585T C3037T C12053T C14408T C19875T A23403G G25088T GGG28881AAC G29862A AAAAAAAAAAAAA29891-

EPI_ISL_471581
 2020-04-29 2020-06-22
 Brazil hCoV-19/Brazil/SP-524/2020
 T25A C241T C3037T C14408T C21575T A23403G C24904T G25088T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_471582
 2020-04-29 2020-06-22
 Brazil hCoV-19/Brazil/BarCode11C37_P12519C525_AS/2020
 C241T C3037T C14408T A23403G G25088T C28253T C28744T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_471583
 2020-04-29 2020-06-22
 India hCoV-19/India/CCMB_C20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T A563T C3037T C14408T C18877T A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471685
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20661/2020
 C241T C1059T G2900T C3037T T4654Y C14408T C16887Y C18681T T20037C A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_471686
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20662/2020
 C241T C1059T C3037T C14408T C16799A A23403G G25563T

EPI_ISL_471687
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20663/2020
 C241T C1059T G2900T C3037T T4654Y C14408T T20037C A23403G G25563T AAAAAAAAAA29894-

EPI_ISL_471689
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20665/2020
 C241T C1059T G2900T C3037T T4654Y C14408T T20037C A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_471692
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20668/2020
 C241T C1059T C3037T A13215G C14408T C16799A G17252A G17488A A23403G G25563T C26585T

EPI_ISL_471770
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20749/2020
 C241T C1059T G2900T C3037T T4654Y C14408T T20037C A23403G G25563T C28836Y

EPI_ISL_471771
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20750/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_471772
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20751/2020
 C241T C1059T C2644Y G2900K C3037T C7420Y C14408T T20037Y A23403G G25563T

EPI_ISL_471812
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20791/2020
 C241T C1059T C3037T T4654Y C14408T T20037C A23403G G25563T

EPI_ISL_471813
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20792/2020
 C241T C1059T C3037T T4654Y T8323Y C14408T T20037C A23403G G25563T

EPI_ISL_471814
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20793/2020
 C36Y C180T C241T C1059T G2900T C3037T T4654Y C14408T T20037C A23403G G25563T

EPI_ISL_471815
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20794/2020
 C241T C1059T C1426Y C3037T T4654Y C14408T T20037Y A23403G G25563T

EPI_ISL_471817
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20796/2020
 C241T C1059T C3037T T4654Y C14408T T20037C A23403G G25563T

EPI_ISL_471818
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20797/2020
 C241T C1059T C2558T C3037T C3653T C14408T A23403G G25563T

EPI_ISL_471872
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20851/2020
 C241T C1059T C3037T C14408T T20037Y A23403G G25563T

EPI_ISL_471877
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20856/2020
 C241T C1059T G2900T C3037T T4654Y C14408T T20037C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_471878
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20857/2020
 C241T C1059T C3037T T4654Y C14408T T20037C A23403G G25563T

EPI_ISL_471879
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20858/2020
 C241T C1059T G2900T C3037T T4654Y C14408T T20037C A23403G G25563T AAAAAAAAA29895-

EPI_ISL_471880
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20859/2020
 C241T C1059T C3037T T4654Y C14408T T20037C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_471881
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20860/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_471882
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20861/2020
 C241T C1059T C3037T T4654Y C14408T T20037C A23403G G25563T AAAAAAAAAAA29893-

EPI_ISL_471884
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20863/2020
 C241T C1059T G2900T C3037T T4654Y C14408T T20037C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_471886
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20865/2020
 C241T C1059T G2900T C3037T T4654Y C14408T T20037C A23403G G25563T

EPI_ISL_471889
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20868/2020
 C241T C1059T C3037T C14408T G21795K A23403G G25563T

EPI_ISL_471890
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20869/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_471910
 2020-04-29 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20889/2020
 C241T C1059T G2900T C3037T T4654Y C14408T T20037C A23403G G25563T AA29902-

EPI_ISL_471932
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/England/EXET-136ECA/2020
 C203T C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_471936
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/England/EXET-136F4F/2020
 C241T C1185T C3037T C14408T C18029T C20204T A23403G GGG28881AAC

EPI_ISL_473865
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5875/2020
 C241T C3037T A3881G C14408T A23403G C25350T

EPI_ISL_473867
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5892/2020
 C241T C3037T C10798A G10870T C13862T C14408T A23403G C28836T

EPI_ISL_473869
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5894/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_473870
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5900/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_473976
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163653/2020
 A1- C21T C241T C829T C1059T C3037T G12769T C14408T A23403G G25563T G27415A G28371T C29546T

EPI_ISL_473981
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1636CC/2020
 ATTA1- C241T C3037T C3373A C4754T C11195T C14408T A23403G GGG28881AAC

EPI_ISL_473984
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1636F9/2020
 C241T C2232T C3037T C14408T C14877T C19185T C22713Y A23403G C24034T T28382C GGG28881AAC

EPI_ISL_473993
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16379C/2020
 ATTAAAGGT1- C241T C829T C1059T C3037T C14408T A23403G G25563T G26909S G27415A G28371T

EPI_ISL_474007
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16387B/2020
 ATT1- C222T C241T C3037T C8964T C13274T C14097T C14408T C21780T A23403G GGG28881AAC

EPI_ISL_474046
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163B54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C9438T C14408T A23403G GGG28881AAC G29777T

EPI_ISL_474100
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163EE2/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G1589R C3037T C14408T A23403G G25429T A27648G G29474T

EPI_ISL_474101
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163EF1/2020
 ATT1- C241T C829T C1059T C3037T C4543T C14408T A23403G G25563T G27415A G28371T

EPI_ISL_474110
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163F94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T G1589R C3037T C14408T A23403G G25429T G29474T

EPI_ISL_474156
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1642D6/2020
 ATT1- C241T C3037T C9438T C14408T A23403G GGG28881AAC G29777T

EPI_ISL_474161
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16432E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G219T C241T C829T C1059T C3037T G3994A G4300K C14408T G15543K A23403G G25563T G27415A G28371T

EPI_ISL_474162
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16434C/2020
 ATTA1- C241T C3037T C4780T G14268A C14408T G21624T A23403G G24368K G25598T C25665T GGG28881AAC

EPI_ISL_474179
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164458/2020
 C241T C2232T C3037T C13458T C14408T C14877T C19185T A23403G C24034T C25831T T28382C GGG28881AAC

EPI_ISL_474189
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T AAGTCATTT686- C3037T A10075W C14408T A23403G C26534T C28854T

EPI_ISL_474217
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1646DA/2020
 A1- C241T C3037T C14408T A23403G G26062T GGG28881AAC

EPI_ISL_475396
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C6F27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8182C C12973T C14408T G22427A A23403G C26464T G27441T GGG28881AAC ACATAGCACAAGTAGATGTAGTTAACTTTAATCTC29634- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475445
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CC440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28423A G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475454
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CD245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18713T A20323G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475477
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CF498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1190T C3037T C10186T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475508
 2020-04-29 2020-06-23
 United Kingdom hCoV-19/England/SHEF-D3297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5869T G7328T C14408T C14913T C16101T A18616G A23403G C26028T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476041
 2020-04-29 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20905/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26031T

EPI_ISL_476042
 2020-04-29 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20906/2020
 C241T C1059T G2900T C3037T T4654Y C14408T T20037C A23403G G25563T

EPI_ISL_476043
 2020-04-29 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20907/2020
 C241T C1059T C3037T T4654Y C14408T T20037C A23403G G25563T

EPI_ISL_476044
 2020-04-29 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20908/2020
 C241T C1059T C3037T T4654Y C10029Y C14408T T15348W T20037C A23403G G25563T A29869M

EPI_ISL_476045
 2020-04-29 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20909/2020
 C241T C1059T G2900T C3037T T4654C C14408T A18579R T20037C A23403G G25563T

EPI_ISL_476046
 2020-04-29 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20910/2020
 C241T C1059T C3037T T4654C C14408T T20037C A23403G G25563T G28073T

EPI_ISL_476048
 2020-04-29 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20912/2020
 C241T C1059T C3037T A11439G C14408T C16799A C20555T A23403G G25563T

EPI_ISL_476050
 2020-04-29 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20914/2020
 C241T C1059T G2900T C3037T T4654Y C14408T T20037C A23403G G25563T

EPI_ISL_476115 LR824523 LR861083
 2020-04-29 2020-06-25
 Switzerland 140067
 C241T C3037T C14408T C15324T A19298W T22426K TAGACT22428KMKWMK T22435K CACTT22437MMMKK T22516W A23403G C25207T

EPI_ISL_476116 LR824515 LR861086
 2020-04-29 2020-06-25
 Switzerland 140068
 C241T C1473Y C3037T C14408T C15324T C19862T C19961Y A21176W T22516W A23403G G28690T A28802M GG28805KK G28808D G28817K G28827K A28856M A28886M T28897W G28985R G29579R

EPI_ISL_476117 LR824518 LR861072
 2020-04-29 2020-06-25
 Switzerland 140069
 C241T C3037T C4543Y C10893T C14408T C15081Y C15720Y G18697R A19298W C19402M G19690T A20753G G21463R C21575Y C21639Y C22347M T22447W A23403G C27920Y

EPI_ISL_476849
 2020-04-29 2020-06-26
 India hCoV-19/India/DRDE 1794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C344T C3037Y C6312A T8022K G11083K A12414R C13730T C18687T T22515Y C22713Y C23929T C28253Y C28311T A29406T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476995
 2020-04-29 2020-06-27
 Belgium hCoV-19/Belgium/rega-0429426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1228A C1627T C3037T C14408T C14980T C15324T A23403G C27737T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477277
 2020-04-29 2020-06-29
 United States hCoV-19/USA/MN-MDH-1187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C3737T C14408T A23403G G24199C G25563T A26183G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_477638 MT679162
 2020-04-29 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0422/2020
 ATT1- C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_477639 MT679163
 2020-04-29 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0423/2020
 AT1- C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T C29870A

EPI_ISL_477640 MT679164
 2020-04-29 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0424/2020
 AT1- C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T

EPI_ISL_477641 MT679165
 2020-04-29 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_477643 MT679167
 2020-04-29 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0427/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477644 MT679168
 2020-04-29 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_477645 MT679169
 2020-04-29 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0429/2020
 ATTA1- C241T C1059T C1191T C3037T C14408T C21057T A23403G G25563T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_477768
 2020-04-29 2020-06-30
 United Kingdom hCoV-19/England/BIRM-61410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T G13627T C14585T C14805T C15540T G26144T A28338G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477769
 2020-04-29 2020-06-30
 United Kingdom hCoV-19/England/BIRM-6142F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22570T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477776
 2020-04-29 2020-06-30
 United Kingdom hCoV-19/England/BIRM-61568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22570T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478531
 2020-04-29 2020-06-30
 United Kingdom hCoV-19/England/NORT-284020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12546T C14408T A23403G T26837C GGG28881AAC G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479026
 2020-04-29 2020-06-30
 United Kingdom hCoV-19/England/OXON-B15A5/2020
 C241T C1059T C3037T C6627T A11740T C14408T G18984T A23403G C24023T G25563T G29291A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_479030
 2020-04-29 2020-06-30
 United Kingdom hCoV-19/England/OXON-B160C/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC

EPI_ISL_479132
 2020-04-29 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2261/2020
 C241T T886C C3037T C6723T G12202T C14408T A23403G G25647T C25854T C26681T GGG28881AAC A29558T

EPI_ISL_479507
 2020-04-29 2020-06-30
 India hCoV-19/India/NIV-17002/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C9166T C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479508
 2020-04-29 2020-06-30
 India hCoV-19/India/NIV-17547/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T G19656T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480224
 2020-04-29 2020-07-01
 Bulgaria hCoV-19/Bulgaria/10/2020
 C241T C3037T C7528T C9319T C9521T G11083T C14408T G22021T A23403G GGG28881AAC

EPI_ISL_480242
 2020-04-29 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV089/2020
 C241T C3037T C13517T C14408T A23403G C28651T GGG28881AAC

EPI_ISL_480301
 2020-04-29 2020-07-01
 Bulgaria hCoV-19/Bulgaria/18/2020
 C241T C3037T C9319T G11083T C12374T C14408T C16289T T19485C G22021T A23403G GGG28881AAC

EPI_ISL_481231
 2020-04-29 2020-07-02
 Belgium hCoV-19/Belgium/UGent-140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T A23403G G25563T A28877G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481637
 2020-04-29 2020-07-03
 Finland hCoV-19/Finland/29A53S/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T GGCCACGCGGAGTACGATCGAGTG29736- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481638
 2020-04-29 2020-07-03
 Finland hCoV-19/Finland/29A89S/2020
 C241T C1059T C3037T C14408T C20970A A23403G G24140T G24368T G25563T C27879T C29762T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482101
 2020-04-29 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-101402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1938T C3037T C14408T A21532R T22150C A23403G C28706T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482391
 2020-04-29 2020-07-03
 United States hCoV-19/USA/OR-PROV-127/2020
 C241T TGGTCATGTTATGGT508- C1059T C3037T T3312C C14408T A23403G G25563T

EPI_ISL_482392
 2020-04-29 2020-07-03
 United States hCoV-19/USA/OR-PROV-128/2020
 C241T C1059T C3037T C14408T C18086T A23403G G25563T A26528T A28492T

EPI_ISL_482393
 2020-04-29 2020-07-03
 United States hCoV-19/USA/OR-PROV-129/2020
 C241T C3037T C10626T C14408T A23403G C28045T C28453T GGG28881AAC

EPI_ISL_483205
 2020-04-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0531-SAN/2020
 ATTAAAGGTTTAT1- C241T C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T

EPI_ISL_483210
 2020-04-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0538-SAN/2020
 ATTAAAGG1- C241T C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T

EPI_ISL_483224
 2020-04-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0562-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T G28986T C29546T

EPI_ISL_483284
 2020-04-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0659-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C379A C1059T G1820A T2602C C3037T G3482A G4657A C7528T C14408T G21578T A23403G C25047A G25563T

EPI_ISL_483285
 2020-04-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0660-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T T3282C C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483294
 2020-04-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0675-IPL/2020
 A1- C241T C379A C1059T C3037T G4657A C14408T G21578T A23403G C25482T G25563T A27086G

EPI_ISL_483295
 2020-04-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0678-IPL/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_483330
 2020-04-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0732-SAN/2020
 ATTAAAGGTTTATACC1- C241T C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T

EPI_ISL_483405
 2020-04-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0902-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6813T C14408T A20268G A23403G T27222C C28854T

EPI_ISL_483407
 2020-04-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0905-IPL/2020
 ATTAAAGGTTTATAC1- C241T C379A C1059T C3037T G4657A C14408T G21578T A23403G C25482T G25563T A27086G

EPI_ISL_483414
 2020-04-29 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0921-IPL/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C14408T A20268G C21621T A23403G G23793T G25785T C28854T

EPI_ISL_484325
 2020-04-29 2020-07-08
 United Kingdom hCoV-19/England/NORT-29F541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1389G C1912T C3037T C14408T A23403G T25248C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484327
 2020-04-29 2020-07-08
 United Kingdom hCoV-19/England/NORT-29F6C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484400
 2020-04-29 2020-07-08
 United Kingdom hCoV-19/England/NOTT-1125CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A C6627T C8660T C10626T A10948G G12917A C14408T C17649T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484402
 2020-04-29 2020-07-08
 United Kingdom hCoV-19/England/NOTT-1125ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A C6627T C8660T C10626T A10948G G12917A C14408T C17649T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486182 MT750385
 2020-04-29 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1883/2020
 C241T C1059T C3037T C14408T C19973T A23122R A23403G G25563T T25902W T25908W G25913S G29384T T29867M

EPI_ISL_486183 MT750386
 2020-04-29 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1884/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T T25902W G29384T A29860W T29867Y

EPI_ISL_486252 MT750433
 2020-04-29 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1985/2020
 AT1- C241T C3037T G10697R C14408T G21255C A23403G GGG28881AAC G28960T

EPI_ISL_486253 MT750434
 2020-04-29 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G21255C A22904H A23122R A23403G T25902W T25908W G25913S GGG28881AAC G28960T T29867M

EPI_ISL_486264 MT750442
 2020-04-29 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C622T C3037T T4711C A6709G C13005T C14408T G21777R A22320R A23122R A23403G T25902W T25908W G25913S GGG28881AAC

EPI_ISL_486275 MT750450
 2020-04-29 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2023/2020
 ATTAAAGGTTTATACCT1- C241T C320S C379A C1059T C3037T C14408T G17049K A19779R C22224T A22934C A23122M C23230T A23403G G25563T T25902W T25908W G25913S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486399
 2020-04-29 2020-07-10
 India hCoV-19/India/nimh-7817/2020
 ATT1- AT12CA A26C AA29CT C1281T C6312A G11083T C13730T C16092T G16943T C23929T G25437T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486412
 2020-04-29 2020-07-10
 Latvia hCoV-19/Latvia/029/2020
 C241T C3037T C7765T A10291G C14408T G15780A G18412T T19839C C21575T T22238G A23403G G25471T G28685T GGGG28881AACT

EPI_ISL_486419
 2020-04-29 2020-07-10
 Latvia hCoV-19/Latvia/036/2020
 C241T C1701T C3037T TG13575CT C14408T A23403G C25831T GGG28881AAC

EPI_ISL_486420
 2020-04-29 2020-07-10
 Latvia hCoV-19/Latvia/037/2020
 C241T C3037T TG13575CT C14408T A23403G C25831T GGG28881AAC

EPI_ISL_487651
 2020-04-29 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8937T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487691
 2020-04-29 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C556T C3037T G8536A C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487758
 2020-04-29 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3737T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487777
 2020-04-29 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A G10870K C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487945
 2020-04-29 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7814C C14408T G18213T A18818G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488051
 2020-04-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-29F71E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6768G G7798T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488110
 2020-04-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-297ED5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C3037T C8334T A10194C C14408T A20465R A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488153
 2020-04-29 2020-07-14
 United Kingdom hCoV-19/England/NORT-297F2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C3037T C8334T A10194C C14408T A23403G G25855T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489888 EPI_ISL_491084
 2020-04-29 2020-07-14
 Romania hCoV-19/Romania/ROSV_5259/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C4406T C4810T C14408T A20268G A23403G C26124T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_490601
 2020-04-29 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C5EB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T141C C3037T C7029T C8752T C14408T C15752T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490605
 2020-04-29 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C6EFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2940T C3037T C10341T C14408T G17721T C19524T T21467C A23403G T28693C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490628
 2020-04-29 2020-07-15
 United Kingdom hCoV-19/England/SHEF-CDF6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17278T G18803T C21614T C23216T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491652
 2020-04-29 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB3824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491676
 2020-04-29 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB3776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8032G C14408T C18788T T19839C A23403G A24862G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492033
 2020-04-29 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_1640/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G G25907T T27299C GGG28881AAC T29148C TAATA29848- G29853A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_492037
 2020-04-29 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_11784/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C6286T C14408T A23403G C25824T T27299C GGG28881AAC T29148C TC29856CT T29859C GGAG29861TTTA ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_492038
 2020-04-29 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_11785/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T C20825T A23403G T27299C GGG28881AAC T29148C T29848A ATAGCTT29850- GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_492039
 2020-04-29 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_11786/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C3429T C14267T C14408T A19182G A23403G T27299C GGG28881AAC T29148C T29848A ATAGCTT29850- GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_492319
 2020-04-29 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18543DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492325
 2020-04-29 2020-07-20
 United Kingdom hCoV-19/England/BRIS-18544AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493517
 2020-04-29 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T950C C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494414
 2020-04-29 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494492
 2020-04-29 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1320/2020
 ATTAAAGGT1- C241T C1059T C3037T A8771G C14408T C14818T C16762T A23403G G25563T

EPI_ISL_494495
 2020-04-29 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1329/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T C14818T C16762T A23403G G25563T

EPI_ISL_494496
 2020-04-29 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1332/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T C14818T C16762T A23403G G25563T

EPI_ISL_494520 MT786819
 2020-04-29 2020-07-22
 United States SARS-CoV-2/human/USA/IN-QDX-192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T T9403A C14408T A23403G T29008C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494545 MT786844
 2020-04-29 2020-07-22
 United States SARS-CoV-2/human/USA/TX-QDX-190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494546 MT786845
 2020-04-29 2020-07-22
 United States SARS-CoV-2/human/USA/TX-QDX-191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2485T C3037T C4423T C5622T C11750T C14408T A18153G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495384 MT791920
 2020-04-29 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0478/2020
 ATTA1- C241T C1059T C2536T C3037T C14408T G16852T T21111C A23403G G25563T C27964T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_495443
 2020-04-29 2020-07-22
 Turkey hCoV-19/Turkey/KU-033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C7765T C8326T C14408T C17690T C18877T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_496374
 2020-04-29 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28854T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_496375
 2020-04-29 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7768T C11575T C14408T C17470T G19962T A20268G A23403G C28854T

EPI_ISL_496376
 2020-04-29 2020-07-24
 Mexico hCoV-19/Mexico/ALSR-1715/2020
 ATTAAAGGT1- C241T C3037T C7768T C11575T C14408T G14653T G19072T A20268G A23403G C25721T C28854T

EPI_ISL_498721 MT806782
 2020-04-29 2020-07-27
 United States SARS-CoV-2/human/USA/IA-QDX-249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498722 MT806783
 2020-04-29 2020-07-27
 United States SARS-CoV-2/human/USA/IL-QDX-248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3328A C10188T C13517T C14408T C15352T C21575T TG21823CA A23403G T24982C G25563T C27145T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498724 MT806785
 2020-04-29 2020-07-27
 United States SARS-CoV-2/human/USA/IL-QDX-259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5183T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498726 MT806787
 2020-04-29 2020-07-27
 United States SARS-CoV-2/human/USA/IN-QDX-251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7892C C14408T A23403G G25563T G28913T G29764A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501027
 2020-04-29 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1065BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G713T C1968Y C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501033
 2020-04-29 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1065EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16859Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507024 MT820482
 2020-04-29 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KAIMRC59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- C241T C3037T C14408T C18877T A23403G G25563T C26735T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_507206
 2020-04-29 2020-08-03
 Russia hCoV-19/Russia/Novosibirsk-RII27312S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C26833T A28874T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507207
 2020-04-29 2020-08-03
 Russia hCoV-19/Russia/Novosibirsk-RII27313S/2020
 ATTAAAGGTTTATACC1- C241T C3037T C12651T C14408T C16985T A23403G G23755T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_507208
 2020-04-29 2020-08-03
 Russia hCoV-19/Russia/Novosibirsk-RII27314S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1860T C3037T C14408T A23403G A28874T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507209
 2020-04-29 2020-08-03
 Russia hCoV-19/Russia/Novosibirsk-RII27315S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1860T C3037T C14408T A23403G A28874T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507212
 2020-04-29 2020-08-03
 Russia hCoV-19/Russia/Novosibirsk-RII27318S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G A28874T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507224
 2020-04-29 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII10066V/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508423
 2020-04-29 2020-08-04
 India hCoV-19/India/MW11/2020
 AT1- C241T C3037T C14408T G14414T G21422A A23403G G29868A

EPI_ISL_509061
 2020-04-29 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6762T C14408T C18086T A23403G G25563T A26528T A28492T

EPI_ISL_509062
 2020-04-29 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15957T A23403G G25302T G25563T

EPI_ISL_509436
 2020-04-29 2020-08-05
 United Kingdom hCoV-19/England/PRIN-254BC91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3170M C13730T C14408T A23403G G24368T G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509439
 2020-04-29 2020-08-05
 United Kingdom hCoV-19/England/PRIN-254BCBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2325T A2480G C2558T C5694T C7279T C7955Y G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509440
 2020-04-29 2020-08-05
 United Kingdom hCoV-19/England/PRIN-254BCA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G600T C3037T G10097A A12961G C14408T A23403G C23731T G27514T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509500
 2020-04-29 2020-08-05
 Australia hCoV-19/Australia/NSW2126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6622T C14408T A23403G G25088T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509694 MT844043
 2020-04-29 2020-08-05
 United States SARS-CoV-2/human/USA/UT-CDC-9757/2020
 C241T C3037T C4672T C5184T C14408T G17122T C18457T A19334G A23403G A25121T C26256T C29668T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_511508
 2020-04-29 2020-08-08
 Portugal hCoV-19/Portugal/PT0959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C12778T C14805T T17247C G26144T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512972
 2020-04-29 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH580/2020
 C241T -2883GTGTTGTGGCAGATGCTGTCGTGTTGTGGCAGATGCTGTCGTGTTGTGGCAGATGCTGTCGTGTTGTGGCAGATGCTGTCGTGTTGTGGCAGAGGCTGCTCGTGTTGTGGCAGATGCTGTCGTGTTGTGGCAGATGCTGTCGTGTTGTGGCAGATGCTGTAGTGTTGCATCAGAGGCTGCTCGTGTTGTGGCAGATGCTGTCGTGTTGTGGCAGATGCTGTCGTGTTGTGGCAGATGCTGTCGTGTTGTGGCAGATGCTGTC C3037T C14408T C18877T A23403G GGG28881AAC

EPI_ISL_512974
 2020-04-29 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH582/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512975
 2020-04-29 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH583/2020
 C241T C14408T A23403G GGG28881AAC

EPI_ISL_513657 MT877418
 2020-04-29 2020-08-12
 United States SARS-CoV-2/human/USA/UT-02848/2020
 C241T AAGTCATTT686- C3037T G8179T C14408T C16323T A23403G C26256T G29616T C29668T

EPI_ISL_513684 MT877379
 2020-04-29 2020-08-12
 United States SARS-CoV-2/human/USA/UT-02893/2020
 ATT1- C241T C3037T A3841T A6512C C14408T C18877T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_513686 MT877381
 2020-04-29 2020-08-12
 United States SARS-CoV-2/human/USA/UT-02895/2020
 ATTA1- C241T C3037T C14408T A23403G C26013T C26256T C29668T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_513901 MW036028
 2020-04-29 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCG1- C241T C1059T C3037T C5884T G6653A A6687R G10121A C14408T C19983T A23403G G25563T G28975T A29833W TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514616 MT892963
 2020-04-29 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G5017T C8782T G14350T C17747T A17858G C18060T A24694T T28144C C28310A G28812T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515396
 2020-04-29 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0128/2020
 ATG1605- C4763T C7423T C20270T A29683T

EPI_ISL_515397
 2020-04-29 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0129/2020
 ATT1- C241T C2675T C3037T A9741C C10277T C12459T C14408T C18877T A23403G G25563T C25585T G29260T

EPI_ISL_515398
 2020-04-29 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCT1- C2147T C3037T C12008T C14408T A23403G G23628T GGG28881AAC AAA29901-

EPI_ISL_515399
 2020-04-29 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0131/2020
 ATT1- C241T C379A C1059T C3037T C3096T C10956T C11102T CC14407TT A23403G G25563T C28253T

EPI_ISL_516665 MT913101
 2020-04-29 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0870/2020
 ATT1- C241T G1042A C1059T C3037T C6781T C14408T C14925T A20236G A23403G G25563T

EPI_ISL_520741
 2020-04-29 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920707982/2020
 C241T C3037T C6636T C14408T C18877T A23403G G25563T G26792T

EPI_ISL_522276
 2020-04-29 2020-08-25
 United States hCoV-19/USA/UT-02760/2020
 A1- C241T C1059T A1731C C3037T C4795T T11940C C13821A C14408T A23403G G25563T

EPI_ISL_523172
 2020-04-29 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5467T C11109T C14408T A20055G A23403G C25482T G25563T G28237T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523430
 2020-04-29 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C2141T C3037T C11109T C14408T A23403G G24047T C25482T G25563T G26101T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523431
 2020-04-29 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C2141T C3037T C11109T C14408T A23403G G24047T C25482T G25563T G26101T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523432
 2020-04-29 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C2925T C3037T A3625T C5986T C11109T C14408T T15096C A23403G G25563T C26936T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523495
 2020-04-29 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523997
 2020-04-29 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-10325V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C9163T C14408T T21644C A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524573
 2020-04-29 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28789T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524576
 2020-04-29 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE6F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C3037T C11650T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524587
 2020-04-29 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C5548T G10097A C11962T C13536T C14408T C21575T A23403G C23731T C25665T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524598
 2020-04-29 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE7D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C3593T C14408T G21600T A23403G G28086T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524599
 2020-04-29 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8016T C14408T A23403G C28789T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524603
 2020-04-29 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AEA50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4720T C6027T A6346G C9165T T9179C A10236G G11083T C14805T T17247C G25273C G26144T C28651T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524615
 2020-04-29 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE7B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T T1745C C3037T C4002T C9438T G10097A C11572T C13536T C14184T C14408T A18650C C21058T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524618
 2020-04-29 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE7FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T GA4207TC C6033T G11842T C14408T A23403G G23522R ATT27759- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524784
 2020-04-29 2020-08-28
 Brazil hCoV-19/Brazil/AP-IEC-165513/2020
 C241T C3037T C9430T C14220T C14408T A23403G T27299C C28603T GGG28881AAC G29027T T29148C

EPI_ISL_524791
 2020-04-29 2020-08-28
 Brazil hCoV-19/Brazil/MA-IEC-162466/2020
 C241T C1613T C3037T G11083T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_524793
 2020-04-29 2020-08-28
 Brazil hCoV-19/Brazil/AP-IEC-165669/2020
 C241T C3037T C14396T C14408T A23403G T27299C GGG28881AAC C28887T T29148C

EPI_ISL_526237
 2020-04-29 2020-09-01
 Hungary hCoV-19/Hungary/MH-5984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3426T C3686T T10567C C14408T A23403G G25074T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526473
 2020-04-29 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB3785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T G29543C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527358
 2020-04-29 2020-09-03
 United Kingdom hCoV-19/England/20186103704/2020
 ATTAAAGGTTT1- A2480G C2558T G11083T C13083T C14805T C25546T G26144T C29546T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527420
 2020-04-29 2020-09-02
 United States hCoV-19/USA/CO-CSU-D0590-2/2020
 C241T G256S C1059T C3037T G6463A GG7446AA G8602A G8853K G12268K AAAA12270WMWW A12275W A12286M T12289Y C12295M T13253C T13924W C14408T T20088Y T20561Y C23271Y T23296W A23403G T25468G G25563T A27001R C27005Y C27011M T27017K AG27020WK AA27023YY CA27026WW GCT27033SMY T27039K AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527425
 2020-04-29 2020-09-02
 United States hCoV-19/USA/CO-CSU-D0789-2/2020
 C241T C1059T C3037T C10448Y C14408T A23403G T25468G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527426
 2020-04-29 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1050-1/2020
 C241T C3037T C12741T C14408T A20268G A23403G G24173T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527461
 2020-04-29 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2575-1/2020
 C241T TGGTCATGTTATGGT508- C1059T C3037T C14408T A23403G T25468G G25563T G27758T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527487
 2020-04-29 2020-09-02
 United States hCoV-19/USA/CO-CSU-E2267/2020
 C241T C1059T C3037T C14408T G20616T A23403G A24129G G25552T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528409
 2020-04-29 2020-09-07
 United Kingdom hCoV-19/England/20186102804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A2480G C2558T C11074Y G11083T C13083T C14805T C21846A C25546T G26144T C29546T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_528411
 2020-04-29 2020-09-07
 United Kingdom hCoV-19/England/20186106504/2020
 ATTAAAGGTTTA1- C241T C1469T C3037T C7528T T7976C G10870T C14408T G21761K A23403G G28809A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_528697
 2020-04-29 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/31B/2020
 C241T C3037T A6466G C14408T A15596G TTA21991- A23403G C27911T G28396A

EPI_ISL_530081
 2020-04-29 2020-09-10
 Spain hCoV-19/Spain/MD-LP84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530203 MT997725
 2020-04-29 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T G14008A C14408T C16111T C16915T C17676T C22227T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_530204 MT997726
 2020-04-29 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1608/2020
 ATTA1- C241T C1059T C3037T T8164C C14408T G18433A A23403G G25563T C25626T A27821G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_530205 MT997727
 2020-04-29 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1609/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T A13182G C14408T A23403G G24368T G25563T C27855T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_537277
 2020-04-29 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B28A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C11289T C14408T C14925T A15489M A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537280
 2020-04-29 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B290F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C7772T G9489K C10002T G10097A C13536T C14408T A23403G C23731T T27384Y C27513T G27583K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541364
 2020-04-29 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2938/2020
 ATTAAAGGTTTATAC1- C16G C241T C3037T C6449T A9922G C14408T A23403G T27299C GGG28881AAC T29148C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_541365
 2020-04-29 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2950/2020
 ATTAAAGGTTTATACC1- C241T C959T C3037T C14408T A23403G G25720T T27299C GGG28881AAC T29148C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860TT

EPI_ISL_541366
 2020-04-29 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2951/2020
 T2C C241T C3037T T8803C C14408T C15656T C18570T C18981T G21608T A23403G T27299C G28347A GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_541367
 2020-04-29 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2966/2020
 C241T C3037T C3961T C14408T G16451K A23403G T27299C G28300T GGG28881AAC T29148C GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_542682
 2020-04-29 2020-09-23
 United States hCoV-19/USA/TX-HMH-1376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A15979G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542712
 2020-04-29 2020-09-23
 United States hCoV-19/USA/TX-HMH-1419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8730T C9050T G9595A C14408T A23403G G25563T C26625T C28720T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542715
 2020-04-29 2020-09-23
 United States hCoV-19/USA/TX-HMH-1424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542717
 2020-04-29 2020-09-23
 United States hCoV-19/USA/TX-HMH-1426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542893
 2020-04-29 2020-09-23
 United States hCoV-19/USA/TX-HMH-1895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14676T C16726T A23403G T24211C G25647T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542908
 2020-04-29 2020-09-23
 United States hCoV-19/USA/TX-HMH-1935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A A2969G C3177T C6040T C8782T C8950T G10523C G12478A T18736C C23277T C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545313
 2020-04-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-2446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G942A C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547477
 2020-04-29 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5029A C6318A G8179A C14408T A23403G G25563T C25782T C25904T C26461T G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559663
 2020-04-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-482293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20759Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559667
 2020-04-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-483344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C20930T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559669
 2020-04-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-48213C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559672
 2020-04-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-483292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C20930T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559675
 2020-04-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-4830B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559676
 2020-04-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-483238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12016C C14408T C16289T C16536T A23403G G25429T C26147T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559683
 2020-04-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-483283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3264T C14408T T16242C C18086T G19900T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_559695
 2020-04-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-481A50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T C14408T G21724T A23403G C24096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568961
 2020-04-29 2020-10-02
 France hCoV-19/France/IHU-0785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C9996T CT14408TC G16935T A23403G G25563T G29747T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568962
 2020-04-29 2020-10-02
 France hCoV-19/France/IHU-0786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T A9492C C9996T C14408T A21163G A23403G G25563T G29747T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569610
 2020-04-29 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0002/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C14408T C21034T A23403G G25563T C26625T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT460116
 2020-04-29 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1096/2020
 A1- C8782T C17747T A17858G C18060T A18600T C25603T T28144C

MT460140
 2020-04-29 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1120/2020
 C241T C3037T C14408T A23403G C24863T GGG28881AAC

MT477904
 2020-04-29 2020-05-16
 United States SARS-CoV-2/human/USA/UF-9/2020
 ATTAAAGGTTT1- C241T C1059T C1917T C3037T C14408T A23403G G25563T

MT598176
 2020-04-29 2020-06-11
 United States SARS-CoV-2/human/USA/SEARCH-0176-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6401T C14408T T17928C A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT627747
 2020-04-29 2020-06-16
 United States SARS-CoV-2/human/USA/WA-S622/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T G16489T T16617C A23403G G25563T C26204T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT810641
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1175-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810720
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1320-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8771G C14408T C14818T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810723
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1329-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C14818T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810724
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1332-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C14818T C16762T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810787
 2020-04-29 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1713-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810788
 2020-04-29 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1714-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T C11575T C14408T C17470T G19962T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810789
 2020-04-29 2020-07-29
 Mexico SARS-CoV-2/human/MEX/SEARCH-1715-TIJ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T C11575T C14408T G14653T G19072T A20268G A23403G C25721T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810986
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0366-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810990
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0370-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810991
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0371-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811007
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0398-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T A12875G C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811221
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0531-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811226
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0538-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811240
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0562-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T G28986T C29546T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811297
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0659-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T G1820A T2602C C3037T G3482A G4657A C7528T C14408T G21578T A23403G C25047A G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811298
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0660-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T T3282C C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811307
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0675-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T G21578T A23403G C25482T G25563T A27086G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811308
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0678-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811343
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0732-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4321T C5672T C12854T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811412
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0902-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C6813T C14408T A20268G A23403G T27222C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811414
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0905-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C14408T G21578T A23403G C25482T G25563T A27086G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811421
 2020-04-29 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0921-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G C21621T A23403G G23793T G25785T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873058
 2020-04-29 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01169/2020
 AT1- C241T A2104G C3037T C14408T T21656C A21993T A23403G G25244C C28603T G28899T

MT873092
 2020-04-29 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01153/2020
 ATTAA1- C241T C1059T C3037T A8101T C14408T A23403G G25563T

MT873209
 2020-04-29 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01182/2020
 ATTAAA1- C241T C1059T C3037T T9429C C11916T C14408T C18998T A20553G G21724C A23403G G25563T G29540A

MT873257
 2020-04-29 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01151/2020
 AT1- C241T C3037T C14408T C22120T A23403G GGG28881AAC

MT873283
 2020-04-29 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01183/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T

MT873385
 2020-04-29 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01152/2020
 ATTAA1- C241T C1059T C3037T A8101T C14408T A23403G G25563T

MT873430
 2020-04-29 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01157/2020
 C241T C2106T C3037T G11083T C14408T C15654T A23403G C28603T G28899T A29806T

MT873461
 2020-04-29 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01161/2020
 ATTAAA1- C241T C1059T C3037T C4999T T11227C C14408T A15847G C16260T A23403G G25563T C28821A

MW001251
 2020-04-29 2020-09-14
 United States SARS-CoV-2/human/USA/237-nasopharyngeal/2020
 C241T C1059T C3037T C8247T C14408T T15326C C16260T A16438G C21658T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAA29883-

MW001253
 2020-04-29 2020-09-14
 United States SARS-CoV-2/human/USA/237-oropharyngeal/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW001254
 2020-04-29 2020-09-14
 United States SARS-CoV-2/human/USA/238-nasopharyngeal/2020
 C241T C1059T C3037T C14408T T15326C C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAA29883-

MW001255
 2020-04-29 2020-09-14
 United States SARS-CoV-2/human/USA/239-nasopharyngeal/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAA29883-

MW001256
 2020-04-29 2020-09-14
 United States SARS-CoV-2/human/USA/239-oropharyngeal/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAA29883-

MW001259
 2020-04-29 2020-09-14
 United States SARS-CoV-2/human/USA/242-nasopharyngeal/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MW001261
 2020-04-29 2020-09-14
 United States SARS-CoV-2/human/USA/242-oropharyngeal/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_439327
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3796/2020
 C106T C241T C274T C3037T C14408T C17528T A20268G A23403G C25771T C28854T

EPI_ISL_439335
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3837/2020
 C7423T C7869T G19658A

EPI_ISL_439336
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3842/2020
 C241T C3037T A8032G C14408T C18788T T19839C A23403G A24862G GGG28881AAC

EPI_ISL_439341
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3857/2020
 C241T C3037T G6123A C7869T A8891G C13051T C14408T A23403G G27788T GGG28881AAC

EPI_ISL_439342
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3859/2020
 C241T T2987C C3037T A3215G C14408T C14724T G15438T A20268G T20799C A23403G

EPI_ISL_439343
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3862/2020
 C241T C3037T G10097A C14408T A23403G C23731T C25160T G26116A G28580T GGG28881AAC

EPI_ISL_439344
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3864/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_439345
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3865/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_439346
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3868/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G

EPI_ISL_439347
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3869/2020
 C241T C3037T C14408T A20268G A23403G GG26466TC C28854T

EPI_ISL_439348
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3870/2020
 C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_439349
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3871/2020
 C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_439352
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3879/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_439668
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3943/2020
 C241T A2215G C3037T A10874G C12823T C14408T A23403G G25429T G25440A T26677C

EPI_ISL_441880
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/England/NOTT-1109A7/2020
 G199T C241T G2468A A2526C C3037T C10440T C14408T A23403G T25316C GGG28881AAC

EPI_ISL_441881
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/England/NOTT-1109B6/2020
 C241T A385G C2706T C3037T C14408T C16457T A23403G GGG28881AAC

EPI_ISL_441882
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/England/NOTT-1109C5/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_441885
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/England/NOTT-110A0E/2020
 C241T C3037T G10097A C14408T A23403G C23731T G26746T G28077T G28580T GGG28881AAC

EPI_ISL_441890
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/England/NOTT-110A77/2020
 C241T C3037T C4002T G10097A G12514T C13536T C14408T A23403G A23524C C23731T GGG28881AAC

EPI_ISL_441891
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/England/NOTT-110A86/2020
 C241T C3037T G7143A C10078T G11083T C14408T A23403G G27281T GGG28881AAC C29171T C29284T G29405A

EPI_ISL_441892
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/England/NOTT-110A95/2020
 C241T A2641G C3037T C3622T C14408T A23403G C25844T C28087T GGG28881AAC

EPI_ISL_441894
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/England/NOTT-110AB3/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_441895
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/England/NOTT-110AC2/2020
 C241T C1059T C3037T A12271G C14408T A23403G G23621A G25217T G25563T A29756T

EPI_ISL_441896
 2020-04-30 2020-05-12
 United Kingdom hCoV-19/England/NOTT-110AD1/2020
 C241T C3037T C4002T G10097A G12514T C13536T C14408T A23403G A23524C C23731T GGG28881AAC

EPI_ISL_444065
 2020-04-30 2020-05-13
 United States hCoV-19/USA/CA-CZB-1107/2020
 A1- C8782T C10776T C17747T A17858G C18060T C18452T T20315A T28144C G29560R

EPI_ISL_444066
 2020-04-30 2020-05-13
 United States hCoV-19/USA/CA-CZB-1108/2020
 AT1- C241T C3037T C14408T C23220T A23403G GGG28881AAC

EPI_ISL_444067
 2020-04-30 2020-05-13
 United States hCoV-19/USA/CA-CZB-1109/2020
 ATTAAA1- C241T C3037T C5467T C8389T G8785A C14408T A23403G C25066Y G25563T C26684T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_444068
 2020-04-30 2020-05-13
 United States hCoV-19/USA/CA-CZB-1110/2020
 ATTA1- G17079T C18060T G25177T G25775T T27843C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_444070
 2020-04-30 2020-05-13
 United States hCoV-19/USA/CA-CZB-1112/2020
 AT1- C241T C1059T G2764T C3037T C4069T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_444071
 2020-04-30 2020-05-13
 United States hCoV-19/USA/CA-CZB-1113/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C G29540A

EPI_ISL_444074
 2020-04-30 2020-05-13
 United States hCoV-19/USA/CA-CZB-1116/2020
 C241T C1059T G2764T C3037T C4897T C14408T A23403G G25563T C27294T

EPI_ISL_444076
 2020-04-30 2020-05-13
 United States hCoV-19/USA/CA-CZB-1118/2020
 ATTAAAGGTT1- C241T C3037T T13572C C14408T A23403G C24863T GGG28881AAC

EPI_ISL_444459 MT467243
 2020-04-30 2020-05-13
 India SARS-CoV-2/human/IND/GBRC28/2020
 C241T C3037T C14408T C15654T G16078A C18877T C22444T G23311T A23403G C24502T G25563T C26735T C28854T

EPI_ISL_444460 MT467244
 2020-04-30 2020-05-13
 India SARS-CoV-2/human/IND/GBRC29/2020
 C241T C3037T C14408T A14673G A23403G

EPI_ISL_444480 MT467255
 2020-04-30 2020-05-13
 India SARS-CoV-2/human/IND/GBRC49/2020
 C241T C3037T C14408T C17004T A18134G C18877T A23403G G25563T C26735T C27603T A28390G C28948T

EPI_ISL_444481 MT467257
 2020-04-30 2020-05-13
 India SARS-CoV-2/human/IND/GBRC50/2020
 C241T C3037T C14408T A23403G

EPI_ISL_445220
 2020-04-30 2020-05-15
 ‎Romania hCoV-19/Romania/278406/2020
 C241T C3037T G6349A C11674T C14408T A15864G C19145T T19839C A23403G GGG28881AAC

EPI_ISL_445243
 2020-04-30 2020-05-15
 Romania hCoV-19/Romania/279067/2020
 C241T G2659T C3037T C8290T C9565T C14408T C18877T C23124G A23403G G25440T C25469T G25563T C27741T C28289T

EPI_ISL_447054
 2020-04-30 2020-05-16
 Romania hCoV-19/Romania/279068/2020
 C241T G2659T C3037T C8290T C9565T C14408T C18877T C23124G A23403G G25440T C25469T G25563T C27741T C28289T

EPI_ISL_447960
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD06E/2020
 C241T A1620G C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC

EPI_ISL_447970
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD14D/2020
 C241T C3037T C6926T C14408T T15336C C19170T G19509A A23403G T25272C C27145T GGG28881AAC

EPI_ISL_447971
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD16B/2020
 C241T C3037T G8612T C14408T A23403G GGG28881AAC G29705T

EPI_ISL_447975
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD1A7/2020
 C241T C3037T C10116T C14408T A14737G C19017T A20055G A23403G GGG28881AAC T29377A CGAGGCCACGCGGAGTACGAT29733-

EPI_ISL_447979
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD20E/2020
 C241T C3037T A5829G A11730G C14408T C18877T C21614T A23403G G24197T G25563T T25732G C26735T

EPI_ISL_447981
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD24A/2020
 C241T C2416T C3037T C4755T A11430G C14408T A21801C A23403G G25563T

EPI_ISL_447987
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD2C2/2020
 C241T C3037T C14408T A23403G C25350T C28866T

EPI_ISL_447988
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD2D1/2020
 C241T C3037T C6606T C14408T A20268G A23403G C28854T

EPI_ISL_447990
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD602/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448003
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD769/2020
 C241T C3037T C9474T C10116T C14408T A14737G C19017T A23403G GGG28881AAC

EPI_ISL_448008
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD7B4/2020
 C241T C3037T T12016C C14408T C16289T C16536T A23403G G25429T

EPI_ISL_448019
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD8A2/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448350
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9AD2/2020
 ATTAAAGGTTTATACCT1- C1314T T4171A A9634T G11083T C14805T T17247C C25276T G26144T

EPI_ISL_448351
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9B1B/2020
 ATTA1- C186T C241T C3037T C14408T C17541T A23403G A24232G G25429T

EPI_ISL_448352
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9B48/2020
 A1- G11083T C12708Y C14805T T17247C G26144T

EPI_ISL_448355
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9C09/2020
 C241T C1684T C3037T C6593T C12915T C14408T G14829T A20268G G21255T A23403G G29744A

EPI_ISL_448357
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9C54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C829T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_448358
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9C63/2020
 ATTAAAG1- C241T C3037T C14408T A23403G A24232G G25429T

EPI_ISL_448359
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9C72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G A24232G G25429T

EPI_ISL_448360
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9CEB/2020
 ATTA1- C241T C3037T A10152C C14408T C14898T G21724T A23403G C28754T GGG28881AAC

EPI_ISL_448361
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9D06/2020
 ATTAAA1- C4755T G11083T C14805T T17247C G26144T

EPI_ISL_448389
 2020-04-30 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110AFF/2020
 C241T C1862T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_451201
 2020-04-30 2020-05-23
 Uganda hCoV-19/Uganda/UG019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T G4656A C14408T A23403G G24926T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_451225
 2020-04-30 2020-05-24
 United States hCoV-19/USA/LA-EVTL064/2020
 C241T C1059T C3037T G7756T C10188T C14408T G16377C A20232G A23403G T24982C G25563T ACT27574- C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451230
 2020-04-30 2020-05-24
 United States hCoV-19/USA/LA-EVTL069/2020
 C241T C1059T C1943T C3037T T6226C C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451652
 2020-04-30 2020-05-25
 Poland hCoV-19/Poland/Pom11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3587T G7936A C11572T C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_452281
 2020-04-30 2020-05-27
 United States hCoV-19/USA/MI-MDHHS-SC20407/2020
 C207T C241T C1059T C3037T C4582T A5011M C14408T A23403G G25563T T25580C C28893T C29546Y

EPI_ISL_454220
 2020-04-30 2020-05-28
 Portugal hCoV-19/Portugal/PT0496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_454624 MT533221
 2020-04-30 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1171/2020
 ATTAAAGGTTT1- C241T C1059T C3037T A12719R C14408T A23403G G25563T C26456T G29557T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_454625 MT533222
 2020-04-30 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1174/2020
 A38R C241T C3037T C14408T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_454626 MT533223
 2020-04-30 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1175/2020
 ATTAAAGGT1- G17079K T24379Y G25177T G25775T G26550R T27843C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_454628 MT533225
 2020-04-30 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G C23430Y C25546A G25563T C26456T T27792W A28254R G29557T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454629 MT533226
 2020-04-30 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1179/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T C26456T GAT27382SWY G29557T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_454630 MT533227
 2020-04-30 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10623Y C14408T A23403G C25546A G25563T C26456T G29557T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_455631
 2020-04-30 2020-06-01
 South Africa hCoV-19/SouthAfrica/KRISP-101/2020
 C241T C3037T T8409C C14408T A23403G

EPI_ISL_455632
 2020-04-30 2020-06-01
 South Africa hCoV-19/SouthAfrica/KRISP-102/2020
 C241T C3037T C14408T A23403G C26004T GGG28881AAC

EPI_ISL_455655
 2020-04-30 2020-06-01
 India hCoV-19/India/S25/2020
 C241T C337T C3037T C14408T C22530T A23403G C29197T

EPI_ISL_455656
 2020-04-30 2020-06-01
 India hCoV-19/India/S27/2020
 G1820A C6310A C6312A G11083T C13730T C18576T C19524T C23929T C28311T T29524C

EPI_ISL_455657
 2020-04-30 2020-06-01
 India hCoV-19/India/S28/2020
 C241T C3037T G4559T C14408T G15451A A23403G C29108T

EPI_ISL_455658
 2020-04-30 2020-06-01
 India hCoV-19/India/S29/2020
 C1191T G8102T C8247T C8782T G18380T G22468T T28144C G28878A G29348T G29742A

EPI_ISL_455678
 2020-04-30 2020-06-01
 India hCoV-19/India/S61/2020
 C241T G1589A A2368T C3037T C4893T C6541T C13730T C14408T A23403G

EPI_ISL_456778
 2020-04-30 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26615T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_457374 LR814253
 2020-04-30 2020-06-02
 United Kingdom NORW-EAD80
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G GGG28881AAC C29520T

EPI_ISL_457380 LR815564
 2020-04-30 2020-06-02
 United Kingdom NORW-EAE02
 C241T C3037T T4579A C5175T C14408T A23403G C25521T G28514T

EPI_ISL_457381 LR815578
 2020-04-30 2020-06-02
 United Kingdom NORW-EAE11
 ATTA1- C241T C3037T C8367T C11455T C14408T C17304T C19524T A23403G G25302T G25455T GGG28881AAC

EPI_ISL_457389 LR821966
 2020-04-30 2020-06-02
 United Kingdom NORW-EAEA8
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3255R C12915T C14408T A20268G G21255T A23403G

EPI_ISL_457390 LR821882
 2020-04-30 2020-06-02
 United Kingdom NORW-EAEB7
 C241T C3037T C14408T G17721T A23403G C25728T GGG28881AAC

EPI_ISL_457391 LR813998
 2020-04-30 2020-06-02
 United Kingdom NORW-EAED5
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C2940T C3037T C13862Y C14408T C19263Y A23403G

EPI_ISL_457394 LR822004
 2020-04-30 2020-06-02
 United Kingdom NORW-EAF3C
 ATTAAAGGTTTATACCT1- C241T A2775R C2940Y C3037T C10626Y C14408T C21648Y A23403G G28077K GGG28881RRS

EPI_ISL_457395 LR814110
 2020-04-30 2020-06-02
 United Kingdom NORW-EAF4B
 ATTA1- T1209C ATG1605- C8917T C16349T C17898T C27128T

EPI_ISL_457396 LR814148
 2020-04-30 2020-06-02
 United Kingdom NORW-EAF5A
 ATTAA1- C241T C3037T A11519G C14408T A23403G G23868T G25429T GTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTC27703-

EPI_ISL_457397 LR821988
 2020-04-30 2020-06-02
 United Kingdom NORW-EAF69
 C1314T G11083T C14805T T17247C G26144T T27451A C29171T

EPI_ISL_457405 LR821993
 2020-04-30 2020-06-02
 United Kingdom NORW-EB00B
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T A10323R C14408T A23403G GGG28881AAC C29520T

EPI_ISL_457406 LR821945
 2020-04-30 2020-06-02
 United Kingdom NORW-EB01A
 ATTAAAGGTTTATACC1- G1440A G2891A C4668T C11653T A20598G C28708T

EPI_ISL_457407 LR814127
 2020-04-30 2020-06-02
 United Kingdom NORW-EB029
 ATTA1- C241T C3037T C14408T G17325T A23403G AG28877TC GGG28881AAC

EPI_ISL_457425 LR814248
 2020-04-30 2020-06-02
 United Kingdom NORW-EB399
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G G24933T C25728T GGG28881AAC

EPI_ISL_457599
 2020-04-30 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C35DD/2020
 C241T C3037T G10097A C11750T C13381T C14408T A23403G C23731T A23992T C25350T G28580T GGG28881AAC

EPI_ISL_457655
 2020-04-30 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CC817/2020
 C241T C1190T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_460854
 2020-04-30 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T C20946T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460938
 2020-04-30 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T C10408T G11596T C14408T T16891C C18555T A23403G A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461074
 2020-04-30 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7765T C14408T G15439A A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461218
 2020-04-30 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461240
 2020-04-30 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T G3856A C14408T C16017T T16515C CTTTACTTG22281- A23403G A27083C T27413A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461300
 2020-04-30 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G G19726T A23403G G25563T G25565A T25623C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461312
 2020-04-30 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C13011T C14408T G20568A A23403G A26530G G27877T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461313
 2020-04-30 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T C9924T G11596T C13011T C14408T G20568A A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461850
 2020-04-30 2020-06-06
 United Kingdom hCoV-19/England/NORW-E9CBE/2020
 A1- C241T C3037T G4962T C14408T C21736T A23403G C25728T GGG28881AAC

EPI_ISL_462009
 2020-04-30 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C31CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6526G G10097A C11750T C13381T C14408T A23403G C23731T A23992T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462036
 2020-04-30 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C83FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21784C A22004G A22253T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462069
 2020-04-30 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CF39B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6526G G10097A C11750T C13381T C14408T A23403G C23731T A23992T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462361
 2020-04-30 2020-06-08
 Singapore hCoV-19/Singapore/243/2020
 T961Y C6310A C6312A G11083T G11893A C13730T C15960Y C19524T C23929T G25290T C28311T AAAAAAAAAAAA29892-

EPI_ISL_462406
 2020-04-30 2020-06-08
 Singapore hCoV-19/Singapore/288/2020
 T111Y C6310A C6312A G11083T C13730T G16089T C19524T C23929T G25906T C28311T C29509T AAAAAAAAAAAA29892-

EPI_ISL_462411
 2020-04-30 2020-06-08
 Singapore hCoV-19/Singapore/293/2020
 A38T C6310A C6312A G11083T C13730T C19524T C23185T C23929T G25302T C27629Y C28311T AAAAAAAAAAAA29892-

EPI_ISL_462690 MT585052
 2020-04-30 2020-06-08
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20608/2020
 C241T C1059T C3037T C14408T A23403G G25563T C26447Y

EPI_ISL_462692 MT585059
 2020-04-30 2020-06-08
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20610/2020
 C241T C1059T C3037T G4476A C8344T C14408T C14768T G21123T A23403G G25563T G29810T AAAAAAAA29896-

EPI_ISL_462696 MT585067
 2020-04-30 2020-06-08
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20614/2020
 C241T C1059T C3037T C8344T C14408T C14768T G21123T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_462698 MT585050
 2020-04-30 2020-06-08
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20616/2020
 C241T C1059T C3037T A5011M G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_462699 MT585064
 2020-04-30 2020-06-08
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20617/2020
 C241T C1059T C3037T C8344T G10396K C14408T C14768T G21123T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_462700 MT585071
 2020-04-30 2020-06-08
 United States SARS-CoV-2/human/USA/MI-MDHHS-SC20618/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29744T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_462845
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C36T C241T C1059T C1812T T2187G A2466G C3037T C6651T C10319T C13665T C14408T C21658T A23403G G25563T C27964T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_462846
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1001/2020
 ATTAAAGGTTTATACC1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_462847
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_462848
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_462849
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_462850
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T C20428T A23403G G25563T C26645T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_462851
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_462852
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_462853
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T T3322C C10319T C13665T C14408T A23403G G25563T C27964T G28899T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_462854
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G8264T C10319T C13665T C14408T T15551C C23034Y A23403G G25563T C26645T C27964T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_462855
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T G1806A C1812T C3037T C10319T C10702T C13665T C14408T A23403G G25563T C27964T C29530T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_462856
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_462857
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_462858
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_462859
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_462860
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1015/2020
 ATTA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_462861
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5512T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_462862
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T G17252A G21372T A23403G G25563T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_462864
 2020-04-30 2020-06-08
 United States hCoV-19/USA/MN-MDH-1019/2020
 ATTA1- C241T C1059T C1812T C3037T C10319T A12808G C13665T C14408T A19283C A23403G G25563T C26645T C27145T C27964T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_463100 MT609564
 2020-04-30 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0297/2020
 AT1- C241T T1918C C3037T C6402T C8320T C12171T C14408T C18877T A23403G G25563T

EPI_ISL_463101 MT609565
 2020-04-30 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0298/2020
 C241T T1918C C3037T C6402T C8320T C12171T C14408T C18877T A23403G G25563T

EPI_ISL_463124 MT609587
 2020-04-30 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0363/2020
 ATTA1- C28T C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C C29077T G29540A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_463126 MT609589
 2020-04-30 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0366/2020
 ATTAAAGGTTTATACC1- C241T A1935G C3037T C14408T A23403G C25708T GGG28881AAC C29870A

EPI_ISL_463456 MT642321
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S966/2020
 ATT1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463497 MT642278
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1007/2020
 AT1- C8782T C17010T C17747T A17858G C17934T C18060T C20480T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463499 MT642125
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1009/2020
 ATTAAAG1- G354A C2070T C8782T C17747T A17858G C18060T C19524T T19839C G24075A A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463503 MT642154
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1013/2020
 ATT1- G354A C2070T C8782T C17747T A17858G C18060T C19524T T19839C G24075A A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463504 MT642115
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1014/2020
 ATTAAAGGTTTATACC1- G354A C2070T C8782T C17747T A17858G C18060T C19524T T19839C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463505 MT642271
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1015/2020
 ATTAAAGGTTTAT1- G1401A C8782T C17747T A17858G C18060T A19308G C27584A A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463507 MT642218
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1017/2020
 ATTAAAGGTT1- C241T A2161G C3037T C4993T C14408T A15593G C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463508 MT642295
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1018/2020
 AT1- C8782T G15406A C17010T C17747T A17858G C18060T G22487C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463509 MT642121
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1019/2020
 ATTAAAGGTTTAT1- C3311A C8782T C17010T C17747T A17858G C17934T C18060T G25563T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463511 MT642320
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1021/2020
 ATTAAAGGTTTA1- C788T G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463516
 2020-04-30 2020-06-10
 United States hCoV-19/USA/WA-S1026/2020
 ATTAAAGGTTTAT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463540 MT642107
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1050/2020
 AT1- C241T C3037T A5538T C14408T G16813A C18511T A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463541 MT642349
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1051/2020
 ATTAAAGG1- C241T C3037T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463544 MT642372
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1054/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463545 MT642226
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1055/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C4084T C14408T A20262G G22381T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463546 MT642369
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1056/2020
 ATTAAAGGTTT1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463547 MT642207
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1057/2020
 AT1- C241T C3037T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463550 MT642202
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1060/2020
 ATTAAAGGTT1- C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463551 MT642087
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1061/2020
 A1- C241T G862T C1059T C3037T C3096T C5031T C6040T T8356C C14408T A23403G G25563T C26499G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463553 MT642357
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1063/2020
 ATT1- C8782T G15406A C17010T G17058A C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463554 MT642233
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1064/2020
 ATTAAAGGTTTAT1- C241T C3037T C6445T C14408T G16813A G20944T A23403G GGG28881AAC C29353T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463559 MT642124
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1069/2020
 ATTAAAGGTTTAT1- C3037T C4809T C14408T T19839C A23403G A27373T T28318C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463560 MT642204
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1070/2020
 ATT1- C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463561 MT642269
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1071/2020
 ATTAAAGGTTTA1- C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463562 MT642340
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1072/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463563 MT642253
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1073/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463564 MT642160
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1074/2020
 ATTAAAGGTT1- C241T A2161G C3037T C14408T C16376T C18877T T20982C A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463565 MT642190
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1075/2020
 ATTAAAG1- C241T A2161G C3037T C7732T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463566 MT642331
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1076/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463568 MT642133
 2020-04-30 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1078/2020
 ATTAAAGGTTTAT1- C241T G862T C1059T C3037T C3096T C6040T C14408T A23403G G25563T C26499G G27261T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_465491
 2020-04-30 2020-06-11
 United Kingdom hCoV-19/England/20186134604/2020
 C241T T1143Y C3037T A10948G C14408T A23403G T26712A C27542T GGG28881AAC

EPI_ISL_465494
 2020-04-30 2020-06-11
 United Kingdom hCoV-19/England/20188018004/2020
 C241T C3037T A5855G C14408T C18110T C18115T A19338R A23403G GGG28881AAC

EPI_ISL_465498
 2020-04-30 2020-06-11
 United Kingdom hCoV-19/England/20188020204/2020
 C241T C3037T A5855G C14408T C16887T C18110T C18115T A23403G A27440G GGG28881AAC

EPI_ISL_465505
 2020-04-30 2020-06-11
 United Kingdom hCoV-19/England/20188035504/2020
 C241T C3037T G8179T G12545R C14408T A23403G C25350Y

EPI_ISL_465508
 2020-04-30 2020-06-11
 United Kingdom hCoV-19/England/20188051804/2020
 C241T C1915T C3037T C5884T C7573T C14408T C21658T A23403G T23641A GGG28881AAC G29179T

EPI_ISL_465590
 2020-04-30 2020-06-11
 United Kingdom hCoV-19/England/20190062001/2020
 C241T C3037T C6681T C14408T G15438T A20268G A23403G G26217R

EPI_ISL_465712
 2020-04-30 2020-06-11
 United Kingdom hCoV-19/England/20186133904/2020
 C241T C3037T A10948G C14408T A23403G T26712A C27542T GGG28881AAC

EPI_ISL_465713
 2020-04-30 2020-06-11
 United Kingdom hCoV-19/England/20186134404/2020
 C241T C3037T T7357Y C8917T A10948G C14408T A23403G C25642T G25690A C27542T GGG28881AAC

EPI_ISL_465714
 2020-04-30 2020-06-11
 United Kingdom hCoV-19/England/20188019604/2020
 C241T C3037T A5855G C14408T C18110T C18115T A23403G A27440G GGG28881AAC A29886R

EPI_ISL_465717
 2020-04-30 2020-06-11
 United Kingdom hCoV-19/England/20188028704/2020
 C241Y A2480R C3037Y C3317Y C5822Y A7032R T10992Y C11074Y G11083K C13501Y C14408Y C14805Y C19170Y G19509R A23403R C23997M A24679R G26144K A27209R GGG28881RRS G29440K

EPI_ISL_465718
 2020-04-30 2020-06-11
 United Kingdom hCoV-19/England/20188033304/2020
 C241T C1170T C2488T C3037T T7582C C11897Y C13671T C14408T A23403G GGG28881AAC

EPI_ISL_466901
 2020-04-30 2020-06-12
 Germany hCoV-19/Germany/BAV-MVP0246/2020
 C241T C313T C3037T C5654T C13059T C14408T A23403G GGG28881AAC

EPI_ISL_466902
 2020-04-30 2020-06-12
 Germany hCoV-19/Germany/BAV-MVP0247/2020
 C241T C3037T C14408T A23403G T27360C

EPI_ISL_466904
 2020-04-30 2020-06-12
 Germany hCoV-19/Germany/BAV-MVP0250/2020
 C241T C1593T C3037T T7386C C14408T A23403G C23987T C24374T

EPI_ISL_467380
 2020-04-30 2020-06-13
 United States hCoV-19/USA/NY-NYUMC887/2020
 C241T C1059T C3037T C14408T A23403G T25535C G25563T C29364T

EPI_ISL_467387
 2020-04-30 2020-06-13
 United States hCoV-19/USA/NY-NYUMC894/2020
 T490A G1478A C3177T A6505T C8782T T18736C C24034T T26729C C27635T A27917C G28077C T28144C A29567C A29700G G29745T

EPI_ISL_467399
 2020-04-30 2020-06-13
 United States hCoV-19/USA/NY-NYUMC906/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468284 LR824200 LR860865
 2020-04-30 2020-06-16
 Switzerland 120221
 C241T C2434Y C2773Y C3037T T3802Y C14408T C18348Y T19299Y A19334R A20268R T22369Y C22383Y A23403G G26458K C29085Y

EPI_ISL_468286 LR824214 LR860853
 2020-04-30 2020-06-16
 Switzerland 120224
 C241T C635Y T658Y T1936Y C3037T A5141R T5201W C5211Y G5992K G6167R T7054Y G9233K C11902Y C12012Y C12651Y C13643Y G14272K T14308K C14408T C15324Y G15965K C17502Y C20313Y G20398R C20402Y C20405S G20615K G20855K C20956Y T21206Y T21333W C22730Y A23403G A24862G C25936Y G26980R T27534W C27619Y C27644Y C27657Y C28629T G28881K G28939K A29352R C29509Y A29866W

EPI_ISL_468477 MT628204
 2020-04-30 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1532/2020
 C241T C1059T C2976T C3037T C4795T C11916T C14408T G15086A C18998T A23403G G25563T G29540A

EPI_ISL_468478 MT628205
 2020-04-30 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1533/2020
 AT1- C222T C241T C1288T C3037T C11575T C14408T T19896C A20268G A23403G C28854T

EPI_ISL_468747
 2020-04-30 2020-06-17
 Chile hCoV-19/Chile/Santiago-05230/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_468748
 2020-04-30 2020-06-17
 Chile hCoV-19/Chile/Santiago-05207/2020
 C241T C3037T TC4846GT C14408T G14874T C18029T A23403G C25344T GGG28881AAC

EPI_ISL_468750
 2020-04-30 2020-06-17
 Chile hCoV-19/Chile/Santiago-05426/2020
 C241T C3037T C14408T A23403G A25457C GGG28881AAC

EPI_ISL_468757
 2020-04-30 2020-06-17
 Chile hCoV-19/Chile/Copiapo-00015/2020
 C241T C3037T G9479T C14408T A23403G GGG28881AAC

EPI_ISL_469846
 2020-04-30 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-101736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G T23728C C23731T GGG28881AAC G29372A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469861
 2020-04-30 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-101244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9967T A10323G C14408T G21204T A23403G C25350Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469875
 2020-04-30 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-10145D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GTTCTA28090- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469888
 2020-04-30 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-100C74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A23902T T24565A GGG28881AAC G28919C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471163
 2020-04-30 2020-06-19
 Gambia hCoV-19/Gambia/0536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471647
 2020-04-30 2020-06-22
 Brazil hCoV-19/Brazil/SP-526/2020
 T25G C241T C1376T C3037T C12053T C14408T A23403G G25088T GGG28881AAC G29861A AAAAAAAAAAAAA29891-

EPI_ISL_471648
 2020-04-30 2020-06-22
 Brazil hCoV-19/Brazil/SP-527/2020
 C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC C29632T AAAAAAAAAAAAA29891-

EPI_ISL_471767
 2020-04-30 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20746/2020
 C241T C1059T C2939T C3037T C14408T A23403G G25563T C26985T

EPI_ISL_471768
 2020-04-30 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20747/2020
 C241T C1059T C3037T A5011M C6027Y C9165T G11083T C14408T A23403G G25563T

EPI_ISL_471769
 2020-04-30 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20748/2020
 C241T C1059T C2939T C3037T C14408T A23403G G25563T

EPI_ISL_471795
 2020-04-30 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20774/2020
 C241T T693G C1059T C3037T A8012G C14408T A19352G A23403G G25563T A29865R AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_472426
 2020-04-30 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111F3B/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_473294
 2020-04-30 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16342C/2020
 AT1- C241T C3037T C6026T G11801A C14408T T19839C A23403G G25552T AG28877TC GGG28881AAC

EPI_ISL_473949
 2020-04-30 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6383/2020
 C241T C2113T C3037T C7765T C13968T C14189T C14408T C17690T C18877T A23403G T24923C G25563T

EPI_ISL_473978
 2020-04-30 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163680/2020
 AT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC T29293C

EPI_ISL_474026
 2020-04-30 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1639F0/2020
 ATTAA1- C241T C3037T A3260G C14408T C15324T C18904Y G21867T A23403G G25606T A26513G

EPI_ISL_474059
 2020-04-30 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163C33/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T T4186C G11801A C14408T C16466Y T19839C A23403G G25552T C27641T GGG28881AAC A29526T

EPI_ISL_474061
 2020-04-30 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163C51/2020
 ATTAAA1- C241T C3037T C3096Y G10097A G11083T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_474067
 2020-04-30 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163CBB/2020
 A1- G1440A C1911T G2891A C19524T C25669T G28851T C29200T

EPI_ISL_474175
 2020-04-30 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16441C/2020
 C241T C3037T C6636T G11083T C14408T A23403G G25429T C28866T

EPI_ISL_474205
 2020-04-30 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164616/2020
 C241T C3037T T4186C G11801A C14408T T19839C A23403G G25552T C27641T GGG28881AAC A29526T

EPI_ISL_474215
 2020-04-30 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1646BC/2020
 A1- C241T C3037T C6636T G11083T C14408T A23403G G25429T C28866T G29540T

EPI_ISL_475267
 2020-04-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0C4F/2020
 C241T C2881T C3037T C4788T C14408T G19162T A23403G C25350T

EPI_ISL_475268
 2020-04-30 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0C7C/2020
 C241T C3037T C14408T C16289T T17568C A23403G G25429T

EPI_ISL_475370
 2020-04-30 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C3986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C4002T G10097A C13536T G14218T C14408T A23403G C23731T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475443
 2020-04-30 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CC1C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475511
 2020-04-30 2020-06-23
 Sweden hCoV-19/Sweden/20-14131/2020
 C241T C3037T C4795T T6945C C9474T G13348T C14195A C14408T A23403G T24063C C25710T G27225A A27763G G29702T

EPI_ISL_475512
 2020-04-30 2020-06-23
 Sweden hCoV-19/Sweden/20-14137/2020
 C241T C1059T T2837C C3037T C14408T A23403G G24368T G25563T A28065G C29836T

EPI_ISL_475513
 2020-04-30 2020-06-23
 Sweden hCoV-19/Sweden/20-14178/2020
 C241T G521T C3037T A14175G C14408T A23403G A23974T GGG28881AAC

EPI_ISL_476107 LR824506 LR861087
 2020-04-30 2020-06-25
 Switzerland 140058
 C241T C2434T C3037T C14408T A19298W C19343Y A20268G A23403G

EPI_ISL_476108 LR824507 LR861076
 2020-04-30 2020-06-25
 Switzerland 140059
 C241T C313T C3037T A5257W C14408T C15324T C18060Y A19298W T19347Y A19548R A19899G C22347S A23403G G27670T C29296Y

EPI_ISL_476110 LR824511 LR861089
 2020-04-30 2020-06-25
 Switzerland 140062
 C241T C635Y G1228A C3037T C14408T C15324T C15656Y A23403G G23426K C26873Y C28121Y C28253Y C28854T C29719Y

EPI_ISL_476113 LR824519 LR861080
 2020-04-30 2020-06-25
 Switzerland 140065
 T175K G210K C241T C1628Y C3037T G3056R G3135S C4891Y G5210S A5257W C6099S T7775Y A8686R C9371Y C10207Y G13459K A13522R T13583Y C14408T A15031W C15360M G16858S G18368K C18747Y C19374Y A19430W G20098K A20268G G20306R T20406Y A20412W C21205Y C21658M C22347S G23009K A23403G AC23894WY CAA23897YWR AA23901RW G24188R C24223Y A26742R C27213Y C27567Y C28854T A29526R

EPI_ISL_476114 LR824521 LR861088
 2020-04-30 2020-06-25
 Switzerland 140066
 C241T C3037T T5085Y T5251K A5257W C10252Y A11246R C12970T C14408T T19393Y A21203R A23403G T24903C C27046T GGG28881AAC G28916A C29274T C29318Y

EPI_ISL_476732
 2020-04-30 2020-06-25
 United States hCoV-19/USA/MN-MDH-1147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_476733
 2020-04-30 2020-06-25
 United States hCoV-19/USA/MN-MDH-1148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_476734
 2020-04-30 2020-06-25
 United States hCoV-19/USA/MN-MDH-1149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C539T C1059T C3037T C14408T A23403G G25563T C28651T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_476735
 2020-04-30 2020-06-25
 United States hCoV-19/USA/MN-MDH-1150/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476736
 2020-04-30 2020-06-25
 United States hCoV-19/USA/MN-MDH-1151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_477294
 2020-04-30 2020-06-29
 United States hCoV-19/USA/MN-MDH-1205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C1812T C3037T C5646T C10319T C13665T C14408T C21721T A23403G G25563T C27964T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_477642 MT679166
 2020-04-30 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1917T C3037T C8327T C14408T A23403G G25563T C29870A

EPI_ISL_477646 MT679170
 2020-04-30 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0430/2020
 AT1- C241T C1059T C3037T C9165T C10626T C14408T A23403G G25563T

EPI_ISL_477647 MT679171
 2020-04-30 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1997T C3037T C14408T G21786T A23403G G25563T G29543T C29870A

EPI_ISL_478532
 2020-04-30 2020-06-30
 United Kingdom hCoV-19/England/NORT-28403F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19021T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479036
 2020-04-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B16C0/2020
 C241T C1714T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_479125
 2020-04-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B21A0/2020
 C241T C3037T C8645T C14408T G21724T A23403G AAGAAAGACAGAATGATTGAACTTTCATT27744- GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_479509
 2020-04-30 2020-06-30
 India hCoV-19/India/NIV-17570/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC AGT29746GAG AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479510
 2020-04-30 2020-06-30
 India hCoV-19/India/NIV-18650/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T A1558G C3037T C5700A C14184T C14408T C17999T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480249
 2020-04-30 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV139/2020
 C241T C3037T C14408T T19839C A23403G C25611A GGG28881AAC

EPI_ISL_482061
 2020-04-30 2020-07-03
 United Kingdom hCoV-19/England/TBSD-2488E2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C874T C2416T C3037T G7071K C8266T C14408T G16245A C19524T A23403G G25563T G26233T G28248T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482096
 2020-04-30 2020-07-03
 United Kingdom hCoV-19/Northern Ireland/NIRE-1013D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482394
 2020-04-30 2020-07-03
 United States hCoV-19/USA/OR-PROV-130/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_482759
 2020-04-30 2020-07-06
 Egypt hCoV-19/Egypt/MASRI-005/2020
 C241T C3037T A6466G C14408T C17766T A23403G T29848A A29850T

EPI_ISL_482765
 2020-04-30 2020-07-06
 Egypt hCoV-19/Egypt/MASRI-014/2020
 C241T C337T C3037T C7875T C14408T C18877T T20520C A23403G G25088T G25563T C26735T C28291T T29848A A29850T

EPI_ISL_483035
 2020-04-30 2020-07-07
 Egypt hCoV-19/Egypt/MASRI-009/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A361G C8782T G10097A G22468T T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_483214
 2020-04-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0547-IPL/2020
 ATTAAAGGTTTATAC1- C92T C241T C1059T A2647G A2712G C3037T C14408T A23403G G25563T C26801T

EPI_ISL_483276
 2020-04-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0643-IPL/2020
 AT1- C241T C3037T C14408T A15363G A20268G A23403G T24076C C28854T

EPI_ISL_483281
 2020-04-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0653-IPL/2020
 AT1- G208T C241T C3037T C14408T A20268G A23403G G23522A C28854T

EPI_ISL_483287
 2020-04-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0662-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483403
 2020-04-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0899-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A15363G A20268G A23403G T24076C C28854T

EPI_ISL_483406
 2020-04-30 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0903-IPL/2020
 AT1- G208T C241T C3037T C14408T A20268G A23403G G23522A C28854T

EPI_ISL_483604
 2020-04-30 2020-07-08
 Singapore hCoV-19/Singapore/581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C6310A C6312A G11083T C13730T C19524T C23929T C26873T C28311T G29616T AAAAAAAAAAAA29892-

EPI_ISL_484289
 2020-04-30 2020-07-08
 United Kingdom hCoV-19/England/NORT-29CACD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18166T C18306T A23403G G24390T C27513T GGG28881AAC C29304T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484290
 2020-04-30 2020-07-08
 United Kingdom hCoV-19/England/NORT-29CADC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2508T C3037T C14408T A20268G A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484326
 2020-04-30 2020-07-08
 United Kingdom hCoV-19/England/NORT-29F699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6768G G7798T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484372
 2020-04-30 2020-07-08
 United Kingdom hCoV-19/England/NOTT-11233E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2775G C2940T C3037T C14408T C21648T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486255
 2020-04-30 2020-07-10
 United States hCoV-19/USA/CA-CZB-1992/2020
 ATTAAAGGTTTATACCT1- C241T C823T C1457T C3037T G3304T C4010M C14408T G18898T G18907T C22208T A23122R A23403G T25902W T25908W G25913S C27800Y C28657Y GGG28881AAC C28909Y

EPI_ISL_486256 MT750436
 2020-04-30 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1993/2020
 AT1- C241T C823T C1457T C3037T G3304T C14408T G18898T G18907T C22208T A23403G GGG28881AAC

EPI_ISL_486257 MT750437
 2020-04-30 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C823T C1457T C3037T G3304T C14408T G18898T G18907T C22208T A23403G T25902W T25908W G25913S GGG28881AAC

EPI_ISL_486258
 2020-04-30 2020-07-10
 United States hCoV-19/USA/CA-CZB-1995/2020
 C241T C823T C1457T C3037T G3304T C14408T G18898T G18907T C22208T A22904W A23122R A23403G T25902W T25908W G25913S GGG28881AAC

EPI_ISL_486259
 2020-04-30 2020-07-10
 United States hCoV-19/USA/CA-CZB-1999/2020
 ATTA1- C241T C823T C1457T C3037T G3304T C14408T G18898T G18907T C22208T A23122R A23403G GGG28881AAC C29274Y

EPI_ISL_486261 MT750439
 2020-04-30 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2001/2020
 C241T C823T C1457T C3037T G3304T C14408T G18898T G18907T C22208T A23403G GGG28881AAC T29867H

EPI_ISL_486262 MT750440
 2020-04-30 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2002/2020
 AT1- C241T C823T C1457T C3037T G3304T C14408T G15906T G18898T G18907T A23403G GGG28881AAC T29867Y

EPI_ISL_486263 MT750441
 2020-04-30 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2003/2020
 A1- C241T C823T C1457T C3037T G3304T C14408T G18898T G18907T C22208T C22879Y A23122R A23403G T25902W T25908W G25913S GGG28881AAC

EPI_ISL_486265
 2020-04-30 2020-07-10
 United States hCoV-19/USA/CA-CZB-2006/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C379A C1059T C3037T C14408T C18576Y C22224T A22904M A23122R A23403G A24580W G25563T C29205T C29724Y

EPI_ISL_486274
 2020-04-30 2020-07-10
 United States hCoV-19/USA/CA-CZB-2022/2020
 ATTAAAGGTTTATACC1- A30R C241T C379A C1059T C1170T C3037T C14408T C22224T A22904M A23122R A23403G G25563T T25902W T25908W G25913S C26013T T27318A G28703T

EPI_ISL_486312 MT750473
 2020-04-30 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C3037T G4285R C8327T C14408T A23122V A23403G C24442T A24862G C24964Y T25902W T25908W G25913S G26193T

EPI_ISL_486437
 2020-04-30 2020-07-10
 Latvia hCoV-19/Latvia/053/2020
 C241T C3037T A10291G C14408T A23403G G25471T GGG28881AAC

EPI_ISL_487658
 2020-04-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T433A C1059T C3037T T7814C C9561T C14408T G18213T A18818G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487690
 2020-04-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C854T ATG1605- A10552G T26038C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487830
 2020-04-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7814C C14408T G18213T A18818G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487843
 2020-04-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487905
 2020-04-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487990
 2020-04-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7814C C14408T G18213T A18818G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487994
 2020-04-30 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C12915T C14408T A20268G A23403G G27987T C28775T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488150
 2020-04-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-29F4EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7675T C7851T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488164
 2020-04-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-29F57E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2854G C3037T G5716T C8772T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488172
 2020-04-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-29E8A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488776
 2020-04-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-28404E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3309G C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489794 MT757080
 2020-04-30 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0385/2020
 ATTAAAGGTTTA1- T148A C241T C1059T C3037T T5185C C5884T C9228T C13487T C14408T G15543T C18888T C22858T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_489795 MT757081
 2020-04-30 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0386/2020
 AT1- C241T C541T C835T C3037T C14408T C18877T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_489796 MT757082
 2020-04-30 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0387/2020
 ATT1- C241T G680A C2416T C3037T C11195T C14408T G15202T C22444T A23403G G25563T C26228T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_489799 MT757085
 2020-04-30 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0390/2020
 AT1- C241T C3037T C4551T C14408T C18877T A23403G G25563T G27987T G29212A C29520T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_490492
 2020-04-30 2020-07-15
 United Kingdom hCoV-19/England/NORT-29F5F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3820G C14408T A23403G C25509T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490624
 2020-04-30 2020-07-15
 United Kingdom hCoV-19/England/SHEF-CCBB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3828T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490639
 2020-04-30 2020-07-15
 United Kingdom hCoV-19/England/SHEF-D0E69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2940T C3037T C10341T C14408T C19524T T21467C A23403G T28693C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491503
 2020-04-30 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB3843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A23403G A24862G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491598
 2020-04-30 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB3831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G C21998T A23403G A28390G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492040
 2020-04-30 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_32317/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C G29862C GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_492041
 2020-04-30 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_32321/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C14408T A23403G G25135T T27299C GGG28881AAC T29148C C29218T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861TTCA

EPI_ISL_492900
 2020-04-30 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C0DEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T A7068W T11638C C14408T TACATG21765- A23403G GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492909
 2020-04-30 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C0DA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T T11638C C14408T A23403G GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493444
 2020-04-30 2020-07-21
 United Kingdom hCoV-19/England/BIRM-6161A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T T5380C G10097A C14408T A23403G C23731T T25932C G28580T GGG28881AAC A29006C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493445
 2020-04-30 2020-07-21
 United Kingdom hCoV-19/England/BIRM-61629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4347T C8139T G9203A G10097A C14408T A23403G C23731T G28001T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493447
 2020-04-30 2020-07-21
 United Kingdom hCoV-19/England/BIRM-61656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2061T C3037T G3216T C5140T A12617G C14408T A23403G GGG28881AAC G28903T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493448
 2020-04-30 2020-07-21
 United Kingdom hCoV-19/England/BIRM-61665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6710T C14408T C15277T G16475A T20561C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493449
 2020-04-30 2020-07-21
 United Kingdom hCoV-19/England/BIRM-61674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C3923A C11195T A11384C C12738T C14408T G17523T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493516
 2020-04-30 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E3FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G C21707T A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493527
 2020-04-30 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E7A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7764T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493529
 2020-04-30 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12503C C14408T G18651T G21157A A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493530
 2020-04-30 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T C10341T C14408T C16468T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493532
 2020-04-30 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E8EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C7056T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493533
 2020-04-30 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12789T C13862T C14408T A23403G A23796G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494475
 2020-04-30 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1277/2020
 ATTAAAGGTTTATA1- C241T C1457T C3037T C6848T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494476
 2020-04-30 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1279/2020
 C241T C3037T C10605T C14408T C14708T A20268G A23403G C24026T G26193T C28854T C29153A

EPI_ISL_494477
 2020-04-30 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G C27509T C28854T

EPI_ISL_494489
 2020-04-30 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1311/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494491
 2020-04-30 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G A23403G T24076C C28854T G29140T

EPI_ISL_494493
 2020-04-30 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G G25396T C28854T

EPI_ISL_494494
 2020-04-30 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G G25396T C28854T

EPI_ISL_494497
 2020-04-30 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1333/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T G12817T C14408T C14818T C16762T A23403G G25563T C27513T

EPI_ISL_494499
 2020-04-30 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C6906T C14408T C14818T T16264G C16762T A23403G G25563T G26207T A29869G

EPI_ISL_494502
 2020-04-30 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1340/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494514 MT786813
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/IL-QDX-195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T G13812T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494515 MT786814
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/IL-QDX-198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1887T C3037T C5183T C12970T C14408T C17639T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494516 MT786815
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/IL-QDX-199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C9158T C10186T C14352T C14408T A17615G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494529 MT786828
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/NC-QDX-201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6258T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494530 MT786829
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/NC-QDX-202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C414T C3037T C6258T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494532 MT786831
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/NM-QDX-209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2399T C3037T A12402C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494533 MT786832
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/NM-QDX-210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1514T C2399T C3037T G4951A C14408T G18255T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494534 MT786833
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/NM-QDX-211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T C14408T A20268G A23403G C28087T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494535 MT786834
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/NM-QDX-212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T A25590G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494536 MT786835
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/NM-QDX-213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T C14408T C18032T A20268G A23403G G23868C C27735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494547 MT786846
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/TX-QDX-203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T T2698C C3037T C14408T C16017T A23403G A25822T G27561T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494548 MT786847
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/TX-QDX-204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T9208A C10641T C14408T G17658T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494549 MT786848
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/WI-QDX-193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494550 MT786849
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/WI-QDX-194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494551 MT786850
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/WI-QDX-196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18493T C18877T A23403G G25563T AGGCCACGCGGAGT29735- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494552 MT786851
 2020-04-30 2020-07-22
 United States SARS-CoV-2/human/USA/WI-QDX-197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494621
 2020-04-30 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494664
 2020-04-30 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1570/2020
 ATTAAAGGTT1- C241T C1457T C3037T C14408T C14925T A20268G A23403G T24076C C28854T

EPI_ISL_495113
 2020-04-30 2020-07-22
 United Kingdom hCoV-19/England/BRIS-18545F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T C14408T T15207C C17249T G17722T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498727 MT806788
 2020-04-30 2020-07-27
 United States SARS-CoV-2/human/USA/LA-QDX-256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G16935T G17110T A23403G G25563T G26690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498729 MT806790
 2020-04-30 2020-07-27
 United States SARS-CoV-2/human/USA/MN-QDX-257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11557A C14408T A20073G A20755C C23114T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498731 MT806792
 2020-04-30 2020-07-27
 United States SARS-CoV-2/human/USA/NC-QDX-252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6258T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498732 MT806793
 2020-04-30 2020-07-27
 United States SARS-CoV-2/human/USA/NC-QDX-253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6258T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498733 MT806794
 2020-04-30 2020-07-27
 United States SARS-CoV-2/human/USA/NC-QDX-254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6258T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498734 MT806795
 2020-04-30 2020-07-27
 United States SARS-CoV-2/human/USA/NM-QDX-263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1489T C3037T C14408T A20268G C23248T A23403G G28109T C28717T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498735 MT806796
 2020-04-30 2020-07-27
 United States SARS-CoV-2/human/USA/NM-QDX-264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T G6404T C14408T C17999T A20268G A23403G T25123C G28378T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498741 MT806803
 2020-04-30 2020-07-27
 United States SARS-CoV-2/human/USA/TX-QDX-255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1747A C3037T C14408T T19449A A23403G G25563T C26885T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498743 MT806805
 2020-04-30 2020-07-27
 United States SARS-CoV-2/human/USA/TX-QDX-262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500623
 2020-04-30 2020-07-29
 Australia hCoV-19/Australia/NSW2128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10435C C10851T C14408T A23403G T24552C G25563T C29545T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500953
 2020-04-30 2020-07-30
 United Kingdom hCoV-19/England/201881261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T G11230T C13517T G22696T T28144C G28167A G28703A G28878A G29742A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_507038 MT820481
 2020-04-30 2020-07-30
 Saudi Arabia SARS-CoV-2/human/SAU/KFSHRC50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507112
 2020-04-30 2020-08-03
 United Kingdom hCoV-19/England/NORT-29A1D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T C14408T G17722T G22093A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507113
 2020-04-30 2020-08-03
 United Kingdom hCoV-19/England/NORT-29A388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G21624T G26144T G29212T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507181
 2020-04-30 2020-08-03
 United Kingdom hCoV-19/Scotland/EDB3854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T G29543C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507211
 2020-04-30 2020-08-03
 Russia hCoV-19/Russia/Novosibirsk-RII27317S/2020
 AT1- C241T C3037T C14408T A23403G G27415T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507234
 2020-04-30 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11149S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C12115T C14408T T17694C A23403G C23929T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507235
 2020-04-30 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11149V/2020
 ATTA1- C241T C3037T C12115T C14408T T17694C A23403G C23929T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507236
 2020-04-30 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11151S/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507237
 2020-04-30 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11153S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T14313C C14408T G20060T G21800T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507238
 2020-04-30 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11155S/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T A4584C C14408T A23403G C28854T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507245
 2020-04-30 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11247S/2020
 AT1- C241T C1059T C1288T C2061T C3037T C9430T C14408T A20755C A23403G T25028C G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507246
 2020-04-30 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11250S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507247
 2020-04-30 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11251S/2020
 C241T G1401A C3037T C5833T C14408T C16289T A21851C A23403G G25770T G27415T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507248
 2020-04-30 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11256S/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G8488A C14408T A23403G T25745C C26750T G27798T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_509531 MT873803
 2020-04-30 2020-08-05
 United States SARS-CoV-2/human/USA/UT-02886/2020
 C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G25563T C27964T

EPI_ISL_509535 MT873807
 2020-04-30 2020-08-05
 United States SARS-CoV-2/human/USA/UT-02904/2020
 C241T C1059T C3037T C4878T C14408T A22525G A23403G G25563T C27964T C29272T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_509540 MT873812
 2020-04-30 2020-08-05
 United States SARS-CoV-2/human/USA/UT-02915/2020
 ATTA1- C241T C1059T C3037T A7870G G12315A C14408T A23403G G25563T G27437T G27670T C27964T G29543T

EPI_ISL_512954
 2020-04-30 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH544/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_512966
 2020-04-30 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH572/2020
 C241T C3037T C14408T A23403G G23666C GGG28881AAC -29866AGCCACAAC

EPI_ISL_512969
 2020-04-30 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH576/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T GGG28881AAC

EPI_ISL_512970
 2020-04-30 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH577/2020
 C241T C3037T C14408T A23403G G25563T C25685T C26735T

EPI_ISL_512986
 2020-04-30 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH613/2020
 C241T C3037T C14408T G23666C GGG28881AAC

EPI_ISL_513168
 2020-04-30 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH599/2020
 C241T C8394T C14408T C22444T C23188T A23403G G25563T C26735T C28854T

EPI_ISL_513175
 2020-04-30 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH655/2020
 C241T C3037T C14408T A23403G G23426T T24295C G25563T C26735T

EPI_ISL_513181
 2020-04-30 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH702/2020
 C241T C3037T C8782T A10323G C14408T C18877T A23403G G25563T C26735T G29868C

EPI_ISL_513598
 2020-04-30 2020-08-13
 Democratic Republic of the Congo hCoV-19/DRC/4541/2020
 ATTAAA1- C241T G2531T C3037T G11083T C14408T C15324T G19300T A23403G G28109T G28899T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_513600
 2020-04-30 2020-08-13
 Democratic Republic of the Congo hCoV-19/DRC/4561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T G11083T C11671T C14408T C15324T C17746T C18508T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_513601
 2020-04-30 2020-08-13
 Democratic Republic of the Congo hCoV-19/DRC/4562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A4457G C5907T C12312T C14408T C15324T G17721T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_513605
 2020-04-30 2020-08-13
 Democratic Republic of the Congo hCoV-19/DRC/4614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10834T C11195T C14408T C15324T C16952T A23403G C23987T G25471T G28690T C29077T G29140C ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_513606
 2020-04-30 2020-08-13
 Democratic Republic of the Congo hCoV-19/DRC/4631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2441A C3037T C3653T A8651C G11083T C14408T C15324T G15406T A23403G C27059T G28946T C29370T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_513607
 2020-04-30 2020-08-13
 Democratic Republic of the Congo hCoV-19/DRC/4633/2020
 ATTAAAGGTTTATACCT1- C241T C3037T G3052T C3117A C8293T C14408T T18488C A23403G G24197T T24739C A26530G C29708T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_513608
 2020-04-30 2020-08-13
 Democratic Republic of the Congo hCoV-19/DRC/4642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3052T C8293T C14408T T17268C T18488C A23403G G24197T T24739C A26530G C29708T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_513609
 2020-04-30 2020-08-13
 Democratic Republic of the Congo hCoV-19/DRC/4647/2020
 ATTAAAGGTTTA1- C241T C3037T G3052T C8293T C14408T T18488C A23403G G24197T T24739C A26530G C29708T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_513610
 2020-04-30 2020-08-13
 Democratic Republic of the Congo hCoV-19/DRC/4653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C106T C241T C3037T G3052T C8293T CTA9857- C14408T T18488C A23403G G24197T T24739C A26530G C29708T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_513688 MT877383
 2020-04-30 2020-08-12
 United States SARS-CoV-2/human/USA/UT-02897/2020
 ATTAAA1- C241T C3037T C14408T A23403G C26013T C26256T C29668T

EPI_ISL_514617 MT892964
 2020-04-30 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G5017T T8162C C8782T G14350T C17747T A17858G C18060T A24694T T28144C C28310A G28812T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515403
 2020-04-30 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0136/2020
 ATTAAA1- C241T C379A C1059T C3037T C11102T CC14407TT G18984T A23403G G25563T C26509T

EPI_ISL_515404
 2020-04-30 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0137/2020
 ATTA1- C241T C379A C1059T C3037T C11102T CC14407TT G18984T A23403G G25563T C26509T

EPI_ISL_515405
 2020-04-30 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C379A C1059T C3037T C14408T A23403G C24863T G25563T

EPI_ISL_515407
 2020-04-30 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0141/2020
 ATT1- C241T C1059T G1306T C3037T C14408T G18255T G20580T G21986A A23403G G25563T C28290T

EPI_ISL_516655 MT913092
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T G1042A C1059T C3037T C14408T C14925T A23403G G25563T C28651T T29867A C29870A

EPI_ISL_516662 MT913098
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T G1042A C1059T C3037T C14408T C14925T A23403G G25563T C28651T

EPI_ISL_516663 MT913099
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T224C C241T G1042A C1059T C3037T C14408T C14925T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516666 MT913102
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T A1393G C3037T C14408T C16260T C18060T A23403G G25563T G26690T C28821A

EPI_ISL_516667 MT913103
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0876/2020
 ATTAAAGGT1- C241T C1059T C3037T C11224T C11572T C13721T C14408T C19938T A23403G G25563T G27506C G29828T C29870A

EPI_ISL_516668 MT913104
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0877/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T T1675C C3037T C10313T C14408T A23403G G25563T C28887T C29870A

EPI_ISL_516669 MT913105
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0878/2020
 AT1- C241T C1059T C3037T C14408T C16260T A23403G G25563T G26690T C28821A C29870A

EPI_ISL_516670 MT913106
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0880/2020
 ATTA1- C241T C2416T C3037T C14408T C14621T A23403G G25563T G26233T C29870A

EPI_ISL_516671 MT913107
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0881/2020
 ATTA1- C241T C3037T C5869T C14408T C18877T C21575T A22503T A23403G G25563T G29864S C29870A

EPI_ISL_516673 MT913109
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0883/2020
 ATTA1- C241T C3037T C7600T C14408T C15324T A23403G C27999T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516676 MT913112
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0887/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G C23683T G25563T C29247T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_516714 MT913147
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0850/2020
 ATTAAA1- G7T C44G C241T C1059T G2272T C3037T C3990T C14408T A23403G T23602C G25563T C29095T C29870A

EPI_ISL_516715 MT913148
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C3811T C5175T G5954A C12400T A14021G C14408T A23403G G25563T

EPI_ISL_516716 MT913149
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T G2075A C3037T A3123C C11916T C14408T A23403G G25563T G29868R C29870A

EPI_ISL_516717 MT913150
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0854/2020
 TTAAAGGTTTATACC2- C241T C1059T C1594T C1917T C3037T ATT6684- C14408T C20719T A23403G G25073A G25563T C29870A

EPI_ISL_516718 MT913151
 2020-04-30 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C1288T C1917T C3037T C14408T A23403G G25563T G28851T C29870A

EPI_ISL_524577
 2020-04-30 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE7A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1437T C3037T T13006C C14408T C17288T A23403G A24070T G25563T C25688T C27945T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524583
 2020-04-30 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE70E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997Y C3037T C14408T G16852T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524589
 2020-04-30 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE5E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11152T C14408T G22014A A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524591
 2020-04-30 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26447T G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524597
 2020-04-30 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AEAE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25350T C28866T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524604
 2020-04-30 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25429T G26257A C27600T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524606
 2020-04-30 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE74A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C3037T C11650T C14408T A23403G C24861A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524609
 2020-04-30 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8612T C14408T A23403G G25552T GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524612
 2020-04-30 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1437T C3037T T13006C C14408T A23403G A24070T G25563T C25688T C26013T C27945T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524616
 2020-04-30 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE62F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4149C A8031G C12525T C14408T A23403G G25599T GGG28881AAC C29353T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524617
 2020-04-30 2020-08-28
 United Kingdom hCoV-19/England/CAMB-1AE73B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10116T C14408T A14737G C19017T A20055G A23403G GGG28881AAC T29377A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526474
 2020-04-30 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB3829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526486
 2020-04-30 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB5905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526495
 2020-04-30 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T C17550T A20268G A23403G C24865T G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526496
 2020-04-30 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526497
 2020-04-30 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6882/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526498
 2020-04-30 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2790T C2836T C3037T G6461T C14408T A20268G T23371C A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526499
 2020-04-30 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T C17550T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526500
 2020-04-30 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T C17550T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526501
 2020-04-30 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526502
 2020-04-30 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526503
 2020-04-30 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T C17550T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526504
 2020-04-30 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T C17550T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526506
 2020-04-30 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526507
 2020-04-30 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T C17550T A20268G A23403G A25576G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526508
 2020-04-30 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G G21641T A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526773
 2020-04-30 2020-09-02
 United Kingdom hCoV-19/England/201890916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T772C C1059T C3037T T8176G C11416T C14408T G20491T A23403G G24368T G25563T T26248C A26528T C29284T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527685
 2020-04-30 2020-09-04
 United States hCoV-19/USA/MN-CDC-6256/2020
 C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527686
 2020-04-30 2020-09-04
 United States hCoV-19/USA/MN-CDC-6259/2020
 C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527687
 2020-04-30 2020-09-04
 United States hCoV-19/USA/MN-CDC-6262/2020
 C8616Y C8782Y C17747T A17858G C18029T C18060T A24694T C26461T C27881T T28098C T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527689
 2020-04-30 2020-09-04
 United States hCoV-19/USA/MN-CDC-6268/2020
 C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528709
 2020-04-30 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/H1/2020
 C241T C3037T C4794T G5924A C14408T C16726T T21775G A23403G C25585A GGG28881AAC G29742A

EPI_ISL_528718
 2020-04-30 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/H27/2020
 C241T C3037T G5924A C14408T T21775G A23403G G24928T GGG28881AAC

EPI_ISL_530082
 2020-04-30 2020-09-10
 Spain hCoV-19/Spain/MD-LP85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530171 MT997693
 2020-04-30 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1575/2020
 AT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_534770
 2020-04-30 2020-09-14
 United Kingdom hCoV-19/England/OXON-B279F/2020
 C241T C3037T G10097A C14408T A23403G C23731T G24386T G28580T GGG28881AAC

EPI_ISL_534807
 2020-04-30 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2CDC/2020
 C241T T1333A C3037T C6968T T8215C C14408T A23403G GGG28881AAC

EPI_ISL_534996
 2020-04-30 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4B73/2020
 C241T C3037T T9148C G10097A G11083T C14408T A23403G C23731T GGG28881AAC AAAAAAAA29896-

EPI_ISL_535003
 2020-04-30 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4C8F/2020
 C241T C2910T C3037T C14408T G22592T A23403G G24087T GGG28881AAC

EPI_ISL_535008
 2020-04-30 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4D13/2020
 C241T T1333A C3037T C6968T T8215C C14408T A23403G GGG28881AAC

EPI_ISL_537505
 2020-04-30 2020-09-16
 United States hCoV-19/USA/CA-UCLA-17/2020
 ATTAAAGGTTTATA1- C241T C313T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27972T GGG28881AAC C29546A GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_539486
 2020-04-30 2020-09-18
 India hCoV-19/India/PB-IMT-L176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTC1- C6312A C8878A C8905A A9235T G9237C G11083T C11572T C13730T C21077T C23929T T25272G G25314T C28311T C28391T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_539802
 2020-04-30 2020-09-20
 United States hCoV-19/USA/WY-WYPHL-20011372/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T A23403G G25563T T29131C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541368
 2020-04-30 2020-09-22
 Brazil hCoV-19/Brazil/RJ-2999/2020
 ATT1- C241T C3037T G11222A C14408T A23403G T27299C GGG28881AAC T29148C G29861T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_541369
 2020-04-30 2020-09-22
 Brazil hCoV-19/Brazil/RJ-3021/2020
 ATTA1- C241T C2675T C3037T C14408T A23403G T27299C GGG28881AAC T29148C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_542699
 2020-04-30 2020-09-23
 United States hCoV-19/USA/TX-HMH-1401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1738T C3037T T6130C C10319T C14408T C16308T C16694T G23292T A23403G C26882T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542723
 2020-04-30 2020-09-23
 United States hCoV-19/USA/TX-HMH-1436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C1059Y C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_542740
 2020-04-30 2020-09-23
 United States hCoV-19/USA/TX-HMH-1468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18086T A23403G C23707T G25494T C29441G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542746
 2020-04-30 2020-09-23
 United States hCoV-19/USA/TX-HMH-1484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T A11430G C14408T C19813T A23403G C24897T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542751
 2020-04-30 2020-09-23
 United States hCoV-19/USA/TX-HMH-1490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4162T C10188T C14408T C19709T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542753
 2020-04-30 2020-09-23
 United States hCoV-19/USA/TX-HMH-1495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T8082C C8092T C14408T C15342T C21431T A23403G C24865T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542759
 2020-04-30 2020-09-23
 United States hCoV-19/USA/TX-HMH-1503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T G4631A C6310T C14408T A23403G A25315G C25413T G26122A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542820
 2020-04-30 2020-09-23
 United States hCoV-19/USA/TX-HMH-1760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545229
 2020-04-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-2293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4162T C10188T C14408T C19709T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545235
 2020-04-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-2305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3784T C14408T C20628T A23403G C24130T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547455
 2020-04-30 2020-09-24
 Netherlands hCoV-19/Netherlands/FL-RIVM-10142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547456
 2020-04-30 2020-09-24
 Netherlands hCoV-19/Netherlands/FL-RIVM-10143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T G20113T A20268G C20740A A23403G G26501T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547476
 2020-04-30 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4345T C14408T T19209C C22000T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547509
 2020-04-30 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T16515C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547511
 2020-04-30 2020-09-24
 Netherlands hCoV-19/Netherlands/OV-RIVM-10145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C14408T C21575T A23403G G25429T C25916T G25947T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547570
 2020-04-30 2020-09-24
 Brazil hCoV-19/Brazil/SP-314/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1943T C3037T C14408T A23403G T27299C GGG28881AAC T29148C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_559674
 2020-04-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-4822C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G704A C3037T C14408T CG21304AA G22894T A23403G T24505C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559687
 2020-04-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-48249D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6527K C14408T C16468Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559690
 2020-04-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-481FAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C3037T C12153T C13862T C14408T C19186T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559976
 2020-04-30 2020-09-28
 United Kingdom hCoV-19/Scotland/EDB6890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T C17550T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560635
 2020-04-30 2020-09-29
 France hCoV-19/France/GE8815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2117A C3037T G3340T T13472C C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568970
 2020-04-30 2020-10-02
 France hCoV-19/France/IHU-0799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T ATG1605- C3037T C14408T C18175T A20268G A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT460127
 2020-04-30 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1107/2020
 ATTAAA1- C8782T C10776T C17747T A17858G C18060T C18452T T20315A T28144C G29560R AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT460128
 2020-04-30 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1108/2020
 ATT1- C241T C3037T C14408T C23220T A23403G GGG28881AAC

MT460129
 2020-04-30 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1109/2020
 ATTAAAGGTTTA1- C241T C3037T C5467T C8389T G8785A C14408T A23403G C25066Y G25563T C26684T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT460130
 2020-04-30 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1110/2020
 ATTA1- G17079T C18060T G25177T G25775T T27843C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT460132
 2020-04-30 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1112/2020
 ATTAA1- C241T C1059T G2764T C3037T C4069T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT460133
 2020-04-30 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1113/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C G29540A

MT460136
 2020-04-30 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1116/2020
 ATTA1- C241T C1059T G2764T C3037T C4897T C14408T A23403G G25563T C27294T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

MT460138
 2020-04-30 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1118/2020
 ATTAAAGGTTTA1- C241T C3037T T13572C C14408T A23403G C24863T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT810505
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1495-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810702
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1277-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C6848T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810703
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1279-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C10605T C14408T C14708T A20268G A23403G C24026T G26193T C28854T C29153A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810704
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1280-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C27509T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810716
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1311-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810718
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1315-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T G29140T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810721
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1322-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G G25396T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810722
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1324-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G G25396T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810725
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1333-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G12817T C14408T C14818T C16762T A23403G G25563T C27513T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810727
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1335-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C6906T C14408T C14818T T16264G C16762T A23403G G25563T G26207T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810730
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1340-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810865
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1570-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C14408T C14925T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811230
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0547-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2647G A2712G C3037T C14408T A23403G G25563T C26801T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811289
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0643-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A15363G A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811294
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0653-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G G23522A C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811300
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0662-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811410
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0899-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A15363G A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811413
 2020-04-30 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0903-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G G23522A C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873087
 2020-04-30 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01073/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G23587T G25563T GTT26155- G28300T

MT873159
 2020-04-30 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01443/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29773T

MT873226
 2020-04-30 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01001/2020
 ATTAAA1- C241T C1059T C3037T A8101T C14408T A23403G G25563T

MT873239
 2020-04-30 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01021/2020
 ATTAAA1- G105T C241T T2301C C3037T C8394T C14408T C18877T C20594T A23403G G25563T

MT873253
 2020-04-30 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01022/2020
 ATT1- G105T C241T C3037T C14408T C18877T G20940A A23403G G25563T C28093T TTC29728- G29745A

MT873278
 2020-04-30 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C3619T C7299T C11916T C14408T A23403G G25563T

MT873347
 2020-04-30 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01018/2020
 ATT1- C241T C2416T C3037T T10216C C14408T A23403G G25563T G26233T

MT873410
 2020-04-30 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01452/2020
 C241T ATG518- T833C C1059T C3037T C14408T A23403G G25563T C27964T

MT873412
 2020-04-30 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01017/2020
 ATTAA1- A6T C241T C2416T C3037T C5506A T10216C C14408T A23403G G25563T G26233T

MT873420
 2020-04-30 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01071/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T

MT873447
 2020-04-30 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01448/2020
 C241T C2416T C3037T C14408T C17002T A23403G G25563T

MT967938
 2020-04-30 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6256/2020
 C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

MT967939
 2020-04-30 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6259/2020
 C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

MT967940
 2020-04-30 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6262/2020
 C8616Y C8782Y C17747T A17858G C18029T C18060T A24694T C26461T C27881T T28098C T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT967942
 2020-04-30 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6268/2020
 C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_437684
 2020-04-xx 2020-05-11
 Ireland hCoV-19/Ireland/20W266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6861T C14408T C15216T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437685
 2020-04-xx 2020-05-11
 Ireland hCoV-19/Ireland/20W267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20383T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437686
 2020-04-xx 2020-05-11
 Ireland hCoV-19/Ireland/20W268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1648T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437687
 2020-04-xx 2020-05-11
 Ireland hCoV-19/Ireland/20W269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C C897T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_437688
 2020-04-xx 2020-05-11
 Ireland hCoV-19/Ireland/20W270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1648T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_445782
 2020-04-xx 2020-05-16
 United Kingdom oV-19/Wales/PHWC-2B922/2020
 C241T C3037T T3100G G10097A C13584T C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_454412 MT522852
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200213_2020/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T C29708T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454413 MT522853
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200214_2020/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454414 MT522854
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200215_2020/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454415 MT522855
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200216_2020/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C5884T C11919T C13487T C14408T C22858T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454810
 2020-04-xx 2020-05-28
 United States hCoV-19/USA/NC_200271/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T C16887T G21974C G23224T A23403G G25563T G26233T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_454811
 2020-04-xx 2020-05-28
 United States hCoV-19/USA/NC_200272/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T C14649T A23403G G25563T C26625T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454812
 2020-04-xx 2020-05-28
 United States hCoV-19/USA/NC_200278/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1917T C3037T C7945T C14408T G20005A A22036G A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_454813
 2020-04-xx 2020-05-28
 United States hCoV-19/USA/NC_200290/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A20755C A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_454818 MT528620
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200318/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C784T C2416T C3037T G4523A C10712T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_454819 MT528621
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200319/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_458002
 2020-04-xx 2020-06-02
 United States hCoV-19/USA/NC_200460/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T G21974C G23224T A23403G G25563T G26233T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_458003
 2020-04-xx 2020-06-02
 United States hCoV-19/USA/NC_200467/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T C21846T G21974C G23224T A23403G G25563T G26233T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_458004
 2020-04-xx 2020-06-02
 United States hCoV-19/USA/NC_200468/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T C21846T G21974C G23224T A23403G G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_458005
 2020-04-xx 2020-06-02
 United States hCoV-19/USA/NC_200486/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T G21974C G23224T A23403G G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_458291
 2020-04-xx 2020-06-03
 United States hCoV-19/USA/NC_200429/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A361G C8782T C18929T G20670A G22468T T25559G T28144C G28380T G28878A G29742A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_458294
 2020-04-xx 2020-06-03
 United States hCoV-19/USA/NC_200395/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C12513T C14408T G21974C G23224T A23403G G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_458295
 2020-04-xx 2020-06-03
 United States hCoV-19/USA/NC_200399/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2416T C3037T T12112C C14408T G21974C G23224T A23403G G25563T A26126T G26233T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_458296
 2020-04-xx 2020-06-03
 United States hCoV-19/USA/NC_200401/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C A13522G C14408T G21974C G23224T A23403G T24948C G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_458297
 2020-04-xx 2020-06-03
 United States hCoV-19/USA/NC_200409/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T G21974C G23224T A23403G G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_462439 LC553257
 2020-04-xx 2020-06-03
 Japan TKY9588_2020
 ATTAAAGGTTTATACCTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_462440 LC553258
 2020-04-xx 2020-06-03
 Japan TKY9810_2020
 ATTAAAGGTTTATAC1- C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_462441 LC553259
 2020-04-xx 2020-06-03
 Japan TKY10256_2020
 ATTAAAGGTTTATACCTTCCCAGG1- C313T G1322T C3037T C12025T C14408T C20762T A22991G A23403G GGG28881AAC

EPI_ISL_462442 LC553260
 2020-04-xx 2020-06-03
 Japan TKY10459_2020
 ATTAAAGGTTTATACCT1- C241T C313T C3037T C14408T C23185T A23403G GGG28881AAC G29764T

EPI_ISL_462443 LC553261
 2020-04-xx 2020-06-03
 Japan TKY10461_2020
 ATTAAAGGTTTATACCTT1- C241T C313T C3037T C14408T G20476T A23403G GGG28881AAC C29733T G29764T

EPI_ISL_462444 LC553262
 2020-04-xx 2020-06-03
 Japan TKY10466_2020
 ATTAAAGGTTTATACCTTCC1- C241T C313T C3037T C14408T C23185T A23403G GGG28881AAC G29764T

EPI_ISL_462445 LC553263
 2020-04-xx 2020-06-03
 Japan TKY10468_2020
 ATTAAAGGTTTATACCTT1- C241T C313T C3037T C14408T C23185T A23403G GGG28881AAC G29764T

EPI_ISL_466696
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_00576317/2020
 C241T C1059T C3037T C10277T C14408T A23403G G25563T C27964T

EPI_ISL_466697
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_00646519/2020
 C241T C1059T C3037T C10277T C14408T A23403G G25563T C27964T

EPI_ISL_466698
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_00655815/2020
 A187G C241T C1616T C1878T C3037T C14408T A23403G

EPI_ISL_466699
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_00696199/2020
 C241T C335T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_466700
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_00713032/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_466701
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_00714140/2020
 G101A C999T C4999T C5170T C8782T C8841T T17673C C17747T A17858G C18060T T28144C

EPI_ISL_466702
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_00809458/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_466703
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_01210684/2020
 C8782T C17747T A17858G C18060T T28144C G29212A

EPI_ISL_466704
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_01218976/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_466705
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_01222955/2020
 A187G C241T C1616T C3037T C14408T A23403G G27147T C28708T

EPI_ISL_466706
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_01254071/2020
 A187G C241T C1616T C3037T C5365T C14408T T19692C C21306T A23403G

EPI_ISL_466707
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_01294861/2020
 G3242T C8782T G13213A C17747T A17858G C18060T T21570G T28144C

EPI_ISL_466708
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_01296812/2020
 G3242T C8782T G13213A C17747T A17858G C18060T T21570G T28144C

EPI_ISL_466709
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_01468719/2020
 A187G C241T C1616T C1878T C3037T C14408T A23403G

EPI_ISL_466710
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_01560118/2020
 C241T C3037T C14408T C18877T A23403G G25563T

EPI_ISL_466711
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_01594615/2020
 C241T C1059T C3037T G4559A C10277T C14408T A23403G G25563T C27964T

EPI_ISL_466712
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02045287/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_466713
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02051350/2020
 G2059T C8782T T9477A C14805T T23978C G25979T C26124T T28144C C28657T C28863T

EPI_ISL_466714
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02077392/2020
 C241T C3037T C10507T C14408T C14931T C17550T C18877T A23403G G25563T G29395T

EPI_ISL_466715
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02083468/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_466716
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02091552/2020
 T490A C3177T C8782T T18736C G21777A C24034T T26729C C27635T G28077C T28144C A29567C A29700G

EPI_ISL_466717
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02168448/2020
 A187G C241T C1616T A1839G C3037T C14408T A23403G

EPI_ISL_466718
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02169597/2020
 A187G C241T C1616T A1839G C3037T C14408T A23403G

EPI_ISL_466719
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02185653/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_466720
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02246883/2020
 C6606T C8782T C17747T A17858G C18060T T28144C

EPI_ISL_466721
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02415563/2020
 C241T C3037T C14408T G17334T G18318T A20268G A23403G C28854T

EPI_ISL_466722
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02472119/2020
 A187G C241T C1616T C3037T G11083T C14408T A23403G

EPI_ISL_466723
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02502338/2020
 A187G C241T C1616T C3037T C3773T C14408T A23403G

EPI_ISL_466724
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02511020/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_466725
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02585169/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_466726
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02594336/2020
 C241T C1059T C3037T G4559A C10277T C14408T A23403G G25563T A27392G C27964T

EPI_ISL_466727
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02803451/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29364T

EPI_ISL_466728
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02807114/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_466729
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02811162/2020
 A187G C241T C1616T T2734C C3037T C14408T C19547T A23403G G25690T G27147T C28708T

EPI_ISL_466730
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02820264/2020
 A187G C241T C1616T C3037T C14408T A23403G A29112T

EPI_ISL_466731
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02822314/2020
 A187G C241T C1616T C3037T C11884T C14408T A23403G G29425T

EPI_ISL_466732
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02887476/2020
 A187G C241T C1616T C3037T C14408T C19547T A23403G G25690T G27147T C28708T

EPI_ISL_466733
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_02888326/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_466735
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03069740/2020
 C241T C1059T C3037T C10277T C14408T A23403G G25563T C27964T

EPI_ISL_466736
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03120111/2020
 A187G C241T C1616T C3037T C14408T A23403G G29425T

EPI_ISL_466737
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03385157/2020
 A187G C241T C1616T C3037T A14142G C14408T A23403G

EPI_ISL_466738
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03386598/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29364T

EPI_ISL_466739
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03405412/2020
 A187G C241T C1616T A1839G C3037T C14408T A23403G

EPI_ISL_466740
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03423088/2020
 A187G C241T C3037T C14408T C14741T A23403G

EPI_ISL_466741
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03452391/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_466742
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03469645/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T

EPI_ISL_466743
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03469815/2020
 C241T C3037T C10507T G12769T C14408T G14500T C14931T C18877T A23403G G25563T G28968T

EPI_ISL_466745
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03470015/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T T27242G G28968T

EPI_ISL_466747
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03470522/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T G28968T

EPI_ISL_466748
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03470614/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T G28968T

EPI_ISL_466749
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03471049/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T

EPI_ISL_466750
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03471188/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T G28968T

EPI_ISL_466751
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03477384/2020
 C241T C3037T T11560C C14408T G19677T A23403G C24904T GGG28881AAC

EPI_ISL_466752
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03489456/2020
 A187G C241T C1616T C3037T A13928G C14408T A23403G

EPI_ISL_466753
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03489776/2020
 A187G C241T C1616T C3037T A13928G C14408T A23403G

EPI_ISL_466754
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03493786/2020
 C241T C3037T G13348T C14408T A20268G A23403G

EPI_ISL_466755
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03907778/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T C29614T

EPI_ISL_466756
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03914944/2020
 C241T C3037T C14408T C15324T A23403G

EPI_ISL_466757
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03917951/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_466758
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03959087/2020
 A187G C241T C1616T C3037T A13928G C14408T A23403G

EPI_ISL_466759
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_03970582/2020
 C241T C1059T C3037T G4559A C10277T C14408T A23403G G25563T C27964T C28146T

EPI_ISL_466760
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_04013424/2020
 C8782T C15720T C17747T A17858G C18060T A24694T C25006T T28144C

EPI_ISL_466761
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_04020783/2020
 C241T C1059T C3037T C14408T C18060T A23403G G25563T C27643A

EPI_ISL_466762
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_04033837/2020
 C8782T C17747T A17858G C18060T T28144C C29585T

EPI_ISL_466763
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_04048819/2020
 C241T C3037T C14408T G19677T A23403G C24904T GGG28881AAC

EPI_ISL_466764
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_04164497/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T

EPI_ISL_466765
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_04286257/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_466766
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_04346268/2020
 C241T C3037T C14408T G17334T G18318T A20268G A23403G C28854T

EPI_ISL_466767
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_04837165/2020
 C6312A G11083T C13730T C23929T C28311T

EPI_ISL_466768
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_04837932/2020
 G1440A G2891A C28868T C29409T

EPI_ISL_466769
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_04869329/2020
 C241T C3037T C14408T G19677T A23403G GGG28881AAC

EPI_ISL_466770
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_04882357/2020
 G1440A G2891A C28868T C29409T

EPI_ISL_466772
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_04930828/2020
 C241T C1059T C2980T C3037T C10277T C14408T A23403G G25009C G25563T C27964T

EPI_ISL_466773
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_04935664/2020
 C241T C1059T C1077T C3037T C10277T C14408T A23403G G25563T C27964T

EPI_ISL_466774
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_04975041/2020
 A187G C241T C1616T C3037T A13928G C14408T A23403G

EPI_ISL_466775
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_05017368/2020
 C241T C3037T G13348T C14408T A20268G A23403G

EPI_ISL_466776
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_05023412/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_466777
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_05075366/2020
 C241T C3037T C3775T C10507T C14408T C14931T C18877T A23403G G25563T

EPI_ISL_466779
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_05075882/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T G29711T

EPI_ISL_466781
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_05076038/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T G28968T

EPI_ISL_466782
 2020-04-xx 2020-06-11
 Canada hCoV-19/Canada/BC_05132390/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_466783
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_05248019/2020
 T493C G1440A G2891A C4668T C29801T

EPI_ISL_466784
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_05256838/2020
 C241T C3037T C14408T C14913T C16178T A20268G A23403G A28911G

EPI_ISL_466785
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_05294838/2020
 C241T C3037T G13348T C14408T A20268G A23403G

EPI_ISL_466787
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_05300317/2020
 C241T C1059T C3037T G4559A C10277T C14408T C16376T A23403G G25563T C27964T

EPI_ISL_466788
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_05333597/2020
 A187G C241T C1616T C3037T C14408T C21622T A23403G

EPI_ISL_466789
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_05740462/2020
 C241T T2077C C3037T C10507T C14408T C14931T C18877T A23403G G25563T

EPI_ISL_466792
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_05941640/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T G28968T

EPI_ISL_466793
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_05941876/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25244T G25563T

EPI_ISL_466794
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_05941974/2020
 C241T C3037T G7798T C10507T C14408T C14931T C18877T A23403G G25563T G28968T

EPI_ISL_466795
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_05942483/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T

EPI_ISL_466796
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_05943217/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T G28968T

EPI_ISL_466800
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_06378958/2020
 C241T C1059T C1077T C3037T C10277T C14408T A23403G G25563T C27964T

EPI_ISL_466802
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_06764319/2020
 G1440A G2891A C7011T C9438T

EPI_ISL_466808
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_06944842/2020
 C241T C3037T C3775T C10507T C14408T C14931T C18877T A23403G G25563T

EPI_ISL_466809
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_06946792/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T

EPI_ISL_466811
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_06975953/2020
 C241T C3037T C14408T G17334T G18318T A20268G A23403G C23577T C28854T

EPI_ISL_466812
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_06998971/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T

EPI_ISL_466815
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_07312838/2020
 C241T C1059T C3037T G6536A C12880T C14408T A23403G G25563T G29553A

EPI_ISL_466820
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_07788742/2020
 C241T C1059T C3037T G6536A C12880T C14408T A23403G G25563T G29553A

EPI_ISL_466829
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_08323846/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T C29415T

EPI_ISL_466873
 2020-04-xx 2020-06-12
 United Kingdom hCoV-19/England/MZ001/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_467305
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_09329927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467306
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_09452317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677T A23403G C24904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467309
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_09978786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467310
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_10063599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467312
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_10111761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6536A C12880T C14408T A23403G G25563T G29553A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467313
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_10111910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6536A C12880T C14408T A23403G G25563T G29553A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467314
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_10589793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17304T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467315
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_10592956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467317
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_11028219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13348T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467318
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_11135150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G G24821T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467320
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_11184415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1385T C8782T T12688C T16276C C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467321
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_11186723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467322
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_11303557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C884T G1397A T5619C G8653T A9437G G11083T T16563C A25980C C27970T T28688C G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467324
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_11637543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467327
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_11656063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17334T G18318T A20268G A23403G C23577T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467329
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_11726488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467330
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_12186719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T G1589A C1616T C3037T C14408T G16245T A23403G A29112T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467331
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_12199086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467332
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_12210980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13348T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467333
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_12246693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A5229G C8782T C17747T A17858G C18060T T28144C C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467334
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_12251717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467335
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_12477112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2980T C3037T C10277T C14408T A23403G G25009C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467336
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_12661418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467337
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_12775269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6536A C12880T C14408T A23403G G25563T G29553A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467338
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_12793935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467339
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_13086747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T A951G C1616T C3037T T8737C C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467340
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_13088259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467341
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_13610520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6536A C12880T C14408T A23403G G25563T G29553A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467342
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_13662361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5717T C8782T T11885A C17747T A17858G C18060T T28144C C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467343
 2020-04-xx 2020-06-12
 Canada hCoV-19/Canada/BC_13675191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467423
 2020-04-xx 2020-06-13
 Canada hCoV-19/Canada/BC_13704688/2020
 C241T C1059T C1663T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_467424
 2020-04-xx 2020-06-13
 Canada hCoV-19/Canada/BC_13705728/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_467425
 2020-04-xx 2020-06-13
 Canada hCoV-19/Canada/BC_13949840/2020
 T6178C C8782T C9714T C17747T A17858G C18060T C25578T T28144C

EPI_ISL_467426
 2020-04-xx 2020-06-13
 Canada hCoV-19/Canada/BC_14260476/2020
 C241T C1059T C3037T G6536A C12880T C14408T A23403G G25563T G29553A

EPI_ISL_467427
 2020-04-xx 2020-06-13
 Canada hCoV-19/Canada/BC_14282914/2020
 C5717T C8782T T11885A C17747T A17858G C18060T T28144C C29585T

EPI_ISL_467428
 2020-04-xx 2020-06-13
 Canada hCoV-19/Canada/BC_14592296/2020
 C5717T C8782T T11885A C17747T A17858G C18060T T28144C C29585T

EPI_ISL_467429
 2020-04-xx 2020-06-13
 Canada hCoV-19/Canada/BC_14592943/2020
 C5717T C8782T T11885A C17747T A17858G C18060T T28144C C29585T

EPI_ISL_468658
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_14667611/2020
 A187G C241T C1616T C1878T C3037T C14408T A23403G A23450G T26879C C29546T

EPI_ISL_468659
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_14727596/2020
 C241T C1059T C3037T G6536A C12880T C14408T A23403G G25563T G29553A

EPI_ISL_468660
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_14739124/2020
 C241T C3037T C9165T C10507T C14408T C14931T C18877T A23403G G25563T

EPI_ISL_468661
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_14763711/2020
 C241T C1059T C3037T C4113T C11916T C14408T G15380T C18998T A23403G G25563T G29540A

EPI_ISL_468664
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_15222281/2020
 C1191T C5717T C8782T C17747T A17858G C18060T T28144C C29585T

EPI_ISL_468665
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_15222496/2020
 C1191T C5717T C8782T C17747T A17858G C18060T T28144C C29585T

EPI_ISL_468666
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_15443411/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_468668
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_15467213/2020
 C5717T C8782T T11885A C17747T A17858G C18060T T28144C C29585T

EPI_ISL_468669
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_15474127/2020
 C5717T C8782T T11885A C17747T A17858G C18060T T28144C C29585T

EPI_ISL_468670
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_15478567/2020
 T4330C C5717T C8782T T11885A C17747T A17858G C18060T T28144C C29585T

EPI_ISL_468671
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_15550440/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_468672
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_15678040/2020
 C5717T C8782T T11885A C17747T A17858G C18060T T28144C C29585T G29742T

EPI_ISL_468673
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_15682745/2020
 C5717T C8782T T11885A C17747T A17858G C18060T T28144C C29585T

EPI_ISL_468674
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_15708725/2020
 C5717T C8782T T11885A C17747T A17858G C18060T T28144C C29585T

EPI_ISL_468675
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_15710616/2020
 C5717T C8782T T11885A C17747T A17858G C18060T T28144C C29585T

EPI_ISL_468676
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_15804748/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T G28968T

EPI_ISL_468677
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_15820631/2020
 A1056C C8782T T9477A C14805T A17448G T23978C G25979T T28144C C28657T C28863T

EPI_ISL_468678
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_15918444/2020
 C241T C3037T G4201T C11956T C14408T A23403G C26527T

EPI_ISL_468679
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_16223737/2020
 C8782T T13273C C17747T A17858G C18060T T28144C C29585T

EPI_ISL_468680
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_16537755/2020
 A187G C241T T838C C1616T C3037T C9778T C14408T A23403G

EPI_ISL_468683
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_16588829/2020
 C241T C3037T C3373A C14408T A23403G G24821T GGG28881AAC

EPI_ISL_468684
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_16839757/2020
 C241T C1059T A1105G C3037T C14408T C14922T A20355G A23403G G25563T C25714T

EPI_ISL_468685
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_16917931/2020
 C5717T C8782T T11885A C17747T A17858G C18060T T28144C C29585T

EPI_ISL_468686
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_16943416/2020
 T6178C C8782T C9714T C12973T C17747T A17858G C18060T C21648T T28144C

EPI_ISL_468687
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_16976214/2020
 A187G C241T C1616T C3037T C14408T G16245T A23403G A29112T

EPI_ISL_468688
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_17080413/2020
 G1470A C3990T C8782T C12119T G14773A C17747T A17858G C18060T T28144C

EPI_ISL_468689
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_17607523/2020
 C5717T C8782T T11885A C17747T A17858G C18060T T28144C C29585T

EPI_ISL_468691
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_17754491/2020
 A187G C241T C1616T C1878T C3037T C12786T C14408T A23403G T26879C C29546T

EPI_ISL_468693
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_17906513/2020
 A1056C C8782T T9477A C14805T A17448G T23978C G25979T T28144C C28657T C28863T

EPI_ISL_468694
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_17943129/2020
 A187G C241T C1616T C3037T C14408T G16245T G20477T A23403G A29112T

EPI_ISL_468695
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_18101737/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G C24381T G25563T G28968T

EPI_ISL_468696
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_18115071/2020
 C241T C3037T G9479T C9693T C10507T C14408T C14931T C15738T C18877T A23403G G25563T G29711T

EPI_ISL_468698
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_18116391/2020
 C241T C3037T C10507T C14408T C14931T C18877T C21767T A23403G G25563T G29711T

EPI_ISL_468699
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_18141519/2020
 C241T C3037T C10507T C12439T C14408T C14931T C18877T A23403G G25244T G25563T

EPI_ISL_468700
 2020-04-xx 2020-06-17
 Canada hCoV-19/Canada/BC_18143554/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25244T G25563T

EPI_ISL_469209
 2020-04-xx 2020-06-18
 Canada hCoV-19/Canada/BC_18173416/2020
 T6178C G8179T C8782T C9714T C17747T A17858G C18060T C21648T T28144C

EPI_ISL_469210
 2020-04-xx 2020-06-18
 Canada hCoV-19/Canada/BC_18604452/2020
 T6178C C8782T C9714T C17747T A17858G C18060T C21648T T28144C

EPI_ISL_469211
 2020-04-xx 2020-06-18
 Canada hCoV-19/Canada/BC_18717764/2020
 C8782T T14837C C17747T A17858G C18060T T28144C C29585T

EPI_ISL_469212
 2020-04-xx 2020-06-18
 Canada hCoV-19/Canada/BC_18839283/2020
 C8782T C12025T C17747T A17858G C18060T T28144C C29585T

EPI_ISL_469213
 2020-04-xx 2020-06-18
 Canada hCoV-19/Canada/BC_19071912/2020
 C241T C3037T G4201T C11956T C14408T A23403G C26527T

EPI_ISL_469214
 2020-04-xx 2020-06-18
 Canada hCoV-19/Canada/BC_19072825/2020
 A187G C241T C1616T C3037T C14408T G16245T A23403G A29112T

EPI_ISL_469215
 2020-04-xx 2020-06-18
 Canada hCoV-19/Canada/BC_19072819/2020
 A187G C241T C1616T C3037T C14408T G16245T A23403G A29112T

EPI_ISL_469216
 2020-04-xx 2020-06-18
 Canada hCoV-19/Canada/BC_19100589/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29364T

EPI_ISL_469218
 2020-04-xx 2020-06-18
 Canada hCoV-19/Canada/BC_19133870/2020
 C5717T C8782T T11885A C17747T A17858G C18060T T28144C C29585T

EPI_ISL_469222
 2020-04-xx 2020-06-18
 Canada hCoV-19/Canada/BC_19677621/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29364T

EPI_ISL_469223
 2020-04-xx 2020-06-18
 Canada hCoV-19/Canada/BC_19803546/2020
 A1123T C8782T T14837C C17747T A17858G C18060T G26257A T28144C C29585T

EPI_ISL_477020
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_19909443/2020
 A187G C241T C1616T C3037T C6675T C14408T G16245T G20477T A23403G A29112T

EPI_ISL_477022
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_20367856/2020
 C8782T G11083T C17747T A17858G C18060T C23854T TT26301AA T28144C

EPI_ISL_477023
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_21355315/2020
 A1123T C8782T T14837C C17747T A17858G C18060T G26257A T28144C C29585T

EPI_ISL_477024
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_21358214/2020
 G443A A1123T C8782T T14837C C17747T A17858G C18060T G26257A T28144C C29585T

EPI_ISL_477029
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_21451231/2020
 C8782T T14837C C17747T A17858G C18060T T28144C C29585T

EPI_ISL_477031
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_22422949/2020
 A187G C241T C1616T G2639A C3037T C14119G C14408T A23403G C29732T

EPI_ISL_477032
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_22502164/2020
 C8782T T14837C C17747T A17858G C18060T T22197C T28144C C29585T

EPI_ISL_477033
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_22510360/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29364T

EPI_ISL_477034
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_22611474/2020
 C241T C1059T C3037T G6536A C7081T C12880T C14408T A23403G G25563T G29553A

EPI_ISL_477035
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_23246810/2020
 C241T C1348T C3037T C3373A C14408T A23403G G24821T GGG28881AAC

EPI_ISL_477036
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_23252816/2020
 C241T C3037T C3373A C14408T A23403G G24821T GGG28881AAC

EPI_ISL_477037
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_23279341/2020
 C241T C3037T C3373A C14408T A23403G G24821T GGG28881AAC

EPI_ISL_477038
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_26060645/2020
 C241T C1059T C3037T C14408T A23403G G25348T G25563T C29364T

EPI_ISL_477064
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_08534834/2020
 C241T C1059T C3037T G6536A C12880T C14408T A23403G G25563T G29553A

EPI_ISL_477076
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_19879538/2020
 C241T C3037T C4227A C10507T C14408T C14931T C18877T A23403G G25563T G28968T

EPI_ISL_477090
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_03990815/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T

EPI_ISL_477091
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_03998412/2020
 A187G C241T C1616T C3037T C14408T A23403G

EPI_ISL_477092
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_04000917/2020
 C241T C3037T C10507T C14408T C14931T C18877T A23403G G25563T

EPI_ISL_477093
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_07905258/2020
 T6178C C8782T C9714T C17747T A17858G C18060T C21648T T28144C

EPI_ISL_477094
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_07905790/2020
 T6178C C8782T C9714T C17747T A17858G C18060T C21648T T28144C

EPI_ISL_477095
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_07911261/2020
 T6178C C8782T C9714T C17747T A17858G C18060T T28144C

EPI_ISL_477096
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_07912118/2020
 T6178C C8782T C9714T C17747T A17858G C18060T T28144C

EPI_ISL_477098
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_07916655/2020
 T6178C C8782T C9714T C17747T A17858G C18060T C21648T T28144C

EPI_ISL_477099
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_07917243/2020
 T6178C C8782T C9714T C17747T A17858G C18060T C21648T G27896A T28144C

EPI_ISL_477100
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_07917795/2020
 C8782T C17747T A17858G C18060T C23854T TT26301AA T28144C

EPI_ISL_477101
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_07920084/2020
 T6178C C8782T C9714T C17747T A17858G C18060T T28144C

EPI_ISL_477102
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_07924910/2020
 T6178C C8782T C9714T C17747T A17858G C18060T T28144C

EPI_ISL_477103
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_07925997/2020
 T6178C C8782T C9714T C17747T A17858G C18060T T28144C

EPI_ISL_477105
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_09009433/2020
 C8782T C17747T A17858G C18060T C23854T TT26301AA T28144C

EPI_ISL_477106
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_09014362/2020
 T6178C C8782T C9714T C17747T A17858G C18060T C21648T T28144C

EPI_ISL_477107
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_09021025/2020
 C8782T C17747T A17858G C18060T C23854T TT26301AA T28144C

EPI_ISL_477108
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_09023420/2020
 C8782T C17747T A17858G C18060T C23854T TT26301AA T28144C

EPI_ISL_477109
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_09025513/2020
 C8782T C17747T A17858G C18060T C23854T TT26301AA T28144C

EPI_ISL_477110
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_09026743/2020
 C8782T C17747T A17858G C18060T C23854T TT26301AA T28144C

EPI_ISL_477111
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_09029034/2020
 C8782T C17747T A17858G C18060T C23854T TT26301AA T28144C

EPI_ISL_477112
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_09035190/2020
 T6178C C8782T C9714T C17747T A17858G C18060T T28144C

EPI_ISL_477113
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_09040534/2020
 C8782T C17747T A17858G C18060T C23854T TT26301AA T28144C

EPI_ISL_477114
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_10600259/2020
 C8782T C17747T A17858G C18060T C23854T TT26301AA G27632T T28144C

EPI_ISL_477115
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_10600634/2020
 C8782T G11083T C17747T A17858G C18060T C23854T TT26301AA T28144C

EPI_ISL_477117
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_10601737/2020
 T6178C C8782T C9714T C17747T A17858G C18060T C21648T T28144C

EPI_ISL_477118
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_10603886/2020
 T6178C C8782T C9714T C17747T A17858G C18060T C21648T T28144C

EPI_ISL_477119
 2020-04-xx 2020-06-28
 Canada hCoV-19/Canada/BC_10616731/2020
 C8782T C17747T A17858G C18060T C23854T TT26301AA T28144C C29666T

EPI_ISL_479676 LC556315
 2020-04-xx 2020-06-15
 Japan TKYE65734_2020
 ATTAAAGGTTTAT1- C241T C313T C3037T C14408T A23403G GGG28881AAC G28975T

EPI_ISL_479677 LC556316
 2020-04-xx 2020-06-15
 Japan TKYE610419_2020
 C241T C313T C3037T C6190T C14408T C15951T A23403G G25677T GGG28881AAC

EPI_ISL_479678 LC556317
 2020-04-xx 2020-06-15
 Japan TKYE610497_2020
 ATTA1- C241T C313T C3037T C14408T C23185T A23403G GGG28881AAC G29764T

EPI_ISL_479679 LC556318
 2020-04-xx 2020-06-15
 Japan TKYE610504_2020
 ATTAAAGGTTTA1- C241T C313T C3037T C14408T C23185T A23403G GGG28881AAC G29764T

EPI_ISL_479680 LC556319
 2020-04-xx 2020-06-15
 Japan TKYE610510_2020
 ATTAAAGGTT1- C241T C313T C3037T C14408T C17245T C23185T A23403G GGG28881AAC G29764T

EPI_ISL_479681 LC556320
 2020-04-xx 2020-06-15
 Japan TKYE610670_2020
 C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_479682 LC556321
 2020-04-xx 2020-06-15
 Japan TKYE610850_2020
 ATTAAAG1- C241T C313T C3037T C14408T T19221C A23403G GGG28881AAC C29550T

EPI_ISL_479683 LC556322
 2020-04-xx 2020-06-15
 Japan TKYVE11964_2020
 ATTAAAGGTTTAT1- C241T C313T C3037T C14408T G20134T A23403G C24621A G25563C G28178T G28300T GGG28881AAC

EPI_ISL_479684 LC556323
 2020-04-xx 2020-06-15
 Japan TKYVE12492_2020
 ATTAAAGGTTTATAC1- C241T C313T T2824C C3037T C12374T C14408T A23403G C28253T GGG28881AAC

EPI_ISL_479685 LC556324 LC565413
 2020-04-xx 2020-06-15
 Japan TKYE613173_2020
 ATTAAAGGTTTA1- C241T C313T C3037T C14408T G18756T A23403G GGG28881AAC G28975T

EPI_ISL_480190
 2020-04-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTA1- C241T C313T C3037T C14408T A23403G GGG28881AAC G28975T G29090T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480191
 2020-04-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC G28975T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_480192
 2020-04-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC G28975T TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_480193
 2020-04-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC G28975T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480194
 2020-04-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C241T C313T C3037T C14408T A23403G GGG28881AAC G28975T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_480195
 2020-04-xx 2020-07-01
 Japan hCoV-19/Japan/PG-0538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C14408T G19872T A23403G GGG28881AAC G28975T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_486890 LC565407
 2020-04-xx 2020-06-30
 Japan TKYE611820_2020
 ATTAAAGGTTT1- C241T C313T C3037T C14408T G21600T A23403G GGG28881AAC

EPI_ISL_486891 LC565408
 2020-04-xx 2020-06-30
 Japan TKYE611821_2020
 ATTAAAGGTTTA1- C241T C313T C3037T C14408T G21600T A23403G GGG28881AAC

EPI_ISL_486892 LC565409
 2020-04-xx 2020-06-30
 Japan TKYV12527_2020
 ATTAAAGGTTTA1- C241T C313T C3037T C14408T C16338T A23403G GGG28881AAC G28975T

EPI_ISL_486893 LC565410
 2020-04-xx 2020-06-30
 Japan TKYE612251_2020
 ATTAAAGG1- C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_486894 LC565411
 2020-04-xx 2020-06-30
 Japan TKYV12689_2020
 ATTAAAGGTTTA1- C241T C313T C3037T C6190T C14408T C21846T A23403G C25521T GGG28881AAC

EPI_ISL_486895 LC565412
 2020-04-xx 2020-06-30
 Japan TKYE613035_2020
 ATTAAAGGTTTATAC1- C241T C313T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_486896 LC565414
 2020-04-xx 2020-06-30
 Japan TKYE613175_2020
 ATTAAAGGTTT1- C241T C313T C3037T C14408T G18756T A23403G C24106T GGG28881AAC G28975T

EPI_ISL_498518
 2020-04-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10138T C13667T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498523
 2020-04-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10138T C13667T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548781
 2020-04-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01158/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2416T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548931
 2020-04-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1912T C3037T C6270T T10372C A12124G C12885T C14408T G19656K A23403G A26927G G28077T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

LC572067
 2020-04-xx 2020-07-29
 Japan TKYE610513_2020
 ATTA1- C241T C313T C3037T C14408T C23185T A23403G GGG28881AAC G29764T

MT308702
 2020-04-xx 2020-04-07
 United States SARS-CoV-2/human/USA/UNC_200191/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT308703
 2020-04-xx 2020-04-07
 United States SARS-CoV-2/human/USA/UNC_200181/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT308704
 2020-04-xx 2020-04-07
 United States SARS-CoV-2/human/USA/UNC_200189/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C27964T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528598
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200217/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528599
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200219/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528601
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200241/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T A1317G C3037T C14408T C20031T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528602
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200242/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T T4885C C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528603
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200243/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T C9430T A13962G T18736C T23677C C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528604
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200244/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528605
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200245/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT528606
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200247/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C8782T T14568C C17747T A17858G C18060T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528608
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200255/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T490A G1413T C3177T C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT528609
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200256/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G G25563T C29708T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528610
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200259/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T C9891T C15960T G17509T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528612
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200271/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T C16887T G21974C G23224T A23403G G25563T G26233T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT528613
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200272/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T C14649T A23403G G25563T C26625T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528614
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200278/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1917T C3037T C7945T C14408T G20005A A22036G A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528615
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200290/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A20755C A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT528616
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200300/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3589T C8782T C17747T A17858G C18060T T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528617
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200306/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T T29847G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528618
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200310/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C11653T C14408T T18471C A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528622
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200323/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3589T C8782T C17747T A17858G C18060T T27408C T28144C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528625
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200331/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT528626
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200330/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A C3177T C8782T C9430T A13962G T18736C T23677C C24034T T26729C C27635T G28077C T28144C A29700G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT528628
 2020-04-xx 2020-05-27
 United States SARS-CoV-2/human/USA/UNC_200253/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T490A G1413T C3177T C8782T C15960T T18736C G19684T C24034T T26729C C27635T G28077C T28144C A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT551605
 2020-04-xx 2020-06-02
 United States SARS-CoV-2/human/USA/UNC_200460/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T G21974C G23224T A23403G G25563T G26233T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT551606
 2020-04-xx 2020-06-02
 United States SARS-CoV-2/human/USA/UNC_200467/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T C21846T G21974C G23224T A23403G G25563T G26233T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT551607
 2020-04-xx 2020-06-02
 United States SARS-CoV-2/human/USA/UNC_200468/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T C21846T G21974C G23224T A23403G G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT551608
 2020-04-xx 2020-06-02
 United States SARS-CoV-2/human/USA/UNC_200486/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T G21974C G23224T A23403G G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT557568
 2020-04-xx 2020-06-02
 United States SARS-CoV-2/human/USA/UNC_200429/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A361G C8782T C18929T G20670A G22468T T25559G T28144C G28380T G28878A G29742A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT557569
 2020-04-xx 2020-06-02
 United States SARS-CoV-2/human/USA/UNC_200445/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T G21974C G23224T A23403G G25563T G26233T TA26491CT T26496C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT557570
 2020-04-xx 2020-06-02
 United States SARS-CoV-2/human/USA/UNC_200446/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T G21974C G23224T A23403G T24948C G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT559800
 2020-04-xx 2020-06-03
 United States SARS-CoV-2/human/USA/UNC_200395_2020/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C12513T C14408T G21974C G23224T A23403G G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT559801
 2020-04-xx 2020-06-03
 United States SARS-CoV-2/human/USA/UNC_200399_2020/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2416T C3037T T12112C C14408T G21974C G23224T A23403G G25563T A26126T G26233T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT559802
 2020-04-xx 2020-06-03
 United States SARS-CoV-2/human/USA/UNC_200401_2020/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C A13522G C14408T G21974C G23224T A23403G T24948C G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT559803
 2020-04-xx 2020-06-03
 United States SARS-CoV-2/human/USA/UNC_200409_2020/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T G21974C G23224T A23403G G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT565495
 2020-04-xx 2020-06-04
 United States SARS-CoV-2/human/USA/UNC_200414_2020/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T G21974C G23224T A23403G G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT565496
 2020-04-xx 2020-06-04
 United States SARS-CoV-2/human/USA/UNC_200407_2020/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A10248G C10319T C12525T C14408T A23403G G25563T C27964T GAGTACGATCGAGT29745- AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

MT565497
 2020-04-xx 2020-06-04
 United States SARS-CoV-2/human/USA/UNC_200428_2020/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C10319T C11020T C11379T C12525T C14408T A23403G G25563T C27964T GAGTACGATCGAGT29745- AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

MT565498
 2020-04-xx 2020-06-04
 United States SARS-CoV-2/human/USA/UNC_200313_2020/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C10319T C12525T C14408T A23403G G25563T C27964T GAGTACGATCGAGT29745- AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

MT565499
 2020-04-xx 2020-06-04
 United States SARS-CoV-2/human/USA/UNC_200265_2020/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C5512T C10319T C12525T C14408T A23403G G25563T C27964T GAGTACGATCGAGT29745- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT951973
 2020-04-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0610/2020
 ATTAAAGGTT1- C241T C313T C3037T C14408T A23403G GGG28881AAC

MT951974
 2020-04-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0612/2020
 A1- C241T C1059T C3037T A3192G C11916T C14408T C18199T C18998T A23403G G25563T G25947C T28074C G28881T G29540A

MT951975
 2020-04-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0613/2020
 ATTAAAGGTTTATACCT1- A38R T490A C3177T G5554T C6040T C8782T G12478A T18736C A23370G C24034T T26729C G28077C T28144C C28896G A29700G AAAAAAAAAAAAAAAAAAAAAAA29881-

MT951976
 2020-04-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0614/2020
 C241T C1059T C3037T G12373T C14408T G17590A A23403G G25563T C26625T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT951977
 2020-04-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T G410T C1059T C3037T C9198T C14408T A23403G G25563T C28603T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT951978
 2020-04-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C504A C1059T C3037T C4246T C14408T A23403G G25563T G29745T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

MT951980
 2020-04-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C1917T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

MT952603
 2020-04-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0622/2020
 ATTAAAGGTTT1- C241T C1059T G1944A C3037T A12026T C14408T A23403G G25563T C28391T C29722T C29774T

MT952604
 2020-04-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A652T C1059T C3037T A10904G C14408T C20371A A23403G G25563T C27688T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

MT952605
 2020-04-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0660/2020
 ATTAAAGGTTT1- C241T A652T C1059T C3037T C14408T A23403G G25563T C27688T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

MT952607
 2020-04-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A652T C1059T C3037T C14408T A23403G G25563T C27688T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT952608
 2020-04-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0664/2020
 AT1- C241T C1059T C3037T C11916T C12119T C14408T C18998T A23403G A25121G G25563T G25947C G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT952609
 2020-04-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0665/2020
 ATTAAAGGTTTA1- A38R C241T C1059T C3037T C14408T A23403G G25563T

MT952610
 2020-04-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0666/2020
 ATTAA1- C241T C1059T C3037T C3990T C11074T C14408T A23403G T23602C G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_439337
 2020-05-01 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3846/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_439350
 2020-05-01 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3872/2020
 C241T C313T C450T C3037T G10073A C13684T C14408T T22861C A23403G G23868T G28395A T28723C GGG28881AAC

EPI_ISL_439351
 2020-05-01 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3873/2020
 C241T C3037T T5977C C14408T A20268G A23403G C27110T C28854T

EPI_ISL_439353
 2020-05-01 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3882/2020
 C241T C3037T C14408T C18788T T19839C A23403G A24862G GGG28881AAC

EPI_ISL_439354
 2020-05-01 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3887/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_439355
 2020-05-01 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3890/2020
 C241T T2987C C3037T A3215G C14408T C14724T G15438T A20268G A23403G

EPI_ISL_439357
 2020-05-01 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3892/2020
 C241T C3037T G8863T C14408T C18788T T19839C A23403G C24444T A24862G GGG28881AAC

EPI_ISL_439358
 2020-05-01 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3894/2020
 C241T C3037T C6070T A8032G C14408T C18788T T19839C A23403G A24862G GGG28881AAC

EPI_ISL_439359
 2020-05-01 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3895/2020
 C241T C3037T A8032G C14408T C18788T T19839C A23403G A24862G GGG28881AAC

EPI_ISL_439360
 2020-05-01 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3897/2020
 C241T C3037T A8032G G14274T C14408T C18788T T19839C A23403G A24862G GGG28881AAC

EPI_ISL_439361
 2020-05-01 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3899/2020
 C7423T C7869T C16750T

EPI_ISL_439363
 2020-05-01 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3903/2020
 C7423T C7869T

EPI_ISL_439364
 2020-05-01 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3906/2020
 C241T C3037T C14408T A23403G C25433T

EPI_ISL_439365
 2020-05-01 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3914/2020
 C241T C3037T C14408T A20268G A23403G G29734C

EPI_ISL_444023
 2020-05-01 2020-05-13
 United States hCoV-19/USA/CA-CZB-1089/2020
 ATTAAAGGTTT1- C6363T C9979T T24628C C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_444024
 2020-05-01 2020-05-13
 United States hCoV-19/USA/CA-CZB-1090/2020
 G491A A14940G

EPI_ISL_444026
 2020-05-01 2020-05-13
 United States hCoV-19/USA/CA-CZB-1092/2020
 ATTAAAGGTTTATACCT1- G491A A14940G T15771K AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_447978
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD1F2/2020
 C241T C3037T C4002T T4066C A9650G G10097A C13536T C14408T A23403G C23731T A25948G GGG28881AAC T29288C

EPI_ISL_447994
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD6A8/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G C23533T G25429T

EPI_ISL_447995
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD6B7/2020
 G677A ATG1605- A1904G C4940A C5826T C8090T C10789T C28060T

EPI_ISL_447997
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD6D5/2020
 C241T C1170T C3037T C5907T C11379T C14408T A23403G GGG28881AAC

EPI_ISL_447998
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD6F3/2020
 C241T C3037T C14408T A23403G AG28877TC GGG28881AAC

EPI_ISL_447999
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD70F/2020
 C241T C3037T C3817T C14408T A23403G G28086T GGG28881AAC

EPI_ISL_448000
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD71E/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_448002
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD74B/2020
 C241T C3037T C14408T A23403G G23868T G25429T GTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTC27703-

EPI_ISL_448007
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD7A5/2020
 C241T G1820A C3037T C14408T A23403G G28514T G29810A

EPI_ISL_448010
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD7D2/2020
 C241T C1102T C3037T C8727T C14408T A23403G C28087T GGG28881AAC

EPI_ISL_448015
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD82A/2020
 C241T C3037T T13902C C14408T A23403G GGG28881AAC

EPI_ISL_448017
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD866/2020
 C241T C3037T C14408T A23403G G28086T GGG28881AAC

EPI_ISL_448021
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD8DF/2020
 C241T C3037T C9438T G10262A C14408T T19839C G20060T C22995T A23403G C25831T A27669G GGG28881AAC

EPI_ISL_448023
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD909/2020
 C241T G1820A C3037T C14408T A23403G G28514T G29810A

EPI_ISL_448033
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1ADAF7/2020
 C241T C3037T C14408T A16607G A23403G GGG28881AAC

EPI_ISL_448035
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1ADB21/2020
 C241T C2459T C3037T C9778T C14408T A23403G G26314A GGG28881AAC

EPI_ISL_448056
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AEBB7/2020
 C241T C2918T C3037T C14408T A23403G G26314A GGG28881AAC

EPI_ISL_448363
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9D60/2020
 ATTAAAGGTTTA1- C241T C1713A C2940T C3037T C9438T C14408T A23403G

EPI_ISL_448372
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9E30/2020
 AT1- C176T C241T C2523Y A2775G C2940T C3037T G8137T C14408T C16289T C21648T A23403G

EPI_ISL_448375
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9E7C/2020
 ATTA1- C1314T G6981R G11083T C14805T G15372T T17247C G26144T T27451A C29171T

EPI_ISL_448391
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110B74/2020
 C241T G2393A C3037T C14408T C16289T T18858C A23403G G25429T

EPI_ISL_448395
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110C26/2020
 G431A ATG1605- G3338T G8264T G13348T T14817C C20270T T23287G A27488T A29683T G29751C

EPI_ISL_448397
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110C44/2020
 C241T C3037T C14408T C22458T A23403G C25350T

EPI_ISL_448398
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110C62/2020
 C241T A2641G C3037T C3622T C12049T C14408T A23403G C25844T C28087T GGG28881AAC

EPI_ISL_448399
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110C71/2020
 C241T C3037T C4002T G10097A G12514T C13536T C14408T A23403G A23524C C23731T GGG28881AAC

EPI_ISL_448401
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110C9F/2020
 C241T C1862T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_448404
 2020-05-01 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110CCC/2020
 C241T C3037T G7143A C10078T G11083T C14408T A23403G G27281T GGG28881AAC C29284T G29405A

EPI_ISL_451202
 2020-05-01 2020-05-23
 Uganda hCoV-19/Uganda/UG020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C4886T C14408T G15535T A23403G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_451205
 2020-05-01 2020-05-24
 United States hCoV-19/USA/LA-EVTL044/2020
 A4T C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451206
 2020-05-01 2020-05-24
 United States hCoV-19/USA/LA-EVTL045/2020
 C241T C1059T C3037T G12079A C14408T A23403G G25563T A27784G C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451207
 2020-05-01 2020-05-24
 United States hCoV-19/USA/LA-EVTL046/2020
 C241T C1059T C3037T C14408T A18616G C22550T A23403G G25563T C27964T C29686G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451208
 2020-05-01 2020-05-24
 United States hCoV-19/USA/LA-EVTL047/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451209
 2020-05-01 2020-05-24
 United States hCoV-19/USA/LA-EVTL048/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T C29203T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451210
 2020-05-01 2020-05-24
 United States hCoV-19/USA/LA-EVTL049/2020
 C241T C1059T C3037T C14408T C21637T C22550T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451240
 2020-05-01 2020-05-24
 United States hCoV-19/USA/LA-EVTL079/2020
 C241T C1059T C3037T G12079A C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451241
 2020-05-01 2020-05-24
 United States hCoV-19/USA/LA-EVTL080/2020
 C241T C1059T C3037T C14408T C22550T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_453534
 2020-05-01 2020-05-27
 United Kingdom hCoV-19/England/NORT-290D39/2020
 C241T C3037T G3053T T3100G G10097A T12628C C14408T A23403G C23731T G25947T GGG28881AAC

EPI_ISL_454221
 2020-05-01 2020-05-28
 Portugal hCoV-19/Portugal/PT0497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_455659
 2020-05-01 2020-06-01
 India hCoV-19/India/S30/2020
 C241T C1710T C3037T C6040T C14408T A23403G C29197T

EPI_ISL_455660
 2020-05-01 2020-06-01
 India hCoV-19/India/S31/2020
 C241T G1589A A2368T C3037T C4893T C6541T C13730T C14408T A23403G

EPI_ISL_455661
 2020-05-01 2020-06-01
 India hCoV-19/India/S32/2020
 C241T C2910T C3037T T8191G C14408T C21707T A23403G

EPI_ISL_455665
 2020-05-01 2020-06-01
 India hCoV-19/India/S44/2020
 C241T C1909T C3037T C13730T C14408T G20991T A23403G C27684T

EPI_ISL_455666
 2020-05-01 2020-06-01
 India hCoV-19/India/S45/2020
 C241T C3037T C14408T G15451A G22343A A23403G A28174T

EPI_ISL_457251
 2020-05-01 2020-06-02
 United Kingdom hCoV-19/England/EXET-136B78/2020
 C241T C3037T C14408T A23403G C25350T

EPI_ISL_457383 LR821829
 2020-05-01 2020-06-02
 United Kingdom NORW-EAE3F
 C241T C3037T C10626T C14408T A23403G G28077T GGG28881AAC

EPI_ISL_457412 LR814007
 2020-05-01 2020-06-02
 United Kingdom NORW-EB26F
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2940T C3037T C5170T C14408T C17766T C22376T A23403G

EPI_ISL_457416 LR814039
 2020-05-01 2020-06-02
 United Kingdom NORW-EB2F6
 ATTA1- C241T C3037T C4755Y C8770Y C10626T C14408T A23403G G28077T GGG28881AAC

EPI_ISL_457423 LR814042
 2020-05-01 2020-06-02
 United Kingdom NORW-EB37B
 ATTAAAGGTTTATAC1- C241T C3037T C7006T C14408T C18526T C19421T A23403G C23758T G25429T C25916T

EPI_ISL_457426 LR813997
 2020-05-01 2020-06-02
 United Kingdom NORW-EB3C6
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T18947Y T19839C A23403G GGG28881AAC

EPI_ISL_457427 LR814011
 2020-05-01 2020-06-02
 United Kingdom NORW-EB3D5
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T G1820A C3037T C14408T A23403G G28514T G29810A

EPI_ISL_457436 LR814208
 2020-05-01 2020-06-02
 United Kingdom NORW-EB4B4
 ATTAAAGGTTTATACC1- C241T G1820A C3037T C14408T C21637T A23403G G28514T

EPI_ISL_457438 LR822001
 2020-05-01 2020-06-02
 United Kingdom NORW-EB4F0
 ATTA1- C241T C3037T T4579A C5175T C14408T T18552C A23403G C25521T G27877T G28514T

EPI_ISL_457440 LR814223
 2020-05-01 2020-06-02
 United Kingdom NORW-EB52A
 C241T G1069A C3037T G6368A C14408T A23403G GGG28881AAC

EPI_ISL_457441 LR821900
 2020-05-01 2020-06-02
 United Kingdom NORW-EB539
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G1820A C3037T C6541T C14408T G22899K A23403G C26204Y GGG28881AAC A29242G

EPI_ISL_457442 LR814132
 2020-05-01 2020-06-02
 United Kingdom NORW-EB548
 AT1- T1209C ATG1605- C8917T C10543T C16349T C17898T C27128T

EPI_ISL_457445 LR814126
 2020-05-01 2020-06-02
 United Kingdom NORW-EB5C0
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2940T C3037T C14408T C19263T A23403G

EPI_ISL_457448 LR821957
 2020-05-01 2020-06-02
 United Kingdom NORW-EB609
 ATTAAAGGT1- C241T C3037T C10626T C14408T A23403G G28077T GGG28881AAC

EPI_ISL_457592
 2020-05-01 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C2477/2020
 C241T C3037T G3206T A6526G G10097A C11750T C13381T C14408T A23403G C23731T A23992T G28580T GGG28881AAC

EPI_ISL_457594
 2020-05-01 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C27F6/2020
 C241T C3037T G10324T C14408T A23403G GGG28881AAC

EPI_ISL_457605
 2020-05-01 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C469D/2020
 C241T C2940T C3037T C10341T C14408T C19524T T21467C A23403G T28693C

EPI_ISL_457617
 2020-05-01 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C7339/2020
 C241T C3037T C14408T A23403G C25603T GGG28881AAC

EPI_ISL_457633
 2020-05-01 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C8A33/2020
 C241T C3037T G10097A C11750T C13381T C14408T A23403G C23731T A23992T C25350T G28580T GGG28881AAC

EPI_ISL_457636
 2020-05-01 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C95B9/2020
 C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC

EPI_ISL_457660
 2020-05-01 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CDBE0/2020
 C241T C1059T C3037T A9634T C14408T A23403G G25563T G29579T

EPI_ISL_458116
 2020-05-01 2020-06-03
 Oman hCoV-19/Oman/205033013/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25C C241T C3037T G10265A C14408T C16293T A23403G G23426T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_458118
 2020-05-01 2020-06-03
 Oman hCoV-19/Oman/205033010/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T A6876G G10265A C14408T C16293T A23403G GGG28881AAC G29747T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_459914
 2020-05-01 2020-06-05
 India hCoV-19/India/MaxCov0012_CSIR-IGIB/2020
 C241T C313T G347R C1707Y C3037T C9384Y G10958K G11221K C13730Y C14408Y A16359R G19193K G22049R G22081R A23403R C27389T C28311Y G28712R GGG28881AAC T28952Y

EPI_ISL_459943
 2020-05-01 2020-06-05
 India hCoV-19/India/MaxCov0041_CSIR-IGIB/2020
 C1707Y C6310M C6312A G11083T G12685K C13730T A15435R G19469A G19962K C20117Y C21327M C23929T T24622Y C28311T

EPI_ISL_460835
 2020-05-01 2020-06-06
 Netherlands hCoV-19/Netherlands/Flevoland_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T12430C T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460944
 2020-05-01 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T8166C C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461791
 2020-05-01 2020-06-06
 United Kingdom hCoV-19/England/NORT-285423/2020
 C241T C3037T C14408T A20268G G22225T A23403G

EPI_ISL_462025
 2020-05-01 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C6886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462047
 2020-05-01 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CAF05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18803T C21614T A23403G C26681T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462059
 2020-05-01 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CCD54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6526G G10097A C11750T C13381T C14408T A23403G C23731T A23992T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_463444 MT642246
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S954/2020
 ATTAAAG1- C241T C3037T C14408T C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463446 MT642361
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S956/2020
 ATTAAAGGTTT1- C8782T G15406A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463449 MT642394
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S959/2020
 AT1- C8782T C17010T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463450 MT642259
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S960/2020
 AT1- G1401A C8782T T13438C T16863C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463451 MT642421
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S961/2020
 AT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463452 MT642130
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S962/2020
 ATTAAAGGTTTAT1- C241T C3037T C8407T C14408T C17676T T19839C A23403G GGG28881AAC G29000T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463453 MT642374
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S963/2020
 ATTAAAGGTTTAT1- C241T C3037T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463454 MT642309
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S964/2020
 ATTAAAGGTT1- C241T C3037T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463455 MT642351
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S965/2020
 ATT1- C241T C3037T C14408T G21232A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463457 MT642301
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S967/2020
 AT1- C241T C1059T C3037T C11833T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463458 MT642413
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S968/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463459 MT642384
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S969/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463460 MT642082
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S970/2020
 AT1- C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463461 MT642191
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S971/2020
 AT1- C241T C3037T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463462 MT642149
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S972/2020
 C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463463 MT642162
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S973/2020
 AT1- C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463464 MT642339
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S974/2020
 ATTAAAG1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463465 MT642222
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S975/2020
 AT1- C8782T C17747T A17858G C18060T T21745C C24381T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463467
 2020-05-01 2020-06-10
 United States hCoV-19/USA/WA-S977/2020
 AT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_463513 MT642175
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1023/2020
 ATTAAAGGTT1- G1401A C1403T C8782T C17747T A17858G C18060T A19308G G21724C A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463514 MT642113
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1024/2020
 AT1- G1401A C8782T C17747T A17858G C18060T T18843C A19308G G20002T A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463515 MT642329
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1025/2020
 ATTAAAGGTTTAT1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_463517 MT642336
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1027/2020
 ATTAAAGGTTTAT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463519 MT642276
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1029/2020
 ATT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463520 MT642139
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1030/2020
 AT1- G1401A C8782T C10834T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_463521 MT642178
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1031/2020
 ATTAAAGGTTTAT1- C241T C3037T C3990T A5538T C14408T G16813A A23403G T25783C C26022T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463522 MT642083
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1032/2020
 AT1- G1401A A5533G C8782T C17747T A17858G C18060T A19308G C19391T C21304T C21575T A24670G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463523 MT642426
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1033/2020
 AT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463524 MT642337
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1034/2020
 ATTAAAG1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463525 MT642248
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1035/2020
 AT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463542 MT642177
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1052/2020
 ATT1- C8782T G11417T G15406A C17010T C17747T A17858G C18060T T22291C G28109T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463543 MT642200
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1053/2020
 AT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_463585 MT642338
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1095/2020
 ATTAAAGGTTTAT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463586 MT642171
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1096/2020
 AT1- G1401A C8782T C17747T A17858G C18060T A19308G C26313T A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463587 MT642182
 2020-05-01 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1097/2020
 AT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_465510
 2020-05-01 2020-06-11
 United Kingdom hCoV-19/England/20188064104/2020
 C241T C3037T G5008T C14408T C15240Y C18060T G19072T T21527C G21786T A23403G C25006T C27945A C28102T GGG28881AAC

EPI_ISL_465525
 2020-05-01 2020-06-11
 United Kingdom hCoV-19/England/20189019804/2020
 C241T C3037T A5855G C14408T C15540T C18110T C18115T A23403G GGG28881AAC

EPI_ISL_465531
 2020-05-01 2020-06-11
 United Kingdom hCoV-19/England/20189046701/2020
 C241T C842T C3037T G6589R C14408T C17999T A19736W A23403G C27881T GGG28881AAC G29711R

EPI_ISL_465533
 2020-05-01 2020-06-11
 United Kingdom hCoV-19/England/20189050701/2020
 C241T C2363Y C3037T A5855G C10340Y C14408T C18110T C18115T A23403G GGG28881AAC

EPI_ISL_465534
 2020-05-01 2020-06-11
 United Kingdom hCoV-19/England/20189051801/2020
 C241T C3037T A5855G C14408T C18110T C18115T T19556Y A23403G GGG28881AAC

EPI_ISL_465574
 2020-05-01 2020-06-11
 United Kingdom hCoV-19/England/20189176701/2020
 C241T A2480R C2508Y C2558Y C3037T G3564K G11093C C13430T C14408T C16667Y C19524Y G21724T T22378C C22480M G22899K A23403G G26824K GGG28881AAC

EPI_ISL_465587
 2020-05-01 2020-06-11
 United Kingdom hCoV-19/England/20190056501/2020
 C241T G1914R C3037T C8078Y C13358Y C14408T T16456Y C17135Y C21639T A23403G

EPI_ISL_465589
 2020-05-01 2020-06-11
 United Kingdom hCoV-19/England/20190056901/2020
 C241T C3037T C13548T C14408T A23403G T25663Y T28244C GGG28881AAC

EPI_ISL_465602
 2020-05-01 2020-06-11
 United Kingdom hCoV-19/England/20192085601/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_468429 MT628163
 2020-05-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1477/2020
 C241T C379A C1059T C3037T T9440A C13721Y C14408T A23403G G25012A G25563T

EPI_ISL_468430 MT628164
 2020-05-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1478/2020
 C241T C379A C1059T C3037T T9440A C14408T A23403G G25012A G25563T

EPI_ISL_468431 MT628165
 2020-05-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C379A C1059T C3037T T9440A C14408T C16375Y G17523K G20240R G20275K A23403G G25012A G25563T C27741Y C28253Y TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_468432 MT628166
 2020-05-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1481/2020
 C241T C379A C1059T C3037T T9440A C14408T A23403G G25012A G25563T

EPI_ISL_468435 MT628169
 2020-05-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1484/2020
 C241T C379A C1059T C3037T T9440A C14408T A23403G G25012A G25563T C28926T

EPI_ISL_468476 MT628203
 2020-05-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1531/2020
 ATTAAA1- C241T C379A C1059T C3037T C10537T C14408T C20611Y A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468550 MT628273
 2020-05-01 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T A6366G C11916T C14408T C18998T A23403G G25563T G25947C CCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAG27688- G29540A G29747T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_468758
 2020-05-01 2020-06-17
 Chile hCoV-19/Chile/Copiapo-00063/2020
 C241T C3037T C14408T C15720T A23403G GGG28881AAC

EPI_ISL_468759
 2020-05-01 2020-06-17
 Chile hCoV-19/Chile/Copiapo-00064/2020
 C241T C3037T C14408T C15720T A23403G GGG28881AAC

EPI_ISL_469287
 2020-05-01 2020-06-18
 Japan hCoV-19/Japan/Donner29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C11747T C12068T C14408T C23077T A23403G G28817T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469288
 2020-05-01 2020-06-18
 Japan hCoV-19/Japan/Donner30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T C13335T C14408T A23403G GGGG28881AACK G29764T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469848
 2020-05-01 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-100EE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C17004T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469866
 2020-05-01 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-100CB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C17004T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469884
 2020-05-01 2020-06-18
 United Kingdom hCoV-19/Northern Ireland/NIRE-100DDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9967T A10323G C14408T T20478C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470790
 2020-05-01 2020-06-19
 United States hCoV-19/USA/MN-MDH-1110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_471835
 2020-05-01 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20814/2020
 C241T C3037T C14408T C21621T A23403G C25665Y G28325T

EPI_ISL_472408
 2020-05-01 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111DE6/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC

EPI_ISL_473871
 2020-05-01 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5941/2020
 C241T C3037T C10798A C13862T C14408T A23403G G24821T G28460T C28836T

EPI_ISL_473986
 2020-05-01 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163714/2020
 ATTAAAGGTTTATACC1- C241T C3037T G6981T C14408T C14786T T19521C A23403G G23868T G28703A GGG28881AAC

EPI_ISL_476105 LR824512 LR861057
 2020-05-01 2020-06-25
 Switzerland 140055
 C241T C3037T G5037R A12061R C14408T C20594T C22347V T22391Y T22516W A23403G G23624R C24863Y G25489T GGG28881AAC A29860R

EPI_ISL_476106 LR824508 LR861073
 2020-05-01 2020-06-25
 Switzerland 140056
 C241T C313T C3037T C14408T A18861T G19518R A19548R C21648Y C22347S G22403S C22448Y T22516W A23403G GGG28881AAC G29864K

EPI_ISL_476737
 2020-05-01 2020-06-25
 United States hCoV-19/USA/MN-MDH-1152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_476996
 2020-05-01 2020-06-27
 Belgium hCoV-19/Belgium/rega-0501480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C4002T G10097A C13536T C14408T G18266T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477169 MT786438
 2020-05-01 2020-06-29
 Georgia SARS-CoV-2/human/GEO/Tb-7851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C1380T G1397A T5278G C11003T G11083T A21647G G23824T T28688C G28878T G29742T T29867C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872G

EPI_ISL_477648 MT679172
 2020-05-01 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T

EPI_ISL_477649 MT679173
 2020-05-01 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0433/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T

EPI_ISL_477784
 2020-05-01 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1AD848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T C4002T G10097A C13536T C14184T C14408T C21058T A22243C A23403G C23731T C24378T TTTC27694- GAAAGACAGAATGATT27746- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479093
 2020-05-01 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1DE9/2020
 C241T C3037T C14408T G21624T A23403G GGG28881AAC

EPI_ISL_479100
 2020-05-01 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1EE6/2020
 C241T C3037T G3259T C10450T C14408T G21123T A23403G GGG28881AAC

EPI_ISL_479104
 2020-05-01 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1FC5/2020
 C241T C3037T C6723T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_479108
 2020-05-01 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2049/2020
 C241T C3037T C3044T T10992C C14408T C19488T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_479111
 2020-05-01 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2085/2020
 C241T A610G C3037T T11164G C14408T G21538T G22332A A23403G G25429T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_479511
 2020-05-01 2020-06-30
 India hCoV-19/India/NIV-18728/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5025T C5700A C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480253
 2020-05-01 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV155/2020
 C241T C3037T C12809T C14408T A23403G GGG28881AAC

EPI_ISL_480411 MT772578
 2020-05-01 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C5183T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480412 MT772579
 2020-05-01 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C5183T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480413 MT772580
 2020-05-01 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16017T C16616T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481380 MT786442
 2020-05-01 2020-07-03
 Georgia SARS-CoV-2/human/GEO/Tb-7856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGAT1- C241T C1059T G2381T C3037T C14408T G17679T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481907
 2020-05-01 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T C15540T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482084
 2020-05-01 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599E52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16900T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482114
 2020-05-01 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599EAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_482395
 2020-05-01 2020-07-03
 United States hCoV-19/USA/OR-PROV-132/2020
 C241T C1059T C3037T C14408T C18086T A23403G G25563T A26528T A28492T

EPI_ISL_482396
 2020-05-01 2020-07-03
 United States hCoV-19/USA/OR-PROV-133/2020
 C241T C1059T C3037T C14408T C18086T A23403G G25563T A26528T A28492T

EPI_ISL_482397
 2020-05-01 2020-07-03
 United States hCoV-19/USA/OR-PROV-135/2020
 C241T C3037T C14408T G20980A A23403G

EPI_ISL_482398
 2020-05-01 2020-07-03
 United States hCoV-19/USA/OR-PROV-136/2020
 C1567T A4236G C5974T G7100T G11083T C14805T C25276T T25655C G26144T G29868T

EPI_ISL_483289
 2020-05-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0667-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C379A C1059T C3037T G4657A C7231T C14408T C20199T G21578T A23403G G25563T

EPI_ISL_483290
 2020-05-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0668-SAN/2020
 ATTAAAGGTTT1- C241T C3037T C14408T G16741A A20268G A23403G C28854T

EPI_ISL_483293
 2020-05-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0674-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1288T C3037T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483334
 2020-05-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0754-IPL/2020
 C241T C3037T G10625A C14408T A15363G C18568T A20268G A23403G T24076C C28854T

EPI_ISL_483394
 2020-05-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0843-IPL/2020
 ATTA1- C241T C3037T G10625A C14408T A15363G C18568T A20268G A23403G T24076C C28854T

EPI_ISL_483404
 2020-05-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0901-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T T15606C G16475A A20268G A23403G C28854T

EPI_ISL_483419
 2020-05-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0930-IPL/2020
 ATTAAAGGTTTATACCT1- C241T C379A C1059T C3037T G4657A C7231T C14408T C20199T G21578T A23403G G25563T

EPI_ISL_483423
 2020-05-01 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0934-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T G16741A A20268G A23403G C28854T

EPI_ISL_484288
 2020-05-01 2020-07-08
 United Kingdom hCoV-19/England/NORT-29C9EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25494T C28876T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484292
 2020-05-01 2020-07-08
 United Kingdom hCoV-19/England/NORT-29CB24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1885C C2325T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484293
 2020-05-01 2020-07-08
 United Kingdom hCoV-19/England/NORT-29CBCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26305T G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484295
 2020-05-01 2020-07-08
 United Kingdom hCoV-19/England/NORT-29CC6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1389G C1912T C3037T C14408T A23403G T25248C C27425T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484360
 2020-05-01 2020-07-08
 United Kingdom hCoV-19/England/NOTT-11226E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5575T G8735A C14408T G22992A A23403G C23430T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484361
 2020-05-01 2020-07-08
 United Kingdom hCoV-19/England/NOTT-11227D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A C8660T C10626T A10948G G12917A C14408T A23403G C26010T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484362
 2020-05-01 2020-07-08
 United Kingdom hCoV-19/England/NOTT-11228C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T C4069T C6312A C8660T A10948G G12917A C14408T T20202C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484371
 2020-05-01 2020-07-08
 United Kingdom hCoV-19/England/NOTT-11232F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24370T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486266 MT750443
 2020-05-01 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2892T C3037T C14408T G21255C A23403G T25902W T25908W G25913S GGG28881AAC G28960T

EPI_ISL_486267 MT750444
 2020-05-01 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2013/2020
 AT1- C241T C3037T C14408T G21255C A23403G T25902W T25908W G25913S GGG28881AAC G28960T

EPI_ISL_486269
 2020-05-01 2020-07-10
 United States hCoV-19/USA/CA-CZB-2016/2020
 ATTAAAGGT1- C241T AAGTCATTT686- C3037T G6532T C14408T G18028K C18395T G18898T C21772T A23122R A23403G T25902W T25908W G25913S G26730T G28739T GGG28881AAC

EPI_ISL_486270 MT750446
 2020-05-01 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2017/2020
 C241T C823T C1457T C3037T G3304T C14408T G18898T G18907T C22208T A23403G GGG28881AAC G29692K

EPI_ISL_487533
 2020-05-01 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B2AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487545
 2020-05-01 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B3BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4960T C5312T C6633T C14408T T20285G A23403G G25563T G27852T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487570
 2020-05-01 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B3C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13548T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487575
 2020-05-01 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C3037T C14408T T19839C A23403G C26681T GGG28881AAC G29414T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487885
 2020-05-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7814C C14408T G18213T A18818G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487903
 2020-05-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3881G C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487904
 2020-05-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T G17122A A23403G G24998C T25580C C28836T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487948
 2020-05-01 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489194
 2020-05-01 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-100272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G713T C3037T G5012T C14408T T22714C A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_489302
 2020-05-01 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FD4A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489891 EPI_ISL_491087
 2020-05-01 2020-07-14
 Romania hCoV-19/Romania/ROSV_5849/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G A23403G C29167T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_491170
 2020-05-01 2020-07-16
 Oman hCoV-19/Oman/C-11911/2020
 A1T A5T G7A T9C T11C ACCTTCCCA14- T25G C241T C313T C3037T C14408T G20275T A23403G G24998T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_491573
 2020-05-01 2020-07-17
 United Kingdom hCoV-19/Scotland/EDB3876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G T26715K G26720R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493518
 2020-05-01 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493522
 2020-05-01 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6768G G7798T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493898
 2020-05-01 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB3907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493999
 2020-05-01 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C17491T G21624T A23403G GGG28881AAC

EPI_ISL_494441
 2020-05-01 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494478
 2020-05-01 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1282/2020
 ATTAAAG1- C241T A253G C3037T A10197G C14408T A20268G A23403G A23720G C28854T

EPI_ISL_494480
 2020-05-01 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A8252G C14408T A23403G G25563T

EPI_ISL_494481
 2020-05-01 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C7768T C8802T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_494482
 2020-05-01 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494483
 2020-05-01 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1290/2020
 ATTAAAG1- C241T C1150T C3037T G12518A C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494504 MT786798
 2020-05-01 2020-07-22
 United States SARS-CoV-2/human/USA/AL-QDX-207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A9562G C14408T G16710A G17893T C21575T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494507 MT786801
 2020-05-01 2020-07-22
 United States SARS-CoV-2/human/USA/CA-QDX-205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T C18928T C21714T A23403G A24014G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494508 MT786802
 2020-05-01 2020-07-22
 United States SARS-CoV-2/human/USA/CA-QDX-206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T C18928T C21714T A23403G A24014G G25563T G25855T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494509 MT786804
 2020-05-01 2020-07-22
 United States SARS-CoV-2/human/USA/CA-QDX-214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G24050C T24076C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494537 MT786836
 2020-05-01 2020-07-22
 United States SARS-CoV-2/human/USA/NM-QDX-215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A21900G A23403G G25563T A28264C G28857A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494645
 2020-05-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T

EPI_ISL_494651
 2020-05-01 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_495414
 2020-05-01 2020-07-22
 Turkey hCoV-19/Turkey/KU-004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C7765T C8326T C14408T C17690T C18877T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_495434
 2020-05-01 2020-07-22
 Turkey hCoV-19/Turkey/KU-024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C7765T C8326T C14408T C16428T C17690T C18877T A23403G G25563T G28857T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_495660 MT821778
 2020-05-01 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1485/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T T6329C C8316T C14408T A23403G G25563T C28826T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_498700 MT806761
 2020-05-01 2020-07-27
 United States SARS-CoV-2/human/USA/CA-QDX-265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C379A C1059T C3037T C14408T T17137C T22699C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498701 MT806762
 2020-05-01 2020-07-27
 United States SARS-CoV-2/human/USA/CA-QDX-266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2018G C3037T C14408T C18377T A23403G G25563T G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498702 MT806763
 2020-05-01 2020-07-27
 United States SARS-CoV-2/human/USA/CA-QDX-267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2018G C3037T C14408T A23403G G25563T G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498704 MT806765
 2020-05-01 2020-07-27
 United States SARS-CoV-2/human/USA/CA-QDX-269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1652G C3037T T6340A C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498742 MT806804
 2020-05-01 2020-07-27
 United States SARS-CoV-2/human/USA/TX-QDX-261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T8041C C14408T C18029T G22225T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499382
 2020-05-01 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10765T G11801A C14408T T19839C A23403G C23812T G25552T GGG28881AAC AAAAAA29898-

EPI_ISL_499789
 2020-05-01 2020-07-28
 United Kingdom hCoV-19/England/NORT-29CD00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4452G C14408T C20133T A23403G G27996T GGG28881AAC G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499790
 2020-05-01 2020-07-28
 United Kingdom hCoV-19/England/NORT-29CD1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1148T C3037T C14408T C17463T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499791
 2020-05-01 2020-07-28
 United Kingdom hCoV-19/England/NORT-29CD2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6196T C14408T C21736T A23403G G27750T G29745T C29762T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499792
 2020-05-01 2020-07-28
 United Kingdom hCoV-19/England/NORT-29CDA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499793
 2020-05-01 2020-07-28
 United Kingdom hCoV-19/England/NORT-29CDB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C26013A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499794
 2020-05-01 2020-07-28
 United Kingdom hCoV-19/England/NORT-29CE0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2623T A2854G C3037T G5716T C8772T C14408T T20343A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499795
 2020-05-01 2020-07-28
 United Kingdom hCoV-19/England/NORT-29CE49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6196T C12073T C14408T A23403G G27626T G27750T C29762T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501071
 2020-05-01 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1063D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G T23728C C23731T GGG28881AAC G29372A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507007 MT825091
 2020-05-01 2020-08-01
 Iran SARS-CoV-2/human/IRN/COVID19-IRVSH1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C48T T63C C92A C241T G252A A258C T426C A496G T582G T612C G747T A1080G G1212C AC1262CT C1281A C1450A T1657A A1731C C1887T T1983C T2322C A2512C C2836T C3037T A3137C T3605C A3852T T4122C G4392C C4740A G4881A T5061C C5376A C6033G C6555A G6741T G6753T G6885A C7164T T7287A T7438C A7506G T7737A A7863G A8052G A8232G T8313C G8550T C8697A C8772T C9057A T9081A T9282C C9375T T9516C T9540A A10017T C10080T C10209T C10239A A10305G C10386A A10551T G10575T T10591C G11115A C11130A C11162A G11175A T11181A C11232T T11274G C11328G G11391T T11523C G11535A T11631C G11634A T11880C G12243A C12493G C12855A T13380C G13425A A13428C A13455C A13695C T13731A A13872T A13917G A13938C T13983A A13992G T14037A T14232A T14295A C14408T T14595A T14655A T14778G C14898T T15021A T15135C C15183T C15315T A16044T T16194A C16338T T16617C C16626A T16692A C16716A T16752A A16998T C17145G A17460T G17592T C17718A T17772C T17832C A17892T G18090C C18189A T18243A G18318T T18375C A18432C A18522C C18582A C18877T C18912T A19062C T19218C T19275C A19323C T19506C G19635C T20172G A20382G T20502C A20547G T20571G G20808C T20838C T20859G T20958C T21102G G21123C G21255C G21372A T21522A A21556C A21999G G22132C G22365A C22444T C22572G T22665C C22794A A23382T A23403G C23577A A23883G G23955C T24482C C25002T G25116A T25251A G25299C G25387A T25446G A25512C G25563T C25614A T26112A C26222A G26233A T26342C T26355A T26500C A26562G C26697A C26735T T27193A T27288A A27388C A27417C T27495A C27603A T27702C T27733A G28077A C28103G T28218C G28262C G28302A C28332A G28719T C28854T A29442T T29681C A29712C A29740G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_507114
 2020-05-01 2020-08-03
 United Kingdom hCoV-19/England/NORT-29A5EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6133G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507252
 2020-05-01 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11292S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4810T C14408T T17694C A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507254
 2020-05-01 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11306S/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T T8167A C14408T A23403G C28826T GGG28881AAC G29773T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_508091
 2020-05-01 2020-08-03
 United States hCoV-19/USA/NM-UNM-00403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1126T C3037T C7749T A10323G C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508362
 2020-05-01 2020-08-04
 India hCoV-19/India/IK32/2020
 A4- C241T C3037T C4633T C13730T C14408T A23403G G29868A

EPI_ISL_508363
 2020-05-01 2020-08-04
 India hCoV-19/India/IK33/2020
 AT1- C241T C3037T C3903T C12374T C14408T T23068A A23403G G29868A

EPI_ISL_508364
 2020-05-01 2020-08-04
 India hCoV-19/India/IK35/2020
 C241T AAGTCATTT686- C829T C3037T G3351T C14408T G15906T A23403G C27689T G29868A

EPI_ISL_508424
 2020-05-01 2020-08-04
 India hCoV-19/India/MW12/2020
 ATTAAAGGTTTATACCTTCC1- G1820A C6310A C6312A G11083T C13730T C19524T C23929T C28311T G29868A

EPI_ISL_508449
 2020-05-01 2020-08-04
 India hCoV-19/India/S41/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1350T C3037T G9526T C14408T A23403G

EPI_ISL_510527 MT777677
 2020-05-01 2020-07-20
 France SARS-CoV-2/human/FRA/FR/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1059T C3037T C14408T A23403G A23618G G25563T G27996T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_513176
 2020-05-01 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH684/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C28253T

EPI_ISL_513897 MW036043
 2020-05-01 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2522/2020
 ATTA1- A187G C241T C829T T2698C C3037T C4897T C14408T C16376T A23348W A23403G G23867R C25916T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513898 MW036006
 2020-05-01 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGC1- C123Y C241T G944A C1059T C3037T C14408T A23403G G25563T G26526A GAT27382SWY A28967G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514753
 2020-05-01 2020-08-16
 Iran hCoV-19/Iran/IRVSH2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T A258C G747T G1212C A1731C C3037T A3405C A3414C T3605C C3634T G6741T A8052G C11162A A13992G C14408T C15324T A16044T G18315A A21999G A23403G A23985G A25137G C28854T T29681C GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_517583
 2020-05-01 2020-08-24
 United Kingdom hCoV-19/Scotland/EDB6912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517584
 2020-05-01 2020-08-24
 United Kingdom hCoV-19/Scotland/EDB6913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517585
 2020-05-01 2020-08-24
 United Kingdom hCoV-19/Scotland/EDB6916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517586
 2020-05-01 2020-08-24
 United Kingdom hCoV-19/Scotland/EDB6917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T C17550T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517587
 2020-05-01 2020-08-24
 United Kingdom hCoV-19/Scotland/EDB6919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T C17550T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522279
 2020-05-01 2020-08-25
 United States hCoV-19/USA/UT-02961/2020
 C241T C1059T C3037T A7870G C14408T A23403G G25563T C27964T G29543T

EPI_ISL_522285
 2020-05-01 2020-08-25
 United States hCoV-19/USA/UT-02974/2020
 A1- C241T C1059T C3037T A7870G C11109T C14408T A23403G G25563T C27964T C28093T G28460K

EPI_ISL_522288
 2020-05-01 2020-08-25
 United States hCoV-19/USA/UT-02979/2020
 C241T C1059T C3037T A7870G G12315A C14408T A23403G G25396T G25563T G27670T C27964T G29543T

EPI_ISL_522300
 2020-05-01 2020-08-25
 United States hCoV-19/USA/UT-03028/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T T20049C C21627A A23403G C23655T G25563T G27415A

EPI_ISL_522311
 2020-05-01 2020-08-25
 United States hCoV-19/USA/UT-03039/2020
 ATTA1- C241T C1059T C3037T C14408T T20049C C21627A A23403G C23655T G23856T G25563T T27586C G28960T

EPI_ISL_522859
 2020-05-01 2020-08-26
 Italy hCoV-19/Italy/VR-IZSVe-51635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7765T C14408T A23403G GGG28881AAC GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_523175
 2020-05-01 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G199A C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523354
 2020-05-01 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T G11634T C14408T A16179G A22184G A23403G GGG28881AAC TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_523355
 2020-05-01 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T G11634T C14408T A16179G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523402
 2020-05-01 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9861C C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524786
 2020-05-01 2020-08-28
 Brazil hCoV-19/Brazil/PA-IEC-165302/2020
 C241T C3037T A6319G C14408T A23403G G25088T T26149C C27879T GGG28881AAC

EPI_ISL_526509
 2020-05-01 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5835T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526510
 2020-05-01 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5835T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526511
 2020-05-01 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526512
 2020-05-01 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5835T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526514
 2020-05-01 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T A20268G A23403G G27987T C28854T T29244C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527690
 2020-05-01 2020-09-04
 United States hCoV-19/USA/MN-CDC-6274/2020
 C241T GTT669- C1059T C3037T C14408T A23403G G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527691
 2020-05-01 2020-09-04
 United States hCoV-19/USA/MN-CDC-6277/2020
 C17747T A17858G C18060T G22302A A22305C A24694T C26461T C27881T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527720
 2020-05-01 2020-09-04
 United States hCoV-19/USA/MN-CDC-6527/2020
 C241T C1059T C1314T C3037T C14408T A23403G G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528391
 2020-05-01 2020-09-07
 United Kingdom hCoV-19/England/20189113304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1059Y A2480G C2558T C3037Y G11083K C14408Y C14805T C15720Y A23403R C25413Y G25563K G26144T C27493Y G28899K

EPI_ISL_530083
 2020-05-01 2020-09-10
 Spain hCoV-19/Spain/MD-LP86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530202 MT997724
 2020-05-01 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C2459T C3037T G14008A C14408T C17676T C22227T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_534312
 2020-05-01 2020-09-13
 Brazil hCoV-19/Brazil/SP-315/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C8293T C14408T A14487G CT14491TC TG14499GA A22720G A23403G T27299C GGG28881AAC T29148C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_534326
 2020-05-01 2020-09-13
 Brazil hCoV-19/Brazil/SP-340/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G3353A G5305T C12053T C14408T T14501G C14931T A23403G G25088T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_534958
 2020-05-01 2020-09-14
 United Kingdom hCoV-19/England/OXON-B44F0/2020
 C241T C1441T C2862T C3037T C9438T C14408T T18398C A23403G G24781T GGG28881AAC A29894G

EPI_ISL_537506
 2020-05-01 2020-09-16
 United States hCoV-19/USA/CA-UCLA-18/2020
 A1- C241T C1059T C3037T C14408T C18828T A23403G G25563T G26746T G28739T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_539828 MW020065
 2020-05-01 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C18647T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_540422 MW039235
 2020-05-01 2020-09-21
 United States SARS-CoV-2/human/USA/WY-WYPHL-20011656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C683T C1059T C1938A C3037T G3564T C14408T A18227C G18580T A23403G G25563T C29870A

EPI_ISL_542671
 2020-05-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17808T C21721T A23403G C23595T G25563T T27384C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542673
 2020-05-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T C11916T C14408T C18998T G21372T A23403G G25563T C27654T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542683
 2020-05-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542684
 2020-05-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C6843T C8782T C8950T G12478A T18736C C19901T C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542688
 2020-05-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17808T C21721T A23403G G25563T T27384C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542690
 2020-05-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C21587T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542700
 2020-05-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542707
 2020-05-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16616T G22028C A23403G G25563T C27964T G28845T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542718
 2020-05-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2848G C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542729
 2020-05-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C24034T T26729C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542735
 2020-05-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4113T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542763
 2020-05-01 2020-09-23
 United States hCoV-19/USA/TX-HMH-1509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3784T C8664T C14408T A23403G G25563T G29027T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545233
 2020-05-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547497
 2020-05-01 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C3330T C6633T C8092T C9163T G10793A C11109T C14408T A23403G G25563T G27390T G28845T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547498
 2020-05-01 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C3330T C6633T C8092T C9163T G10793A C11109T C14408T A23403G G25563T G27390T G28845T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568963
 2020-05-01 2020-10-02
 France hCoV-19/France/IHU-0787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T G9479T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568965
 2020-05-01 2020-10-02
 France hCoV-19/France/IHU-0789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T G9479T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568967
 2020-05-01 2020-10-02
 France hCoV-19/France/IHU-0793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1912T C2416T C2910T C3037T G8371T C14408T T16248C A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT460089
 2020-05-01 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1089/2020
 ATTAAAGGTTT1- C6363T C9979T T24628C C25692T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT460090
 2020-05-01 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1090/2020
 ATTAAAG1- G491A A14940G

MT460092
 2020-05-01 2020-05-12
 United States SARS-CoV-2/human/USA/CA-CZB-1092/2020
 ATTAAAGGTTTATACCT1- G491A A14940G T15771K AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT797758
 2020-05-01 2020-07-24
 United States SARS-CoV-2/human/USA/COVID20-0118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C16349T C17676T C21110T A23403G G25563T C27964T C28846T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT797759
 2020-05-01 2020-07-24
 United States SARS-CoV-2/human/USA/COVID20-0119/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T C16349T C17676T C21110T A23403G G25563T C27964T C28846T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT797772
 2020-05-01 2020-07-24
 United States SARS-CoV-2/human/USA/COVID20-0116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T C16349T C17676T C21110T A23403G G25563T C27964T C28846T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT810668
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1211-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810705
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1282-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T A10197G C14408T A20268G A23403G A23720G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810707
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1287-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A8252G C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810708
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1288-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T C8802T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810709
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1289-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810710
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1290-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1150T C3037T G12518A C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810846
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1530-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810852
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1538-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811302
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0667-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C7231T C14408T C20199T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811303
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0668-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T G16741A A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811306
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0674-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811347
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0754-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G10625A C14408T A15363G C18568T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811406
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0843-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G10625A C14408T A15363G C18568T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811411
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0901-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T T15606C G16475A A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811426
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0930-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T G4657A C7231T C14408T C20199T G21578T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811430
 2020-05-01 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0934-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T G16741A A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873081
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01081/2020
 ATTAAA1- C241T C2416T C3037T C5467T C14408T T19383C A23403G G25563T G26233T

MT873091
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01032/2020
 ATTAAA1- C241T AAGTCATTT686- A1904C C2416T C3037T G10396T C14408T A23403G G25563T G26233T

MT873102
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01111/2020
 ATTAA1- C241T C1059T C3037T C14408T A23403G G25563T

MT873112
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01089/2020
 ATTAAA1- C241T C1059T C3037T C14408T C17676T A23403G G25252T G25563T

MT873125
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01107/2020
 ATTAA1- G105T C241T C3037T C14408T C18877T A23403G G25563T G26152A

MT873133
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01096/2020
 ATTAAA1- G105T C241T C643T C3037T C5144T C11758T C14408T C18877T A23403G G25563T

MT873152
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01080/2020
 AT1- C241T C3037T C3885T A6677G C14408T T20439C C23086T A23403G C25714T C25916T T27299C C27970T GGG28881AAC T29148C C29769T

MT873200
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00996/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T

MT873237
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01076/2020
 ATTAAA1- C241T C2416T C3037T C14408T A15706G C18084T G23126T A23403G G25563T G26233T

MT873265
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01048/2020
 ATTAAA1- C241T C1059T C3037T C9693T G11083T C14408T C18929T A23403G G25563T

MT873269
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01068/2020
 ATTAAA1- C241T C2416T C3037T C14408T A15706G C18084T G23126T A23403G G25563T G26233T

MT873277
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01061/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T G26233T

MT873331
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01031/2020
 ATTAAA1- C241T AAGTCATTT686- A1904C C2416T C3037T G10396T C14408T A23403G G25563T G26233T

MT873364
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01086/2020
 ATTAAA1- C241T C3037T C13862T C14408T G19816T A23403G C25728T C28836T

MT873367
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01045/2020
 AT1- G105T C241T C3037T C12525T C14408T C18877T G19962A A23403G G25563T

MT873373
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01109/2020
 ATTAAA1- C241T C1059T C3037T C14408T C17676T A23403G G25252T G25563T

MT873379
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01084/2020
 TAAA3- C241T C3037T C13862T C14408T G19816T A23403G C25728T C28836T

MT873384
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01057/2020
 TAAA3- C241T C1059T C3037T C14408T C19572T A23403G G25563T C28836T

MT873389
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00992/2020
 AT1- C241T C2416T C3037T C14408T A23403G G25563T G26233T C29738T C29870A

MT873411
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01103/2020
 ATTAAA1- C241T C2416T C3037T C14408T A23403G G25563T

MT873472
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01110/2020
 ATTAA1- C241T C1059T C3037T C14408T C17676T G21785A A23403G G25252T G25471C G25563T

MT873484
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01092/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T A23403G G25563T

MT873493
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01063/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T

MT873504
 2020-05-01 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01049/2020
 ATTA1- C241T C2416T C3037T A5725G C14408T C16887T A23403G C24096A G25563T

MT889692
 2020-05-01 2020-08-16
 Iran SARS-CoV-2/human/IRN/COVID19-IRVSH2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T A258C G747T G1212C A1731C C3037T A3405C A3414C T3605C C3634T G6741T A8052G C11162A A13992G C14408T C15324T A16044T G18315A A21999G A23403G A23985G A25137G C28854T T29681C GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT955360
 2020-05-01 2020-09-03
 Italy SARS-CoV-2/human/ITA/Milan_ICCS_3/2020
 C241T C3037T G12674A C14408T A23403G -25692TGA C25854T

MT967906
 2020-05-01 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6527/2020
 C241T C1059T C1314T C3037T C14408T A23403G G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

MT967943
 2020-05-01 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6274/2020
 C241T GTT669- C1059T C3037T C14408T A23403G G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

MT967944
 2020-05-01 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6277/2020
 C17747T A17858G C18060T G22302A A22305C A24694T C26461T C27881T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MT994286
 2020-05-01 2020-09-11
 Iran SARS-CoV-2/human/IRN/COVID19-IRVSH3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACG1- G1397A A3481C T8707C G20887A C21627T C22735T T28688C C28830T G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT994632
 2020-05-01 2020-09-12
 Iran SARS-CoV-2/human/IRN/COVID19-IRVSH4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G1397A G2384C A2684C G3407C A6677C G8204A G11083T A15986G C18377T G19967A C21377A T23024C C24404A T27904C C27944G A28220T G28457C G28916C G29315A G29374A C29537A G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT994849
 2020-05-01 2020-09-13
 Iran SARS-CoV-2/human/IRN/COVID19-IRVSH5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G1397A G1785C G3125C A3481C T8187C T8707C C9072A T9252C T9405C G10704A G11625A C12225T C18377T T26624C C27026A A27185G A29147G G29374A T29597C G29742T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

MT994881
 2020-05-01 2020-09-13
 Iran SARS-CoV-2/human/IRN/COVID19-IRVSH6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G1397A G11083T C18377T G22157C T26327C G26567A T27587A T27767A T28244C G29374A G29742T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

MW001257
 2020-05-01 2020-09-14
 United States SARS-CoV-2/human/USA/240-NP-OP/2020
 C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW001260
 2020-05-01 2020-09-14
 United States SARS-CoV-2/human/USA/242-NP-OP/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MW001262
 2020-05-01 2020-09-14
 United States SARS-CoV-2/human/USA/247-NP-OP/2020
 C241T C1059T C3037T C14408T G18958T A23403G G25563T C26461T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MW041156
 2020-05-01 2020-09-28
 United Kingdom SARS-CoV-2/Homo sapines/GBR/liverpool_strain/2020
 A6948C G11083T C21005T C25452T C28253T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_436896
 2020-05-02 2020-05-07
 United States hCoV-19/USA/WI-GMF-02263/2020
 C241T C1059T C1314T C3037T C14408T G22349T A23403G G25563T A27821G

EPI_ISL_439366
 2020-05-02 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3918/2020
 C241T C3037T C14408T G15439A A23403G G25429T G25687T C28737T

EPI_ISL_439367
 2020-05-02 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3919/2020
 C241T C313T C3037T T3268C C14408T A23403G GGG28881AAC

EPI_ISL_439665
 2020-05-02 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3925/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_439666
 2020-05-02 2020-05-12
 United Kingdom hCoV-19/Scotland/EDB3941/2020
 C241T C1059T C3037T C14408T A20268G A23403G C24054T C25416T C28854T C29541T

EPI_ISL_444482 MT467259
 2020-05-02 2020-05-13
 India SARS-CoV-2/human/IND/GBRC51/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C28311T

EPI_ISL_444483 MT467260
 2020-05-02 2020-05-13
 India SARS-CoV-2/human/IND/GBRC52/2020
 C241T C3037T C9438T C14408T A23403G

EPI_ISL_447052 MT496996
 2020-05-02 2020-05-16
 India SARS-CoV-2/human/IND/GBRC74/2020
 C241T C3037T C14408T T20063C A23403G C23638T

EPI_ISL_447552 MT481905
 2020-05-02 2020-05-17
 India SARS-CoV-2/human/IND/GBRC90/2020
 C241T C3037T C14408T G16852T C18877T G19417T G19872T A23403G G25563T T25649G C26735T C28948T

EPI_ISL_448011
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD7E1/2020
 C241T C3037T G8612T C14408T A23403G GGG28881AAC G29705T

EPI_ISL_448013
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD80C/2020
 C241T C3037T C12915T C14408T A20268G A23403G

EPI_ISL_448016
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD857/2020
 C241T C3037T C14408T C14805T A23403G G24368T GGG28881AAC

EPI_ISL_448022
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD8EE/2020
 C241T A2775G C3037T G4255T C13568T C14235T C14408T A20355G A23403G A26530G

EPI_ISL_448024
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD918/2020
 C241T C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC

EPI_ISL_448036
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1ADB30/2020
 C241T C1059T C1437T C3037T T13006C C14408T A23403G A24070T G25563T C25688T C27945T

EPI_ISL_448365
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9D8E/2020
 ATTAAAGGTT1- C241T C3037T G3567A C14408T T23047C A23403G GGG28881AAC

EPI_ISL_448370
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9DF7/2020
 ATTAAAGG1- C241T C2940T C3037T C7765T C14408T A23403G

EPI_ISL_448371
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9E12/2020
 ATTA1- C241T C3037T A9749G C14408T G22567R A23403G A24232G G25429T G25726K G27788T

EPI_ISL_448376
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9E9A/2020
 ATTAAAGGTTTAT1- C241T C2940T C3037T G4148T C14408T A23403G

EPI_ISL_448377
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9EA9/2020
 ATTAAAGGTTTATACC1- C241T C3037T A9749G C14408T A20860G A23403G A24232G G25429T G27788T

EPI_ISL_448380
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9EF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5411T G6669T C9430T C14408T C19017T G22992A A23403G C26270T C27630T C27641T GGG28881AAC

EPI_ISL_448383
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9FE2/2020
 A1- C241T C3037T C9977A C13694T C14408T G17608T C19554T A23403G G24197T G25429T

EPI_ISL_448388
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/NORW-EA109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2940T C3037T C14408T C21648T A23403G

EPI_ISL_448400
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110C80/2020
 C241T C1862T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_448402
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110CAE/2020
 A2480G C2558T C2940T A3842G G11083T C14805T G26144T

EPI_ISL_448405
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110CDB/2020
 C241T C1862T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G25429T GGG28881AAC

EPI_ISL_448406
 2020-05-02 2020-05-19
 United Kingdom hCoV-19/England/NOTT-110CEA/2020
 C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789-

EPI_ISL_451157 MT509649
 2020-05-02 2020-05-23
 India SARS-CoV-2/human/IND/GBRC112/2020
 C241T C3037T C4084T C9246T C14408T T14679C A23403G AGTGTAC29756-

EPI_ISL_451163 MT509650
 2020-05-02 2020-05-23
 India SARS-CoV-2/human/IND/GBRC118/2020
 C241T C3037T C4084T C14408T A23403G G24757T

EPI_ISL_451203
 2020-05-02 2020-05-24
 United States hCoV-19/USA/LA-EVTL042/2020
 C241T C1059T C3037T C14408T C17678T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451213
 2020-05-02 2020-05-24
 United States hCoV-19/USA/LA-EVTL052/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451217
 2020-05-02 2020-05-24
 United States hCoV-19/USA/LA-EVTL056/2020
 C241T C1059T C1943T C3037T T6226C C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451226
 2020-05-02 2020-05-24
 United States hCoV-19/USA/LA-EVTL065/2020
 C241T C1059T C3037T C14408T C20844T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451227
 2020-05-02 2020-05-24
 United States hCoV-19/USA/LA-EVTL066/2020
 C241T C1059T C3037T C14408T C20844T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451644
 2020-05-02 2020-05-25
 Poland hCoV-19/Poland/Pom3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A C13536T C14408T A18887G A23403G C23731T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_451645
 2020-05-02 2020-05-25
 Poland hCoV-19/Poland/Pom4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_454272
 2020-05-02 2020-05-28
 Portugal hCoV-19/Portugal/PT0548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3140T C9778T C14408T C17104T A23403G G24077T G24535T C29555T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_455017 MT539173
 2020-05-02 2020-05-29
 India SARS-CoV-2/human/IND/GBRC120/2020
 C241T C3037T C8146T G11335T C11620T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_455018 MT539166
 2020-05-02 2020-05-29
 India SARS-CoV-2/human/IND/GBRC121/2020
 C241T C3037T A3372G C4084T C14408T A22004T A23403G

EPI_ISL_455019 MT539171
 2020-05-02 2020-05-29
 India SARS-CoV-2/human/IND/GBRC122/2020
 C241T C3037T C4084T C14408T A23403G

EPI_ISL_455020 MT539176
 2020-05-02 2020-05-29
 India SARS-CoV-2/human/IND/GBRC123/2020
 C241T C3037T C4084T G5194T C14408T C22326T A23403G

EPI_ISL_455021 MT539164
 2020-05-02 2020-05-29
 India SARS-CoV-2/human/IND/GBRC124/2020
 C241T C3037T C11620T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_455022 MT539165
 2020-05-02 2020-05-29
 India SARS-CoV-2/human/IND/GBRC125/2020
 C241T C3037T C4084T C14408T A23403G

EPI_ISL_455023 MT539167
 2020-05-02 2020-05-29
 India SARS-CoV-2/human/IND/GBRC126/2020
 C241T C3037T G11335T C11620T C14408T C18877T C18888T A23403G G25563T C26735T

EPI_ISL_455024 MT539168
 2020-05-02 2020-05-29
 India SARS-CoV-2/human/IND/GBRC127/2020
 C241T C3037T C4084T C14408T A23403G

EPI_ISL_455025 MT539172
 2020-05-02 2020-05-29
 India SARS-CoV-2/human/IND/GBRC128/2020
 C241T C3037T C4084T G5572T C14408T A23403G

EPI_ISL_455026 MT539169
 2020-05-02 2020-05-29
 India SARS-CoV-2/human/IND/GBRC129/2020
 C241T G377T C3037T C4084T C14408T A23403G

EPI_ISL_455027 MT539175
 2020-05-02 2020-05-29
 India SARS-CoV-2/human/IND/GBRC130/2020
 C241T C3037T C11620T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_455662
 2020-05-02 2020-06-01
 India hCoV-19/India/S33/2020
 C241T A2127C C3037T C14408T A23403G G28221T

EPI_ISL_455663
 2020-05-02 2020-06-01
 India hCoV-19/India/S34/2020
 C241T C3037T C14408T C22530T A23403G G26730T

EPI_ISL_455673
 2020-05-02 2020-06-01
 India hCoV-19/India/S53/2020
 C106T C241T C3037T C12439T C13585T C14408T A23403G G29543T

EPI_ISL_456479 MT612170
 2020-05-02 2020-06-02
 Australia SARS-CoV-2/human/AUS/VIC1557/2020
 C241T C1059T C3037T C6651T C14408T C18555T C18744T G20580T A23403G G25563T C25572T

EPI_ISL_456788
 2020-05-02 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456789
 2020-05-02 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456790
 2020-05-02 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T G14023A C14408T C15237T C18029T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456793
 2020-05-02 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456795
 2020-05-02 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G ACAATT25417- C28531T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_457411 LR814026
 2020-05-02 2020-06-02
 United Kingdom NORW-EB232
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T G3567A C9491T C14408T A23403G GGG28881AAC

EPI_ISL_457418 LR814022
 2020-05-02 2020-06-02
 United Kingdom NORW-EB320
 AT1- C241T C3037T G4962T C14408T C21736T C22050T A23403G C25728T GGG28881AAC

EPI_ISL_457434 LR814179
 2020-05-02 2020-06-02
 United Kingdom NORW-EB487
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T G3567A C11916Y C14408T T23047C A23403G C26370T GGG28881AAC

EPI_ISL_457447 LR814115
 2020-05-02 2020-06-02
 United Kingdom NORW-EB5EE
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_457471 LR821987
 2020-05-02 2020-06-02
 United Kingdom NORW-EBA85
 ATTA1- C241T C3037T C6385T C14408T A23403G G25912T GGG28881AAC

EPI_ISL_457581
 2020-05-02 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C0989/2020
 C241T C3037T C14408T T21784C A22004G A22253T A23403G GGG28881AAC G29781T

EPI_ISL_457596
 2020-05-02 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C2C7F/2020
 C241T C3037T G4760C G10097A C11750T C13381T C14408T A23403G C23731T A23992T C25350T G28580T GGG28881AAC

EPI_ISL_457620
 2020-05-02 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C7928/2020
 C241T C3037T C14408T T21784C A22004G A22253T A23403G G28361A GGG28881AAC

EPI_ISL_457640
 2020-05-02 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CA266/2020
 C241T C3037T C14408T A23403G G23873T G26049T C27476T GGG28881AAC

EPI_ISL_457657
 2020-05-02 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CC9E7/2020
 ATG1605- A1904G T3073C C8090T C10789T A12796C G21800T T22965C C28609T C28657T G28857A

EPI_ISL_457672
 2020-05-02 2020-06-02
 United Kingdom hCoV-19/England/SHEF-D0388/2020
 C241T C3037T C14408T A23403G T28098C GGG28881AAC

EPI_ISL_457678
 2020-05-02 2020-06-02
 United Kingdom hCoV-19/England/SHEF-D0898/2020
 C241T C3037T G7328T C14408T C16101T A18616G A23403G GGG28881AAC GCCACGCGGAGTACGATCGAGTGTACAGT29737-

EPI_ISL_461219
 2020-05-02 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C817T C1594T C3037T C11109T C14408T C19269T C19554T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461368
 2020-05-02 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16047C C16308T T18417C C20148T A23403G C27213T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461478 MT576035
 2020-05-02 2020-06-06
 India SARS-CoV-2/human/IND/GBRC151a/2020
 C241T C1204T C3037T C4084T G5029T C14408T C16393T A23403G

EPI_ISL_461479 MT576037
 2020-05-02 2020-06-06
 India SARS-CoV-2/human/IND/GBRC151b/2020
 C241T C3037T C4084T G5029T C14408T C16393T A23403G

EPI_ISL_461480 MT576039
 2020-05-02 2020-06-06
 India SARS-CoV-2/human/IND/GBRC152/2020
 C241T C3037T C3429T C8917T C11620T C14408T C18877T G23401T A23403G G25563T C26735T

EPI_ISL_461792
 2020-05-02 2020-06-06
 United Kingdom hCoV-19/England/NORT-2854E7/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29674T

EPI_ISL_463518 MT642231
 2020-05-02 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1028/2020
 AT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463583 MT642294
 2020-05-02 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1093/2020
 ATTAAAG1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_465552
 2020-05-02 2020-06-11
 United Kingdom hCoV-19/England/20189155304/2020
 C241T C1514T C3037T C14408T A21405T C21727T A23403G G26567T GGG28881AAC

EPI_ISL_465554
 2020-05-02 2020-06-11
 United Kingdom hCoV-19/England/20189156401/2020
 C241T C1514T C3037T C14408T A21405T A23403G G26567T GGG28881AAC

EPI_ISL_465555
 2020-05-02 2020-06-11
 United Kingdom hCoV-19/England/20189156601/2020
 C241T C1514T C3037T C14408T A21405T A23403G G26567T GGG28881AAC

EPI_ISL_465556
 2020-05-02 2020-06-11
 United Kingdom hCoV-19/England/20189156801/2020
 C241T C1514T C3037T C14408T A21405T A23403G C25578Y G26567T GGG28881AAC

EPI_ISL_465557
 2020-05-02 2020-06-11
 United Kingdom hCoV-19/England/20189157404/2020
 C241T C1514T C3037T C14408T A21405T A23403G G26567T GGG28881AAC A29869G

EPI_ISL_465558
 2020-05-02 2020-06-11
 United Kingdom hCoV-19/England/20189157501/2020
 C241T C1514T C3037T C14408T A21405T A23403G G26567T G27676T GGG28881AAC

EPI_ISL_465560
 2020-05-02 2020-06-11
 United Kingdom hCoV-19/England/20189158801/2020
 G105T C241T C3037T T4167Y G5008K C14408T C15240Y T21527Y A23403G GGG28881AAC

EPI_ISL_465561
 2020-05-02 2020-06-11
 United Kingdom hCoV-19/England/20189159304/2020
 G105T C241T A2176R C3037T C14408T A23403G GGG28881AAC

EPI_ISL_465563
 2020-05-02 2020-06-11
 United Kingdom hCoV-19/England/20189159504/2020
 G105T C241T C3037T C14408T A23403G GGG28881AAC AA29876MM

EPI_ISL_465565
 2020-05-02 2020-06-11
 United Kingdom hCoV-19/England/20189159904/2020
 G105T C241T C3037T C14408T C23280T A23403G GGG28881AAC

EPI_ISL_465577
 2020-05-02 2020-06-11
 United Kingdom hCoV-19/England/20189182004/2020
 A2480G C2558T G11083T C13083T C14805T C21846A C25546T G26144T C29546T

EPI_ISL_466905
 2020-05-02 2020-06-12
 Germany hCoV-19/Germany/BAV-MVP0251/2020
 C541T G1440A G2891A C11109T

EPI_ISL_468044 MT510690
 2020-05-02 2020-05-25
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C5284T C14408T C18877Y A23403G G25563T C28849T G29744A TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_468045 MT510691
 2020-05-02 2020-05-25
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T T3011Y C3037T G4354K C5020Y C5284Y A9483M C14408Y A23403G G25563T C28849Y G29744A TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_468046 MT510692
 2020-05-02 2020-05-25
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C5284T C14408T A23403G G25563T C28849T G29744A TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_468047 MT510693
 2020-05-02 2020-05-25
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C2113T C2940T C3037T C7113T C14408T G22785T A23403G G28321A A28591T TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_468048 MT510694
 2020-05-02 2020-05-25
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T T3011C C3037T C5020T C14408T A23403G TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_468049 MT510695
 2020-05-02 2020-05-25
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C5284T C14408T A23403G G25563T C28849T G29744A TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_468050 MT510696
 2020-05-02 2020-05-25
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC006/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C5284T C14408T C18329Y A23403G G25563T C28849T G29744A TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_468051 MT510697
 2020-05-02 2020-05-25
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C4990T C5467T T9982C C14408T A18259R C18877T A23403G G25563T A27456G C27689T T29317C TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_468052 MT510698
 2020-05-02 2020-05-25
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T T3011C C3037T G4354T C5020T A9483C C14408T A23403G TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_468053 MT510699
 2020-05-02 2020-05-25
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T T3011Y C3037T G4354K G4444K C5020Y A9483M C14408Y C16952Y C18029Y C18877Y A23403G G24415R G25563T C27741Y A29500G TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_468055 MT510701
 2020-05-02 2020-05-25
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC010/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C823T C3037T G4180T G5230T C14408T C18877T A23403G A25105G G25563T C26735T C28377T C29247G TAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29823-

EPI_ISL_468056 MT510702
 2020-05-02 2020-05-25
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T C4752Y C14408Y C18877Y A23403G G25563K TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_468057 MT510703
 2020-05-02 2020-05-25
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T T3011Y C3037T C3096Y A3959R G4354K C5284Y A9483M C14408T A23403G G25563K C28849Y G29744A TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_468059 MT511065
 2020-05-02 2020-05-26
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C3037T G6884A T7438Y C14408T C15866S C18877T A23403G G25563T A29735G TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_468060 MT511083
 2020-05-02 2020-05-26
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T C2940Y C3037T C14408T C18877Y G22785K A23403G G25563K G28321R A28591W TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_468475 MT628202
 2020-05-02 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1530/2020
 T2K C241T C3037T C12084T C14408T A20268G G22604T C22858T A23403G C28087Y C28854T G29511T

EPI_ISL_469055
 2020-05-02 2020-06-17
 Sweden hCoV-19/Sweden/20-14262/2020
 G165A C203T C241T C1059T C2937T C3037T C14408T A23403G G25563T

EPI_ISL_469275
 2020-05-02 2020-06-18
 Egypt hCoV-19/Egypt/CUNCI-HGC002-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T T3011Y C3037T G4354K C5020Y C5284Y A9483M C14408Y A23403G G25563T C28849Y G29744A TTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29821-

EPI_ISL_472422
 2020-05-02 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111EE3/2020
 C241T C3037T T8806C C14408T A23403G GGG28881AAC

EPI_ISL_472428
 2020-05-02 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111F59/2020
 C241T C3037T C6312A C8660T C10626T A10948G G12917A C14408T A23403G C26010T GGG28881AAC

EPI_ISL_473283
 2020-05-02 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16336B/2020
 C241T C3037T C14408T A23403G

EPI_ISL_473321
 2020-05-02 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F6D3/2020
 C241T C2113T C2710T C2925T C3037T C7765T C10036T C12439T C14408T C14503T C17690T C18877T G20134T T20697C A23403G G25563T

EPI_ISL_473322
 2020-05-02 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F70D/2020
 C241T C2061T C3037T G3216T C5140T C14408T A23403G GGG28881AAC G28903T

EPI_ISL_473324
 2020-05-02 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F73A/2020
 C241T C2469T C3037T C6279T C14408T A16474G A23403G GGG28881AAC

EPI_ISL_474012
 2020-05-02 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1638C6/2020
 AT1- C241T C3037T G11083T C14408T A23403G A25575C G29315C

EPI_ISL_474104
 2020-05-02 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163F3A/2020
 C241T C3037T G11801A C14408T T19839C A23403G G25552T GGG28881AAC C29545A

EPI_ISL_474118
 2020-05-02 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164036/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T G16975K G23270T A23403G G25563T C28472T

EPI_ISL_474122
 2020-05-02 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164072/2020
 A1- C241T C3037T T4186C G11801A C14408T T19839C A23403G G25552T C27641T GGG28881AAC A29526T

EPI_ISL_474181
 2020-05-02 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164485/2020
 AT1- C241T C3037T C9438T C14408T A16653G A23403G GGG28881AAC G29777T

EPI_ISL_474184
 2020-05-02 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1644C1/2020
 ATTAAAGGT1- C241T C3037T C14408T C14741T G23311T A23403G

EPI_ISL_474211
 2020-05-02 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164670/2020
 ATT1- C241T G1589R C3037T C14408T A23403G G25429T G29474T

EPI_ISL_475176
 2020-05-02 2020-06-23
 United States hCoV-19/USA/NE-10749/2020
 C100T C241T C1059T C1912T C3037T T6086A T13996G C14408T A23403G G25563T

EPI_ISL_476025
 2020-05-02 2020-06-25
 Morocco hCoV-19/Morocco/CA24/2020
 AT1- C241T C3037T C4824T C4829T C14408T G15575T C15924T G22494A A23403G C25665T T28245G T28251CTG CA28253TC A28449C C28453G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_476738
 2020-05-02 2020-06-25
 United States hCoV-19/USA/MN-MDH-1153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C539T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_476997
 2020-05-02 2020-06-27
 Belgium hCoV-19/Belgium/rega-0502481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1835A C3037T C14408T C15324T T20034C A23403G G26450A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476998
 2020-05-02 2020-06-27
 Belgium hCoV-19/Belgium/rega-0502482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A12044G C13421T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477246
 2020-05-02 2020-06-29
 India hCoV-19/India/InStem_NCBS_0046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- AAGTCATTT686- C6312A G11083T C13730T T16732G C23929T C28311T A29875C A29885G

EPI_ISL_477278
 2020-05-02 2020-06-29
 United States hCoV-19/USA/MN-MDH-1188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_477279
 2020-05-02 2020-06-29
 United States hCoV-19/USA/MN-MDH-1189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_477650 MT679174
 2020-05-02 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0434/2020
 ATTA1- C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_477651 MT679175
 2020-05-02 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0435/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T C29870A

EPI_ISL_477652 MT679176
 2020-05-02 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0436/2020
 ATTA1- C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T C26735T

EPI_ISL_477653 MT679177
 2020-05-02 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0437/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T C29870A

EPI_ISL_477654 MT679178
 2020-05-02 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38R C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T C29870A

EPI_ISL_477655 MT679179
 2020-05-02 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0439/2020
 ATTAAAGGT1- C241T C3037T T4389G C14408T C18877T G22770A A23403G G25459T G25555T G25563T G28086T

EPI_ISL_477656 MT679180
 2020-05-02 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0440/2020
 T2Y C241T C3037T T4389G C14408T C18877T G22770A A23403G G25459T G25555T G25563T G28086T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477657 MT679181
 2020-05-02 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0441/2020
 ATTAAAGGTTTATAC1- C241T C3037T T4389G C14408T C18877T G22770A A23403G G25459T G25555T G25563T G28086T

EPI_ISL_479069
 2020-05-02 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1A88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAAT1- C84Y C241T T1177C C3037T C6723T C14408T A23403G C27509T C28011A GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_479099
 2020-05-02 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1EAA/2020
 C241T C3037T C5183T C14408T A20268G A23403G C26571T G28109T C28854T G28968T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_480250
 2020-05-02 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV149/2020
 C241T C3037T C12809T C14408T C20629T T20799C A23403G C28849T GGG28881AAC

EPI_ISL_480251
 2020-05-02 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV152/2020
 C241T A1830C C2113T C3037T C7765T C14408T C17690T C18877T A23403G C23625T G25563T

EPI_ISL_480252
 2020-05-02 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV153/2020
 C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T

EPI_ISL_480254
 2020-05-02 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV156/2020
 C241T C2113T C3037T T6262C C7765T T10222C C14408T C17690T C18877T A23403G G25563T C25624T

EPI_ISL_480893 MT704060
 2020-05-02 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C1917T C3037T C14408T C18060T A23403G G25471C G25563T C28453T C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480894 MT704061
 2020-05-02 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0243/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25471C G25563T G26065T CCACGCGGAGTACGATCGAGTGT29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480897 MT704064
 2020-05-02 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T A9294T C10188T C14408T A20431G T22220C A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480898 MT704065
 2020-05-02 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C10188T C14408T A20431G T22220C A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482007
 2020-05-02 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DC53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T G4720A A4928T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482076
 2020-05-02 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599E9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5425T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_482100
 2020-05-02 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599E8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T G15372A C18877T A23403G C24138Y G25563T G25634T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482103
 2020-05-02 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599ECB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5425T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_482399
 2020-05-02 2020-07-03
 United States hCoV-19/USA/OR-PROV-137/2020
 C241T C1059T C3037T C14408T C18086T A23403G G25563T A26528T A28492T

EPI_ISL_482400
 2020-05-02 2020-07-03
 United States hCoV-19/USA/OR-PROV-139/2020
 C241T AAGTCATTT686- C3037T T4765C C6312T C11563T G14209T C14408T C17678T C18877T A23403G G25563T C28770T C29675T

EPI_ISL_482401
 2020-05-02 2020-07-03
 United States hCoV-19/USA/OR-PROV-143/2020
 C241T C3037T C10626T C14408T A23403G GGG28881AAC

EPI_ISL_482402
 2020-05-02 2020-07-03
 United States hCoV-19/USA/OR-PROV-144/2020
 C241T C3037T C14408T G20980A A23403G

EPI_ISL_482403
 2020-05-02 2020-07-03
 United States hCoV-19/USA/OR-PROV-145/2020
 C241T C3037T C6701T C14408T A23403G C27630T GGG28881AAC

EPI_ISL_482404
 2020-05-02 2020-07-03
 United States hCoV-19/USA/OR-PROV-146/2020
 C241T C1059T C3037T C11916T C14408T A23403G C25466T G25563T G28027T G29742T

EPI_ISL_482405
 2020-05-02 2020-07-03
 United States hCoV-19/USA/OR-PROV-147/2020
 C241T C1059T C3037T C14322T C14408T C18086T A23403G G25563T A26528T A28492T

EPI_ISL_484366
 2020-05-02 2020-07-08
 United Kingdom hCoV-19/England/NOTT-1122D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487527
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B2BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T A1699G C3037T C6361T C14408T C19066A A23403G C25797T C27577T C27641T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487531
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B39C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G9190K C14408T A23403G G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487532
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B2CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10556Y C14408T A23403G GGG28881AAC C29013T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487538
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T A1699G C3037T C14408T G14446A C19066A A23403G C25797T C27641T C28253Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487560
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C14408T A23403G G25563T C26789Y G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487592
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B3F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487608
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6308C G11071T G11083T C14408T T19839C A23403G C26078T C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487620
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B2DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174T C241T C3037T G6352T G12202T C14408T C17249T G17722T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_487624
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9962T C14408T C19170T G19509A C22536T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487674
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487683
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3881G C14408T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487751
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T G5629T C10798A C13862T C14408T C21846T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487800
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G448K C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487920
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489330
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-1000B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10594T C14408T G17325A A17342G A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489331
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FFF43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A23902T T24565A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489343
 2020-05-02 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-1002FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G713T C3037T G5012T C14408T T22714C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491941
 2020-05-02 2020-07-17
 Ecuador hCoV-19/Ecuador/USFQ-133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C3037T C12915T C14408T A20268G A23403G

EPI_ISL_492836
 2020-05-02 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C0E43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T T11638C C14408T A23403G C27847T GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492866
 2020-05-02 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C0D55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6336T C7063Y T11638C C14408T A23403G G25135T A27872T AG28877TC GGG28881AAC G29090K C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492881
 2020-05-02 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C0F9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T C14408T C21691T A23403G C24844T C25047T G28086T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493519
 2020-05-02 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E5AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11626T C14408T T22312G A23403G G26450T C28744T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493521
 2020-05-02 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E5D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6768G G7798T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493526
 2020-05-02 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E72E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9857T C14408T A23403G G24390T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493635
 2020-05-02 2020-07-21
 United Kingdom hCoV-19/England/PORT-2D0007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6982T C14408T C15324T A23403G C25433T GCTGCTGAGGCTTCTA29024T C29546T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494490
 2020-05-02 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1457T C3037T T11857C C14408T C19662T A20268G A23403G T24076C C28854T

EPI_ISL_495442
 2020-05-02 2020-07-22
 Turkey hCoV-19/Turkey/KU-032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C7765T C8326T C13517T C14408T C17690T C18877T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_500965
 2020-05-02 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500975
 2020-05-02 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1063B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C17004T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500985
 2020-05-02 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T83C A187G C241T C3037T T12436C C14408T C17339Y T23371Y A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501018
 2020-05-02 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G713T C3037T C6040T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501020
 2020-05-02 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-10636A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T G260A C3037T T8473C C14408T C19763T A23403G T26084C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501028
 2020-05-02 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-10635B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20707M A23403G C26058Y G26709K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501030
 2020-05-02 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-10634C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5719C G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501050
 2020-05-02 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G713T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501051
 2020-05-02 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501069
 2020-05-02 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1063F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C14583T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507116
 2020-05-02 2020-08-03
 United Kingdom hCoV-19/England/NORT-29A731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6133G G9479T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507117
 2020-05-02 2020-08-03
 United Kingdom hCoV-19/England/NORT-29A740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507231
 2020-05-02 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11126S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C9700T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_507232
 2020-05-02 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11142S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C5144T A9204C C11020T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_507240
 2020-05-02 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11168S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507241
 2020-05-02 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11172S/2020
 ATTAAAGGTTTA1- C241T C958T C3037T C14408T A23403G G27415T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_507242
 2020-05-02 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11183S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C8619T C14408T A23403G C28102T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507243
 2020-05-02 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11184S/2020
 ATT1- C241T G1957T C3037T T12496C C14408T A23403G GGG28881AAC G29449T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507244
 2020-05-02 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11188S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T17694C A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507249
 2020-05-02 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11271S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C4810T C14408T T17694C G19252A A23403G C28313T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_507250
 2020-05-02 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11273S/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T T17694C A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507251
 2020-05-02 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11275S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4810T C14408T T17694C A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507253
 2020-05-02 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11299S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8290T C14408T A23403G T25558C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_508365
 2020-05-02 2020-08-04
 India hCoV-19/India/IK36/2020
 ATTAAAGGTTTATACCTTCCC1- T25G C241T C3037T C14408T C17676T A23403G G28221T G29868A

EPI_ISL_508444
 2020-05-02 2020-08-04
 India hCoV-19/India/S35/2020
 ATTAAAGGT1- C241T C3037T C14408T A16474G A23403G G25785T -29849A C29854A -29860A G29862A TG29867AA

EPI_ISL_508446
 2020-05-02 2020-08-04
 India hCoV-19/India/S38/2020
 ATTAAAGG1- G1796A A2956G C6312A C6606T C9286T G11083T C13730T C19524T C23929T C25267T C26846T C28311T

EPI_ISL_515410
 2020-05-02 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0145/2020
 ATTAAA1- C241T C1059T C1473T C3037T C14408T A23403G G25563T

EPI_ISL_515411
 2020-05-02 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0146/2020
 ATT1- C241T C1059T C1473T C3037T C6525T C14408T T22222G A23403G G25563T

EPI_ISL_520663
 2020-05-02 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L104447095/2020
 C8782T G11230T T28144C G28167A G28878A G29648A G29706T G29742A

EPI_ISL_520742
 2020-05-02 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L920716500/2020
 C884T G1397A T5491C G8653T G11083T C16173T A19073G T22690C G27915T T28688C C29077T G29717T G29742T

EPI_ISL_521903
 2020-05-02 2020-08-25
 Australia hCoV-19/Australia/VIC2006/2020
 ATTAAAGGT1- C884T G1397A G8653T G11083T G16072A A19073G G23224T G27915T T28688C C29077T G29239A C29732A G29742T

EPI_ISL_526515
 2020-05-02 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5835T G6461T C14408T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526545
 2020-05-02 2020-09-01
 United Kingdom hCoV-19/England/20192146704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T G636K A2480G C2558T C4358Y T4922Y G6341K G9923A G11083T C14805T C21846Y C21997Y G26144T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527688
 2020-05-02 2020-09-04
 United States hCoV-19/USA/MN-CDC-6265/2020
 C241T C1059T C3037T G14008A C14408T C17339T C17676T C22227T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528413
 2020-05-02 2020-09-07
 United Kingdom hCoV-19/England/20189182904/2020
 ATTA1- C241T C1469T C3037T C7528T T7976C C8092T G10870T C14408T A23403G G28809A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_528692
 2020-05-02 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/2/2020
 C241T G428A T2950G C3037T C8389T C9096T C14408T T21775G A23403G GGG28881AAC

EPI_ISL_528934
 2020-05-02 2020-09-09
 Italy hCoV-19/Italy/LOM-IZSGC-TE30933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C3037T C14408Y A23403G GGG28881AAC AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_530084
 2020-05-02 2020-09-10
 Spain hCoV-19/Spain/MD-LP87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530201 MT997723
 2020-05-02 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C14408T A23403G G24368T G25563T C26801T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_534315
 2020-05-02 2020-09-13
 Brazil hCoV-19/Brazil/SP-318/2020
 ATTAAAGGTTTATACCTTCCC1- A22T G24A C241T C2388T G2468A G2971T C3037T C14408T A19476G A23403G T27299C GGG28881AAC T29148C CT29857TC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_534316
 2020-05-02 2020-09-13
 Brazil hCoV-19/Brazil/SP-321/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C7000T C12053T C14408T C23315T A23403G G25088T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_534332
 2020-05-02 2020-09-13
 Spain hCoV-19/Spain/MD-HLP-105-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3045T C14408T C15141T C20259T A20268G A23403G T27205- C29686T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534801
 2020-05-02 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2C18/2020
 C241T C3037T C14408T G19072T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_534805
 2020-05-02 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2CBE/2020
 C241T C3037T T4885C C14408T G19072T A23403G GGG28881AAC

EPI_ISL_535005
 2020-05-02 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4CCB/2020
 C241T C3037T C14408T A23403G T23425C C23525T C26801T GGG28881AAC

EPI_ISL_535011
 2020-05-02 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4D5F/2020
 C241T C3037T G3431T A4764G C14408T T18398C A23403G G24781T T26324C G28580A GGG28881AAC C29708T

EPI_ISL_536400
 2020-05-02 2020-09-15
 United Kingdom hCoV-19/cat/England/CVR-Cat2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3122T C14408T A22330C A23403G T25236Y G25987T C27046T C28312T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536501
 2020-05-02 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-102/2020
 TT2AA G7A C241T C3037T C4002T G10097A C13536T C14408T C17436T A23403G C23731T G27478T GGG28881AAC G29179T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536502
 2020-05-02 2020-09-16
 Peru hCoV-19/Peru/CAL-INS-103/2020
 ATTAAAG1- C241T C3037T C14408T A20268G A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536503
 2020-05-02 2020-09-16
 Peru hCoV-19/Peru/CAL-INS-104/2020
 ATTAAA1- C241T C3037T C4002T T4092G G10097A G11083T C13536T C14408T A23403G C23731T A23902C G27478T GGG28881AAC G29179T G29554T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536504
 2020-05-02 2020-09-16
 Peru hCoV-19/Peru/CAL-INS-105/2020
 ATTAAAG1- C241T C3037T C4002T G10097A C13536T C14408T G17151A A23403G C23731T G27478T GGG28881AAC G29179T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_537223
 2020-05-02 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2A0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21784C A22004G A22253T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537231
 2020-05-02 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2A66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T G6622T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537545
 2020-05-02 2020-09-16
 United States hCoV-19/USA/CA-UCLA-24/2020
 ATTAAAGGTTTATA1- C241T C379A C1059T C3037T C14408T A23403G C24237T G25563T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_540421 MW039234
 2020-05-02 2020-09-21
 United States SARS-CoV-2/human/USA/WY-WYPHL-20011618/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T T29131C AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_542674
 2020-05-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T G7936T C8782T C8950T G12478A T18736C G21051A C24034T C25433T T26729C T26972C G28077C T28144C C28896G C29451T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542677
 2020-05-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A20503G A23403G G25563T C26464T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542678
 2020-05-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C20368T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542703
 2020-05-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T2158C C3037T T6143C C14408T C16260T T17781C A23403G G25563T G27948T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542719
 2020-05-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A T27212C G27561T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542722
 2020-05-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T9853C C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542725
 2020-05-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542726
 2020-05-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T2158C C3037T T6143C C14408T C16260T T17781C A23403G G25563T G27948T C28821A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_542738
 2020-05-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542749
 2020-05-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T A11430G C14408T C19813T A23403G C24897T G25563T C27964T AAAA29900-

EPI_ISL_542756
 2020-05-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5230T C14408T C20762T A23403G G25563T C28236T T29404C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542760
 2020-05-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10202T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542765
 2020-05-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C6040T C8782T C8950T G12478A T18736C C21998T G28077C T28144C C28896G C29451T A29700G AAAAAAAAAA29894-

EPI_ISL_542888
 2020-05-02 2020-09-23
 United States hCoV-19/USA/TX-HMH-1875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568969
 2020-05-02 2020-10-02
 France hCoV-19/France/IHU-0798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T G9479T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT510700
 2020-05-02 2020-05-25
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC007/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C5284T C14408T A23403G G25563T C28849T G29744A GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825A

MT810717
 2020-05-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1314-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T T11857C C14408T C19662T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873063
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01137/2020
 AT1- C241T C1348T C2416T C3037T C14408T A23403G G25563T A25980T G26233T G28378T

MT873083
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01120/2020
 ATTAA1- C241T C3037T G4298A T9952A C14408T A23403G C28603T G28899T

MT873103
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01126/2020
 A1- C241T C3037T C14408T A23403G C25916T T27299C GGG28881AAC T29148C C29769T

MT873113
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00931/2020
 ATTA1- C241T C2416T C2453T C3037T C14408T T14508C A20481G C21587T A23403G G25563T G26233T

MT873116
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00937/2020
 A1- C241T C3037T C13862T C14408T G19816T A23403G C25728T C28836T

MT873127
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01141/2020
 ATTAAA1- C241T C1059T C3037T C14408T G21123T A23403G G25563T C27964T

MT873148
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00923/2020
 ATTAAA1- C241T C1059T C3037T A4905G C14408T A23403G G25563T G27955T

MT873150
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00946/2020
 ATTAAA1- C241T C2416T C3037T C14036T C14408T TTA20339- A23403G G25563T

MT873151
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00922/2020
 ATTA1- C241T A2104G C3037T C14408T T21656C A21993T A23403G G25244C C28603T G28899T

MT873169
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01127/2020
 AT1- C241T A2104G C3037T C14408T T21656C A21993T A23403G G25244C C28603T G28899T

MT873210
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00954/2020
 ATTA1- C241T C1059T C1191T C3037T G3892T C14408T A17056G A23403G G25563T

MT873335
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01132/2020
 ATTAAA1- C241T C3037T C13730T C14408T A23403G G25429T C26395T C28849T A29903-

MT873372
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00947/2020
 ATTAAA1- C241T C1059T C3037T C10851T C14408T G19231A C23202T A23403G G23608T G24781T C25511T G25563T

MT873375
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00926/2020
 ATTAAA1- C241T C2416T C2469T C3037T A5725G C14408T C16887T A23403G C24096A G25563T C25672A

MT873376
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01108/2020
 ATTAAA1- C241T C823T C1059T C3037T T12874C C14408T A23403G G25563T G29402T

MT873396
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01121/2020
 AT1- C20T C241T C1059T C3037T C10335T C14408T A23403G G25563T C28905T

MT873445
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01149/2020
 ATTAAA1- C241T C1059T C3037T C14408T G21123T A23403G G25563T C27964T

MT873476
 2020-05-02 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01140/2020
 ATTAA1- C241T C1059T C3037T C14408T G21123T A23403G G25563T C27964T

MT967941
 2020-05-02 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6265/2020
 C241T C1059T C3037T G14008A C14408T C17339T C17676T C22227T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW030257
 2020-05-02 2020-09-22
 Peru SARS-CoV-2/human/PER/covper026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T T4092G G10097A G11083T C13536T C14408T A23403G C23731T A23902C G27478T GGG28881AAC G29179T G29554T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030258
 2020-05-02 2020-09-22
 Peru SARS-CoV-2/human/PER/covper027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C13536T C14408T G17151A A23403G C23731T G27478T GGG28881AAC G29179T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030259
 2020-05-02 2020-09-22
 Peru SARS-CoV-2/human/PER/covper028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C466T C3037T C4002T C7932T G10097A C13536T C14408T A23403R C23731T G26727T G28242T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030260
 2020-05-02 2020-09-22
 Peru SARS-CoV-2/human/PER/covper029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C13536T C14408T C17676T A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030261
 2020-05-02 2020-09-22
 Peru SARS-CoV-2/human/PER/covper030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T G4657T C5907T C14408T C15277T G19872T A21917G A23403G C25872T A26530G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_436898
 2020-05-03 2020-05-07
 United States hCoV-19/USA/WI-GMF-02294/2020
 T13W C241T C1059T C1314T C3037T C14408T C20457T G22349T A23403G G25563T A27821G

EPI_ISL_436899
 2020-05-03 2020-05-07
 United States hCoV-19/USA/WI-GMF-02314/2020
 C241T C715T C1059T C3037T T3741C T9067C C11916T C14408T A23403G A23586G G25563T

EPI_ISL_447030 MT496976
 2020-05-03 2020-05-16
 India SARS-CoV-2/human/IND/GBRC56a/2020
 C241T C3037T C8683T G12806A C14408T G21600T A23403G G28845T

EPI_ISL_447031 MT496977
 2020-05-03 2020-05-16
 India SARS-CoV-2/human/IND/GBRC56b/2020
 C241T C3037T C14408T A23403G

EPI_ISL_447033 MT496980
 2020-05-03 2020-05-16
 India SARS-CoV-2/human/IND/GBRC58/2020
 C241T C2836T C3037T C14408T C18877T G21724T C22444T A23403G G25563T C26735T G28083T C28854T

EPI_ISL_447035 MT496982
 2020-05-03 2020-05-16
 India SARS-CoV-2/human/IND/GBRC60/2020
 C241T C2836T C3037T C14408T C18877T C22444T C23277T A23403G G25563T C26735T C28854T

EPI_ISL_447036 MT496984
 2020-05-03 2020-05-16
 India SARS-CoV-2/human/IND/GBRC61/2020
 C241T C3037T ATAGTT6510- C14408T C18877T A23403G G25563T C26735T C26895T C29177T

EPI_ISL_447037 MT496988
 2020-05-03 2020-05-16
 India SARS-CoV-2/human/IND/GBRC62/2020
 C241T C3037T G9802T T11107C C14408T C18877T A23403G G24872T G25563T C26735T

EPI_ISL_447038 MT496989
 2020-05-03 2020-05-16
 India SARS-CoV-2/human/IND/GBRC63/2020
 C241T C1191T C3037T C14408T T21568A A23403G

EPI_ISL_447039 MT496992
 2020-05-03 2020-05-16
 India SARS-CoV-2/human/IND/GBRC64/2020
 C241T C2836T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C27612T C28854T

EPI_ISL_447040 MT481895
 2020-05-03 2020-05-16
 India SARS-CoV-2/human/IND/GBRC65a/2020
 C241T C2836T C3037T C14408T C16887T C18877T G22093T C22444T A23403G G25563T G25785T C26735T C28854T

EPI_ISL_447041 MT481896
 2020-05-03 2020-05-16
 India SARS-CoV-2/human/IND/GBRC65b/2020
 C241T C3037T C14408T C16887T G22093T C22444T A23403G G25563T C26735T

EPI_ISL_447042 MT496979
 2020-05-03 2020-05-16
 India SARS-CoV-2/human/IND/GBRC66/2020
 C241T C3037T C14408T G16853T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_447043 MT496983
 2020-05-03 2020-05-16
 India SARS-CoV-2/human/IND/GBRC67a/2020
 C241T C3037T G12149A C14408T G16078A C18877T T20151C C22444T G23311T A23403G G25563T C26735T C28854T

EPI_ISL_447044 MT496985
 2020-05-03 2020-05-16
 India SARS-CoV-2/human/IND/GBRC67b/2020
 C241T C3037T C14408T G16078A C18877T T20151C C22444T G23311T A23403G G25563T C26735T C28854T

EPI_ISL_447045 MT496986
 2020-05-03 2020-05-16
 India SARS-CoV-2/human/IND/GBRC68/2020
 C241T C2836T C3037T C6402T C14408T C18877T C22444T A23403G G25563T C26735T G28631A C28854T

EPI_ISL_447549 MT481902
 2020-05-03 2020-05-17
 India SARS-CoV-2/human/IND/GBRC88a/2020
 C218T C241T C3037T C14408T A14673G A23403G

EPI_ISL_447550 MT481903
 2020-05-03 2020-05-17
 India SARS-CoV-2/human/IND/GBRC88b/2020
 C241T C3037T C14408T A14673G A23403G C27741T

EPI_ISL_448037
 2020-05-03 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1ADB5E/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448039
 2020-05-03 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1ADB7C/2020
 C241T G1069A C3037T G6368A G7037T C14408T A23403G GGG28881AAC

EPI_ISL_448040
 2020-05-03 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1ADB8B/2020
 C241T C1059T C1437T C3037T T13006C C14408T A23403G A24070T G25563T C25688T C27945T

EPI_ISL_448041
 2020-05-03 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1ADB9A/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448364
 2020-05-03 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9D7F/2020
 ATTAAA1- C241T C3037T A9204G C14408T C17010T A23403G G27709T GGG28881AAC C29281T

EPI_ISL_448374
 2020-05-03 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9E6D/2020
 ATT1- C241T C3037T C14408T A23403G C25568Y G28077T GGG28881AAC

EPI_ISL_448384
 2020-05-03 2020-05-19
 United Kingdom hCoV-19/England/NORW-E9FF1/2020
 ATTAA1- C241T C3037T C8367T C14408T C17304T C19524T A23403G G25455T GGG28881AAC C29774Y

EPI_ISL_448387
 2020-05-03 2020-05-19
 United Kingdom hCoV-19/England/NORW-EA057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C829T C3037T G6669T C14408T G22992A A23403G C26270T GGG28881AAC

EPI_ISL_449034
 2020-05-03 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7421/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1457Y C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_449035
 2020-05-03 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7430/2020
 ATT1- C241T C3037T G9479T C14408T C21034T A23403G GGG28881AAC

EPI_ISL_449036
 2020-05-03 2020-05-19
 United Kingdom hCoV-19/England/NORW-E744F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C8655T T11313C C14408T A23403G C27752T GGG28881AAC C29803A

EPI_ISL_449057
 2020-05-03 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8655T T11313C C14408T A23403G GGG28881AAC C29803A

EPI_ISL_450344
 2020-05-03 2020-05-20
 Bangladesh hCoV-19/Bangladesh/BARJ_CVASU_CTG_517/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C18877T C22444T A23403G G25494T G25563T C26735T TCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCATGACGTTCGTGTTGTTTTAGATTTCA27910- C28854T G29843C AT29866- CAAA29870TCGG A29876C AAA29878GCG AA29882CG AA29885GT AAA29888GGG AAAAAAAAAA29894-

EPI_ISL_451155 MT509494
 2020-05-03 2020-05-23
 India SARS-CoV-2/human/IND/GBRC110/2020
 C241T T1592C C3037T C4084T C14408T C17850T C18508T A23403G

EPI_ISL_451158 MT509656
 2020-05-03 2020-05-23
 India SARS-CoV-2/human/IND/GBRC113/2020
 C241T C3037T C4084T C14408T A23403G

EPI_ISL_451159 MT509657
 2020-05-03 2020-05-23
 India SARS-CoV-2/human/IND/GBRC114/2020
 G4444T C6310A C6312A G11083T T12757C C13730T C19524T C23929T C28311T

EPI_ISL_451160 MT509659
 2020-05-03 2020-05-23
 India SARS-CoV-2/human/IND/GBRC115/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_451162 MT509651
 2020-05-03 2020-05-23
 India SARS-CoV-2/human/IND/GBRC117/2020
 C241T G388A C2836T C3037T C12076T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_453441
 2020-05-03 2020-05-27
 United Kingdom hCoV-19/England/LIVE-9F26A/2020
 C241T C3037T C7735T C14408T C15237T A23403G C24904T GGG28881AAC G29468T

EPI_ISL_453627
 2020-05-03 2020-05-27
 United Kingdom hCoV-19/England/NOTT-1110CF/2020
 C241T C3037T C4002T G10097A G12514T C13536T C14408T A23403G A23524C C23731T GGG28881AAC

EPI_ISL_453628
 2020-05-03 2020-05-27
 United Kingdom hCoV-19/England/NOTT-1110DE/2020
 C241T C274T C3037T C6312A A10948G A12075G C14408T A23403G C25499T G25552T GGG28881AAC

EPI_ISL_455664
 2020-05-03 2020-06-01
 India hCoV-19/India/S42/2020
 C106T C241T C3037T C12439T C13585T C14408T A23403G G29543T

EPI_ISL_455667
 2020-05-03 2020-06-01
 India hCoV-19/India/S46/2020
 C106T C241T C3037T C12439T C13585T C14408T A23403G G29543T

EPI_ISL_455669
 2020-05-03 2020-06-01
 India hCoV-19/India/S49/2020
 C241T C335T C3037T C11572T C14408T G15451A G22343A A23403G T27207C A29622T

EPI_ISL_455670
 2020-05-03 2020-06-01
 India hCoV-19/India/S50/2020
 C241T C1191T C3037T C11103T C14408T G15451A G22343A A23403G G23868T

EPI_ISL_455671
 2020-05-03 2020-06-01
 India hCoV-19/India/S51/2020
 G1462T C7945T C8782T T10339C G22468T C26681T T28144C G28878A G29742A

EPI_ISL_455672
 2020-05-03 2020-06-01
 India hCoV-19/India/S52/2020
 C241T C3037T C14408T C18118A A23403G C29272T

EPI_ISL_455674
 2020-05-03 2020-06-01
 India hCoV-19/India/S55/2020
 C106T C241T C3037T C12439T C13585T C14408T A23403G G29543T

EPI_ISL_455675
 2020-05-03 2020-06-01
 India hCoV-19/India/S56/2020
 G94T C241T C3037T C8950T C14408T A23403G G23821A G26730T

EPI_ISL_455676
 2020-05-03 2020-06-01
 India hCoV-19/India/S58/2020
 C106T C241T C3037T C12439T C13585T C14408T A23403G G29543T

EPI_ISL_456672
 2020-05-03 2020-06-02
 United Kingdom hCoV-19/England/BIRM-5F363/2020
 C241T A1423C C3037T C5144T C10702T C14408T C22570T A23403G GGG28881AAC

EPI_ISL_456798
 2020-05-03 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T C23188T A23403G G27626C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_457253
 2020-05-03 2020-06-02
 United Kingdom hCoV-19/England/EXET-136B96/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457311
 2020-05-03 2020-06-02
 United Kingdom hCoV-19/England/NORT-28B302/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457413 LR814193
 2020-05-03 2020-06-02
 United Kingdom NORW-EB28D
 AT1- C241T C3037T C14408T A23403G A23570T G26062T GGG28881AAC

EPI_ISL_457414 LR821898
 2020-05-03 2020-06-02
 United Kingdom NORW-EB29C
 AT1- C241T C313T G1820A C3037T C6541T C14408T A23403G G26918T GGG28881AAC A29242G

EPI_ISL_457419 LR814032
 2020-05-03 2020-06-02
 United Kingdom NORW-EB33F
 ATTAAAGGTTTATAC1- C241T C3037T G4908R G10396T C14408T A23403G A23570T G26062T GGG28881AAC

EPI_ISL_457420 LR814206
 2020-05-03 2020-06-02
 United Kingdom NORW-EB34E
 ATTAAAGGTTT1- C241T C1457T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_457593
 2020-05-03 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C2671/2020
 C241T C3037T C7119T G10097A C14408T A23403G C23731T C25000T G28580T GGG28881AAC

EPI_ISL_457618
 2020-05-03 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C7454/2020
 C241T C3037T G10097A C11750T C13381T C14408T A23403G C23731T A23992T C25350T G28580T GGG28881AAC

EPI_ISL_457637
 2020-05-03 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C9A05/2020
 C241T C3037T A6526G G10097A C11750T C13381T C14408T A23403G C23731T A23992T G28580T GGG28881AAC

EPI_ISL_457647
 2020-05-03 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CB7C0/2020
 G188A C241T C3037T A11839G T13950C C14408T T19839C A23403G G25249T G25273T GGG28881AAC G29648C

EPI_ISL_458124
 2020-05-03 2020-06-03
 Oman hCoV-19/Oman/205033391/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T A6876G G10265A C14408T C16293T A23403G GGG28881AAC G29747T -29814AT A29818T T29820A A29827T TG29829AT T29832C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837TG

EPI_ISL_459913
 2020-05-03 2020-06-05
 India hCoV-19/India/MaxCov0010_CSIR-IGIB/2020
 C241T C313Y C3037T G3638A C3768T G3856K C6312M G7214K G11083K C13730Y C14074M C14408Y G14885R C19983T A23403R C25037M GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_460601
 2020-05-03 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20553/2020
 C241T C3037T C12469T T13534C C14408T C17474T C18877T A23403G A23586G G25563T C27092T C27526Y

EPI_ISL_460856
 2020-05-03 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T T19022C C20930T A23403G C27208T G29422T C29668T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460860
 2020-05-03 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C21914T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461075
 2020-05-03 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8130G T11638C C14408T A23403G C24865T C26408T T26419C C27769T GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461373
 2020-05-03 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461375
 2020-05-03 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461398
 2020-05-03 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462412
 2020-05-03 2020-06-08
 Singapore hCoV-19/Singapore/294/2020
 C1572T C6310A C6312A G11083T C13730T C17410T C19524T C23185T A23586R C23929T C26111A C28311T AAAAAAAAAAAA29892-

EPI_ISL_463526 MT642123
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1036/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463527 MT642186
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1037/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T A18671C A23403G C25466T G25563T G28027T G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463528 MT642097
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1038/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_463529 MT642314
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1039/2020
 A1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463530 MT642432
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1040/2020
 AT1- C241T G1210T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463531 MT642098
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1041/2020
 AT1- C241T C3037T A4197G T12232C C14408T G16813A A23403G T25783C GGG28881AAC C29119T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463532 MT642176
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1042/2020
 ATTAAA1- C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463533 MT642326
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1043/2020
 AT1- C241T C1059T C3037T C9281T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463534 MT642238
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1044/2020
 AT1- C241T C1059T C3037T C14408T T21363C A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463535 MT642403
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1045/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463536 MT642365
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1046/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T G5150A C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463538 MT642080
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1048/2020
 AT1- C241T A2161G C3037T C8782T C14408T C16376T C18877T A23403G G25563T G25907T A28458T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_463539 MT642127
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1049/2020
 AT1- C241T C337T C1204T G1747A C3037T C14408T C16289T A22595T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463588 MT642260
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1098/2020
 ATTAAAGGTTTAT1- C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463593 MT642273
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1103/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463604 MT642174
 2020-05-03 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1114/2020
 ATTAAAG1- C241T A2161G C3037T C4993T C14408T A15593G C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_465610
 2020-05-03 2020-06-11
 United Kingdom hCoV-19/England/20194041601/2020
 C241T G1914A C3037T C8078T C14408T T16456C C21639T A23403G

EPI_ISL_468078
 2020-05-03 2020-06-16
 Bangladesh hCoV-19/Bangladesh/CHRF_0010/2020
 C241T C3037T C14408T C15324T A23403G G23868T C24334T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_468473 MT628201
 2020-05-03 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1528/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_469290
 2020-05-03 2020-06-18
 Japan hCoV-19/Japan/Donner32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T AAGTCATTT686- C823T C3037T G11083K C12534T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469471
 2020-05-03 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C5E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469485
 2020-05-03 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C54A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C7843T C9438T C14408T T15254C A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469486
 2020-05-03 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C52C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C988T C3037T C7600T G8287T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469489
 2020-05-03 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C6ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_470791
 2020-05-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_470792
 2020-05-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470793
 2020-05-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_471989
 2020-05-03 2020-06-23
 United Kingdom hCoV-19/England/EXET-137852/2020
 C241T C3037T C14408T C15180T A23403G A27620G GGG28881AAC C29013T

EPI_ISL_472407
 2020-05-03 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111DD7/2020
 C241T C3037T C14408T A23403G C27046T GGG28881AAC G29779T

EPI_ISL_472429
 2020-05-03 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111F68/2020
 C241T C3037T T3598C C6312A C8660T C10626T A10948G G12917A C14408T A23403G C26010T GGG28881AAC

EPI_ISL_473315
 2020-05-03 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F14B/2020
 C241T C3037T C14408T C16428T A21405T A23403G GGG28881AAC

EPI_ISL_473316
 2020-05-03 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F15A/2020
 ATG1605- C5392T T9001C T26960C C27874T

EPI_ISL_473317
 2020-05-03 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F169/2020
 C241T C3037T C14408T C16428T A21405T A23403G GGG28881AAC

EPI_ISL_474164
 2020-05-03 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16436A/2020
 ATT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_475209
 2020-05-03 2020-06-23
 United States hCoV-19/USA/NE-11343/2020
 C241T C1059T C3037T C14408T C19488T TGG21294AAA C21622T A23403G T25036C AG25562TT

EPI_ISL_476104 LR824510 LR861064
 2020-05-03 2020-06-25
 Switzerland 140053
 C241T C2434T C3037T C14408T C16833Y A20268G C22347S A23403G C26022Y

EPI_ISL_476748
 2020-05-03 2020-06-25
 United States hCoV-19/USA/MN-MDH-1163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C539T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_476850
 2020-05-03 2020-06-26
 India hCoV-19/India/DRDE 2429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C344T C3037T C6312A T8022K G11083K C13730T C18687T C23929T C28311T A29406T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476999
 2020-05-03 2020-06-27
 Belgium hCoV-19/Belgium/rega-0503483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1835A C3037T A6276G C14408T C15324T A23403G G26450A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477659 MT679183
 2020-05-03 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G20991T A23403G G25563T C25585T C29870A

EPI_ISL_477661 MT679185
 2020-05-03 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0447/2020
 ATTAAAG1- C241T C1059T C3037T C14408T G20991T A23403G G25563T C25585T C29738T

EPI_ISL_479074
 2020-05-03 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1B49/2020
 C241T C3037T G9220A A10948G C11575T C14408T C14649T A23403G C27542T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_479076
 2020-05-03 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1B67/2020
 T13C C241T C1059T C1567T C3037T A6616G C14408T G18972T A23403G G24368T G25563T AA29902-

EPI_ISL_479512
 2020-05-03 2020-06-30
 India hCoV-19/India/NIV-19746/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480256
 2020-05-03 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV158/2020
 C203T GTTATG515- G1397A G1811A C2706T A3275C G11083T C13329T A17691G T17863C C18928T T22213C C22311A T28688C C29563T G29742T

EPI_ISL_480257
 2020-05-03 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV162/2020
 C241T C2113T C3037T C7765T C14408T T14700C C17690T C18877T A23403G G25563T

EPI_ISL_480258
 2020-05-03 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV163/2020
 C241T C3037T C3464T C5192T C12809T G14277T C14408T A23403G GGG28881AAC

EPI_ISL_480259
 2020-05-03 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV164/2020
 C241T C3037T C14408T T19839C A23403G C28292A GGG28881AAC

EPI_ISL_480261
 2020-05-03 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV168/2020
 C241T C3037T T9667C C14408T T19839C A23403G C25611A GGG28881AAC C29197T

EPI_ISL_480263
 2020-05-03 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV170/2020
 C241T C3037T C12809T C14408T C15279T A23403G GGG28881AAC G28895T

EPI_ISL_480899 MT704066
 2020-05-03 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0248/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T A4123G C14408T C18877T A23403G G25563T C28724T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480900 MT704067
 2020-05-03 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0249/2020
 ATTAAAGGTTTA1- C241T C1059T C2536T C3037T C14408T G16852T T21111C A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481770
 2020-05-03 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G10096A C14408T A23403G G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481848
 2020-05-03 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D53A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G6421T C7423T A7479G -11075TTT G11083T C14805T T17247C C20233T G21974T C25572T G26144T C28887T A29552G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481859
 2020-05-03 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3661T G5194A G10097A C14178T C14408T C21575T C23248T A23403G C23731T G28580T GGG28881AAC G29736C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481913
 2020-05-03 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G6421T C7423T A7479G G11083T C14805T T17247C C25572T G26144T C28887T A29552G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482001
 2020-05-03 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DBFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6040Y T7185Y C14408T A23403G G24040T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482069
 2020-05-03 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599D55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T T26129G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482078
 2020-05-03 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599D64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6327T C6573T C8543T C8655T C14408T G21123T A23403G C25521A C25528T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_482406
 2020-05-03 2020-07-03
 United States hCoV-19/USA/OR-PROV-148/2020
 C241T C3037T C7262T C11563T C14408T C15857T C18788T C18877T GAA20263ATT A23403G G24550A G25563T

EPI_ISL_482440
 2020-05-03 2020-07-03
 United States hCoV-19/USA/OR-PROV-197/2020
 C241T C3037T C14408T A20268G C21114T C23320T A23403G C29370G

EPI_ISL_483332
 2020-05-03 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0752-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T T3282C C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483333
 2020-05-03 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0753-IPL/2020
 ATTAAAGGTT1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_483415
 2020-05-03 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0923-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T T3282C C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483416
 2020-05-03 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0925-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_484286
 2020-05-03 2020-07-08
 United Kingdom hCoV-19/England/NORT-29C8C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CA222T C241T AAGTCATTT686- C1912T C3037T C14408T C18744T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484354
 2020-05-03 2020-07-08
 United Kingdom hCoV-19/England/NOTT-112204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9022C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486271 MT750447
 2020-05-03 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G6532T C14408T C18395T G18898T C21772T A23122R A23403G T25902W T25908W G25913S GGG28881AAC

EPI_ISL_486272 MT750448
 2020-05-03 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2020/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T T15669C A20268G A23122R A23403G T25902W T25908W G25913S G29734C

EPI_ISL_486391
 2020-05-03 2020-07-10
 Latvia hCoV-19/Latvia/026/2020
 C241T C3037T G12988T TG13575CT C14408T A23403G C25831T GGG28881AAC

EPI_ISL_487547
 2020-05-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B36F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T G20853K G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487555
 2020-05-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B3E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2833A C3037T C11036M C14408T C16289T A23403G G25429T C28383T T28688C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487577
 2020-05-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C14408T C15352T C22000T A23403G G26262T C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487611
 2020-05-03 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B3D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T C27110T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487774
 2020-05-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9180T C9223T C14408T T16791C C18807A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487881
 2020-05-03 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C12915T C14120T C14408T A20268G A23403G G27987T C28775T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488053
 2020-05-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-29D473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T C7926T A10323G C14408T A14671C C17550T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488116
 2020-05-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-29D3EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174C C241T C3037T G10097A T13216G C14408T C17119T A19960G C22530T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488124
 2020-05-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-29D3C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4276T C14408T C22858Y A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488160
 2020-05-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-29D446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489233
 2020-05-03 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-100087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5719C G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489271
 2020-05-03 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FD631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A314T C3037T C14408T C14676T A20268G A23403G T26715K G26720R C28854T C28868T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489327
 2020-05-03 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FFEFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10376T C14408T A23403G C26208T C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489340
 2020-05-03 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-100193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9967T A10323G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489355
 2020-05-03 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-100184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10376T C11259Y C14408T A23403G C26208T C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490581
 2020-05-03 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C1742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491169
 2020-05-03 2020-07-16
 Oman hCoV-19/Oman/B-6050/2020
 A1G TACCTTCCCA13C G24A C241T C313T C3037T C14408T G20275T A23403G G24998T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_492853
 2020-05-03 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C1167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3263G C9474T C14408T C21411Y C21691T A23403G C25047T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494485
 2020-05-03 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G626T C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T

EPI_ISL_494487
 2020-05-03 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T

EPI_ISL_494641
 2020-05-03 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1522/2020
 ATTAAAGGTTTATACC1- C241T C3037T G9224T C14408T G16741A C17012T A20268G A23403G C28854T

EPI_ISL_494669
 2020-05-03 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1580/2020
 ATTAAAGG1- C241T C3037T G9802T C14408T C17976T A20268G C22388T A23403G C28854T

EPI_ISL_495655 MT821776
 2020-05-03 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1480/2020
 ATTAAAGGTTTATACCTTC1- C241T C307T C1059T C3037T C12781T C14408T G16897T A23403G G25563T G28690T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495662 MT821777
 2020-05-03 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1487/2020
 ATTAAAGGTTTATACCT1- C241T C307T C1059T C3037T C12781T C14408T G16897T A23403G G25563T G28690T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_496586
 2020-05-03 2020-07-24
 India hCoV-19/India/NCCS_NR342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8956T C14408T A23403G C29870T

EPI_ISL_499801
 2020-05-03 2020-07-28
 United Kingdom hCoV-19/England/NORT-29D2F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C17463T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499803
 2020-05-03 2020-07-28
 United Kingdom hCoV-19/England/NORT-29D437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22785T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499804
 2020-05-03 2020-07-28
 United Kingdom hCoV-19/England/NORT-29D455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499805
 2020-05-03 2020-07-28
 United Kingdom hCoV-19/England/NORT-29D464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507118
 2020-05-03 2020-08-03
 United Kingdom hCoV-19/England/NORT-29A79B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1590A C3037T C14408T G18937A A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507233
 2020-05-03 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11144S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_507239
 2020-05-03 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11164S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T G4148A C14408T A23403G G27415T GGG28881AAC C29670T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507255
 2020-05-03 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII11311S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A12886G C14408T T15338C A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_508366
 2020-05-03 2020-08-04
 India hCoV-19/India/IK38/2020
 ATTAAAGGTTTATACCT1- C66T C241T C3037T C8860T C14408T A23403G G28221T G29557T G29868A

EPI_ISL_508367
 2020-05-03 2020-08-04
 India hCoV-19/India/IK39/2020
 A4- C241T G1857A C3037T C9967T C14408T A23403G G26109T G29868A

EPI_ISL_508452
 2020-05-03 2020-08-04
 India hCoV-19/India/S57/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C106T C241T C3037T C12439T C13585T C14408T A23403G G29543T TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_509844 MT846528
 2020-05-03 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25624T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510549
 2020-05-03 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2211/2020
 A4C C241T C3037T A6466G A6869T G7675T A8658G C14408T T22156C A23403G G28396A C29013T

EPI_ISL_513896 MW036060
 2020-05-03 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2521/2020
 ATTA1- C241T C3037T C9430T C14408T G19969A T20048Y A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515412
 2020-05-03 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0147/2020
 ATT1- C241T C3037T C8950T C14408T A20268G G21468T A23403G C28854T G28985T C29724T C29769T

EPI_ISL_515413
 2020-05-03 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C379A C1059T C3037T G9652T C11102T G13570T CC14407TT C19185T A23403G G25563T C29835T

EPI_ISL_523433
 2020-05-03 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1594T G2585A C3037T C9996T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_526933
 2020-05-03 2020-09-02
 Colombia hCoV-19/Colombia/105161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5915C C10507T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530085
 2020-05-03 2020-09-10
 Spain hCoV-19/Spain/MD-LP88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530200 MT997722
 2020-05-03 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T C22687T A23403G G25563T C27964T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_534318
 2020-05-03 2020-09-13
 Brazil hCoV-19/Brazil/SP-325/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G13975T C14408T A23403G G24697T G25088T GGG28881AAC T29848A A29850T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_534774
 2020-05-03 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2832/2020
 C241T C3037T C14408T G19072T A23403G GGG28881AAC

EPI_ISL_534913
 2020-05-03 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3DF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- T77W C241T C3037T C14408T G19072T A23403G GGG28881AAC A29889W A29895R AAAA29900-

EPI_ISL_535009
 2020-05-03 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4D31/2020
 G174A C241T C2416T C3037T C8352T A11728G C14408T C14786T G20578T A23403G G25563T C28435T

EPI_ISL_535015
 2020-05-03 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4DAA/2020
 C241T C3037T C14408T G19072T A23403G GGG28881AAC

EPI_ISL_535017
 2020-05-03 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4DE6/2020
 C241T C3037T C3966T C9333T C14408T A23403G G26153T G27238T G28077T

EPI_ISL_537212
 2020-05-03 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2A39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G704A C3037T A3060G C14408T A23403G T24505C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537273
 2020-05-03 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2A84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13514T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540435 MW021512
 2020-05-03 2020-09-21
 United States SARS-CoV-2/human/USA/VA-CDC-8005/2020
 C241T C1059T C3037T C11916T C14408T C18998T C20823T A23403G G25563T G25947C G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_542691
 2020-05-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-1389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1570C C3037T C4113T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542730
 2020-05-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-1452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C16308T C16694T A23403G G25563T A25986T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542772
 2020-05-03 2020-09-23
 United States hCoV-19/USA/TX-HMH-1522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4931A C6990T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568964
 2020-05-03 2020-10-02
 France hCoV-19/France/IHU-0788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T G9479T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568966
 2020-05-03 2020-10-02
 France hCoV-19/France/IHU-0791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T G9479T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT810712
 2020-05-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1301-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G626T C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810714
 2020-05-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1303-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810842
 2020-05-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1522-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G9224T C14408T G16741A C17012T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810870
 2020-05-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1580-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G9802T C14408T C17976T A20268G C22388T A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811345
 2020-05-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0752-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T T3282C C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811346
 2020-05-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0753-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811422
 2020-05-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0923-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T T3282C C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811423
 2020-05-03 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0925-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873052
 2020-05-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00976/2020
 C241T C1059T C3037T C14408T C16260T C18555T C19859T G21604T A23403G G25563T C28821A

MT873251
 2020-05-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00977/2020
 ATTA1- C241T C3037T C3885T C14408T T20439C C23086T A23403G C25714T C25916T T27299C GGG28881AAC T29148C C29769T

MT873264
 2020-05-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01196/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T C19560T G19962A A23403G G25563T

MT873280
 2020-05-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00958/2020
 ATTAAA1- C241T C2416T C3037T A5431G T10216C C14408T A23403G G25563T C25916T G26233T

MT873381
 2020-05-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00959/2020
 ATTA1- C241T C2416T C3037T T10216C C14408T A23403G G25563T G26233T C29451T

MT873463
 2020-05-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00957/2020
 ATTAAA1- C241T C2416T C3037T T10216C C14408T A23403G G25563T G26233T

MT873499
 2020-05-03 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00978/2020
 ATTAA1- C241T C3037T C3885T C14408T T20439C C23086T A23403G C25714T C25916T T27299C GGG28881AAC T29148C C29769T

EPI_ISL_436900
 2020-05-04 2020-05-07
 United States hCoV-19/USA/WI-GMF-02381/2020
 C241T C936T C3037T C14408T C16830T AA21550MW A23403G A24221G A25381M T27553G C28603T C28610A TAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29826-

EPI_ISL_444486 MT467263
 2020-05-04 2020-05-13
 India SARS-CoV-2/human/IND/GBRC55/2020
 C241T C2836T C3037T C6402T C14408T C18877T G21724T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_445118
 2020-05-04 2020-05-15
 United States hCoV-19/USA/CA-SR0217/2020
 C241T C1457T C3037T C14408T A20268G C22713T A23403G T24076C C28854T

EPI_ISL_447046 MT496987
 2020-05-04 2020-05-16
 India SARS-CoV-2/human/IND/GBRC69/2020
 C241T C2836T C3037T C14408T C18441T C18877T G21724T C22444T G22973C A23403G G25563T C26735T C28854T

EPI_ISL_448012
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD7F0/2020
 A7479G G11083T C14805T T17247C C25572T G26144T C28887T

EPI_ISL_448042
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1ADBA9/2020
 A136G C241T AAGTCATTT686- C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_448043
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1ADBB8/2020
 C241T C1170T C3037T C11379T C14408T C16178T A23403G G27651C GGG28881AAC

EPI_ISL_448044
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1ADBC7/2020
 C241T C3037T C14408T A23403G C26447T G27281T GGG28881AAC

EPI_ISL_448046
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1ADBE5/2020
 C241T C3037T C14408T A23403G G24872A GGG28881AAC

EPI_ISL_448047
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1ADBF4/2020
 C241T C3037T C4002T G9269A G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_448051
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AE391/2020
 C241T C313T T1750C C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448059
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AEBE4/2020
 C241T C3037T T4149C A8031G C12525T C14408T A23403G G25599T GGG28881AAC C29353T

EPI_ISL_448060
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AEBF3/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29254T

EPI_ISL_448063
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AEC2D/2020
 C241T C1077A C3037T G5008A A6486G C13730T C14408T A23403G G25429T

EPI_ISL_448064
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AEC4B/2020
 C241T C1943T C3037T C3093T C3992T C9438T G10262A C14408T T19839C C21575T C22995T A23403G A27669G GGG28881AAC

EPI_ISL_449037
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E747C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7267T C9165T C14408T A23403G G26062T C28868T GGG28881AAC

EPI_ISL_449039
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E749A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G3567A C14408T T23047C A23403G GGG28881AAC

EPI_ISL_449040
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E74A9/2020
 ATTAAAGGTTT1- C36T C241T C3037T C12915T C14408T A20268G G21255T A23403G

EPI_ISL_449042
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E74E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T A1842G C3037T C8367T T8767C C10965T C14408T C19524T A23403G GGG28881AAC

EPI_ISL_449044
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7500/2020
 A1- C241T C3037T C6040T C12915T C14408T A20268G G21255T A23403G G28781T

EPI_ISL_449045
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E751F/2020
 C36T C241T C3037T C12915T C14408T A20268G G21255T A23403G

EPI_ISL_449046
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E753D/2020
 ATT1- C36T C241T C3037T C12915T C14408T A20268G G21255T T23031C A23403G

EPI_ISL_449047
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E754C/2020
 ATTAAAGGTT1- C36T C241T C3037T A9701T C12915T C14408T A20268G G21255T A23403G

EPI_ISL_449048
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E755B/2020
 ATTAAAGG1- C241T C3037T G3485R A4198C C7011T C12915T C14408T A20268G G21255T A23403G C24909M

EPI_ISL_449049
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E756A/2020
 ATTAAAGGT1- C36T C241T C3037T C12915T C14408T A20268G G21255T A23403G

EPI_ISL_449051
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E75A6/2020
 AT1- C241T C3037T C6538T C14408T T21206G A23403G A24232G G25429T

EPI_ISL_449053
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E75C4/2020
 C241T C3037T C12915T C14408T A20268G A23403G

EPI_ISL_449054
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E75D3/2020
 ATTA1- C241T C3037T C12915T C14408T A20268G A23403G G24047A

EPI_ISL_449055
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E75E2/2020
 AT1- C241T C3037T C12915T C14408T A20268G A23403G

EPI_ISL_449056
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E762B/2020
 ATTAA1- C241T C3037T C14408T A23403G G26062T TTG27701- GGG28881AAC

EPI_ISL_449059
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7667/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G A24232G A24652T G25429T

EPI_ISL_449060
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7676/2020
 C241T C3037T T5344Y T7292C C14408T A23403G A24232G G25429T T27207C

EPI_ISL_449061
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7685/2020
 ATTA1- C241T C3037T C14408T A23403G A24232G G25429T

EPI_ISL_449062
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7694/2020
 ATTA1- C241T C2091T C3037T G3567A C14408T T23047C A23403G GGG28881AAC

EPI_ISL_449063
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E76B2/2020
 ATTA1- C241T C3037T T7292C C14408T G18105K A23403G A24232G G25429T T27207C

EPI_ISL_449065
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E76FE/2020
 ATTA1- C241T C335Y C3037T C14408T C15895Y A23403G A24232G A24652T G25429T

EPI_ISL_449066
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C14898T A23403G C28754T GGG28881AAC

EPI_ISL_449069
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7782/2020
 ATTA1- C241T C3037T C14408T A23403G A24232G G25429T AGTGTAC29756-

EPI_ISL_449070
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T7292C C14408T A23403G A24232G G25429T T27207C

EPI_ISL_449072
 2020-05-04 2020-05-19
 United Kingdom hCoV-19/England/NORW-E77EC/2020
 C241T C3037T C14408T T20376K T23395Y A23403G A24232G A24652T G25429T

EPI_ISL_450832
 2020-05-04 2020-05-22
 Sweden hCoV-19/Sweden/20-51167/2020
 C241T C1059T C3037T C14408T C16887T G20056A A23403G G24368T G25563T G26263A G29736A

EPI_ISL_451231
 2020-05-04 2020-05-24
 United States hCoV-19/USA/LA-EVTL070/2020
 C241T C1059T C1943T C3037T T6226C C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451232
 2020-05-04 2020-05-24
 United States hCoV-19/USA/LA-EVTL071/2020
 T10G T13A C241T C1059T C1943T C3037T T6226C C10537T C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451233
 2020-05-04 2020-05-24
 United States hCoV-19/USA/LA-EVTL072/2020
 C241T C1059T C1943T C3037T T6226C C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451234
 2020-05-04 2020-05-24
 United States hCoV-19/USA/LA-EVTL073/2020
 C241T C1059T C1943T C3037T T6226C C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451235
 2020-05-04 2020-05-24
 United States hCoV-19/USA/LA-EVTL074/2020
 C241T C1059T C3037T T11293C C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451236
 2020-05-04 2020-05-24
 United States hCoV-19/USA/LA-EVTL075/2020
 C241T C1059T C3037T G9526T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451239
 2020-05-04 2020-05-24
 United States hCoV-19/USA/LA-EVTL078/2020
 C241T C1059T C3037T T11293C C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451246
 2020-05-04 2020-05-24
 United States hCoV-19/USA/LA-EVTL085/2020
 C241T C1059T C3037T T11293C C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451247
 2020-05-04 2020-05-24
 United States hCoV-19/USA/LA-EVTL086/2020
 C241T C1059T C1101T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451653
 2020-05-04 2020-05-25
 Poland hCoV-19/Poland/Pom12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A20268G G22319T A23403G G29751T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_451654
 2020-05-04 2020-05-25
 Poland hCoV-19/Poland/Pom13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- CG241TT C3037T C4002T A6693G C8386T C8917T G10097A C13536T C14408T A23403G C23731T G26828T A26847G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_451666 MT509959
 2020-05-04 2020-05-25
 India SARS-CoV-2/human/IND/GBRC103/2020
 A1278G C1281T C6312A G11083T C13724T C13730T C23929T GTTA26158- C28289A C28311T

EPI_ISL_452242
 2020-05-04 2020-05-27
 Sweden hCoV-19/Sweden/20-51160/2020
 C241T AAGTCATTT686- C3037T C12439T C14195A C14408T A18432G A23403G

EPI_ISL_453615
 2020-05-04 2020-05-27
 United Kingdom hCoV-19/England/NOTT-11100B/2020
 C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789-

EPI_ISL_454585
 2020-05-04 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/33496/2020
 C241T C1059T C1190T C3037T A9848G C11916T C14408T C18885T C18998T A23403G G25563T G29540A

EPI_ISL_455786
 2020-05-04 2020-06-01
 India hCoV-19/India/RMRC90/2020
 C241T C3037T C14408T A19464G A23403G CAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29686-

EPI_ISL_455787
 2020-05-04 2020-06-01
 India hCoV-19/India/RMRC92/2020
 C241T C3037T C14408T A23403G TGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29691-

EPI_ISL_457246
 2020-05-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-136A99/2020
 C241T C3037T G4868A C5005T G5716A C10156T C14408T G22139T A23403G AG28877TC GGG28881AAC

EPI_ISL_457252
 2020-05-04 2020-06-02
 United Kingdom hCoV-19/England/EXET-136B87/2020
 C241T C1059T C1968T C3037T A13938G C14408T A23403G G25563T G29705T

EPI_ISL_457312
 2020-05-04 2020-06-02
 United Kingdom hCoV-19/England/NORT-28B38A/2020
 C241T C3037T A6133G C14408T A23403G G27014T A27024G GGG28881AAC

EPI_ISL_457326 LR821936
 2020-05-04 2020-06-02
 United Kingdom NORW-E752E
 C36Y C241T C3037T C12915T C14408T A20268G G21255T A23403G

EPI_ISL_457606
 2020-05-04 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C4F74/2020
 C241T C1469T C3037T A8374G C14408T C18501T A23403G GGG28881AAC

EPI_ISL_457631
 2020-05-04 2020-06-02
 United Kingdom hCoV-19/England/SHEF-C8857/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_457667
 2020-05-04 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CEE8C/2020
 C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T C26735T T28098C G29254T

EPI_ISL_457670
 2020-05-04 2020-06-02
 United Kingdom hCoV-19/England/SHEF-CFFF1/2020
 C241T C1190T C3037T C14408T C21364T A23403G GGG28881AAC

EPI_ISL_460859
 2020-05-04 2020-06-06
 Netherlands hCoV-19/Netherlands/Friesland_44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C21914T G22346T A23403G A28370G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460945
 2020-05-04 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C12403T C14408T A23403G G25563T G26109T G28314T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461310
 2020-05-04 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16047C C16308T T18417C C20148T A23403G C27213T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461315
 2020-05-04 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T1570C G7393T G11083T C14805T G15535T T17247C G26144T A28910T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461376
 2020-05-04 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461377
 2020-05-04 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461769
 2020-05-04 2020-06-06
 United Kingdom hCoV-19/England/LOND-D6ABA/2020
 C241T G376T C3037T C14408T A23403G A26530G T28098C

EPI_ISL_463590 MT642371
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1100/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463591 MT642377
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1101/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463592 MT642291
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1102/2020
 ATTAAAG1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_463594 MT642424
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1104/2020
 AT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463595 MT642328
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1105/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463596 MT642155
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1106/2020
 ATTAAAGGTTTA1- C241T C1059T G1584A C1878T C3037T G4285A C14408T C17977T A23403G C25096T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463597 MT642362
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1107/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463598 MT642281
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1108/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T C18788T C18828T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463599 MT642297
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1109/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T C18788T C18828T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463600 MT642250
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1110/2020
 AT1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_463601 MT642310
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1111/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463602 MT642406
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1112/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463603 MT642379
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1113/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463605 MT642156
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1115/2020
 AT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463607 MT642146
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1117/2020
 AT1- C241T A2161G C3037T C4993T C14408T A15593G C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463608 MT642363
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1118/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463609 MT642392
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1119/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463610 MT642304
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1120/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463611 MT642267
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1121/2020
 AT1- C241T C1059T C3037T C14408T C22000T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463612 MT642219
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1122/2020
 ATTAAAG1- C241T C1059T C3037T C12374T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_463613 MT642396
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1123/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463614 MT642141
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1124/2020
 ATTAAAG1- C241T A2161G C3037T C4993T C14408T A15593G C16376T C18877T A23403G G25563T T28861C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463615 MT642095
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1125/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_463616 MT642100
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1126/2020
 ATTAA1- C241T C3037T A5538T C14408T C14980T G16813A G17058T A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463617 MT642279
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1127/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A2161G C3037T C4993T C14408T A15593G C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463618 MT642324
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1128/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463619 MT642381
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1129/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463620 MT642393
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1130/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463621 MT642132
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1131/2020
 AT1- C241T C1059T C3037T C14408T C18788T C18828T A23403G C24106T G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_463622 MT642434
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1132/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463623 MT642296
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1133/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463624 MT642388
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1134/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463625 MT642292
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1135/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T G21468T A23403G G25563T G29553A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463626 MT642402
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1136/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_463627 MT642367
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1137/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C9281T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463628 MT642399
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1138/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463629 MT642404
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1139/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T C22506T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463630 MT642397
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1140/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463634 MT642153
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1144/2020
 AT1- C241T A2161G C3037T C4993T C14408T A15593G C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463635 MT642096
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1145/2020
 ATTAAA1- A122G C241T A2161G C3037T C4993T C10376T C14408T A15593G C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463641 MT642167
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1151/2020
 AT1- C241T C1059T C3037T C14408T G16912T A23403G C23481T G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_463642 MT642430
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1152/2020
 AT1- C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463644 MT642128
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1154/2020
 AT1- G1401A C5002T C8782T A10785G C17747T A17858G C18060T C26322T T28144C C29367T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_463645 MT642145
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1155/2020
 ATTAAAGGTTTATA1- C241T C3037T G4162T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463646 MT642106
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1156/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_463647 MT642170
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1157/2020
 ATT1- C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463648 MT642119
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1158/2020
 ATTAAAGG1- C241T C3037T A4197G C14408T G16813A A23403G T25783C C26366T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463649 MT642408
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1159/2020
 ATTAAAGGTTT1- C241T C3037T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463656 MT642373
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1166/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463660 MT642400
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1170/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463663 MT642205
 2020-05-04 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1173/2020
 AT1- C241T C1059T G1940A C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_465582
 2020-05-04 2020-06-11
 United Kingdom hCoV-19/England/20190007201/2020
 A187G C241T C3037T T12655C C14408T C19066A C21575T A23403G C25831Y C26447Y G29449K

EPI_ISL_465586
 2020-05-04 2020-06-11
 United Kingdom hCoV-19/England/20190056201/2020
 C241T C3037T C6681T C14408T G15438T A20268G A23403G G26217R

EPI_ISL_465592
 2020-05-04 2020-06-11
 United Kingdom hCoV-19/England/20190141101/2020
 C241T C3037T C14408T A23403G C25831T C26447T GGG28881AAC G29449T

EPI_ISL_465597
 2020-05-04 2020-06-11
 United Kingdom hCoV-19/England/20192018201/2020
 C241T T1592C C3037T C5886T C14408T T22261Y A23403G

EPI_ISL_465598
 2020-05-04 2020-06-11
 United Kingdom hCoV-19/England/20192020301/2020
 C241T C3037T C14408T A23403G C25831T C26447T GGG28881AAC G29449T

EPI_ISL_465605
 2020-05-04 2020-06-11
 United Kingdom hCoV-19/England/20192179501/2020
 C241T C3037T C14408T C16289T A22215G A23403G C23683T G25429T G28079T

EPI_ISL_465612
 2020-05-04 2020-06-11
 United Kingdom hCoV-19/England/20194102101/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29370Y C29614T

EPI_ISL_465620
 2020-05-04 2020-06-11
 United Kingdom hCoV-19/England/20194148101/2020
 C241T C593T C3037T C14408T C19488T A23403G GGG28881AAC

EPI_ISL_465626
 2020-05-04 2020-06-11
 United Kingdom hCoV-19/England/20196064904/2020
 C241T T1773C C3037T A4233G C14408T A23403G GGG28881AAC C29627T

EPI_ISL_466655
 2020-05-04 2020-06-11
 United States hCoV-19/USA/NE-10940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T T2815C C3037T A11348G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466661
 2020-05-04 2020-06-11
 United States hCoV-19/USA/NE-11323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T T2815C C3037T A11348G C14408T A23403G GGG28881AAC G29235A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466666
 2020-05-04 2020-06-11
 United States hCoV-19/USA/NE-10882/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G9500A C14408T A23403G G25563T C25603T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466667
 2020-05-04 2020-06-11
 United States hCoV-19/USA/NE-10900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C1059T C3037T G3259T T4546C C14408T C18647T A23403G A24129G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466668
 2020-05-04 2020-06-11
 United States hCoV-19/USA/NE-10928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466669
 2020-05-04 2020-06-11
 United States hCoV-19/USA/NE-10933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5578T C14408T A23403G A24129G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466670
 2020-05-04 2020-06-11
 United States hCoV-19/USA/NE-10939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1912T C3037T T13996G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466675
 2020-05-04 2020-06-11
 United States hCoV-19/USA/NE-11308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466907
 2020-05-04 2020-06-12
 Germany hCoV-19/Germany/BAV-MVP0254/2020
 G22661T A24531C G26144T

EPI_ISL_467928 MT635641
 2020-05-04 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C11916T C14408T C18998T C20823T A23403G G25563T G25947C G29540A

EPI_ISL_467932 MT635645
 2020-05-04 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0321/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C18998T C20823T A23403G G25563T G25947C G29540A C29870A

EPI_ISL_467934 MT635647
 2020-05-04 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0329/2020
 ATTAAAG1- G8C C241T C1059T C3037T C11916T C14408T C18998T C20823T A23403G G25563T G25947C G29540A C29870A

EPI_ISL_467941 MT635652
 2020-05-04 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0367/2020
 ATTAAAGGT1- C241T C1059T C3037T C11916T C14408T C18998T C20823T A23403G G25563T G25947C G29540A C29870A

EPI_ISL_468303 LR824221 LR860913
 2020-05-04 2020-06-16
 Switzerland 120244
 C241T C3037T C14408T G17388R C19170T C19324M G19509A A19953W C21998T G22403R A23403G GGG28881AAC

EPI_ISL_469277
 2020-05-04 2020-06-18
 United Arab Emirates hCoV-19/United Arab Emirates/L1189/2020
 C217T C884T G1397A G8653T G11083T A19073G C19374T G27915T T28688C C28868T C29077T G29742T

EPI_ISL_469383
 2020-05-04 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BF5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6308C C14408T T19839C A23403G C26681T GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469464
 2020-05-04 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625K C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469465
 2020-05-04 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C6CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469477
 2020-05-04 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T G21724T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469478
 2020-05-04 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C6B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469814
 2020-05-04 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C7843T C9438T C14408T T15254C A23403G G25563T G28180T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469819
 2020-05-04 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469820
 2020-05-04 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A8031G C14408T C20233T C22295T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469831
 2020-05-04 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B0FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_470794
 2020-05-04 2020-06-19
 United States hCoV-19/USA/MN-MDH-1114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_470795
 2020-05-04 2020-06-19
 United States hCoV-19/USA/MN-MDH-1115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_470796
 2020-05-04 2020-06-19
 United States hCoV-19/USA/MN-MDH-1116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_470797
 2020-05-04 2020-06-19
 United States hCoV-19/USA/MN-MDH-1117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_470798
 2020-05-04 2020-06-19
 United States hCoV-19/USA/MN-MDH-1118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_471167
 2020-05-04 2020-06-19
 Gambia hCoV-19/Gambia/1094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471176
 2020-05-04 2020-06-19
 Norway hCoV-19/Norway/2534/2020
 ATTAAA1- C241T C2416T C3037T G4207T G8371T C12815T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_471990
 2020-05-04 2020-06-23
 United Kingdom hCoV-19/England/EXET-13789E/2020
 C241T G816A C3037T C14408T A23403G G24577A GGG28881AAC

EPI_ISL_472296
 2020-05-04 2020-06-23
 United Kingdom hCoV-19/England/NORW-EB074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1150T C1713A C2940T C3037T C14408T A23403G

EPI_ISL_472305
 2020-05-04 2020-06-23
 United Kingdom hCoV-19/England/NORW-EB1CC/2020
 C241T C1684T C2940T C3037T T7228C C14408T A23403G

EPI_ISL_472306
 2020-05-04 2020-06-23
 United Kingdom hCoV-19/England/NORW-EB1EA/2020
 C241T C2940T C3037T C4543T C14408T C21648T A23403G TAC27682-

EPI_ISL_472310
 2020-05-04 2020-06-23
 United Kingdom hCoV-19/England/NORW-EB6CD/2020
 ATTAAAGG1- C241T C635Y G1069A C3037T G6368A C14408T C14790Y C17502Y A23403G G27478T GGG28881AAC

EPI_ISL_472420
 2020-05-04 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111EC5/2020
 C241T C3037T C14408T T15978C A23403G GGG28881AAC

EPI_ISL_472716
 2020-05-04 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15D416/2020
 C241T C3037T C14408T G21624T A23403G GGG28881AAC

EPI_ISL_473313
 2020-05-04 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F10F/2020
 C241T C1059T C3037T C14408T G20931T A23403G G25563T G26056T

EPI_ISL_473314
 2020-05-04 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F11E/2020
 C241T C3037T C14408T C15277T G16475A A23403G GGG28881AAC

EPI_ISL_475178
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-10760/2020
 C241T ATG518- C1059T C3037T T13996G C14408T A23403G G25563T G25775T C26461T

EPI_ISL_475180
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-10763/2020
 C241T C1059T C1912T C3037T G11083T T13996G C14408T A23403G G25563T

EPI_ISL_475185
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-10833/2020
 C241T C313T T2815C C3037T A11348G C14408T A23403G GGG28881AAC

EPI_ISL_475186
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-10834/2020
 C241T C313T T2815C C3037T A11348G C14408T A23403G GGG28881AAC

EPI_ISL_475187
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-10835/2020
 C241T C313T T2815C C3037T A11348G C14408T A23403G GGG28881AAC

EPI_ISL_475188
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-10837/2020
 C241T C1059T C3037T T3306C C12741T C12754T C14408T A23403G A24129G G25563T

EPI_ISL_475191
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-10862/2020
 C241T G2447A C3037T C7420T C14408T A20268G A23403G

EPI_ISL_475192
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-10866/2020
 C241T G2447A C3037T C7420T C14408T A20268G A23403G

EPI_ISL_475194
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-10889/2020
 C241T C832T C1059T C3037T G3259T T4546C C14408T C18647T A23403G A24129G G25563T

EPI_ISL_475195
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-10943/2020
 C241T C313T T2815C C3037T A11348G C14408T A23403G GGG28881AAC

EPI_ISL_475196
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-10964/2020
 C241T C313T T2815C C3037T A11348G C14408T A23403G GGG28881AAC

EPI_ISL_475197
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-10970/2020
 C241T C313T T2815C C3037T A11348G C14408T C14741T A23403G GGG28881AAC

EPI_ISL_475198
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-11111/2020
 C241T C1059T C3037T C6310T C14408T G15760A A23403G G25563T

EPI_ISL_475200
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-11124/2020
 C241T C1059T C3037T C6310T C14408T G15760A A23403G G25563T

EPI_ISL_475201
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-11163/2020
 T490A C3177T C3369T C3486T C6040T C8782T G11417T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_475204
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-11317/2020
 C241T C1059T C3037T C12741T C14408T A23403G A24129G G25563T T28952C

EPI_ISL_475205
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-11324/2020
 C241T C1059T C3037T C14408T C19488T TGG21294AAA A23403G T25036C G25563T

EPI_ISL_475208
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-11331/2020
 C241T C1059T C3037T C14408T C19488T TGG21294AAA C21622T A23403G T25036C G25563T

EPI_ISL_475211
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-11437/2020
 C241T C313T T2815C C3037T A11348G C14408T A23403G GGG28881AAC

EPI_ISL_475216
 2020-05-04 2020-06-23
 United States hCoV-19/USA/NE-11471/2020
 C241T C1059T C3037T T3306C C12741T C12754T C14408T A23403G A24129G G25563T

EPI_ISL_475514
 2020-05-04 2020-06-23
 Sweden hCoV-19/Sweden/20-14387/2020
 C241T C900T C1059T C3037T C11200T C14408T C19170T A23403G G24368T G25563T G27703T

EPI_ISL_475904
 2020-05-04 2020-06-25
 Austria hCoV-19/Austria/CeMM0553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G558K C3037T C3241Y T4120Y G8006K C10507Y C10619M C14408T C23034Y A23403G C23997Y T25807Y A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476101 LR824504 LR861052
 2020-05-04 2020-06-25
 Switzerland 140050
 C241T C313T C3037T G7838R C14408T A18861T C22347S G22403R T22516W A23403G GGG28881AAC C28928Y

EPI_ISL_476102 LR824503 LR861059
 2020-05-04 2020-06-25
 Switzerland 140051
 C241T C3037T C7195T C12357T C14408T A23403G A24862G C29750Y G29795R

EPI_ISL_476739
 2020-05-04 2020-06-25
 United States hCoV-19/USA/MN-MDH-1154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_476740
 2020-05-04 2020-06-25
 United States hCoV-19/USA/MN-MDH-1155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G C24023G G25563T C27964T C28531T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_476741
 2020-05-04 2020-06-25
 United States hCoV-19/USA/MN-MDH-1156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C539T C1059T C3037T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_476742
 2020-05-04 2020-06-25
 United States hCoV-19/USA/MN-MDH-1157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_476743
 2020-05-04 2020-06-25
 United States hCoV-19/USA/MN-MDH-1158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C539T C1059T C3037T C14408T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_476744
 2020-05-04 2020-06-25
 United States hCoV-19/USA/MN-MDH-1159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C539T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_476745
 2020-05-04 2020-06-25
 United States hCoV-19/USA/MN-MDH-1160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C539T C1059T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_476746
 2020-05-04 2020-06-25
 United States hCoV-19/USA/MN-MDH-1161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C539T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_476747
 2020-05-04 2020-06-25
 United States hCoV-19/USA/MN-MDH-1162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C539T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_476852
 2020-05-04 2020-06-26
 India hCoV-19/India/DRDE 2497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C344T C3037Y C6312A G11083T C13730T C18687T C23929T A25080R T25085K C28311T A29406T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476853
 2020-05-04 2020-06-26
 India hCoV-19/India/DRDE_2498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C3037Y C6312M G6359K C13730T C18486Y C23929T C28311Y G28325R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477000
 2020-05-04 2020-06-27
 Belgium hCoV-19/Belgium/rega-0504484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1729A C3037T C14408T T17442C G18105T T19839C A23403G T25727C G28178T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477658 MT679182
 2020-05-04 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_477660 MT679184
 2020-05-04 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T G29868A C29870A

EPI_ISL_477662 MT679186
 2020-05-04 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0449/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T A23403G C24034T G25563T A28108T

EPI_ISL_477663 MT679187
 2020-05-04 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38R C241T C1059T C3037T C14408T A23403G C24034T G25563T A28108T C29870A

EPI_ISL_479044
 2020-05-04 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1781/2020
 C241T C1714T C3037T C14408T A20268G A23403G C27213T C28854T AAAAAA29898-

EPI_ISL_479513
 2020-05-04 2020-06-30
 India hCoV-19/India/NIV-20134/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C9778T C14408T C16726T A23403G GGG28881AAC C29541T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479514
 2020-05-04 2020-06-30
 India hCoV-19/India/NIV-20608/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480260
 2020-05-04 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV167/2020
 C241T C3037T C7303T C14408T T19839C A23403G C25611A GGG28881AAC

EPI_ISL_480266
 2020-05-04 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV174/2020
 C241T C3037T C14408T T19839C A23403G C28292A GGG28881AAC

EPI_ISL_480268
 2020-05-04 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV178/2020
 C241T C3037T A8500G C14408T T19839C A23403G GGG28881AAC

EPI_ISL_480269
 2020-05-04 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV179/2020
 C241T C3037T G8017T C12809T C14408T G21624T A23403G GGG28881AAC

EPI_ISL_480277
 2020-05-04 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV190/2020
 C241T T606C C1059T C3037T A6646G A11815G C14408T C19524T A23403G G24368T G25563T

EPI_ISL_481105
 2020-05-04 2020-07-02
 Spain hCoV-19/Spain/Madrid_COV004963/2020
 C241T C3037T C14408T A20268G A23403G

EPI_ISL_481674
 2020-05-04 2020-07-03
 Finland hCoV-19/Finland/4May21S4/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481675
 2020-05-04 2020-07-03
 Finland hCoV-19/Finland/4May22S4/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T G29781T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481676
 2020-05-04 2020-07-03
 Finland hCoV-19/Finland/4May26S4/2020
 C241T C1059T C3037T C14408T G16827T G17418T G22225T A23403G G24368T G25563T C27688T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481677
 2020-05-04 2020-07-03
 Finland hCoV-19/Finland/4May27S4/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C29627T G29781T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481678
 2020-05-04 2020-07-03
 Finland hCoV-19/Finland/4May56S4/2020
 C241T C589T C1059T C3037T C6255T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481679
 2020-05-04 2020-07-03
 Finland hCoV-19/Finland/4May76S4/2020
 C241T C1059T C3037T C10078T C14408T A23403G G24368T G25563T GGCCACGCGGAGTACGATCGAGTG29736- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481680
 2020-05-04 2020-07-03
 Finland hCoV-19/Finland/4May78S4/2020
 C241T C1059T C3037T C10078T C12754T C14408T A23254G A23403G G24368T G25563T GGCCACGCGGAGTACGATCGAGTG29736- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481681
 2020-05-04 2020-07-03
 Finland hCoV-19/Finland/4May88S4/2020
 C241T C3037T C3987T C14408T A23403G G28395A GGG28881AAC A29342G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481786
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D52B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3267T A5366G C7423T A7479G G11083T C14805T T17247C C25572T G26144T C26370T C28887T A29552G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481788
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D3B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G A25545R G28077T G28221T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481789
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D1DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481806
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C14786T G20578T A23403G G25563T C25678T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481808
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7202Y T7207W C14408T A16929C A23403G A28778R GGG28881AAC G29032R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481811
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D2BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G5180A C7843T C9438T C14408T T15254C A23403G G25563T G29705T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481840
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D3A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1572T A2356C C3037T G10097A C10369T C14408T A23403G C23731T C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481855
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481861
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D2E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1572T A2356C C3037T G10097A C10369T C14408T A23403G C23731T C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481873
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D46A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C C20936T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481877
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8802T C14408T C20270T C21772T C22624Y A23014G A23403G GGG28881AAC C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481878
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D3F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2155T C3037T C14408T G14772T C18395T T19839C A23403G C26681T GGG28881AAC G29227T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481893
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C3037T G7798T C12786T C14408T A20268G A23403G C27577T C28854T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_481895
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G19549T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481915
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D1EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481926
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D51C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G4511A C7423T A7479G C9438T G11083T C14805T T17247C A17335M C25572T G26144T C28887T A29552G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481934
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G6421T C7423T A7479G -11075TTT G11083T C14805T T17247C C20233T G21974K C25572T G26144T C28887T A29552G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481941
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D3C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11221T C14408T C19170T G19509A A23403G T23659A G28077T G28221T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481950
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D39A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11521T C14408T G15016T T18411C A23403G GGG28881AAC C29284T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481952
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D45B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3743T C4683Y C7086T C14408T C18647T A23403G G27147T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482081
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599CEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T G11083T C14805T C16080T G26144T C27684T G28842T G29240A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482095
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599C67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1185T T1918C C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482117
 2020-05-04 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599D28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482407
 2020-05-04 2020-07-03
 United States hCoV-19/USA/OR-PROV-151/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T G28027T G29742T

EPI_ISL_482408
 2020-05-04 2020-07-03
 United States hCoV-19/USA/OR-PROV-153/2020
 C241T C1059T C3037T C14408T A15011T G15340T A23403G G25563T

EPI_ISL_482409
 2020-05-04 2020-07-03
 United States hCoV-19/USA/OR-PROV-154/2020
 C241T AAGTCATTT686- C3037T T4765C C6312T C11563T G14209T C14408T C17678T C18877T A23403G G24697T G25563T C29675T

EPI_ISL_483204
 2020-05-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0530-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T G17014T A23403G G25563T C29762T

EPI_ISL_483206
 2020-05-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0532-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1096G C3037T C14408T G14874T G15982T C18877T A22678G A23403G G24914T G25563T

EPI_ISL_483213
 2020-05-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0543-SAN/2020
 ATTA1- C241T C683T T1570C C3037T C9430T C14408T A20268G C21742T A23403G C28854T G29024T

EPI_ISL_483215
 2020-05-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0548-IPL/2020
 ATTAAAGG1- C241T C1288T C3037T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483219
 2020-05-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0553-IPL/2020
 ATTA1- C241T C1288T C3037T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483297
 2020-05-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0680-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1096G C3037T C14408T G14874T G15982T C18877T A22678G A23403G G24914T G25563T

EPI_ISL_483324
 2020-05-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0722-SAN/2020
 C241T C1288T C3037T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483325
 2020-05-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0724-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1288T C3037T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483326
 2020-05-04 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0725-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C92T C241T C1059T A2647G A2712G C3037T C14408T A23403G G25563T C26801T

EPI_ISL_484357
 2020-05-04 2020-07-08
 United Kingdom hCoV-19/England/NOTT-112231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9438T C14408T C16329T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484358
 2020-05-04 2020-07-08
 United Kingdom hCoV-19/England/NOTT-112240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486222 MT750413
 2020-05-04 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S AAGTCATTT686- C3037T G6532T C14408T C18395T G18898T C21772T A22904M A23122R A23403G T25902W T25908W G25913S G26730T G28739T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486313 MT750474
 2020-05-04 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2070/2020
 ATT1- C241T C3037T C8327T C14408T T16836C A23122R A23403G A24862G

EPI_ISL_486314 MT750475
 2020-05-04 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2071/2020
 ATTA1- C241T G2407T C3037T C8327T C14408T C18129Y A23403G A24862G T26102C C29545T

EPI_ISL_486315 MT750476
 2020-05-04 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2072/2020
 ATTAAAGGT1- C241T C3037T C8327T C14408T A23122R A23403G A24862G T25902W T29867H

EPI_ISL_486316
 2020-05-04 2020-07-10
 United States hCoV-19/USA/CA-CZB-2073/2020
 AT1- C241T C3037T C3653T C8327T C14408T C19269Y A23122R A23403G A24862G C25821Y

EPI_ISL_486317
 2020-05-04 2020-07-10
 United States hCoV-19/USA/CA-CZB-2074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A30R C241T C3037T C8327T C14408T A23122R A23403G A24862G T25902W T25908W G25913S C29835Y

EPI_ISL_486318 MT750477
 2020-05-04 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2075/2020
 A1- C241T C3037T C8327T C14408T A23122R A23403G A24862G T25902W T25908W G25913S T29867M

EPI_ISL_486319 MT750478
 2020-05-04 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2076/2020
 A1- C241T C3037T C8327T C14408T A23122R A23403G A24862G

EPI_ISL_486320 MT750479
 2020-05-04 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C3037T C8327T C14408T A23122V A23403G C24442T A24862G T25902W T25908W G25913S

EPI_ISL_486321
 2020-05-04 2020-07-10
 United States hCoV-19/USA/CA-CZB-2078/2020
 ATTA1- C241T C3037T C8327T C14408T C22326Y A23122R A23403G C24442T A24862G T25902W T25908W G25913S C27213Y C27549T

EPI_ISL_486322 MT750480
 2020-05-04 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2079/2020
 AT1- C241T C3037T C8327T C14408T A23122R A23403G A24862G

EPI_ISL_486323 MT750481
 2020-05-04 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8327T C14408T A22904M A23122R A23403G A24862G G24872T T25902W T25908W G25913S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486324
 2020-05-04 2020-07-10
 United States hCoV-19/USA/CA-CZB-2081/2020
 ATTA1- C241T C3037T C8327T C14408T A23122R A23403G C24442T A24862G C27549T

EPI_ISL_486325 MT750482
 2020-05-04 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2082/2020
 A1- C241T C3037T C8327T C14408T A23403G C24442T A24862G T29867H

EPI_ISL_486326 MT750483
 2020-05-04 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2083/2020
 ATTAA1- C241T C3037T C8327T C14408T T20256Y A23122R A23403G A24862G AAAAA29899-

EPI_ISL_486327 MT750484
 2020-05-04 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2084/2020
 ATTAAAGGTTTATACCTTCC1- C241T C344Y C657T C3037T C8327T C14408T T15920C G18651T A23122R A23403G C24442T A24862G G25429T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_486328 MT750485
 2020-05-04 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2085/2020
 ATTA1- C241T C3037T C8327T C10582Y C14408T A23122R A23403G C24442T A24862G C26110Y

EPI_ISL_486329 MT750486
 2020-05-04 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2086/2020
 AT1- C241T G2144A C3037T C8327T C14408T A23403G A24862G

EPI_ISL_486330
 2020-05-04 2020-07-10
 United States hCoV-19/USA/CA-CZB-2087/2020
 ATTA1- C66Y C241T C3037T C8327T C14408T A22904M A23122R A23403G A24862G C25669T T25902W T25908W G25913S

EPI_ISL_487664
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4756C C10029T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487665
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- C1059T C3037T T7814C C14408T G18213T A18818G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487734
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C12915T C14120T C14408T A20268G C22009T A23403G G27987T C28775T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487798
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487926
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487939
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C147T G219T C241T G923T C3037T A5280G C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487951
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T C21627T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488157
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-29D0BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3411Y C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488622
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-28406C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489070
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-29247E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15225C A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489143
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-292441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C2306T C3037T A14061G C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489144
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-292414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8042A G10097A C14408T C16616T A23403G C23731T C25714T G28580T GGG28881AAC G29179T C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489222
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-1001A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10376T C14408T A23403G C26208T C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489250
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FD455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9037C C11514T C14408T G22014T C23185T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489273
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FE621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5719C G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489284
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FEB40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C17004T G22592T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489305
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FE7F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17964A C18647T A23403G C23575T G24959T C25006T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489323
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-1003F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T G3304K G12988K C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489325
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FFFE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_489329
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-100324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10376T C11259T C14408T A23403G C26208T C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489338
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FD2E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10376T C11259T C14408T A23403G C26208T C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489353
 2020-05-04 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FD640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10376T C11259T C14408T A23403G C26208T C26681T C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490587
 2020-05-04 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C2107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18747T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490588
 2020-05-04 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C328B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C11750T C13381T C14408T A23403G C23731T A23992T C25350T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490589
 2020-05-04 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C36AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7736A C14408T C15324T A23403G C29721T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490595
 2020-05-04 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C5571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C11750T C13381T C14408T A23403G C23731T A23992T C25350T G27703T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492848
 2020-05-04 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C113A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G A3003T C3037T C5730T C7231T C14408T G19542T C22747T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492898
 2020-05-04 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C1194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T C14408T C21691T A23403G C25047T G28086T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493209 MT856682
 2020-05-04 2020-07-21
 United States SARS-CoV-2/human/USA/SC-USC-USC00173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8867A C14408T C16349T C17676T C18348T C21110T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493210 MT856683
 2020-05-04 2020-07-21
 United States SARS-CoV-2/human/USA/SC-USC-USC00437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A13401G C14408T C16349T C17676T C21110T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493211 MT856684
 2020-05-04 2020-07-21
 United States SARS-CoV-2/human/USA/SC-USC-USC00433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9763A C14408T A14736G A23403G G25563T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493509
 2020-05-04 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E20F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1559T C3037T C14408T A20268G C21707T A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493899
 2020-05-04 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2078A C3037T C14408T A20268G A23403G GG26466TC C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493900
 2020-05-04 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1377T C3037T C14408T C16289T A23403G G25429T G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493901
 2020-05-04 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493902
 2020-05-04 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1377T C3037T C14408T C16289T A19720G A23403G G25429T G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493903
 2020-05-04 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1377T C3037T C14408T C16289T A19720G A23403G G25429T G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493904
 2020-05-04 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A23403G A24862G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494454
 2020-05-04 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1240/2020
 AT1- C241T C1457T C3037T T11857C C14408T C15720T C19662T A20268G A23403G T24076C C28854T

EPI_ISL_494468
 2020-05-04 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1268/2020
 C241T C3037T C8326T C14408T G16843T A20268G A23403G A25253G C26735T C28498T C28854T

EPI_ISL_494500
 2020-05-04 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1337/2020
 ATTAAAGGTTTATACCT1- C241T C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T

EPI_ISL_494588
 2020-05-04 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1385T C3037T C11941T C14408T A20268G A23403G C28854T

EPI_ISL_494591
 2020-05-04 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494639
 2020-05-04 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494649
 2020-05-04 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C11620T C14408T A20268G A23403G G27358T C27903T C28854T

EPI_ISL_494654
 2020-05-04 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T G17014T A23403G G25563T G28881T

EPI_ISL_494656
 2020-05-04 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1549/2020
 ATTAAAGGTTTA1- C241T C3037T G9802T C14408T C17976T A20268G C22388T A23403G C28854T

EPI_ISL_495417
 2020-05-04 2020-07-22
 Turkey hCoV-19/Turkey/KU-007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C6317T C7765T C8326T C14408T C17690T C18877T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_495664 MT821773
 2020-05-04 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1489/2020
 ATTAAAGGTTTAT1- C913T C5784T C8782T C9836T C17747T A17858G C18060T G20390T C23114T T27220C T28144C G28221C C28344T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495665 MT821782
 2020-05-04 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C5974T C6040T C11036T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_499372
 2020-05-04 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168F62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T4186C G11801A T11836C C14408T T19839C A23403G G25552T C27641T GGG28881AAC A29526T

EPI_ISL_499797
 2020-05-04 2020-07-28
 United Kingdom hCoV-19/England/NORT-29D042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C18131T A23403G C23731T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499798
 2020-05-04 2020-07-28
 United Kingdom hCoV-19/England/NORT-29D17C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5142T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499799
 2020-05-04 2020-07-28
 United Kingdom hCoV-19/England/NORT-29D1B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C21342T A23403G G25563T T27324G G28812T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499800
 2020-05-04 2020-07-28
 United Kingdom hCoV-19/England/NORT-29D288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7764T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499802
 2020-05-04 2020-07-28
 United Kingdom hCoV-19/England/NORT-29D376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6196T C12073T C14408T A23403G G27626T G27750T C29762T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500962
 2020-05-04 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-10650A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5719C G11083T C14408T A23403G G25563T C26456T G29414T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500993
 2020-05-04 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1064FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5719C G11083T C14408T A23403G G25563T G28371T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501200
 2020-05-04 2020-07-31
 Malaysia hCoV-19/Malaysia/3097/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C6312A T7621C G11083T C13730T C23929T C26934A C28311T

EPI_ISL_507210
 2020-05-04 2020-08-03
 Russia hCoV-19/Russia/Novosibirsk-RII27316S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T C3037T C14408T T18231C A23403G G25563T C28651T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_508369
 2020-05-04 2020-08-04
 India hCoV-19/India/IK41/2020
 A4G C20T C241T C3037T C5175T C14408T C15720T A23403G T29680- G29868A

EPI_ISL_508370
 2020-05-04 2020-08-04
 India hCoV-19/India/IK42/2020
 C241T G599A C3037T C13730T G14209T C14408T A23403G A25985G C26313T G27628T G29868A

EPI_ISL_508371
 2020-05-04 2020-08-04
 India hCoV-19/India/IK44/2020
 A1- C241T C3037T C13730T C14408T A23403G C29409T G29868A

EPI_ISL_508372
 2020-05-04 2020-08-04
 India hCoV-19/India/IK45/2020
 ATTA1- C241T C3037T C14408T G18948A A23403G G29868A

EPI_ISL_508374
 2020-05-04 2020-08-04
 India hCoV-19/India/IK47/2020
 A1- C241T C900T C3037T A13498G C14408T A23403G G29868A

EPI_ISL_508375
 2020-05-04 2020-08-04
 India hCoV-19/India/IK48/2020
 ATTAAAGGTT1- C241T C3037T C8106T C14408T C21707T A23403G

EPI_ISL_509845 MT846529
 2020-05-04 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C5183T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509939 MT846626
 2020-05-04 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C19185T A23403G G25563T G28321A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510820
 2020-05-04 2020-08-07
 Sweden hCoV-19/Sweden/20-51272/2020
 C241T C753T C3037T C4582T C14195A C14408T A23403G T24063C G24977C C25710T G26828T

EPI_ISL_510821
 2020-05-04 2020-08-07
 Sweden hCoV-19/Sweden/20-51275/2020
 C241T C3037T C4582T C14195A C14408T A23403G T24063C G24977C C25710T G26828T

EPI_ISL_510822
 2020-05-04 2020-08-07
 Sweden hCoV-19/Sweden/20-51277/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_515414
 2020-05-04 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0149/2020
 ATTA1- C241T C1059T C3037T C6406T C9967T C14408T C14790T G15652T C17104T C22224T A23403G G25563T C27964T

EPI_ISL_515462
 2020-05-04 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C8802T C14408T C16650T A23403G G25563T A28900G C29769T

EPI_ISL_523180
 2020-05-04 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6500T C6539T A6876C C12400T T13006C C14408T G22028C A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523606
 2020-05-04 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523998
 2020-05-04 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-11036V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C14408T A23403G GGG28881AAC G29511T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_526480
 2020-05-04 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB4386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526481
 2020-05-04 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB4387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T G10300T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526482
 2020-05-04 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB4388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526483
 2020-05-04 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB4389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526487
 2020-05-04 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB5973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C6384T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526488
 2020-05-04 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB5985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526489
 2020-05-04 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB5987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527694
 2020-05-04 2020-09-04
 United States hCoV-19/USA/MN-CDC-6290/2020
 C241T C539T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527695
 2020-05-04 2020-09-04
 United States hCoV-19/USA/MN-CDC-6295/2020
 C241T C1059T C3037T A5309G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527714
 2020-05-04 2020-09-04
 United States hCoV-19/USA/MN-CDC-6508/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29449T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527717
 2020-05-04 2020-09-04
 United States hCoV-19/USA/MN-CDC-6514/2020
 C241T C1059T C3037T C9665S C10507T T11617Y C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527879
 2020-05-04 2020-09-05
 Nigeria hCoV-19/Nigeria/ED1010-CV215/2020
 ATTAAA1- C241T C3037T C3737T A3959G C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528415
 2020-05-04 2020-09-07
 United Kingdom hCoV-19/England/20192003304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T TTA516- C3037T C5183T C14408T C17999T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_528993
 2020-05-04 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE34742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1593T C3037T C3096T A6866W A6869T C14408T C17733T T22246C A23403G C24919T C28791T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_530086
 2020-05-04 2020-09-10
 Spain hCoV-19/Spain/MD-LP89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530199 MT997721
 2020-05-04 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C1314T C3037T C14408T A23403G G25563T A27821G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_534314
 2020-05-04 2020-09-13
 Brazil hCoV-19/Brazil/SP-317/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25C C241T C3037T C14408T A23403G G25088T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_534331
 2020-05-04 2020-09-13
 Spain hCoV-19/Spain/MD-HLP-105-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3045T C14408T C15141T C20259T A20268G A23403G T27205- C29686T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_536505
 2020-05-04 2020-09-16
 Peru hCoV-19/Peru/ICA-INS-107/2020
 ATTAAAG1- C241T C3037T C4002T G10097A C13536T C14408T C17676T A23403G C23731T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536506
 2020-05-04 2020-09-16
 Peru hCoV-19/Peru/ICA-INS-108/2020
 ATTAAAG1- C241T C3037T G4657T C5907T C14408T C15277T G19872T A21917G A23403G C25872T A26530G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536507
 2020-05-04 2020-09-16
 Peru hCoV-19/Peru/ICA-INS-109/2020
 TT2AA G7AAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNK C241T G2336T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536508
 2020-05-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-110/2020
 ATTAAAG1- C241T C3037T G10265A C14408T G17749T G22487C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_536509
 2020-05-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-111/2020
 A1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G27478T GGG28881AAC G29179T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536510
 2020-05-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-112/2020
 ATTA1- C241T C2388T C3037T C5907T C14408T C15277T A21917G A23403G C25872T C26456T A26530G ATT27759- TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536511
 2020-05-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-113/2020
 ATT1- C241T C3037T C13356T C14408T C18568T A23403G A26530G GAT27382CTC G29613T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536512
 2020-05-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-114/2020
 ATTAAAG1- C241T C3037T C5907T A6592G C14408T C15277T A21917G A23403G C25872T A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536513
 2020-05-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-115/2020
 ATTAAAG1- C241T C745T C3037T C4002T C6813T G10097A C13536T C14408T A23403G C23731T G23755T G27478T G28329T GGG28881AAC G29179T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536515
 2020-05-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-117/2020
 ATTAAAG1- C241T C3037T C6701T C11941T C14408T C18138T T19692C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536519
 2020-05-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-121/2020
 ATTAAAG1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28086T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_537256
 2020-05-04 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2B45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1103T C3037T C14408T A20268G A22069M C22482T A23403G A27156G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537274
 2020-05-04 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2B90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C7772T G10097A C13536T C14408T A23403G C23731T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542891
 2020-05-04 2020-09-23
 United States hCoV-19/USA/TX-HMH-1880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2937T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545080
 2020-05-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545081
 2020-05-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C344T C1601T C3037T C8499T C14408T C18060T T18231C A23403G GGG28881AAC G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545085
 2020-05-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2786G C3037T A7444G G8017T C12741T C13730T C14408T C16111T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545090
 2020-05-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28881A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545310
 2020-05-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2786G C3037T A7444G G8017T C12741T C14408T C16111T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560914
 2020-05-04 2020-09-29
 United States hCoV-19/USA/UT-UPHL-03076/2020
 ATTA1- C241T C3037T C14408T A23403G C26013T C26256T C29668T

EPI_ISL_568875
 2020-05-04 2020-10-02
 Malaysia hCoV-19/Malaysia/MGI-MAEPS126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C6312A T7621C G11083T C11208T C13730T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT598177
 2020-05-04 2020-06-11
 United States SARS-CoV-2/human/USA/SEARCH-0217-SAN/2020
 ATTAAAGGTT1- C241T C1457T C3037T C14408T A20268G C22713T A23403G T24076C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT778828
 2020-05-04 2020-07-20
 United States SARS-CoV-2/human/USA/COVID20-0144/2020
 C241T C1059T C3037T C9763A C14408T A14736G A23403G G25563T A28841G C29421T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

MT778829
 2020-05-04 2020-07-20
 United States SARS-CoV-2/human/USA/COVID20-0156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T9202C C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MT810496
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1413-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1385T C3037T C11941T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810499
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1418-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810681
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1240-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T T11857C C14408T C15720T C19662T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810695
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1268-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C8326T C14408T G16843T A20268G A23403G A25253G C26735T C28498T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810728
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1337-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C379A C1059T C3037T A4687T C14408T C15857T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810841
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1517-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810850
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1536-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C11620T C14408T A20268G A23403G G27358T C27903T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810855
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1545-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T G28881T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810857
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1549-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G9802T C14408T C17976T A20268G C22388T A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811220
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0530-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811222
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0532-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1096G C3037T C14408T G14874T G15982T C18877T A22678G A23403G G24914T G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811229
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0543-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C683T T1570C C3037T C9430T C14408T A20268G C21742T A23403G C28854T G29024T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811231
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0548-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811235
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0553-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811310
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0680-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1096G C3037T C14408T G14874T G15982T C18877T A22678G A23403G G24914T G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811337
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0722-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811338
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0724-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1288T C3037T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811339
 2020-05-04 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0725-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T A2647G A2712G C3037T C14408T A23403G G25563T C26801T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873059
 2020-05-04 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01194/2020
 ATTAAA1- C241T GTTATG515- C1059T C3037T C12459T C14408T A23403G G25563T C27920T

MT873078
 2020-05-04 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01260/2020
 ATTAAA1- C241T C2416T C3037T C14408T C18452T G23126T A23403G G25563T G25785T G26233T

MT873079
 2020-05-04 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01201/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T C14408T C16260T G21604T A23403G G25563T C27418T C28821A

MT873129
 2020-05-04 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01206/2020
 ATTAAA1- C241T C3037T C14408T C18807T A23403G T27645C C28603T G28899T

MT873250
 2020-05-04 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01257/2020
 ATTAAA1- G105T C241T C3037T C14408T C18877T G19962A A23403G G25563T C26801T

MT873270
 2020-05-04 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01256/2020
 ATTAAA1- C241T C823T C1348T C3037T C14408T C18877T G22918A A23403G G25563T G28371T

MT873307
 2020-05-04 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01195/2020
 ATTAA1- C241T A2104G C3037T C14408T T21656C A21993T A23403G G25244C C28603T G28899T

MT873408
 2020-05-04 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01207/2020
 ATTA1- C241T C2416T C3037T C13384T C14408T A23403G G25563T

MT967903
 2020-05-04 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6508/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29449T AAAAAAAAAAAAAAAAAAAAA29883-

MT967905
 2020-05-04 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6514/2020
 C241T C1059T C3037T C9665S C10507T T11617Y C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT967946
 2020-05-04 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6290/2020
 C241T C539T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT967947
 2020-05-04 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6295/2020
 C241T C1059T C3037T A5309G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW001258
 2020-05-04 2020-09-14
 United States SARS-CoV-2/human/USA/242-ETA/2020
 C241T C3037T C14408T A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MW001264
 2020-05-04 2020-09-14
 United States SARS-CoV-2/human/USA/251-NP-OP/2020/P1
 C241T T1918C C3037T C14408T C18877T C23230T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW030256
 2020-05-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C14408T A20268G A23403G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030262
 2020-05-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T G2336T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030263
 2020-05-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T G10265A C14408T G17749T G22487C A23403G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030264
 2020-05-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G27478T GGG28881AAC G29179T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030265
 2020-05-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C13356T C14408T C18568T A23403G A26530G GAT27382CTC G29613T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030266
 2020-05-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C5907T A6592G C14408T C15277T A21917G A23403G C25872T A26530G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030267
 2020-05-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C745T C3037T C4002T C6813T G10097A C13536T C14408T A23403G C23731T G23755T G27478T G28329T GGG28881AAC G29179T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030268
 2020-05-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C13536T C14408T A22330T A23403G C23731T G24269T G26918A GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030269
 2020-05-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C6701T C11941T C14408T C18138T T19692C A23403G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030272
 2020-05-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T A1682G C3037T C14408T G16968A T19839C C22458T A23403G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030273
 2020-05-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28086T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030276
 2020-05-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A G13213A C13536T C14408T C19164T A23403G C23731T C25460T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_447534 MT481897
 2020-05-05 2020-05-17
 India SARS-CoV-2/human/IND/GBRC76/2020
 C241T C3037T C12616T T13090C C14408T C18877T G21795T A23403G G25563T C26735T

EPI_ISL_447535 MT481899
 2020-05-05 2020-05-17
 India SARS-CoV-2/human/IND/GBRC77/2020
 C241T C3037T C12616T C14408T G16975T C18877T G21795T A23403G G25563T C26735T

EPI_ISL_447538 MT483555
 2020-05-05 2020-05-17
 India SARS-CoV-2/human/IND/GBRC79a/2020
 C241T C3037T AA10478CT C18877T A23403G G25563T C26735T

EPI_ISL_447539 MT483557
 2020-05-05 2020-05-17
 India SARS-CoV-2/human/IND/GBRC79b/2020
 C241T C3037T G4300T AA10478CT C14408T C18877T A23403G G25563T C26735T

EPI_ISL_447540 MT483554
 2020-05-05 2020-05-17
 India SARS-CoV-2/human/IND/GBRC81a/2020
 C241T C3037T C12616T C14408T C18877T G21795T A23403G G25563T C26735T

EPI_ISL_447541 MT483560
 2020-05-05 2020-05-17
 India SARS-CoV-2/human/IND/GBRC81b/2020
 C241T C3037T G11083T C12616T C14408T C18877T G21795T A23403G G25563T C26735T

EPI_ISL_447542 MT483556
 2020-05-05 2020-05-17
 India SARS-CoV-2/human/IND/GBRC82a/2020
 C241T C3037T G11083T C12616T C14408T C18877T G21795T A23403G G25563T C26735T

EPI_ISL_447543 MT483558
 2020-05-05 2020-05-17
 India SARS-CoV-2/human/IND/GBRC82b/2020
 C241T C3037T C12616T C14408T C18877T G21795T A23403G G25563T C26735T

EPI_ISL_447544 MT483553
 2020-05-05 2020-05-17
 India SARS-CoV-2/human/IND/GBRC83/2020
 C241T C3037T C9438T C14408T A23403G

EPI_ISL_447545 MT483559
 2020-05-05 2020-05-17
 India SARS-CoV-2/human/IND/GBRC84/2020
 C241T C3037T C9438T C14408T A23403G

EPI_ISL_447546 MT481898
 2020-05-05 2020-05-17
 India SARS-CoV-2/human/IND/GBRC85/2020
 C241T C3037T C14408T G16078A C18877T C22444T G23311T A23403G G25563T C26735T C28854T

EPI_ISL_448066
 2020-05-05 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AEC78/2020
 C241T C3037T G8612T C14408T G22203T G22436T A23403G GGG28881AAC G29705T

EPI_ISL_448068
 2020-05-05 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AEC96/2020
 C241T C3037T G8201A A11537G C14408T C14786T A23403G G25354A GGG28881AAC

EPI_ISL_449077
 2020-05-05 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7861/2020
 ATT1- C241T C3037T C14408T A23403G G26062T GGG28881AAC

EPI_ISL_449081
 2020-05-05 2020-05-19
 United Kingdom hCoV-19/England/NORW-E78BC/2020
 ATTAAAGGTTT1- C241T C3037T C6726Y C9977A C13694T C14408T G17443T G17608T A23403G G24197T G25429T

EPI_ISL_449082
 2020-05-05 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7922/2020
 ATTAAA1- C241T C1684T C2940T C3037T C14408T A23403G

EPI_ISL_449084
 2020-05-05 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7940/2020
 AT1- C241T C1684T C2940T C3037T C14408T A23403G

EPI_ISL_449085
 2020-05-05 2020-05-19
 United Kingdom hCoV-19/England/NORW-E797D/2020
 ATTAA1- C241T C3037T C13095Y C14408T A23403G C25728T GGG28881AAC

EPI_ISL_449087
 2020-05-05 2020-05-19
 United Kingdom hCoV-19/England/NORW-E79E6/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_449311
 2020-05-05 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4488/2020
 C241T C1059T C1076T C3037T C9598T C10582T C14408T G22309A A23403G G25563T C26461T

EPI_ISL_449312
 2020-05-05 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4492/2020
 C241T C3037T C14408T A20268G A23403G GG26466TC C28854T

EPI_ISL_451151 MT509508
 2020-05-05 2020-05-23
 India SARS-CoV-2/human/IND/GBRC106/2020
 C241T C2836T C3037T G5062A C14408T C18877T C22444T A23403G G25563T C26735T C28854T G29734T

EPI_ISL_452138 MT512645
 2020-05-05 2020-05-26
 United States SARS-CoV-2/human/USA/VI-CDC-4670/2020
 C241T C1059T C3037T C14408T A23403G T24979C G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_453616
 2020-05-05 2020-05-27
 United Kingdom hCoV-19/England/NOTT-11101A/2020
 C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789-

EPI_ISL_453618
 2020-05-05 2020-05-27
 United Kingdom hCoV-19/England/NOTT-111038/2020
 C241T C3037T G6123A G10562A C14408T C16289T A23403G G25429T T26870C C29802A

EPI_ISL_455668
 2020-05-05 2020-06-01
 India hCoV-19/India/S48/2020
 C241T C1419T C3037T C14408T C15738T C22530T A23403G C23635T G26730T

EPI_ISL_456668
 2020-05-05 2020-06-02
 United Kingdom hCoV-19/England/BIRM-5F20C/2020
 C241T C3037T C14408T A23403G GGG28881AAC TACGATCGAGTGTACAGTGAACAATGC29748-

EPI_ISL_456669
 2020-05-05 2020-06-02
 United Kingdom hCoV-19/England/BIRM-5F2EE/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_456675
 2020-05-05 2020-06-02
 United Kingdom hCoV-19/England/BIRM-5F3EB/2020
 C241T C3037T C13730T C14408T G23120T A23403G G25429T

EPI_ISL_456803
 2020-05-05 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10448T C10798A C13862T C14408T A23403G G23593T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456943
 2020-05-05 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4486/2020
 C241T C3037T C14408T C18788T T19839C A23403G A24862G GGG28881AAC

EPI_ISL_456944
 2020-05-05 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4494/2020
 C241T C3037T A8032G C9223T C11747T C14408T C18788T A19779G T19839C A23403G A24862G G28703T GGG28881AAC

EPI_ISL_456945
 2020-05-05 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4504/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_457241
 2020-05-05 2020-06-02
 United Kingdom hCoV-19/England/EXET-136914/2020
 C241T C3037T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_457468 LR814120
 2020-05-05 2020-06-02
 United Kingdom NORW-EBA49
 ATTA1- C241T C3037T G4962T C14408T C21736T A23403G C25728T GGG28881AAC

EPI_ISL_457469 LR814245
 2020-05-05 2020-06-02
 United Kingdom NORW-EBA67
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457476 LR821893
 2020-05-05 2020-06-02
 United Kingdom NORW-EBAEF
 C241T C3037T G4962T C14408T C21736T A23403G C25728T GGG28881AAC

EPI_ISL_457477 LR814183
 2020-05-05 2020-06-02
 United Kingdom NORW-EBAFE
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C12915T C14408T A20268G G21255T A23403G

EPI_ISL_457478 LR814174
 2020-05-05 2020-06-02
 United Kingdom NORW-EBB28
 A1- C241T C3037T C14408T C22987T A23403G C25728T G28044K GGG28881AAC

EPI_ISL_457480 LR821915
 2020-05-05 2020-06-02
 United Kingdom NORW-EBB46
 ATTAAAGGTTTA1- T1209C ATG1605- C8917T C10543T C16349T C17898T C27128T

EPI_ISL_457495 LR814161
 2020-05-05 2020-06-02
 United Kingdom NORW-EBC70
 ATTA1- C241T C3037T C14408T C22987T A23403G C25728T G28044T GGG28881AAC

EPI_ISL_457496 LR821946
 2020-05-05 2020-06-02
 United Kingdom NORW-EBC8F
 A1- T1209C ATG1605- C8917T C10543T C16349T C17898T C27128T C29025Y

EPI_ISL_457497 LR821925
 2020-05-05 2020-06-02
 United Kingdom NORW-EBC9E
 AT1- C241T C3037T C14408T G14989R A23403G C23604Y G26062T GGG28881AAC

EPI_ISL_457507 LR821927
 2020-05-05 2020-06-02
 United Kingdom NORW-EBD8C
 ATTAAAGGT1- C241T C3037T C12915T C14408T C14786T C17913Y A20268G A23403G

EPI_ISL_457515 LR821954
 2020-05-05 2020-06-02
 United Kingdom NORW-EBE2F
 ATTAAA1- C241T C3037T C14408T C22987T A23403G C25728T G28044K GGG28881AAC

EPI_ISL_457516 LR821904
 2020-05-05 2020-06-02
 United Kingdom NORW-EBE3E
 A1- C241T C3037T C12915T C14408T A20268G A23403G

EPI_ISL_458103 MT560689
 2020-05-05 2020-06-03
 India SARS-CoV-2/human/IND/GBRC143/2020
 G219T C241T C2836T C3037T C14408T C18877T C21575T C22444T C23277T A23403G G25563T C26735T C28854T

EPI_ISL_459933
 2020-05-05 2020-06-05
 India hCoV-19/India/MaxCov0031_CSIR-IGIB/2020
 C1707Y C6310M C6312A G11083T G12685K C13730T A15435R A20323W C20480M C21364M G21518K AA21550MW C21638Y C23929T T24622Y C28311T

EPI_ISL_459934
 2020-05-05 2020-06-05
 India hCoV-19/India/MaxCov0032_CSIR-IGIB/2020
 C1707Y C6310M C6312A G6960R G11083T G12685K C13730T A15435R A20345W C20429Y G21394K C21516M AA21550MW C23929T T24622Y C28311T

EPI_ISL_460031
 2020-05-05 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20493/2020
 C207T C241T C1059T C3037T C4582T A5011M C14408T A23403G G25563T T25580C C27673T C28893T

EPI_ISL_461212
 2020-05-05 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T TGA9850- T10561C C14408T C15324T C17339T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461712
 2020-05-05 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4455/2020
 C241T C3037T C14408T C16049T A20268G A23403G C26873T C28854T

EPI_ISL_461713
 2020-05-05 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4457/2020
 C241T A2215G C3037T A10874G C12823T C14408T A23403G G25429T G25440A T26677C

EPI_ISL_461720
 2020-05-05 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4546/2020
 C241T C3037T C3177T G10097A C14408T A23403G C23731T C25160T G28580T GGG28881AAC

EPI_ISL_461721
 2020-05-05 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4547/2020
 C241T C3037T C14408T C18788T T19839C A23403G A24862G GGG28881AAC

EPI_ISL_461983
 2020-05-05 2020-06-06
 United Kingdom hCoV-19/England/PORT-2CFC8F/2020
 C241T C3037T G14310T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_463073
 2020-05-05 2020-06-09
 India hCoV-19/India/ILSCV20165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G3729A C5869T C7321T C8782T G22468T A27691G T28144C G28878A TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_463074
 2020-05-05 2020-06-09
 India hCoV-19/India/ILSCV20166/2020
 ATTAAAGGTTTATACCT1- G3729A C7321T C8782T A13449G G22468T A27691G T28144C G28878A GTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29690-

EPI_ISL_463633 MT642166
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1143/2020
 ATTAAAG1- G354A C2070T C8782T T11104C C17747T A17858G C18060T C24969T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463636 MT642429
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1146/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463637 MT642358
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1147/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463638 MT642112
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1148/2020
 ATTAAAGGTTTAT1- A122G C241T A2161G C3037T C4993T C10376T C14408T A15593G C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_463640 MT642214
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1150/2020
 ATTAAAGGTTTA1- C241T C1059T G1584A C1878T C3037T C14408T C17977T A23403G C25096T G25563T T29820C AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_463643 MT642114
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1153/2020
 ATTAAAGGTT1- C241T A2161G C3037T C4993T C14408T A15593G C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463657 MT642131
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1167/2020
 AT1- A941G G1401A C1403T C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_463658 MT642333
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1168/2020
 ATTAAAGGTTTAT1- G1401A C1403T C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463659 MT642196
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1169/2020
 ATT1- G1401A C8782T C17747T A17858G C18060T A19308G C20404T T28144C T29760A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463661 MT642232
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1171/2020
 ATTAAAGGTTTAT1- C241T C3037T C6445T C14408T G16813A A23403G G25769T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463664 MT642225
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1174/2020
 ATTAAAGGTTTATACCTTCCCAG1- G354A C2070T C8782T C13356T C17747T A17858G C18060T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463665 MT642173
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1175/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A2161G C3037T A6588G C14408T C16376T C18877T A23403G G25563T A28458T C28854T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_463666 MT642211
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1176/2020
 ATTAAAGGTTTAT1- G354A C2070T C8782T T11104C C17747T A17858G C18060T C24969T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463667 MT642407
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1177/2020
 ATTAAAGGTTTAT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463673
 2020-05-05 2020-06-10
 United States hCoV-19/USA/WA-S1183/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C2701T C3037T C14408T A23403G G25563T G27376T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_463678 MT642101
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1188/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463679 MT642118
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1189/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_463680 MT642306
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1190/2020
 ATTAAAGGTTTATACCTT1- G354A C2070T C8782T C17747T A17858G C18060T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463681 MT642192
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1191/2020
 ATTAAAGGTTT1- G354A C2070T C8782T C14809T A16438G C17747T A17858G C18060T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463682 MT642099
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1192/2020
 ATTAAAGGTTTATACCTTCCC1- C241T A2161G C3037T C14408T G14857T C16376T C18877T A23403G G25563T C27493T A28458T C28854T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_463684 MT642289
 2020-05-05 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1194/2020
 ATTAAAGGTTTAT1- G354A C2070T C8782T C17747T A17858G C18060T C25207T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_465615
 2020-05-05 2020-06-11
 United Kingdom hCoV-19/England/20194106101/2020
 C241T C3037T C14408T G22899K A23403G G28346T GGG28881AAC C29614T

EPI_ISL_465616
 2020-05-05 2020-06-11
 United Kingdom hCoV-19/England/20194106301/2020
 C241T C3037T C14408T A23403G G28346T GGG28881AAC C29614T

EPI_ISL_465617
 2020-05-05 2020-06-11
 United Kingdom hCoV-19/England/20194106601/2020
 C241T C1342T C3037T C9803T C14408T A23403G GGG28881AAC C29614T

EPI_ISL_465621
 2020-05-05 2020-06-11
 United Kingdom hCoV-19/England/20194157001/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_465628
 2020-05-05 2020-06-11
 United Kingdom hCoV-19/England/20196112204/2020
 C241T C3037T A6308C G11071T C14408T T19839C A23403G C26078T C26681T GGG28881AAC

EPI_ISL_466652
 2020-05-05 2020-06-11
 United States hCoV-19/USA/NE-10744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2062T T2815C C3037T A11348G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466653
 2020-05-05 2020-06-11
 United States hCoV-19/USA/NE-10746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C19488T TGG21294AAA C21622T A23403G T25036C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466678
 2020-05-05 2020-06-11
 United States hCoV-19/USA/NE-11510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A7234G ACA12780- T13996G C14408T A23403G G25563T G28839A C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466680
 2020-05-05 2020-06-11
 United States hCoV-19/USA/NE-11647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T T2815C C3037T C4586T C4795T A11348G C14408T C20987T A23403G C28511T GGG28881AAC G29737A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467935 MT635648
 2020-05-05 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0331/2020
 ATTA1- C241T C1059T C3037T C4230A C14408T G15649T A23403G C25318T G25563T CCACGCGGAGTACGATCGAGTGTA29738- C29870A

EPI_ISL_467942 MT635653
 2020-05-05 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C11916T C14408T C18998T C20823T A23403G G25563T G25947C A26024G G29540A C29870A

EPI_ISL_468349 MT628087
 2020-05-05 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A708R C1347Y G12160R A12557G C17573Y C19524Y C23874M C24588Y C24904T C25916T A27359G C28706Y AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_468472 MT628200
 2020-05-05 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1526/2020
 T2Y C241T C466T C3037T C7119T C11575T C14408T C16394T C19029T A20268G A23403G C28854T C29095T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469056
 2020-05-05 2020-06-17
 Sweden hCoV-19/Sweden/20-14317/2020
 C241T G1421A C3037T G3259T C14408T A23403G C27981A GGG28881AAC

EPI_ISL_469057
 2020-05-05 2020-06-17
 Sweden hCoV-19/Sweden/20-14318/2020
 C241T C1251T C3037T C7765T C14408T A23403G GGG28881AAC

EPI_ISL_469096
 2020-05-05 2020-06-17
 Singapore hCoV-19/Singapore/342/2020
 C601T C1059T C6310A C6312A G11083T C13730T T14133C C17850T G19006A C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_470799
 2020-05-05 2020-06-19
 United States hCoV-19/USA/MN-MDH-1119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_470800
 2020-05-05 2020-06-19
 United States hCoV-19/USA/MN-MDH-1120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C3737T C14408T A23403G G25494T G25563T A26183G C28854T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_470897
 2020-05-05 2020-06-19
 Russia hCoV-19/Russia/Moscow_PMVL-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T T3499C A6403G C14408T T19839C A23403G C28498T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_470899
 2020-05-05 2020-06-19
 Russia hCoV-19/Russia/Moscow_PMVL-5/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T T3499C C14408T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_471887
 2020-05-05 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20866/2020
 C241T G1126T C3037T C14408T A23403G C25665Y G28325T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_471992
 2020-05-05 2020-06-23
 United Kingdom hCoV-19/England/EXET-1378DA/2020
 C241T T1490A C3037T C14408T G22335T A23403G C25613T GGG28881AAC

EPI_ISL_472311
 2020-05-05 2020-06-23
 United Kingdom hCoV-19/England/NORW-EB706/2020
 C241T C1684T T1745C C3037T C4002T C9438T G10097A C11572T C13536T C14184T C14408T A18650C C21058T A23403G C23731T GGG28881AAC

EPI_ISL_472317
 2020-05-05 2020-06-23
 United Kingdom hCoV-19/England/NORW-EB7BB/2020
 ATTA1- C241T C1457T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_472320
 2020-05-05 2020-06-23
 United Kingdom hCoV-19/England/NORW-EB812/2020
 ATTAAAGGTTT1- T1209C ATG1605- C8917T C16349T C17898T C27128T

EPI_ISL_472424
 2020-05-05 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111F1D/2020
 C241T C3037T C14408T T15978C A23403G GGG28881AAC

EPI_ISL_473308
 2020-05-05 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F0A8/2020
 C241T C3037T C14408T C19488T C22570T A23403G GGG28881AAC

EPI_ISL_473311
 2020-05-05 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F0E4/2020
 C241T C3037T T10012G C14408T A23403G GGG28881AAC C29451T

EPI_ISL_473312
 2020-05-05 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F0F3/2020
 C241T C3037T C14408T C15277T G16475A A23403G GGG28881AAC

EPI_ISL_473795
 2020-05-05 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4471/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G

EPI_ISL_474216
 2020-05-05 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1646CB/2020
 C241T C829T C1059T C3037T C14408T A23403G G25563T G27415A G28371T

EPI_ISL_474950
 2020-05-05 2020-06-23
 Spain hCoV-19/Spain/Velez_Malaga-COV003029/2020
 C241T G1439T C3037T T6673C C7086T C14408T T19467C A20268G A23403G C25546T

EPI_ISL_475210
 2020-05-05 2020-06-23
 United States hCoV-19/USA/NE-11435/2020
 C241T C1059T C3037T C14408T C19488T TGG21294AAA C21622T A23403G T25036C G25563T

EPI_ISL_475213
 2020-05-05 2020-06-23
 United States hCoV-19/USA/NE-11445/2020
 C241T C1059T C3037T T4651C C9430T T13996G C14408T C18261T A23403G G25563T

EPI_ISL_475214
 2020-05-05 2020-06-23
 United States hCoV-19/USA/NE-11460/2020
 C241T C1059T C3037T C14408T C19488T TGG21294AAA A23403G T25036C G25563T

EPI_ISL_475215
 2020-05-05 2020-06-23
 United States hCoV-19/USA/NE-11462/2020
 C241T C313T T2815C C3037T A11348G C14408T A23403G GGG28881AAC

EPI_ISL_475217
 2020-05-05 2020-06-23
 United States hCoV-19/USA/NE-11480/2020
 C241T C313T T2815C C3037T A11348G G13975T C14408T A23403G GGG28881AAC

EPI_ISL_475219
 2020-05-05 2020-06-23
 United States hCoV-19/USA/NE-11488/2020
 C241T C1059T C3037T C13458T C14408T C19718T A23403G A24129G G25563T

EPI_ISL_475220
 2020-05-05 2020-06-23
 United States hCoV-19/USA/NE-11503/2020
 C241T C1059T C3037T C14408T C19488T TGG21294AAA A23403G T25036C G25563T

EPI_ISL_475222
 2020-05-05 2020-06-23
 United States hCoV-19/USA/NE-11507/2020
 C241T G2447A C3037T C7420T C14408T A20268G A23403G

EPI_ISL_475225
 2020-05-05 2020-06-23
 United States hCoV-19/USA/NE-11518/2020
 C241T C313T T2815C C3037T A11348G A12075G C14408T G22205T A23403G GGG28881AAC

EPI_ISL_475227
 2020-05-05 2020-06-23
 United States hCoV-19/USA/NE-11527/2020
 C241T C313T T2815C C3037T A11348G C14408T A23403G GGG28881AAC

EPI_ISL_475228
 2020-05-05 2020-06-23
 United States hCoV-19/USA/NE-11549/2020
 C241T C1059T C1912T C3037T T13996G C14408T A23403G G25563T

EPI_ISL_475231
 2020-05-05 2020-06-23
 United States hCoV-19/USA/NE-11566/2020
 C241T C1059T C3037T C3393T C14408T C19488T TGG21294AAA A23403G T25036C G25563T

EPI_ISL_475232
 2020-05-05 2020-06-23
 United States hCoV-19/USA/CA-11567/2020
 C241T T1847C T3011C C3037T C14408T G22205T A23403G C26464T T27869C T28853G G29755T

EPI_ISL_475233
 2020-05-05 2020-06-23
 United States hCoV-19/USA/NE-11644/2020
 C241T C1059T C3037T C14408T C19488T TGG21294AAA C21622T A23403G T25036C G25563T

EPI_ISL_475236
 2020-05-05 2020-06-23
 United States hCoV-19/USA/NE-11837/2020
 C241T C1059T G2086T C3037T T4546C C14408T C14676T G20477T A23403G C23731T A24129G G25563T T28031C

EPI_ISL_475242
 2020-05-05 2020-06-23
 United Kingdom hCoV-19/England/PORT-2CFE7A/2020
 C241T C3037T C14408T A20268G A23403G C28697T

EPI_ISL_476024
 2020-05-05 2020-06-25
 Morocco hCoV-19/Morocco/moh100/2020
 ATTAAA1- C241T C3037T T6338C -11528T TGA11554CAGAG C14408T G15575T C15924T T22568C A23403G C23673A -23675TT -23681G A23712G C25665T GGG28881AAC A29903-

EPI_ISL_476749
 2020-05-05 2020-06-25
 United States hCoV-19/USA/MN-MDH-1164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C6026T C10319T G13564T C13665T C14408T A21222G A23403G G25563T C27964T C28531T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_476750
 2020-05-05 2020-06-25
 United States hCoV-19/USA/MN-MDH-1165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T C14802T A23403G C24023G G25563T C27964T C28531T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_476751
 2020-05-05 2020-06-25
 United States hCoV-19/USA/MN-MDH-1166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C3045T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_476752
 2020-05-05 2020-06-25
 United States hCoV-19/USA/MN-MDH-1167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_477001
 2020-05-05 2020-06-27
 Belgium hCoV-19/Belgium/rega-0505428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1902T C3037T C5907T A13947T C14408T A23403G G26211T C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477002
 2020-05-05 2020-06-27
 Belgium hCoV-19/Belgium/rega-0505485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11839G C12896T C14408T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477003
 2020-05-05 2020-06-27
 Belgium hCoV-19/Belgium/rega-0505486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1228A C1627T C3037T C14408T C14980T C15324T A23403G C27737T A28765G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477125
 2020-05-05 2020-06-28
 Bangladesh hCoV-19/Bangladesh/CHRF_0012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T G5063R C14408T A23403G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_477280
 2020-05-05 2020-06-29
 United States hCoV-19/USA/MN-MDH-1190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_477281
 2020-05-05 2020-06-29
 United States hCoV-19/USA/MN-MDH-1191/2020
 AT1- C241T C1059T C3037T C3737T C14408T A23403G C23802T G25494T G25563T A26183G C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_477282
 2020-05-05 2020-06-29
 United States hCoV-19/USA/MN-MDH-1192/2020
 ATTAAA1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_477283
 2020-05-05 2020-06-29
 United States hCoV-19/USA/MN-MDH-1193/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_477284
 2020-05-05 2020-06-29
 United States hCoV-19/USA/MN-MDH-1194/2020
 ATTAAAGGTTTATACC1- T17C C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_477664 MT679188
 2020-05-05 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0451/2020
 ATTAAAGGTTTATACCT1- C241T C3037T T4389G C14408T C18877T G22770A A23403G G25459T G25555T G25563T G28086T C29870A

EPI_ISL_477665 MT679189
 2020-05-05 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0452/2020
 ATTAAAGGTTTA1- C241T C3037T T4389G C14408T C18877T G22770A A23403G G25459T G25555T G25563T G28086T C29870A

EPI_ISL_477666 MT679190
 2020-05-05 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T T4389G C14408T C18877T G22770A A23403G G25459T G25555T G25563T G28086T C29870A

EPI_ISL_477667 MT679191
 2020-05-05 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A38R C241T G2635A C3037T T4389G C14408T C18877T G22770A A23403G G25459T G25555T G25563T G28086T C29870A

EPI_ISL_477668 MT679192
 2020-05-05 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0457/2020
 C241T C3037T T4389G C14408T C18877T G22770A A23403G G25459T G25555T G25563T G28086T C29870A

EPI_ISL_477669 MT679193
 2020-05-05 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0459/2020
 ATTAAA1- C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_477670 MT679194
 2020-05-05 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0460/2020
 ATTAAA1- C241T C1059T C3037T C14408T C19402T A23403G C24034T G25563T A28108T G29868A C29870A

EPI_ISL_477671 MT679195
 2020-05-05 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- A38R C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T C29870A

EPI_ISL_478251
 2020-05-05 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C13968T C14189T C14408T C17690T C18877T A23403G T24923C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479060
 2020-05-05 2020-06-30
 United Kingdom hCoV-19/England/OXON-B19C7/2020
 C241T C3037T G3259T C10450T C14408T A23403G GGG28881AAC AAA29901-

EPI_ISL_479517
 2020-05-05 2020-06-30
 India hCoV-19/India/NIV-21455/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C11651T C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480271
 2020-05-05 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV182/2020
 C241T A1830C C2113T C3037T C7765T C14408T C14588T G14772A C15952T C17104T C17690T C18877T C19170T A23403G G25563T C27945T

EPI_ISL_480276
 2020-05-05 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV189/2020
 C228T G1397A A2854G C8290T G9479T A9514G G11083T G26720C A26811G T28688C T28835C G29742T

EPI_ISL_480902 MT704069
 2020-05-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0251/2020
 ATTAAAGG1- C241T C1059T C3037T T4351C C10319T C14408T C16289T A23403G G25563T G26031T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480903 MT704070
 2020-05-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0252/2020
 ATT1- C241T C1059T C2536T C3037T C14408T G16852T T21111C A23403G G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480904 MT704071
 2020-05-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0253/2020
 A1- C241T C1059T C2536T C3037T C14408T G16852T T21111C A23403G T23959C G25563T C27964T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_480905 MT704072
 2020-05-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0254/2020
 ATTA1- C241T C1059T C2536T C3037T C14408T G16852T T21111C A23403G G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480906 MT704073
 2020-05-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0255/2020
 AT1- C241T C1059T C2536T C3037T C14408T G16852T T21111C A23403G G25563T C27964T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_480907 MT704074
 2020-05-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0256/2020
 A1- C241T C1059T C3037T C12400T C14408T G15260T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_480910 MT704077
 2020-05-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0259/2020
 ATTA1- C241T C541T C3037T C14408T C18877T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480913 MT704080
 2020-05-05 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0262/2020
 ATT1- C241T C1059T C3037T A8315G C10188T C12534T C14408T G22484T A23403G T24982C G25563T T26978A C27046T C27964T G28321T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_481694
 2020-05-05 2020-07-03
 Finland hCoV-19/Finland/5May13S12/2020
 C241T C1059T C3037T T12826C C14408T G16827T C17414T G17418T G22225T A23403G G24257T G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481695
 2020-05-05 2020-07-03
 Finland hCoV-19/Finland/5May16S2/2020
 C241T C1059T C3037T G4960T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481696
 2020-05-05 2020-07-03
 Finland hCoV-19/Finland/5May25S4/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481697
 2020-05-05 2020-07-03
 Finland hCoV-19/Finland/5May26S2/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481698
 2020-05-05 2020-07-03
 Finland hCoV-19/Finland/5May36S12/2020
 C241T C1059T C3037T G3871T C6525T A13722C C14408T A23403G G24368T G25563T C29466T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481699
 2020-05-05 2020-07-03
 Finland hCoV-19/Finland/5May44S12/2020
 C241T C1059T C3037T C14408T T16866C A23403G G24368T G25563T G29690T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481700
 2020-05-05 2020-07-03
 Finland hCoV-19/Finland/5May46S12/2020
 C241T C1059T C3037T C14408T T16866C A23403G G24368T G25563T G29690T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481701
 2020-05-05 2020-07-03
 Finland hCoV-19/Finland/5May47S12/2020
 C241T C1059T C3037T C14408T T16866C A23403G G24368T G25563T G29690T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481702
 2020-05-05 2020-07-03
 Finland hCoV-19/Finland/5May49S12/2020
 C241T C1059T C3037T C14408T C16946T G17418T A23403G G24368T G25563T G29134A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481703
 2020-05-05 2020-07-03
 Finland hCoV-19/Finland/5May49S6/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481704
 2020-05-05 2020-07-03
 Finland hCoV-19/Finland/5May56S6/2020
 C241T C3037T C6401T C14408T C16952T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481705
 2020-05-05 2020-07-03
 Finland hCoV-19/Finland/5May74S2/2020
 C241T C1059T C3037T C14408T G16827T G17418T G22225T A23403G G24368T G25563T G25690T G27758A TT27760AC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481706
 2020-05-05 2020-07-03
 Finland hCoV-19/Finland/5May84S2/2020
 C241T C1059T C3037T C9565T A11983G C14408T A19838C A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481785
 2020-05-05 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D43D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9430Y G10097A C10369T C14408T G21796A A23403G C23731T C28253Y GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481792
 2020-05-05 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481800
 2020-05-05 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D7E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782R C14408T A16929C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481826
 2020-05-05 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C4752T C8152T C11020T C14408T C22000T A23403G T26430C C27679T GGG28881AAC T29698G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481866
 2020-05-05 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D4E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1857T C3037T C6070T G7100A C14408T A22606T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481870
 2020-05-05 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D5A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A873G C3037T T3877A G7038A T11889C C14408T A23403G C27577T C27697G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481874
 2020-05-05 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D34F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1847C C3037T C14408T C19170T G19509A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481900
 2020-05-05 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481927
 2020-05-05 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12924Y C14408T A16929C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482079
 2020-05-05 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599C76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5425T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482088
 2020-05-05 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599CB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482092
 2020-05-05 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599C94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5425T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482094
 2020-05-05 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599C85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5425T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482109
 2020-05-05 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599C58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482410
 2020-05-05 2020-07-03
 United States hCoV-19/USA/OR-PROV-155/2020
 C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T G29648T

EPI_ISL_482411
 2020-05-05 2020-07-03
 United States hCoV-19/USA/OR-PROV-156/2020
 C241T C1059T C3037T C14408T C18086T A23403G G25563T A26528T A28492T

EPI_ISL_482412
 2020-05-05 2020-07-03
 United States hCoV-19/USA/OR-PROV-157/2020
 C241T C3037T C10116T C14408T C17639T A20268G A23403G G28077T

EPI_ISL_482762
 2020-05-05 2020-07-06
 Egypt hCoV-19/Egypt/MASRI-011/2020
 C241T C3037T A6466G C14408T G20578T G21974C A23403G C27739T

EPI_ISL_482763
 2020-05-05 2020-07-06
 Egypt hCoV-19/Egypt/MASRI-012/2020
 C241T C3037T A6466G C14408T A23403G

EPI_ISL_482764
 2020-05-05 2020-07-06
 Egypt hCoV-19/Egypt/MASRI-013/2020
 C241T C3037T A6466G C14408T A23403G

EPI_ISL_483208
 2020-05-05 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0535-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483211
 2020-05-05 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0539-IPL/2020
 A1- G208T C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_486224 MT750415
 2020-05-05 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C379A C1059T C1170T C3037T C14408T C22224T A23122R A23403G G25563T T25902W T25908W G25913S T27318A G28703T

EPI_ISL_486226 MT750416
 2020-05-05 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1949/2020
 A1- C241T C3037T T10366C C14408T T15669C A20268G A23122R A23403G G29734C

EPI_ISL_487731
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T A3881G C14408T G22073T A23403G C25350T G29140T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487732
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204A C241T C3037T G6461T C14408T C17733Y A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487787
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487872
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T433A C1059T C3037T T7814C C9561T C9891Y C14408T G18213T A18818G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487877
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T433A C1059T C3037T T7814C C9561T C9891T C12741T C14408T G18213T A18818G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487899
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C2773T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487913
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB5996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7814C C14408T G18213T A18818G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487977
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C25521T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488064
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-29E59D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C9474T G10097A C13536T C14408T C15720Y G23282T A23403G C23731T T28238C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488065
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-29E2D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C4158T C14408T C21575T A23403G C27813T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488071
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-29E15D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G23593T C27982T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488091
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-29E0E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488147
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-29E4FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C9474T G10097A C12786Y C13536T C14408T G23282T A23403G C23731T T28238C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488557
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-28408A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8293T C14408T A23403G T25202K G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489087
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-291E53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C4891Y G10097A C13536T C14408T C20629Y A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489107
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-291DFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G26188T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489109
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-291D56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8042A G10097A G10642T C14408T C16616T A23403G C23731T C25714T G28580T GGG28881AAC G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489114
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-291E17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489123
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-291DA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3950K T4693C G10097A C14408T A23403G C23731T C25714T G27087T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489131
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-291D92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C2306T C3037T A14061G C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489138
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-291D47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3483T G10097A C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489146
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-291D83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A27974G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489153
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/England/NORT-291D74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5107C G8042A G10097A C14408T C16616T A23403G C23731T C25714T G27217T G28580T GGG28881AAC G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489293
 2020-05-05 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FD710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9967T A10323G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490638
 2020-05-05 2020-07-15
 United Kingdom hCoV-19/England/SHEF-D0D11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7328T C14408T C16101T A18616G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492873
 2020-05-05 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C138F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7071S C7765T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493505
 2020-05-05 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2854G C3037T G5716T C8772T C14408T T19728C T20343A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493508
 2020-05-05 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E14E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T C10341T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493511
 2020-05-05 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E31B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4223T C8947T C14408T A23403G G27750T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493513
 2020-05-05 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E3A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493523
 2020-05-05 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3792T C14408T C17676T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493633
 2020-05-05 2020-07-21
 United Kingdom hCoV-19/England/PORT-2CFFB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11704T C14408T T19839C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493634
 2020-05-05 2020-07-21
 United Kingdom hCoV-19/England/PORT-2CFFE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493720
 2020-05-05 2020-07-21
 United Kingdom hCoV-19/England/SHEF-CE147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T141C C3037T C7029T C8752T A8968G C14408T C15752T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494450
 2020-05-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1228/2020
 ATTAAAGGTTTA1- C241T C3037T T5290C C14408T A20268G A23403G C28292A C28854T

EPI_ISL_494451
 2020-05-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1229/2020
 ATTAAAGGTT1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494453
 2020-05-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G17302T C18559T A20268G A23403G C26681T C28854T

EPI_ISL_494455
 2020-05-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1242/2020
 ATTAA1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494458
 2020-05-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1254/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T

EPI_ISL_494461
 2020-05-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1260/2020
 ATTAAAGGTT1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_494472
 2020-05-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T T19839C A23403G A23756G GGG28881AAC

EPI_ISL_494474
 2020-05-05 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1457T C3037T -3074GAA T11857C C14408T C19662T A20268G A23403G T24076C C28854T

EPI_ISL_494583
 2020-05-05 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1397/2020
 ATTAAAGGTTTA1- C241T C3037T T5290C C11074T C14408T A20268G A23403G C28854T

EPI_ISL_494584
 2020-05-05 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12440C C14408T A20268G A23403G C24771T C26456T C28854T G29254A

EPI_ISL_494586
 2020-05-05 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C9096T C14408T G19969A A20268G A23403G C28854T

EPI_ISL_494658
 2020-05-05 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1551/2020
 ATTAAAGGTTTA1- C241T C3037T G9802T C14408T C17976T A20268G C22388T A23403G C25614T C28854T

EPI_ISL_495566
 2020-05-05 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S001042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G12514T G14250T C14408T C18698T A23403G G25563T A26927G A27533G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495592
 2020-05-05 2020-07-23
 United States hCoV-19/USA/MI-UM-2006S001135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495787 MT821674
 2020-05-05 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1337/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C5907T A9749G C11094T C14408T C20483T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_499452
 2020-05-05 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10376T C14408T G18583T A23403G G23868T G24368T G25563T G27390C G29773T

EPI_ISL_499796
 2020-05-05 2020-07-28
 United Kingdom hCoV-19/England/NORT-29CEB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C3037T C8334T A10194C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500971
 2020-05-05 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1064D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9063K C14408T A23403G A23902T T24565A G25437T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500990
 2020-05-05 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1064B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C17004T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501002
 2020-05-05 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1064EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A23902T T24565A G25437T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501014
 2020-05-05 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2716T C3037T G5180A C14408T T19839C A22101G A23013C A23403G A24205T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501016
 2020-05-05 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1064A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9967T A10323G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501627
 2020-05-05 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260F06F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5575T G6632S C14408T A23403G G25112A GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507194
 2020-05-05 2020-08-03
 United Kingdom hCoV-19/Scotland/EDB6708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2306T C3037T C10798A C13862T C14408T A23403G C28836T CCACGCGGAGTACGATCGAGTGT29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507195
 2020-05-05 2020-08-03
 United Kingdom hCoV-19/Scotland/EDB6709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2306T C3037T C10798A C13862T C14408T A23403G C28836T CCACGCGGAGTACGATCGAGTGT29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507196
 2020-05-05 2020-08-03
 United Kingdom hCoV-19/Scotland/EDB6710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A7088T G7091T C12710T G25647T A28492G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508377
 2020-05-05 2020-08-04
 India hCoV-19/India/IK50/2020
 C241T C3037T C8655T C14408T G14428T A23403G T27206C G29868A

EPI_ISL_508378
 2020-05-05 2020-08-04
 India hCoV-19/India/IK51/2020
 C241T C3037T C14408T G16365T C21707T A23403G G29543T G29868A

EPI_ISL_509427
 2020-05-05 2020-08-05
 United States hCoV-19/USA/AL-SV106V1/2020
 C241T C1059T C3037T A9562G C14408T G16710A G17893T C21575T A23403G G25563T C27964T

EPI_ISL_509936 MT846623
 2020-05-05 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T T6292C C6720T C8782T G9753A T18736C C22088T C24034T T26729C G28077C T28144C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510550
 2020-05-05 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2212/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510562
 2020-05-05 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2224/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_510823
 2020-05-05 2020-08-07
 Sweden hCoV-19/Sweden/20-51278/2020
 C241T C3037T G11083T C14408T A23403G C25469T C26447T GGG28881AAC C28887T

EPI_ISL_511030
 2020-05-05 2020-08-07
 Portugal hCoV-19/Portugal/PT0771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T A20742C A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512180
 2020-05-05 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C2156T C3037T C14408T A20268G A23403G C28854T A29556T

EPI_ISL_512184
 2020-05-05 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2156T C3037T C10623T C14408T A20268G A23403G C28854T A29556T

EPI_ISL_514136
 2020-05-05 2020-08-14
 Brazil hCoV-19/Brazil/RO-06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C364A C3037T C14408T C15324T C16428T A23403G T25036C CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_514137
 2020-05-05 2020-08-14
 Brazil hCoV-19/Brazil/RO-07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C14408T C23244A A23403G T27299C GGG28881AAC T29148C CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_516698
 2020-05-05 2020-08-21
 United States hCoV-19/USA/VA-DCLS-0824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T A23403G G28068T GGG28881AAC G29395A C29857Y C29870A

EPI_ISL_516707 MT913141
 2020-05-05 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C8664A G8851A C14408T A23403G A25505C GGG28881AAC

EPI_ISL_516709 MT913143
 2020-05-05 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C22376T A23403G G24193A G25563T T27447C C29870A

EPI_ISL_518900 MT920040
 2020-05-05 2020-08-25
 United States SARS-CoV-2/human/USA/MN-MDH-1507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2143T C3037T C14408T G17197T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_522441
 2020-05-05 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2658/2020
 ATTAAAGGTTTATACCT1- C228T G1397A T7771C G9479T A9514G G11083T C19961T G26720C C27532T T28688C T28835C G29742T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_524469
 2020-05-05 2020-08-28
 Brazil hCoV-19/Brazil/SP-254/2020
 ATTAAAGGTTTATACCTTCCCAG1- T25G C241T C3037T C4890T C12053T C14408T C16323T G17749T C20132T A23403G G25088T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_524785
 2020-05-05 2020-08-28
 Brazil hCoV-19/Brazil/PA-IEC-165313/2020
 C241T C3037T G3167A A6295G A6319G C14408T C16092T A23403G G25088T T26149C GGG28881AAC

EPI_ISL_524789
 2020-05-05 2020-08-28
 Brazil hCoV-19/Brazil/MA-IEC-166716/2020
 C241T C1912T C3037T C14408T C22224T A23403G C27297A T27299C GGG28881AAC T29148C

EPI_ISL_528687
 2020-05-05 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/13/2020
 C241T C3037T C14408T G23311T A23403G C24370T GGG28881AAC

EPI_ISL_528689
 2020-05-05 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/16/2020
 C241T C3037T C5512T G5924A C14408T T21775G A23403G GGG28881AAC

EPI_ISL_528693
 2020-05-05 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/21R/2020
 C241T C3037T A6466G C14408T A15596G TTA21991- A23403G C27911T G28396A

EPI_ISL_529966
 2020-05-05 2020-09-10
 Indonesia hCoV-19/Indonesia/JI-ITD-7061V/2020
 ATT1- C241T C3037T C9985T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_530087
 2020-05-05 2020-09-10
 Spain hCoV-19/Spain/MD-LP90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8602T C14408T A18735G A20130T A20268G A23403G T27656C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530196 MT997718
 2020-05-05 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1600/2020
 ATTA1- C241T C1059T C3037T C4897T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530197 MT997719
 2020-05-05 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1601/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C4897T G11528A C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_530198 MT997720
 2020-05-05 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T9070C A11917G C14408T C18247T A23403G G25287T G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_534317
 2020-05-05 2020-09-13
 Brazil hCoV-19/Brazil/SP-324/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G598T C3037T C12053T C14408T G14500T A23403G G25088T G25660C GGG28881AAC C29857T T29859G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_534320
 2020-05-05 2020-09-13
 Brazil hCoV-19/Brazil/SP-256/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T A6319G C6336T C14408T A23403G G25088T T26149C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536514
 2020-05-05 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-116/2020
 ATTAAAG1- C241T C3037T C4002T G10097A C13536T C14408T A22330T A23403G C23731T G24269T G26918A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536517
 2020-05-05 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-119/2020
 ATTAA1- C241T C3037T C4002T G10097A C12854T C13536T C14408T G20752T A21131G A23403G C23731T GGG28881AAC T29851C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536518
 2020-05-05 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-120/2020
 AT1- C241T A1682G C3037T C14408T G16968A T19839C C22458T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_536520
 2020-05-05 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-122/2020
 ATTAAAG1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G24751T GTT26155- GGG28881AAC G29179T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_537224
 2020-05-05 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2AC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3552T C4002T G6865T C7772T G10097A C13536T C14408T A23403G C23731T C27513T G28321T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537246
 2020-05-05 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2BBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T A23403G C23613T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539829 MW020066
 2020-05-05 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1635/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_541398
 2020-05-05 2020-09-22
 Brazil hCoV-19/env/Brazil/RJ-4736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C3037T G11242K C11361Y C14408T A23403G T27299C GGG28881AAC T29148C C29304M CATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29696-

EPI_ISL_541781
 2020-05-05 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286E9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542886
 2020-05-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T G27952T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542887
 2020-05-05 2020-09-23
 United States hCoV-19/USA/TX-HMH-1873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3481T C14408T C18463T A21137G A23403G G25563T C27964T T28238C G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545134
 2020-05-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C23191T A23403G G25563T A29396C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559732
 2020-05-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-45DD72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2618R C8782T T18488C C21846Y T23605G C26261Y T26354W T28144C C29366Y A29596G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568971
 2020-05-05 2020-10-02
 France hCoV-19/France/IHU-0803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T G9479T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568977
 2020-05-05 2020-10-02
 France hCoV-19/France/IHU-0817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G G25563T G25767T C29541T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT797760
 2020-05-05 2020-07-24
 United States SARS-CoV-2/human/USA/COVID20-0180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C16349T C17676T C21110T A23403G C25528T G25563T C27964T C28846T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT810491
 2020-05-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1397-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T T5290C C11074T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810492
 2020-05-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1398-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T T12440C C14408T A20268G A23403G C24771T C26456T C28854T G29254A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810494
 2020-05-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1410-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C9096T C14408T G19969A A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810677
 2020-05-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1228-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T T5290C C14408T A20268G A23403G C28292A C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810678
 2020-05-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1229-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810680
 2020-05-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1239-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T G17302T C18559T A20268G A23403G C26681T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810682
 2020-05-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1242-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810685
 2020-05-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1254-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810688
 2020-05-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1260-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810699
 2020-05-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1274-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T T19839C A23403G A23756G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810701
 2020-05-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1276-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T -3074GAA T11857C C14408T C19662T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810859
 2020-05-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1551-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G9802T C14408T C17976T A20268G C22388T A23403G C25614T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811224
 2020-05-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0535-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811227
 2020-05-05 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0539-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT820130
 2020-05-05 2020-07-30
 United States SARS-CoV-2/human/USA/SV106V1/2020
 C241T C1059T C3037T A9562G C14408T G16710A G17893T C21575T A23403G G25563T C27964T

MT873099
 2020-05-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00896/2020
 AT1- C241T C1059T C3037T G11083T C14408T A23403G G24697A G25563T

MT873120
 2020-05-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01325/2020
 C241T A2104G C3037T C14408T T21656C A21993T A23403G G25244C C28603T G28899T

MT873167
 2020-05-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01331/2020
 A1- C241T C1059T C3037T C11455T T14307C C14408T C16260T C16985T G21569T A23403G G25563T C28821A

MT873191
 2020-05-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01333/2020
 ATTAA1- C241T C2106T C3037T C8318A C14408T C16260T T18278C A23403G C28603T G28899T A29806T

MT873199
 2020-05-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00893/2020
 ATTAAA1- G105T C241T C643T C3037T C5144T C11758T C14408T C18877T A23403G G25563T

MT873216
 2020-05-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01343/2020
 ATTAAA1- C241T C1059T T2950C C3037T C11916T C14408T A23403G G25563T

MT873224
 2020-05-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01284/2020
 ATTAAA1- C241T A2104G C3037T C14408T T21656C A21993T A23403G G25244C C28603T G28899T

MT873293
 2020-05-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-00900/2020
 ATTAA1- C241T C2106T C3037T C8318A C14408T C16260T T18278C A23403G G24434T C28603T G28899T A29806T

MT873301
 2020-05-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01297/2020
 ATTAA1- C241T C2416T C3037T A10821G C14408T A17207G A23403G G25563T G26233T

MT873336
 2020-05-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01328/2020
 A1- C241T C2106T C3037T C8318A C14408T C16260T T18278C A23403G C28603T G28899T A29806T

MT873361
 2020-05-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01338/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T A23403G G25563T

MT873370
 2020-05-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01304/2020
 ATT1- C241T C337T T833C C1059T C3037T C14408T C20099T A23403G G25563T C26208T G26428T C27964T

MT873407
 2020-05-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01344/2020
 ATT1- C241T AAGTCATTT686- C1059T C3037T C11916T C14408T A23403G G25563T

MT873479
 2020-05-05 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01290/2020
 ATTAAA1- C241T A2104G C3037T C14408T T21656C A21993T A23403G G25244C C28603T G28899T

MW030271
 2020-05-05 2020-09-22
 Peru SARS-CoV-2/human/PER/covper040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C12854T C13536T C14408T G20752T A21131G A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030274
 2020-05-05 2020-09-22
 Peru SARS-CoV-2/human/PER/covper043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G24751T GTT26155- GGG28881AAC G29179T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030275
 2020-05-05 2020-09-22
 Peru SARS-CoV-2/human/PER/covper044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTC1- C241T C3037T C14408T C18568T C21622A A23403G A26530G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030277
 2020-05-05 2020-09-22
 Peru SARS-CoV-2/human/PER/covper046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C601T C3037T C4002T C5700T G10097A C13536T C14408T C14676T G14829T G19735T CA22329TT A23403G C23731T GGG28881AAC ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_436504
 2020-05-06 2020-05-06
 United States hCoV-19/USA/PA-MGSC58-05/2020
 C241T C1059T A1269G C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_448049
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1ADC79/2020
 C241T C2459T C3037T C9778T C14408T C14805T C19572T A23403G A28008G GGG28881AAC

EPI_ISL_448086
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AF600/2020
 C241T C3037T C6606T C14408T A20268G TTA21991- A23403G C28854T

EPI_ISL_448087
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AF62E/2020
 C241T C3037T C14408T C16289T A23403G G25429T

EPI_ISL_448097
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1B000E/2020
 C241T G271T C3037T C14408T G22346T A23403G C26622T GGG28881AAC

EPI_ISL_448098
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1B001D/2020
 C241T C3037T C14408T A23403G C26447T G27281T GGG28881AAC

EPI_ISL_448111
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1B011A/2020
 C241T C3037T C14408T A15657G A23403G

EPI_ISL_448113
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1B01CF/2020
 C241T T2812C C3037T C14408T C20611T A23403G GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29730-

EPI_ISL_448114
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1B05D2/2020
 C241T C3037T C14408T C19140T A23403G GGG28881AAC

EPI_ISL_449071
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/NORW-E77CE/2020
 ATTA1- C241T C3037T A9749G C14408T A23403G A24232G G25429T G27788T

EPI_ISL_449073
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7816/2020
 ATTAAAGG1- C241T C3037T C12915T C14408T A20268G G21255T A23403G

EPI_ISL_449074
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7825/2020
 ATTAAAGGTTTATACC1- C241T C3037T C12915T C14408T T16050Y A20268G G21255T A23403G

EPI_ISL_449075
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7834/2020
 ATTAAAGGTTT1- C241T C3037T C12915T C14408T A20268G G21255T A23403G

EPI_ISL_449079
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/NORW-E788F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C12915T C14408T A20268G G21255T A23403G

EPI_ISL_449090
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7DEA/2020
 ATTAAA1- C241T C2940T C3037T C12672T C14408T C21648T A23403G

EPI_ISL_449091
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7DF9/2020
 ATTAAAGGTTT1- C241T C3037T C10030T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_449092
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7E05/2020
 ATT1- C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_449093
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7E9C/2020
 ATT1- C241T C3037T C10030T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_449094
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7EAB/2020
 ATTA1- C36T C241T C3037T C12915T C14408T A20268G G21255T A23403G

EPI_ISL_449095
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7EBA/2020
 C241T A476G C3037T C10507T C14408T A16638G G17893T C18877T A23403G G25563T

EPI_ISL_449096
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/England/NORW-E7F4E/2020
 AT1- C241T C3037T C10030T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_449313
 2020-05-06 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4621/2020
 C241T C3037T C9474T G10097A C14408T A23403G C23731T C25160T G28580T GGG28881AAC

EPI_ISL_450788 MT509504
 2020-05-06 2020-05-22
 India SARS-CoV-2/human/IND/GBRC99/2020
 C241T C3037T G4866T C14408T C14425A A21511G A23403G

EPI_ISL_450839
 2020-05-06 2020-05-22
 Bangladesh hCoV-19/Bangladesh/DU_50740/2020
 ATTAAAGGTTTATACCT1- T18C C241T A1163T C3037T C3961T C14408T C15089T A23403G GGG28881AAC T29848A ATAGCTT29850- C29857T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_450840
 2020-05-06 2020-05-22
 Bangladesh hCoV-19/Bangladesh/DU_50758/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A1163T T2041C C3037T G4444T G8371T C14408T C21846T A23403G GGG28881AAC C28961T A29403G T29848A A29850T AG29852TA AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_450842
 2020-05-06 2020-05-22
 Bangladesh hCoV-19/Bangladesh/DU_50761/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A1163T C3037T G4444T G8371T G10979A C14408T A23403G G25906T TACAACAGTACTTTTAAAAGAACCTTGCTCTTCTGGAACATACGAGGGCAATTCACCATTTCATCCTCTAGCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGT27471- GGG28881AAC A29403G T29848A A29850T AG29852TA AA29875GC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_450843
 2020-05-06 2020-05-22
 Bangladesh hCoV-19/Bangladesh/DU_50768/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G4201T C12369T C14408T G20438T A23403G C26527T G29587A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_451150 MT509501
 2020-05-06 2020-05-23
 India SARS-CoV-2/human/IND/GBRC105/2020
 C241T C3037T C3634T C7420T C12970T C14408T C15324T C21575T G22047T A23403G

EPI_ISL_451245
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL084/2020
 C241T C1059T C3037T C3045T C14408T C14786T C15720T C23277T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451253
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL092/2020
 C241T C1059T C3037T C14408T A21014G A23403G G25563T G27667T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451255
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL094/2020
 C241T C1059T C3037T C3045T C14408T C14786T C15720T C23277T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451256
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL095/2020
 C241T C1059T C3037T C14408T T14592G T21802C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451257
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL096/2020
 C241T C1059T C3037T C14408T T14592G T21802C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451258
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL097/2020
 C241T C1059T C3037T A13815C C14408T T14592G T21802C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451260
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL099/2020
 C241T C1059T C3037T C14408T T14592G T21802C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451261
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL100/2020
 C241T C1059T C3037T C3045T C14408T C14786T C15720T C23277T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451262
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL101/2020
 C241T C1059T C3037T C14408T T14592G T21802C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451263
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL102/2020
 C241T C1059T C3037T C3045T C14408T C14786T C15720T C23277T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451264
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL103/2020
 C241T C1059T C3037T A13815C C14408T T14592G T21802C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451265
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL104/2020
 C241T C1059T C3037T C4832T G9479T C14408T C19118T T21802C T21896C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451269
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL108/2020
 C241T C1059T C3037T C3045T C14408T C14786T C15720T C23277T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451270
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL109/2020
 C241T C1059T C3037T A7479G C14408T A23403G G25563T G27667T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451271
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL110/2020
 C241T C1059T C3037T C3045T C14408T C14786T C15720T C23277T A23403G G25563T C27964T G29427T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451272
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL111/2020
 C241T C1059T C3037T C5310T C14408T G15908T T21802C A23403G G25563T C27964T C28093T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451274
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL113/2020
 C241T C1059T C3037T C14408T A21014G A23403G G25563T G27667T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451276
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL115/2020
 C241T C1059T C3037T C14408T T14592G T21802C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451277
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL116/2020
 C241T C1059T C3037T A13815C C14408T T14592G T21802C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451278
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL117/2020
 C241T C1059T C3037T C9491T G9791A C14408T T21802C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451279
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL118/2020
 C241T C1059T C3037T A13815C C14408T T14592G T21802C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451282
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL121/2020
 C241T C1059T C3037T A7479G C14408T A23403G G25563T G27667T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451283
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL122/2020
 C241T C1059T C3037T C14408T A21137G T21802C A23403G G25563T C27964T C28093T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451284
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL123/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451285
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL124/2020
 C241T C1059T C3037T C3045T C14408T C14786T C15720T C23277T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451286
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL125/2020
 C241T C1059T C3037T C14408T T14592G T21802C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451289
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL128/2020
 C241T C1059T C3037T C14408T T14592G T21802C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451290
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL129/2020
 C241T C1059T C3037T G7065A C14408T T14592G T21802C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451291
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL130/2020
 C241T C1059T C3037T C14408T T14592G T21802C A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451292
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL131/2020
 C241T C1059T C3037T A7479G C14408T A23403G G25563T G27667T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451293
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL132/2020
 C241T C1059T C3037T C3045T C14408T C14786T C15720T C23277T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451294
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL133/2020
 C241T C1059T C3037T C3045T C14408T C14786T C15720T C23277T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451295
 2020-05-06 2020-05-24
 United States hCoV-19/USA/LA-EVTL134/2020
 C241T C1059T C3037T C3045T C14408T C14786T C15720T C23277T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_452884
 2020-05-06 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0183/2020
 C222- C241T C3037T T4387C A11794G C14408T G19648A A22320G A23403G GGG28881AAC

EPI_ISL_455104
 2020-05-06 2020-05-29
 Sweden hCoV-19/Sweden/20-51264/2020
 C241T C1059T C3037T T5182C C14408T T18822C G18951T C23202T A23403G G24368T G25563T

EPI_ISL_455749
 2020-05-06 2020-06-01
 India hCoV-19/India/RMRC103/2020
 G674T C2143T T10679C A14125G G22468T A25381C T28144C G28326T G28878A CAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29686-

EPI_ISL_455754
 2020-05-06 2020-06-01
 India hCoV-19/India/RMRC112/2020
 C241T C3037T G3085T C3634T C14408T C15324T G16738C C21646T A23403G G28001T TCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29685-

EPI_ISL_456773
 2020-05-06 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A792G C3037T C14408T C16289T A23403G G25183A T25222C G25429T G29557T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456807
 2020-05-06 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G A6821G A9458G G11083T C11344T C14805T T17247C T21033C G26144T C26750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456829
 2020-05-06 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G C6896T -11075TTT G11083T C11344T C14805T T17247C T21033C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456949
 2020-05-06 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB4515/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_457460 LR814200
 2020-05-06 2020-06-02
 United Kingdom NORW-EB979
 ATTA1- C241T C3037T A9749G C14408T A23403G A24232G G25429T G27788T

EPI_ISL_457465 LR814176
 2020-05-06 2020-06-02
 United Kingdom NORW-EB9D3
 ATTAAAG1- C241T C3037T C10030T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_457467 LR814130
 2020-05-06 2020-06-02
 United Kingdom NORW-EBA3A
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T4078Y C13862T C14408T T19330C A23403G C28836T

EPI_ISL_457472 LR814192
 2020-05-06 2020-06-02
 United Kingdom NORW-EBA94
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2940T C3037T C4543T C14408T C21648T A23403G

EPI_ISL_457475 LR821858
 2020-05-06 2020-06-02
 United Kingdom NORW-EBAD0
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T1209C ATG1605- A6024R T8053Y C8917T C10543T C16349T C17898T C26058Y C27128T

EPI_ISL_457482 LR814149
 2020-05-06 2020-06-02
 United Kingdom NORW-EBB64
 C241T C3037T A9749G C14408T A23403G A24232G G25429T G27788T

EPI_ISL_457486 LR821831
 2020-05-06 2020-06-02
 United Kingdom NORW-EBBBF
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1069A C3037T G6368A G11042A C14408T C15240T A23403G GGG28881AAC G29648T

EPI_ISL_457487 LR814263
 2020-05-06 2020-06-02
 United Kingdom NORW-EBBCE
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1684T C2940T C3037T T7228C C14408T A23403G T23563Y

EPI_ISL_457488 LR821972
 2020-05-06 2020-06-02
 United Kingdom NORW-EBBEC
 AT1- C241T C3037T C8655T A9749G C14408T A23403G A24232G G25429T G27788T

EPI_ISL_457489 LR814121
 2020-05-06 2020-06-02
 United Kingdom NORW-EBBFB
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A9749G C14408T A23403G A24232G G25429T G27788T

EPI_ISL_457490 LR814141
 2020-05-06 2020-06-02
 United Kingdom NORW-EBC07
 ATTAAAGGTTTATAC1- C241T C3037T C14408T A23403G A23570T G26062T A28358M GGG28881AAC

EPI_ISL_457498 LR814224
 2020-05-06 2020-06-02
 United Kingdom NORW-EBCAD
 C241T C1684T C2940T C3037T T7228C C14408T A23403G

EPI_ISL_457499 LR821980
 2020-05-06 2020-06-02
 United Kingdom NORW-EBCE9
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T G1069A C3037T C6250T G6368A C14408T A23403G GGG28881AAC

EPI_ISL_457504 LR815568
 2020-05-06 2020-06-02
 United Kingdom NORW-EBD40
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A23403G A23570T G26062T GGG28881AAC

EPI_ISL_457505 LR821823
 2020-05-06 2020-06-02
 United Kingdom NORW-EBD5F
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G1820A C3037T A3740G C6541T C12786T G13564R C14408T A23403G C26333T GGG28881AAC

EPI_ISL_457506 LR821836
 2020-05-06 2020-06-02
 United Kingdom NORW-EBD7D
 ATTAAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457512 LR821947
 2020-05-06 2020-06-02
 United Kingdom NORW-EBDF5
 ATTAAAGGTTT1- C241T C3037T C8655T A9749G C14408T A23403G A24232G G25429T G27788T

EPI_ISL_457513 LR815567
 2020-05-06 2020-06-02
 United Kingdom NORW-EBE01
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7006T C14408T C18526T C19421T A23403G C23758T G25429T C25916T C25989Y

EPI_ISL_457514 LR822005
 2020-05-06 2020-06-02
 United Kingdom NORW-EBE10
 ATTAAAGGTTTATACC1- C241T C1713A C2940T C3037T C14408T A23403G

EPI_ISL_457517 LR821953
 2020-05-06 2020-06-02
 United Kingdom NORW-EBE6B
 ATTAAAGG1- C241T C3037T A9749G C14408T A23403G A24232G G25429T G27788T

EPI_ISL_458039
 2020-05-06 2020-06-03
 India hCoV-19/India/CCMB_C16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC G29254T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458040
 2020-05-06 2020-06-03
 India hCoV-19/India/CCMB_C19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8917T G9389A C14408T A23403G AG28877TC GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458041
 2020-05-06 2020-06-03
 India hCoV-19/India/CCMB_C15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1218T C3037T C7119T C8917T C14408T A23403G C27110T T27384C GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458042
 2020-05-06 2020-06-03
 India hCoV-19/India/CCMB_C18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1218T C3037T C8917T C14408T A23403G C25413T C27110T T27384C GGG28881AAC T29493G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458043
 2020-05-06 2020-06-03
 India hCoV-19/India/CCMB_C14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T1094C C3037T C8917T C14408T C18129T A23403G C28432T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458044
 2020-05-06 2020-06-03
 India hCoV-19/India/CCMB_C17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T1094C C3037T C8917T C14408T C18129T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458104 MT560827
 2020-05-06 2020-06-03
 India SARS-CoV-2/human/IND/GBRC144/2020
 G23A C241T C3037T C9438T C14408T A23403G

EPI_ISL_458105 MT560673
 2020-05-06 2020-06-03
 India SARS-CoV-2/human/IND/GBRC145/2020
 C241T C3037T C9438T C14408T A23403G

EPI_ISL_459935
 2020-05-06 2020-06-05
 India hCoV-19/India/MaxCov0033_CSIR-IGIB/2020
 C1707Y C6310M C6312A T6942W G11083T G12685K C13730T C14925Y A19416G A20054W CT20429YY T21318Y T21363Y G21422K AA21550MW C23929T T24622Y C28311T

EPI_ISL_459994
 2020-05-06 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20455/2020
 C241T C1059T C3037T A5011M C9165T G11083T C14408T A23403G G25563T

EPI_ISL_459997
 2020-05-06 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20458/2020
 C241T C1059T C2910T C3037T C13694T C14408T C19660T A23403G G25563T G28882T

EPI_ISL_459998
 2020-05-06 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20459/2020
 C241T C1059T C3037T A10333G A13108G C14408T C17410T C21721T A23403G G25563T C25961T

EPI_ISL_460034
 2020-05-06 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20496/2020
 A187G C241T T2698C C3037T C14408T C16376T A23403G C25156T C25916T C29530A

EPI_ISL_460556
 2020-05-06 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20508/2020
 C241T C1059T T1703Y C3037T A5011M C14267T C14408T T18471Y A23403G G25563T G27147K C28893T

EPI_ISL_461213
 2020-05-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T G23262A A23403G C26735T C27509T GGG28881AAC G29425T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461214
 2020-05-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C6633T C11109T C14408T C21638T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461215
 2020-05-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T T9043C C14408T T18623C C20148T C21646T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461216
 2020-05-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C14408T T18623C C20148T C21646T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461217
 2020-05-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C6633T C11109T C14408T C21638T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461311
 2020-05-06 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C14408T T18623C C20148T C21646T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461378
 2020-05-06 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461379
 2020-05-06 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461380
 2020-05-06 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461711
 2020-05-06 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4454/2020
 C241T C3037T G6831A C14408T C16289T A23403G G25429T G29747T

EPI_ISL_461714
 2020-05-06 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4517/2020
 C241T C3037T A8032G C14408T C18788T T19839C A23403G A24862G GGG28881AAC

EPI_ISL_461716
 2020-05-06 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4533/2020
 C241T C3037T C14408T A20268G A23403G C28854T C29541T

EPI_ISL_461718
 2020-05-06 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4535/2020
 C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC

EPI_ISL_461719
 2020-05-06 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4536/2020
 C241T C1101T C3037T C6843T C7011T C14408T A23403G A25798G GGG28881AAC

EPI_ISL_461723
 2020-05-06 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4552/2020
 C241T C3037T C14408T A20268G A23403G C26873T C28854T

EPI_ISL_461725
 2020-05-06 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4557/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G

EPI_ISL_461726
 2020-05-06 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4558/2020
 C241T C3037T C14408T A20268G A23403G GG26466TC C28854T

EPI_ISL_461727
 2020-05-06 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4559/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G

EPI_ISL_461728
 2020-05-06 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4560/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G

EPI_ISL_461729
 2020-05-06 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4563/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_462270
 2020-05-06 2020-06-08
 Belgium hCoV-19/Belgium/VAM-0506416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8626T A11839G C14408T C16575T T19839C A23403G G25455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462393
 2020-05-06 2020-06-08
 Singapore hCoV-19/Singapore/275/2020
 C6310A C6312A G8615R G11083T C13730T C19524T G19999T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_463650 MT642224
 2020-05-06 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1160/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463654 MT642251
 2020-05-06 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1164/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463669
 2020-05-06 2020-06-10
 United States hCoV-19/USA/WA-S1179/2020
 ATTAAAGGTTTATAC1- C241T A19308G A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463670 MT642245
 2020-05-06 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1180/2020
 ATTAAAGGTTTATACCTTCCCAG1- G1401A C8782T A10785G C17747T A17858G C18060T C26322T T28144C C29367T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_463671 MT642350
 2020-05-06 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1181/2020
 ATTAAAGGTTT1- C8782T G15406A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463674
 2020-05-06 2020-06-10
 United States hCoV-19/USA/WA-S1184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C2701T C3037T C4206T C14408T A23403G G25563T G27376T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463675 MT642414
 2020-05-06 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1185/2020
 ATTAAAGGTTTAT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463676
 2020-05-06 2020-06-10
 United States hCoV-19/USA/WA-S1186/2020
 ATTAAAGGTT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463677 MT642348
 2020-05-06 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1187/2020
 ATTAAAGGT1- G1401A C1403T C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463686 MT642180
 2020-05-06 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1196/2020
 ATTAAAGGTTTAT1- C241T C3037T A4197G A10164G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463687 MT642234
 2020-05-06 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1197/2020
 ATTAAAGGTTTATACCT1- G1401A C5002T C8782T A10785G C17747T A17858G C18060T C26322T T28144C C29367T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463688 MT642157
 2020-05-06 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1198/2020
 ATTAAAGGTTTATA1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463689 MT642103
 2020-05-06 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1199/2020
 AT1- C241T A2161G C3037T C4993T A10323G C14408T A15593G C16376T C18877T A23403G G25563T T28861C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463690 MT642164
 2020-05-06 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1200/2020
 ATTAAAGGTTTAT1- C241T C3037T C12974T C14408T C15368T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463694 MT642168
 2020-05-06 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1204/2020
 AT1- C241T A2161G C3037T C4993T C14408T A15593G C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463696 MT642387
 2020-05-06 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1206/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_467002 LR824108
 2020-05-06 2020-06-12
 Switzerland 130006
 C241T C3037T C14408T C19170T G19481K G19509A A23403G T24115C GGG28881AAC

EPI_ISL_467937 MT635650
 2020-05-06 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T G410T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C G29540A C29870A

EPI_ISL_467938 MT635651
 2020-05-06 2020-06-15
 United States SARS-CoV-2/human/USA/VA-DCLS-0336/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C G29540A C29870M

EPI_ISL_468113
 2020-05-06 2020-06-16
 United States hCoV-19/USA/OR-OHSU-0151/2020
 C241T C1059T C3037T C14408T A15011T G15340T A23403G G25563T

EPI_ISL_468117
 2020-05-06 2020-06-16
 United States hCoV-19/USA/OR-OHSU-0173/2020
 C241T C1059T C2973T C3037T C11916T C14408T A23403G G25563T G28027T G29742T

EPI_ISL_468436 MT628170
 2020-05-06 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C379A C1059T C3037T T9440A C14408T A23403G G23429T G25012A G25563T A27062G

EPI_ISL_468470 MT628198
 2020-05-06 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1524/2020
 A1- A35W C37Y C241T C379A C1059T G2900A C3037T G3890R C14408T A23403G G25563T A29903-

EPI_ISL_468471 MT628199
 2020-05-06 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1525/2020
 C241T C379A C1059T C3037T G11893T A11903G C12747Y C14408T C15450T G16707T G19552R A23403G C24096Y A24922G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468718 MT620766
 2020-05-06 2020-06-15
 United States SARS-CoV-2/human/USA/UF-13/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C5183T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_469466
 2020-05-06 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469481
 2020-05-06 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T C18526T G21724T A23403G C26176T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469490
 2020-05-06 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469494
 2020-05-06 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C51D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C4206T T12629C C14408T A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469505
 2020-05-06 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C4E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469517
 2020-05-06 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C5A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469525
 2020-05-06 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471584
 2020-05-06 2020-06-22
 India hCoV-19/India/CCMB_C21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C3037T C6312A G11083A C13458T C14408T C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471981
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/England/EXET-13761C/2020
 C241T C2878T C3037T A3938G C4832T C14408T A23403G GGG28881AAC

EPI_ISL_472692
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15D285/2020
 C241T C3037T C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_473296
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16344A/2020
 ATTAAAGGTTTATACC1- C241T C3037T C6406T C14408T A23403G GGG28881AAC G29777T

EPI_ISL_473297
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T T3873C G10097A T13216G C14408T G17259T A23403G C23731T G27430T GGG28881AAC G29800T

EPI_ISL_473306
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F08A/2020
 C241T T1885C C3037T C14408T C21409A C21575T A23403G GGG28881AAC

EPI_ISL_473318
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F187/2020
 C241T C1917T C3037T C3373A C3923A C11195T A11384C C12738T C14408T G17523T A23403G GGG28881AAC

EPI_ISL_473319
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F6B5/2020
 C241T C3037T C4347T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_473357
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F9AD/2020
 C241T C3037T G6710T C14408T A23403G GGG28881AAC

EPI_ISL_473796
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4579/2020
 C241T C3037T C6472T C7815T G13397A C14408T A20268G C21682T A23403G

EPI_ISL_474075
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163D4F/2020
 AT1- C241T C3037T C9438T C14408T A23403G GGG28881AAC G29777T

EPI_ISL_474077
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163D6D/2020
 A1- C241T C3037T C9438T C14408T A23403G C26509T GGG28881AAC C29666A ACGATCG29749- G29777T

EPI_ISL_474168
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1643A6/2020
 ATTA1- C241T C3037T G8612T C9438T C14408T A23403G GGG28881AAC G29777T

EPI_ISL_474171
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1643D3/2020
 C203Y C241T C3037T T9743Y C14408T C14741T T18324Y C22997Y A23403G T24923Y G25459K

EPI_ISL_474187
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1644FE/2020
 ATTAAAGGTTTATACC1- C241T G1148T C1627T C3037T C6582T C14408T A23403G GGG28881AAC

EPI_ISL_474193
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164555/2020
 ATTA1- C241T C3037T C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_475356
 2020-05-06 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C1EF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C11919T C14408T A23403G GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475570
 2020-05-06 2020-06-23
 Bangladesh hCoV-19/Bangladesh/JUST-GC15.09/2020
 A1163T C3037T C14408T G15372T A23403G C25465T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_477004
 2020-05-06 2020-06-27
 Belgium hCoV-19/Belgium/rega-0506487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8140T C8394T C14408T C19834T A23403G A28765G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477672 MT679196
 2020-05-06 2020-06-29
 United States SARS-CoV-2/human/USA/VA-DCLS-0466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2113T C3037T T5941C C7765T C14408T C17690T C18877T A22438T A23403G G25563T T27672C T29867W C29870A

EPI_ISL_479085
 2020-05-06 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1CCE/2020
 C241T C1714T C3037T C14408T A20268G A23403G C28854T AAAAAAAAAAAAAAA29889-

EPI_ISL_479118
 2020-05-06 2020-06-30
 United Kingdom hCoV-19/England/OXON-B2128/2020
 C241T C3037T C7945T C12853T C14408T T15047C A23403G GGG28881AAC TACGATCGAGTGTACAGTGAACAATGC29748- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_479518
 2020-05-06 2020-06-30
 India hCoV-19/India/NIV-22048/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C3117T C3634T G4128T T13387C C15324T G20397T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480280
 2020-05-06 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV196/2020
 C241T C2113T C3037T T5820C C7765T C14408T C17690T C18877T A23403G G25563T

EPI_ISL_480917 MT704084
 2020-05-06 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0266/2020
 ATTAAA1- C241T C3037T C14408T C18877T A23403G G25563T C25904T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480918 MT704085
 2020-05-06 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0267/2020
 ATTA1- C241T C1059T C3037T C5183T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480921 MT704088
 2020-05-06 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0270/2020
 ATTAAAGGTT1- C241T C1059T C3037T C5183T A6995C C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_481233
 2020-05-06 2020-07-02
 Belgium hCoV-19/Belgium/UGent-142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G377T C1059T C3037T T14103C C14408T G18027T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481714
 2020-05-06 2020-07-03
 Finland hCoV-19/Finland/6May47S11/2020
 C241T C1059T C3037T C9565T A11983G C14408T A19838C A23403G G24368T C24536T T24544G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481773
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DA0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T A1699G C3037T C14408T C19066A A23403G C25797T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481775
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D86E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481828
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D88C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210K ATG1605- C1912T C6843Y G25850A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481830
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D92F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481856
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D85F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481857
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481871
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D8C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481904
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481912
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D8B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T G15982T T16446C A23403G C25528T C26447T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481917
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D8E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T A12466G C14408T C20405T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481946
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T G27506T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481951
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D87D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24077T G25681A G26365T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482073
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599DEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T G29736C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_482089
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599E43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1441T C3037T C14408T A21917G A23403G G24368T A25531G G25563T A26096G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482090
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599EDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482104
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599DBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482108
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599DCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4683Y C14408T A23403G T25260Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482111
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599D91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5425T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482113
 2020-05-06 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599DDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482413
 2020-05-06 2020-07-03
 United States hCoV-19/USA/OR-PROV-158/2020
 A2550G G11083T C14805T G26144T

EPI_ISL_482414
 2020-05-06 2020-07-03
 United States hCoV-19/USA/OR-PROV-159/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T G28027T G29742T

EPI_ISL_482415
 2020-05-06 2020-07-03
 United States hCoV-19/USA/OR-PROV-161/2020
 C241T C1059T C3037T T3312C T8041C C14408T C19274A A23403G G25563T G29474T

EPI_ISL_482416
 2020-05-06 2020-07-03
 United States hCoV-19/USA/OR-PROV-163/2020
 C241T C3037T C11563T C14408T C18877T A23403G G24550A G25563T

EPI_ISL_483331
 2020-05-06 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0746-IPL/2020
 ATTA1- C241T C313T C823T C3037T G4319A C14408T A23403G G28817T GGG28881AAC

EPI_ISL_484317
 2020-05-06 2020-07-08
 United Kingdom hCoV-19/England/NORT-29DDB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13452T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484318
 2020-05-06 2020-07-08
 United Kingdom hCoV-19/England/NORT-29DE0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10790T C14408T C17463T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486228 MT750417
 2020-05-06 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C1059T C3037T C14408T A23122R A23403G G25563T G29384T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486229 MT750418
 2020-05-06 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1957/2020
 AT1- C241T C1059T C3037T T8022C C14408T A23403G T24097C G25563T T25902W T25908W G25913S G28460A A28860G G29384T

EPI_ISL_486230 MT750419
 2020-05-06 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23122R A23403G G25563T T25902W T25908W G25913S G29384T

EPI_ISL_486231 MT750420
 2020-05-06 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1959/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23122R A23403G G25563T T25902W T25908W G25913S G29384T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486232
 2020-05-06 2020-07-10
 United States hCoV-19/USA/CA-CZB-1960/2020
 AT1- C241T C1059T C3037T C14408T A23122R A23403G G25563T T25902W T25908W G25913S C26408Y G27008R G29384T

EPI_ISL_486233
 2020-05-06 2020-07-10
 United States hCoV-19/USA/CA-CZB-1961/2020
 ATTA1- A30R C241T C1059T C3037T T3877K C14408T A23403G G25563T G29384T

EPI_ISL_486234 MT750421
 2020-05-06 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1962/2020
 AT1- C241T C1059T C3037T C14408T A23403G G25563T G29384T T29867Y

EPI_ISL_486235 MT750422
 2020-05-06 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1963/2020
 ATTAAAGGTTT1- C241T C1059T C2716T C3037T C14408T A23122R A23403G G25563T T25902W T25908W G25913S G29384T

EPI_ISL_486236
 2020-05-06 2020-07-10
 United States hCoV-19/USA/CA-CZB-1964/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T G29384T

EPI_ISL_486237 MT750423
 2020-05-06 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1965/2020
 A1- C241T C1059T C3037T C14408T A23122R A23403G G25563T T25902W T25908W G25913S G29384T T29867Y

EPI_ISL_486238 MT750424
 2020-05-06 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23122R A23403G G25563T T25902W T25908W G25913S G29384T

EPI_ISL_486239
 2020-05-06 2020-07-10
 United States hCoV-19/USA/CA-CZB-1967/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T C22326Y A23122R A23403G G25563T T25902W T25908W G25913S G29384T

EPI_ISL_486240
 2020-05-06 2020-07-10
 United States hCoV-19/USA/CA-CZB-1968/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C320S C1059T C3037T C14408T A22904M A23122R A23403G G25563T T25902W T25908W G25913S G29384T

EPI_ISL_486241 MT750425
 2020-05-06 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1969/2020
 ATTA1- C241T C1059T C2716Y C3037T C14408T A23122R A23403G G25563T T25902W T25908W G25913S G29384T

EPI_ISL_486242
 2020-05-06 2020-07-10
 United States hCoV-19/USA/CA-CZB-1970/2020
 ATT1- C241T C3037T C14408T G21255C A23122R A23403G T28130Y GGG28881AAC G28960T

EPI_ISL_486243 MT750426
 2020-05-06 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G247K C320S C3037T C6040T C14408T T15669C A20268G A23122R A23403G T25902W T25908W G25913S G29734C

EPI_ISL_486249 MT750430
 2020-05-06 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C379A C1059T C1170T C3037T C4456Y G11083K C14408T C20283Y C22224T A22904M A23122R A23403G G25563T T25902W T25908W G25913S T27318A G28703T

EPI_ISL_486250 MT750431
 2020-05-06 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C379A C1059T C1170T C3037T C14408T C22224T A22904M A23122V A23403G G25563T T25902W T25908W G25913S T27318A G28703T

EPI_ISL_486331 MT750487
 2020-05-06 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2088/2020
 ATTAAAGGTTTA1- C241T C3037T C8327T C14408T A23122R A23403G A24862G T28009C AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_486332 MT750488
 2020-05-06 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2089/2020
 AT1- C241T C1059T C1887T C3037T G10523C C14408T A23403G G25563T

EPI_ISL_487657
 2020-05-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7321T C10798A T13716C C13862T C14408T A23403G C28836T C29171T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487776
 2020-05-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C9195T C12915T C14120T C14408T A20268G A23403G G27987T C28775T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487866
 2020-05-06 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C12915T C14408T A20268G A23403G G27987T C28775T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488058
 2020-05-06 2020-07-14
 United Kingdom hCoV-19/England/NORT-29E1C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3552T T3883G A4233G C5178T A5452G T7534C C9924T C14408T C21614Y C22326T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488118
 2020-05-06 2020-07-14
 United Kingdom hCoV-19/England/NORT-29E005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6693G C14408T G22785T A23403G C25350T C26078T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488133
 2020-05-06 2020-07-14
 United Kingdom hCoV-19/England/NORT-29DD96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1102T C1627T C3037T C8334T A10194C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488162
 2020-05-06 2020-07-14
 United Kingdom hCoV-19/England/NORT-29E24B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C4158T C14408T C21575T A23403G G28003T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488171
 2020-05-06 2020-07-14
 United Kingdom hCoV-19/England/NORT-29E22D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C4158T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489079
 2020-05-06 2020-07-14
 United Kingdom hCoV-19/England/NORT-291F23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C2306T C3037T A14061G C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489081
 2020-05-06 2020-07-14
 United Kingdom hCoV-19/England/NORT-291E80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8042A G10097A C14408T G18028T G21724T A23403G C23731T G25429T C25714T G27762T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489088
 2020-05-06 2020-07-14
 United Kingdom hCoV-19/England/NORT-291FD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C344T C3037T G10097A C14408T C21077T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489122
 2020-05-06 2020-07-14
 United Kingdom hCoV-19/England/NORT-292186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489150
 2020-05-06 2020-07-14
 United Kingdom hCoV-19/England/NORT-291EDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7093Y G8042A G10097A C14267Y C14408T C16616T T22092A A23403G C23731T C25714T G28580T GGG28881AAC G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490584
 2020-05-06 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C1C43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1473T C3037T G7798T C10039T C14408T A20268G A23403G TTTTAAAGTTTCCATTTGGAATCTTGA27264- C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490604
 2020-05-06 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C6561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T C12880T C14408T G18859T G21624T A23403G GGG28881AAC TACAGTGAACAATGCTA29760- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490607
 2020-05-06 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C73DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18747T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491145
 2020-05-06 2020-07-16
 Oman hCoV-19/Oman/B-7106/2020
 ATTAAAGGTTTATAC1- C241T C392T G1944A C3037T G10265A C14408T C15328T C16293T G22346A A23403G G28230T GGG28881AAC G29516A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_492860
 2020-05-06 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C1097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T C14408T C21691T A23403G C25047T G28086T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492893
 2020-05-06 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C1158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3263G G7071R C9474T C14408T A16734G C21691T A23403G C25047T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492899
 2020-05-06 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C110D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T14619W T16419C G21718T A23403G GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493498
 2020-05-06 2020-07-21
 United Kingdom hCoV-19/England/NORT-29DD2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C18131T A23403G C23731T C25836T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493499
 2020-05-06 2020-07-21
 United Kingdom hCoV-19/England/NORT-29DE1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T A24819G T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493500
 2020-05-06 2020-07-21
 United Kingdom hCoV-19/England/NORT-29DEDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493501
 2020-05-06 2020-07-21
 United Kingdom hCoV-19/England/NORT-29DF45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493502
 2020-05-06 2020-07-21
 United Kingdom hCoV-19/England/NORT-29DF72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5144T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493504
 2020-05-06 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26305T G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493506
 2020-05-06 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E08D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11830G C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493510
 2020-05-06 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E25A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174C C241T C3037T G10097A T13216G C14408T C17119T A19960G C22530T A23403G C23731T GGG28881AAC G29374T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493512
 2020-05-06 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C4158T C14408T C21575T A23403G G28003T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493905
 2020-05-06 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493906
 2020-05-06 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494452
 2020-05-06 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1231/2020
 ATTAAAGGTTTATACC1- C241T C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T

EPI_ISL_494457
 2020-05-06 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1385T C3037T C11941T C14408T A20268G G22021T A23403G C28854T

EPI_ISL_494459
 2020-05-06 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1255/2020
 ATTAAAGG1- T11C C241T C3037T G3485A A6342G C9474T C14408T A20268G A23403G C28854T

EPI_ISL_494460
 2020-05-06 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T A12082T G13403A C14408T A20268G C21595T A23403G T25942C C28854T

EPI_ISL_494473
 2020-05-06 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T

EPI_ISL_495685
 2020-05-06 2020-07-23
 United States hCoV-19/USA/WA-S1235/2020
 ATT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495686 MT821538
 2020-05-06 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1236/2020
 A1- C241T A2161G C3037T C4993T A10323G C14408T A15593G C16376T C18877T A23403G G25563T T28861C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_500988
 2020-05-06 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14362T C14408T A23403G GGG28881AAC C29514T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501012
 2020-05-06 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1065FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A23902T T24565A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501052
 2020-05-06 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14362T C14408T A23403G GGG28881AAC C29514T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501155
 2020-05-06 2020-07-30
 United States hCoV-19/USA/WA-UW-8686/2020
 ATTAAAGGTTTATA1- TCCC18GGGA C241T C1059T C3037T A12557C TA14222GC C14408T T21146A A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501156
 2020-05-06 2020-07-30
 United States hCoV-19/USA/WA-UW-8803/2020
 ATTAAAGGTTTATA1- TCCC18GGGA AAC34TTT C241T C1059T C3037T A12557C A13512T C14120T TA14222GC C14408T T21146A A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_507191
 2020-05-06 2020-08-03
 United Kingdom hCoV-19/Scotland/EDB6701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2306T C3037T C10798A C13862T C14408T A23403G C28836T CCACGCGGAGTACGATCGAGTGT29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507192
 2020-05-06 2020-08-03
 United Kingdom hCoV-19/Scotland/EDB6703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10523C C14408T T20592C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508379
 2020-05-06 2020-08-04
 India hCoV-19/India/IK53/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C5812T C8860T C14408T A23403G A25253G G28221T G29868A

EPI_ISL_508380
 2020-05-06 2020-08-04
 India hCoV-19/India/IK54/2020
 ATTA1- G1820A A3428C C7945T C8782T C11344T G12514T C17143T G22468T T28144C G28878A G29474T G29742A G29868A

EPI_ISL_508381
 2020-05-06 2020-08-04
 India hCoV-19/India/IK55/2020
 C241T C3037T T8503C C14408T G21724T A23403G G25699T G29773T G29868A

EPI_ISL_508504
 2020-05-06 2020-08-04
 India hCoV-19/India/TF38/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C28G C241T C3037T C5884T C14408T A23403G C26060T GGG28881AAC G29734C G29868A

EPI_ISL_509709 MT844021
 2020-05-06 2020-08-05
 United States SARS-CoV-2/human/USA/UT-CDC-9782/2020
 C241T C1191T C3037T C5184T C7318T C14408T A23403G C26256T C29668T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509847 MT846531
 2020-05-06 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T G2579A C3037T C5183T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510551
 2020-05-06 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2213/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510824
 2020-05-06 2020-08-07
 Sweden hCoV-19/Sweden/20-51279/2020
 C241T C1059T C3037T C14408T T20146C A23403G G24368T G25563T C29502T

EPI_ISL_511104
 2020-05-06 2020-08-07
 Portugal hCoV-19/Portugal/PT0845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T T505C C3037T C3261T C3817T C4633T C8326T C14408T A15984T G20679T C20946T C20956A A23403G G28739T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511683
 2020-05-06 2020-08-08
 Portugal hCoV-19/Portugal/PT1136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C19041T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511684
 2020-05-06 2020-08-08
 Portugal hCoV-19/Portugal/PT1137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C4582T C14408T G14653T A19443G A20742C A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_513170
 2020-05-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH605/2020
 C241T C3037T C8782T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513171
 2020-05-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH606/2020
 C241T C3037T C14408T A23403G G25563T C26735T

EPI_ISL_513172
 2020-05-06 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH609/2020
 C241T C3037T T4346G T7292C C14408T C18877T A25472T C26735T G29527T C29580T G29705T

EPI_ISL_514618 MT892965
 2020-05-06 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1399/2020
 ATT1- C344T G5017T C8782T G14350T A17858G C18060T A24694T T28144C C28310A G28812T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_516694 MT913129
 2020-05-06 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0813/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T G3644A C14408T A23403G G25563T G25879T T27447C

EPI_ISL_516696 MT913131
 2020-05-06 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C18606T C18795T A23403G G25563T C25658T G29692T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_516699 MT913133
 2020-05-06 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0825/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_516700 MT913134
 2020-05-06 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0826/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G T25027C G25563T T27447C C28868T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_516701 MT913135
 2020-05-06 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0828/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C14408T A23403G G25563T C25658T C25665T C29870A

EPI_ISL_516705 MT913139
 2020-05-06 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T T809C C1059T C3037T C3225T C8293T C14408T C15240T G16912T A18941C A23403G G25091T G25563T C25658T C29870A

EPI_ISL_516706 MT913140
 2020-05-06 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T C16260T A20003G A23403G G25563T G26690T C28821A C29555T C29870A

EPI_ISL_516708 MT913142
 2020-05-06 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0841/2020
 AT1- C241T C3037T C3159A C5183T C14408T C18877T A23403G G25563T G28086T T29646C CCGAGG29732-

EPI_ISL_516710 MT913144
 2020-05-06 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1938T C3037T C14408T C15540T A23403G G25563T G26589A G29868A C29870A

EPI_ISL_517778 MT966126
 2020-05-06 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0888/2020
 C241T C1059T C3037T A4386G T6685C C10319T C14408T A23403G G25563T ATT27759- C27964T G28763A C29250T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518855 MT919994
 2020-05-06 2020-08-25
 United States SARS-CoV-2/humans/USA/MN-MDH-1461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G5017T C8782T G14350T A17858G C18060T A24694T T28144C C28310A G28812T G29736T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523091
 2020-05-06 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-3-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T C3552T C6267T G14274A C14408T C18654T G22661T A23403G A24862G T26047G C26735T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523092
 2020-05-06 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-3-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T C3552T C6267T G14274A C14408T C18654T G22661T A23403G A24862G T26047G C26735T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523093
 2020-05-06 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-3-4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T C3552T C5497T C6267T G14274A C14408T C18654T G22661T A23403G A24862G T26047G C26735T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523094
 2020-05-06 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-3-5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T C3552T C6267T G14274A C14408T C18654T G22661T A23403G A24862G T26047G C26735T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523095
 2020-05-06 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-3-6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T C3552T C6267T G14274A C14408T C18654T G19111A G22661T A23403G A24862G T26047G C26735T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523096
 2020-05-06 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-4-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T G14274A C14408T G22021T A23403G A24862G C25936T C26013T G29294T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523469
 2020-05-06 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523497
 2020-05-06 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1340A C3037T T10561C C14408T C15324T C18828T A23403G C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523999
 2020-05-06 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-11688V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C14408T G14772T A16455T G20274T A23403G C26750T GGG28881AAC C29724T GACAAA29868-

EPI_ISL_524470
 2020-05-06 2020-08-28
 Brazil hCoV-19/Brazil/SP-259/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C8293T C14408T A22720G A23403G T27299C GGG28881AAC T29148C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_526688
 2020-05-06 2020-09-01
 United States hCoV-19/USA/NY-MH001832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C1059T C1392T C3037T G3251T C14408T A23403G G25563T C26625T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_526775
 2020-05-06 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C2113T C3037T T5941C C7765T C14408T C17690T C18877T A22438T A23403G G25563T T27672C

EPI_ISL_526776
 2020-05-06 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2113T C3037T T5941C C7765T C10969T C14408T C17690T C18877T A22438T A23403G G25563T T27672C C28603T G29862S C29870M

EPI_ISL_526777
 2020-05-06 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C21057T A23403G G25563T C29870A

EPI_ISL_526778
 2020-05-06 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0470/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T C21057T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_526780
 2020-05-06 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0472/2020
 A1- C241T C1059T C3037T C14408T C21057T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_526781
 2020-05-06 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C4795T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_526784
 2020-05-06 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T9172C C9967T A10948G C14408T A23403G G23608T C25452T G26730T GGG28881AAC C29870A

EPI_ISL_527427
 2020-05-06 2020-09-02
 United States hCoV-19/USA/CO-CSU-D1050-2/2020
 C241T C3037T C12741T C14408T A20268G A23403G G24173T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527467
 2020-05-06 2020-09-02
 United States hCoV-19/USA/CO-CSU-D2575-2/2020
 C241T TGGTCATGTTATGGT508- C1059T C3037T C4701T C8782T T13924A C14408T G17162K A23403G A23743M G23755K T25468G G25563T G27758T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527479
 2020-05-06 2020-09-02
 United States hCoV-19/USA/CO-CSU-E0462-1/2020
 C241T C1059T C3037T C6285T C14408T G20616T A23403G A24129G G25552T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527696
 2020-05-06 2020-09-04
 United States hCoV-19/USA/MN-CDC-6298/2020
 C241T ATG518- C1059T C3037T C14408T A23403G A25246C G25437T G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_530088
 2020-05-06 2020-09-10
 Spain hCoV-19/Spain/MD-LP92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534319
 2020-05-06 2020-09-13
 Brazil hCoV-19/Brazil/SP-255/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C12053T C14408T A23403G G25088T GGG28881AAC C28887T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_534963
 2020-05-06 2020-09-14
 United Kingdom hCoV-19/England/OXON-B45DF/2020
 C241T C3037T C14408T T18398C A23403G G24781T T25631C GGG28881AAC

EPI_ISL_534964
 2020-05-06 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4654/2020
 C241T C1441T C3037T C5526T G11083T C14408T T18398C A23403G G24781T GGG28881AAC CGATC29750- A29871W AAAAAAAAAAAA29892-

EPI_ISL_536426
 2020-05-06 2020-09-16
 Singapore hCoV-19/Singapore/885/2020
 ATTA1- C6310A C6312A G11083T C13730T C19524T G20006T C20647T C23185T C23929T C28311T G28423T AAAAAAAAAAAA29892-

EPI_ISL_536521
 2020-05-06 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-123/2020
 AT1- C241T C3037T C14408T C18568T C21622A A23403G A26530G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_542894
 2020-05-06 2020-09-23
 United States hCoV-19/USA/TX-HMH-1898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19011T A23403G G28378T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545082
 2020-05-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-2043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3702T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559684
 2020-05-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-4882D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T C14408T C22458T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568972
 2020-05-06 2020-10-02
 France hCoV-19/France/IHU-0808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T G18397T A23403G G25563T G25767T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568974
 2020-05-06 2020-10-02
 France hCoV-19/France/IHU-0811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C2910T C3037T G8371T C14408T A23403G G25563T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_568975
 2020-05-06 2020-10-02
 France hCoV-19/France/IHU-0813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T A5829G G9479T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569611
 2020-05-06 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1913T C2143T C3037T C14408T G20274T A23403G G25563T C26625T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

LR814131
 2020-05-06 2020-06-16
 United Kingdom NORW-EBE4D
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G A23570T G26062T TTGCTTTAGCACTCAAT27564- GGG28881RRS

LR814231
 2020-05-06 2020-06-16
 United Kingdom NORW-EBB19
 A1- C241T C3037T T6142C A8528R A11991G C14408T C16699T G17338T C17456T G22992A A23403G -27313A C27371T GGG28881AAC

MT642435
 2020-05-06 2020-06-18
 United States SARS-CoV-2/human/USA/CA-S1179/2020
 ATTAAAGGTTTATAC1- C241T A19308G A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT786941
 2020-05-06 2020-07-21
 United States SARS-CoV-2/human/USA/COVID20-0182/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T C16349T C17676T C21110T A23403G G25563T C27964T C28846T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MT810679
 2020-05-06 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1231-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810684
 2020-05-06 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1248-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1385T C3037T C11941T C14408T A20268G G22021T A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810686
 2020-05-06 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1255-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G3485A A6342G C9474T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810687
 2020-05-06 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1256-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T A12082T G13403A C14408T A20268G C21595T A23403G T25942C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810700
 2020-05-06 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1275-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811344
 2020-05-06 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0746-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C313T C823T C3037T G4319A C14408T A23403G G28817T GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873064
 2020-05-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G6320T C14408T C16193T T23293C A23403G G25563T

MT873073
 2020-05-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01409/2020
 C241T C1059T C3037T C14408T C21646T A23403G G25563T C26625T

MT873076
 2020-05-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01381/2020
 G105T C241T C3037T C9438T C11758T C14408T C15049T C18877T A23403G G25563T T26379C

MT873108
 2020-05-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01397/2020
 T13C C241T C1059T C3037T C14408T A23403G G25563T C28890T

MT873187
 2020-05-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01367/2020
 ATTAA1- C241T C1059T C3037T C14408T C16260T G21604T A23403G G25563T G27147T C27879T C28821A G29449T

MT873201
 2020-05-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01372/2020
 C241T C1059T C3037T C5849T C14408T G22289T A23403G G25563T

MT873242
 2020-05-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01407/2020
 ATTAAA1- C241T C1059T C3037T T9429C G11083T C11916T C14408T C18998T G19525T A20553G G21724C C21757T A23403G G25563T G29540A

MT873245
 2020-05-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01467/2020
 C241T C3037T C10369T C14408T C16830T C22326T A23403G

MT873324
 2020-05-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01405/2020
 C241T C3037T G4951A G9584A C14408T C18877T A23403G G25563T G29279T

MT873334
 2020-05-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01380/2020
 G45C G105T C241T C3037T C14408T C18877T C19524T G21986A A23403G G25563T

MT873397
 2020-05-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01382/2020
 C241T A2104G G2624A C3037T C14408T T15096C T21656C A21993T A23403G G25244C C28603T G28899T

MT873433
 2020-05-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01365/2020
 ATTAAA1- C241T C1059T C1722T C3037T C5849T C14408T G22289T A23403G G25563T

MT873470
 2020-05-06 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01379/2020
 G105T C241T C3037T C9438T C11758T C14408T C15049T C18877T A23403G G25563T T26379C

MT967948
 2020-05-06 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6298/2020
 C241T ATG518- C1059T C3037T C14408T A23403G A25246C G25437T G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

MW001263
 2020-05-06 2020-09-14
 United States SARS-CoV-2/human/USA/251-ETA/2020
 C241T T1918C C3037T C14408T C18877T C23230T A23403G G25563T C26333T AAAAAAAAAAAAAAAAAAAAA29883-

MW001265
 2020-05-06 2020-09-14
 United States SARS-CoV-2/human/USA/251-NP-OP/2020
 C241T T1918C C3037T C14408T C18877T A21625G C23230T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW030278
 2020-05-06 2020-09-22
 Peru SARS-CoV-2/human/PER/covper047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C13138T C14408T A21131G A23403G C23731T G25650T C26029A C27213T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_448077
 2020-05-07 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AED39/2020
 C225T C241T C3037T C7777T C14408T A23403G GGG28881AAC

EPI_ISL_448081
 2020-05-07 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AF56D/2020
 C241T C3037T C14408T A23403G C25350T C28866T

EPI_ISL_448083
 2020-05-07 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AF5A9/2020
 C241T A2499G C3037T C14408T A23403G C28232T GGG28881AAC

EPI_ISL_448084
 2020-05-07 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AF5C7/2020
 C241T C3037T C14408T T17229C C18877T C21614T A23403G G24197T G25563T C26735T

EPI_ISL_448090
 2020-05-07 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AF688/2020
 C241T C3037T C6606T C14408T A20268G A23403G C28854T

EPI_ISL_448092
 2020-05-07 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AFFAB/2020
 C241T C2416T C3037T C14408T C14786T C17440T G20578T A23403G G25563T C28045A C28164A T28889C

EPI_ISL_448096
 2020-05-07 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AFFF6/2020
 C241T C3037T G4080A C5986T C14408T A23403G C23709T G27281T C28791T GGG28881AAC G29717T

EPI_ISL_448101
 2020-05-07 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1B004A/2020
 C241T C3037T C14408T C18377T A23403G G25429T C25916T

EPI_ISL_448102
 2020-05-07 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1B0059/2020
 C241T C3037T C6606T C14408T A20268G A23403G C28854T

EPI_ISL_448106
 2020-05-07 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1B0095/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_448107
 2020-05-07 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1B00A4/2020
 C241T C2110T C3037T C14408T A16607G A23403G G27358T T28642C GGG28881AAC

EPI_ISL_448108
 2020-05-07 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1B00D1/2020
 C241T C3037T C5178T C8994T C14408T A23403G C26447T GGG28881AAC

EPI_ISL_448109
 2020-05-07 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1B00FF/2020
 C241T C1170T C3037T A3522G C11379T C14408T G20464T C21575T A23403G G23501T GGG28881AAC

EPI_ISL_450833
 2020-05-07 2020-05-22
 Sweden hCoV-19/Sweden/20-51311/2020
 C241T C3037T C6883T C11152T C14408T G17014T A23403G GGG28881AAC

EPI_ISL_451149 MT509499
 2020-05-07 2020-05-23
 India SARS-CoV-2/human/IND/GBRC104/2020
 C241T C2836T C3037T G5062A G11083T C14408T C18877T C22444T A23403G G25563T C26735T C28854T G29734T

EPI_ISL_451211
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL050/2020
 C241T A385T C1059T C3037T C14408T C23170T A23403G G23587T G25563T C27964T C28854T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451243
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL082/2020
 C241T T833C C1059T C3037T C11916T C14408T A23403G G25563T C27964T G29449T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451244
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL083/2020
 C241T T833C C1059T C3037T C11916T C14408T A23403G G25563T C27964T G29449T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451248
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL087/2020
 C241T A681G C1059T C3037T G3582A C4540T G9463T C9711T C14408T G19962T A23403G G25563T C27964T A28104T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451250
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL089/2020
 C241T C1059T C3037T G11083T C14408T A17712G A23403G G25563T C29247T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451252
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL091/2020
 C241T T833C C1059T C3037T A11117G C14408T A23403G G25563T C27964T C29144T G29449T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451254
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL093/2020
 C241T C1059T C3037T G11083T C14408T A17712G A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451266
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL105/2020
 C241T C1059T C3037T G7272A C9163T C10319T C14408T A16070G A23403G G25563T T26023C C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451267
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL106/2020
 C241T C1059T C3037T G7272A C9163T C10319T C14408T A16070G A23403G G25563T T26023C C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451268
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL107/2020
 C241T C1059T C3037T G7272A C9163T C10319T C14408T A16070G A23403G G25563T T26023C C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451275
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL114/2020
 C241T C1059T C3037T T11293C C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451280
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL119/2020
 C241T C1059T C1943T C3037T T6226C C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451281
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL120/2020
 C241T C1059T A2361G C3037T C14408T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451287
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL126/2020
 C241T C1059T C1943T C3037T T4507C T6226C C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451288
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL127/2020
 C241T C1059T C1943T C3037T T6226C C14408T C21911T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451297
 2020-05-07 2020-05-24
 United States hCoV-19/USA/LA-EVTL136/2020
 C241T T833C C1059T C3037T C11916T C14408T A23403G G25563T C27964T G29449T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_452857
 2020-05-07 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AED57/2020
 C241T C3037T C7869T C8722T C14408T A23403G G28655T

EPI_ISL_452859
 2020-05-07 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AED75/2020
 C241T C1059T C3037T C5826T C14408T A23403G G25563T C26111T

EPI_ISL_452871
 2020-05-07 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AEF15/2020
 C241T C3037T C14408T A17146G A23403G GGG28881AAC

EPI_ISL_452910
 2020-05-07 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B06DF/2020
 C241T C1059T C3037T A3103C C5893T C11200T C14408T A23403G G24368T G25563T G26450T C26542T A28117T

EPI_ISL_452913
 2020-05-07 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0709/2020
 C241T C3037T C8722T C14408T T18609C G22989C A23403G G28655T

EPI_ISL_452915
 2020-05-07 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0727/2020
 C241T C3037T C8722T C14408T T18609C A23403G G28655T

EPI_ISL_452916
 2020-05-07 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0736/2020
 C241T C3037T C6040T C13059T C14408T T19791C A23403G GGG28881AAC

EPI_ISL_452917
 2020-05-07 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0745/2020
 C241T C1059T C3037T A3103C C5893T C11200T C14408T A23403G C23997T G24368T G25563T G26450T C26542T A28117T

EPI_ISL_452918
 2020-05-07 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0754/2020
 C241T C3037T C8722T C14408T T18609C A23403G G28655T

EPI_ISL_453622
 2020-05-07 2020-05-27
 United Kingdom hCoV-19/England/NOTT-111074/2020
 C241T C3037T C4002T G10097A T10388C C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_455105
 2020-05-07 2020-05-29
 Sweden hCoV-19/Sweden/20-51317/2020
 C241T C1059T C3037T C3923T C14408T T23255G A23403G G24368T G25563T C26456T A26544G

EPI_ISL_455755
 2020-05-07 2020-06-01
 India hCoV-19/India/RMRC154/2020
 C241T C3037T C14408T A23403G A29039T ATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29684-

EPI_ISL_455761
 2020-05-07 2020-06-01
 India hCoV-19/India/RMRC160/2020
 C2143T C8782T G22468T G24350A T28144C G28326T G28878A AATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29676-

EPI_ISL_455763
 2020-05-07 2020-06-01
 India hCoV-19/India/RMRC163/2020
 C2143T C8782T G22468T T28144C G28326T G28878A G29742A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_455764
 2020-05-07 2020-06-01
 India hCoV-19/India/RMRC164/2020
 C2143T C4965T C8782T C10138T C10702T G22468T T28144C G28326T G28878A TGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29691-

EPI_ISL_455765
 2020-05-07 2020-06-01
 India hCoV-19/India/RMRC165/2020
 C241T C3037T G3085T C3634T C14408T C15324T G16738C C21646T A23403G T23875C G28001T TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_455766
 2020-05-07 2020-06-01
 India hCoV-19/India/RMRC166/2020
 C2143T C4965T C8782T C10138T C10702T G22468T T28144C G28326T G28878A GTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29690-

EPI_ISL_455767
 2020-05-07 2020-06-01
 India hCoV-19/India/RMRC167/2020
 C2143T C4965T C8782T C10138T C10702T G22468T T28144C G28326T G28878A AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_455768
 2020-05-07 2020-06-01
 India hCoV-19/India/RMRC169/2020
 C6312A T8560C G11083T C11200T C13730T C16017T C23929T G24053T G24131T C28311T CAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29686-

EPI_ISL_455770
 2020-05-07 2020-06-01
 India hCoV-19/India/RMRC171/2020
 C2143T C4965T C8782T C10138T C10702T G22468T A23843T T28144C G28326T G28878A CAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29686-

EPI_ISL_456784
 2020-05-07 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C13019T A16856G C17470T G24812T C26088T T28144C G28580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456806
 2020-05-07 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A C3037T C3411T C3885T G13475T C14408T C17104T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456810
 2020-05-07 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C17012T A23403G A27655G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456830
 2020-05-07 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10626T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456835
 2020-05-07 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C5184T C12710T C27920T C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_457459 LR821847
 2020-05-07 2020-06-02
 United Kingdom NORW-EB95B
 AT1- C241T C3037T C10030T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_457461 LR821916
 2020-05-07 2020-06-02
 United Kingdom NORW-EB997
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G669K C3037T C4475T C13862T A14185G C14408T T19330C A23403G C28836T G29734C

EPI_ISL_457462 LR821984
 2020-05-07 2020-06-02
 United Kingdom NORW-EB9A6
 ATTA1- C241T C3037T C10626T C14408T A23403G G28077T GGG28881AAC

EPI_ISL_457464 LR821930
 2020-05-07 2020-06-02
 United Kingdom NORW-EB9C4
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6539T C12915T C14408T A20268G A23403G

EPI_ISL_457470 LR821902
 2020-05-07 2020-06-02
 United Kingdom NORW-EBA76
 C241T C3037T G6532T G10262A G12131A C14408T T19839C C22995T A23403G G25440T G25471C A27669G GGG28881AAC

EPI_ISL_457473 LR821948
 2020-05-07 2020-06-02
 United Kingdom NORW-EBAA3
 ATT1- C241T C1884Y C3037T C7869T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_457483 LR814167
 2020-05-07 2020-06-02
 United Kingdom NORW-EBB73
 AT1- C241T A1842G C3037T C8367T T8767C C10965T C14408T C19524T A23403G GGG28881AAC

EPI_ISL_457484 LR821940
 2020-05-07 2020-06-02
 United Kingdom NORW-EBB82
 ATTAAAGGTTTATACC1- C241T C2940T C3037T C14408T C21306T A23403G C27610Y

EPI_ISL_457491 LR821824
 2020-05-07 2020-06-02
 United Kingdom NORW-EBC25
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C635Y C3037T A4291T C12295T C14408T C18457T A23403G C24034T T28738G GGG28881AAC

EPI_ISL_457494 LR814220
 2020-05-07 2020-06-02
 United Kingdom NORW-EBC52
 ATT1- C241T C3037T G6532T G10262A G12131A C14408T T19839C C22995T A23403G G25440T G25471C A27669G GGG28881AAC

EPI_ISL_457503 LR814238
 2020-05-07 2020-06-02
 United Kingdom NORW-EBD31
 ATTAAAG1- C241T C3037T C14408T A23403G G25507R C25728T GGG28881AAC

EPI_ISL_457542 LR814012
 2020-05-07 2020-06-02
 United Kingdom NORW-EC626
 ATTAAAGGTTT1- C241T C3037T G10396T C13860T C14408T A23403G A23570T G26062T A28363G GGG28881AAC

EPI_ISL_459995
 2020-05-07 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20456/2020
 C241T C3037T C8964T C14408T A23403G

EPI_ISL_459996
 2020-05-07 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20457/2020
 C241T C1059T C3037T G11083T C14408T C19524T C20703T A23403G G25563T

EPI_ISL_460560
 2020-05-07 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20512/2020
 C241T C355T C1059T C3037T A5011M C14408T A23403G G25563T C26078T C28893T

EPI_ISL_460573
 2020-05-07 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20525/2020
 C241T C1059T T1941G C3037T C6445T A7003C T8899C C14408T A23403G G25290K G25563T

EPI_ISL_461083
 2020-05-07 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C8320T C10296T G11266T C14408T A23403G A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461084
 2020-05-07 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16474G G18972T C21855T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461085
 2020-05-07 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461086
 2020-05-07 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T T17559C C17985T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461143
 2020-05-07 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461307
 2020-05-07 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C12710T C13011T C14408T G20568A A23403G A26530G G27877T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461308
 2020-05-07 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T T17559C C17985T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461309
 2020-05-07 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T G15708T C17690T C18877T A23403G C25517G G25563T G26620T T27384C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461384
 2020-05-07 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461730
 2020-05-07 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4565/2020
 C241T C3037T C5869T C14408T C16049T A20268G A23403G C26873T C28854T

EPI_ISL_461986
 2020-05-07 2020-06-06
 United Kingdom hCoV-19/England/PORT-2CFCCB/2020
 C241T C2881T C3037T C4788T C14408T G19162T A23403G C25350T

EPI_ISL_461987
 2020-05-07 2020-06-06
 United Kingdom hCoV-19/England/PORT-2CFCDA/2020
 C241T T1333A C3037T C6968T C14408T A23403G GGG28881AAC

EPI_ISL_462271
 2020-05-07 2020-06-08
 Belgium hCoV-19/Belgium/HNF-0507417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8626T A11839G C14408T C16575T T19839C A23403G G25455T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462272
 2020-05-07 2020-06-08
 Belgium hCoV-19/Belgium/VLS-0507418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C29171T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462273
 2020-05-07 2020-06-08
 Belgium hCoV-19/Belgium/RJ-0507419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C19164T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462274
 2020-05-07 2020-06-08
 Belgium hCoV-19/Belgium/SG-0507420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462275
 2020-05-07 2020-06-08
 Belgium hCoV-19/Belgium/HI-0507421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4642A C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462865
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A38R C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_462866
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_462867
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C27686T C28854T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_462868
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_462869
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1024/2020
 ATTA1- C241T C1059T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_462870
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_462871
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1026/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_462872
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_462873
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_462874
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_462875
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1030/2020
 ATTAAAGGTTTATACC1- T17C C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_462876
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_462877
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_462878
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_462879
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T G25775T A26183G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_462881
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_462882
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25494T G25563T A26183G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_462883
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_462884
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T G2281T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_462885
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_462887
 2020-05-07 2020-06-08
 United States hCoV-19/USA/MN-MDH-1042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_463010
 2020-05-07 2020-06-09
 India hCoV-19/India/ILSCV11165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C1498T G1820A C6310A C6312A C9451T G11083T C13730T C19524T C23929T T26861C C28311T TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_463691 MT642134
 2020-05-07 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1201/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463692 MT642227
 2020-05-07 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1202/2020
 ATTAAAGGTTTATA1- G1401A G2081A C8782T C17747T A17858G C18060T C21997T T27292C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463697 MT642228
 2020-05-07 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1207/2020
 ATTAAAGGTTTATA1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463698 MT642345
 2020-05-07 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1208/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463699 MT642332
 2020-05-07 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1209/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T G16496A A23403G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_463700 MT642117
 2020-05-07 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1210/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C4993T A10323G C14408T A15593G C16376T C18877T A23403G G25563T T28861C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463701 MT642140
 2020-05-07 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1211/2020
 ATTAAAGGTTTAT1- C241T G343T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463702 MT642183
 2020-05-07 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1212/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463703 MT642213
 2020-05-07 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1213/2020
 ATTAAAGGTTTATA1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T A28458T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463704 MT642325
 2020-05-07 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1214/2020
 ATTAAAGGTTTATAC1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_463705 MT642282
 2020-05-07 2020-06-10
 United States SARS-CoV-2/human/USA/WA-S1215/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_465163
 2020-05-07 2020-06-11
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_053/2020
 C241T A1163T C3037T C14408T T21787C A23403G G26828T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_465633
 2020-05-07 2020-06-11
 United Kingdom hCoV-19/England/20198006204/2020
 C241T C3037T C9996T C11074Y C14408T A23403G G28812R GGG28881AAC

EPI_ISL_465640
 2020-05-07 2020-06-11
 United Kingdom hCoV-19/England/20198121604/2020
 A1787R C2044T A2480G C2558T T7657C C9924T C14805T G26144T

EPI_ISL_466626 MT601275
 2020-05-07 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_51/2020
 C241T A1163T C3037T C3961T C14408T A18735G A23403G GGG28881AAC

EPI_ISL_467190
 2020-05-07 2020-06-12
 Spain hCoV-19/Spain/COV003722/2020
 C241T C3037T A9997T T10837C C13381G C14408T A20268G A23403G

EPI_ISL_467234
 2020-05-07 2020-06-12
 Spain hCoV-19/Spain/COV003723/2020
 C241T C3037T C14408T T16224C C19884T A20268G A23403G G29734C

EPI_ISL_468437 MT628171
 2020-05-07 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C379A C1059T C3037T T9440A C14408T A23403G G25012A G25563T T29026A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_468469 MT628197
 2020-05-07 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1523/2020
 C37Y C241T C379A C835T C1059T C3037T A7483C C14408T G15439A A21137G A23403G G25563T

EPI_ISL_468551 MT628274
 2020-05-07 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1622/2020
 ATTA1- C241T C1059T C2668T C3037T C7039T C14408T A23403G G25563T

EPI_ISL_468552 MT628275
 2020-05-07 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1623/2020
 AT1- C241T C1059T C2668T C3037T C7039T C14408T A23403G G25563T

EPI_ISL_468553 MT628276
 2020-05-07 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1624/2020
 AT1- C241T C3037T C8327T C14408T A23403G A24862G T26102C C29545T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_469058
 2020-05-07 2020-06-17
 Sweden hCoV-19/Sweden/20-14377/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_469291
 2020-05-07 2020-06-18
 Japan hCoV-19/Japan/Donner33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T T3136C C6336T C14074A C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_469292
 2020-05-07 2020-06-18
 Japan hCoV-19/Japan/Donner34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3136C C6336T C13170T C14074A C14408T A23403G G25650T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469479
 2020-05-07 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C4C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469497
 2020-05-07 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469524
 2020-05-07 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_471171
 2020-05-07 2020-06-19
 Gambia hCoV-19/Gambia/1277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_472606
 2020-05-07 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15CCC4/2020
 ATTA1- C241T C3037T G10097A G11083T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_473369
 2020-05-07 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FA8C/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29364T TACGATCGAGTGTACAGTGAACAATGC29748-

EPI_ISL_473772
 2020-05-07 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T C23188T A23403G G27626C GGG28881AAC G29711T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_473797
 2020-05-07 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4584/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G

EPI_ISL_474140
 2020-05-07 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1641BB/2020
 ATTA1- C241T GTCATGTTA510- C3037T T4630C C14408T C14741T C22997T A23403G T24923C G25459T

EPI_ISL_474159
 2020-05-07 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164300/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475244
 2020-05-07 2020-06-23
 United Kingdom hCoV-19/England/PORT-2CFEB6/2020
 C241T C3037T C3373A C3923A A9235G C11195T C12919T C14408T C18252T A23403G GGG28881AAC

EPI_ISL_475367
 2020-05-07 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C2969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3722G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475375
 2020-05-07 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C3F1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475936
 2020-05-07 2020-06-25
 Austria hCoV-19/Austria/CeMM0639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476561
 2020-05-07 2020-06-25
 Argentina hCoV-19/Argentina/Heritas_HG006/2020
 C241T C3037T C14408T A16076C A23403G G26416T T27299C GGG28881AAC T29148C

EPI_ISL_477005
 2020-05-07 2020-06-27
 Belgium hCoV-19/Belgium/rega-0507488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1125A C3037T A13947T C14408T T21976C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477249
 2020-05-07 2020-06-29
 India hCoV-19/India/InStem_NCBS_0049/2020
 A1T T3C A5G G7C T10G ATA12GCT C16T -18CCGATC C241T C3037T C3634T A3742G C5055T C8499T C14408T C15324T G16945A G20709T A23403G C23635T A29878C A29888G

EPI_ISL_477250
 2020-05-07 2020-06-29
 India hCoV-19/India/InStem_NCBS_0050/2020
 AT1GGAG AA4TC GTT8ACG A12G A14G CT16TC C19T -22GATCT C241T C3037T C3634T A3742G C5055T C14408T C15324T G16945A G20709T A23403G C23635T A29880C

EPI_ISL_478165
 2020-05-07 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16580T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478166
 2020-05-07 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15439A A23370G A23403G G25429T G25687T C28737T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478167
 2020-05-07 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478168
 2020-05-07 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8032G C8730T C14408T C18788T T19839C G20378T A23403G A24862G ATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTCAAGAACTTTACTCTCCAATT27579- G28812T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478607
 2020-05-07 2020-06-30
 United Kingdom hCoV-19/England/NORT-292001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A513G C3037T G8042A G10097A C14408T A15580G C16616T A23403G C25714T T28250G A28254- G28436T GGG28881AAC

EPI_ISL_479519
 2020-05-07 2020-06-30
 India hCoV-19/India/NIV-22552/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479520
 2020-05-07 2020-06-30
 India hCoV-19/India/NIV-22876/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C829T A6081G C6312A C13730T C23929T C28311T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479521
 2020-05-07 2020-06-30
 India hCoV-19/India/NIV-23098/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T C19011T A23403G C23643T GGG28881AAC C29541T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480274
 2020-05-07 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV187/2020
 C241T C2113T C3037T C7765T C14408T T17520C C17690T C18877T A23403G G25563T A28877T

EPI_ISL_480275
 2020-05-07 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV188/2020
 C241T C3037T C12809T C14408T C14425T C16887T A23403G C26858T GGG28881AAC A29735G

EPI_ISL_480278
 2020-05-07 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV193/2020
 C241T C913T C3037T C7765T G10631A C12781T C14408T C17690T G18534T C18877T A23403G G25563T

EPI_ISL_480279
 2020-05-07 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV195/2020
 C241T C3037T C12809T C14408T A23403G GGG28881AAC

EPI_ISL_480302
 2020-05-07 2020-07-01
 Bulgaria hCoV-19/Bulgaria/21/2020
 C241T C313T C3037T C14408T G21746A A23403G GGG28881AAC

EPI_ISL_481715
 2020-05-07 2020-07-03
 Finland hCoV-19/Finland/7May68S22/2020
 C241T C1059T C3037T C14408T A23403G G24368T C25047T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481717
 2020-05-07 2020-07-03
 Finland hCoV-19/Finland/7May75S23/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T G27165T C27879T C29762T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481718
 2020-05-07 2020-07-03
 Finland hCoV-19/Finland/7May92S23/2020
 C241T C2416T C3037T T12139C C14408T C14937T G17658T A18039G A19674G A23403G G23611A C23613T C23625T G25563T G29227T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481776
 2020-05-07 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D94D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G613A A1630C C3037T C4752T C8152T C11020T C14408T C22000T A23403G C27679T GGG28881AAC T29698G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481777
 2020-05-07 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12525T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481810
 2020-05-07 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481821
 2020-05-07 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DA59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T C26270T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481836
 2020-05-07 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D7AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481846
 2020-05-07 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T C15352Y T16446C A23403G C25528T C27641Y GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481852
 2020-05-07 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D9D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7092C G10097A C14408T C16997T A23403G C23731T G28580T C28687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481863
 2020-05-07 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D97A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C4752T C8152T C11020T C14408T C22000T A23403G C27679T GGG28881AAC T29698G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481868
 2020-05-07 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D93E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C4752T C8152T C11020T C14408T C22000T A23403G C27679T GGG28881AAC T29698G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481891
 2020-05-07 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12525T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481894
 2020-05-07 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D6BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6425G C14408T G14500T A23403G G27467T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481901
 2020-05-07 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D95C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C4752T C8152T C11020T C14408T C22000T A23403G C27679T GGG28881AAC T29698G CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481903
 2020-05-07 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DA4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T G25785T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481905
 2020-05-07 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481940
 2020-05-07 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DA1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G G23608T C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482417
 2020-05-07 2020-07-03
 United States hCoV-19/USA/OR-PROV-165/2020
 C241T A1163G C3037T T11465C C14408T A17286G A20268G A23403G C24381T T25248C C29370G

EPI_ISL_483217
 2020-05-07 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0551-IPL/2020
 C241T C2594T C3037T C4582T A5431G C11102T C14408T A17757G A20268G A23403G

EPI_ISL_484306
 2020-05-07 2020-07-08
 United Kingdom hCoV-19/England/NORT-29DA62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C664T C1059T C3037T C14408T C17463T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484307
 2020-05-07 2020-07-08
 United Kingdom hCoV-19/England/NORT-29DB32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA1602- C3037T C3792T C7056T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484309
 2020-05-07 2020-07-08
 United Kingdom hCoV-19/England/NORT-29DB8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22785T A23403G C25350T C26078T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484310
 2020-05-07 2020-07-08
 United Kingdom hCoV-19/England/NORT-29DBAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C2644T C3037T C14408T A23403G G23948T G25687T C26313T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484312
 2020-05-07 2020-07-08
 United Kingdom hCoV-19/England/NORT-29DC4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C2644T C3037T C14408T A23403G G23948T G25687T C26313T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484313
 2020-05-07 2020-07-08
 United Kingdom hCoV-19/England/NORT-29DC8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T C7926T A10323G C14408T A14671C C17550T A23403G C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484315
 2020-05-07 2020-07-08
 United Kingdom hCoV-19/England/NORT-29DD3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G701A C2508T C3037T A14194G C14408T A20268G A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484316
 2020-05-07 2020-07-08
 United Kingdom hCoV-19/England/NORT-29DD4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1559T C3037T T13899C C14408T A20268G C21707T A23403G C26256T C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486244 MT750427
 2020-05-07 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T AAGTCATTT686- C3037T G6532T C14408T C18395T G18898T C21772T T23047W A23122R A23403G T25902W T25908W G25913S G26730T G28739T GGG28881AAC

EPI_ISL_486247 MT750429
 2020-05-07 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1978/2020
 ATTAAAGGTTTATACCT1- C241T C320S C3037T G6532T C14408T C18395T G18898T C21772T A23122R A23403G T25902W T25908W G25913S GGGG28881AACK

EPI_ISL_486251 MT750432
 2020-05-07 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T GTCATGTTA510- C3037T C14408T G21255C A23403G T25902W T25908W G25913S GGG28881AAC G28960T T29867M

EPI_ISL_486334 MT750490
 2020-05-07 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C3037T T7132C C8327T C9112T C14408T A23122V A23403G C24442T A24862G G25429T T25902W T25908W G25913S

EPI_ISL_486411
 2020-05-07 2020-07-10
 Latvia hCoV-19/Latvia/028/2020
 C241T C1912A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_486414
 2020-05-07 2020-07-10
 Latvia hCoV-19/Latvia/031/2020
 C241T C3037T C7765T A10291G C14408T G18412T T19839C C21575T A23403G GGGG28881AACT

EPI_ISL_487667
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C12915T C14120T C14408T A20268G A23403G G27987T C28775T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487795
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T G28541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487868
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T C10582T C14408T A23403G AG25562GT C28310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487989
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488076
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/England/NORT-29D9DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488084
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/England/NORT-29DC7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C2644T C3037T C14408T A23403G G23948T G25687T C26313T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488131
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/England/NORT-29D9A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12073T C14408T G16943K A23403G G27214A G27750T G28514C G28628T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488173
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/England/NORT-29DB23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C9474T G10097A C13536T C14408T G23282T A23403G C23731T TTTTAAAGTTTCCATTTGGAATCTTGA27264- T28238C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489065
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/England/NORT-291FF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4755T G10097A C14408T A23403G C23731T C26333T G26393T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489074
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/England/NORT-2921E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G7873T G10097A C13536T C14408T A23403G C23731T G27281K GGG28881AAC A29735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489103
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/England/NORT-2921FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489106
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/England/NORT-2921D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489116
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/England/NORT-2920F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TGGTTG519- C3037T C6388T G10097A A11126G C14408T A23403G C23731T G24933T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489135
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/England/NORT-29203E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8042A G10097A G10642T C14408T C16616T A23403G C23731T C25714T G28580T GGG28881AAC G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489139
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/England/NORT-2921C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T G22051T G23009T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489149
 2020-05-07 2020-07-14
 United Kingdom hCoV-19/England/NORT-292177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A16534G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490598
 2020-05-07 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C59A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C207T C241T C3037T C5585A G10097A C11750T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490614
 2020-05-07 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C8F16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C G10097A C14408T T19350C T19353G A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491141
 2020-05-07 2020-07-16
 Oman hCoV-19/Oman/C-15758/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2091T C3037T G10265A C14408T C16293T C18395T A23403G G25244T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_492895
 2020-05-07 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C12A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5115Y C14408T A20412G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492910
 2020-05-07 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C10A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T A23403G GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492913
 2020-05-07 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C1343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5115Y C14408T A20412G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493331
 2020-05-07 2020-07-21
 Italy hCoV-19/Italy/INMI19/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T G15906T A23403G A25448C GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_493907
 2020-05-07 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T G13397A C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493908
 2020-05-07 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493909
 2020-05-07 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494503
 2020-05-07 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1343/2020
 C241T C3037T C11289T C14408T G19735T A20268G G21786T A23403G C28087T C28854T

EPI_ISL_494579
 2020-05-07 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G10759T C14408T A20268G A23403G C28854T

EPI_ISL_494580
 2020-05-07 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_494581
 2020-05-07 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1887T C3037T C14408T A23403G G25563T

EPI_ISL_495437
 2020-05-07 2020-07-22
 Turkey hCoV-19/Turkey/KU-027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G210T C241T G2086T C3037T C7765T C8326T C14408T C16428T C17690T C18877T A23403G G25563T G28857T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_495457
 2020-05-07 2020-07-22
 Turkey hCoV-19/Turkey/KU-047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C7765T C8326T C14408T C16428T C17690T C18877T A23403G G25563T G28857T TCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29753-

EPI_ISL_495644 MT821788
 2020-05-07 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1469/2020
 ATTAAAGGTTT1- C241T C3037T A5538T C10733T C14408T G16813A A16872C A23403G T25783C A27914T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495646 MT821792
 2020-05-07 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1471/2020
 ATTAAA1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495647 MT821791
 2020-05-07 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1472/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495717 MT821617
 2020-05-07 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1267/2020
 ATTAAAGGTTTAT1- C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496536
 2020-05-07 2020-07-24
 India hCoV-19/India/NCCS_NR567/2020
 ATTAAAGGT1- A29- C241T C3037T C14408T A23403G

EPI_ISL_499453
 2020-05-07 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169514/2020
 ATTAAAGGT1- C241T C3037T T5573C C6380T G11801A C14408T T18768C T19839C A23403G G24586T G25552T GGG28881AAC G28979T T29607C AAAAAAAAAAAAAAAAA29887-

EPI_ISL_499456
 2020-05-07 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16956F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2749T C3037T C6026T G11801A C14408T T19839C A23403G G25552T AG28877TC GGG28881AAC C29555T

EPI_ISL_507189
 2020-05-07 2020-08-03
 United Kingdom hCoV-19/Scotland/EDB6697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2306T C3037T C10798A C13862T C14408T A23403G G23587C C28836T CCACGCGGAGTACGATCGAGTGT29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507190
 2020-05-07 2020-08-03
 United Kingdom hCoV-19/Scotland/EDB6699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2306T C3037T C10798A C13862T C14408T A23403G C28836T CCACGCGGAGTACGATCGAGTGT29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507213
 2020-05-07 2020-08-03
 Russia hCoV-19/Russia/Novosibirsk-RII27320S/2020
 ATTAA1- C241T C1059T C3037T A8887G C14408T T18231C A20755C A23403G G25563T C28651T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507214
 2020-05-07 2020-08-03
 Russia hCoV-19/Russia/Novosibirsk-RII27321S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507215
 2020-05-07 2020-08-03
 Russia hCoV-19/Russia/Novosibirsk-RII27322S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T22020C A23403G C25810T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_508026
 2020-05-07 2020-08-03
 United States hCoV-19/USA/NM-UNM-00335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T C14408T C18877T G21974T A23403G G25563T G25618A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508382
 2020-05-07 2020-08-04
 India hCoV-19/India/IK56/2020
 T3G G1820A A3428C C7945T C8782T C11344T G12514T C17143T G22468T T28144C G28878A G29474T G29742A G29868A

EPI_ISL_508383
 2020-05-07 2020-08-04
 India hCoV-19/India/IK57/2020
 G94T C241T T979C C3037T T12388C C14408T C18508T A23403G G29868A

EPI_ISL_508384
 2020-05-07 2020-08-04
 India hCoV-19/India/IK58/2020
 C241T C3037T C14408T C22550T A23403G C27493T G29868A

EPI_ISL_508386
 2020-05-07 2020-08-04
 India hCoV-19/India/IK60/2020
 ATT1- C1572T C7945T C8782T G22468T C25571T G26211T C26455T G28077T T28144C G28878A G29742A G29868A

EPI_ISL_509849 MT846533
 2020-05-07 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- T809A C1059T C3037T C12823T C14408T C15450T C16017T C16616T C17288T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509850 MT846534
 2020-05-07 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T T19839C A23403G C23707T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509851 MT846535
 2020-05-07 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T T19839C A23403G C23707T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509933 MT846620
 2020-05-07 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T T19839C A23403G C23707T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509934 MT846621
 2020-05-07 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T T19839C A23403G C23707T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509935 MT846622
 2020-05-07 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T T19839C A23403G C23707T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510554
 2020-05-07 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2216/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_510555
 2020-05-07 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2217/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_510556
 2020-05-07 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_510557
 2020-05-07 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2219/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510558
 2020-05-07 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2220/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510559
 2020-05-07 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2221/2020
 ATTAAAGGT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510560
 2020-05-07 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2222/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T T9831C C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_510561
 2020-05-07 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2223/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAA29899-

EPI_ISL_513617
 2020-05-07 2020-08-13
 Democratic Republic of the Congo hCoV-19/DRC/6395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C222T C241T G2398T C3037T G3230A C14408T G17259T C19164T A23403G T24076A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_513618
 2020-05-07 2020-08-13
 Democratic Republic of the Congo hCoV-19/DRC/6398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3230A C14408T A23403G T24076A C28720T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_513908 MW036054
 2020-05-07 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5540A C11916T C14408T C18998T C19145T A23403G G25563T G29540A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513909 MW036070
 2020-05-07 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2547/2020
 ATTA1- C241T C1059T C3037T C5540A C7518Y C9391Y C11916T C14408T C18998T C19145T A23403G G25563T G29540A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515461
 2020-05-07 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C379A C1059T C3037T G9652T C11102T CC14407TT C19185T A23403G G25563T

EPI_ISL_516692 MT913127
 2020-05-07 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0369/2020
 ATTA1- C241T C3037T C14408T A23403G C25708T GGG28881AAC

EPI_ISL_516693 MT913128
 2020-05-07 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0370/2020
 ATTAAAGGTT1- C241T C3037T C14408T A23403G C25708T GGG28881AAC

EPI_ISL_517616
 2020-05-07 2020-08-24
 Suriname hCoV-19/Suriname/SR-05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C15324T C16193T C18060T A22404T C22450T A23403G G24893C C28253T C28311T AGTGTAC29756- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517941 MT966129
 2020-05-07 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1051/2020
 ATTAAAGG1- T205G C241T C1059T A2948G C3037T T8187G C14408T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_522442
 2020-05-07 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C10702T C14408T T21015C G22205T A23403G G25563T G25621T G27621A

EPI_ISL_523181
 2020-05-07 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T G26842A G28922T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523307
 2020-05-07 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T C14408T A23403G A24862G A27674T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523308
 2020-05-07 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C539T G1397A G11083T C12789T G16141T C23525T G27754T T28688C G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523439
 2020-05-07 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12747T C14408T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523547
 2020-05-07 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T G1397A C9474T G11083T C20235A T20787C T22042C T28688C T28835C C29738T G29742T C29774T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524321
 2020-05-07 2020-08-27
 United States hCoV-19/USA/UT-08564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524337
 2020-05-07 2020-08-27
 United States hCoV-19/USA/UT-08586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524392
 2020-05-07 2020-08-28
 United States hCoV-19/USA/UT-08666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T G4300T G5739A G6759T C8139T C14408T A23403G G25563T A25864G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526484
 2020-05-07 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB4568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526547
 2020-05-07 2020-09-01
 United Kingdom hCoV-19/England/20198250304/2020
 ATTA1- C241T C1469T C3037T C7528T T7976C C8092T G10870T C14408T A23403G C26801Y G28809A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_526783
 2020-05-07 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A38W C241T C3037T T4389G C13115T C14408T C18877T G22770A A23403G G25459T G25555T G25563T G28086T

EPI_ISL_526785
 2020-05-07 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0477/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_528749
 2020-05-07 2020-09-09
 Indonesia hCoV-19/Indonesia/JB-TFRIC19-R4975/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C14408T G22203T A23403G G25563T C29708T AAAAAAAAAA29894-

EPI_ISL_530089
 2020-05-07 2020-09-10
 Spain hCoV-19/Spain/MD-LP93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472A C11109T C14408T C15279T A20268G C20703T A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534321
 2020-05-07 2020-09-13
 Brazil hCoV-19/Brazil/SP-329/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G A24005C G25088T GGG28881AAC A29850T G29853A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_534776
 2020-05-07 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2850/2020
 C241T G3025T C3037T G10097A C10525T C14408T C19862T C21575T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_535341 MT997762
 2020-05-07 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1905/2020
 C241T C1059T G2447T C3037T A8449G C10319T G13771A C14408T A23403G G25563T C27964T C29762T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535342 MT997763
 2020-05-07 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1915/2020
 C117T C241T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535343 MT997985
 2020-05-07 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1916/2020
 C241T C560T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535344 MT997764
 2020-05-07 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1918/2020
 C241T C1059T C1758T G2447T C2736Y C3037T C6638T C7431Y C7926Y T8008Y C10319T C13130Y C14408T G14923A C20629T T20764Y A23403G C24421T G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535345 MT997765
 2020-05-07 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1932/2020
 C241T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_541764
 2020-05-07 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286F1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21101K A23403G GGG28881AAC G29557T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542827
 2020-05-07 2020-09-23
 United States hCoV-19/USA/TX-HMH-1769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5770T C8140T G10096A C14408T C18377T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542828
 2020-05-07 2020-09-23
 United States hCoV-19/USA/TX-HMH-1770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C22444T G23224T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542885
 2020-05-07 2020-09-23
 United States hCoV-19/USA/TX-HMH-1865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15243T A23403G G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542892
 2020-05-07 2020-09-23
 United States hCoV-19/USA/TX-HMH-1889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6451C C14408T T18231C A23403G G24834T G26230T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545079
 2020-05-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-2040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12781T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545224
 2020-05-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-2285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C22444T G23224T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549247 MW040675
 2020-05-07 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1465/2020
 ATTAAAG1- C241T C3037T C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_559665
 2020-05-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-487F79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559688
 2020-05-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-4882BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9220A A10948G C11575T C12534Y C14408T A22124C A23403G C27542T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568976
 2020-05-07 2020-10-02
 France hCoV-19/France/IHU-0814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T G9479T C14408T C15324T A23403G TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT607254
 2020-05-07 2020-06-13
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_053/2020
 C241T A1163T C3037T C14408T T21787C A23403G G26828T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

MT810487
 2020-05-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1390-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G10759T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810488
 2020-05-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1391-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810489
 2020-05-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1393-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1887T C3037T C14408T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810731
 2020-05-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1343-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C11289T C14408T G19735T A20268G G21786T A23403G C28087T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811233
 2020-05-07 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0551-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2594T C3037T C4582T A5431G C11102T C14408T A17757G A20268G A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873050
 2020-05-07 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01491/2020
 C241T C3037T C3885T G9856A C14408T C23086T A23403G C23854T C25714T C25916T T27299C GGG28881AAC T29148C C29769T

MT873098
 2020-05-07 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01502/2020
 C241T C2416T C3037T G8236T C14408T T20466C A23403G G25563T

MT873115
 2020-05-07 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01501/2020
 G105T C241T C3037T C11758T C14408T C18877T T19590C A23403G G25563T G25894A

MT873131
 2020-05-07 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01415/2020
 C241T C3037T G3663T C7390T G10642T C14408T T23030G A23403G C28603T G28899T

MT873140
 2020-05-07 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01522/2020
 C241T C1059T C3037T T9429C C11916T C14408T C18998T G19525T A20553G G21724C A23403G G25563T G29540A

MT873175
 2020-05-07 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01469/2020
 C241T C1059T C3037T C14408T A23403G G25563T ACGATCG29749-

MT873319
 2020-05-07 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01494/2020
 C241T C3037T C14408T A23403G C28603T G28899T

MT873350
 2020-05-07 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01495/2020
 C241T T833C C1059T C3037T C3117T T10654C C14408T C16616T A23403G G25563T C27964T

MT873391
 2020-05-07 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01504/2020
 G105T C241T C643T C3037T C5144T C11758T C14408T C18877T A23403G G25563T

EPI_ISL_448078
 2020-05-08 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AED48/2020
 C241T G1820A C3037T C14408T A23403G G28514T G29810A

EPI_ISL_448080
 2020-05-08 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AF55E/2020
 C241T C3037T C14408T A23403G C25350T C28866T

EPI_ISL_448088
 2020-05-08 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AF64C/2020
 C241T C3037T G8612T C14408T A23403G GGG28881AAC G29705T

EPI_ISL_448100
 2020-05-08 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1B003B/2020
 C241T A1620G C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC

EPI_ISL_448103
 2020-05-08 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1B0068/2020
 C241T C3037T G8612T C14408T G22436T A23403G GGG28881AAC G29705T

EPI_ISL_449315
 2020-05-08 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4654/2020
 C241T C1377T C3037T C14408T C16289T A19720G A23403G G25429T G28077T

EPI_ISL_449316
 2020-05-08 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4656/2020
 C241T C1377T C3037T C14408T C16289T G17533A A23403G G25429T G28077T

EPI_ISL_449318
 2020-05-08 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4661/2020
 C241T C3037T C14408T A20268G A23403G GG26466TC C28854T

EPI_ISL_449319
 2020-05-08 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4671/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_449320
 2020-05-08 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4679/2020
 C241T C3037T C14408T C18788T T19839C A23403G A24862G GGG28881AAC

EPI_ISL_450190
 2020-05-08 2020-05-20
 United States hCoV-19/USA/CA-SR0341/2020
 C241T C3037T G5555A A12124T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_450342
 2020-05-08 2020-05-20
 Bangladesh hCoV-19/Bangladesh/BARJ_CVASU_CTG_506/2020
 -A3TTCAAAGATCAAGTCAT T13C C280T C8782T A10329G G10870T C12119T C15324T G19414A G22468T T28144C G28878A G29742A C29870G AAAA29872TCGG A29878T A29880G AAAAAAA29882GTCGTGT AAA29890GGG A29896G A29898G A29900G AA29902-

EPI_ISL_450746
 2020-05-08 2020-05-22
 Poland hCoV-19/Poland/Pom2/2020
 CG241TT C1263T C3037T C4002T A6693G C8386T C8917T G10097A C13536T C14408T G22346T A23403G C23731T G26828T GGG28881AAC

EPI_ISL_451237
 2020-05-08 2020-05-24
 United States hCoV-19/USA/LA-EVTL076/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T C29203T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451238
 2020-05-08 2020-05-24
 United States hCoV-19/USA/LA-EVTL077/2020
 C241T C1059T C3037T C14408T A23403G G25563T C27964T C29203T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451242
 2020-05-08 2020-05-24
 United States hCoV-19/USA/LA-EVTL081/2020
 C241T C1059T C3037T C10188T C14408T A23403G T24982C C25276A G25563T C27964T C29218T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451249
 2020-05-08 2020-05-24
 United States hCoV-19/USA/LA-EVTL088/2020
 C241T C1059T C3037T G12079A C14408T A23403G G24257T G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451259
 2020-05-08 2020-05-24
 United States hCoV-19/USA/LA-EVTL098/2020
 C241T C1059T C3037T C14408T C21637T C22550T A23403G G25563T C27964T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451273
 2020-05-08 2020-05-24
 United States hCoV-19/USA/LA-EVTL112/2020
 C241T C1059T C3037T C14408T A18616G C22550T A23403G G25563T C27964T C29686G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_452794
 2020-05-08 2020-05-27
 India hCoV-19/India/NIHSAD-0905-216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4182T G6884R A7003G C7392T C14408T A23403G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_452912
 2020-05-08 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B06FD/2020
 C241T C3037T C14408T A23403G T24313C G28086T GGG28881AAC

EPI_ISL_455568
 2020-05-08 2020-05-31
 United States hCoV-19/USA/IA-GMF-02699/2020
 C241T A739G C1059T C2933T C3037T C8950T C9866T C12400T C14408T A14747G A20755C A22814G A23403G G25563T

EPI_ISL_455962
 2020-05-08 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10174/2020
 C241T C3037T C5175T T11638C C14408T A23403G GGG28881AAC C29708T G29736T

EPI_ISL_456809
 2020-05-08 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A20137G A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_457319
 2020-05-08 2020-06-02
 United Kingdom hCoV-19/England/NORT-292238/2020
 C241T C3037T C4755T G10097A C14408T A23403G C23731T C26333T G28580T GGG28881AAC

EPI_ISL_457356 LR814247
 2020-05-08 2020-06-02
 United Kingdom NORW-EAB56
 C241T C3037T G5411T G6669T C9430T C14408T C19017T G22992A A23403G C26270T C27630T C27641T GGG28881AAC

EPI_ISL_457456 LR814270
 2020-05-08 2020-06-02
 United Kingdom NORW-EB91F
 ATTA1- C241T C1684T C2940T C3037T C14408T A23403G

EPI_ISL_457458 LR821964
 2020-05-08 2020-06-02
 United Kingdom NORW-EB94C
 ATTAAAGGTTT1- ATG1605- C4084T G8371T C9072T G21600A C23802A

EPI_ISL_457463 LR814123
 2020-05-08 2020-06-02
 United Kingdom NORW-EB9B5
 ATTA1- C241T C3037T C14408T A23403G C25728T A27076G GGG28881AAC

EPI_ISL_457492 LR814154
 2020-05-08 2020-06-02
 United Kingdom NORW-EBC34
 ATTAAAGG1- C241T C3037T C14408T A23403G A23570T G26062T GGG28881AAC

EPI_ISL_457500 LR814271
 2020-05-08 2020-06-02
 United Kingdom NORW-EBCF8
 ATTAAAGGTTTATACCT1- C241T C1713A C2940T C3037T C9474T C14408T A23403G

EPI_ISL_457501 LR814155
 2020-05-08 2020-06-02
 United Kingdom NORW-EBD04
 ATTAAAGGT1- C241T C3037T C13862T C14408T T19330C A23403G C28836T

EPI_ISL_457509 LR821890
 2020-05-08 2020-06-02
 United Kingdom NORW-EBDB9
 AT1- C241T C3037T C14408T A23403G G26062T TTG27701- GGG28881AAC

EPI_ISL_457511 LR814237
 2020-05-08 2020-06-02
 United Kingdom NORW-EBDE6
 A1- C241T C2940T C3037T A9238C C9924T C14408T C21648T A23403G A25564G

EPI_ISL_457518 LR821996
 2020-05-08 2020-06-02
 United Kingdom NORW-EBE89
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8367T G11375R C11455T C14408T C17304T C19524T A23403G G25302T G25455T GGG28881AAC

EPI_ISL_457540 LR821844
 2020-05-08 2020-06-02
 United Kingdom NORW-EC5FC
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1713A C2940T C3037T C14408T A23403G

EPI_ISL_457572 LR821887
 2020-05-08 2020-06-02
 United Kingdom NORW-EC969
 ATTA1- A35W C241T C3037T A9749G C14408T A23403G A24232G G25429T G27788T

EPI_ISL_457705
 2020-05-08 2020-06-02
 Oman hCoV-19/Oman/205034466/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G1944A C3037T G10265A C14408T C16293T A23403G GGG28881AAC A29865T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_459921
 2020-05-08 2020-06-05
 India hCoV-19/India/MaxCov0019_CSIR-IGIB/2020
 C1707Y C6310M C6312A G11083T G12685K C13730T A15435R C23929T T24622Y C28311T GGG28881RRS

EPI_ISL_459923
 2020-05-08 2020-06-05
 India hCoV-19/India/MaxCov0021_CSIR-IGIB/2020
 C1707Y C6310M C6312A C6896M G11083T G12685K C13730T T19369Y G21423K C21541M C23929T T24622Y C28311T

EPI_ISL_459924
 2020-05-08 2020-06-05
 India hCoV-19/India/MaxCov0022_CSIR-IGIB/2020
 C241Y C313Y C3037Y G3638R C3768Y C6310M C6312M G11083K C13730Y C19983T A23403R C23929Y T24622Y C28311Y GGG28881AAC

EPI_ISL_460557
 2020-05-08 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20509/2020
 C241T C1059T C2910T C3037T C14408T C19660T A23403G G25563T A28097R G28882T

EPI_ISL_460951
 2020-05-08 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C21811T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460999
 2020-05-08 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T19209C A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461000
 2020-05-08 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C17010T T19209C A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461087
 2020-05-08 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C C934T ATG1605- C17410T A21706G C27002T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461385
 2020-05-08 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461387
 2020-05-08 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C10029T C11109T C12415T C14408T G17790T T19159G A23403G C25006T G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461989
 2020-05-08 2020-06-06
 United Kingdom hCoV-19/England/PORT-2CFD13/2020
 C241T C3037T C6968T C14408T A23403G GGG28881AAC

EPI_ISL_461991
 2020-05-08 2020-06-06
 United Kingdom hCoV-19/England/PORT-2CFD40/2020
 C241T C2142T C3037T C14408T C19170T G19509A G21606T T22197C A23403G GGG28881AAC C28905T

EPI_ISL_462886
 2020-05-08 2020-06-08
 United States hCoV-19/USA/MN-MDH-1041/2020
 A1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_463114 MT609577
 2020-05-08 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0347/2020
 ATTAAAGGTT1- C241T C2416T C3037T G4523A G9601T C10712T C14408T A23403G G25563T

EPI_ISL_463115 MT609578
 2020-05-08 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T G4523A G9601T C10712T C11941A C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_463116 MT609579
 2020-05-08 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0349/2020
 ATTA1- C241T C2416T C3037T G4523A G9601T C10712T A11914G C11941A C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_463117 MT609580
 2020-05-08 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0350/2020
 ATTAAAGGTTT1- C241T C2416T C3037T G4523A G9601T C10712T G11230T C14408T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_463118 MT609581
 2020-05-08 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0351/2020
 AT1- C241T C2416T C3037T G4523A G9601T C10712T C14408T A23403G G25563T

EPI_ISL_463119 MT609582
 2020-05-08 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0352/2020
 ATT1- C241T C2416T C3037T G4523A G9601T C10712T C14408T A23403G G25563T

EPI_ISL_463120 MT609583
 2020-05-08 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0353/2020
 C241T C2416T C3037T G4523A G9601T C10712T C11941A C14408T A23403G G25563T G29862C

EPI_ISL_463127 MT609590
 2020-05-08 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T A23403G C25708T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_463128 MT609591
 2020-05-08 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0372/2020
 ATT1- C241T C3037T C14408T A23403G C25708T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_463129 MT609592
 2020-05-08 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0373/2020
 ATTA1- C241T C3037T C14408T A23403G C25708T GGG28881AAC

EPI_ISL_467379
 2020-05-08 2020-06-13
 United States hCoV-19/USA/NY-NYUMC886/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_467405
 2020-05-08 2020-06-13
 United States hCoV-19/USA/NY-NYUMC912/2020
 C241T C1059T C3037T C11665T C14408T T20028C A23403G C24863T G25563T A28359G G29825T

EPI_ISL_468468 MT628196
 2020-05-08 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1522/2020
 C241T C3037T C7644T G8174R C14408T C18877T A23403G G25563T

EPI_ISL_469346
 2020-05-08 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BE8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T G11221T C14408T C19170T G19509A T23221G A23403G A26440C G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469385
 2020-05-08 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BE22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T C17762Y G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469402
 2020-05-08 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BE5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C988T C3037T C7600T G8287T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469427
 2020-05-08 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BDBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6732C G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469428
 2020-05-08 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BF6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6308C G12202T C14408T T19839C G20730T A23403G C26681T C27577T GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469463
 2020-05-08 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BDCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469811
 2020-05-08 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T A13707G C14408T C20233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471873
 2020-05-08 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20852/2020
 C241T C1059T T1941G C3037T T8899C C14408T C23191T A23403G G25563T AAAAA29899-

EPI_ISL_471876
 2020-05-08 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20855/2020
 C241T C1059T T1703C C3037T A5011M C14267T C14408T C16329T A23403G G25563T G27147K C28893T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_471888
 2020-05-08 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20867/2020
 C241T C1059T T1941G C3037T C5497Y T8899C C14408T A23403G G25563T G26949K AAAAAAAA29896-

EPI_ISL_473327
 2020-05-08 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F776/2020
 C241T C3037T A6889G C14408T A23403G G25409T GGG28881AAC C29364T TACGATCGAGTGTACAGTGAACAATGC29748-

EPI_ISL_474006
 2020-05-08 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16386C/2020
 ATTA1- C241T C2232T C3037T C14408T C14877T C19185T A23403G A23899C C24034T C27791T T28382C GGG28881AAC

EPI_ISL_474081
 2020-05-08 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163DA9/2020
 ATTA1- C241T G2659T C3037T T4330C G6352T C10332T C14408T C18928T A23403G T25556G G26784A GGG28881AAC

EPI_ISL_474099
 2020-05-08 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163ED3/2020
 C241T C2749T A2818C C3037T C6026T C10369T G11801A C14408T T19839C A23403G G25552T AG28877TC GGG28881AAC C29555T

EPI_ISL_474115
 2020-05-08 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164009/2020
 C241T G942A C3037T C6026T G11801A C14408T T19839C A23403G G25552T AG28877TC GGG28881AAC

EPI_ISL_474157
 2020-05-08 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1642E5/2020
 ATTA1- C222T C241T C3037T C8964T C13274T C14097T C14408T C21780T A23403G GGG28881AAC

EPI_ISL_474198
 2020-05-08 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1645A0/2020
 C241T G2659T C3037T T4330C G6352T C10332T C14408T C18928T A23403G T25556G G26784A GGG28881AAC

EPI_ISL_475476
 2020-05-08 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CF270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18803T C20719T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475542
 2020-05-08 2020-06-23
 Sweden hCoV-19/Sweden/20-51337/2020
 C241T C3037T C14408T A22495G A23403G G23856T G28048T G28080A GGG28881AAC

EPI_ISL_478171
 2020-05-08 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478173
 2020-05-08 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478174
 2020-05-08 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478176
 2020-05-08 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478177
 2020-05-08 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478178
 2020-05-08 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2883A C3037T C3619T C14408T A20268G A23403G C26873T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478179
 2020-05-08 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478182
 2020-05-08 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4269G C14408T A20268G A23403G GG26466TC C28854T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478183
 2020-05-08 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4269G C10252T C14408T A20268G A23403G GG26466TC C28854T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478184
 2020-05-08 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A23403G A23572T A24862G C25571T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478199
 2020-05-08 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C12915T C14120T C14408T A20268G A23403G G27987T C28775T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478662
 2020-05-08 2020-06-30
 United Kingdom hCoV-19/England/NORT-295D52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2854G C3037T A3069G A3133G G5716T C8772T A14083G C14408T A23403G G26372T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479522
 2020-05-08 2020-06-30
 India hCoV-19/India/NIV-23721/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C9166T C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479523
 2020-05-08 2020-06-30
 India hCoV-19/India/NIV-24174/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T A23403G A25235T GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480927 MT704094
 2020-05-08 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0276/2020
 ATTAAAGGTTT1- C241T C1059T C3037T A8315G C10188T C12534T C14408T G22484T A23403G T24982C G25563T T26978A C27046T C27964T G28321T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480928 MT704095
 2020-05-08 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0277/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C1917T C3037T C14408T C18060T A23403G G25563T C28453T C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481719
 2020-05-08 2020-07-03
 Finland hCoV-19/Finland/8May11S7/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C27879T C29762T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481720
 2020-05-08 2020-07-03
 Finland hCoV-19/Finland/8May18S18/2020
 C241T C2416T C3037T G11842A C14408T C14937T G17658T G18186T A19674G G19816T A23403G G23611A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481721
 2020-05-08 2020-07-03
 Finland hCoV-19/Finland/8May21S18/2020
 C241T C1059T C3037T C10078T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481722
 2020-05-08 2020-07-03
 Finland hCoV-19/Finland/8May24S14/2020
 C241T C3037T C6401T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481723
 2020-05-08 2020-07-03
 Finland hCoV-19/Finland/8May30S7/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T G27165T C27879T C29762T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481724
 2020-05-08 2020-07-03
 Finland hCoV-19/Finland/8May35S7/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T G27165T C27879T C29762T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481725
 2020-05-08 2020-07-03
 Finland hCoV-19/Finland/8May38S18/2020
 C241T C2416T C3037T G4960T C14408T C14937T G19827A A23403G G23611A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481726
 2020-05-08 2020-07-03
 Finland hCoV-19/Finland/8May43S7/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25552T G25563T G27165T C27879T C29762T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481727
 2020-05-08 2020-07-03
 Finland hCoV-19/Finland/8May65S11/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C27879T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481728
 2020-05-08 2020-07-03
 Finland hCoV-19/Finland/8May70S18/2020
 C241T C1059T C3037T C10078T C14408T C20775A G22899T A23254G A23403G G24368T G25563T GGCCACGCGGAGTACGATCGAGTG29736- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481729
 2020-05-08 2020-07-03
 Finland hCoV-19/Finland/8May89S14/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481787
 2020-05-08 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D6CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481850
 2020-05-08 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481930
 2020-05-08 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12D682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482072
 2020-05-08 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599FC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_482074
 2020-05-08 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599FAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5053R G5425T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482086
 2020-05-08 2020-07-03
 United Kingdom hCoV-19/England/HECH-259A000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C3397T T11526C C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482106
 2020-05-08 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599FE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482418
 2020-05-08 2020-07-03
 United States hCoV-19/USA/OR-PROV-167/2020
 C241T C3037T C14408T A20268G G21793T A23403G C25047T C29370G

EPI_ISL_482419
 2020-05-08 2020-07-03
 United States hCoV-19/USA/OR-PROV-168/2020
 A2550G G11083T C14805T G26144T

EPI_ISL_482420
 2020-05-08 2020-07-03
 United States hCoV-19/USA/OR-PROV-169/2020
 C241T A2161G C3037T C14408T C16376T G17562T C18877T A23403G G25563T

EPI_ISL_482441
 2020-05-08 2020-07-03
 United States hCoV-19/USA/OR-PROV-199/2020
 C241T T568A C3037T C14408T G20980A A23403G

EPI_ISL_482442
 2020-05-08 2020-07-03
 United States hCoV-19/USA/OR-PROV-200/2020
 C241T C1059T C3037T C11916T C14408T A23403G C25466T G25563T G28027T G29742T

EPI_ISL_482443
 2020-05-08 2020-07-03
 United States hCoV-19/USA/OR-PROV-201/2020
 C241T C1059T C3037T C14408T C18086T A23403G G25563T A26528T A28492T

EPI_ISL_482773
 2020-05-08 2020-07-06
 Egypt hCoV-19/Egypt/MASRI-027/2020
 C241T C2706T C3037T C3373A C14408T C21575T A23403G GGG28881AAC

EPI_ISL_482946
 2020-05-08 2020-07-06
 United States hCoV-19/USA/MN-MDH-1225/2020
 ATTAAAGGTTTATACC1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_484300
 2020-05-08 2020-07-08
 United Kingdom hCoV-19/England/NORT-29D6B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486276 MT750451
 2020-05-08 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2024/2020
 ATTAAAGGTTTA1- C241T C379A C1059T C3037T C14408T C22224T A23403G C23634T G25563T

EPI_ISL_486278 MT750452
 2020-05-08 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2030/2020
 ATTAAAGGTTTATACCT1- C222T C241T C320S C1059T G1681T A2165G C3037T C6445T C14408T A22904M A23122R A23403G T24835C G25563T T25902W T25908W G25913S G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486417
 2020-05-08 2020-07-10
 Latvia hCoV-19/Latvia/034/2020
 G210T C241T C3037T C14036A C14408T A23403G GGG28881AAC

EPI_ISL_487107
 2020-05-08 2020-07-13
 Nigeria hCoV-19/Nigeria/KW298-CV48/2020
 ATTAA1- A361G C8782T C11962T G22468T T28144C G28878A C29614T G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_487682
 2020-05-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487783
 2020-05-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G18213T A18818G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487861
 2020-05-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C19803T A23403G G24998C T25580C C28836T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487981
 2020-05-08 2020-07-14
 United Kingdom hCoV-19/Scotland/EDB6050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488104
 2020-05-08 2020-07-14
 United Kingdom hCoV-19/England/NORT-29D507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4452G C14408T C20133T A23403G G27996T GGG28881AAC G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489077
 2020-05-08 2020-07-14
 United Kingdom hCoV-19/England/NORT-292256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C12123T T13216G C14408T A22206G A23403G C23731T GGG28881AAC G29001A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489082
 2020-05-08 2020-07-14
 United Kingdom hCoV-19/England/NORT-2922FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489086
 2020-05-08 2020-07-14
 United Kingdom hCoV-19/England/NORT-292274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C2306T C3037T A14061G C14408T C21575T A23403G C28507T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489125
 2020-05-08 2020-07-14
 United Kingdom hCoV-19/England/NORT-2922ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687Y C2306Y C3037T G8042R G10097R G10642K A14061R C14408T C16616Y C21575Y A23403G C23731Y C25714Y G28580K GGG28881AAC G29179K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489199
 2020-05-08 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FE0C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5719C G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489238
 2020-05-08 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FE339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G G27708A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490061
 2020-05-08 2020-07-15
 Singapore hCoV-19/Singapore/611/2020
 C4327T C6310A C6312A A8568W T8672C G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_490063
 2020-05-08 2020-07-15
 Singapore hCoV-19/Singapore/613/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C28311T G28378T AAAAAAAAAAAA29892-

EPI_ISL_490067
 2020-05-08 2020-07-15
 Singapore hCoV-19/Singapore/617/2020
 G677A C6310A C6312A A9409G G11083T C13730T G15006T C19524T C22009T C23185T C23929T C25308A C28311T AAAAAAAAAAAA29892-

EPI_ISL_490068
 2020-05-08 2020-07-15
 Singapore hCoV-19/Singapore/618/2020
 C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T A28467T AAAAAAAAAAAA29892-

EPI_ISL_490070
 2020-05-08 2020-07-15
 Singapore hCoV-19/Singapore/620/2020
 C6310A C6312A T8672C G11083T T12748A C13730T C15720T C19524T G23611T C23929T C28311T G28985T AAAAAAAAAAAA29892-

EPI_ISL_490586
 2020-05-08 2020-07-15
 United Kingdom hCoV-19/England/SHEF-C200A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491947
 2020-05-08 2020-07-17
 Ecuador hCoV-19/Ecuador/36192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T T18660C A23403G GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_491953
 2020-05-08 2020-07-17
 Ecuador hCoV-19/Ecuador/36226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T T4839C C14408T G20464A A20621T A23403G C28320T GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_492029
 2020-05-08 2020-07-18
 Bangladesh hCoV-19/Bangladesh/CHRF_0018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C678T A1163T A2977W C3037T G4787S G6041A G10817S C14408T C16391Y C18404Y G21809K A23403G G28798K GGG28881AAC T29727G A29903-

EPI_ISL_493212 MT856685
 2020-05-08 2020-07-21
 United States SARS-CoV-2/human/USA/SC-USC-PRG00427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6696T C10319T C14408T C19170T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493426 MT856686
 2020-05-08 2020-07-21
 United States SARS-CoV-2/human/USA/SC-USC-USC00431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9763A C14408T A14736G A23403G G25563T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493707
 2020-05-08 2020-07-21
 United Kingdom hCoV-19/England/SHEF-CC53E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4060G C5585A G10097A C11750T C14408T A23403G C23731T C28232T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493910
 2020-05-08 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4269G C14408T A20268G A23403G GG26466TC C28854T G29291A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493911
 2020-05-08 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2502T C3037T C14408T A20268G A23403G G25437T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493912
 2020-05-08 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494470
 2020-05-08 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1272/2020
 C241T C3037T C14408T A20268G A23403G T24076C C28854T C29077T

EPI_ISL_494577
 2020-05-08 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T14361C C14408T A20268G A23403G C28854T

EPI_ISL_494578
 2020-05-08 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T T14361C C14408T A20268G A23403G C28854T

EPI_ISL_494587
 2020-05-08 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1411/2020
 ATTA1- C241T C3037T T14361C C14408T A20268G A23403G C28854T

EPI_ISL_495642 MT821784
 2020-05-08 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1467/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_495667 MT821723
 2020-05-08 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1217/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T G16813A C19041T A21312G A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495668 MT821632
 2020-05-08 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1218/2020
 ATTAAAGGTTT1- C241T C3037T C13297T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495671 MT821593
 2020-05-08 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1221/2020
 ATTAAAGGTTTAT1- C186T C241T C3037T C14408T C15933T G16968T T19839C G22225C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495672 MT821613
 2020-05-08 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1222/2020
 ATTAAAGGTTT1- C186T C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495673 MT821615
 2020-05-08 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1223/2020
 ATTAAAGGTTT1- C186T C241T C3037T C14408T C15933T G16968T T19839C G22225C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496587
 2020-05-08 2020-07-24
 India hCoV-19/India/NCCS_NR570/2020
 AT1- C241T C3037T C11109T C14408T C21627T A23403G

EPI_ISL_498270
 2020-05-08 2020-07-27
 China hCoV-19/Hong Kong/HKU-200723-105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T4579A C6312A G11083T C13730T C20628A C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499399
 2020-05-08 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169259/2020
 ATTAAAG1- C241T T847G T2454G C2749T C3037T C6026T G11801A C14408T T19839C A23403G G25401T G25552T C27972T AG28877TC GGG28881AAC C29555T

EPI_ISL_499806
 2020-05-08 2020-07-28
 United Kingdom hCoV-19/England/NORT-29D4FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C18131T A23403G C23731T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501157
 2020-05-08 2020-07-30
 United States hCoV-19/USA/WA-UW-8845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C3037T A12557C AGG13512TTA TA14222GC C14408T T21146A G21151T ACC23076GGH A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_507188
 2020-05-08 2020-08-03
 United Kingdom hCoV-19/Scotland/EDB6693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3672G C7728T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507991
 2020-05-08 2020-08-03
 United States hCoV-19/USA/NM-UNM-00336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T G4913T A7870G C14408T A23403G G25563T G27637T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508426
 2020-05-08 2020-08-04
 India hCoV-19/India/MW18/2020
 ATTA1- C21A C241T C313T C3037T C5700A C13458T C14408T C15810T A23403G GGG28881AAC G29868A

EPI_ISL_509121
 2020-05-08 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2550G G11083T C14805T G26144T A29903-

EPI_ISL_509122
 2020-05-08 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2973T C3037T C11916T C14408T A23403G G25563T G28027T G29742T

EPI_ISL_509124
 2020-05-08 2020-08-05
 United States hCoV-19/USA/WA-OHSU-0386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T G29648T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509443
 2020-05-08 2020-08-05
 United Kingdom hCoV-19/England/PRIN-254BD34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11653T C14408T C22286T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509945 MT846632
 2020-05-08 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6861T C14408T C19170T G19509A G20616T G21989T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509946 MT846633
 2020-05-08 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C5183T C14408T T15354C C18877T A23403G G25563T G27746T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509998
 2020-05-08 2020-08-05
 United States hCoV-19/USA/WI-UW-945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3828T C5392T C14408T A23403G G25563T TTTAGCACTCAAT27568- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510513
 2020-05-08 2020-08-06
 Spain hCoV-19/Spain/COV005478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T A12460G A12986G C14408T A20268G A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510535
 2020-05-08 2020-07-28
 Brazil hCoV-19/Brazil/PR-LRV-01/2020
 ATTAAAGGTTTATACCTTC1- CC20GA C241T C3037T C14408T A23403G T27299C GGG28881AAC C28969T T29148C -29904AAA

EPI_ISL_510552
 2020-05-08 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2214/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510553
 2020-05-08 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2215/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510563
 2020-05-08 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510564
 2020-05-08 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2226/2020
 C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_510565
 2020-05-08 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2227/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T T21854C A23403G G25563T G29179T G29779T AAAAAAAAAAA29893-

EPI_ISL_510566
 2020-05-08 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2228/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510568
 2020-05-08 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2230/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_510569
 2020-05-08 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2231/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_510570
 2020-05-08 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2232/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C26537T G29179T G29779T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_510571
 2020-05-08 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_510572
 2020-05-08 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2234/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_510579
 2020-05-08 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2241/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C9474T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_510825
 2020-05-08 2020-08-07
 Sweden hCoV-19/Sweden/20-51416/2020
 C241T C3037T C5467T G13759A C14195A C14408T A23403G C27450T

EPI_ISL_512296
 2020-05-08 2020-08-11
 Poland hCoV-19/Poland/1132916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1594T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C23855T GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_512636
 2020-05-08 2020-08-11
 Ukraine hCoV-19/Ukraine/203100357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1469T G11083T C14805T T17247C G26144T C26606T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_513174
 2020-05-08 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH647/2020
 C241T C3037T C14408T C17125T G25563T C26735T

EPI_ISL_513177
 2020-05-08 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH687/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513178
 2020-05-08 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH688/2020
 C241T C8782T G18756T G22468T A23403G G28878A T29710A G29742A

EPI_ISL_513855 MW036073
 2020-05-08 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2446/2020
 ATT1- G199K C241T C337Y C379A C1059T C3037T G6036K C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515252 MW010236
 2020-05-08 2020-08-18
 United States SARS-CoV-2/human/USA/TX-DSHS-0003/2020
 AT1- C241T C1059T C3037T C7528T C14408T A18751G A23403G G25563T C27393T G28899T C29585T

EPI_ISL_515958
 2020-05-08 2020-08-20
 India hCoV-19/India/nimh-14834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13730T C14097T C16293T A21792T C23929T C25006T C25546A G27990T C28311T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_523305
 2020-05-08 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T23860C T29726C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523306
 2020-05-08 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T23860C T29726C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523498
 2020-05-08 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11960A C14408T C18788T A23403G C24372T A24862G G25364T G28326T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523614
 2020-05-08 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446T C14408T A23403G T24214C G28812T GGG28881AAC A29763G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524000
 2020-05-08 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-12083V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T A399G G1401A C3037T C14408T C16289T A23403G C26752T G27415T C27752T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524001
 2020-05-08 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-12101V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T T1107C T3006G C3037T G3281T A3542G T13270C C14408T A23403G C25000T C25603T G26211T GGG28881AAC G29300C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524002
 2020-05-08 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-12105V/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A30G C241T C3037T C14408T T17694C A23403G G28655T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524374
 2020-05-08 2020-08-28
 United States hCoV-19/USA/UT-08636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524376
 2020-05-08 2020-08-28
 United States hCoV-19/USA/UT-08639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C1514T C3037T C6541T C11379T C14408T A22320G A23403G G25444T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524416
 2020-05-08 2020-08-28
 United States hCoV-19/USA/UT-08698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524417
 2020-05-08 2020-08-28
 United States hCoV-19/USA/UT-08699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T C20148T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524419
 2020-05-08 2020-08-28
 United States hCoV-19/USA/UT-08702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T A14613G A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524799
 2020-05-08 2020-08-28
 Brazil hCoV-19/Brazil/MA-IEC-166867/2020
 C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C

EPI_ISL_526236
 2020-05-08 2020-09-01
 Hungary hCoV-19/Hungary/MH-6603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7954T C8140T C13667T C14408T A20268G G22468T A23403G C29025T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526789
 2020-05-08 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0481/2020
 ATTA1- C241T C799T C1059T C3037T C6701T C11916T C13252T C14408T A23403G C23604T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_527401
 2020-05-08 2020-09-02
 United States hCoV-19/USA/CO-CSU-B1397/2020
 C241T C1059T C3037T T13996G C14408T A23403G G25563T G26526K AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527697
 2020-05-08 2020-09-04
 United States hCoV-19/USA/MN-CDC-6302/2020
 C241T C1059T C1812T C3037T G8264T C10319T C13665T C14408T A23403G G25563T C26645T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527698
 2020-05-08 2020-09-04
 United States hCoV-19/USA/MN-CDC-6305/2020
 C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528941
 2020-05-08 2020-09-09
 Italy hCoV-19/Italy/LOM-IZSGC-TE35432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C3037T C13620M C14408Y G20578T A23403G G28857K GGG28881AAC AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_528942
 2020-05-08 2020-09-09
 Italy hCoV-19/Italy/LOM-IZSGC-TE35441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C3037T C13446A C13620M C14408Y C21639Y A23403G G28857K GGG28881AAC AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_528946
 2020-05-08 2020-09-09
 Italy hCoV-19/Italy/LOM-IZSGC-TE35578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C3037T T7258Y C14408Y C21789Y A23403G GGG28881AAC AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_530090
 2020-05-08 2020-09-10
 Spain hCoV-19/Spain/MD-LP94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2455T T8163G C8782T T9477A C14805T G19009T TTT21980- C25521T G25979T C26681T C27807T T28144C C28657T C28863T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530195 MT997717
 2020-05-08 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1599/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C1812T C3037T C8660T C10319T C13665T C14408T A23403G G25563T C27964T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_534920
 2020-05-08 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3F4B/2020
 C241T C3037T C14408T G19072T A23403G GGG28881AAC

EPI_ISL_537508
 2020-05-08 2020-09-16
 United States hCoV-19/USA/CA-UCLA-19/2020
 ATTAAAGGTTTATA1- C241T C1441T C3037T G11944T C14408T A23403G C25528T GGG28881AAC GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_537510
 2020-05-08 2020-09-16
 United States hCoV-19/USA/CA-UCLA-20/2020
 A1- C241T C3037T C12473T C14408T A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_539830 MW020067
 2020-05-08 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T G8083T G11083T C14408T A23403G G25563T C28775T G29449T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_540430
 2020-05-08 2020-09-21
 Uruguay hCoV-19/Uruguay/MO-1592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6843T A11338G C13665T G18040T A23403G CTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29666-

EPI_ISL_542889
 2020-05-08 2020-09-23
 United States hCoV-19/USA/TX-HMH-1877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5806T C14408T C20474T A23403G A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542895
 2020-05-08 2020-09-23
 United States hCoV-19/USA/TX-HMH-1899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545070
 2020-05-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8320T C14408T C22311T C23191T A23403G G25563T A29396C G29440A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545084
 2020-05-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545088
 2020-05-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C11345T C14408T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549250 MW040678
 2020-05-08 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T A23403G GGG28881AAC G29757T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_559716
 2020-05-08 2020-09-28
 United Kingdom hCoV-19/England/MILK-45CE8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2618R C8782T T18488C C21846Y T23605G C26261Y T26354W T28144C C29366Y A29596G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560332
 2020-05-08 2020-09-29
 United States hCoV-19/USA/NM-UNM-00678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T C14408T C18877T G21974T A22622G C23124G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560336
 2020-05-08 2020-09-29
 United States hCoV-19/USA/NM-UNM-00692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4148T C7279T C14408T C17372T C18877T G22484T C23124G A23403G G25563T C25836T G28899T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560338
 2020-05-08 2020-09-29
 United States hCoV-19/USA/NM-UNM-00670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A7870G C14408T A23403G G25563T C25710T C27964T C28093T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560340
 2020-05-08 2020-09-29
 United States hCoV-19/USA/NM-UNM-00684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C20555T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568735
 2020-05-08 2020-10-02
 Kenya hCoV-19/Kenya/C4710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C8352T C14408T A23403G G28916T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

LR814160
 2020-05-08 2020-06-16
 United Kingdom NORW-EB8D6
 C241T C3037T T6142C A11991G C14408T C16699T G17338T C17456T G22992A A23403G -27313A C27371T GGG28881AAC

LR821974
 2020-05-08 2020-06-17
 United Kingdom NORW-EB8E5
 ATTAAAG1- C241T C3037T C12915T C14408T G18318T A20268G G21255T G22661T A23403G CT27874TC CACG27879TC C27883T

MT807936
 2020-05-08 2020-07-27
 Brazil SARS-CoV-2/human/BRA/LRV-SARS.CoV-2.1/2020
 ATTAAAGGTTTATACCTTC1- CC20GA C241T C3037T C14408T A23403G T27299C GGG28881AAC C28969T T29148C -29904AAA

MT810086 MT598178
 2020-05-08 2020-06-11
 United States SARS-CoV-2/human/USA/SEARCH-0341-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G5555A A12124T C14408T A20268G A23403G T24076C C28854T

MT810485
 2020-05-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1387-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T T14361C C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810486
 2020-05-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1388-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T T14361C C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810495
 2020-05-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1411-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T T14361C C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810697
 2020-05-08 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1272-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T C29077T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873192
 2020-05-08 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01606/2020
 C241T C1059T C3037T C14408T C17676T A23403G G25252T G25563T

MT967949
 2020-05-08 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6302/2020
 C241T C1059T C1812T C3037T G8264T C10319T C13665T C14408T A23403G G25563T C26645T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

MT967950
 2020-05-08 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6305/2020
 C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

MW001266
 2020-05-08 2020-09-14
 United States SARS-CoV-2/human/USA/256-ETA/2020/P1
 C241T C1059T C3037T C14408T C20371T A23403G G25563T G28109T AAAAAAAAAAAAAAAAAAAAA29883-

MW001268
 2020-05-08 2020-09-14
 United States SARS-CoV-2/human/USA/256-NP-OP/2020
 C241T C1059T C3037T C14408T C20371T A23403G G25563T G28109T AAAAAAAAAAAAAAAAAAAAA29883-

MW001269
 2020-05-08 2020-09-14
 United States SARS-CoV-2/human/USA/257-NP-OP/2020
 C241T C1059T C3037T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_448082
 2020-05-09 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AF58B/2020
 C241T C2508T C3037T C13430T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_449321
 2020-05-09 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4682/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_449322
 2020-05-09 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4705/2020
 C241T T1576C C3037T C14408T A20268G A23403G C25844T C28854T

EPI_ISL_450343
 2020-05-09 2020-05-20
 Bangladesh hCoV-19/Bangladesh/BARJ_CVASU_CTG_511/2020
 ATTAAAGG1- TT9CA C241T C3037T T7734G C14408T C18877T C22444T A23403G G25494T C25511T G25563T C26735T G27281T TCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCATGACGTTCGTGTTGTTTTAGATTTCA27910- C28854T A29879T AA29881GC A29884G A29886G A29888T AA29890TT AA29893CT AA29897TT AA29900TT A29903T

EPI_ISL_450781 MT509503
 2020-05-09 2020-05-22
 India SARS-CoV-2/human/IND/GBRC94/2020
 C110T C241T C3037T C3634T A6350G C14408T C15324T A23403G T25496C C25549T

EPI_ISL_451152 MT509498
 2020-05-09 2020-05-23
 India SARS-CoV-2/human/IND/GBRC107/2020
 C241T C2836T C3037T G5062A C14408T C18877T G20991C C22444T A23403G G25563T C26735T C28854T G29315T G29734T

EPI_ISL_451251
 2020-05-09 2020-05-24
 United States hCoV-19/USA/LA-EVTL090/2020
 C241T C1059T C3037T G11083T C14408T A17712G A23403G G25563T C29247T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_451296
 2020-05-09 2020-05-24
 United States hCoV-19/USA/LA-EVTL135/2020
 C241T T833C C1059T C3037T C11916T C14408T A23403G G25563T C27964T G29449T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_452098
 2020-05-09 2020-05-26
 Denmark hCoV-19/Denmark/ALAB-HH-267/2020
 C241T ATG518- C3037T C6310T C8326T C14408T G20398A A23403G A26530G G27390C G29540T

EPI_ISL_452795
 2020-05-09 2020-05-27
 India hCoV-19/India/NIHSAD-1005-52/2020
 AT1- C6078Y C6310A C6312A C7392T G11083T T12757C C13730T T22483C C23929T C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_452858
 2020-05-09 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AED66/2020
 C241T C3037T C6011T C10116T C14408T A14737G C19017T A23403G GGG28881AAC

EPI_ISL_452904
 2020-05-09 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0675/2020
 C241T C3037T C14408T A23403G C26447T G27281T GGG28881AAC

EPI_ISL_452920
 2020-05-09 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0781/2020
 C241T C2110T C3037T A3409C C14408T A16607G A23403G GGG28881AAC

EPI_ISL_453625
 2020-05-09 2020-05-27
 United Kingdom hCoV-19/England/NOTT-1110A1/2020
 C241T G704A C3037T C5051T C9979T C14408T A23403G A24425C GGG28881AAC

EPI_ISL_453633
 2020-05-09 2020-05-27
 United Kingdom hCoV-19/England/NOTT-111135/2020
 C241T G2393A C3037T C14408T C16289T A23403G G25429T C28253A

EPI_ISL_454575
 2020-05-09 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/38716/2020
 C241T C1059T C1190T C3037T A9848G C11916T C14408T C14913T C18885T C18998T A23403G G25563T G29540A

EPI_ISL_455966
 2020-05-09 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10178/2020
 C241T C3037T G11222T C14408T A23403G

EPI_ISL_455968
 2020-05-09 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10180/2020
 C241T C3037T C5175T T11638C C14408T A23403G GGG28881AAC C29708T G29736T

EPI_ISL_455972
 2020-05-09 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10184/2020
 C241T T1998A C2113T C3037T C7765T C14408T T15225C C15928T C17690T C18877T A23403G G25563T

EPI_ISL_457320
 2020-05-09 2020-06-02
 United Kingdom hCoV-19/England/NORT-292317/2020
 C241T C2558T C5944T T6791G G8042A G10097A G10642T C16616T A23403G C25714T G26144T GGG28881AAC

EPI_ISL_457332 LR814214
 2020-05-09 2020-06-02
 United Kingdom NORW-EA1AF
 ATTAA1- A139G C241T C3037T C14408T A23403G A23570T G26062T GGG28881AAC

EPI_ISL_457353 LR814114
 2020-05-09 2020-06-02
 United Kingdom NORW-EAAB3
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2940T C3037T C14408T C21648T A23403G

EPI_ISL_457354 LR821958
 2020-05-09 2020-06-02
 United Kingdom NORW-EAB38
 ATTAAAGGTTT1- C241T C3037T G5411T G6669T C9430T C14408T C19017T G22992A A23403G C26270T C27630T C27641T GGG28881AAC

EPI_ISL_457360 LR821989
 2020-05-09 2020-06-02
 United Kingdom NORW-EABDE
 ATTA1- C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_457361 LR814178
 2020-05-09 2020-06-02
 United Kingdom NORW-EABED
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C14408T C22450T A23403G A28860G GGG28881AAC

EPI_ISL_457362 LR814197
 2020-05-09 2020-06-02
 United Kingdom NORW-EAC08
 AT1- G11083T C14805T T17247C G26144T

EPI_ISL_457539 LR814041
 2020-05-09 2020-06-02
 United Kingdom NORW-EC5ED
 ATTAAAGGTT1- C241T C1457T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_457541 LR821912
 2020-05-09 2020-06-02
 United Kingdom NORW-EC617
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C823T C3037T C14408T A19356G T19839C A23403G GGG28881AAC

EPI_ISL_457574
 2020-05-09 2020-06-02
 United Kingdom hCoV-19/England/NOTT-1114D2/2020
 C241T G2393A C3037T C14408T C16289T A23403G G25429T C28253A

EPI_ISL_458117
 2020-05-09 2020-06-03
 Oman hCoV-19/Oman/205034603/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C8655T G10096A G10265A C14408T C16293T C18395T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_459911
 2020-05-09 2020-06-05
 India hCoV-19/India/MaxCov0003_CSIR-IGIB/2020
 C6312A T7738K T9743C G10091K G11083T C13730T C23929T A25381M G25634T C26322Y G28077S C28311T

EPI_ISL_459918
 2020-05-09 2020-06-05
 India hCoV-19/India/MaxCov0016_CSIR-IGIB/2020
 C1707Y C6310M C6312A G6885R G11083T G12685K C13730T A15435R A20144W C20429Y C21370M C23929T T24622Y C28311T

EPI_ISL_461389
 2020-05-09 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461390
 2020-05-09 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461971
 2020-05-09 2020-06-06
 United Kingdom hCoV-19/England/PORT-2CF645/2020
 C241T C3037T A8032G C14408T C15324T G20083A A23403G C25413T C25433T C29546T

EPI_ISL_463013
 2020-05-09 2020-06-09
 India hCoV-19/India/ILSCV12742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A C11074T G11083T C11200T A11438G C13730T C16017T C17002T C23929T G25595T C28311T G29315C TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_463014
 2020-05-09 2020-06-09
 India hCoV-19/India/ILSCV12743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C11200T C13730T C16017T C17874T G24605A G25595T C28311T G29315C TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_463017
 2020-05-09 2020-06-09
 India hCoV-19/India/ILSCV12752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A C9163T G11083T C11200T C13730T C16017T C23929T T26773C C28311T GAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29766-

EPI_ISL_463018
 2020-05-09 2020-06-09
 India hCoV-19/India/ILSCV12762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A C9163T G11083T C11200T C13730T C16017T C28311T TGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29691-

EPI_ISL_463019
 2020-05-09 2020-06-09
 India hCoV-19/India/ILSCV13676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C11200T C13730T C16017T C28311T TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_463022
 2020-05-09 2020-06-09
 India hCoV-19/India/ILSCV13715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C11200T C13506T C13730T C16017T C23929T C28311T CAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29686-

EPI_ISL_463027
 2020-05-09 2020-06-09
 India hCoV-19/India/ILSCV14004/2020
 ATTAAAGGTTTA1- C241T C3037T T11092C C14408T A23403G G24757T G25073A GTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29690-

EPI_ISL_464159
 2020-05-09 2020-06-11
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_087/2020
 C241T A1163T C3037T C12672T C14408T A23403G G28001T GGG28881AAC

EPI_ISL_466686 MT601295
 2020-05-09 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_88/2020
 C241T A1163T C3037T T6712G C14408T C21575T A23403G G25563T GGG28881AAC

EPI_ISL_468126
 2020-05-09 2020-06-16
 United States hCoV-19/USA/OR-OHSU-0184/2020
 C241T G487T C3037T C11563T C14408T C18877T GAA20263ATT A23403G G24550A G25563T

EPI_ISL_468448 MT628176
 2020-05-09 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1499/2020
 A1- C241T C337T C379A C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAA29889-

EPI_ISL_468450 MT628178
 2020-05-09 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1503/2020
 C241T C337T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468558 MT628280
 2020-05-09 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1629/2020
 C241T C1059T C2668T C3037T C7039T C14408T C21034Y A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469348
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12525T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469354
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BF01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469361
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BF3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4960T C5312T C6633T T10732C G10986K C14408T T20285G A23403G G25563T G27852T C28005T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469364
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BD8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469382
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BE04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469384
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C0A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12525T C14408T C19170T G19509A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469388
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC C29503Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469397
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BD43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C8090T A10323R C10789T A10994R C14230T C15542Y C16466Y C17441Y C17733T C22097A C27710Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469409
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BF89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C4752T C8152T C11020T C14408T C22000T A23403G C27679T GGG28881AAC T29698G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469424
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BD9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8706K G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469430
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12525T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469439
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BF2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T A16474G C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469443
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BEF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469453
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12525T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469458
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BF10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469462
 2020-05-09 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C01C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12525T C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471644
 2020-05-09 2020-06-22
 India hCoV-19/India/CCMB_L912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C6312A C13730T C18486T C18981T C23929T A27379G GAT27382CTC C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_473328
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F785/2020
 C241T C3037T C4276T C5339T C10747T C14408T G21624T A23403G GGG28881AAC

EPI_ISL_473364
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FA31/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29364T TACGATCGAGTGTACAGTGAACAATGC29748-

EPI_ISL_473365
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FA40/2020
 C241T C3037T C14408T C19488T C22570T A23403G GGG28881AAC

EPI_ISL_473770
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A363G C2146T C3037T C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473771
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10448T C10798A C13862T C14408T A23403G G23593T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473773
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C21575T C21614T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473975
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163644/2020
 ATTA1- C241T C829T C1059T C2455T C3037T C14408T C16887T A23403G G25563T G27415A G28371T

EPI_ISL_474001
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163811/2020
 ATTA1- G1440A G2891A -11075TTT G11083T G14118A C28311T G28851T

EPI_ISL_474022
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163996/2020
 ATT1- C241T C1684T C3037T T5465C T6025C G10255T C13264T C14408T G21624T A23403G G24102A GGG28881AAC

EPI_ISL_474040
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163ADF/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_474047
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163B63/2020
 C241T C3037T T5465C T6025C G10255T C14408T G21624T A23403G G24102A GGG28881AAC

EPI_ISL_474055
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163BEB/2020
 AT1- C241T ATG518- C3037T C6406T T9643C C14408T G19846T A23403G GGG28881AAC G29431T G29777T

EPI_ISL_474058
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163C24/2020
 AT1- C241T C3037T T5465C T6025C G10255T C14408T G21624T A23403G G24102A GGG28881AAC C29754Y

EPI_ISL_474071
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163D03/2020
 AT1- C241T C3037T T5465C T6025C G10255T C14408T G21624T A23403G G24102A GGG28881AAC

EPI_ISL_474073
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163D21/2020
 C241T C3037T T5465C T6025C G10255T C13264T C14408T G21624T A23403G G24102A GGG28881AAC

EPI_ISL_474095
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163E88/2020
 A1- C241T C3037T T5465C T6025C G10255T C13264T C14408T G21624T A23403G G24102A GGG28881AAC

EPI_ISL_474113
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163FC1/2020
 A12W C21Y C241T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_474126
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1640BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T G1589R C3037T C14408T G16935T A23403G G25429T G25644T A27648G G29474T

EPI_ISL_474165
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164379/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T T5465C T6025C G10255T C13264T C14408T G19086T G21624T A23403G G24102A GGG28881AAC

EPI_ISL_474190
 2020-05-09 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164528/2020
 ATT1- C241T C3037T T5465C T6025C G10255T C13264T C14408T G21624T A23403G G24102A GGG28881AAC

EPI_ISL_476565
 2020-05-09 2020-06-25
 Argentina hCoV-19/Argentina/Heritas_HG007/2020
 C241T C3037T A14164C C14408T A23403G G26416T T27299C GGG28881AAC T29148C

EPI_ISL_477126
 2020-05-09 2020-06-28
 Bangladesh hCoV-19/Bangladesh/CHRF_0013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T A1573G C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_478180
 2020-05-09 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2215G C3037T A10874G C12823T C14408T A23403G G25429T G25440A C25916T T26677C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478200
 2020-05-09 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4756C C10029T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478201
 2020-05-09 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T C29545T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478203
 2020-05-09 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C19488T A23403G G24998C T25580C C28836T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478257
 2020-05-09 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478258
 2020-05-09 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479657
 2020-05-09 2020-07-01
 India hCoV-19/India/NIV-25949/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C3117T C3634T T13387C C14408T C15324T C20233T G22203T A23403G C26356G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480282
 2020-05-09 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV199/2020
 C241T C3037T G8017T C12809T C14408T A23403G GGG28881AAC

EPI_ISL_480289
 2020-05-09 2020-07-01
 Turkey hCoV-19/Turkey/GLAB-CoV210/2020
 C241T G881A C3037T C9636T C14408T C18877T G20668A C22444T A23403G G25563T C26735T C27476T C28854T

EPI_ISL_480376 MT772544
 2020-05-09 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11083T C14408T C16260T C22329T A23403G G25563T G25981T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483221
 2020-05-09 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0557-SAN/2020
 ATTAAAGGTTTA1- C241T C3037T T3282C C14408T A19727C A20268G A23403G T24076C C28854T

EPI_ISL_484302
 2020-05-09 2020-07-08
 United Kingdom hCoV-19/England/NORT-29D798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6196T C12073T C14408T A23403G G27750T C29762T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486335 MT750491
 2020-05-09 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2092/2020
 ATTAAAGGTTT1- A30R C241T TGGTCATGTTATGGT508- C3037T C8327T C14408T A23122R A23403G T24217Y T24721K A24862G T25902W T25908W G25913S

EPI_ISL_486390
 2020-05-09 2020-07-10
 Latvia hCoV-19/Latvia/025/2020
 C241T G520T C3037T G3206T G4207T TG13575CT C14408T C22458T C22530T A23403G C25831T GGG28881AAC

EPI_ISL_486410
 2020-05-09 2020-07-10
 Latvia hCoV-19/Latvia/027/2020
 C36G C241T C3037T C4202T C4752T C10450T G11083T G14371T C14408T C15237T C15324T A23403G G26713T

EPI_ISL_486418
 2020-05-09 2020-07-10
 Latvia hCoV-19/Latvia/035/2020
 C241T C3037T A8051G C14408T A23403G GGG28881AAC

EPI_ISL_489100
 2020-05-09 2020-07-14
 United Kingdom hCoV-19/England/NORT-292380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15225C T15366C A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489133
 2020-05-09 2020-07-14
 United Kingdom hCoV-19/England/NORT-292353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7267T G9479T C9559Y C14408T A18640G A20268G T20592C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489265
 2020-05-09 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FE445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C13551T C14408T A23403G A23442G A23586G C25904T T26715K G26720R C28708T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489276
 2020-05-09 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FE357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489277
 2020-05-09 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-101AE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489278
 2020-05-09 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FE4CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C17004T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489280
 2020-05-09 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FE2E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T A5311G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489286
 2020-05-09 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-1017EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- C1420T C3037T C14408T A23403G C26907T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489295
 2020-05-09 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-101921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T G4105T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489299
 2020-05-09 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FE24B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC G29745S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490064
 2020-05-09 2020-07-15
 Singapore hCoV-19/Singapore/614/2020
 G3304T C6310A C6312A C11074T G11083T C13730T C19524T T19584C C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_490065
 2020-05-09 2020-07-15
 Singapore hCoV-19/Singapore/615/2020
 C6310A C6312A G11083T C13730T C19524T C23185T C23929T C27247A C28311T T28867A AAAAAAAAAAAA29892-

EPI_ISL_490075
 2020-05-09 2020-07-15
 Singapore hCoV-19/Singapore/625/2020
 C6310A C6312A T8672C C10728T G11083T C13730T C19524T C23929T C25000T C28311T C29218T AAAAAAAAAAAA29892-

EPI_ISL_491153
 2020-05-09 2020-07-16
 Oman hCoV-19/Oman/C-16516/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T G2144T C3037T C13665T C14408T T18111A G18985T A23403G C27804T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_493020
 2020-05-09 2020-07-20
 United States hCoV-19/USA/UT-03305/2020
 C66T C241T C959T C1059T C3037T G10947A C14408T G14857T C15352T C21364T A23403G C24378T G25563T TTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACAC27701- C27964T C29095T

EPI_ISL_493913
 2020-05-09 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C289A C3037T G10097A C14408T A23403G C23731T C25160T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493914
 2020-05-09 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493916
 2020-05-09 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27686T GGG28881AAC C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494585
 2020-05-09 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1407/2020
 T11C C241T C3037T G3485A A6342G C9474T C14408T A20268G A23403G C28854T

EPI_ISL_495669 MT821746
 2020-05-09 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1219/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495670 MT821594
 2020-05-09 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1220/2020
 AT1- C241T C1059T C3037T C12880T C14408T A20475G C21575T A23403G G25563T C26013T C29366T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495674 MT821720
 2020-05-09 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1224/2020
 ATT1- G1401A C8782T C17747T A17858G C18060T A19308G T28144C T29760A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495676 MT821590
 2020-05-09 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1226/2020
 AT1- C241T C3037T C10802T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495677 MT821625
 2020-05-09 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1227/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495680 MT821644
 2020-05-09 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1230/2020
 A1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495681 MT821564
 2020-05-09 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1231/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29572T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_495682 MT821619
 2020-05-09 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1232/2020
 ATT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495683 MT821658
 2020-05-09 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1233/2020
 ATTAAAGGTTTAT1- C241T C3037T A5538T C10733T C14408T G16813A A16872C A23403G T25783C A27914T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_499454
 2020-05-09 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2065T C3037T T9485C C10376T C14408T G18583T A23403G G23868T G24368T G25563T G27390C G29773T A29903-

EPI_ISL_508324
 2020-05-09 2020-08-04
 India hCoV-19/India/IB46/2020
 ATTAAAGGTTTATACCTTCC1- C241T C2836T C3037T A3097G C5672T C14408T C18877T C22444T A23403G G25563T C26735T C28854T G29868A

EPI_ISL_508328
 2020-05-09 2020-08-04
 India hCoV-19/India/IB50/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T T4732C C8917T G9389A C14408T A23403G G27390C GGG28881AAC G29868A

EPI_ISL_508387
 2020-05-09 2020-08-04
 India hCoV-19/India/IK63/2020
 AT1- C241T A1350T C3037T G9526T C14408T A23403G G29868A

EPI_ISL_509099
 2020-05-09 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2161G C3037T C14408T C16376T G17562T C18877T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509101
 2020-05-09 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2161G C3037T C14408T C16376T G17562T C18877T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509123
 2020-05-09 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G G25563T G28027T G29742T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509125
 2020-05-09 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0387/2020
 ATTA1- C241T A2161G C3037T C14408T C16376T G17562T C18877T A23403G G25563T

EPI_ISL_509128
 2020-05-09 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0393/2020
 AT1- C241T G487T T1465C C3037T C11563T C14408T C18877T GAA20263ATT A23403G G24550A G25563T

EPI_ISL_510567
 2020-05-09 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2229/2020
 ATTAAAG1- C241T C1059T C3037T C4320T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_510573
 2020-05-09 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2235/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G C24378T G25563T G29179T G29779T AAAAA29899-

EPI_ISL_510574
 2020-05-09 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2236/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_510575
 2020-05-09 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2237/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510576
 2020-05-09 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2238/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510577
 2020-05-09 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2239/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_510578
 2020-05-09 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2240/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_510580
 2020-05-09 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2242/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_510581
 2020-05-09 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2243/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAA29899-

EPI_ISL_510826
 2020-05-09 2020-08-07
 Sweden hCoV-19/Sweden/20-51417/2020
 C241T C1059T C3037T A6342G C14408T A23403G G24368T G25563T A28294C G29742T

EPI_ISL_515954
 2020-05-09 2020-08-20
 India hCoV-19/India/nimh-13855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T4008C C8782T G11083T G22468T A26380G T28144C G28878A G29742A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_523357
 2020-05-09 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C8480T C14408T G15448T A23403G C25578T GGG28881AAC TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_523467
 2020-05-09 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T A8946G C11109T C14408T A23403G C24642T G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523572
 2020-05-09 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G T22020C A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524405
 2020-05-09 2020-08-28
 United States hCoV-19/USA/UT-08684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C10789T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526513
 2020-05-09 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T C17550T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527882
 2020-05-09 2020-09-05
 Nigeria hCoV-19/Nigeria/ED25-CV163/2020
 ATTAAA1- C241T C3037T C11195T C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_528801
 2020-05-09 2020-09-09
 United Kingdom hCoV-19/England/BHRT-24B3521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T T8857G C12974T C14408T G16665A A23403G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530091
 2020-05-09 2020-09-10
 Spain hCoV-19/Spain/MD-LP95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4423T G11083T G26144T TAATCAGTG29682- ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_537517
 2020-05-09 2020-09-16
 United States hCoV-19/USA/CA-UCLA-21/2020
 AT1- C241T C3037T T4711C C14408T A23403G A28032T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_545078
 2020-05-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C10755T C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545083
 2020-05-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G19690T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545101
 2020-05-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15006C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545106
 2020-05-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4931A C6990T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545108
 2020-05-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545109
 2020-05-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545110
 2020-05-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545225
 2020-05-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15006C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545236
 2020-05-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3784T C14408T C20628T A23403G C24130T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549251 MW040679
 2020-05-09 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1469/2020
 ATTAAA1- C241T C673T C3037T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_560334
 2020-05-09 2020-09-29
 United States hCoV-19/USA/NM-UNM-00646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T C14408T C18877T G21974T A22622G C23124G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560644
 2020-05-09 2020-09-29
 France hCoV-19/France/IdF8763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11083T G13723T C14408T C17402T A23403G G25563T G26918T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT607246
 2020-05-09 2020-06-13
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_087/2020
 C241T A1163T C3037T C12672T C14408T A23403G G28001T GGG28881AAC

MT810493
 2020-05-09 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1407-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G3485A A6342G C9474T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811237
 2020-05-09 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0557-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T T3282C C14408T A19727C A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT873051
 2020-05-09 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01623/2020
 C241T C2106T C3037T C8318A C14408T C16260T T18278C A23403G C26456T C28603T G28899T A29806T

MT873134
 2020-05-09 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01592/2020
 C241T C1059T C3037T C9169T A9483T C14408T C15222T G18636T C19884T C23191T A23403G G25563T

MT873346
 2020-05-09 2020-08-08
 United States SARS-CoV-2/human/USA/MA-MGH-01593/2020
 C241T C1059T C3037T C11916T C14408T C18788T C18998T A23403G G25563T G29540A

EPI_ISL_449323
 2020-05-10 2020-05-19
 United Kingdom hCoV-19/Scotland/EDB4706/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_450339
 2020-05-10 2020-05-20
 Bangladesh hCoV-19/Bangladesh/BARJ_CVASU_CTG_501/2020
 ATTAAAGGTTTATAC1- T17G CA21GT G24T AACAAAC26G A35G A38G C40- T42C A6729G C8782T A10329G C12484T C15324T C15738T G22468T T28144C G28878A G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_450345
 2020-05-10 2020-05-20
 Bangladesh hCoV-19/Bangladesh/BARJ_CVASU_CTG_518/2020
 ATTAAAGGTTTAT1- C8782T A10323G G22468T C23320T A25505T C28087T T28144C G28878A G29742A T29856A T29858A GAATGACAAAAAAAAAAAAAAAAAAAAAAA29864T A29895T AA29897GT A29901G A29903GCGTCGTGT

EPI_ISL_450785 MT509507
 2020-05-10 2020-05-22
 India SARS-CoV-2/human/IND/GBRC97a/2020
 C241T C313T C875T C3037T C5700A G11083T G13617T C14408T C17135T G19086T A23403G GGG28881AAC

EPI_ISL_450786 MT509510
 2020-05-10 2020-05-22
 India SARS-CoV-2/human/IND/GBRC97b/2020
 C241T C313T C875T C3037T C5700A G11083T G13617T C14408T C17135T G19086T A23403G G27916A GGG28881AAC

EPI_ISL_451153 MT509502
 2020-05-10 2020-05-23
 India SARS-CoV-2/human/IND/GBRC108/2020
 C241T C2836T C3037T C14408T G18380T C18877T G21724T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_452864
 2020-05-10 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AEDC0/2020
 C241T C1170T C3037T A3522G C11379T C14408T G20464T A23403G GGG28881AAC C29743T

EPI_ISL_452865
 2020-05-10 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AEDDF/2020
 C241T A2554G C2650T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_452869
 2020-05-10 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AEEBE/2020
 C218T C241T C3037T T10810C C14408T T15207A T17835C C21855T A23403G T24982C

EPI_ISL_452938
 2020-05-10 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0AF1/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_455570
 2020-05-10 2020-05-31
 United States hCoV-19/USA/MN-GMF-02870/2020
 C241T C593T C1059T C2910T C3037T C9866T C14408T A14747G A20755C G22017T A23403G G25563T

EPI_ISL_455573
 2020-05-10 2020-05-31
 United States hCoV-19/USA/WI-GMF-M00001/2020
 C241T C715T C1059T C3037T T3741C T9067C C11916T C14408T A23403G A23586G G25563T

EPI_ISL_455574
 2020-05-10 2020-05-31
 United States hCoV-19/USA/WI-GMF-M00002/2020
 C241T C843T C3037T A12719G C14408T C19164T A23403G G25699T C26753T GGG28881AAC

EPI_ISL_455967
 2020-05-10 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10179/2020
 C241T C3037T C5175T T11638C C14408T A23403G GGG28881AAC C29708T G29736T

EPI_ISL_455970
 2020-05-10 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10182/2020
 C241T C2113T C3037T C7765T C14408T T15225C C15928T C17690T C18877T G21220T A23403G G25563T

EPI_ISL_455973
 2020-05-10 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10185/2020
 C241T G1085T C3037T C6538T C13038T C14408T G15243T A20268G C21575T A23403G

EPI_ISL_456565 MT612253
 2020-05-10 2020-06-02
 Australia SARS-CoV-2/human/AUS/VIC1664/2020
 C241T A1202G C3037T C14408T C17825T C18877T A23403G G25563T C25710T

EPI_ISL_456886
 2020-05-10 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11575T A11794G A12026T C14408T A23403G G26450A A28856C AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456887
 2020-05-10 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5822Y A11794G A12026T C14408T A23403G G26450A A28856C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_457316
 2020-05-10 2020-06-02
 United Kingdom hCoV-19/England/NORT-28BF1D/2020
 C241T A513G C3037T C14408T A15580G A23403G C27630T G28436T GGG28881AAC

EPI_ISL_457355 LR814109
 2020-05-10 2020-06-02
 United Kingdom NORW-EAB47
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G5411T G6669T C9430T C14408T C19017T C19170T G22992A A23403G C26270T C27630T C27641T GGG28881AAC

EPI_ISL_457370 LR821952
 2020-05-10 2020-06-02
 United Kingdom NORW-EACF9
 ATTAA1- C241T C3037T C12915T C14408T A20268G A23403G

EPI_ISL_457529 LR821850
 2020-05-10 2020-06-02
 United Kingdom NORW-EC4D1
 A1- C241T C3037T C10030T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_457530 LR814013
 2020-05-10 2020-06-02
 United Kingdom NORW-EC4E0
 ATTA1- C241T C3037T C8645Y C10626T C14408T T18083C C22482T A23403G G28077T GGG28881AAC

EPI_ISL_457534 LR821854
 2020-05-10 2020-06-02
 United Kingdom NORW-EC592
 C36Y C241T C3037T C12915T C14408T A20268G G21255T A23403G

EPI_ISL_457535 LR814023
 2020-05-10 2020-06-02
 United Kingdom NORW-EC5A1
 ATT1- C36Y C241T C3037T C12915T C14408T A20268G G21255T G21793R G21795K A23403G

EPI_ISL_457544 LR814005
 2020-05-10 2020-06-02
 United Kingdom NORW-EC653
 ATTAAAGGTTTATACCT1- C241T C3037T A9749G C14408T A23403G A24232G G25429T G27788T

EPI_ISL_457545 LR814216
 2020-05-10 2020-06-02
 United Kingdom NORW-EC662
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C7417T C13862T C14408T T19330C A23403G C28836T

EPI_ISL_457546 LR814020
 2020-05-10 2020-06-02
 United Kingdom NORW-EC671
 A1- C241T C3037T C10626T C14408T A23403G G28077T GGG28881AAC

EPI_ISL_457547 LR814037
 2020-05-10 2020-06-02
 United Kingdom NORW-EC680
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C10626T C14408T C21646Y A23403G G28077T GGG28881AAC

EPI_ISL_457548 LR814028
 2020-05-10 2020-06-02
 United Kingdom NORW-EC69F
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C13862T C14408T T19330C A23403G T25473C C28836T

EPI_ISL_457551 LR814004
 2020-05-10 2020-06-02
 United Kingdom NORW-EC6DB
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T718C C1713A C2940T C3037T C9438T A12949G C14408T A23403G

EPI_ISL_459922
 2020-05-10 2020-06-05
 India hCoV-19/India/MaxCov0020_CSIR-IGIB/2020
 C1707Y C6310M C6312A G11083T G12685K C13730T C21196M T21497W G21518R C23929T T24622Y C28311T

EPI_ISL_459940
 2020-05-10 2020-06-05
 India hCoV-19/India/MaxCov0038_CSIR-IGIB/2020
 C1707Y C6310M C6312A G11083T G12685K C13730T A15435R G19936K C20259M G20317K C20428S G21159K C21335Y C23929T T24622Y C28311T

EPI_ISL_461391
 2020-05-10 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462435 MT569471
 2020-05-10 2020-06-05
 Serbia SARS-CoV-2/human/SRB/KV22-05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C3037T G10762T C14408T C15324T A23403G G28881T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_463024
 2020-05-10 2020-06-09
 India hCoV-19/India/ILSCV13907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2143T C8782T C10138T C10702T G22468T T28144C G28326T G28878A AGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29704-

EPI_ISL_463025
 2020-05-10 2020-06-09
 India hCoV-19/India/ILSCV13921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T490C C1498T G1820A C6310A C6312A G11083T C13730T C19524T C23929T C28311T GTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29690-

EPI_ISL_463026
 2020-05-10 2020-06-09
 India hCoV-19/India/ILSCV13929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C2143T C10138T C10702T A13711G T15044C G22468T T28144C G28326T G28878A G29742A ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_463031
 2020-05-10 2020-06-09
 India hCoV-19/India/ILSCV14374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1820A A1846T C6270T C6310A C6312A G9923A G11083T C13730T G19429T C19524T A22012C A25381C C28311T CAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29686-

EPI_ISL_463032
 2020-05-10 2020-06-09
 India hCoV-19/India/ILSCV14743/2020
 AT1- C241T C3037T C14408T G15451A T20874A C21297A C21614T A23403G GTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29690-

EPI_ISL_463033
 2020-05-10 2020-06-09
 India hCoV-19/India/ILSCV14831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2783C C8782T C10202T G11083T C21575T G22468T T24671C G25855C C26681T T28144C G28878A ATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29684-

EPI_ISL_463034
 2020-05-10 2020-06-09
 India hCoV-19/India/ILSCV14847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A2783C C7945T C8782T C10202T G11083T G22468T C26681T T28144C G28878A TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_464165
 2020-05-10 2020-06-11
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_060/2020
 C241T C751T A1163T A2057G C3037T C5621T C14408T A23403G C27944T GGG28881AAC AAAAA29899-

EPI_ISL_465164
 2020-05-10 2020-06-11
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_059/2020
 C241T C751T A1163T A2057G C3037T C5621T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_466629 MT601278
 2020-05-10 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_56/2020
 C241T A1163T C3037T A4503T C14408T G18040T A23403G C28115T GGG28881AAC

EPI_ISL_466630 MT601279
 2020-05-10 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_57/2020
 C241T A1163T G2246A C3037T G11083T C14408T A16474G C20402T G21604T A23403G GGG28881AAC

EPI_ISL_466636 MT601280
 2020-05-10 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_58/2020
 C241T C751T A1163T A2057G C3037T C5621T C14408T A23403G GGG28881AAC

EPI_ISL_467195
 2020-05-10 2020-06-12
 Spain hCoV-19/Spain/COV003724/2020
 C147Y C8782T T9477A C14805T A16438R C16466Y A19629G A22151G C22995S C23277Y A23746T C25463Y G25979T T28144C C28657T C28863T

EPI_ISL_467384
 2020-05-10 2020-06-13
 United States hCoV-19/USA/NY-NYUMC891/2020
 C241T C1059T C3037T C10851T C14408T A23403G G25563T

EPI_ISL_468073
 2020-05-10 2020-06-16
 Bangladesh hCoV-19/Bangladesh/CHRF_0005/2020
 A1- C241T A1163T C3037T C14408T A19727G G21600T A23403G GGG28881AAC T29726- C29750T

EPI_ISL_469365
 2020-05-10 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6732C G10097A C10369T C14408T A23403G C23731T G26314K G28655K GGG28881AAC G29747K CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469366
 2020-05-10 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6732C G10097A C10369T C14408T A23403G C23731T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469370
 2020-05-10 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C0B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469376
 2020-05-10 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T C15279Y A23403G G23608T C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469381
 2020-05-10 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C0FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C14408T A23403G G25563T C29686Y G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469407
 2020-05-10 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469414
 2020-05-10 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C03A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6732C G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469422
 2020-05-10 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C1BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469436
 2020-05-10 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C00D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12525T C14408T C19170T G19509A A23403G G28001T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469437
 2020-05-10 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C350Y C3037T G7798T C8251Y C12786T C14408T A20268G C21639S C22281Y G22992R C23277M A23403G C27577T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469451
 2020-05-10 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C37D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC C29386M CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469454
 2020-05-10 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6732C G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469827
 2020-05-10 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C678T C3037T C3096Y C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473292
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1633F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T4630C C14408T C14741T C22997T A23403G T24923C G25459T

EPI_ISL_473362
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F9F8/2020
 C241T C3037T A10781G C14408T C22570T A23403G C24138T GGG28881AAC A29763G

EPI_ISL_473366
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FA5F/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29364T TACGATCGAGTGTACAGTGAACAATGC29748-

EPI_ISL_473367
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FA6E/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29364T TACGATCGAGTGTACAGTGAACAATGC29748-

EPI_ISL_473774
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C2669T C3037T C14408T T21607C C23188T A23403G G27626C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473776
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10202T C10448T C10798A C13862T C14408T A23403G G23593T C27610T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473777
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_473969
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1635DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T G10097A G11083T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_473992
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16378D/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_474013
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1638D5/2020
 ATTAAAG1- G1440A G2891A -11075TTT G11083T G14118A C28311T G28851T

EPI_ISL_474030
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163A39/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_474112
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163FB2/2020
 ATTA1- T221C C241T C3037T C3634T C14408T C17977Y A23403G G25720K G25726T GGG28881AAC

EPI_ISL_474125
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1640AF/2020
 AT1- C241T C3037T G6981T C14408T C14786T T19521C A23403G G23868T G28703A GGG28881AAC

EPI_ISL_474155
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1642C7/2020
 ATTAAAGGTTTATACCTTCCCA1- C222T C241T C2232T C3037T G6563A C7932T C8964T C13274T C14097T C14408T C21780T A23403G GGG28881AAC

EPI_ISL_474167
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164397/2020
 ATTA1- C241T C3037T C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_474177
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16443A/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C9438T G11083K C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_474178
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164449/2020
 AT1- C241T G675R C3037T A3911G C13957Y C14408T A23403G T25272C C26028T

EPI_ISL_474202
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1645EC/2020
 ATTA1- C241T G1589R C3037T A11438G C14408T A23403G G25429T G29474T

EPI_ISL_474204
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164607/2020
 ATTAAAGGTT1- C241T A489G C3037T T5465C A11506G C14408T G21624T A23403G G24102A GGG28881AAC

EPI_ISL_474208
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164643/2020
 ATTAAAGGTT1- C241T C3037T C10765T G11801A C14408T G17944A G18186S T19839C A23403G C23812T G25552T GGG28881AAC

EPI_ISL_474209
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-164652/2020
 ATT1- C222T C241T C3037T C8964T C13274T C14097T C14408T C21780T A23403G GGG28881AAC

EPI_ISL_475379
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C4C8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475487
 2020-05-10 2020-06-23
 United Kingdom hCoV-19/England/SHEF-D085C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1473T C3037T G7798T C14408T A20268G A23403G TTTTAAAGTTTCCATTTGGAATCTTGA27264- C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475516
 2020-05-10 2020-06-23
 Sweden hCoV-19/Sweden/20-14518/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475517
 2020-05-10 2020-06-23
 Sweden hCoV-19/Sweden/20-14519/2020
 C241T C3037T C5100T C14408T A17888G C21855T A23403G GGG28881AAC C29750T

EPI_ISL_477295
 2020-05-10 2020-06-29
 United States hCoV-19/USA/MN-MDH-1206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1812T C3037T C5646T C10319T C13665T C14408T C21721T G22520T A23403G G24497T G25563T C27710T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_478204
 2020-05-10 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7814C C14408T G18213T A18818G A21137G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478205
 2020-05-10 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C14503T A23403G C27532T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478259
 2020-05-10 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478260
 2020-05-10 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T967C G970A C3037T C9169T C14408T A20268G G22225T A23403G T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478261
 2020-05-10 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479283
 2020-05-10 2020-06-30
 United Kingdom hCoV-19/England/SHEF-D321F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T C14408T A23403G C24099G C26464T GGG28881AAC A28920G G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482444
 2020-05-10 2020-07-03
 United States hCoV-19/USA/OR-PROV-202/2020
 C241T T568A C3037T C14408T G20980A A23403G

EPI_ISL_482445
 2020-05-10 2020-07-03
 United States hCoV-19/USA/OR-PROV-203/2020
 C241T T2698C C3037T C11563T G14209T C14408T C17678T C17766T C18877T A19068C A23403G G25563T C29675T C29754T

EPI_ISL_482771
 2020-05-10 2020-07-06
 Egypt hCoV-19/Egypt/MASRI-025/2020
 GGT23CTA C241T C3037T C9565T C14408T A23403G C23757G G25563T C26339T TTC26354CAT C28849T TG29840CT

EPI_ISL_482772
 2020-05-10 2020-07-06
 Egypt hCoV-19/Egypt/MASRI-026/2020
 C241T T262C C3037T C3653T C14408T C19374T A23403G A25020C G25563T G25606T

EPI_ISL_483225
 2020-05-10 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0563-SAN/2020
 ATTA1- C241T C2062T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_483580
 2020-05-10 2020-07-08
 Singapore hCoV-19/Singapore/557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- A3046G C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483586
 2020-05-10 2020-07-08
 Singapore hCoV-19/Singapore/563/2020
 AT1- C6312A C8139T G11083T C13730T C23929T G25769A C28311T G28436T AAAAAAAAAAAA29892-

EPI_ISL_483588
 2020-05-10 2020-07-08
 Singapore hCoV-19/Singapore/565/2020
 ATTA1- C6310A C6312A G11083T C13730T G18315A C19524T C23185T C23929T G26730K C28311T AAAAAAAAAAAA29892-

EPI_ISL_484304
 2020-05-10 2020-07-08
 United Kingdom hCoV-19/England/NORT-29D877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C3037T C8334T A10194C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484305
 2020-05-10 2020-07-08
 United Kingdom hCoV-19/England/NORT-29D8B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G C25480T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486388
 2020-05-10 2020-07-10
 India hCoV-19/India/nimh-14723/2020
 ATT1- AT12CA TA25C G1069A C6312A G11083T C13730T C23929T G28188C C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486389
 2020-05-10 2020-07-10
 India hCoV-19/India/nimh-15835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C6312A G11083T C13730T A21792T C23929T G24812T C25006T C25546A C28311T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_486408
 2020-05-10 2020-07-10
 India hCoV-19/India/nimh-15819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C6312A G11083T C13730T C15352T A21792T C23929T G24812T C25006T C25546A C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486409
 2020-05-10 2020-07-10
 India hCoV-19/India/nimh-15896/2020
 ATTAAAGGTTTATACCTTCCCAG1- C6312A C6997A G11083T C13730T A21792T G21824C C23929T G24812T C25006T C25546A A28249G C28311T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486413
 2020-05-10 2020-07-10
 Latvia hCoV-19/Latvia/030/2020
 C241T C3037T TG13575CT C14408T A23403G C25831T GGG28881AAC

EPI_ISL_488057
 2020-05-10 2020-07-14
 United Kingdom hCoV-19/England/NORT-29ECD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6537A C11001T C12294Y C13862T C14408T A23403G A25448G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488061
 2020-05-10 2020-07-14
 United Kingdom hCoV-19/England/NORT-29D965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488088
 2020-05-10 2020-07-14
 United Kingdom hCoV-19/England/NORT-29D895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488126
 2020-05-10 2020-07-14
 United Kingdom hCoV-19/England/NORT-29D947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11830G C14408T A23403G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488139
 2020-05-10 2020-07-14
 United Kingdom hCoV-19/England/NORT-29ED1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C3037T C8334T A10194C C14408T G19824A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488158
 2020-05-10 2020-07-14
 United Kingdom hCoV-19/England/NORT-29D886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A21717T A23403G GGG28881AAC C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488847
 2020-05-10 2020-07-14
 United Kingdom hCoV-19/England/WSFT-25C1AF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTCATGTTA510- C3037T G9460A G11083T C14408T C16260T A20268G A23403G G28237T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489253
 2020-05-10 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-10188E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C12076T C14408T C17004T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490062
 2020-05-10 2020-07-15
 Singapore hCoV-19/Singapore/612/2020
 C6310A C6312A A9018M A9409G G11083T C13730T G15006T C19524T T20406Y C23185T C23929T G24764A C25308A C28311T AAAAAAAAAAAA29892-

EPI_ISL_490069
 2020-05-10 2020-07-15
 Singapore hCoV-19/Singapore/619/2020
 C6310A C6312A A9175G G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_490072
 2020-05-10 2020-07-15
 Singapore hCoV-19/Singapore/622/2020
 C6310A C6312A T8672Y A9409G G11083T C13730T G15006T C19524T C23185T C23929T G24764R C25308A C28311T AAAAAAAAAAAA29892-

EPI_ISL_490073
 2020-05-10 2020-07-15
 Singapore hCoV-19/Singapore/623/2020
 C6310A C6312A A9175G G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_490076
 2020-05-10 2020-07-15
 Singapore hCoV-19/Singapore/626/2020
 C6310A C6312A G10870T G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_490077
 2020-05-10 2020-07-15
 Singapore hCoV-19/Singapore/627/2020
 C4754T C6310A C6312A G11083T C13730T G15006T C17518T C19524T C23185T C23929T C25308A C28311T AAAAAAAAAAAA29892-

EPI_ISL_490078
 2020-05-10 2020-07-15
 Singapore hCoV-19/Singapore/628/2020
 C6310A C6312A C10349T G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_490089
 2020-05-10 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC55122/2020
 ATTAAAGGTTTAT1- C241T G2458T C3037T C4002T G5210T G8353A C8950T G10097A C13536T C14408T A23403G C23731T GGAACTGTA25423- GGG28881AAC G29711T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_490478
 2020-05-10 2020-07-15
 United Kingdom hCoV-19/England/NORT-29EC6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490479
 2020-05-10 2020-07-15
 United Kingdom hCoV-19/England/NORT-29EC7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2854G C3037T G5716T C8772T G8792A C14408T C15830A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490481
 2020-05-10 2020-07-15
 United Kingdom hCoV-19/England/NORT-29ECA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29743T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491968
 2020-05-10 2020-07-18
 Oman hCoV-19/Oman/205035037/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A6876G G10265A C14408T C16293T A23403G GGG28881AAC G29747T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_493536
 2020-05-10 2020-07-21
 United Kingdom hCoV-19/England/NORT-29ECB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5567A C14408T A20262G A23403G C25350T G29081T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493537
 2020-05-10 2020-07-21
 United Kingdom hCoV-19/England/NORT-29ECC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17922C A18163G A23403G C26037T G27996T G28395A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495093
 2020-05-10 2020-07-22
 United Kingdom hCoV-19/England/WSFT-25C1A8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3263G C9474T C14408T C21691T A23403G C25047T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495455
 2020-05-10 2020-07-22
 Turkey hCoV-19/Turkey/KU-045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C7765T C8326T C14408T C17690T C18877T A23403G G25563T TCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29753-

EPI_ISL_495653 MT821789
 2020-05-10 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1478/2020
 AT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_495684 MT821689
 2020-05-10 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1234/2020
 ATTAAAGGTTTAT1- C241T C1204T G1747A C3037T C14408T C14676T C16289T A23403G G25429T C27741T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495700 MT821655
 2020-05-10 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1250/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495701 MT821772
 2020-05-10 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1251/2020
 A1- G910T C3311A C8782T G17671T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_500961
 2020-05-10 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1066AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G713T C3037T A10197W C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500970
 2020-05-10 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1066E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500977
 2020-05-10 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1066DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500992
 2020-05-10 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-10687A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501008
 2020-05-10 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1066CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G G27708A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501044
 2020-05-10 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-10686B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6723T A10323G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501055
 2020-05-10 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-10685C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T T20799C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501617
 2020-05-10 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260F1B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4148A G4285A G6320T C14408T A23403G G24821T GGG28881AAC A29424G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507256
 2020-05-10 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII13532S/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_509097
 2020-05-10 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2973T C3037T C11916T C14408T A23403G G25563T G28027T G29742T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509126
 2020-05-10 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11563T C14408T C18877T GAA20263ATT A23403G G24550A G25563T

EPI_ISL_509129
 2020-05-10 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0396/2020
 ATTA1- C241T C3037T C11563T C14408T C18877T GAA20263ATT A23403G G24550A G25563T C25836T

EPI_ISL_509428
 2020-05-10 2020-08-05
 United States hCoV-19/USA/AL-SV107V1/2020
 C241T C3037T C10833T A12967G C13335T C14408T A15189G G19300T C22498T A23403G C29002T

EPI_ISL_509942 MT846629
 2020-05-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T T19839C A23403G C23707T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509944 MT846631
 2020-05-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C16349T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510390
 2020-05-10 2020-08-06
 Spain hCoV-19/Spain/COV005132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A20268G G20377A A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510583
 2020-05-10 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2245/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_510584
 2020-05-10 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2246/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_510585
 2020-05-10 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2247/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_510586
 2020-05-10 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2248/2020
 A1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510587
 2020-05-10 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2249/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C26111A G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_510588
 2020-05-10 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_526686
 2020-05-10 2020-09-01
 United States hCoV-19/USA/NY-MH001867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C3037T C14408T T21003C C21742T A23403G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_526791
 2020-05-10 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0484/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_528948
 2020-05-10 2020-09-09
 Italy hCoV-19/Italy/LOM-IZSGC-TE38819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATC1- C241T C3037T C14408Y C20030T A23403G G28703T GGG28881AAC AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_530092
 2020-05-10 2020-09-10
 Spain hCoV-19/Spain/MD-LP96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A5607T C8782T C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_542881
 2020-05-10 2020-09-23
 United States hCoV-19/USA/TX-HMH-1856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C11345T C14408T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545098
 2020-05-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-2064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G14593A A23403G G25563T G26217T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545227
 2020-05-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-2290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545230
 2020-05-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-2295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559678
 2020-05-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-48548B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3742W C14408T A17406G C18788T T19839C A23403G C25603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559692
 2020-05-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-485245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G A3003T C3037T C5730T C7231T C14408T G19542T A23403G G24328A C27925T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560350
 2020-05-10 2020-09-29
 United States hCoV-19/USA/NM-UNM-00633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6407C C14408T G18859T A23403G T24076C G27084T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568764
 2020-05-10 2020-10-02
 Kenya hCoV-19/Kenya/C5384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C8352T C14408T A23403G G28916T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

LR821939
 2020-05-10 2020-06-17
 United Kingdom NORW-EAA86
 ATTAAAG1- C1314T A4501G A9621G C9985Y G11083T C14805T T17247C G26144T GATTGATTAAACGAACATGAAAATT27378- C29171T

MT607252
 2020-05-10 2020-06-13
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_060/2020
 C241T C751T A1163T A2057G C3037T C5621T C14408T A23403G C27944T GGG28881AAC AAAAA29899-

MT607255
 2020-05-10 2020-06-13
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_059/2020
 C241T C751T A1163T A2057G C3037T C5621T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAA29886-

MT811241
 2020-05-10 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0563-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2062T C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT820131
 2020-05-10 2020-07-30
 United States SARS-CoV-2/human/USA/SV107V1/2020
 C241T C3037T C10833T A12967G C13335T C14408T A15189G G19300T C22498T A23403G C29002T

EPI_ISL_417008
 2020-05-11 2020-03-23
 Belgium hCoV-19/Belgium/ULG-3662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3859G G11083T C14805T T17247C C22323T G26144T A29598G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_447904 MT509958
 2020-05-11 2020-05-19
 Bangladesh SARS-CoV-2/human/BGD/NIB_01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C241T T627A C629A A1163T C3037T G5246T C5385T G7790T G8171A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_450787 MT509497
 2020-05-11 2020-05-22
 India SARS-CoV-2/human/IND/GBRC98/2020
 C643T G1820A C6310A C6312A C8481T G11083T C13730T C19524T G23593T C23929T C28311T G28727T

EPI_ISL_452863
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AEDB1/2020
 C241T C3037T G8612T C14408T G22706T A23403G GGG28881AAC G29705T

EPI_ISL_452866
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AEDEE/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_452867
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AEE54/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G C23533T G25429T C27411T C28887T

EPI_ISL_452877
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AFD38/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_452878
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AFD56/2020
 C241T C1059T C3037T C11916T C14408T A23403G G25563T

EPI_ISL_452879
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AFD74/2020
 C241T C1059T C3037T C11916T C14408T G16558T G17298T A23403G G25563T

EPI_ISL_452880
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0138/2020
 C241T C3037T C6070T C14408T C19140T C19374T A23403G GGG28881AAC

EPI_ISL_452881
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0147/2020
 C241T C3037T C14408T C19140T C19374T A23403G GGG28881AAC

EPI_ISL_452882
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0156/2020
 C183T C241T C3037T C14408T T15978C A23403G GGG28881AAC

EPI_ISL_452885
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B04D5/2020
 C241T A1620G C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC

EPI_ISL_452888
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B052D/2020
 C241T C3037T C6070T C14408T C19140T C19374T A23403G GGG28881AAC

EPI_ISL_452889
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B053C/2020
 C241T C313T G599A T2153A C3037T C14408T A23403G G26589C A27083G C27128T GGG28881AAC

EPI_ISL_452890
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B054B/2020
 C241T C3037T C14408T A23403G C26447T G27281T GGG28881AAC

EPI_ISL_452891
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B055A/2020
 C241T C3037T C6070T C14408T C19140T C19374T A23403G GGG28881AAC

EPI_ISL_452892
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0569/2020
 C241T C3037T C6070T C14408T C19140T C19374T A23403G GGG28881AAC

EPI_ISL_452893
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0578/2020
 C241T C3037T C14408T C19140T C19374T A23403G GGG28881AAC

EPI_ISL_452894
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0596/2020
 C241T C3037T C6070T C14408T C19140T C19374T A23403G T28078C GGG28881AAC

EPI_ISL_452895
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B05A5/2020
 C241T C3037T C6070T C14408T C19140T C19374T A23403G GGG28881AAC

EPI_ISL_452897
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B05C3/2020
 C241T C2110T C3037T C14408T A16607G A23403G GGG28881AAC

EPI_ISL_452898
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B05E1/2020
 C241T C1059T C3037T C11916T C14408T G16558T A23403G G25563T

EPI_ISL_452930
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0A3D/2020
 G1440A G2891A G3052A C4668T G11083T C20233T T21679A C21742T C22624T

EPI_ISL_452948
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0BA3/2020
 C241T C1684T C3037T C4002T G10097A C13536T C14184T C14408T G19086T C21058T A23403G C23731T G24368T T25280A GGG28881AAC G29254T

EPI_ISL_452963
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0CEC/2020
 C241T A1620G C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T C28603T GGG28881AAC

EPI_ISL_452965
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0D16/2020
 C241T C3037T G5008T C14408T A16474G A23403G GGG28881AAC

EPI_ISL_452971
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0E8C/2020
 C241T C1170T C3037T A3522G C11379T C14408T G20464T A23403G GGG28881AAC C29743T

EPI_ISL_452972
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0E9B/2020
 C241T C664T C2110T C3037T C14408T A16607G A23403G GGG28881AAC

EPI_ISL_452973
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0EAA/2020
 C241T C3037T A5829G A11730G C14408T C18877T C21614T A23403G G24197T G25563T T25732G C26735T

EPI_ISL_452974
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0EC8/2020
 C241T C3037T G8612T C14408T A23403G GGG28881AAC G29705T

EPI_ISL_452977
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0EF5/2020
 C241T C3037T G5008T C14408T A23403G GGG28881AAC

EPI_ISL_453646
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/NOTT-1112F6/2020
 A2480G C2558T C2940T A3842G G11083T C14805T G26144T

EPI_ISL_453647
 2020-05-11 2020-05-27
 United Kingdom hCoV-19/England/NOTT-111302/2020
 T221C C241T T1761C C3037T C4002T C5221T G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29781T

EPI_ISL_455106
 2020-05-11 2020-05-29
 Sweden hCoV-19/Sweden/20-51349/2020
 C241T C3037T C10450T C14408T A23403G C24865T GGG28881AAC

EPI_ISL_455974
 2020-05-11 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10186/2020
 C241T C2416T C3037T G8371T G9526T G11083T C14408T C22458T C22477T A23403G G25563T C27092T C29253T

EPI_ISL_455975
 2020-05-11 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10187/2020
 G1440A G2891A G11083T T25969C C28887T

EPI_ISL_455977
 2020-05-11 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10189/2020
 C241T C3037T C14408T C22597T A23403G C29167T

EPI_ISL_455978
 2020-05-11 2020-06-01
 Belgium hCoV-19/Belgium/ULG-10190/2020
 C241T C3037T C14408T C15324T T18495C A23403G T25468C

EPI_ISL_457249
 2020-05-11 2020-06-02
 United Kingdom hCoV-19/England/EXET-136B4B/2020
 C203T C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457358 LR821848
 2020-05-11 2020-06-02
 United Kingdom NORW-EAB92
 ATTAAAGGTTTA1- C241T C1101T C3037T G12361T C14408T A18366G A23403G A24232G G25429T G27896K

EPI_ISL_457365 LR821820
 2020-05-11 2020-06-02
 United Kingdom NORW-EAC35
 G11083T C14805T T17247C G26144T

EPI_ISL_457367 LR821886
 2020-05-11 2020-06-02
 United Kingdom NORW-EAC80
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T G3567A C14408T T23047C A23403G GGG28881AAC

EPI_ISL_457369 LR821874
 2020-05-11 2020-06-02
 United Kingdom NORW-EACCC
 ATTA1- C241T C3037T C6538T A14338G C14408T A23403G A24232G G25429T

EPI_ISL_457520 LR814008
 2020-05-11 2020-06-02
 United Kingdom NORW-EC35C
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T A11595G C14408T G22992A A23403G T27971C GGG28881AAC

EPI_ISL_457524 LR814035
 2020-05-11 2020-06-02
 United Kingdom NORW-EC41D
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3874T C11455T C13426T C14408T A20055G C21587T A21643G A23403G GGG28881AAC

EPI_ISL_457525 LR814003
 2020-05-11 2020-06-02
 United Kingdom NORW-EC42C
 AT1- C241T C313T C1348Y G1439T C3037T C14408T T17673Y C20404T A23403G G25906T G28179T GGG28881AAC

EPI_ISL_457550 LR821935
 2020-05-11 2020-06-02
 United Kingdom NORW-EC6BD
 ATTA1- C241T C3037T G6532T G10262A G12131A C14408T T19839C C22995T A23403G G25471C A27669G GGG28881AAC

EPI_ISL_457552 LR821881
 2020-05-11 2020-06-02
 United Kingdom NORW-EC6EA
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_457553 LR821896
 2020-05-11 2020-06-02
 United Kingdom NORW-EC6F9
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_457555 LR814027
 2020-05-11 2020-06-02
 United Kingdom NORW-EC714
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C7528Y C13862T C14408T T19330C A23403G C28836T

EPI_ISL_457558 LR821826
 2020-05-11 2020-06-02
 United Kingdom NORW-EC750
 C241T C3037T C10626T C14408T A23403G G28077T GGG28881AAC

EPI_ISL_457559 LR814163
 2020-05-11 2020-06-02
 United Kingdom NORW-EC76F
 ATTA1- C241T C3037T C4990T C13862T C14408T T19330C A23403G C28836T

EPI_ISL_457560 LR821879
 2020-05-11 2020-06-02
 United Kingdom NORW-EC77E
 C241T C3037T C10626T C14408T A23403G G28077T GGG28881AAC

EPI_ISL_457561 LR821865
 2020-05-11 2020-06-02
 United Kingdom NORW-EC78D
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C22987T A23403G C25728T GGG28881AAC

EPI_ISL_458045
 2020-05-11 2020-06-03
 India hCoV-19/India/CCMB_L1017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4354A C6573T C12439T C14408T G17722T A21550C G23120T A23403G G25314T C25528T G25906T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458046
 2020-05-11 2020-06-03
 India hCoV-19/India/CCMB_L1021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4354A C6573T C12439T C14408T AA21550CT G23120T A23403G G25314T C25528T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458047
 2020-05-11 2020-06-03
 India hCoV-19/India/CCMB_L1022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4354A C6573T C14408T A14964G G23120T A23403G G25314T C25528T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458048
 2020-05-11 2020-06-03
 India hCoV-19/India/CCMB_L1024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4354A C6573T C12439T C14408T AA21550CT G23120T A23403G G25314T C25528T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458049
 2020-05-11 2020-06-03
 India hCoV-19/India/CCMB_L1025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A5289G C6573T G23120T A23403G G25314T C25528T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458050
 2020-05-11 2020-06-03
 India hCoV-19/India/CCMB_L1026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4354A C6573T C12439T C14408T G17722T AA21550CT G23120T A23403G G25314T C25528T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458064
 2020-05-11 2020-06-03
 India hCoV-19/India/CCMB_L988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1599T C3037T A6466G A6616G A7319G C14408T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458065
 2020-05-11 2020-06-03
 India hCoV-19/India/CCMB_L989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G1599T C3037T A6466G A6616G A7319G C14408T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458133
 2020-05-11 2020-06-03
 Bangladesh hCoV-19/Bangladesh/NIB_BCSIR_02/2020
 ATTAAAGGTTTATACC1- CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_459941
 2020-05-11 2020-06-05
 India hCoV-19/India/MaxCov0039_CSIR-IGIB/2020
 C1707Y C6310M C6312A G11083T G12685K T13650K C13730T C19317A C19382A C20081M C20089M A20142W G20342K C21370Y C23929T T24622Y T27618C C28311T G28985K

EPI_ISL_460040
 2020-05-11 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20502/2020
 C241T C3037T C14408T T22690C A23403G C25665Y G28325T

EPI_ISL_461366
 2020-05-11 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9924T G11596T C13011T C14408T G20568A A23403G A26530G G27877T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461367
 2020-05-11 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATG518- C3037T C8964T C9430T C11960A C14408T C18788T A23403G C24372T A24862G G28326T C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461793
 2020-05-11 2020-06-06
 United Kingdom hCoV-19/England/NORT-28597F/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_461801
 2020-05-11 2020-06-06
 United Kingdom hCoV-19/England/NORT-28C170/2020
 C241T C3037T G13379A C14408T C14932T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_462003
 2020-05-11 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C1ED4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C5178T G10097A C13536T C14408T A23403G C23731T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462039
 2020-05-11 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C9610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3722G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462043
 2020-05-11 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C9F9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462888
 2020-05-11 2020-06-08
 United States hCoV-19/USA/MN-MDH-1043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A19283C A23403G G25563T C26645T C27145T C27964T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_462889
 2020-05-11 2020-06-08
 United States hCoV-19/USA/MN-MDH-1044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_462890
 2020-05-11 2020-06-08
 United States hCoV-19/USA/MN-MDH-1045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C26645T C27964T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_462991
 2020-05-11 2020-06-08
 United States hCoV-19/USA/SC-DHEC-0002/2020
 -2AA T490A C3177T C6525T C8956T G15732T T18736C G23612A C24034T G25981T G26526T T26729C G28077C T28144C A29700G TA29760-

EPI_ISL_463029
 2020-05-11 2020-06-09
 India hCoV-19/India/ILSCV14262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C12116T G22468T G26730T T28144C G28878A TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_463036
 2020-05-11 2020-06-09
 India hCoV-19/India/ILSCV15547/2020
 A1- C241T C313T C1938T C3037T C5700A C9693T C10815T C14408T C16626T A23403G GGG28881AAC G29474T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_463037
 2020-05-11 2020-06-09
 India hCoV-19/India/ILSCV15552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C1938T C3037T C5700A C9693T C10815T C14408T C16626T G20033T A23403G GGG28881AAC G29474T TGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29691-

EPI_ISL_463038
 2020-05-11 2020-06-09
 India hCoV-19/India/ILSCV15907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C1281T T4660C C6312A A10978G G11083T C13730T C23929T C28311T ACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29768-

EPI_ISL_463039
 2020-05-11 2020-06-09
 India hCoV-19/India/ILSCV15917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G22468A A23403G G28221T CAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29686-

EPI_ISL_463054
 2020-05-11 2020-06-09
 India hCoV-19/India/ILSCV16809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8917T G9389A C14408T A23403G GGG28881AAC TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_463121 MT609584
 2020-05-11 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0354/2020
 ATTA1- C241T C2416T C3037T G4523A G9601T C10712T C14408T A23403G G25563T

EPI_ISL_463131 MT609594
 2020-05-11 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0375/2020
 ATTAAAG1- C241T C1059T C3037T T3655C C11916T C14408T C18998T C20823T A23403G G25563T G25947C G29540A C29870A

EPI_ISL_468465 MT628193
 2020-05-11 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1519/2020
 AT1- C241T C379A C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_468466 MT628194
 2020-05-11 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1520/2020
 AT1- C241T C379A C1059T C3037T C14408T A23403G G25563T C26456T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468467 MT628195
 2020-05-11 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C379A C1059T C3037T C4327T G4960K C14408T A23403G G25563T

EPI_ISL_468490 MT628214
 2020-05-11 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1545/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_468491 MT628215
 2020-05-11 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1546/2020
 C241T C379A C1059T C3037T G6254T C14408T A23403G G25563T

EPI_ISL_468492 MT628216
 2020-05-11 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1547/2020
 A1- C241T C379A C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468493 MT628217
 2020-05-11 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1549/2020
 C241T C379A C1059T C3037T G4399K C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469066
 2020-05-11 2020-06-17
 Sweden hCoV-19/Sweden/20-51350/2020
 C241T C3037T C10450T C14408T A23403G C24865T GGG28881AAC

EPI_ISL_469294
 2020-05-11 2020-06-18
 Japan hCoV-19/Japan/Donner36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C313T C3037T G4300T A10895G C10969T G11083T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469345
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BFD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5392T C14408T A23403G G24959T GGG28881AAC C29013T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469349
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C10A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T A11474R C14408T C20233T A23403G G25563T G26520K G28077T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469360
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BFE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469373
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C3B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T C4073Y G10097A C14408T G15672K C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469377
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C3C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6732C G10097A C10369T C14408T A23403G C23731T A25787R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469380
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_469396
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C1FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6308C G11071T G11083T C14408T T19839C A23403G C26078T C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469403
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469410
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C28F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C350T C3037T G7798T C12786T C14408T A20268G C21639G C22281T G22992A A23403G C27577T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469412
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A135G G219T C241T C350T C3037T G7798T C12786T C14408T A20268G C21639G C22281T G22992A A23403G C27577T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469417
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C38C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469420
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C43E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469421
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C350T C3037T G7798T C12786T C14408T A20268G C21639S C22281T G22992A A23403G C27577T C27889Y C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469434
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C3AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469445
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C2BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C350T C3037T G7798T C12786T C14408T A20268G C21639G C22281T G22992A A23403G C27577T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469459
 2020-05-11 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C29E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C350T C3037T G7798T C12786T C14408T A20268G A20465R C21639G C22281Y G22992A A23403G C27577T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471844
 2020-05-11 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20823/2020
 C241T T1847C T3011C C3037T C14408T G22205T A23403G T27869C T28853G G29755T

EPI_ISL_472022
 2020-05-11 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F8C2/2020
 C1218T C10702T G27806T G29711T

EPI_ISL_472801
 2020-05-11 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E275/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_472870
 2020-05-11 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15FEF8/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T221C C241T C3037T C3634T C14408T A23403G G25726T GGG28881AAC

EPI_ISL_473031
 2020-05-11 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160C36/2020
 AT1- T221C C241T C3037T C3634T C6445T C14408T A23403G G25726T GGG28881AAC

EPI_ISL_473286
 2020-05-11 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163398/2020
 C241T C3037T C14408T C14741T A23403G

EPI_ISL_473329
 2020-05-11 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F794/2020
 C241T C3037T G10097A C10332T C14408T A23403G C23731T G26439T G28580T GGG28881AAC

EPI_ISL_473330
 2020-05-11 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F7A3/2020
 C241T C1909T C3037T G10097A C14408T C22311A A23403G C23731T G25690T G28580T GGG28881AAC

EPI_ISL_473331
 2020-05-11 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F7B2/2020
 C241T C1221T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_473666
 2020-05-11 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2189A C3037T C14408T G15444T T18260C A23403G GGG28881AAC G29134T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473799
 2020-05-11 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4928/2020
 C241T C3037T C4890T C6472T C7815T G9526T C14408T A20268G A23403G

EPI_ISL_473998
 2020-05-11 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1637E7/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_474080
 2020-05-11 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163D9A/2020
 AT1- C241T C829T C1059T C3037T C14408T A23403G G25563T G27415A G28371T

EPI_ISL_474152
 2020-05-11 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16428B/2020
 ATTA1- C241T C1059T C3037T G7675T C10376T G11083T C14408T G18318T G18583T T21745C A23403G G24368T G25563T C27610T G28302C G29773T

EPI_ISL_475543
 2020-05-11 2020-06-23
 Sweden hCoV-19/Sweden/20-51351/2020
 C241T C3037T C10450T C14408T A23403G C24865T GGG28881AAC

EPI_ISL_475726 MT653097
 2020-05-11 2020-06-22
 United States SARS-CoV-2/human/USA/UT-04032/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T A23403G C26078T

EPI_ISL_475730 MT653094
 2020-05-11 2020-06-22
 United States SARS-CoV-2/human/USA/UT-03874/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T A23403G G25563T G29702A

EPI_ISL_476026
 2020-05-11 2020-06-25
 Morocco hCoV-19/Morocco/AZ183/2020
 ATTA1- C241T C3037T G4510T -11528T C14408T G15575T C15924T A23403G C25665T C28290A T28488C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476854
 2020-05-11 2020-06-26
 India hCoV-19/India/DRDE_3302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C3037T C3737T G4866T A6748G T8022K T8242K C10367Y C12008Y C14408T C14425A T21890C G23311T A23403G T24491Y A25271R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477006
 2020-05-11 2020-06-27
 Belgium hCoV-19/Belgium/rega-0511429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T2083C C3037T A9848G C9891T C14408T C17004T C21855T A23403G G25563T G29528A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477285
 2020-05-11 2020-06-29
 United States hCoV-19/USA/MN-MDH-1195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_477286
 2020-05-11 2020-06-29
 United States hCoV-19/USA/MN-MDH-1196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_478186
 2020-05-11 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T CA12885TG C14408T A20268G A23403G G25218T C26873T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478188
 2020-05-11 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G C20946T A23403G C24718T GG26466TC C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478190
 2020-05-11 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1076T C3037T C9598T C10582T C14408T G19009T G22309A C22388T G22899T A23403G G25563T C26461T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478206
 2020-05-11 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4756C C10029T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478207
 2020-05-11 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2755T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478208
 2020-05-11 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C12915T C14408T A20268G A23403G G27987T C28775T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478209
 2020-05-11 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478210
 2020-05-11 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1495T C3037T G6461T C12915T C14120T C14408T A20268G G21786T A23403G G27987T C28775T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479236
 2020-05-11 2020-06-30
 United Kingdom hCoV-19/England/SHEF-C9926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T14466C G21593A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479270
 2020-05-11 2020-06-30
 United Kingdom hCoV-19/England/SHEF-D03B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C11750T C13381T C14408T A23403G C23731T A23992T C25350T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479344
 2020-05-11 2020-06-30
 United Kingdom hCoV-19/Wales/PHWC-164AB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1589R C3037T C14408T G16935T C18512Y A23403G G25429T A27648G G29474T

EPI_ISL_479442
 2020-05-11 2020-06-30
 United Kingdom hCoV-19/Wales/PHWC-16528A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C999Y C3037T T5465C T6025C G10255T C14408T G21624T A23403G G24102A GGG28881AAC

EPI_ISL_479526
 2020-05-11 2020-06-30
 India hCoV-19/India/NIV-27109/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480308
 2020-05-11 2020-07-01
 Bulgaria hCoV-19/Bulgaria/37/2020
 C241T C3037T C8208T C14408T C19488T A23403G C28500T GGG28881AAC G29254A

EPI_ISL_481536
 2020-05-11 2020-07-03
 Finland hCoV-19/Finland/11May41S7/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481537
 2020-05-11 2020-07-03
 Finland hCoV-19/Finland/11May91S10/2020
 C241T C1059T C3037T C13335T C14408T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482421
 2020-05-11 2020-07-03
 United States hCoV-19/USA/OR-PROV-170/2020
 C241T C1059T C3037T C14408T C18086T A23403G G25563T A26528T A28492T

EPI_ISL_482422
 2020-05-11 2020-07-03
 United States hCoV-19/USA/OR-PROV-171/2020
 C241T C3037T C14408T A20268G A23403G C29370G

EPI_ISL_482423
 2020-05-11 2020-07-03
 United States hCoV-19/USA/OR-PROV-173/2020
 C241T C3037T C14408T C15952T G20980A A23403G

EPI_ISL_482766
 2020-05-11 2020-07-06
 Egypt hCoV-19/Egypt/MASRI-015/2020
 T25A C241T C3037T C8480T C12513T C14408T C18877T C22444T C23127T A23403G G25563T C26735T C28269T C28854T A28900C

EPI_ISL_482770
 2020-05-11 2020-07-06
 Egypt hCoV-19/Egypt/MASRI-024/2020
 T25A C241T C3037T C3903T C14408T A23403G T24583C G25563T C28849T T29848A

EPI_ISL_483019
 2020-05-11 2020-07-06
 United States hCoV-19/USA/UT-04004/2020
 AT1- C241T C3037T G3518T C13536T C14408T T19541C A23403G C28854T T29672C

EPI_ISL_483218
 2020-05-11 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0552-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G11243T C14408T A20268G A23403G T24076C G25654T C28854T

EPI_ISL_483222
 2020-05-11 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0558-IPL/2020
 C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483584
 2020-05-11 2020-07-08
 Singapore hCoV-19/Singapore/561/2020
 ATTA1- T5377C C6310A C6312A C8814T G11083T C13730T G16677A C19524T C23929T G27459T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483607
 2020-05-11 2020-07-08
 Singapore hCoV-19/Singapore/584/2020
 ATT1- C6310A C6312A G11083T C13730T C18946T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_484320
 2020-05-11 2020-07-08
 United Kingdom hCoV-19/England/NORT-29EFCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484462
 2020-05-11 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C623D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17747T C18463T A23403G C25603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484682
 2020-05-11 2020-07-08
 United Kingdom hCoV-19/Scotland/EDB6607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C13968T C14189T C14408T C17690T C18877T A23403G T24923C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484699
 2020-05-11 2020-07-08
 Belgium hCoV-19/Belgium/ULG-10210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T G12191T C14408T T15366C T16479C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486279 MT750453
 2020-05-11 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C3037T C3540T A4636R C6449T G12268T C14408T T14476C A20268G A22904V A23122R A23403G C25207Y T25902W T25908W G25913S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487110
 2020-05-11 2020-07-13
 Nigeria hCoV-19/Nigeria/OS524-CV45/2020
 ATTAAA1- C241T C1594T C3037T C11109T C14408T G16741T C23127T A23403G G25563T C25721T

EPI_ISL_488067
 2020-05-11 2020-07-14
 United Kingdom hCoV-19/England/NORT-29EAF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C340T C3037T G11335T C14408T T23047Y A23403G C25350T G26690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488095
 2020-05-11 2020-07-14
 United Kingdom hCoV-19/England/NORT-29EA43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A3928G C6696T C10854T C11001T T28130Y G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488103
 2020-05-11 2020-07-14
 United Kingdom hCoV-19/England/NORT-29EABC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174C C241T C3037T G10097A T13216G C14408T C17119T A19960G C22530T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488856
 2020-05-11 2020-07-14
 United Kingdom hCoV-19/England/WSFT-25C1A5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3263G C9474T C14408T C21691T A23403G C25047T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489072
 2020-05-11 2020-07-14
 United Kingdom hCoV-19/England/NORT-2923BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G529T C3037T G8042A G10097A G10642T C14408T C16616T A23403G C23731T C25714T G28580T GGG28881AAC G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489078
 2020-05-11 2020-07-14
 United Kingdom hCoV-19/England/NORT-2924E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4755T C7600T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489119
 2020-05-11 2020-07-14
 United Kingdom hCoV-19/England/NORT-291C95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8042A G10097A G10642T C14408T C16616T A23403G C23731T C25714T G28580T GGG28881AAC G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489126
 2020-05-11 2020-07-14
 United Kingdom hCoV-19/England/NORT-2923AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C2306T C3037T A14061G C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489128
 2020-05-11 2020-07-14
 United Kingdom hCoV-19/England/NORT-291CD1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4693C C9592T G10097A C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489154
 2020-05-11 2020-07-14
 United Kingdom hCoV-19/England/NORT-292511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15225C T15366C A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489310
 2020-05-11 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-10195E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C14471A C17004T A23403G G23405T G23501T C28657T GGG28881AAC G29516C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489332
 2020-05-11 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-101806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5365T C8334T T9037C C11514T C14408T G22014T C23185T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490208
 2020-05-11 2020-07-15
 Germany hCoV-19/Germany/MGZ-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C21648T A23403G C27297T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490482
 2020-05-11 2020-07-15
 United Kingdom hCoV-19/England/NORT-29ECF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T C7926T A10323G C14408T A14671C C17550T C19961T A23403G C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490485
 2020-05-11 2020-07-15
 United Kingdom hCoV-19/England/NORT-29EDD1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490487
 2020-05-11 2020-07-15
 United Kingdom hCoV-19/England/NORT-29EF26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27879T GGG28881AAC C29743T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492930
 2020-05-11 2020-07-20
 United Kingdom hCoV-19/England/NORT-28BFC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635Y C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492944
 2020-05-11 2020-07-20
 United Kingdom hCoV-19/England/NORT-28C055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T C14408T G22093A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492975
 2020-05-11 2020-07-20
 United Kingdom hCoV-19/England/NORT-28C028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C17463T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493453
 2020-05-11 2020-07-21
 United Kingdom hCoV-19/England/NORT-285A5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T C14408T G22093A A23403G C25844T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493539
 2020-05-11 2020-07-21
 United Kingdom hCoV-19/England/NORT-29EE29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10790T C14408T C17463T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493540
 2020-05-11 2020-07-21
 United Kingdom hCoV-19/England/NORT-29EE56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C4158T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494471
 2020-05-11 2020-07-21
 United States hCoV-19/USA/CA-ALSR-1273/2020
 C241T C3037T C7768T C11575T C14408T C17285T A20268G A23403G G24815A C27196T C28854T

EPI_ISL_494636
 2020-05-11 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C24588T C28854T C29118T

EPI_ISL_494644
 2020-05-11 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T AAGTCATTT686- C1059T C3037T A5843G T7919G C8772T C14408T G17014T C18788T A23403G G25563T

EPI_ISL_494650
 2020-05-11 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1537/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T G17014T C22858T A23403G G25563T C29762T

EPI_ISL_494652
 2020-05-11 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T AAGTCATTT686- C1059T C3037T A5843G T7919G C8772T C14408T G17014T C18788T A23403G G25563T

EPI_ISL_494655
 2020-05-11 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A20268G A23403G G24095T C28854T

EPI_ISL_494657
 2020-05-11 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G5555A A12124T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_494662
 2020-05-11 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1851C C3037T C7834T C14408T A20268G A23403G C28854T

EPI_ISL_495162
 2020-05-11 2020-07-22
 India hCoV-19/India/CCMB_L1023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T A4166G G4354A C6573T C12439T C14408T G23120T A23403G G25314T C25528T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_495643 MT821786
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1468/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T A12410G G12832T C14408T G19384A T19632A T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495649 MT821790
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1474/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495650 MT821793
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1475/2020
 ATTAAAGGTTT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495651 MT821795
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1476/2020
 ATTAAAG1- C241T C3037T C13418A C14408T C17678T C19881T C23086T A23403G G25062T C26625T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495652 MT821785
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1477/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495687 MT821679
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1237/2020
 AT1- C241T C3037T C14408T C15933T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495688 MT821683
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1238/2020
 AT1- G354A C2070T C8782T C17747T A17858G C18060T A26566G T28144C C29555T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495689 MT821612
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1239/2020
 AT1- C241T C3037T C14408T T19839C A23403G C23625T C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495690 MT821589
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1240/2020
 AT1- C241T C1060T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_495692 MT821698
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1242/2020
 AT1- C241T C3037T C14408T G16813A C19041T A21312G A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495693 MT821566
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1243/2020
 AT1- C241T C3037T A5538T C10733T C14408T G16813A A16872C A23403G T25783C A27914T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495694 MT821703
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1244/2020
 ATTAAAGGTTT1- G1401A C8782T G14277T G17479T C17747T A17858G C18060T G23856A T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495695 MT821692
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1245/2020
 ATT1- C241T C3037T C6285T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495696 MT821587
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1246/2020
 ATTAAAGGTTT1- C241T C3037T A5538T C10408T C14408T G16813A T21802C A23403G T25783C C26022T C27059T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495697 MT821680
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1247/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495698 MT821733
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1248/2020
 ATTAAAGGTTT1- C241T C3037T C6445T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495718 MT821750
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1268/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T A28591T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495719 MT821555
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1269/2020
 AT1- C241T C1059T G1736A C3037T C4455T C14408T G16912T T18813C A23403G G25563T C25731T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_495720 MT821656
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1270/2020
 ATTAAAGGTTTAT1- C241T C1059T G1736A C3037T C4455T C14408T G16912T A23403G G25563T C25731T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495721 MT821705
 2020-05-11 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1271/2020
 AT1- G1401A C1403T C8782T C17747T A17858G C18060T A19308G A27950C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_499444
 2020-05-11 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169444/2020
 ATTAAAGGT1- C21T C241T C3037T C5892T A11595G C14408T A21779R A23403G G23663T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_507186
 2020-05-11 2020-08-03
 United Kingdom hCoV-19/Scotland/EDB6686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2306T C3037T C10798A C13862T C14408T A23403G C28836T CCACGCGGAGTACGATCGAGTGT29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508013
 2020-05-11 2020-08-03
 United States hCoV-19/USA/NM-UNM-00374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A7870G C14408T A23403G G25563T A26441C C27964T C28093T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509941 MT846628
 2020-05-11 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510589
 2020-05-11 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_510603
 2020-05-11 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2265/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_512162
 2020-05-11 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T C3037T C14408T A17008G A20268G A23403G G24095T C28854T

EPI_ISL_512186
 2020-05-11 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1789/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C6706A T14361C C14408T A20268G A23403G C28854T

EPI_ISL_512191
 2020-05-11 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T C16762T A23403G G25563T C26537T T27504A

EPI_ISL_512194
 2020-05-11 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1887T C3037T G11761T C14408T G22793T A23403G G25563T

EPI_ISL_512232
 2020-05-11 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T C14408T C14818T C16762T C18029T C23260T A23403G G25563T

EPI_ISL_514131
 2020-05-11 2020-08-14
 Brazil hCoV-19/Brazil/RO-01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C14408T T22156C A23403G G25855T A26045G T27299C GGG28881AAC T29148C C29367T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_514132
 2020-05-11 2020-08-14
 Brazil hCoV-19/Brazil/RO-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C11563T C14408T A23403G T27299C GGG28881AAC T29148C GCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29773-

EPI_ISL_514133
 2020-05-11 2020-08-14
 Brazil hCoV-19/Brazil/RO-03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C14408T A23403G G25855T A26045G T27299C GGG28881AAC T29148C C29367T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_514134
 2020-05-11 2020-08-14
 Brazil hCoV-19/Brazil/RO-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C364A C3037T C14265T C14408T C15324T C16428T A23403G C23917T TTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29822-

EPI_ISL_514426 MT883501
 2020-05-11 2020-08-14
 Serbia SARS-CoV-2/human/SRB/KV52-12-05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T18471C C18877T C21707T A23403G G25563T A28910T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523182
 2020-05-11 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C10448T C11109T C14408T A23403G G25563T C27689T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523352
 2020-05-11 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2189T C3037T C4002T G10097A C13536T C14408T A23403G C23731T A28305G GGG28881AAC GGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29777-

EPI_ISL_523358
 2020-05-11 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5014G C8480T C14358T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523403
 2020-05-11 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2902T C3037T C4456T C14408T G15438T G17331T A20268G A23403G G25266T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524005
 2020-05-11 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-13482V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C96T C241T C3037T C14408T T17694C A23403G GGG28881AAC GACA29868-

EPI_ISL_525052
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C11379T C14408T C17125T T19839C A22320G A23403G G25523T G25563T C27964T T29685G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525065
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T A716G C2094T C2416T C3037T C14408T C15579T A23403G T24349C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525070
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C11379T C14408T C17125T T19839C A22320G A23403G G25523T G25563T C27964T T29685G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525076
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525077
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T G6443A C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525103
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525109
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C6541T C14408T A22320G A23403G G25563T G26217T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525110
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T A532T C3037T C5184T C5986T C14408T C23248T A23403G C26256T C29668T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525281
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G25563T C27524T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525282
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T TGGTCATGT508- C2939T C3037T T11698C C14408T A23403G G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525284
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T A532T C3037T C5184T C5986T C14408T C23248T A23403G C26256T C29668T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525292
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C1514T C3037T C6541T C11379T C14408T A22320G A23403G G25444T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525293
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T A532T C3037T C5184T C5986T C14408T C23248T A23403G C26256T C29668T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525302
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C14408T G15908A C19145T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525305
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C5884T G7936A C13487T C14408T C16887T C22858T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525309
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T A716G C2094T C2416T C3037T C14408T C15579T A23403G T24349C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525311
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1221T C2939T C3037T T11698C C14408T C17274T A23403G C23934A G26211T G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525312
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C11379T C14408T C17125T T19839C A22320G A23403G G25523T G25563T C27964T T29685G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525316
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C12774T C14408T A22320G G22349A A23403G G25244T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525319
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525320
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C5884T G7936A C9223T C13487T C14408T C16887T C22858T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525321
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C14408T G15908A A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525322
 2020-05-11 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C14408T G20275T C21575T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526259
 2020-05-11 2020-09-01
 Canada hCoV-19/Canada/ON-UHTC_0104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C2919T C3037T C14408T C16049T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526792
 2020-05-11 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0485/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G6894T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_526793
 2020-05-11 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0486/2020
 ATTAA1- A12T C241T C1059T C3037T C14408T C21057T A23403G G25563T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_526794
 2020-05-11 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0487/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_526949
 2020-05-11 2020-09-02
 Colombia hCoV-19/Colombia/109363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C2910T C3037T T4213C A6466G C14408T A22110G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527699
 2020-05-11 2020-09-04
 United States hCoV-19/USA/MN-CDC-6312/2020
 C241T C1059T C3037T C8016T A11117G C14408T A23403G G23593C G25563T G29449T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527734
 2020-05-11 2020-09-04
 United States hCoV-19/USA/MN-CDC-6573/2020
 C8782T C17747T A17858G C18060T T20273A A24694T C26461T C27881T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527893
 2020-05-11 2020-09-05
 Nigeria hCoV-19/Nigeria/OS523-CV53/2020
 ATTAAA1- C241T C1594T C3037T C11109T C14408T G16741T C23127T A23403G G25563T C25721T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_528701
 2020-05-11 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/44/2020
 C241T C3037T C5907T G5924A G9479T C14408T T21775G A23403G T27720C GGG28881AAC

EPI_ISL_528788
 2020-05-11 2020-09-09
 United Kingdom hCoV-19/England/BHRT-24B35A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222- C241T C3037T T4387C A11794G C14408T G19648A A22320G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528793
 2020-05-11 2020-09-09
 United Kingdom hCoV-19/England/BHRT-24B358B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T T8857G C12974T C14408T G16665A A23403G G25855K C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528930
 2020-05-11 2020-09-09
 United Kingdom hCoV-19/England/20202015104/2020
 ATTAAAG1- C241T C3037T C3411Y C9870T A12458R C14408T C18788T C18814T TGTA19295- G19567K A23403G C27196Y AAAAA29899-

EPI_ISL_529138
 2020-05-11 2020-09-10
 Indonesia hCoV-19/Indonesia/EJ-ITD-8402NT/2020
 AT1- C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_530093
 2020-05-11 2020-09-10
 Spain hCoV-19/Spain/MD-LP97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530124 MT994395
 2020-05-11 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2767/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C21658T A23312G A23403G G25563T G29553A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_530193 MT997715
 2020-05-11 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T C15026T A23403G G24368T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_530194 MT997716
 2020-05-11 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T T10423C C12896T C14408T A17236G A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_532143
 2020-05-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-554C9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19145T G20131T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532164
 2020-05-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-554CB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19145T G20131T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532172
 2020-05-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-55674D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532181
 2020-05-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-555BF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G A25605G G26416A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532183
 2020-05-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-555492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T C14408T TG17865YR A20268G C21707T A23403G G26199A C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532188
 2020-05-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-554D98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19145T G20131T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532190
 2020-05-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-55484C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T A810G C3037T C11518T C12138T C14408T T22057C A23403G C28087T GGG28881AAC G29543T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532199
 2020-05-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-556F45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C13329T C14408T G23282T A23403G G25644T A25657G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532205
 2020-05-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-555D97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T A7930G T11320C C14408T C14786T T18126C T22258C A23403G C25916T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532206
 2020-05-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-556C99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4320T C14408T A23403G A26927G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532216
 2020-05-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-556A35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12079A C14408T G18803A A23403G G24638T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537244
 2020-05-11 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2C9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7160T G10097A T12184C C14408T A23403G C23731T C25000T G28580T C28767T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537249
 2020-05-11 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2CCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2869G C3037T C14408T C16948T A23403G T27672C GGG28881AAC C29095T C29274T T29817C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537263
 2020-05-11 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2CBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C7772T G10097A C13536T C14408T G18686K A23403G C23731T A26334C C27513T G28321T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545076
 2020-05-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-2034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5806T C14408T C20474T A23403G A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545087
 2020-05-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-2050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545097
 2020-05-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-2063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T18231C A23403G GGG28881AAC G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545111
 2020-05-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-2082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A17013T A23403G G25563T C26600T C26625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545218
 2020-05-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-2276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3671A C8099T C14408T C17004T C21846T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545221
 2020-05-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-2279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17678T T18111C A23403G G24812T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545297
 2020-05-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-2415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19011T T20337C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559668
 2020-05-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-489214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6543T C12741T C14408T A23403G T27546C C28775T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559682
 2020-05-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-48978E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6543T C12741T C14408T A23403G T27546C C28775T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559728
 2020-05-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-461A74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T C15222T A23403G G25471T C28854T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560325
 2020-05-11 2020-09-29
 United States hCoV-19/USA/NM-UNM-00610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4546C A11201G C14408T G20275T A23403G G23868T A24129G G25563T C27679T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT568643
 2020-05-11 2020-06-04
 Bangladesh SARS-CoV-2/human/BGD/NIB-BCSIR_02/2020
 ATTAAAGGTTTATACC1- CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

MT578015
 2020-05-11 2020-06-08
 United States SARS-CoV-2/human/USA/SC-DHEC-COVID20-0002/2020
 -2AA T490A C3177T C6525T C8956T G15732T T18736C G23612A C24034T G25981T G26526T T26729C G28077C T28144C A29700G TA29760-

MT810698
 2020-05-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1273-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7768T C11575T C14408T C17285T A20268G A23403G G24815A C27196T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810839
 2020-05-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1514-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C24588T C28854T C29118T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810845
 2020-05-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1527-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- AAGTCATTT686- C1059T C3037T A5843G T7919G C8772T C14408T G17014T C18788T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810851
 2020-05-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1537-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T C22858T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810853
 2020-05-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1543-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- AAGTCATTT686- C1059T C3037T A5843G T7919G C8772T C14408T G17014T C18788T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810856
 2020-05-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1546-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G G24095T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810858
 2020-05-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1550-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G5555A A12124T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810863
 2020-05-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1566-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- T1851C C3037T C7834T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811234
 2020-05-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0552-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G11243T C14408T A20268G A23403G T24076C G25654T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811238
 2020-05-11 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0558-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT956916
 2020-05-11 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-76632092/2020
 C8782T T9477A C14805T T28144C C28657T C28863T

MT967900
 2020-05-11 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6312/2020
 C241T C1059T C3037T C8016T A11117G C14408T A23403G G23593C G25563T G29449T AAAAAAAAAAAAAAAAAAAAA29883-

MT967909
 2020-05-11 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6573/2020
 C8782T C17747T A17858G C18060T T20273A A24694T C26461T C27881T T28144C AAAAAAAAAAAAAAAAAAAAA29883-

MW001267
 2020-05-11 2020-09-14
 United States SARS-CoV-2/human/USA/256-ETA/2020
 C241T C1059T C3037T C14408T C20371T A23403G G25563T G28109T AAAAAAAAAAAAAAAAAAAAA29883-

MW031799
 2020-05-11 2020-09-23
 Pakistan SARS-CoV-2/human/PAK/Lahore-I/2020
 C241T C3037T C3096T C4002T G4180T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

MW031800
 2020-05-11 2020-09-23
 Pakistan SARS-CoV-2/human/PAK/Lahore-II/2020
 C241T C3037T C3096T C4002T G4180T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

MW031801
 2020-05-11 2020-09-23
 Pakistan SARS-CoV-2/human/PAK/Lahore-III/2020
 C241T C3037T C3096T C4002T G4180T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

MW031802
 2020-05-11 2020-09-23
 Pakistan SARS-CoV-2/human/PAK/Lahore-IV/2020
 C241T C3037T C3096T C4002T G4180T G10097A C13536T C14408T T21784A A23403G C23731T GGG28881AAC

MW031803
 2020-05-11 2020-09-23
 Pakistan SARS-CoV-2/human/PAK/Sialkot/2020
 C241T C3037T C14408T C20031T A23403G C24370T C28810T GGG28881AAC A29865G

EPI_ISL_438572
 2020-05-12 2020-05-12
 United Kingdom hCoV-19/England/CAMB-81140/2020
 C241T C3037T C9438T G10262A C14408T T19839C C22995T A23403G A27669G GGG28881AAC

EPI_ISL_438688
 2020-05-12 2020-05-12
 United Kingdom hCoV-19/England/CAMB-83D77/2020
 C241T C3037T C3373A C6354T C9344T C11195T C14408T G17140T A23403G C26509T GGG28881AAC

EPI_ISL_452926
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B09D6/2020
 C241T C3037T G8612T C14408T G22436T A23403G C28045T GGG28881AAC G29705T

EPI_ISL_452928
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0A00/2020
 C241T C3037T G8612T C14408T A23403G GGG28881AAC G29705T

EPI_ISL_452929
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0A2E/2020
 C241T C2459T C3037T C9778T C11036T C14408T A23403G G24098T G26314A A28008G GGG28881AAC

EPI_ISL_452937
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0AB5/2020
 C241T C2508T C3037T C13430T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_452949
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0BB2/2020
 C241T C3037T A5829G A11730G C14408T C18877T C21614T A23403G G24197T G25563T T25732G C26735T

EPI_ISL_452954
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0C46/2020
 C241T C313T G2424A C3037T T7672A G12243A T12811A C14396T C14408T A23403G A23572G C26607T G26840T GGG28881AAC

EPI_ISL_452956
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0C73/2020
 C241T C3037T C11653T C14408T C22286T A23403G GGG28881AAC

EPI_ISL_452957
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0C82/2020
 C241T C3037T C3666T T6715C A13947T C14408T C19488T A23403G C28674T GGG28881AAC C29769T

EPI_ISL_452958
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0C91/2020
 C241T C3037T C11653T C14408T C22286T A23403G GGG28881AAC

EPI_ISL_452959
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0CA0/2020
 C241T C3037T C11653T C14408T C22286T A23403G GGG28881AAC

EPI_ISL_452960
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0CBF/2020
 C241T C3037T C11653T C14408T C22286T A23403G GGG28881AAC

EPI_ISL_452962
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0CDD/2020
 C241T A1620G C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC

EPI_ISL_452964
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0CFB/2020
 C241T C3037T C14408T A23403G G23868T G25429T C26912T GTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTC27703-

EPI_ISL_452968
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0E5F/2020
 C241T C3037T G8612T C14408T A23403G A28762G GGG28881AAC G29705T

EPI_ISL_453649
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/NOTT-11134E/2020
 C241T C3037T G13690A C14408T C16646T G16852T A23403G C28256T GGG28881AAC

EPI_ISL_453650
 2020-05-12 2020-05-27
 United Kingdom hCoV-19/England/NOTT-11135D/2020
 C241T C3037T G13690A C14408T C16646T C17822T A23403G C28256T GGG28881AAC

EPI_ISL_454656 MT534306
 2020-05-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1236/2020
 ATTA1- T13Y G491A C8175M T10129Y A14940G T15771Y T29360K

EPI_ISL_454657 MT534307
 2020-05-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1237/2020
 A1- C9969Y A14940G C15024T

EPI_ISL_454659 MT534309
 2020-05-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1239/2020
 A1- G491A T10129Y A14940G T15771Y

EPI_ISL_454672 MT534322
 2020-05-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1252/2020
 A3138R A12557G A16824W C24904T C25916T A27359G A29877W

EPI_ISL_454675 MT534325
 2020-05-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1255/2020
 ATTAAAGGTT1- T13Y T6353Y T10129Y A12557G T15771Y C24904T C25916T A27359G T29360K C29364M

EPI_ISL_454677 MT534327
 2020-05-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1257/2020
 C1498Y T10129Y A12557G C24904T C25916T A27359G

EPI_ISL_454678 MT534328
 2020-05-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1258/2020
 AT1- G1957R T10129Y G10642K A12557G T13147Y T15771W G18583T C24904T C25916T A27359G

EPI_ISL_454680 MT534330
 2020-05-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1260/2020
 A3138G A12557G A15498T C24904T C25916T A27359G C27925A

EPI_ISL_454682 MT534332
 2020-05-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1262/2020
 ATTAAAGGTT1- T7009K C8175M T10129Y A12557G T15771Y C24904T C25916T A27359G C28887M T29360K C29364M AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_454683 MT534333
 2020-05-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1263/2020
 A12557G C24904T C25916T A27359G

EPI_ISL_454685 MT534335
 2020-05-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1265/2020
 A12557G C23506Y C24904T C25916T A27359G C29614T

EPI_ISL_454687 MT534337
 2020-05-12 2020-05-28
 United States SARS-CoV-2/human/USA/CA-CZB-1267/2020
 ATTAAAGGTTTA1- T8187Y T10129Y A12557G C24904T C25916T A27359G T29360K C29364M A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_455107
 2020-05-12 2020-05-29
 Sweden hCoV-19/Sweden/20-51387/2020
 C241T C703T C1059T C3037T C14408T T19531C A23403G G23593T G24368T G25563T G29254T C29640T C29836T

EPI_ISL_455469
 2020-05-12 2020-05-30
 Romania hCoV-19/Romania/283584/2020
 C241T C3037T C8958T C14408T A20268G A23403G T23791C C28854T C29200T C29451T

EPI_ISL_455572
 2020-05-12 2020-05-31
 United States hCoV-19/USA/WI-GMF-03156/2020
 C241T C715T C1059T C3037T T3741C T9067C C11916T C14408T A23403G A23586G G25563T

EPI_ISL_455580
 2020-05-12 2020-05-31
 United States hCoV-19/USA/WI-GMF-M00003/2020
 C241T C1059T C2189T C3037T T5403W AG6355MR C6445Y C14408T C17339Y TGTT21537YSWY G21593K C21595S A23403G C23536T G25563T

EPI_ISL_456875
 2020-05-12 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A G2599T C3037T C3411T C3885T C14408T C17104T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_456877
 2020-05-12 2020-06-02
 United Kingdom hCoV-19/Scotland/CVR3486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C5184T C12710T T25825C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_457334 LR813999
 2020-05-12 2020-06-02
 United Kingdom NORW-EA224
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A9749G C14408T G21941T A23403G A24232G G25429T G27788T

EPI_ISL_457337 LR821853
 2020-05-12 2020-06-02
 United Kingdom NORW-EA28E
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C13862T C14408T T19330C A23403G A27521R C28836T

EPI_ISL_457339 LR821872
 2020-05-12 2020-06-02
 United Kingdom NORW-EA2AC
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C13862T C14408T T19330C A23403G C28836T

EPI_ISL_457340 LR821897
 2020-05-12 2020-06-02
 United Kingdom NORW-EA303
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7417T C13862T C14408T T19330C C21513T A23403G C28836T T29377Y

EPI_ISL_457341 LR821926
 2020-05-12 2020-06-02
 United Kingdom NORW-EA38B
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C13862T C14408T T19330C A23403G C28836T

EPI_ISL_457345 LR821990
 2020-05-12 2020-06-02
 United Kingdom NORW-EA41F
 ATTAAAGGT1- C241T C3037T C13862T C14408T T19330C A23403G C28836T

EPI_ISL_457346 LR815579
 2020-05-12 2020-06-02
 United Kingdom NORW-EA42E
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- -130T C241T C3037T C12915T C14408T A20268G G21255T A23403G

EPI_ISL_457347 LR821910
 2020-05-12 2020-06-02
 United Kingdom NORW-EA46A
 ATTA1- C241T C3037T C13862T C14408T T19330C A23403G C24099Y G25996T C28836T

EPI_ISL_457521 LR814215
 2020-05-12 2020-06-02
 United Kingdom NORW-EC389
 C241T C3037T C14408T C22987T A23403G C25728T GGG28881AAC

EPI_ISL_457523 LR815574
 2020-05-12 2020-06-02
 United Kingdom NORW-EC40E
 C36Y C241T C3037T C12915T C14408T A20268G G21255T A23403G

EPI_ISL_457531 LR821822
 2020-05-12 2020-06-02
 United Kingdom NORW-EC4FF
 ATT1- C241T C3037T C14408T C22987T A23403G C25728T GGG28881AAC

EPI_ISL_457533 LR814201
 2020-05-12 2020-06-02
 United Kingdom NORW-EC529
 ATTAAAGGTTTATACCT1- C241T C3037T C3787T C3903T C14408T TTA21991- A23403G G27877T G28086T GGG28881AAC

EPI_ISL_457556 LR815575
 2020-05-12 2020-06-02
 United Kingdom NORW-EC732
 AT1- C241T C3037T C3874T C11455T C13426T C14408T A20055G C21587T A21643G A23403G G27478K GGG28881AAC

EPI_ISL_457562 LR821856
 2020-05-12 2020-06-02
 United Kingdom NORW-EC7AB
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2062T C3037T A9749G C14408T A23403G A24232G G25429T G27788T

EPI_ISL_457563 LR814166
 2020-05-12 2020-06-02
 United Kingdom NORW-EC7E7
 A1- C241T A1620G C3037T C4002T G4399T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC

EPI_ISL_457565 LR821888
 2020-05-12 2020-06-02
 United Kingdom NORW-EC802
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A9749G C14408T A23403G A24232G G25429T G27788T

EPI_ISL_458051
 2020-05-12 2020-06-03
 India hCoV-19/India/CCMB_L1062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3634T C3784T C7086T C14408T C15324T G16864A A21550C A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458052
 2020-05-12 2020-06-03
 India hCoV-19/India/CCMB_L1063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C784T C3037T C3634T C14408T C15324T A21551T A23403G G24764T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458053
 2020-05-12 2020-06-03
 India hCoV-19/India/CCMB_L1064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C3634T C14408T C15324T AA21550CT A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_459894
 2020-05-12 2020-06-04
 Luxembourg hCoV-19/Luxembourg/LNS1646752/2020
 C241T C337T C2416T C3037T G8371T G11083T C14408T G16968A A23403G A25472C G25563T A28860T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_459915
 2020-05-12 2020-06-05
 India hCoV-19/India/MaxCov0013_CSIR-IGIB/2020
 C1707Y C6310M C6312A G11083T G12685K C13730T A15435R C23929T T24622Y A27633C C28311T

EPI_ISL_459916
 2020-05-12 2020-06-05
 India hCoV-19/India/MaxCov0014_CSIR-IGIB/2020
 C241Y C313Y C1707Y C3037Y C6310M C6312M G11083K G12685K T13650K C13730T C23929Y T24622Y C28311Y G28712R GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_460583
 2020-05-12 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20535/2020
 C241T C1059T C3037T C14408T A20624R A23403G G25563T

EPI_ISL_461144
 2020-05-12 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6151A C6701T C14408T C19170T G19509A A23403G G28077T C28253T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461972
 2020-05-12 2020-06-06
 United Kingdom hCoV-19/England/PORT-2CF6AF/2020
 C241T C3037T C9857T C10189T C14408T C16887T C21292T A23403G A26530G

EPI_ISL_461973
 2020-05-12 2020-06-06
 United Kingdom hCoV-19/England/PORT-2CF6BE/2020
 C241T C3037T C9857T C14408T C16887T C19170T C21292T A23403G A26530G

EPI_ISL_461974
 2020-05-12 2020-06-06
 United Kingdom hCoV-19/England/PORT-2CF6CD/2020
 C241T C3037T C9857T C14408T C16887T C21292T A23403G A26530G

EPI_ISL_461975
 2020-05-12 2020-06-06
 United Kingdom hCoV-19/England/PORT-2CF6DC/2020
 C241T C3037T C9857T C14408T C16887T C21292T C23277T A23403G A26530G

EPI_ISL_461976
 2020-05-12 2020-06-06
 United Kingdom hCoV-19/England/PORT-2CF6EB/2020
 C241T C3037T C9857T C14408T C16887T C21292T A23403G A26530G

EPI_ISL_461977
 2020-05-12 2020-06-06
 United Kingdom hCoV-19/England/PORT-2CF715/2020
 C241T C3037T C9857T C14408T C16887T C21292T A23403G A26530G

EPI_ISL_461979
 2020-05-12 2020-06-06
 United Kingdom hCoV-19/England/PORT-2CF742/2020
 C241T C3037T C9857T C14408T C16887T C21292T A23403G A26530G

EPI_ISL_462044
 2020-05-12 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CA58B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18803T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462056
 2020-05-12 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CC8DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C11750T C13381T C14408T G21600T A23403G C23731T A23992T C25350T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_463049
 2020-05-12 2020-06-09
 India hCoV-19/India/ILSCV16509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T490C G1820A C6310A C6312A G11083T C13730T C19524T A25381C C28311T C28890G AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_463051
 2020-05-12 2020-06-09
 India hCoV-19/India/ILSCV16512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T490C C1498T G1820A C6310A C6312A G11083T C13730T C19524T C28311T TATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29789-

EPI_ISL_463052
 2020-05-12 2020-06-09
 India hCoV-19/India/ILSCV16514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C5700A C9693T C10815T C14408T C16626T A23403G GGG28881AAC G29474T TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_463056
 2020-05-12 2020-06-09
 India hCoV-19/India/ILSCV17568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C10790T C13730T C14408T C21910T G22604T A22678T A23403G G24104A C29409T TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_463122 MT609585
 2020-05-12 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0355/2020
 ATTAAAGG1- C241T C2416T C3037T G4523A G9601T C10712T A11914G C11941A C14408T A23403G G25563T G27382C AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_463123 MT609586
 2020-05-12 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0356/2020
 ATT1- C241T C2416T C3037T G4523A G9601T C10712T A11914G C11941A C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_463125 MT609588
 2020-05-12 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0364/2020
 ATT1- A12R A169T C241T C1059T C3037T C5284T C11916T C14408T C18998T A23403G T25272C G25563T G25947C C29077T G29540A

EPI_ISL_463130 MT609593
 2020-05-12 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0374/2020
 ATTA1- C241T C1059T T1117C C3037T G3509A T3655C C11916T C14408T C18998T C20823T A23403G G25563T G25947C G29540A

EPI_ISL_463132 MT609595
 2020-05-12 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0376/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C18998T C20823T A23403G G25563T G25947C G29540A AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_463133 MT609596
 2020-05-12 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0377/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C11916T C14408T C18998T C20823T A23403G G25563T G25947C G29540A C29870M

EPI_ISL_468464 MT628192
 2020-05-12 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1518/2020
 C241T C379A C1059T C3037T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469456
 2020-05-12 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C3F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2142T C3037T C14408T A15082G C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469468
 2020-05-12 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T G1821R C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469474
 2020-05-12 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C7F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5312T C9603T C14408T C21846T A23403G G25563T C27509T G27852T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469492
 2020-05-12 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C7EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5312T C9603T C14408T C21846T A23403G G25563T G27852T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469493
 2020-05-12 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6318T C6573T C10335T C14408T T16446C A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469500
 2020-05-12 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14691G G18859T T19473C G21624T T22325C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469507
 2020-05-12 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1572T A2356C C3037T G10097A C10369T C14408T A23403G C23731T C26058T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469510
 2020-05-12 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C7DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105K C7072Y C14408T A23403G GGG28881AAC C29013T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469513
 2020-05-12 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C5B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469523
 2020-05-12 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C5D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471843
 2020-05-12 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20822/2020
 C241T T1847C T3011C C3037T C14408T G22205T A23403G T27869C T28853G G29755T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_472735
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15D56E/2020
 ATTA1- C241T G1589R C3037T C14408T A23403G G25429T G27852T G29474T

EPI_ISL_472747
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15D883/2020
 ATTAAAGGTTTATACCT1- C241T C313T A2127G C3037T C14408T C17135T T18672C A23403G G26849T GGG28881AAC

EPI_ISL_472779
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15DE72/2020
 ATTAAAGGTTTA1- C241T C3037T C6582T C14408T A23403G GGG28881AAC

EPI_ISL_472790
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E06C/2020
 C241T C3037T C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_472791
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E099/2020
 A1- C241T C3037T T5573C C6380T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_472795
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E10F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T TGTTATGGT514- C829T C1059T C3037T C14408T A23403G G25563T G27415A G28371T

EPI_ISL_472812
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E3DC/2020
 A1- G189T C241T C3037T C14408T C17491T G21624T A23403G GGG28881AAC

EPI_ISL_472813
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E3EB/2020
 A1- C241T C3037T C14408T A23403G ATT27579- GGG28881AAC

EPI_ISL_472818
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E4F7/2020
 ATTA1- C241T C1059T C3037T C9803T C10376T G11083T C14408T G18583T T21745C A23403G G24368T G25563T G29773T

EPI_ISL_473332
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F7C1/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28325T G28580T GGG28881AAC

EPI_ISL_473333
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F7D0/2020
 C241T C1059T C1627T C3037T G6392A C8441A A11439G A12825G C14408T A23403G G25563T G25947T G27506T

EPI_ISL_473335
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F7FE/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29364T TACGATCGAGTGTACAGTGAACAATGC29748-

EPI_ISL_473336
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F80A/2020
 C241T C3037T C14408T A23403G A26612G GGG28881AAC

EPI_ISL_473653
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21812A C22879A A23403G G29100T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473798
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4888/2020
 C241T C3037T A8032G C14408T C18788T T19839C G20433T A23403G A24862G GGG28881AAC G29745T

EPI_ISL_473995
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1637BA/2020
 ATTA1- C241T C3037T C8626Y C14408T C14741T C22997T A23403G T24923C ATTGGAACTGTAACTTTGAAGCAAGGTGAAAT25420- G25459T

EPI_ISL_474020
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163969/2020
 A1- C241T C3037T A3911G C14408T A23403G T25272C C26028T

EPI_ISL_474036
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163A93/2020
 C241T C3037T C14408T C14741T C22997T A23403G T24923C G25459T

EPI_ISL_474048
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163B72/2020
 C241T TGTTATGGT514- C829T C1059T C3037T C14408T A23403G G25563T T25928Y G27415A G28371T

EPI_ISL_474056
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163C06/2020
 ATTA1- C100Y C241T C829T C1059T C3037T C14408T A23403G G25563T G27415A G28371T G29027K

EPI_ISL_474078
 2020-05-12 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163D7C/2020
 AT1- C241T C3037T A3911G C14408T A23403G T25272C C26028T

EPI_ISL_475515
 2020-05-12 2020-06-23
 Sweden hCoV-19/Sweden/20-14509/2020
 C241T G1394A C3037T C14408T A23403G G23856T GGG28881AAC G29473A

EPI_ISL_476844
 2020-05-12 2020-06-26
 India hCoV-19/India/DRDE4001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C3037T C3634T T8022K C14408T C15324T C22096T A22395R A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477287
 2020-05-12 2020-06-29
 United States hCoV-19/USA/MN-MDH-1197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C3737T C14408T A23403G G25494T G25563T A26183G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_478192
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478193
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478194
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478211
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478212
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7814C C14408T G18213T A18818G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478213
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478214
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5392T T7814C C14408T G18213T A18818G A23403G G25563T C26228T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478215
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1495T C3037T G6461T C12915T C14120T C14408T A20268G G21786T A23403G G27987T C28775T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478216
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C10798A C13862T C14408T C22712T A23403G T27063C C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478217
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C12915T C14120T C14408T A20268G A23403G G27987T C28775T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478218
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478221
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478224
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7814C C14408T G18213T A18818G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478225
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7814C C14408T G18213T A18818G A21137G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478226
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478227
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478254
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9642G G10097A C14408T A23403G C23731T C25714T C25936T G28580T C28849T GGG28881AAC C29274T T29775C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478262
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478263
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9642G G10097A C14408T A23403G C23731T C25714T C25936T G28580T C28849T GGG28881AAC C29274T T29775C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478265
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T967C G970A C3037T C14408T A20268G G22225T A23403G G25599T T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478266
 2020-05-12 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9642G G10097A C10556T C14408T A23403G C23731T C25714T C25936T G28580T C28849T GGG28881AAC C29274T T29775C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479527
 2020-05-12 2020-06-30
 India hCoV-19/India/NIV-28147/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C3117T C3634T T13387C C14408T C14676T C15324T C20233T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479528
 2020-05-12 2020-06-30
 India hCoV-19/India/NIV-28416/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T C14768T C17573T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_482424
 2020-05-12 2020-07-03
 United States hCoV-19/USA/OR-PROV-174/2020
 C241T C1059T C3037T A10323G C14408T A23403G G25563T A29700G

EPI_ISL_482425
 2020-05-12 2020-07-03
 United States hCoV-19/USA/OR-PROV-175/2020
 C241T G353A C1059T C3037T C5672T C11916T C14408T G22331A A23403G G25563T G27506T G28027T G28209T G28727T G29742T

EPI_ISL_482426
 2020-05-12 2020-07-03
 United States hCoV-19/USA/OR-PROV-176/2020
 C241T C1059T C3037T C6027T T8421C C14408T A23403G G25563T

EPI_ISL_483029
 2020-05-12 2020-07-06
 United States hCoV-19/USA/UT-04112/2020
 C241T C959T C1059T C3037T G10947A C14408T C15352T C21364T A23403G C24378T G25563T TTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACAC27701- C27964T C29095T C29870M

EPI_ISL_483226
 2020-05-12 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0565-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10277T C14408T A23403G C23638T T26960C G28079T GGG28881AAC

EPI_ISL_483228
 2020-05-12 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0567-IPL/2020
 ATTAAAGGTTTA1- C241T C3037T C3551T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483231
 2020-05-12 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0571-IPL/2020
 ATTA1- C241T C3037T G6367T G11083T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_484321
 2020-05-12 2020-07-08
 United Kingdom hCoV-19/England/NORT-29F0AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T T13096C C14408T G21220T A23403G C23731T G28195A T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484323
 2020-05-12 2020-07-08
 United Kingdom hCoV-19/England/NORT-29F1C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484324
 2020-05-12 2020-07-08
 United Kingdom hCoV-19/England/NORT-29F1D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C12774T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484681
 2020-05-12 2020-07-08
 United Kingdom hCoV-19/Scotland/EDB6604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C13968T C14189T C14408T C17690T C18877T A23403G T24923C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486281
 2020-05-12 2020-07-10
 United States hCoV-19/USA/CA-CZB-2035/2020
 ATTA1- A30R C241T C337T C379A C1059T C3037T G6036T C14408T A23403G G25563T G26951K

EPI_ISL_487246 MT764166
 2020-05-12 2020-07-13
 United States SARS-CoV-2/human/USA/UT-04115/2020
 A1- C241T C2939T C3037T G3880A T11698C G12395A C14408T G16935T A23403G A29598G

EPI_ISL_488111
 2020-05-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-29F189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C3037T C8334T A10194C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488115
 2020-05-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-29EADA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2854G C3037T G5716T A6393G C8772T C14408T G16014T A23403G T24799C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488134
 2020-05-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-29EC5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C12774T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488854
 2020-05-12 2020-07-14
 United Kingdom hCoV-19/England/WSFT-25C17A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3263G C9474T C14408T C21691T A23403G C25047T G28451T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489097
 2020-05-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-292669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6306T C14408T A20268G C21707T A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489101
 2020-05-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-29264B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2583T C3037T C9430T G10097A C14408T C17012T C23127Y A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489108
 2020-05-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-29260F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G C21707T A23403G C26447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489127
 2020-05-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-2925E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174C C241T C3037T G10097A T13216G C14408T C17119T A19960G C22530T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489155
 2020-05-12 2020-07-14
 United Kingdom hCoV-19/England/NORT-2925F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174C C241T C3037T G10097A T13216G C14408T C17119T A19960G C22530T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489242
 2020-05-12 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-101815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC G29745C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489301
 2020-05-12 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-101B76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G713T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489892 EPI_ISL_491088
 2020-05-12 2020-07-14
 Romania hCoV-19/Romania/ROSV_7981/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C147T C241T C3037T T9697C C14408T C19602T A20268G A23403G A29827T G29830T T29832- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837T

EPI_ISL_490473
 2020-05-12 2020-07-15
 United Kingdom hCoV-19/England/NORT-29EAE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24390T C27513T T27534C G27651A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490694
 2020-05-12 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR3506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G19542T G20679A A23403G T27576G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491969
 2020-05-12 2020-07-18
 Oman hCoV-19/Oman/205035503/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T G10265A C14408T C16293T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491970
 2020-05-12 2020-07-18
 Oman hCoV-19/Oman/205035515/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G1944A C3037T G10265A C14408T C16293T G16813T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_492843
 2020-05-12 2020-07-20
 United Kingdom hCoV-19/England/LOND-124C3CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- TTA516- T1368C C6990T G11083T C14724T C14805T C19952T A22941C C23707T G26144T G26196T C26681T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492952
 2020-05-12 2020-07-20
 United Kingdom hCoV-19/England/NORT-28C240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493454
 2020-05-12 2020-07-21
 United Kingdom hCoV-19/England/NORT-285AB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493534
 2020-05-12 2020-07-21
 United Kingdom hCoV-19/England/NORT-29E982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4223T C8947T C14408T A23403G G27147T G27750T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493535
 2020-05-12 2020-07-21
 United Kingdom hCoV-19/England/NORT-29EBC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493694
 2020-05-12 2020-07-21
 United Kingdom hCoV-19/England/SHEF-CA406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493703
 2020-05-12 2020-07-21
 United Kingdom hCoV-19/England/SHEF-CB7A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T A5914G G6622T G10097A C13536T C14408T A23403G C23731T C26885T C28512T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493704
 2020-05-12 2020-07-21
 United Kingdom hCoV-19/England/SHEF-CBFB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T TTGGAAATG3836- T7438C G10097A C14408T A23403G C23731T C26028T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494635
 2020-05-12 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1513/2020
 ATTAAAGGTTT1- C241T C1457T C3037T C14408T A20268G C21058T A23403G T24076C C28854T

EPI_ISL_494642
 2020-05-12 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1870T C3037T C3159T C7011T C14408T G18677T G19072T A20268G C22388T A23403G C25889T C28854T A29723G

EPI_ISL_494660
 2020-05-12 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G T24076C G27506T C28854T G29841T

EPI_ISL_495648 MT821787
 2020-05-12 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1473/2020
 ATTAAAGGTTTAT1- C241T C379A C1059T C3037T G6036A C11208T C14408T A23403G G25456T G25563T C26333T A27521G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495723
 2020-05-12 2020-07-23
 United States hCoV-19/USA/WA-S1273/2020
 AT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495725 MT821601
 2020-05-12 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1275/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495726 MT821586
 2020-05-12 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1276/2020
 ATTAAAGGTTTAT1- C241T C3037T G11083T C14408T C17850T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495728 MT821616
 2020-05-12 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1278/2020
 AT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_495729 MT821570
 2020-05-12 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1279/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C8782T C14408T C16376T C18877T A23403G G25563T G25907T A28458T C28854T C29451T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495730 MT821763
 2020-05-12 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1280/2020
 AT1- C241T A2161G C3037T G11417T C14408T C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495731 MT821642
 2020-05-12 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1281/2020
 ATTAAAGGTTTATA1- C241T A2161G C3037T G11417T C14408T C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495732 MT821759
 2020-05-12 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1282/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495733 MT821581
 2020-05-12 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1283/2020
 A1- C241T C3037T A4197G C14408T G16813A A23403G T25783C C26177T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_495734 MT821608
 2020-05-12 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1284/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29144T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495735 MT821767
 2020-05-12 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1285/2020
 A1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495736 MT821629
 2020-05-12 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1286/2020
 A1- C241T C3037T C12880T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495756 MT821671
 2020-05-12 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1306/2020
 ATTAAAGGTTTAT1- G1401A C7948T C8782T C17747T A17858G C18060T A19308G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_500703
 2020-05-12 2020-07-29
 Australia hCoV-19/Australia/NSW2292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6632A C14408T C18877T A23403G G25563T C26735T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_507185
 2020-05-12 2020-08-03
 United Kingdom hCoV-19/Scotland/EDB6684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T T15669C C18904T A23403G G25606T T27499C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507261
 2020-05-12 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15221S/2020
 AT1- C241T C3037T C14408T A16775G A23403G GGG28881AAC T29455C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507262
 2020-05-12 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15228S/2020
 ATTA1- C241T C3037T C5506A G13309A C14408T A20268G A23403G G29773T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507263
 2020-05-12 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15229S/2020
 ATT1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507264
 2020-05-12 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15231S/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A23403G GGG28881AAC G28916A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_508314
 2020-05-12 2020-08-04
 India hCoV-19/India/IB35/2020
 ATTAAAGGTTTA1- TGGTCATGTTATGGT508- C6312A G11083T C13730T T16732G C23929T G26211T C28311T G29868A

EPI_ISL_508388
 2020-05-12 2020-08-04
 India hCoV-19/India/IK64/2020
 A1- C241T A1350T C3037T G7873A C11866T C14408T A23403G G29868A

EPI_ISL_508389
 2020-05-12 2020-08-04
 India hCoV-19/India/IK65/2020
 ATTA1- C241T C3037T A7859G G14055T C14408T A23403G G24770T G28221T G29868A

EPI_ISL_508390
 2020-05-12 2020-08-04
 India hCoV-19/India/IK66/2020
 A1- A4G AT12TA CC15- G4160T C7945T C8782T G16827A G22468T A24118G T28144C G28878A G28936T G29645T G29742A ATC29752- GTACAGTGAA29759- G29868A

EPI_ISL_508391
 2020-05-12 2020-08-04
 India hCoV-19/India/IK67/2020
 A4- C241T G1772A C3037T C8127T G8863A G9817A C12141A C14408T G15451A G22199T G22343A A23403G T25766C G29868A

EPI_ISL_508506
 2020-05-12 2020-08-04
 India hCoV-19/India/TF41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1947C C3037T C14408T G17331T C18877T C22444T A23403G G25563T C26735T C28139T C28854T C29675T G29862T G29868A

EPI_ISL_509130
 2020-05-12 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T A23403G G25563T C25824T TTCT25929AAAC C27964T

EPI_ISL_509424
 2020-05-12 2020-08-05
 United States hCoV-19/USA/AL-P44e/2020
 C241T C1059T C3037T C7420A C10319T C12073T C14408T C16289T G20679T A23403G G25563T G27670T C27964T

EPI_ISL_509425
 2020-05-12 2020-08-05
 United States hCoV-19/USA/AL-SV100V1/2020
 C241T C1059T C3037T C7420A C10319T C12073T C14408T C16289T G20679T A23403G G25563T G27670T C27964T

EPI_ISL_509686
 2020-05-12 2020-08-05
 United States hCoV-19/USA/MN-MDH-1385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C225T C884T G1397A C7979T G8653T T9959Y C11074T G11083T A19073G C21707T A22486G C25708T C26895T G27915T T28688C C28868T C29077T G29742T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509836 MT846520
 2020-05-12 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1009T C3037T C6861T C14408T C19170T G19509A G20616T G22299A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509837 MT846521
 2020-05-12 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4403A C4940A C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509940 MT846627
 2020-05-12 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510590
 2020-05-12 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2252/2020
 ATTAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510591
 2020-05-12 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2253/2020
 ATTAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510592
 2020-05-12 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2254/2020
 ATTA1- C241T C1059T C3037T A10323G C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510593
 2020-05-12 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2255/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510594
 2020-05-12 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2256/2020
 A1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510595
 2020-05-12 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2257/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_510596
 2020-05-12 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T C21658T A23403G G25563T G29179T G29779T

EPI_ISL_510597
 2020-05-12 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2259/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510598
 2020-05-12 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2260/2020
 C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510599
 2020-05-12 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2261/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510600
 2020-05-12 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2262/2020
 A1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510601
 2020-05-12 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2263/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T G20626A A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_512170
 2020-05-12 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C G26690T C28854T

EPI_ISL_512182
 2020-05-12 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1457T C3037T T11857C C14408T C19662T A20268G A23403G T24076C C28854T

EPI_ISL_512183
 2020-05-12 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_512185
 2020-05-12 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1457T C3037T T11857C C14408T C19662T A20268G A23403G T24076C C28854T

EPI_ISL_512189
 2020-05-12 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1795/2020
 ATTAAAGGTTT1- C241T C1376T C1457T C3037T -3074GAA T11857C C14408T C19662T A20268G A23403G T24076C A25984C C28854T

EPI_ISL_512192
 2020-05-12 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1801/2020
 ATTAAAGGTTTA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_512193
 2020-05-12 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1802/2020
 ATTAAAGGTTTATACC1- C241T C1457T C3037T C4900T T11857C C14408T C19662T A20268G A23403G T24076C C28854T

EPI_ISL_513195
 2020-05-12 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH859/2020
 C241T C3037T C14408T C15352T A23403G GGG28881AAC

EPI_ISL_513198
 2020-05-12 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH892/2020
 C241T C3037T C14408T GGG28881AAC

EPI_ISL_513205
 2020-05-12 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH955/2020
 C241T C3037T C14408T A23403G G25563T C26735T

EPI_ISL_513206
 2020-05-12 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH956/2020
 C241T C3037T C14408T A23403G G25563T C26735T A27398G C27644T

EPI_ISL_513209
 2020-05-12 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH959/2020
 C241T C3037T C14408T G25563T C26735T

EPI_ISL_513789
 2020-05-12 2020-08-13
 United States hCoV-19/USA/CA-CZB-2339/2020
 T2Y C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_513790 MW036018
 2020-05-12 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2340/2020
 ATTAAAGGTTTA1- C222T C241T C1059T G1681T A2165G C3037T C6445T C14408T G16968T T22160Y A23403G T24835C G25563T G29711T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513791 MW036014
 2020-05-12 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2341/2020
 ATTAAAGGTT1- C241T C1059T C3037T C3602T C14408T C16762T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_515963
 2020-05-12 2020-08-20
 India hCoV-19/India/nimh-17585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A178G T606C C884T G1397A G8653T G11083T G12167A A19073G C27847T G27915T G28300T T28688C C28868T C29077T G29742T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_515964
 2020-05-12 2020-08-20
 India hCoV-19/India/nimh-17608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A178G T606C C884T G1397A G8653T G11083T G12167A A19073G C27847T G27915T G28300T T28688C C28868T C29077T G29742T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_516678 MT913113
 2020-05-12 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0891/2020
 A1- C241T C1059T C3037T C14408T A15367G C17285T A23403G G25563T

EPI_ISL_516679 MT913114
 2020-05-12 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_522777 MT929074
 2020-05-12 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A15367G C17285T A23403G G25563T

EPI_ISL_522781 MT929078
 2020-05-12 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0908/2020
 ATTA1- C241T C1059T C3037T C10747T C13694T T14103C C14408T A23403G C24909A G25563T

EPI_ISL_522782 MT929079
 2020-05-12 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0909/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C10747T C13694T T14103C C14408T A23403G C24909A G25563T C29870A

EPI_ISL_522789 MT929086
 2020-05-12 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T T5834C C8664A G8851A G11365T C12153T C14408T A23403G A25505C GGG28881AAC C29870A

EPI_ISL_522792 MT929089
 2020-05-12 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C7303T C14408T C14925T A23403G G25563T C25587T

EPI_ISL_522793 MT929090
 2020-05-12 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0923/2020
 ATTA1- C241T C1059T C3037T C7303T C14408T C14925T A23403G G25563T C25587T C29870A

EPI_ISL_522794 MT929091
 2020-05-12 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C7303T C9246T C14408T C14925T A23403G G25563T C25587T C29870A

EPI_ISL_523203
 2020-05-12 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1929T C3037T C10833T A12788G C14408T G21777A A23403G A24862G C28869T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523549
 2020-05-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11638C C14408T C16394T A17192C A23403G GGG28881AAC C29708T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_524003
 2020-05-12 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-13179V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C4010T C10029T C10582T C12708T C14408T T14568C A23403G GGG28881AAC G29449T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524004
 2020-05-12 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-13247V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T A3523C T11212C A13063G C14408T A23403G C25889T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524006
 2020-05-12 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-13784V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C2025T C3037T C14408T A23403G GGG28881AAC C29738T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524007
 2020-05-12 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-14716V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T A2296G C3037T C14408T A23403G C24133T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_524118
 2020-05-12 2020-08-27
 United States hCoV-19/USA/UT-08325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T C17125T T19839C A22320G A23403G G25523T G25563T C27964T T29685G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524133
 2020-05-12 2020-08-27
 United States hCoV-19/USA/UT-08346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2704T C2939T C3037T T11698C G12395A C14408T G16935T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524138
 2020-05-12 2020-08-27
 United States hCoV-19/USA/UT-08353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G25563T C27964T G28373T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524155
 2020-05-12 2020-08-27
 United States hCoV-19/USA/UT-08372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C1514T C3037T C6541T C11379T C14408T A22320G A23403G G25444T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524193
 2020-05-12 2020-08-27
 United States hCoV-19/USA/UT-08415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5884T G7936A C13487T C14408T C16887T C22858T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524408
 2020-05-12 2020-08-28
 United States hCoV-19/USA/UT-08688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3244T C8782T C17747T A17858G C18060T T23287C A24694T G26227A C27804T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524993
 2020-05-12 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A A22320G A23403G C25561T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525050
 2020-05-12 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C8782T C17747T A17858G C18060T G22331A T23287C A24694T G26227A T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525060
 2020-05-12 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1555T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525072
 2020-05-12 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C5884T G7936A C13487T C14408T C16887T C22858T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525082
 2020-05-12 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1555T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525094
 2020-05-12 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1555T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525233
 2020-05-12 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C12774T C14408T A22320G G22349A A23403G G25244T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526795
 2020-05-12 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0488/2020
 ATTAAAGG1- C241T C3037T T4389G T10264C C14408T C18877T G18985T G22770A A23403G G25459T G25555T G25563T G28086T G29384T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_527701
 2020-05-12 2020-09-04
 United States hCoV-19/USA/MN-CDC-6318/2020
 C241T C1059T C3037T C8016T A11117G C14408T A23403G G25563T G29449T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528698
 2020-05-12 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/38/2020
 C241T C3037T C14408T A22546G A23403G G25991T C26204T GGG28881AAC A29600G

EPI_ISL_528699
 2020-05-12 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/42/2020
 C186T C241T C823T C3037T C14408T T21775G A23403G C25571T GGG28881AAC

EPI_ISL_528802
 2020-05-12 2020-09-09
 United Kingdom hCoV-19/England/BHRT-24B365B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11653T C14408T C22286T G22520S A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528805
 2020-05-12 2020-09-09
 United Kingdom hCoV-19/England/BHRT-24B35C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T T8857G C12974T C14408T A23403G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530094
 2020-05-12 2020-09-10
 Spain hCoV-19/Spain/MD-R11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T A20268G A23403G C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530192 MT997714
 2020-05-12 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1596/2020
 ATTA1- C241T C1059T C3037T T9070C C14408T C20325T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_532157
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-55336A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532184
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5528A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532196
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-54EC3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G246A C1912T C3037T A7444G C14408T T18309Y G22567A C23188T A23403G G27626C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532202
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-54EE34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G246A C1912T C3037T A7444G C14408T G22567A C23188T A23403G G27626C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532204
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-55376E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4755T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532214
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-553BEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18703A C18747T T21369C C22879A A23403G T28711C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532224
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54C6C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3304T C6573T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532243
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54C452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22471K A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532256
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54E599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T C3373A C14408T C14688T A23403G G27706T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532267
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-55432D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C475T C1059T C3037T T3477C C3736T C11916T C14408T C21342T TTT21980- A23403G G25563T T27324G A27675G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532271
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-55418D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4288T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532282
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5538A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T C27535T GGG28881AAC C29482T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533369
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54D5C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14471T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533372
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54B8A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16362T A17986G A23403G G24095T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533375
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54D54F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533381
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54B73C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1855A C3037T C14408T A23403G C24374T GGG28881AAC G29392T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533382
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54D7D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14471T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533383
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54CC69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9142T G10097A T13216G C14408T A20323G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533385
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54AA34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C4965T C14408T A21717T A23403G GGG28881AAC C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533386
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54B81B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533388
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54CBF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G10097A C14408T C19019T G19072T C21742T A23403G C23731T C26195T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533389
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54CC78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6926T C14408T C21811T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533392
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54DE08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7061C C14408T A23403G C23664T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533394
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-54BF25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G246A C1912T C3037T A7444G C14408T G22567A C23188T A23403G G27626C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533398
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54DDB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13111C C14408T C15237T A23403G G24872K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533402
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54D749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14471T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533410
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54B356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C763Y C3037T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533412
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54D55E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14471T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533413
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-54C9CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3832T C4410T C12439T C14408T A14940G G18984K A23403G GGG28881AAC C29034Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533415
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54BA06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3903T C7764T C14408T C15237T A23403G G23611T C26461T A28795G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533418
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-54CB20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4410T C12439T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533422
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54D4BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25490A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533424
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54DB6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T G11083T C11530T G12721T C14408T A20268G A23403G G24926T C25782T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533425
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54AE65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A G9652T C11195T C14408T G19732A C20148T A23403G G26458T A26530G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533429
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54B9FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T14331C C14408T A15278G A23403G C25350T G28487A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533433
 2020-05-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-548BCA/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2836T C3037T G6463T C9226T C14408T C22498T A23403G A25501G G27996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535000
 2020-05-12 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4C16/2020
 C241T C3037T C14074T C14408T G19072T C21597T A23403G C25066T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_537241
 2020-05-12 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2CE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G704A C3037T C5051T C14408T A23403G A24425C GTT26155- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539831 MW020068
 2020-05-12 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1637/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_542809
 2020-05-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C29085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542810
 2020-05-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542811
 2020-05-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542812
 2020-05-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8499T C14408T C16308T C18060T T18231C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542813
 2020-05-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2228C C3037T C14408T C16163T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542815
 2020-05-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T T20037C A23403G G25563T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542817
 2020-05-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4162T C10188T C14408T C19709T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542839
 2020-05-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C7765T C8334T C8782T C8950T G10642T G12478A T18736C T19713C A23145G C24034T G26107A T26729C G28077C T28144C C28896G C29451T G29554T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542840
 2020-05-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C799T C1059T C3037T C7299T C10319T C14408T C14768T C21682T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542848
 2020-05-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542856
 2020-05-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C11962T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542866
 2020-05-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1077T C3037T C6807T C13620T C14408T A14673G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542869
 2020-05-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-1830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14676T C16726T A23403G T24211C G25647T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545071
 2020-05-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-2021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16647T T18231C A23403G G26230T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545095
 2020-05-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-2061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C29085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545096
 2020-05-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-2062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4240C T6130C C10319T C14408T C16308T C16694T A23403G G25563T A25986T C26882T G27084A C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545103
 2020-05-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-2073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6573T C14408T T16024C A23403G G25563T C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545344
 2020-05-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-2506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19011T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549253 MW040681
 2020-05-12 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549255 MW040683
 2020-05-12 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1473/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_559666
 2020-05-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-488A4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C11461Y C13862T C14408T G21746S A23403G G27459K C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559707
 2020-05-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-460B27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559736
 2020-05-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-45E61C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T C18395T A23403G C23731T C25000T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568981
 2020-05-12 2020-10-02
 France hCoV-19/France/IHU-0827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2189T C3037T C9142T C14408T C15324T C18166T C19895T A23403G G28916T G29425T C29754T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

LR814259
 2020-05-12 2020-06-16
 United Kingdom NORW-EA321
 ATTA1- C241T C3037T C14408T G17814T A19810G A20268G A23403G A23941T TTGCTTTAGCACTCAAT27564-

LR821969
 2020-05-12 2020-06-17
 United Kingdom NORW-EA43D
 ATTAA1- C241T C3037T C14408T G17814T A19810G A20268G A23403G A23941T TTGCTTTAGCACTCAAT27564-

MT810838
 2020-05-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1513-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C14408T A20268G C21058T A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810843
 2020-05-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1525-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1870T C3037T C3159T C7011T C14408T G18677T G19072T A20268G C22388T A23403G C25889T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810861
 2020-05-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1558-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C G27506T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811242
 2020-05-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0565-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C10277T C14408T A23403G C23638T T26960C G28079T GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811244
 2020-05-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0567-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C3551T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811247
 2020-05-12 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0571-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G6367T G11083T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT820127
 2020-05-12 2020-07-30
 United States SARS-CoV-2/human/USA/P44e/2020
 C241T C1059T C3037T C7420A C10319T C12073T C14408T C16289T G20679T A23403G G25563T G27670T C27964T

MT820128
 2020-05-12 2020-07-30
 United States SARS-CoV-2/human/USA/SV100V1/2020
 C241T C1059T C3037T C7420A C10319T C12073T C14408T C16289T G20679T A23403G G25563T G27670T C27964T

MT967901
 2020-05-12 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6318/2020
 C241T C1059T C3037T C8016T A11117G C14408T A23403G G25563T G29449T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_444343
 2020-05-13 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABEDF/2020
 C241T C313T C1758T C3037T C14408T C20428T C20594T A23403G G23909T GGG28881AAC

EPI_ISL_444345
 2020-05-13 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABEFD/2020
 C241T C2940T C3037T C14408T A23403G G29090T

EPI_ISL_444355
 2020-05-13 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1ABFBE/2020
 C241T C3037T C9924T C14408T G16206T A23403G GGG28881AAC C29585T

EPI_ISL_444375
 2020-05-13 2020-05-13
 United Kingdom hCoV-19/England/CAMB-1AC13F/2020
 C241T C3037T C14408T C19170T G19509A G20756T A23403G G25687T GGG28881AAC A29776G A29818G A29824G

EPI_ISL_444434
 2020-05-13 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80E4A/2020
 C241T C3037T C14408T C19170T G19509A G20756T A23403G G25687T GGG28881AAC A29776G A29818G A29824G

EPI_ISL_444445
 2020-05-13 2020-05-13
 United Kingdom hCoV-19/England/CAMB-80EFF/2020
 C241T C313T C3037T C14408T A15792G A23403G GGG28881AAC

EPI_ISL_450340
 2020-05-13 2020-05-20
 Bangladesh hCoV-19/Bangladesh/BARJ_CVASU_CTG_502/2020
 -3A G7C -10TTTCGC A12T C601T C8782T A10329G C15324T G22468T T28144C G28878A G29392T G29742A AATGACAAAAAAAAAAAAAAAAAAAAA29865- A29893G AAAA29895TCGG A29901G A29903GCCGTCGT

EPI_ISL_450341 MT502774
 2020-05-13 2020-05-20
 Bangladesh SARS-CoV-2/Human/BGD/BARJ_CVASU_CTG_503/2020
 ATTAAAGGTTT1- C601T C8782T A10329G C15324T G22468T T28144C G28878A G29392T G29742A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_450841
 2020-05-13 2020-05-22
 Bangladesh hCoV-19/Bangladesh/DU_CARS_5586/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A1163T T2041C C3037T G4444T G8371T C14408T C21846T A23403G GGG28881AAC A29403G T29848A A29850T AG29852TA AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_452872
 2020-05-13 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AFC95/2020
 C241T C3037T C11606T C14408T C16163T A23403G C25624T C26002A GGG28881AAC

EPI_ISL_452876
 2020-05-13 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AFD1A/2020
 C241T C3037T C14408T A23403G C26447T G27281T GGG28881AAC

EPI_ISL_452934
 2020-05-13 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0A79/2020
 C241T C3037T T8644A C14408T C19488T A23403G G25563T GGG28881AAC

EPI_ISL_452935
 2020-05-13 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0A88/2020
 C241T C3037T C10116T C14408T A14737G C19017T A20055G A23403G GGG28881AAC T29377A CGAGGCCACGCGGAGTACGAT29733-

EPI_ISL_452936
 2020-05-13 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0AA6/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_452946
 2020-05-13 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0B76/2020
 C241T A1620G C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC

EPI_ISL_452947
 2020-05-13 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0B94/2020
 C241T C1170T C3037T C11379T C14408T A23403G GGG28881AAC

EPI_ISL_452952
 2020-05-13 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0C0A/2020
 C241T C2508T C3037T C13430T C14408T G21724T A23403G GGG28881AAC

EPI_ISL_452953
 2020-05-13 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0C37/2020
 C241T C3037T G8612T C14408T A23403G GGG28881AAC G29705T

EPI_ISL_452978
 2020-05-13 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B179F/2020
 C241T C3037T C9977A C13694T C14408T G17443T G17608T A23403G G24197T G25429T G28774T

EPI_ISL_452980
 2020-05-13 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B17DB/2020
 C197T C1346T C5622T G11083T G13627T C14805T C15540T C21145T A21362G C21575T G22225T G26144T A28338G G28655T

EPI_ISL_452983
 2020-05-13 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B193F/2020
 C241T C3037T C14408T A23403G C26447T G27281T GGG28881AAC

EPI_ISL_452994
 2020-05-13 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B19E4/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T A27831G GGG28881AAC

EPI_ISL_453000
 2020-05-13 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B1B48/2020
 C241T C3037T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_453172
 2020-05-13 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB4885/2020
 C241T C3037T C14408T A20268G A23403G C28854T G29543C

EPI_ISL_455108
 2020-05-13 2020-05-29
 Sweden hCoV-19/Sweden/20-51391/2020
 C241T C1059T C3037T A6342G C14408T A23403G G24368T G25563T A28294C G29742T

EPI_ISL_455109
 2020-05-13 2020-05-29
 Sweden hCoV-19/Sweden/20-51426/2020
 C241T C3037T A8962G C14408T A17674G C18032T A23403G C25585T T26957C GGG28881AAC

EPI_ISL_455468
 2020-05-13 2020-05-30
 Romania hCoV-19/Romania/284213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T C14408T C17104T A20268G C22879A A23403G G29734C TGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29765-

EPI_ISL_455472
 2020-05-13 2020-05-30
 Romania hCoV-19/Romania/284168/2020
 C241T C1302T T2955G C2983T C3037T C14408T A20268G T22942C A23403G C28854T C29200T C29451T T29559C

EPI_ISL_455477
 2020-05-13 2020-05-30
 Romania hCoV-19/Romania/284371/2020
 C241T C3037T C11674T C14408T A15864G T19839C A23403G GGG28881AAC

EPI_ISL_457247
 2020-05-13 2020-06-02
 United Kingdom hCoV-19/England/EXET-136AC6/2020
 C241T G370T C3037T C8140T T11713C C14408T G19525A G20487T A23125G A23403G C28789T GGG28881AAC G29395T C29743T

EPI_ISL_457329 LR821841
 2020-05-13 2020-06-02
 United Kingdom NORW-EA154
 A1- C241T C3037T A4501G C8367T C14408T C19524T T19964G A23403G GGG28881AAC

EPI_ISL_457330 LR821931
 2020-05-13 2020-06-02
 United Kingdom NORW-EA172
 ATTA1- C241T C3037T G3567A C14408T C15654M T23047C A23403G GGG28881AAC

EPI_ISL_457333 LR814143
 2020-05-13 2020-06-02
 United Kingdom NORW-EA1BE
 ATTAAAGG1- G11083T C14805T T17247C G26144T

EPI_ISL_457344 LR821876
 2020-05-13 2020-06-02
 United Kingdom NORW-EA400
 C241T C3037T C10626T C14408T A23403G G28077T GGG28881AAC

EPI_ISL_457528 LR814157
 2020-05-13 2020-06-02
 United Kingdom NORW-EC4C2
 AT1- C186T C241T C1059T C3037T A9634T C11109T C11916T C14408T A17615G A23403G G25563T C26058T

EPI_ISL_457566 LR821963
 2020-05-13 2020-06-02
 United Kingdom NORW-EC85D
 ATTAA1- C1314T G11083T C14491Y C14805T T17247C G26144T T27451A C28511T C29171T

EPI_ISL_457567 LR814036
 2020-05-13 2020-06-02
 United Kingdom NORW-EC87B
 ATTAAAGGTTT1- C241T C3037T A4501G C8367T C14408T C19524T A23403G GGG28881AAC

EPI_ISL_458054
 2020-05-13 2020-06-03
 India hCoV-19/India/CCMB_L1073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T A3054G C5700A C14408T C16626T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458055
 2020-05-13 2020-06-03
 India hCoV-19/India/CCMB_L1082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T A3054G A4372G C5700A C9693T C14408T C16626T A23403G C23854T G25049T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458056
 2020-05-13 2020-06-03
 India hCoV-19/India/CCMB_L1085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T C5700A C9693T C10815T C14408T C16626T A23403G GGG28881AAC G29474T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458057
 2020-05-13 2020-06-03
 India hCoV-19/India/CCMB_L1089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T C5700A C9693T C10815T C14408T C16626T A23403G C23707T A27379G GAT27382CTC GGG28881AAC G29474T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458058
 2020-05-13 2020-06-03
 India hCoV-19/India/CCMB_L1090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T A23403G A27379G GAT27382CTC GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458059
 2020-05-13 2020-06-03
 India hCoV-19/India/CCMB_L1100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T AA21550CT A23403G GGG28881AAC G29557T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458060
 2020-05-13 2020-06-03
 India hCoV-19/India/CCMB_L1103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T A4372G C5700A C7043T C9693T C14408T C16626T A23403G GGG28881AAC G29557T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_458061
 2020-05-13 2020-06-03
 India hCoV-19/India/CCMB_L1108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T A23403G A25381C GGG28881AAC G29557T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_459932
 2020-05-13 2020-06-05
 India hCoV-19/India/MaxCov0030_CSIR-IGIB/2020
 A1631M C1707Y T3873Y C6310M C6312A G7042R G11083T G12685K T13650K C13730T C15180M A15435R G16823K G19656K C19952M G20263K G21249R A21474T C21658M C23929T T24622Y G27870K C28311T C29460M

EPI_ISL_461004
 2020-05-13 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17641T T19209C A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461145
 2020-05-13 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11620T C14408T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461731
 2020-05-13 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB4922/2020
 C241T C3037T A8032G C9223T C11747T C14408T C18788T T19839C A23403G A24862G GGG28881AAC

EPI_ISL_462034
 2020-05-13 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C7F26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C11750T C13381T C14408T A23403G C23731T A23992T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462052
 2020-05-13 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CBB6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C11750T C13381T C14408T G21600T A23403G C23731T A23992T C25350T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462480 MT576645
 2020-05-13 2020-06-08
 Poland SARS-CoV-2/human/POL/IHG_PAS_3_57/2020
 G219T C241T C3037T T5632C C9430T C10605T C14408T C20436T A23403G G25687T GGG28881AAC C29218T C29769T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_463058
 2020-05-13 2020-06-09
 India hCoV-19/India/ILSCV17741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T G22468T G26730T T28144C G28878A G29742A ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_463060
 2020-05-13 2020-06-09
 India hCoV-19/India/ILSCV18525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2836T C3037T A5647G C14408T C18877T T21703G C22444T A23403G G25563T C26735T C28854T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29730-

EPI_ISL_463061
 2020-05-13 2020-06-09
 India hCoV-19/India/ILSCV18534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A68T C241T C2836T C3037T A5647G A8348G C10074T C14408T C18115T C18877T A19526T T21703G C22444T A23403G G25563T C26735T C28854T CAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29686-

EPI_ISL_463134 MT609597
 2020-05-13 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0378/2020
 AT1-C C241T C1059T C3037T G6694A C11916T C14408T C18998T C20823T A23403G G25563T G25947C G29540A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_463135 MT609598
 2020-05-13 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C11916T C14408T C18998T C20823T A23403G G25563T G25947C G29540A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_463136 MT609599
 2020-05-13 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0380/2020
 ATTAA1- C241T C1059T T1117C C3037T T3655C G6513T C11916T C14408T C18998T C20823T A23403G G25563T G25947C G29540A

EPI_ISL_463137 MT609600
 2020-05-13 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0381/2020
 AT1- C241T C1059T C3037T T3655C C11916T C14408T C18998T C20823T A23403G G25563T G25947C G29540A C29870A

EPI_ISL_467477
 2020-05-13 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0125/2020
 ATTA1- C241T C1387T C3037T T7012A C14408T C18464T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467478
 2020-05-13 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0126/2020
 ATTAAAGGT1- C241T C3037T C3768T C3811T C12005T C14396T C14408T A23403G C26936T GGG28881AAC G29554T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467479
 2020-05-13 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C355T C3037T C4093T C14408T A20268G A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_467481
 2020-05-13 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0129/2020
 ATTAAAGG1- C241T C1387T C3037T T7012A C14408T C18464T A23403G C27434T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_467482
 2020-05-13 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0130/2020
 ATTA1- C241T G2324A C3037T C14408T C20234T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_467483
 2020-05-13 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0131/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20268G A23403G G26144A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_467484
 2020-05-13 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3811T C14396T C14408T C17825T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467485
 2020-05-13 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0133/2020
 ATTAAAG1- C241T C3037T C14408T C16080T C20234T A23403G G25290T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468120
 2020-05-13 2020-06-16
 United States hCoV-19/USA/OR-OHSU-0177/2020
 C241T G487T GTTATG515- C3037T C11563T C14408T C18877T GAA20263ATT A23403G G24550A G25563T

EPI_ISL_468463 MT628191
 2020-05-13 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1517/2020
 C241T C379A C1059T C3037T C10369T C10741Y C12115T G12202T G12514K C14408T A23403G G25563T G28378K

EPI_ISL_469472
 2020-05-13 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C87E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469476
 2020-05-13 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C4D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T T7792C C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469488
 2020-05-13 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C60B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469495
 2020-05-13 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C8BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1387M C1627T C3037T C7851T C14408T C20233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469498
 2020-05-13 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C7BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469502
 2020-05-13 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G7071K G10096A C14408T A23403G G23755T G24199T G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469506
 2020-05-13 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C6FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469516
 2020-05-13 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C10335T A12458G C14408T T16446C A23403G C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469518
 2020-05-13 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C7CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17249T G17722T G21776T T22423C A23403G GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469520
 2020-05-13 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T G10096A C14408T A23403G G23755T G24199T G25563T G28808T G29434C G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469837
 2020-05-13 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471837
 2020-05-13 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20816/2020
 C241T C1059T C2910T C3037T C14408T A23403G G25563T G28882T

EPI_ISL_471838
 2020-05-13 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20817/2020
 C241T C1059T C2910T C3037T C14408T A23403G G24332T G25563T G28882T

EPI_ISL_471839
 2020-05-13 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20818/2020
 C241T C1059T C3037T A5011M C14267T C14408T A23403G G25563T G27147K C28893T

EPI_ISL_471840
 2020-05-13 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20819/2020
 C241T G599A C1059T C3037T G11693K C11916T C14408T C18998T A20553G A23403G G25563T G29540A

EPI_ISL_471842
 2020-05-13 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20821/2020
 C241T C1059T T1703C C3037T A5011M C14267T C14408T A23403G G25563T G27147K C28893T

EPI_ISL_472737
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15D601/2020
 ATTA1- C241T G1738T C3037T C13862T C14408T A23403G G27798T G28396T C28836T

EPI_ISL_472742
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15D759/2020
 ATTA1- C241T C3037T C6026T G11801A C14408T T19839C A23403G G25552T A27636G AG28877TC GGG28881AAC G29751T

EPI_ISL_472754
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15DA14/2020
 ATTAAAGGTTTA1- C241T C3037T A9949R C14408T C14741T C22997Y A23403G T24923Y G25459K

EPI_ISL_472760
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15DAF6/2020
 AT1- C241T C3037T C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_472763
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15DB7B/2020
 ATTAAAGGTTTATACCTTC1- C241T C829T C1059T C3037T C11339Y C14408T A23403G G25563T G27415A G28371T

EPI_ISL_472768
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15DC78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T ATG518- C3037T C6406T T9643C C9962T C14408T A23403G GGG28881AAC G29777T

EPI_ISL_472769
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15DC87/2020
 C241T C3037T C14408T A23403G G26062T GGG28881AAC

EPI_ISL_472793
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E0C6/2020
 ATTA1- C241T C3037T T9743C C10448T G11083K C14408T C14741T A23403G

EPI_ISL_472799
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E187/2020
 ATTAAAGGTTTATACCTTCC1- C241T T847G C2749T C3037T C6026T G11801A C14408T T19839C A23403G G25552T C27972T AG28877TC GGG28881AAC C29555T

EPI_ISL_472808
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E372/2020
 AT1- C241T T847G C2749T C3037T C6026T G11801A C14408T T19839C A23403G G25552T C27972T AG28877TC GGG28881AAC C29555T

EPI_ISL_472809
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E381/2020
 ATTA1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_472814
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E406/2020
 ATTA1- C241T G1738T C3037T C13862T C14408T A23403G G28396T C28836T

EPI_ISL_472825
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E697/2020
 ATTAAAGGT1- C241T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_472835
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E819/2020
 ATT1- C241T C3037T A9193G C11471T C14408T C14741T T20175C C22997T A23403G T24923C G25459T AAAAA29899-

EPI_ISL_472839
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E873/2020
 C241T C3037T C6040T G10097A C14408T C21622T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_473660
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9724T C14408T C18747T T21369C C22879A A23403G G28857T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473662
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3689A T9911C T11660A C14408T C21302T CG21304AA A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473873
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6127/2020
 C241T C3037T C10798A C13862T C14408T A22029G A23403G C28836T

EPI_ISL_473874
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6128/2020
 C241T C3037T C10798A C13862T C14408T A23403G C23638T C28836T

EPI_ISL_473875
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6129/2020
 C241T C3037T G6461T C12915T C14120T C14408T A20268G C22009T A23403G G27987T C28775T C28854T

EPI_ISL_473876
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6130/2020
 C241T C3037T G6461T C12915T C14120T C14408T A20268G C22009T A23403G G27987T C28775T C28854T

EPI_ISL_473952
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6391/2020
 C241T C2113T C3037T C7765T C12194T C13968T C14189T C14408T C17690T C18877T A23403G T24923C G25563T

EPI_ISL_473953
 2020-05-13 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6392/2020
 C241T C2113T C3037T C7765T C13968T C14189T C14408T C17690T C18877T A23403G T24923C G25563T

EPI_ISL_475566
 2020-05-13 2020-06-23
 Sweden hCoV-19/Sweden/20-14611/2020
 C241T AAGTCATTT686- C1059T C3037T C14408T C16308T A23403G G24368T C25207T G25563T

EPI_ISL_476883
 2020-05-13 2020-06-26
 India hCoV-19/India/DRDE 3510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C3037T C5031T C14408T A23118M A23403G G24348C T25085K G29734T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477007
 2020-05-13 2020-06-27
 Belgium hCoV-19/Belgium/rega-0513430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C3037T G3838T C4551T A11762G A11839G C14408T T16047A C16887T T19839C A23403G C26192T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478195
 2020-05-13 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB4898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8032G C14408T C18788T T19839C A23403G A24862G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478230
 2020-05-13 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1590T C3037T C10798A G12514T C13862T C14408T A23403G G24998C T25580C C28836T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478232
 2020-05-13 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C14503T A23403G C27532T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478233
 2020-05-13 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C784T C3037T C5849T C9286T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478267
 2020-05-13 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T967C G970A C3037T G11083T C14408T A20268G G22225T A23403G T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479198
 2020-05-13 2020-06-30
 United Kingdom hCoV-19/England/SHEF-C1830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18803T C20719T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479529
 2020-05-13 2020-06-30
 India hCoV-19/India/NIV-28815/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14178T C14408T G20352T A21343G A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479531
 2020-05-13 2020-06-30
 India hCoV-19/India/NIV-29053/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480298
 2020-05-13 2020-07-01
 Bulgaria hCoV-19/Bulgaria/15/2020
 G1440A G2891A G16917T A23898T C26461T A27669G

EPI_ISL_481550
 2020-05-13 2020-07-03
 Finland hCoV-19/Finland/13May68S20/2020
 C241T C2416T C3037T G11143T C14408T C14937T G17658T A19674G G19816T A23403G G23611A G25563T T29793A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482427
 2020-05-13 2020-07-03
 United States hCoV-19/USA/OR-PROV-178/2020
 C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T

EPI_ISL_482428
 2020-05-13 2020-07-03
 United States hCoV-19/USA/OR-PROV-179/2020
 C241T C3037T C14408T C15952T G20980A A23403G

EPI_ISL_482429
 2020-05-13 2020-07-03
 United States hCoV-19/USA/OR-PROV-180/2020
 C241T C1059T C3037T G7037A C14408T A23403G G25563T C26110T A29700G

EPI_ISL_482430
 2020-05-13 2020-07-03
 United States hCoV-19/USA/OR-PROV-182/2020
 A4236G G11083T C14805T C19029T T25655C G26144T G26167T

EPI_ISL_482774
 2020-05-13 2020-07-06
 Egypt hCoV-19/Egypt/MASRI-029/2020
 C241T C3037T C14408T G17722T A23403G G25563T C28849T G29744A T29848A A29850T

EPI_ISL_483038
 2020-05-13 2020-07-07
 Egypt hCoV-19/Egypt/MASRI-028/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C449T C1059T C1884T C3037T C14408T A23403G G25563T G26031A C27559T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852TA

EPI_ISL_483229
 2020-05-13 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0568-SAN/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_483230
 2020-05-13 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0570-IPL/2020
 ATTAAAGGTTT1- G91T C241T C3037T C14408T A20268G A23403G C28854T C28887T

EPI_ISL_483233
 2020-05-13 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0577-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G208T C241T C3037T T10330C C14408T T15915C A20268G A23403G C28854T

EPI_ISL_483234
 2020-05-13 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0578-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T C14408T G17014T C18457T A23403G G25552A G25563T

EPI_ISL_483235
 2020-05-13 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0579-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A20268G A23403G G24794T C28313G C28854T

EPI_ISL_483237
 2020-05-13 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0581-IPL/2020
 ATTA1- G91T C241T C3037T C14408T A20268G A23403G C28854T C28887T

EPI_ISL_483335
 2020-05-13 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0755-IPL/2020
 AT1- C241T C2594T C3037T C4582T C11102T C14408T A17757G A20268G C21541T A23403G

EPI_ISL_483336
 2020-05-13 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0756-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2594T C3037T C4582T C11102T C14408T A17757G A20268G C21541T A23403G

EPI_ISL_483337
 2020-05-13 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0757-IPL/2020
 C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_484269
 2020-05-13 2020-07-08
 United Kingdom hCoV-19/England/NORT-2963F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2854G C3037T A3069G G5716T C8772T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484322
 2020-05-13 2020-07-08
 United Kingdom hCoV-19/England/NORT-29F0E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6537A C11001T C13862T C14408T A23403G A25448G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484454
 2020-05-13 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C568D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T C19884T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484657
 2020-05-13 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR3504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G19542T G20679A A23403G C24372T T27576G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485809
 2020-05-13 2020-07-09
 Germany hCoV-19/Germany/BW-2005-cov-001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C3037T G4136T G10265A C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_485810
 2020-05-13 2020-07-09
 Germany hCoV-19/Germany/BW-2005-cov-002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C3037T C14408T G15406T G17278T T25550A C28720T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486282 MT750455
 2020-05-13 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2036/2020
 AT1- C241T C337T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_486347 MT750500
 2020-05-13 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2117/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C18998T C19145T A23122R A23403G G25563T T25902W T25908W G25913S G29540A

EPI_ISL_486348 MT750501
 2020-05-13 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2118/2020
 A1- C241T C1059T C3037T C11916T C14408T C18998T C19145T A23403G G25563T G29540A

EPI_ISL_486349 MT750502
 2020-05-13 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S C1059T C3037T C11916T C14408T C18998T C19145T A22904W A23122R A23403G G25563T T25902W T25908W G25913S G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487091
 2020-05-13 2020-07-13
 Nigeria hCoV-19/Nigeria/OY233-CV66/2020
 ATTAAA1- C241T C1684T C3037T C3811T G4255T T6067C A6608G C10802T C13019T C14408T C18877T A23403G G25563T C26735T A28911T

EPI_ISL_487435
 2020-05-13 2020-07-14
 Belgium hCoV-19/Belgium/ITM_C2183/2020
 A361G C3589T C8782T C18959T G20477T G22468T G26152A T28144C G28878A G29742A

EPI_ISL_488042
 2020-05-13 2020-07-14
 United Kingdom hCoV-19/England/NORT-29639B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174C C241T C3037T G10097A T13216G C14408T C17119T A19960G C22530T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488840
 2020-05-13 2020-07-14
 United Kingdom hCoV-19/England/WSFT-25C19D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G A3003T C3037T C5730T C7231T C13378Y C14408T G19542T C22747T A23403G G24328A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488861
 2020-05-13 2020-07-14
 United Kingdom hCoV-19/England/WSFT-25C1A11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3263G C9474T C14408T C21691T A23403G C25047T A27133T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490617
 2020-05-13 2020-07-15
 United Kingdom hCoV-19/England/SHEF-CA257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C207T C241T C3037T C5585A G10097A C11750T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492958
 2020-05-13 2020-07-20
 United Kingdom hCoV-19/England/NORT-28C310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T G24434K T28203C GGG28881AAC G29468K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493427 MT856687
 2020-05-13 2020-07-21
 United States SARS-CoV-2/human/USA/SC-USC-PRG443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6696T C10319T C14408T C19170T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493452
 2020-05-13 2020-07-21
 United Kingdom hCoV-19/England/NORT-285A12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493699
 2020-05-13 2020-07-21
 United Kingdom hCoV-19/England/SHEF-CAD83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7008T T7438C G10097A C14408T A23403G C23731T C26028T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493919
 2020-05-13 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493920
 2020-05-13 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493921
 2020-05-13 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1576C C3037T C14408T A20268G A23403G C25844T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493922
 2020-05-13 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494647
 2020-05-13 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1912T C3037T C14408T A15283G T15432C A20268G A23403G T24076C G28300T C28854T

EPI_ISL_495274
 2020-05-13 2020-07-22
 India hCoV-19/India/CCMB_OM1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2325T C3037T G4354A C6573T C14408T A23403G C25528T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495286
 2020-05-13 2020-07-22
 India hCoV-19/India/CCMB_OM2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T A23403G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495287
 2020-05-13 2020-07-22
 India hCoV-19/India/CCMB_OM2_ONT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_495289
 2020-05-13 2020-07-22
 India hCoV-19/India/CCMB_OM3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4354A G5880C C6573T C14408T G19918T G21099T A23403G C25528T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495290
 2020-05-13 2020-07-22
 India hCoV-19/India/CCMB_OM4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C506T C3037T G4354A C6573T T10045C C14408T C21575T A23403G C25528T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495703
 2020-05-13 2020-07-23
 United States hCoV-19/USA/WA-S1253/2020
 A1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_495705 MT821718
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1255/2020
 ATTAAAG1- C241T C1059T C3037T A5084G C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495707 MT821721
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1257/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T G16912T A23403G G25563T C28810T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495709 MT821688
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1259/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T G11083T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495710 MT821664
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1260/2020
 ATTAAAG1- C241T C1059T C3037T A5084G C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495711 MT821714
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1261/2020
 ATT1- C241T C1059T C3037T A5084G C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495712 MT821546
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1262/2020
 AT1- C241T C3037T A5538T C14408T G16813A T21802C A23403G T25783C C26022T C27059T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495713 MT821611
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1263/2020
 ATTAAAGGTTTATAC1- G45T C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_495714 MT821755
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C15933T A17267G T19839C G22352T A23403G GGG28881AAC C29784T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_495715 MT821539
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1265/2020
 AT1- C241T C3037T C13255T C14408T C15933T A17267G T19839C G22352T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495716 MT821676
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1266/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T T4441C G6125A A12557C C14408T C17639T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495742 MT821573
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1292/2020
 ATTAAAGGTTTATACC1- C241T C3037T A12410G G12832T C14408T G19384A T19632A T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495743 MT821630
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1293/2020
 ATTAAAGGTTTAT1- C241T C3037T A12410G G12832T C14408T G19384A T19632A T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495757 MT821620
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1307/2020
 AT1- C241T C3037T C6445T C14408T G16813A G16852T A21821T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495761 MT821575
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1311/2020
 AT1- C241T G343T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_495762 MT821643
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T T1837C C3037T C14408T G16813A A23403G T25783C GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_495763 MT821631
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1313/2020
 AT1- C241T T1837C C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_495764 MT821554
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1314/2020
 AT1- C241T A2127G C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495765 MT821764
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1315/2020
 A1- C241T G625T C3037T C13381A C14408T C15933T G16968T G18782T T19839C A23403G G25879T G27240T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_495766 MT821584
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1316/2020
 AT1- C241T A2127G C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495784 MT821638
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1334/2020
 ATT1- G354A C2070T C8782T A11854G G14028T A15263G C17747T A17858G C18060T T23084C A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495785 MT821614
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1335/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_495786 MT821537
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1336/2020
 A1- G1401A C5002T C5817T C8782T A10785G G16141T C17747T A17858G C18060T C26322T T28144C C29367T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_495788 MT821758
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1338/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C A23403G C26499T C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495789 MT821556
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1339/2020
 A1- C241T C1059T C3037T T13216C C14408T A23403G G24328C C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_495790 MT821579
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1340/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T T13216C C14408T A23403G G24328C C24382T G25563T A26562G C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495793 MT821552
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1343/2020
 AT1- C241T C1059T C3037T T13216C C14408T C18807T A23403G G24328C C24382T G25563T A26562G C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_495794 MT821636
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1344/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T T13216C C14408T A23403G G24328C C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495795 MT821560
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1345/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T T13216C C14408T A23403G G24328C C24382T G25563T A26562G G26713T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495796
 2020-05-13 2020-07-23
 United States hCoV-19/USA/WA-S1346/2020
 AT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_495797 MT821634
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1347/2020
 AT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495811 MT821550
 2020-05-13 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1361/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_499363
 2020-05-13 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168EDE/2020
 ATTA1- C241T C1059T C3037T C10376T C14408T G18583T A23403G G23868T G24368T G25563T G27390C G29773T

EPI_ISL_504185
 2020-05-13 2020-08-01
 Canada hCoV-19/env/Canada/AB-Z0001/2020
 ATT1- C241T C512T C823T C1913T C2416T G2528A C2721T C3037T C12525T C12695Y C14408T C15952Y C16575T C16806T A16923G G17679T C17845Y C19484Y G20014T C21254T A23122W A23403G G25563T A25718G C26151T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507184
 2020-05-13 2020-08-03
 United Kingdom hCoV-19/Scotland/EDB6683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18904T A23403G G25606T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507258
 2020-05-13 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII14691V/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507260
 2020-05-13 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15163S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4297G A5040G C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_508425
 2020-05-13 2020-08-04
 India hCoV-19/India/MW17/2020
 A1- A4T C241T C313T C3037T C5700A C13458T C14408T C15810T A23403G GGG28881AAC G29868A

EPI_ISL_509834 MT846518
 2020-05-13 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5622T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509835 MT846519
 2020-05-13 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5575T A9749G C14408T C14599T G15732T T19143C A20268G G22093T A23403G C26028T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509950 MT846637
 2020-05-13 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- T809A C1059T C3037T G3304T C12823T C14408T C15450T C16017T C16616T C17288T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510602
 2020-05-13 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510606
 2020-05-13 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2268/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_510832
 2020-05-13 2020-08-07
 Sweden hCoV-19/Sweden/20-51576/2020
 G204T C241T C1059T C3037T C14408T G15380T G15438T G20940T A23403G G25563T

EPI_ISL_512165
 2020-05-13 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1751/2020
 ATTAAAGGTTT1- C241T C1457T C3037T C7119T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_512169
 2020-05-13 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C7768T C11575T C14408T C15755T A20268G A23403G C28854T

EPI_ISL_512172
 2020-05-13 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1771/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_512174
 2020-05-13 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1457T C3037T C7119T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_512175
 2020-05-13 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1457T C3037T C7119T C14408T A20268G A23403G T24076C C28054T C28854T

EPI_ISL_513788 MW035990
 2020-05-13 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCA1- C10277T C27208Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513793 MW036031
 2020-05-13 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2344/2020
 C241T C3037T C5301Y C14408T G21255C A23403G GGG28881AAC G28960T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_513794
 2020-05-13 2020-08-13
 United States hCoV-19/USA/CA-CZB-2345/2020
 T2Y C241T C3037T C11704Y C14408T T15669C A20268G A23403G G28621R G29734C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_513795 MW036020
 2020-05-13 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2346/2020
 C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_513796 MW036008
 2020-05-13 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2347/2020
 ATT1- T112K C241T C3037T C14408T G21255C A23403G A28084G GGG28881AAC G28960T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513798 MW036029
 2020-05-13 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2350/2020
 C203M C241T T326Y C3037T C14408T G21255C A23403G GGG28881AAC G28960T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513800 MW036062
 2020-05-13 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2353/2020
 C207M C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T A29507T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_513801 MW036011
 2020-05-13 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2354/2020
 TTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCC2- C241T C3037T C3552Y C14408T G21255C G22014T A23403G GGG28881AAC G28960T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513802 MW036035
 2020-05-13 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2355/2020
 C241T C1884Y C3037T C14408T G21255C A23403G C27434Y GGG28881AAC G28960T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_513803 MW035984
 2020-05-13 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T

EPI_ISL_513804 MW036053
 2020-05-13 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2357/2020
 AT1- C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T AAAAAA29898-

EPI_ISL_516677
 2020-05-13 2020-08-21
 United States hCoV-19/USA/VA-DCLS-0888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C10747T C13694T T14103C C14408T A23403G C24909A G25563T G26152T C29870A

EPI_ISL_516681 MT913116
 2020-05-13 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T G1042A C1059T C3037T G7393T C14408T C14925T A23403G G25563T T29021C C29870A

EPI_ISL_516682 MT913117
 2020-05-13 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C26151T G29868A C29870A

EPI_ISL_516683 MT913118
 2020-05-13 2020-08-21
 United States SARS-CoV-2/human/USA/VA-DCLS-0898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T A11219G C14408T A23403G G25563T T25651C

EPI_ISL_516684
 2020-05-13 2020-08-21
 United States hCoV-19/USA/VA-DCLS-0899/2020
 ATTAAAGGTTTATAC1- T17A C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC C29870A

EPI_ISL_520681
 2020-05-13 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290161092/2020
 C241T G2098T C3037T G11083T C14408T C18364T A20268G A23403G G25906T

EPI_ISL_520682
 2020-05-13 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290162047/2020
 C241T C3037T C14408T C20099T C20574T C20930T A23403G G28209C GGG28881AAC

EPI_ISL_520683
 2020-05-13 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290165435/2020
 C8782T C9223T G11230T C18183T C23855T C26681T G27077A T28144C G28878A G29742A

EPI_ISL_520684
 2020-05-13 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290165790/2020
 C241T C3037T C4965T A8072G C10138T C14408T A16011G A21213G A23403G G28077A GGG28881AAC

EPI_ISL_522778 MT929075
 2020-05-13 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T2987C C3037T C9491T C14408T A23403G G25660A

EPI_ISL_522779 MT929076
 2020-05-13 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10747T C13694T T14103C C14408T A23403G C24909A G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_522783 MT929080
 2020-05-13 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0910/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T C3821T G12211T C14408T A23403G A24069T G25563T C28163T G29422T C29870A

EPI_ISL_522785 MT929082
 2020-05-13 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8664A G8851A C10537T C14408T C16750T C17463T A23403G A25505C GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_522786 MT929083
 2020-05-13 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0914/2020
 AT1- C241T C3037T A6657C C14408T C18877T A23403G C24358T G25563T G28851T C29870A

EPI_ISL_522788 MT929085
 2020-05-13 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0917/2020
 ATTAAAGGTTT1- C241T C1059T T1864C C3037T C6040T C14408T C16289T C19263T A23403G G25563T

EPI_ISL_522790 MT929087
 2020-05-13 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0919/2020
 ATTA1- C241T C1059T C3037T T6958C C7162T C11074T G11083T C14134T C14408T A23403G G25563T T27384C

EPI_ISL_522791 MT929088
 2020-05-13 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0920/2020
 ATTAAAGGT1- C241T C3037T C8664A G8851A C14408T C19983T A23403G A25505C GGG28881AAC G29755T C29870A

EPI_ISL_522795 MT929092
 2020-05-13 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0926/2020
 ATTAAAGGTT1- C241T C1059T C3037T C14408T C14925T G17808T A23403G G25563T C29870A

EPI_ISL_523359
 2020-05-13 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5014G C8480T C14358T C14408T A23403G A24862G G28079T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523499
 2020-05-13 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C C934T ATG1605- C17410T A21706G C27002T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524008
 2020-05-13 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-15054S/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C14195A C14408T T15978C C23277T A23403G G29705T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524109
 2020-05-13 2020-08-27
 United States hCoV-19/USA/UT-08313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3518T C13536T C14408T A23403G G25429T T29672C G29717A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524111
 2020-05-13 2020-08-27
 United States hCoV-19/USA/UT-08316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3611T A11782G C14408T A23403G C26256T C29668T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524125
 2020-05-13 2020-08-27
 United States hCoV-19/USA/UT-08336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7315C C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524142
 2020-05-13 2020-08-27
 United States hCoV-19/USA/UT-08359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T A1236G C1514T C3037T C6541T C11379T C14408T A22320G A23403G G25444T G25563T C27964T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524143
 2020-05-13 2020-08-27
 United States hCoV-19/USA/UT-08360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5884T G7936A C13487T C14408T C16887T C22858T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524151
 2020-05-13 2020-08-27
 United States hCoV-19/USA/UT-08368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T A12110G C14408T C14657A G15908A C16308T C19897T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524162
 2020-05-13 2020-08-27
 United States hCoV-19/USA/UT-08379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3729A C5184T C14408T C16936T A23403G C26256T C29668T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524183
 2020-05-13 2020-08-27
 United States hCoV-19/USA/UT-08404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1555T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524191
 2020-05-13 2020-08-27
 United States hCoV-19/USA/UT-08413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C875T C1059T C3037T A7870G G13813T C14408T A23403G G25563T C27964T C28093T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524194
 2020-05-13 2020-08-27
 United States hCoV-19/USA/UT-08416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C1514T C3037T C6541T C11379T C14408T A22320G A23403G G25444T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524202
 2020-05-13 2020-08-27
 United States hCoV-19/USA/UT-08426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3729A C5184T C14408T C16936T A23403G C26256T C29668T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524210
 2020-05-13 2020-08-27
 United States hCoV-19/USA/UT-08434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T T8284C C12774T C14408T A22320G G22349A A23403G G25244T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524800
 2020-05-13 2020-08-28
 Brazil hCoV-19/Brazil/PA-IEC-166687/2020
 C241T C3037T C4345T G12721A C14408T C15324T C16428T A23403G C29095T G29477C C29614T

EPI_ISL_525049
 2020-05-13 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C5884T G7936A C13487T C14408T C16887T C22858T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525058
 2020-05-13 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1221T C2939T C3037T T11698C C14408T C17274T A23403G C23934A G26211T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525083
 2020-05-13 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C2939T C3037T T11698C C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525108
 2020-05-13 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C11379T C14408T C17125T T19839C A22320G A23403G G25523T G25563T C27964T T29685G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525239
 2020-05-13 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C14408T A15436G A22320G A23403G G25244T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525250
 2020-05-13 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C1514T C3037T C6541T C11379T C14408T A22320G A23403G G25444T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525287
 2020-05-13 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C4878T C14408T G21099T A22525G A23403G G25563T C27964T C29272T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525290
 2020-05-13 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T A11782G C14408T A23403G C26256T C29668T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526505
 2020-05-13 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB6895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T C17550T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526550
 2020-05-13 2020-09-01
 United Kingdom hCoV-19/England/20204112904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T GTTATG515- C3037T C4655T G7798T C14408T C19488T A23403G C27532T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527480
 2020-05-13 2020-09-02
 United States hCoV-19/USA/CO-CSU-E0462-2/2020
 C241T C1059T C3037T C6285T C14408T G20616T A23403G A24129G G25552T G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528994
 2020-05-13 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE46129/2020
 A1CCA AAGGTTTATACCTTCCCAGGTAACAAACC5G C37A C241T C3037T A6866W A6869W C14408T A23403G AAAAAAAAAAAAA29891-

EPI_ISL_530095
 2020-05-13 2020-09-10
 Spain hCoV-19/Spain/MD-R17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T G22331A A23403G C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530191 MT997713
 2020-05-13 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1595/2020
 ATTAAAGGTTTATA1- C241T C1059T G1463A C3037T G7557A C8818T G9049T C14408T A20284G C22477T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862C

EPI_ISL_532165
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-541EB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19145T A23403G A24196G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532192
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-54542C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G885T C3037T C9430T C14408T C18457T G18677T A21405T A23403G C23701T GGG28881AAC TAATTTTAG29817- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532222
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5428D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T C3037T C14408T T19584C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532223
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-544108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3903T C7764T C14408T C15237T A23403G G23611T C26461T A28795G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532226
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-541A3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G C3037T A12864G C14408T G21330K A23403G G24821K C25693T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532227
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-540C83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G A1208G C3037T A12864G C14408T A23403G C25693T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532236
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54136F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25774Y A26927G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532247
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-541FF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T C3373A C14408T C14688T A23403G C26270T G27706T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532252
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5411ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5826T C14408T TTA21991- A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533352
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-548939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C2644T C3037T C14408T A23403G G23948T G25687T C26313T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533371
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54933A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C13862T C14408T A23403G C25714T C27294T G28027T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533378
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54A339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C18744T A18978G G21987T A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533395
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-549604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533400
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54A445/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1389G A1788G C3037T C14408T A23403G T25081C C25693T A27076G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533404
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5494A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21624T T22195C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533406
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-549E48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18747T T21369C C22879A A23403G G28857T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533419
 2020-05-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-54A023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A363G C2146T C3037T C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539533
 2020-05-13 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2012562/2020
 C241T G2129A C3037T C14408T A20268G A23403G

EPI_ISL_539534
 2020-05-13 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2012563/2020
 C241T G2129A C3037T T7092C C8025T C9180T C14408T A20268G A21706G A23403G

EPI_ISL_541335
 2020-05-13 2020-09-22
 Czech Republic hCoV-19/Czech Republic/NRL-6849-8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9693T C11620T C14408T A23403G TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_542825
 2020-05-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T9853C C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542841
 2020-05-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11653T C14408T T15042C C18463T A23403G G25563T C26735T C27964T T28200C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542854
 2020-05-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T T15606C A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542860
 2020-05-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5806T C14408T C20474T A23403G A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542863
 2020-05-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C18788T C21304T A23403G C25350T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542868
 2020-05-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542871
 2020-05-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542873
 2020-05-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542899
 2020-05-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8499T C14408T C18060T T18231C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542910
 2020-05-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542920
 2020-05-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-1956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14676T A23403G G25647T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545069
 2020-05-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-2015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4931A C6990T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545073
 2020-05-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-2023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G968A C1059T C3037T C8320T C14408T C22311T C23191T A23403G G25563T A29396C G29440A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559662
 2020-05-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-488CBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G9479T G10097A C13536T C14408T C21772T A23403G C23731T T24063C A25948G C26527T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559664
 2020-05-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-4887DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1847C C3037T G3216K C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559680
 2020-05-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-4860D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559704
 2020-05-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-45F6DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6723T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559705
 2020-05-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-4619FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10232T C13965T C14408T A23403G G24620T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559730
 2020-05-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-45F7EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1469T C3037T A11270T C14408T C17822T C20930T A23403G C28854Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559741
 2020-05-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-460969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C344T T383G C3037T C6388T T9139C G10097A C14408T C18828T A23403G C23731T C27999T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559742
 2020-05-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-460D5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C4755T A11430G C14408T G17122K C20719Y A21801C A23403G G25563T C28214T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559743
 2020-05-13 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-45F7FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C13119T C14408T C21767T A23403G A25891C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559744
 2020-05-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-45F675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4683T C6723T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559751
 2020-05-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-460C7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C344T T383G C3037T C6388T T9139C G10097A C10790T C14408T C18828T A23403G C23731T C27999T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560347
 2020-05-13 2020-09-29
 United States hCoV-19/USA/NM-UNM-00609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T582C C1059T C3037T C13176T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560348
 2020-05-13 2020-09-29
 United States hCoV-19/USA/NM-UNM-00616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12315A C14408T T20631A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560407
 2020-05-13 2020-09-29
 Italy hCoV-19/Italy/CAM-IZSM-52479-129/2020
 ATTAAAGGTTT1- C241T C3037T G12338T C12342T T12881C C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_568978
 2020-05-13 2020-10-02
 France hCoV-19/France/IHU-0820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C2189T C3037T C9142T C14408T C15324T C18166T T20322C A23403G C27297T G28916T C29754T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_568980
 2020-05-13 2020-10-02
 France hCoV-19/France/IHU-0823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T G18397T A23403G C23929T G25563T G25767T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT810848
 2020-05-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1533-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1912T C3037T C14408T A15283G T15432C A20268G A23403G T24076C G28300T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811245
 2020-05-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0568-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811246
 2020-05-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0570-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T C28887T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811249
 2020-05-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0577-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T T10330C C14408T T15915C A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811250
 2020-05-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0578-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T C18457T A23403G G25552A G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811251
 2020-05-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0579-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G G24794T C28313G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811253
 2020-05-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0581-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G C28854T C28887T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811348
 2020-05-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0755-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2594T C3037T C4582T C11102T C14408T A17757G A20268G C21541T A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811349
 2020-05-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0756-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2594T C3037T C4582T C11102T C14408T A17757G A20268G C21541T A23403G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811350
 2020-05-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0757-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_418660
 2020-05-14 2020-03-30
 Belgium hCoV-19/Belgium/ULG-9732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_452986
 2020-05-14 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B196C/2020
 C241T C3037T C9977A C13694T C14408T G17443T G17608T A23403G G24197T G25429T

EPI_ISL_454497
 2020-05-14 2020-05-28
 Kazakhstan hCoV-19/Kazakhstan/16173/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

EPI_ISL_455110
 2020-05-14 2020-05-29
 Sweden hCoV-19/Sweden/20-51445/2020
 C241T C3037T T4933C C14408T A23403G C27453T GGG28881AAC

EPI_ISL_455111
 2020-05-14 2020-05-29
 Sweden hCoV-19/Sweden/20-51474/2020
 C241T C2306T C3037T C14408T A23403G C26111T GGG28881AAC G29140T

EPI_ISL_455470
 2020-05-14 2020-05-30
 Romania hCoV-19/Romania/284489/2020
 C241T C1469T C3037T C14408T A19002G A23403G T23849C GGG28881AAC

EPI_ISL_455471
 2020-05-14 2020-05-30
 Romania hCoV-19/Romania/284508/2020
 C241T G526T C3037T C14408T A23403G C29722T

EPI_ISL_455473
 2020-05-14 2020-05-30
 Romania hCoV-19/Romania/284056/2020
 C241T G1068A C3037T C14408T T19839C G22484T C22513T A23403G C25207T GGG28881AAC

EPI_ISL_455474
 2020-05-14 2020-05-30
 Romania hCoV-19/Romania/284783/2020
 C241T C3037T C14408T T19839C A23403G C26735T C28757T GGG28881AAC

EPI_ISL_455475
 2020-05-14 2020-05-30
 Romania hCoV-19/Romania/284762/2020
 C241T C3037T C14408T T19839C A23403G C26735T C28757T GGG28881AAC

EPI_ISL_455479
 2020-05-14 2020-05-30
 Romania hCoV-19/Romania/284468/2020
 C241T T1822C C3037T G3570A C4464T T4591C A4607C C5993A A12103T A12105C T12204A T12216A T12607C C14408T T19839C C21855T C22879T A23403G GGG28881AAC

EPI_ISL_457325
 2020-05-14 2020-06-02
 United Kingdom hCoV-19/England/NORT-292739/2020
 C241T C3037T C3177T G10097A C14408T A23403G C25714T C25771T C27739T GGG28881AAC

EPI_ISL_457335 LR821845
 2020-05-14 2020-06-02
 United Kingdom NORW-EA251
 ATTAAAGGTT1- C241T C3037T A9749G C14408T A23403G A24232G G25429T G27788T

EPI_ISL_457342 LR821918
 2020-05-14 2020-06-02
 United Kingdom NORW-EA3C7
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6539T C12915T C14408T A20268G A23403G

EPI_ISL_460585
 2020-05-14 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20537/2020
 C241T C3037T C8964T C14408T A23403G

EPI_ISL_460586
 2020-05-14 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20538/2020
 C241T C3037T C8964T C14408T A23403G C28724Y

EPI_ISL_461007
 2020-05-14 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17641T T19209C A23403G C23525T G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461334
 2020-05-14 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A20531C A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461335
 2020-05-14 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T C17676T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461770
 2020-05-14 2020-06-06
 United Kingdom hCoV-19/England/LOND-D6AC9/2020
 C241T C3037T A4326G C8074T C11455T C14408T C20133T A23403G GGG28881AAC

EPI_ISL_461771
 2020-05-14 2020-06-06
 United Kingdom hCoV-19/England/LOND-D6AE7/2020
 C241T C3037T C14408T A23223G A23403G C25587T T26483C GGG28881AAC

EPI_ISL_462076
 2020-05-14 2020-06-06
 United Kingdom hCoV-19/England/SHEF-D0B71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G188A C241T C3037T A11839G T13950C C14408T T19839C TTA21991- A23403G G25249T G25273T GGG28881AAC G29648C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462891
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_462892
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_462893
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_462894
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_462895
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T G21793C A23403G G24199C G25563T A26183G C28854T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_462896
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G -23836T G25563T A26183G -26442T C27219T C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_462897
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1052/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C3737T C14408T A23403G G25494T G25563T C26060T A26183G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_462898
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_462899
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_462900
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_462901
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1056/2020
 ATT1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_462902
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_462903
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25494T G25563T C26060T A26183G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_462904
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_462905
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1060/2020
 A1- C241T C1059T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T C29367T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_462906
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_462907
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_462908
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T G26172T A26183G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_462909
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1064/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_462910
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T AAC1517- C3037T C3737T T6976C C11919T C14408T A23403G G25563T A26183G C26645T C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_462911
 2020-05-14 2020-06-08
 United States hCoV-19/USA/MN-MDH-1066/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C3737T G5150T C14408T A23403G G25563T A26183G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_463067
 2020-05-14 2020-06-09
 India hCoV-19/India/ILSCV19192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C11200T C13730T C14639T C16017T C16640T G20709T C21646T G24872T C28311T C29555T GATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29751-

EPI_ISL_465663
 2020-05-14 2020-06-11
 United Kingdom hCoV-19/England/20206138804/2020
 C241T C3037T C14408T C18877T G19518T A23403G G25563T C26735T

EPI_ISL_467475
 2020-05-14 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0123/2020
 ATTA1- C241T C1758T C3037T C14408T A20268G A23403G G26144A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_467486
 2020-05-14 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0134/2020
 ATTAAAGGT1- C241T C3037T T12503C C14408T A23403G GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467488
 2020-05-14 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0136/2020
 ATTA1- C241T C3037T G6865T C14408T C19317T A20268G A23403G C25703T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467489
 2020-05-14 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0137/2020
 ATTA1- C241T C1387T C3037T T7012A C14408T C18464T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_467490
 2020-05-14 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0138/2020
 A1- C241T G621A C3037T G9890T C14408T A23403G GGG28881AAC T29317C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_468075
 2020-05-14 2020-06-16
 Bangladesh hCoV-19/Bangladesh/CHRF_0007/2020
 C241T T432C C1758Y C3037T G4201T A7483C C12369T C14408T G20438T A23403G C26527Y C28312T AAAAAAAAAAA29893-

EPI_ISL_468608 MT631800
 2020-05-14 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C878Y C3037T C6040T G11417K C14408T T15669C A20268G A23403G GC27882RY G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468611 MT631802
 2020-05-14 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1669/2020
 ATTA1- C241T C3037T C6040T C14408T T15669C G17972A A20268G A23403G G29734C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_468612 MT631803
 2020-05-14 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1670/2020
 C241T C3037T C6040T C14408T T15669C A20268G A23403G G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468614 MT631805
 2020-05-14 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1672/2020
 ATTAAA1- C241T C1063T C3037T C14408T T15669C A20268G A23403G G29734C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_469059
 2020-05-14 2020-06-17
 Sweden hCoV-19/Sweden/20-14647/2020
 C241T C3037T G12067T C14408T A21137G A23403G G28373T GGG28881AAC G29425T

EPI_ISL_469108
 2020-05-14 2020-06-17
 Singapore hCoV-19/Singapore/353/2020
 G185T C6310A C6312A C8016T G11083T G13348T C13730T C19524T C23929T T27977C C28311T AAAAAAAAAAAA29892-

EPI_ISL_469295
 2020-05-14 2020-06-18
 Japan hCoV-19/Japan/Donner37/2020
 ATTA1- C241T C3037T T3136C C6336T C14074A C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469375
 2020-05-14 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BBD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T C9365Y G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469442
 2020-05-14 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BB3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469470
 2020-05-14 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T A5650G G10097A A12180G C14408T C19524T A23403G C23731T G28580T GGG28881AAC G29033K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469483
 2020-05-14 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A A12180G C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469503
 2020-05-14 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C9D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5312T C9603T C14408T C21846T A23403G G25563T G27852T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469508
 2020-05-14 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C6DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T C7063Y G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469509
 2020-05-14 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469515
 2020-05-14 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C95D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469519
 2020-05-14 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C53B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469521
 2020-05-14 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C9B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7070R G10097A C14408T C19524T A23403G C23731T G27281K G28580T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_471695
 2020-05-14 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20671/2020
 C241T C3037T C14408T A23403G C25609T G29715A AAAAAAAAAAAAAA29890-

EPI_ISL_471696
 2020-05-14 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20672/2020
 C241T C1218T C3037T C12488T C14408T C18877T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_472750
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15D8FC/2020
 ATT1- C241T C3037T C14408T A23403G C24181T GGG28881AAC

EPI_ISL_472753
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15D9CC/2020
 A1- C241T A489G C3037T T5465C A11506G C14408T G21624T C21888G A23403G G24102A GGG28881AAC A29770T

EPI_ISL_472757
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15DA9C/2020
 AT1- C241T C3037T C3828T C7528T C8251Y C14408T T19986C A20268G A22459M A23403G G23755K AAAAAAAAAAAAA29891-

EPI_ISL_472764
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15DBA8/2020
 ATTA1- C241T C3037T T4186C G11801A T11836C C14408T T19839C A23403G G25552T C27641T GGG28881AAC A29526T

EPI_ISL_472771
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15DCF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A20268G G21255T A23403G C28854T

EPI_ISL_472773
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15DD2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T G14126T C14408T C17491T G18433T G21624T A23403G GGG28881AAC

EPI_ISL_472775
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15DD93/2020
 ATTAAAGGTTTA1- C241T C313T C3037T C6651T C12439A C14408T T17556C G17561A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_472780
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15DE90/2020
 ATT1- C241T A489G C3037T T5465C G6387A C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC

EPI_ISL_472782
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15DEEB/2020
 AT1- C241T G942A C3037T C6026T G11801A C14408T T19839C A23403G G25552T AG28877TC GGG28881AAC

EPI_ISL_472810
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E3AF/2020
 C241T C3037T C3551T T5573C C6380T C7420T C11109T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_472820
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E58B/2020
 G1440A G2891A C16466T G19670A G28851T AAA29901-

EPI_ISL_472833
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E7FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T C14741T A23403G

EPI_ISL_473358
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F9BC/2020
 C241T C2299T C3037T G3955T TCAAATTCG6329- C8139T C14408T A23403G T25663C C26936T GGG28881AAC

EPI_ISL_473360
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F9DA/2020
 C241T C2416T C3037T C4002T G10097A C13536T C14408T A23403G C23731T T24733C C25006T GGG28881AAC

EPI_ISL_473361
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F9E9/2020
 C241T C1221T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_473681
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A C3037T C3411T C3885T G12137A C14408T C17104T A17744G A20268G A21137G A23403G G25785T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473801
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4948/2020
 C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC

EPI_ISL_473803
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4950/2020
 C241T C1101T C3037T T5485C C7011T C14408T A23403G A25798G GGG28881AAC

EPI_ISL_473804
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4952/2020
 C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC

EPI_ISL_473805
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4953/2020
 C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC

EPI_ISL_473806
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4956/2020
 C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC

EPI_ISL_473807
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4957/2020
 C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC

EPI_ISL_473808
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4959/2020
 C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC

EPI_ISL_473809
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4961/2020
 C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC

EPI_ISL_473810
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4962/2020
 C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC

EPI_ISL_473811
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4965/2020
 C241T T967C G970A C3037T C14408T A20268G G22225T A23403G C26645T T29753C

EPI_ISL_473812
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB4966/2020
 C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_473878
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6133/2020
 C241T C1059T C3037T T7814C C14408T G18213T A18818G A21137G A23403G G25563T

EPI_ISL_473880
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6136/2020
 C241T C1059T G1944T C3037T T7814C C14408T G18213T A18818G A21137G A23403G G25563T

EPI_ISL_473881
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6138/2020
 C241T C1059T C3037T T7814C C14408T G18213T A18818G A21137G A23403G G25563T

EPI_ISL_473882
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6140/2020
 C241T C1059T C3037T T7814C C14408T G18213T A18818G A21137G A23403G G25563T

EPI_ISL_473883
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6142/2020
 C241T C1059T C3037T T7814C C14408T G18213T A18818G A23403G G25563T

EPI_ISL_473884
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6143/2020
 C241T C1059T C3037T T7814C C14408T G18213T A18818G A21137G A23403G G25563T

EPI_ISL_473885
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6146/2020
 C241T C1059T C3037T T7814C C11339T C14408T G18213T A18818G A21137G A23403G G25563T

EPI_ISL_473886
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6147/2020
 C241T C3037T A4905G C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473887
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6148/2020
 C241T C3037T C10798A C13862T C14408T C14503T A23403G C27532T C28836T

EPI_ISL_473889
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6151/2020
 C241T C3037T G6461T C12915T C14408T A20268G A23403G G27987T C28775T C28854T

EPI_ISL_473890
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6152/2020
 C241T C3037T C10798A C13862T C14408T C14503T A23403G C27532T C28836T

EPI_ISL_473891
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6153/2020
 C241T C3037T C10798A C13862T C14408T C14503T C23121T A23403G C27532T C28836T

EPI_ISL_473892
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6156/2020
 C241T C1059T C3037T T7814C C14408T G18213T A18818G A21137G A23403G G25563T

EPI_ISL_473893
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6157/2020
 C241T C1059T C3037T T7814C C14408T G18213T A18818G A21137G A23403G G25563T

EPI_ISL_473894
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6158/2020
 C241T C1059T C3037T T7814C C14408T G18213T A18818G A21137G A23403G G25563T

EPI_ISL_473895
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6160/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C G26153T C28836T C29640T

EPI_ISL_473954
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6394/2020
 C241T C2113T C3037T C7765T C13968T C14189T C14408T A15249T C17690T C18877T A23403G T24923C G25563T G28747T

EPI_ISL_475240
 2020-05-14 2020-06-23
 United Kingdom hCoV-19/England/PORT-2CF8C7/2020
 C241T C3037T G14310T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_475518
 2020-05-14 2020-06-23
 Sweden hCoV-19/Sweden/20-14679/2020
 C241T C3037T C11956T C14408T T21896C A23403G C24865T GGG28881AAC

EPI_ISL_475519
 2020-05-14 2020-06-23
 Sweden hCoV-19/Sweden/20-14682/2020
 C241T C1059T C3037T C12933A C14408T C22802A A23403G G24368T G25563T

EPI_ISL_476568
 2020-05-14 2020-06-25
 Argentina hCoV-19/Argentina/Heritas_HG009/2020
 C241T C1059T C1342T C3037T C5812T C11916T C14408T A23403G G25563T C28863T G29540A

EPI_ISL_476753
 2020-05-14 2020-06-25
 United States hCoV-19/USA/MN-MDH-1168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C874T C1059T C1812T T2187G C3037T C6651T C10319T A11822G C13665T C14408T A23403G A25411C G25563T C27964T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_476754
 2020-05-14 2020-06-25
 United States hCoV-19/USA/MN-MDH-1169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_476755
 2020-05-14 2020-06-25
 United States hCoV-19/USA/MN-MDH-1170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_478255
 2020-05-14 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9642G G10097A C14408T A23403G C23731T C25714T C25936T G28580T C28849T GGG28881AAC C29274T T29775C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478268
 2020-05-14 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478269
 2020-05-14 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479532
 2020-05-14 2020-06-30
 India hCoV-19/India/NIV-29909/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A T10528C G11939A C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480375 MT772543
 2020-05-14 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T C14408T C16954T A23403G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480933 MT704100
 2020-05-14 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C218T C241T C1059T C3037T C6031T G8366A T11380C C12885T C14408T A23403G G25563T C26151T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480934 MT704101
 2020-05-14 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0283/2020
 ATTAAAGGTTT1- C218T C241T C1059T C3037T C6031T G8366A T11380C C12885T C14408T A23403G G25563T C26151T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480935 MT704102
 2020-05-14 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0284/2020
 AT1- C218T C241T C1059T C3037T C6031T G8366A T11380C C12885T C14408T A23403G G25563T C26151T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481774
 2020-05-14 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CD06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1400A C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481867
 2020-05-14 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CD33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5392T C14408T A23403G G24959T G27260K GGG28881AAC C29013T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481936
 2020-05-14 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CD7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482071
 2020-05-14 2020-07-03
 United Kingdom hCoV-19/England/HECH-259A079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2005T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482431
 2020-05-14 2020-07-03
 United States hCoV-19/USA/OR-PROV-183/2020
 C241T C1059T C3037T C14408T C18086T A23403G G25563T A26528T A28492T

EPI_ISL_482432
 2020-05-14 2020-07-03
 United States hCoV-19/USA/OR-PROV-184/2020
 C241T C280T C3037T C6027T C11563T C14408T C18877T A23403G G24550A G25563T

EPI_ISL_482433
 2020-05-14 2020-07-03
 United States hCoV-19/USA/OR-PROV-185/2020
 C241T T568A C3037T C14408T G20980A A23403G

EPI_ISL_482434
 2020-05-14 2020-07-03
 United States hCoV-19/USA/OR-PROV-186/2020
 C241T C3037T C12880T C14408T G20980A A23403G

EPI_ISL_482435
 2020-05-14 2020-07-03
 United States hCoV-19/USA/OR-PROV-187/2020
 C241T A2161G C3037T G11243T C14408T C16376T C18877T A23403G G25563T

EPI_ISL_483327
 2020-05-14 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0726-IPL/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T A16474G G18679A A20268G G21204T A23403G C28854T C28887T

EPI_ISL_483398
 2020-05-14 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0850-NBG/2020
 ATTAA1- C241T C1059T C3037T C10319T C14408T C21214T A23403G G25563T C27964T C29627T

EPI_ISL_483399
 2020-05-14 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0852-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T T7481A C10319T T12913A C14408T C21789T A23403G G25563T C27964T

EPI_ISL_483401
 2020-05-14 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0854-NBG/2020
 AT1- T13C C241T C1059T C3037T TATTGAAGTGAATAGTTT3331- C10319T C14408T C17304T C18348T G18697A A23403G G25563T C27964T G29744A AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_483402
 2020-05-14 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0855-NBG/2020
 ATT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T

EPI_ISL_484267
 2020-05-14 2020-07-08
 United Kingdom hCoV-19/England/NORT-2962DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4223T C8947T C14408T A23403G G27750T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486283 MT750456
 2020-05-14 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C337T C379A C1059T C3037T C14408T A23403G G25563T

EPI_ISL_488873
 2020-05-14 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2005T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489092
 2020-05-14 2020-07-14
 United Kingdom hCoV-19/England/NORT-29272A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8042A G10097A G10642T C14408T C16616T A23403G C23731T C25714T G28580T GGG28881AAC G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489110
 2020-05-14 2020-07-14
 United Kingdom hCoV-19/England/NORT-292757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8042A G10097A G10642T C14408T C16616T A23403G C23731T C25714T G28580T GGG28881AAC G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489117
 2020-05-14 2020-07-14
 United Kingdom hCoV-19/England/NORT-29271B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C2306T C3037T A14061G C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492030
 2020-05-14 2020-07-18
 Bangladesh hCoV-19/Bangladesh/CHRF_0019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T432C C1758Y C3037T G4201T A7483C C12369T C14408T G20438T A23403G C26527Y C28312T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867W

EPI_ISL_492857
 2020-05-14 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C0F31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3263G C9474T C14408T C21691T A23403G C25047T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492924
 2020-05-14 2020-07-20
 United Kingdom hCoV-19/England/NORT-28C538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C17463T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492926
 2020-05-14 2020-07-20
 United Kingdom hCoV-19/England/NORT-28C40E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G C7528Y G10097A C10369T C11518Y C14408T G19780R G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492951
 2020-05-14 2020-07-20
 United Kingdom hCoV-19/England/NORT-28C565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493712
 2020-05-14 2020-07-21
 United Kingdom hCoV-19/England/SHEF-CD755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7438C G10097A C14408T G21624T A23403G C23731T C26028T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493926
 2020-05-14 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G T26972C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493927
 2020-05-14 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G T26972C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493928
 2020-05-14 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T G29543C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493929
 2020-05-14 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14636T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494553 MT856688
 2020-05-14 2020-07-22
 United States SARS-CoV-2/human/USA/SC-USC-PRG467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6696T C10319T C14408T C19170T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494666
 2020-05-14 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1096G C3037T C14408T G14874T C18877T A23403G G25563T

EPI_ISL_495292
 2020-05-14 2020-07-22
 India hCoV-19/India/CCMB_OM5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T A23403G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495293
 2020-05-14 2020-07-22
 India hCoV-19/India/CCMB_OM6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T C17678T A23403G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495294
 2020-05-14 2020-07-22
 India hCoV-19/India/CCMB_OM6_ONT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_495295
 2020-05-14 2020-07-22
 India hCoV-19/India/CCMB_OM7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4354A C6026T C6573T C14408T A23403G C25528T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495296
 2020-05-14 2020-07-22
 India hCoV-19/India/CCMB_OM8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4276T G4354A C6026T C6573T C14408T A23403G C25528T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495704 MT821571
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1254/2020
 ATT1- C241T A2161G C3037T C4993T C14408T A15593G C16376T C18877T A23403G G25563T T28861C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495706 MT821549
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1256/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C24863T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_495708 MT821756
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1258/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A20724T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495737 MT821728
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1287/2020
 AT1- C241T C1059T C3037T C14408T A20724T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495738 MT821730
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1288/2020
 AT1- C241T C1059T C3037T C14408T A20724T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495739 MT821737
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1289/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A20724T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495740 MT821702
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1290/2020
 ATTAAAG1- C241T C1059T C3037T C14408T A20724T C21855T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495744 MT821542
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1294/2020
 ATTAAAGGTTTA1- C241T C3037T A12410G G12832T C14408T G19384A T19632A T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495745 MT821567
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1295/2020
 ATTAAAGG1- C241T C3037T C6606T A12410G G12832T C14408T G19384A T19632A T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495749 MT821760
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1299/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_495750 MT821669
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1300/2020
 ATTAAAGG1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495751 MT821624
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1301/2020
 AT1- C241T C3037T A4197G C14408T G16813A A23403G G24368C T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495752 MT821588
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1302/2020
 ATT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495753 MT821618
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1303/2020
 AT1- C241T C3037T A4197G C14408T G16813A A23403G G24368C T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495754 MT821754
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1304/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495755 MT821543
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1305/2020
 AT1- C241T C1060T C3037T A10479G C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_495758 MT821551
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1308/2020
 AT1- C241T C1060T C3037T C9319T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495759 MT821559
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1309/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G26428T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495760 MT821761
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1310/2020
 A1- C241T A2161G C3037T C7945T A12922G C14408T C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_495773 MT821603
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1323/2020
 AT1- C241T A2161G C3037T C4993T A10323G C14408T A15593G C16376T C18877T A23403G G25563T T28861C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_495774 MT821653
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1324/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C4993T A10323G C14408T A15593G C16376T C18877T A23403G G25563T T28861C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495781 MT821766
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1331/2020
 AT1- C241T C1204T C1441T G1747A C3037T C14408T C16289T C17745T A23403G G25429T C28677T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495791 MT821598
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1341/2020
 ATTAAAG1- C241T C1059T C3037T T13216C C14408T A23403G G24328C C24382T G25563T A26562G C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495792 MT821547
 2020-05-14 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1342/2020
 AT1- C241T C1059T C3037T T13216C C14408T A23403G G24328C C24382T G25563T A26562G C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_498127
 2020-05-14 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2782T C3037T C3373A C9733T C10376T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498687 MT806884
 2020-05-14 2020-07-27
 United States SARS-CoV-2/human/USA/UT-04209/2020
 C241T C1059T G1843T C3037T A7870G C14408T A23403G G25409C G25563T G25776T T27252C C27549T C27964T C28093T

EPI_ISL_500973
 2020-05-14 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1067F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420Y C3037T C8802Y C10594Y C14408T C14741Y G17325R A17342R A23403G G25429T A26200R GGG28881RRS CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500983
 2020-05-14 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-10677D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10376T C14408T G18148A A23403G C26208T C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501006
 2020-05-14 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2141Y C3037T C10376T C11259T C14408T A23403G C26208T C26681T C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501007
 2020-05-14 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C17004T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501011
 2020-05-14 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798K C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501017
 2020-05-14 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-10676E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9037C C11514T C14408T C23185T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501019
 2020-05-14 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-10682F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501043
 2020-05-14 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5433R G8861R C14408T C14676T C18348T A20268G A23403G G25298K C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501054
 2020-05-14 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-10675F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501057
 2020-05-14 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C17004T G18534K A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501060
 2020-05-14 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1068A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T G1944R C3037T C14408T T20799C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501066
 2020-05-14 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-10678C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10376T C14408T G18148A A23403G C26208T C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501159
 2020-05-14 2020-07-30
 United States hCoV-19/USA/WA-UW-9291/2020
 ATTAAA1- T10G T13A C241T C1059T C3037T C7564T T8883C TT8885AA T10554A G11083T AGG13512TTA TA14222GC C14408T A23403G G25563T G28376T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_507103
 2020-05-14 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D4CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T G22992C A23403G C26534T C27970A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507257
 2020-05-14 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII14570V/2020
 AT1- C241T C3037T C14408T A16829G T21644C A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507259
 2020-05-14 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15065S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_508392
 2020-05-14 2020-08-04
 India hCoV-19/India/IK68/2020
 ATTAAAGGTT1- C241T C527T C900T C3037T A13498G C14408T A23403G G29868A

EPI_ISL_508393
 2020-05-14 2020-08-04
 India hCoV-19/India/IK69/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C527T C900T C3037T A13498G C14408T A23403G G29868A

EPI_ISL_508395
 2020-05-14 2020-08-04
 India hCoV-19/India/IK71/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T G3351T G4444T A5336G C9491T C14408T C18568T A23403G C26936T G29868A

EPI_ISL_508396
 2020-05-14 2020-08-04
 India hCoV-19/India/IK72/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C6196T C14408T G20002T A21958G A23403G G29447T G29868A

EPI_ISL_508397
 2020-05-14 2020-08-04
 India hCoV-19/India/IK73/2020
 ATTAAAGGTTTA1- C241T G1772A C3037T C8127T G8863A G9817A C12141A C14408T G15451A G21986A G22199T G22343A A23403G T25766C G29868A

EPI_ISL_509102
 2020-05-14 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C218T C241T C3037T C11563T C14408T C18877T GAA20263ATT A23403G G24550A G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_509103
 2020-05-14 2020-08-05
 United States hCoV-19/USA/WA-OHSU-0327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T G29648T

EPI_ISL_509838 MT846522
 2020-05-14 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T C18312T T19839C A23403G C23707T G25249T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509948 MT846635
 2020-05-14 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4403A C4940A C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510604
 2020-05-14 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2266/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T T29867C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_510605
 2020-05-14 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2267/2020
 AT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T T25895C G29179T G29779T AAA29901-

EPI_ISL_510607
 2020-05-14 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2269/2020
 ATTAAAGGT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T T25895C G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510608
 2020-05-14 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2270/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510614
 2020-05-14 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T T25895C G29179T G29779T

EPI_ISL_510829
 2020-05-14 2020-08-07
 Sweden hCoV-19/Sweden/20-51536/2020
 C241T C1059T C3037T C14408T C15810T A23403G G24368T G25563T

EPI_ISL_510833
 2020-05-14 2020-08-07
 Sweden hCoV-19/Sweden/20-51579/2020
 G61T C241T C1059T C3037T G13926T C14408T C18714T A23403G G24368T G25563T

EPI_ISL_511904
 2020-05-14 2020-08-10
 India hCoV-19/India/IK70/2020
 ATTAAAGGTTTATACCTT1- C106T C241T C1968T C3037T C14408T T22219C A23403G G29868A

EPI_ISL_512195
 2020-05-14 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1816/2020
 ATTA1- C241T C1457T C3037T C7119T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_512198
 2020-05-14 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1827/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1457T C3037T C7119T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_515415
 2020-05-14 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0151/2020
 AT1- C241T C3037T G3518T C9615T C13536T C14408T A23403G T29672C

EPI_ISL_515416
 2020-05-14 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0152/2020
 ATTAAAGGTTTATACCTTCC1- C241T C313T C2147T C3037T C12008T C14408T G21099T A23403G G23628T GGG28881AAC C29627T

EPI_ISL_515417
 2020-05-14 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0153/2020
 ATTA1- C241T C379A C1059T C3037T G9652T G11083T C11102T CC14407TT A23403G G25563T C28185A

EPI_ISL_515418
 2020-05-14 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0154/2020
 ATTA1- C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T

EPI_ISL_515419
 2020-05-14 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0155/2020
 ATT1- C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T

EPI_ISL_515420
 2020-05-14 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0156/2020
 ATT1- C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T

EPI_ISL_515421
 2020-05-14 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_515966
 2020-05-14 2020-08-20
 India hCoV-19/India/nimh-19184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- T606C C884T G1397A G8653T G11083T G12167A A19073G T22276C G27915T G28300T T28688C C28868T C29077T G29742T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_515967
 2020-05-14 2020-08-20
 India hCoV-19/India/nimh-19188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A178G T606C C884T G1397A G8653T G11083T G12167A A19073G C25350T G27915T G28300T T28688C C28868T C29077T G29742T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_520674
 2020-05-14 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L2005036025/2020
 C241T C3037T A6466G C14408T A22374G A23403G G28396A

EPI_ISL_520685
 2020-05-14 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290166145/2020
 C241T C3037T C12672T C14408T A23403G GGG28881AAC

EPI_ISL_520686
 2020-05-14 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290201241/2020
 C241T A761G C3037T A6466G C14408T C23929T C28868T C29769T

EPI_ISL_522337
 2020-05-14 2020-08-25
 United States hCoV-19/USA/UT-04291/2020
 A1- C241T T833C C1059T C3037T C6541Y G7675T C11379Y C14408T A17153G G21142A A22320G A23403G G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_523183
 2020-05-14 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C15981T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523184
 2020-05-14 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523204
 2020-05-14 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5259T C14408T C19170T G19509A A23403G C26313T GGG28881AAC G29628T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523367
 2020-05-14 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T C14408T A23403G A24862G A27674T G28703T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523442
 2020-05-14 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12747T C14408T A23403G C26895T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524009
 2020-05-14 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-15320V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T T1107C C3037T G3281T C4755T C14178T C14408T A23403G C25603T GGG28881AAC G28899T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524113
 2020-05-14 2020-08-27
 United States hCoV-19/USA/UT-08318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C96T C241T C3037T C5184T C14408T A23403G C26256T C29668T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524122
 2020-05-14 2020-08-27
 United States hCoV-19/USA/UT-08331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G25563T C27964T G28373T A28864C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524129
 2020-05-14 2020-08-27
 United States hCoV-19/USA/UT-08341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524134
 2020-05-14 2020-08-27
 United States hCoV-19/USA/UT-08348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A22193G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524905
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C5184T C6525T G8017T C14408T A23403G C26256T C29668T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524926
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C5184T C5416T G8017T C14408T A23403G C26256T C29668T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524933
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524958
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C442T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525048
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T A12110G C14408T C14657A G15908A A22320G G22343C A23403G G24535T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525074
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T A716G C2094T C2416T C3037T C14408T A15596G C15720T A23403G G25563T C25792T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525079
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C12774T C14408T A22320G G22349A A23403G G25244T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525219
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T C18877T G19816T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525225
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C14408T G15908A A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525227
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C12774T C14408T A22320G G22349A A23403G G25244T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525229
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C875T C1059T C3037T A7870G G13813T C14408T A23403G G25563T C27964T C28093T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525237
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T A716G C2094T C2416T C3037T C14408T C15579T A23403G T24349C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525244
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G3518T C13536T C14408T G19480T A23403G T27384C C29200T T29672C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525248
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T G3563T C6541T C11379T C14408T C15026T A22320G A23403G G25563T C27964T G28373T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525262
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C2704T C2939T C3037T T11698C G12395A C14408T G16935T A23403G G25971T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525263
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C5884T G7936A C13487T C14408T C16733T C16887T C22858T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525270
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C442T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525299
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T499C T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525304
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T A3841T A6512C C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525326
 2020-05-14 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C11379T C14408T C17125T T19839C A22320G A23403G G25523T G25563T C27964T T29685G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527700
 2020-05-14 2020-09-04
 United States hCoV-19/USA/MN-CDC-6315/2020
 C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527703
 2020-05-14 2020-09-04
 United States hCoV-19/USA/MN-CDC-6332/2020
 C241T C1059T C3037T C3373T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527704
 2020-05-14 2020-09-04
 United States hCoV-19/USA/MN-CDC-6335/2020
 C241T C1059T C3037T C3373T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528704
 2020-05-14 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/54/2020
 C241T C3037T G5924A C14408T T21775G A23403G GGG28881AAC

EPI_ISL_528706
 2020-05-14 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/56/2020
 C241T C3037T G5924A C14408T T21775G A23403G GGG28881AAC

EPI_ISL_528995
 2020-05-14 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE46424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A6869W C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_528996
 2020-05-14 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE46428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T A6869W C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_528997
 2020-05-14 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE46429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A6866W A6869T C14408T A23403G C29370Y CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_528998
 2020-05-14 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE46433/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T A6869W C14408T C18747Y A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_528999
 2020-05-14 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE46435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A6866W A6869T C14408T A23403G A24582W ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_529000
 2020-05-14 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE46436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A6248M A6869W A11991R C14408T A23403G G25563K G28001K GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529001
 2020-05-14 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE46439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A6204R A6869T C14408T C21789Y A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_530096
 2020-05-14 2020-09-10
 Spain hCoV-19/Spain/MD-R19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T A23403G C26088T T28144C A29647G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_533345
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-544D9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15237T A23403G G25471C GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533346
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-545EF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533350
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-5443D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4288T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533351
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-546081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533356
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-543190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4015G C9561T T13672C C14408T A21866G A23403G C26895T C28045T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533357
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-5458A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A G5150T C14408T C14688T T21670G A23403G GGG28881AAC G28908T C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533360
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-542F97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3838T C4586T T5449C G10097A C12073T C14408T G17944T C19018T A23403G C23731T C26195T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533361
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5460BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29717A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533362
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-543A95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T G11083T C14408T A23403G A26927G A26981T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533363
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-543075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T A28858G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533364
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-544733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7564T C8683T C12400T C14408T A20268G A23403G T25202K C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533366
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-545CD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6926T C14408T C21811T A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533370
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5475AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C3037T C6926T G8371T C14408T G17722T C21811T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533376
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-5484A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A G12163A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533377
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5477A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12141A C14408T A23403G GGG28881AAC G29513A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533380
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-546713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C186T C241T C3037T T9070C G10097A T13216G G13564A C14408T G20014T C21575T A23403G C23731T T24887C T25525C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533390
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5476CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T C3373A C14408T C14688T A23403G G27706T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533391
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-549710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C13329T C14408T A23403G G25644T A25657G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533397
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5482C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C13329T C14408T A23403G G25644T A25657G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533401
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54724E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T G11083T C14408T A23403G A26927G A26981T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533405
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5474EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2385C C3037T T8305C C14408T C23277T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533407
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5473D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T C18463T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533409
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-547378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A17986G A23403G G24095T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533414
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-548052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C1473T C3037T C3373A C9714T G9805T C14408T C14688T C16049T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533416
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-548043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1560T C3037T C6541T C14408T T16851C C19024A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533417
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-548CD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1389G C1912T C3037T C3045T C14408T C18171Y A23403G T25248C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533420
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-547C8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14471T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533421
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-548007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G GAT27382CTC G28845T GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533426
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54723F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A17986G A23403G G24095T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533428
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5470EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T G11083T C14408T A23403G A26927G A26981T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533430
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54818C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3838T C4586T T5449C G10097A C14408T G17944T C19018T A23403G C23731T C26195T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533431
 2020-05-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-548B8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534330
 2020-05-14 2020-09-13
 Spain hCoV-19/Spain/MD-HLP-105-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3045T C14408T C15141T C20259T A20268G A23403G T27205- C29686T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534960
 2020-05-14 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4548/2020
 C241T C3037T C14408T G19072T C21635A A23403G GGG28881AAC A29879M AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_542822
 2020-05-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2228C C3037T C14408T C16163T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542823
 2020-05-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5230T C14408T A23403G G25563T C28236T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542830
 2020-05-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T T20037C A23403G G25563T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542831
 2020-05-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C7765T C8334T C8782T C8950T G10642T G12478A T18736C T19713C A23145G C24034T G26107A T26729C G28077C T28144C C28896G C29451T G29554T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542862
 2020-05-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5826T C14408T A23403G T27984C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542872
 2020-05-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542897
 2020-05-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-1908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G26217T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545075
 2020-05-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-2030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20578T A23403G GGG28881AAC G29224T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545226
 2020-05-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-2288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545228
 2020-05-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-2291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545237
 2020-05-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-2307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T3618C C9180T G11083T C14408T A23403G G25563T C26110T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559686
 2020-05-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-487A69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635Y C1684T C3037T C14408T C22458T A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559699
 2020-05-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-4867CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G614S G2888K C3037T G3250K G6309K C12049T C14408T G16188K T17497C A23403G G24740K C28698Y GGG28881AAC G28916T A29319R T29341Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559702
 2020-05-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-4868E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G A6211G A8659G C14408T C19488T C20719T A23403G C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559713
 2020-05-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-45ED08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6359A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559745
 2020-05-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-45EAD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2142T C3037T C14408T C18814T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561021
 2020-05-14 2020-09-30
 Gambia hCoV-19/Gambia/GC19-1503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5515T C13694T C14408T A23403G C28310T GGG28881AAC C29025T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

LR877428
 2020-05-14 2020-08-17
 Poland covid_hub_pl_ibch_0051
 

MT810867
 2020-05-14 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1573-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1096G C3037T C14408T G14874T C18877T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811340
 2020-05-14 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0726-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T A16474G G18679A A20268G G21204T A23403G C28854T C28887T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811753
 2020-05-14 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0850-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T C21214T A23403G G25563T C27964T C29627T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811755
 2020-05-14 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0852-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T7481A C10319T T12913A C14408T C21789T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811757
 2020-05-14 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0854-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T TATTGAAGTGAATAGTTT3331- C10319T C14408T C17304T C18348T G18697A A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811758
 2020-05-14 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0855-NBG/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C10319T C14408T A23403G G25563T C27964T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT967951
 2020-05-14 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6315/2020
 C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

MT967953
 2020-05-14 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6332/2020
 C241T C1059T C3037T C3373T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT967954
 2020-05-14 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6335/2020
 C241T C1059T C3037T C3373T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452873
 2020-05-15 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AFCB3/2020
 C241T C3037T C14408T A23403G G23868T G25429T GTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTC27703-

EPI_ISL_452874
 2020-05-15 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1AFCD1/2020
 C241T C3037T C14408T A23403G G23868T G25429T GTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTC27703-

EPI_ISL_452944
 2020-05-15 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0B58/2020
 C241T C3037T C14408T A23403G C26447T G27281T GGG28881AAC

EPI_ISL_452979
 2020-05-15 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B17BD/2020
 C241T C1912T C3037T C4002T G9479T G10097A C13536T C14408T A23403G C23731T T24063C A25948G GGG28881AAC

EPI_ISL_453177
 2020-05-15 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB4993/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G

EPI_ISL_453178
 2020-05-15 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB4995/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G T26972C

EPI_ISL_453179
 2020-05-15 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB4998/2020
 C241T C3037T A4269G C14408T A20268G A23403G GG26466TC C28854T G29291A

EPI_ISL_453180
 2020-05-15 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB5011/2020
 C241T T967C G970A C3037T C14408T C16708T A20268G G22225T A23403G T29753C

EPI_ISL_453182
 2020-05-15 2020-05-27
 United Kingdom hCoV-19/Scotland/EDB5020/2020
 C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_453657
 2020-05-15 2020-05-27
 United Kingdom hCoV-19/England/NOTT-1113C6/2020
 C241T C1862T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_453658
 2020-05-15 2020-05-27
 United Kingdom hCoV-19/England/NOTT-1113D5/2020
 C241T C2434T C3037T A12618C G13690A C14408T A23403G GGG28881AAC

EPI_ISL_459893
 2020-05-15 2020-06-04
 Luxembourg hCoV-19/Luxembourg/LNS0681882/2020
 C241T C337T C2416T C3037T G8371T G11083T C13860T C14408T G16968A A23403G A25472C G25563T A28860T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_459899
 2020-05-15 2020-06-04
 Luxembourg hCoV-19/Luxembourg/LNS5507695/2020
 C241T C337T C2416T C3037T G8371T G11083T C13860T C14408T G16968A A23403G A25472C G25563T A28860T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_459900
 2020-05-15 2020-06-04
 Luxembourg hCoV-19/Luxembourg/LNS6387933/2020
 ATTAAAGG1- C241T C337T C2416T C3037T G8371T G11083T C13860T C14408T G16968A A23403G A25472C G25563T A28860T AAAAAAAAAAA29893-

EPI_ISL_460574
 2020-05-15 2020-06-05
 United States hCoV-19/USA/MI-MDHHS-SC20526/2020
 C241T C3037T C14408T A23403G C25609T G29715A

EPI_ISL_461224
 2020-05-15 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C6026T C6633T C11109T C14408T G18180T C21638T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461894
 2020-05-15 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1115B1/2020
 C241T A1103T C3037T C14408T A20268G A23403G A27156G

EPI_ISL_462020
 2020-05-15 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C590C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G247A C3037T G10097A C11750T C11832T C13381T C14408T A23403G C23731T A23992T C25350T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462065
 2020-05-15 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CDD08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21614T A23403G C27928T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462078
 2020-05-15 2020-06-06
 United Kingdom hCoV-19/England/SHEF-D1606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C11750T C11832T C13381T C14408T A23403G C23731T A23992T C25350T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462427
 2020-05-15 2020-06-08
 Singapore hCoV-19/Singapore/309/2020
 C593T C1812T C2662Y C6310A C6312A C9534T G11083T C13730T C19524T C23185T C23929T C25603T C28311T G29828T AAAAAAAAAAAA29892-

EPI_ISL_463078
 2020-05-15 2020-06-09
 India hCoV-19/India/ILSCV20557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1094C C3037T C8917T C14408T C18129T A23403G GGG28881AAC GTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29690-

EPI_ISL_467948 MT712861
 2020-05-15 2020-06-15
 United States SARS-CoV-2/human/USA/CA-IGI-0031/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C5144T G6446T C8078T C13665T C14408T A20755C C20946T A23403G G25563T

EPI_ISL_468462 MT628190
 2020-05-15 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1516/2020
 C241T C1059T C3037T C4795T C11916T C14408T G15086A C15277T C18998T A23403G G25563T G29402K G29540A

EPI_ISL_469060
 2020-05-15 2020-06-17
 Sweden hCoV-19/Sweden/20-14696/2020
 C241T C703T C1059T C2062T C3037T C14408T C15738T G22205C A23403G G24368T G25563T T29344A C29836T

EPI_ISL_469061
 2020-05-15 2020-06-17
 Sweden hCoV-19/Sweden/20-14697/2020
 C241T C703T C1059T C2062T C3037T C14408T C15738T G22205C A23403G G24368T G25563T T29344A C29836T

EPI_ISL_469062
 2020-05-15 2020-06-17
 Sweden hCoV-19/Sweden/20-14785/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29705T

EPI_ISL_469310
 2020-05-15 2020-06-18
 United Kingdom hCoV-19/England/NORT-28C705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4656R C4901T G10097A C14408T A23403G C23731T T27285C ATTTGCTTTTGCTT27579- GGG28881AAC AGTGTAC29756- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469315
 2020-05-15 2020-06-18
 United Kingdom hCoV-19/England/NORT-28C714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G23593T GGG28881AAC C29675Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469325
 2020-05-15 2020-06-18
 United Kingdom hCoV-19/England/NORT-28C7AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9474T C14408T C17463T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469336
 2020-05-15 2020-06-18
 United Kingdom hCoV-19/England/NORT-28C6BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C5412Y T11522G T12304C C14408T C14786T A23403G A27899G GGG28881AAC G29477K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469344
 2020-05-15 2020-06-18
 United Kingdom hCoV-19/England/NORT-28C5DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3433T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469355
 2020-05-15 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BC37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469358
 2020-05-15 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BCA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1857T C3037T C6070T C6255T C14408T A22606T A23403G G23984A GGG28881AAC C29109T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469379
 2020-05-15 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BCBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5148T C7851T C11530T C14408T C20233T A23403G G25563T G29462K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469390
 2020-05-15 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BCDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469408
 2020-05-15 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BC82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T C26776T G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469440
 2020-05-15 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BC64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T G27967K G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469449
 2020-05-15 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BCEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469475
 2020-05-15 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12C577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469833
 2020-05-15 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B1CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C7843T C9438T C14408T T15254C T16062C A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471899
 2020-05-15 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20878/2020
 C241T C3037T G4510T C14408T T22690C A23403G C25665Y G28325T AAAAAAAAA29895-

EPI_ISL_471901
 2020-05-15 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20880/2020
 C241T C1059T T2815C C3037T C14408T A23403G G25563T

EPI_ISL_471902
 2020-05-15 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20881/2020
 C241T C1059T C3037T C4084T C9180T G11083T C13554T C14408T A23403G G25563T C25976A A29903-

EPI_ISL_471905
 2020-05-15 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20884/2020
 C241T C1059T G1820R C3037T C9438T C9532T C14408T A23403G G25563T

EPI_ISL_472740
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15D689/2020
 C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C AAAAAAA29897-

EPI_ISL_472746
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15D874/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C14741T C22997T A23403G T24923C G25459T

EPI_ISL_472762
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15DB6C/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C10376T C14408T G18583T A23403G G23868T G24368T G25563T G27390C G29773T

EPI_ISL_472805
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E327/2020
 A1- C241T A489G C3037T T5465C G6387A C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC C29750T

EPI_ISL_472821
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E59A/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C6500A A13953G C14408T C20759T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_472823
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E61F/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C14741T C22997T A23403G T24923C G25459T

EPI_ISL_472834
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15E80A/2020
 ATT1- C241T C3037T T5573C C6380T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC C29250T T29607C AAAAAAA29897-

EPI_ISL_472895
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1600D0/2020
 AT1- C241T C3037T C4069Y C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_472904
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1601BF/2020
 ATTAA1- C241T C3037T C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_472927
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1603C8/2020
 ATTAAAGGT1- C241T C3037T C5822Y C9438T C14408T A23403G G25337K G26589T GGG28881AAC G29777T

EPI_ISL_473015
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160B1B/2020
 ATTA1- C241T C3037T C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_473039
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160CDC/2020
 C241T C3037T C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_473266
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163231/2020
 ATTA1- C241T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_473343
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F882/2020
 C241T C3037T T11164G C14408T G21538T G22332A A23403G G25429T TGG26465-

EPI_ISL_473394
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FCA4/2020
 G210T C241T A1103T C3037T C14408T A20268G C22482T A23403G A27156G

EPI_ISL_473427
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/England/BIRM-60FD4/2020
 C241T C3037T G10097A C14408T A23403G C23731T C27538A G28580T GGG28881AAC

EPI_ISL_473896
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6164/2020
 C241T C3037T C10798A C13862T C14408T C19524T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473897
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6165/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473898
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6167/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473899
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6168/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473900
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6171/2020
 C241T C1059T C3037T C4999T C13730T C14408T A23403G G25563T

EPI_ISL_475241
 2020-05-15 2020-06-23
 United Kingdom hCoV-19/England/PORT-2CFA76/2020
 C241T C3037T C9857T C14408T C16887T C21292T A23403G A26530G

EPI_ISL_476079 LR824480 LR861051
 2020-05-15 2020-06-25
 Switzerland 140000
 C241T C506Y C584Y C1059T T1295Y C1572Y G2001S C2610Y G2755C C3037T G3443S A4834W A5257W C5622Y C6504Y G8793K C10170Y C11844Y G12331R A13300W G13960K A14256W C14408T T14460Y C15479Y C15890Y C16084Y T16116Y T16287Y A16840W G17259T A17653W C18687T A18749M C19269Y C21658Y T21959W T22516W C23117Y A23403G C23422Y C25047T G25563T C26111Y C26340Y C27536Y A28627R C28905Y T29148W C29284Y

EPI_ISL_476080 LR824481 LR861102
 2020-05-15 2020-06-25
 Switzerland 140001
 C241T C1912M C3037T C14408T C15738Y C19170T G19509A C21370Y C21998T C22347S A23403G GGG28881AAC A28911R

EPI_ISL_476081 LR824488 LR861104
 2020-05-15 2020-06-25
 Switzerland 140002
 C241T C3037T G3056K A3672R G3863R C4290M C4921Y T7057Y G7850K G8105K C8157Y T9640Y C10259Y C10726Y C13968Y C14408T G15380K G15958T C17172Y C17541Y A17916R G18816K A19298W T19487W G21101K C21260Y A22401M A22488M C22571Y T23333Y A23403G G26317K C26801T T26921Y T26997Y C27015Y G28625K GGG28881AAC G29260T G29736T

EPI_ISL_476082 LR824484 LR861105
 2020-05-15 2020-06-25
 Switzerland 140003
 C241T C635Y A1461G C3037T C5730T C14408T C22347S T22417Y C22452Y A23403G GGG28881AAC

EPI_ISL_479533
 2020-05-15 2020-06-30
 India hCoV-19/India/NIV-31191/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T A20707G A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479584
 2020-05-15 2020-06-30
 Singapore hCoV-19/Singapore/506/2020
 C1213T C6310A C6312A G11083T A12358T C13730T C18888T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_479585
 2020-05-15 2020-06-30
 Singapore hCoV-19/Singapore/507/2020
 C6310A C6312A G11083T C13730T C19524T C21997T C23929T C23996T G25281A C27600T C28311T C29509T AAAAAAAAAAAA29892-

EPI_ISL_479586
 2020-05-15 2020-06-30
 Singapore hCoV-19/Singapore/508/2020
 G3371T C6310A C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_481565
 2020-05-15 2020-07-03
 Finland hCoV-19/Finland/15MAY16S13/2020
 C241T C1059T C3037T C14408T G21786T A23403G G24368T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_481819
 2020-05-15 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12CD51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482099
 2020-05-15 2020-07-03
 United Kingdom hCoV-19/England/HECH-259A02E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3760Y G10097A C14408T C14649Y A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482118
 2020-05-15 2020-07-03
 United Kingdom hCoV-19/England/HECH-2599FF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2005T C3037T C14408T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_482436
 2020-05-15 2020-07-03
 United States hCoV-19/USA/OR-PROV-188/2020
 C241T C3037T C5184T C5416T G8017T C14408T A23403G C26256T C29668T

EPI_ISL_483279
 2020-05-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0649-SAN/2020
 C241T C1059T C3037T T5182C C11916T C14408T C18998T T21075C A23403G G25563T G25947C G27703T G29540A

EPI_ISL_483292
 2020-05-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0673-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T T5182C C11916T C14408T C18998T T21075C A23403G G25563T G25947C G27703T G29540A

EPI_ISL_484452
 2020-05-15 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C4D98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484697
 2020-05-15 2020-07-08
 Belgium hCoV-19/Belgium/ULG-10208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2773T C3037T G3328T C12525T C14408T G17193T C18348T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484698
 2020-05-15 2020-07-08
 Belgium hCoV-19/Belgium/ULG-10209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2782T C3037T C3373A C9733T C10376T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486284
 2020-05-15 2020-07-10
 United States hCoV-19/USA/CA-CZB-2039/2020
 A1- C241T C337T C379A C1059T C3037T T3877K C14408T A23403G G25563T

EPI_ISL_486285 MT750457
 2020-05-15 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2041/2020
 A30R C241T C337T C379A C906Y C1059T C3037T G6036T C14408T A23403G G25563T G28562R

EPI_ISL_486286 MT750458
 2020-05-15 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2042/2020
 A1- A30R C241T C1059T G1413A C3037T C14408T C22502A A23403G G25563T C29743T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486340 MT750495
 2020-05-15 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T C2706T C3037T C11916T C14408T C18998T C19145T T20256Y A23122R A23403G G25563T T25902W T25908W G25913S G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486342
 2020-05-15 2020-07-10
 United States hCoV-19/USA/CA-CZB-2109/2020
 AT1- A30R C241T C1059T C2706T C3037T C11916T C14408T C18998T C19145T A23403G G25563T G29540A

EPI_ISL_488039
 2020-05-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-296313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4267G C10833T G13370S C14408T T15723C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488040
 2020-05-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-296234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6537A C11001T C13862T C14408T A23403G A25448G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488044
 2020-05-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-296243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6537A C11001T C13862T C14408T A23403G A25448G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488049
 2020-05-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-296322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7764Y G10097A C14408T A23403G C23731T C25549Y G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489084
 2020-05-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-292EBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4693C G10097A C14408T G15664T A23403G C23731T C25714T G27087T A27617G G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489104
 2020-05-15 2020-07-14
 United Kingdom hCoV-19/England/NORT-292EDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C2306T C3037T A14061G C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489817 MT757094
 2020-05-15 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T490A C3177T C6040T C8782T A10874G G12478A T18736C C24034T T26729C C27804T G28077C T28144C A29700G AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_489819 MT757096
 2020-05-15 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- T490A C3177T C6040T C8782T A10874G G12478A T14949C T18736C C24034T T26729C C27804T G28077C T28144C A29700G TTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29822-

EPI_ISL_489823 MT757100
 2020-05-15 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0414/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C10036T C10188T C12534T C14408T G22484T A23403G G25563T C27964T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_489827 MT757104
 2020-05-15 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0418/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C1302T C3037T T3172C C14134T C14408T A23403G C23525T G25563T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_490745
 2020-05-15 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C1063T C3037T C14408T G22627A A23403G C27849T G28628T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_491138
 2020-05-15 2020-07-16
 Oman hCoV-19/Oman/C-22988/2020
 ATTAAAGGTTTATACCTTC1- CC20TG GG23AC C241T G1944A C3037T G10265A C14408T C16293T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491973
 2020-05-15 2020-07-18
 Oman hCoV-19/Oman/205036082/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G1944A C3037T G10265A G11083T A11781G C14408T C16293T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491974
 2020-05-15 2020-07-18
 Oman hCoV-19/Oman/205036136/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C4897T G6421T C14408T C20451T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_493617
 2020-05-15 2020-07-21
 United Kingdom hCoV-19/England/PORT-2CFA3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9857T C14408T C16887T C21292T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493620
 2020-05-15 2020-07-21
 United Kingdom hCoV-19/England/PORT-2CFA67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9857T C14408T C16887T C21292T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493621
 2020-05-15 2020-07-21
 United Kingdom hCoV-19/England/PORT-2CFA94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9857T C14408T C16887T C21292T C23277T A23403G A26530G G28086T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493622
 2020-05-15 2020-07-21
 United Kingdom hCoV-19/England/PORT-2CFAB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9857T C14408T C16887T C21292T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493737
 2020-05-15 2020-07-21
 United Kingdom hCoV-19/England/SHEF-D2EC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TGGTCATGTTATGGT508- C3037T C5585A G10097A C11750T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493930
 2020-05-15 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB4989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493932
 2020-05-15 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1576C C3037T C14408T A20268G A23403G C25844T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493933
 2020-05-15 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1576C C3037T C14408T A20268G A23403G C25844T C28341T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493934
 2020-05-15 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T T2278C C3037T C7011T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493936
 2020-05-15 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493937
 2020-05-15 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1576C C3037T C14408T A20268G A23403G C25844T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495276
 2020-05-15 2020-07-22
 India hCoV-19/India/CCMB_OM10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C5700A C9693T C10815T C14408T C16626T AA21550CT A23403G GGG28881AAC G29474T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495277
 2020-05-15 2020-07-22
 India hCoV-19/India/CCMB_OM11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4354A C6573T C14408T A23403G C25528T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495278
 2020-05-15 2020-07-22
 India hCoV-19/India/CCMB_OM12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4354A C6573T C14408T A23403G C25528T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495279
 2020-05-15 2020-07-22
 India hCoV-19/India/CCMB_OM13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4354A C6573T C14408T A23403G C25528T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495280
 2020-05-15 2020-07-22
 India hCoV-19/India/CCMB_OM14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4354A C6573T C14408T A23403G A25381C C25528T T27384C GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495297
 2020-05-15 2020-07-22
 India hCoV-19/India/CCMB_OM9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C506T C3037T G4354A C6573T T10045C C14408T C21575T A23403G C25528T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495746 MT821716
 2020-05-15 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1296/2020
 AT1- C241T C1204T G1747A C3037T C14408T C16289T A23403G G25429T G29648T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_495747 MT821569
 2020-05-15 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1297/2020
 AT1- C241T C3037T C6445T C10615T C14408T G16813A C21595G A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495748 MT821605
 2020-05-15 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1298/2020
 AT1- G1401A C5002T C8782T A10785G C17747T A17858G C18060T C26322T T28144C C29367T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495768 MT821654
 2020-05-15 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1318/2020
 ATTAAA1- C241T T844G C1059T C3037T T9091C C14408T A23403G C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495769 MT821622
 2020-05-15 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1319/2020
 ATTAA1- C241T T844G C1059T C3037T T9091C C14408T C17639T A23403G C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495771 MT821637
 2020-05-15 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1321/2020
 ATTAAAGGTT1- C241T T844G C1059T C3037T T9091C C14408T A23403G C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495772 MT821711
 2020-05-15 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1322/2020
 AT1- G354A C2070T C8782T C17747T A17858G C18060T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_495775 MT821662
 2020-05-15 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1325/2020
 A1- C241T C3037T C14408T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495777 MT821650
 2020-05-15 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1327/2020
 AT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495778 MT821596
 2020-05-15 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1328/2020
 AT1- C241T C3037T A4197G C14408T G16813A A23403G T25783C C26177T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495779 MT821695
 2020-05-15 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1329/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495780 MT821585
 2020-05-15 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1330/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_495782 MT821574
 2020-05-15 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1332/2020
 AT1- C241T C3037T A7201G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495798 MT821562
 2020-05-15 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1348/2020
 ATTAAAGGTTTATA1- C241T C1060T C3037T C14408T T19839C A21845G A23403G C25614T A28100G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495802 MT821595
 2020-05-15 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1352/2020
 AT1- C241T C1059T C3037T T13216C C14408T A23403G G24328C C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496524
 2020-05-15 2020-07-24
 India hCoV-19/India/NCCS_NR1205/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A29- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC A29860- A29866G A29869-

EPI_ISL_496558
 2020-05-15 2020-07-24
 India hCoV-19/India/NCCS_NR1290/2020
 ATTAAAGGT1- A12T C241T G2436T C3037T C3634T C14408T C15324T A23403G

EPI_ISL_497877
 2020-05-15 2020-07-25
 India hCoV-19/India/NCCS_NR1445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G8371T C12885T C14408T G16912T A23403G C27213T G28300- GGG28881AAC

EPI_ISL_498128
 2020-05-15 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C16655T C17690T C18877T C20759T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498129
 2020-05-15 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2695T C3037T C5175T T11638C C14408T A23403G GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498130
 2020-05-15 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T T15225C C15928T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498131
 2020-05-15 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T T15225C C15928T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498132
 2020-05-15 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5175T T11638C C14408T A23403G GGG28881AAC C29708T G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498271
 2020-05-15 2020-07-27
 China hCoV-19/Hong Kong/HKU-200723-106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G24368T G25563T C26912T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498566
 2020-05-15 2020-07-27
 Singapore hCoV-19/Singapore/668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T G29474T ACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29749-

EPI_ISL_499396
 2020-05-15 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16912F/2020
 ATTA1- C241T T847G C2749T C3037T C6026T G11801A C14408T T19839C A23403G G25552T C27972T AG28877TC GGG28881AAC C29555T AAAAAAAAA29895-

EPI_ISL_507265
 2020-05-15 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15516S/2020
 ATTAAAGGTTTATACC1- C241T C3037T G3281T G5425T C14178T C14408T A23403G C25487T GGG28881AAC G28899T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507266
 2020-05-15 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15517S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1812T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_507267
 2020-05-15 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15518S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1107C C3037T G3281T C4755T C10507T C14178T C14408T A23403G C25603T GGG28881AAC G28899T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_507268
 2020-05-15 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15520S/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G910T C3037T C14408T A20268G A23403G C25487T C29363T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507269
 2020-05-15 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15671S/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507270
 2020-05-15 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15673S/2020
 ATTAAAG1- C241T T1107C C3037T G3281T C4755T C14178T C14408T A23403G C25603T GGG28881AAC G28899T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_507271
 2020-05-15 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15674S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507272
 2020-05-15 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15675S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1107C C3037T G3281T C4755T C14178T C14408T A23403G C25603T GGG28881AAC G28899T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508427
 2020-05-15 2020-08-04
 India hCoV-19/India/MW20/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G8371T C9907T C14408T A23403G GGG28881AAC A29385T G29868A

EPI_ISL_509106
 2020-05-15 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G T25729C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509107
 2020-05-15 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509108
 2020-05-15 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487T C3037T C11563T C14408T C18877T GAA20263ATT A23403G G24550A G25563T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509947 MT846634
 2020-05-15 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11003T C14408T A23403G G25563T C26858T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509949 MT846636
 2020-05-15 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C7764T C14408T A23403G A23592G G25563T C25904T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509959 MT846646
 2020-05-15 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512201
 2020-05-15 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1832/2020
 ATTAAAGGTTT1- C241T C1059T C1887T C3037T G11761T C14408T G16188T G20580T G22793T A23403G G25563T T28282C

EPI_ISL_512642
 2020-05-15 2020-08-11
 Ukraine hCoV-19/Ukraine/203100364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T A9634T C14408T C22713T A23403G C25546M GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512810
 2020-05-15 2020-08-12
 Ukraine hCoV-19/Ukraine/203100362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G3539T C5986Y T7258Y C14408T A20268R A23403G C24096Y TACTTCTTTTTC26294- T26330- T26359- G26372K A26530R G29868A

EPI_ISL_513807
 2020-05-15 2020-08-13
 United States hCoV-19/USA/CA-CZB-2366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCA1- C241T C3037T T4711C C4897T A6709G T10076C C14408T C18570T A18945G G18972T A23403G GGG28881AAC C29025T CACCGAGGCCACGCGGAGTACGATCGAGTGTACA29730- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513808
 2020-05-15 2020-08-13
 United States hCoV-19/USA/CA-CZB-2367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATC1- C241T C3037T T4711C C4897T A6709G T10076C C14408T C18570T A18945G G18972T A23403G GGG28881AAC C29025T CACCGAGGCCACGCGGAGTACGATCGAGTGTACA29730- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513809
 2020-05-15 2020-08-13
 United States hCoV-19/USA/CA-CZB-2368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T87K C241T C3037T T4711C C4897T A6709G T10076C C14408T G15652K C18570T A18945G G18972T A23403G GGG28881AAC C29025T CACCGAGGCCACGCGGAGTACGATCGAGTGTACA29730- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513814 MW036032
 2020-05-15 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2374/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29384T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513815 MW036026
 2020-05-15 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2375/2020
 C241T C1059T C3037T C9133Y C14408T C22006Y A23403G G25563T G29384T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_513816 MW036057
 2020-05-15 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2376/2020
 AT1-Y C241T C1059T C3037T C14408T A23403G T25548A G25563T G29384T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513841 MW035992
 2020-05-15 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1413A C3037T C14408T C22502A A23403G G25563T C29743T G29779T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513889 MW036074
 2020-05-15 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2504/2020
 A1- C241T C3037T C9430T C14408T G19969A A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513891 MW036083
 2020-05-15 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2506/2020
 A26W C71M C228Y C241T C3037T C9430T C14408T G19969A A20268G A23403G C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_513925 MT879619
 2020-05-15 2020-08-13
 Pakistan SARS-CoV-2/human/PAK/SARS-CoV-2-KPK-KUST-SJTU/2020
 ATTAAA1- C241T C2416T C3037T G8371T T9208C C10741T G11083T G12565A C14408T G16945A C22477T A23403G G25563T C29253T G29645T

EPI_ISL_515423
 2020-05-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0161/2020
 ATT1- C241T C313T C2147T C3037T C12008T C14408T A23403G G23628T GGG28881AAC

EPI_ISL_515424
 2020-05-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0162/2020
 ATT1- C241T C379A C1059T C3037T G9652T G11083T C11102T CC14407TT A23403G G25563T C28185A

EPI_ISL_515425
 2020-05-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0163/2020
 ATTAAAGGTT1- C241T C1059T C3037T C9967T C14408T G15898T T15900G A23403G G25563T C27964T

EPI_ISL_515426
 2020-05-15 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0164/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C14408T C21364T A23403G G25563T

EPI_ISL_520675
 2020-05-15 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L2005036083/2020
 C241T C3037T C14408T C19269T A23403G A23532G GGG28881AAC AGTGAACA29763-

EPI_ISL_523408
 2020-05-15 2020-08-26
 Netherlands hCoV-19/Netherlands/NH-EMC-39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T C14408T A23403G A24862G A27674T G28703T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523557
 2020-05-15 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T TT7275GG C14408T A23403G A24862G A27674T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523569
 2020-05-15 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524115
 2020-05-15 2020-08-27
 United States hCoV-19/USA/UT-08320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T A23403G C26256T G27987T C28292A C29668T G29755T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524126
 2020-05-15 2020-08-27
 United States hCoV-19/USA/UT-08337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4672T C5184T C14408T C18457T A19334G A23403G C26256T C29668T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524136
 2020-05-15 2020-08-27
 United States hCoV-19/USA/UT-08350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A7870G G12315A C14408T C21058T A23403G G25563T G27670T C27964T G29543T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524152
 2020-05-15 2020-08-27
 United States hCoV-19/USA/UT-08369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1093T C3037T G6901A C14408T A16638G A23403G G28812T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524163
 2020-05-15 2020-08-27
 United States hCoV-19/USA/UT-08380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C10789T C14408T G16852T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524174
 2020-05-15 2020-08-27
 United States hCoV-19/USA/UT-08393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A716G C2094T C2416T C3037T G4960T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524182
 2020-05-15 2020-08-27
 United States hCoV-19/USA/UT-08403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524939
 2020-05-15 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C5884T G7936A C13487T C14408T C16887T C22858T A23403G G25563T C28472T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525092
 2020-05-15 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C203T C241T A716G C2094T C2416T C3037T C14408T C15579T A23403G T24349C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525208
 2020-05-15 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G C24382T G25563T C27524T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525211
 2020-05-15 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T A716G C2094T C2416T C3037T C14408T A23403G G25494T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525223
 2020-05-15 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G3518T C13536T C14408T G19480T A23403G T27384C C29200T T29672C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525228
 2020-05-15 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C5884T G7936A C13487T C14408T C16887T C22858T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525256
 2020-05-15 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C6120T C10377T G11745A C14408T C18877T A23403G G25563T G28027T G28817T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525259
 2020-05-15 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1093T C3037T G6901A C14408T A16638G A23403G A27742G G28812T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525268
 2020-05-15 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C14408T G15908A C19145T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525306
 2020-05-15 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C5884T G7936A C13487T C14408T C16887T C22858T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525317
 2020-05-15 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G3518T C13536T C14408T C19402T G19480T A23403G G25912T T29672C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527676
 2020-05-15 2020-09-04
 United States hCoV-19/USA/MN-CDC-6215/2020
 A2480G C2558T C5850T C10908T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_530097
 2020-05-15 2020-09-10
 Spain hCoV-19/Spain/MD-R20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530190 MT997712
 2020-05-15 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1314T C3037T C14408T A23403G G25563T A27821G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_533348
 2020-05-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-543BDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5305T C7728T C10296T C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533379
 2020-05-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-54D433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3903T C7764T C14408T C15237T A23403G G23611T C26461T A28795G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534836
 2020-05-15 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3084/2020
 C241T C3037T C11379T C12525T C14408T C19170T G19509A A23403G G28001T GGG28881AAC A29892G A29903-

EPI_ISL_537238
 2020-05-15 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2D12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4980Y C14408T G17443T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537532
 2020-05-15 2020-09-16
 United States hCoV-19/USA/CA-UCLA-227/2020
 A1- C37T C241T C1059T C3037T G4162A C14408T C22185T A23403G G25563T G28028T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_539535
 2020-05-15 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2012564/2020
 C241T C3037T T3524C C3653T A3765G C8025T C12053T C14408T G18677T A20268G A23403G AA29902-

EPI_ISL_539536
 2020-05-15 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2012566/2020
 C241T G2129A C3037T C14408T C17977T A19298G A20268G A23403G AA29902-

EPI_ISL_539537
 2020-05-15 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2012568/2020
 C241T C3037T T8478C G8852C C14408T T19695A A20268G A23403G AA29902-

EPI_ISL_542864
 2020-05-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-1822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G116A C241T C1059T C3037T C3602T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542896
 2020-05-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-1903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4931A C6990T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542923
 2020-05-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-1962/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T T14565A A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542927
 2020-05-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-1970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T A28586G G28881A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545188
 2020-05-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-2223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C11345T C14408T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545189
 2020-05-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-2224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545191
 2020-05-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-2231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545193
 2020-05-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-2233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4090T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545194
 2020-05-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-2234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C20368T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545201
 2020-05-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-2246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C20368T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545231
 2020-05-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-2296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8320T C14408T C22311T C23127T C23191T A23403G G25563T A29396C G29440A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545343
 2020-05-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-2505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C643T C1059T C3037T G3122T C14408T G17808T A23403G G25471C G25563T C25572A T27384C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559677
 2020-05-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-486CA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C6696T G7379T G8705A C11001T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559691
 2020-05-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-4862AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16419C G21718T A23403G GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559698
 2020-05-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-485E14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C475T C3037T G7146T C14408T A23403G C26456Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559701
 2020-05-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-4858F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13119T C14408T C21767T A23403G A25891C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568979
 2020-05-15 2020-10-02
 France hCoV-19/France/IHU-0822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1263T C2416T C3037T G8371T C14408T A23403G G25563T G25767T C29541T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

LR877411
 2020-05-15 2020-08-17
 Poland covid_hub_pl_ibch_0040
 

MT811292
 2020-05-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0649-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T5182C C11916T C14408T C18998T T21075C A23403G G25563T G25947C G27703T G29540A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811305
 2020-05-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0673-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T T5182C C11916T C14408T C18998T T21075C A23403G G25563T G25947C G27703T G29540A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT956915
 2020-05-15 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-74420140/2020
 C8782T T9477A C14805T G25979T T28144C C28657T C28863T

MT967929
 2020-05-15 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6215/2020
 A2480G C2558T C5850T C10908T G11083T C14805T G26144T AAAAAAAAAAAAAAAAAAAAA29883-

MW001270
 2020-05-15 2020-09-14
 United States SARS-CoV-2/human/USA/261-ETA/2020
 C241T C1059T C2788T C3037T C14408T C16260T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAA29883-

MW001271
 2020-05-15 2020-09-14
 United States SARS-CoV-2/human/USA/262-NP-OP/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A T29344C AAAAAAAAAAAAAAAAAAAAA29883-

MW001272
 2020-05-15 2020-09-14
 United States SARS-CoV-2/human/USA/263-ETA/2020
 C157T C241T C1059T C2485T C3037T C4002T C12513T C14408T C15857T G18255T G21986A G22317A A23403G G25563T C29614T AAAAAAAAAAAAAAAAAAAAA29883-

MW001273
 2020-05-15 2020-09-14
 United States SARS-CoV-2/human/USA/263-NP-OP/2020
 C157T C241T C1059T C2485T C3037T C4002T C12513T C14408T C15857T G18255T C19524T G21986A G22317A A23403G G25563T C29614T C29836T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_452998
 2020-05-16 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B1B1B/2020
 C241T C3037T G8612T C14408T G22436T A23403G GGG28881AAC G29705T

EPI_ISL_453005
 2020-05-16 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B2109/2020
 C241T C3037T T4149C CAG6501- A8031G C12525T C14408T A23403G G25599T GGG28881AAC C29353T

EPI_ISL_453659
 2020-05-16 2020-05-27
 United Kingdom hCoV-19/England/NOTT-1113E4/2020
 A187G C241T C823T C3037T T8473C C14408T T22369C A23403G C24237T G28882T

EPI_ISL_458106 MT560675
 2020-05-16 2020-06-03
 India SARS-CoV-2/human/IND/GBRC146a/2020
 C241T C3037T C9438T C14408T A23403G A29188T

EPI_ISL_458107 MT560669
 2020-05-16 2020-06-03
 India SARS-CoV-2/human/IND/GBRC146b/2020
 C241T C3037T G4255A C9438T C14408T A23403G A29188T

EPI_ISL_458108 MT560677
 2020-05-16 2020-06-03
 India SARS-CoV-2/human/IND/GBRC147/2020
 C241T C3037T C3634T C14408T C15324T A23403G

EPI_ISL_460949
 2020-05-16 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C3315T A10323G C12115T C14408T T15696G A23403G C25521T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461008
 2020-05-16 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17641T T19209C A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462030
 2020-05-16 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C7409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17747T C18463T A23403G C25603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462058
 2020-05-16 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CCAE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17747T C18463T A23403G C25603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_463064
 2020-05-16 2020-06-09
 India hCoV-19/India/ILSCV19048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T14190G G22468T G22661T T28144C G28221T G28878A CAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29686-

EPI_ISL_463085
 2020-05-16 2020-06-09
 India hCoV-19/India/ILSCV21721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C5700A A10375G C14408T A17429G C18400G A23403G G24521T A25381C GGG28881AAC TTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29698-

EPI_ISL_467491
 2020-05-16 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0139/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C20234T A23403G GGG28881AAC G29315C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_468076
 2020-05-16 2020-06-16
 Bangladesh hCoV-19/Bangladesh/CHRF_0008/2020
 C241T A1163T C3037T C8809A T11218C C14408T C17004T G21123K A23403G GGG28881AAC A29871H

EPI_ISL_468353 MT628090
 2020-05-16 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1317/2020
 C241T G944A C1059T C3037T C14408T C19186Y T22020Y A23403G G25563T G27047T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_469313
 2020-05-16 2020-06-18
 United Kingdom hCoV-19/England/NORT-28C87B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G23593T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469350
 2020-05-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BBB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469356
 2020-05-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BBA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A A12180G C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469362
 2020-05-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BB58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C12546T C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469389
 2020-05-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BBC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A A12180G C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469391
 2020-05-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BD07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469401
 2020-05-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BB94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A A12180G C14408T C19524T A23403G C23731T G28580T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469444
 2020-05-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BC46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2470Y C3037T C7851T C14408T C20233T C22594Y A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469446
 2020-05-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BC0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_469455
 2020-05-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BBEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC C29750Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469457
 2020-05-16 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BB85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1968T C3037T C4206T T12629C C14408T C20555Y A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471709
 2020-05-16 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20685/2020
 A187G C241T C2037T C3037T C14408T A23403G C25465T C25916Y AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_472938
 2020-05-16 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160498/2020
 ATTAAAGGTT1- C241T C3037T C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_473344
 2020-05-16 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F891/2020
 C241T C3037T C6312A C9438T A10948G C14408T G16377A A23403G T24313C C25609T GGG28881AAC

EPI_ISL_473354
 2020-05-16 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F970/2020
 C241T C3037T G10097A C10332T C14408T A23403G C23731T G26439T G28580T GGG28881AAC

EPI_ISL_473356
 2020-05-16 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F99E/2020
 C241T C1221T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_473428
 2020-05-16 2020-06-23
 United Kingdom hCoV-19/England/BIRM-60FE3/2020
 C241T C3037T A6889G C14408T A23403G G25409T GGG28881AAC C29364T TACGATCGAGTGTACAGTGAACAATGC29748-

EPI_ISL_473429
 2020-05-16 2020-06-23
 United Kingdom hCoV-19/England/BIRM-60FF2/2020
 C241T C2299T C3037T G3955T TCAAATTCG6329- C10834T C14408T A23403G T25663C C26936T GGG28881AAC C29200T

EPI_ISL_473694
 2020-05-16 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12454G C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473901
 2020-05-16 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6174/2020
 C241T G2755T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473902
 2020-05-16 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6176/2020
 C241T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473903
 2020-05-16 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6177/2020
 C241T C1059T C3037T T7814C C14408T G18213T A18818G A21137G A23403G G25563T

EPI_ISL_473904
 2020-05-16 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6178/2020
 C241T G1590T C3037T C10798A G12514T C13862T C14408T G22801C A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473905
 2020-05-16 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6180/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_476083 LR824482 LR861107
 2020-05-16 2020-06-25
 Switzerland 140004
 C241T C3037T C5547T C14408T A20268G C22347S A23403G C28854T G29751A

EPI_ISL_476084 LR824483 LR861106
 2020-05-16 2020-06-25
 Switzerland 140008
 C241T C313T C3037T A5257W C5673Y G6419R A8085R G8653K G9101R C13418Y C14408T C18744Y A19115W C20368Y G21073K C21732Y C22208Y C22347M C22477M A22492W A22504W A23403G G24635K C24921Y C25276Y C25324Y C26340Y C26833Y G27358T C27752T GGG28881AAC C29167Y C29541Y C29545Y

EPI_ISL_476085 LR824479 LR861103
 2020-05-16 2020-06-25
 Switzerland 140009
 C241T C313T C3037T A8031R C14408T T22516W A23403G G27358T C27752T C27925Y GGG28881AAC

EPI_ISL_476563
 2020-05-16 2020-06-25
 Argentina hCoV-19/Argentina/Heritas_HG014/2020
 C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C28863T G29540A

EPI_ISL_476884
 2020-05-16 2020-06-26
 India hCoV-19/India/DRDE 3926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C3037T T8022K C14408T A23403G C23874Y G24199T A25080R T25675K C25680G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476888
 2020-05-16 2020-06-26
 India hCoV-19/India/DRDE_3983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T T394C C3037T T8022K C14408T A23403G A25080R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476889
 2020-05-16 2020-06-26
 India hCoV-19/India/DRDE_3987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C3037T T8022K A8026W A8565R G11108K C11967Y C14408T C18877Y C21590Y C22444Y A23403G G25563K C25572Y G25621K A26319R C26735Y C28854Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476890
 2020-05-16 2020-06-26
 India hCoV-19/India/DRDE_4022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C313T T1623C C3037T C5700M T8022K C14408T C22347S A22351W A23403G C26447T G27703T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477255
 2020-05-16 2020-06-29
 India hCoV-19/India/InStem_NCBS_0055/2020
 ATTAAAGGTTTATACCT1- C241T C2836T C3037T A3097G C5672T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_477256
 2020-05-16 2020-06-29
 India hCoV-19/India/InStem_NCBS_0056/2020
 T2G AA4TC GTT8ACG A12G A14GCTCTTCCGAT C16T C241T C2836T C3037T A3097G C5672T C14408T C18877T C22444T A23403G G25563T C26735T G28085T C28854T

EPI_ISL_477258
 2020-05-16 2020-06-29
 India hCoV-19/India/InStem_NCBS_0058/2020
 T2G AA4TC GTT8ACG A12G A14GCTCTTCCGAT C16T C241T C2836T C3037T A3097G C5672T C14408T C18877T C22444T A23403G G25563T C26735T C28854T A29879T -29884TCAATTAAACACAAAAGAAGATAGTAATGC A29886G A29890T AAA29893GGG A29897C -29904GCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

EPI_ISL_477296
 2020-05-16 2020-06-29
 United States hCoV-19/USA/MN-MDH-1207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2245T C3037T C14408T G19072T T22552C A23403G G25563T C25889T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_478121
 2020-05-16 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A363G C2146T C3037T C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480944 MT704111
 2020-05-16 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0293/2020
 ATTAAA1- C241T C1059T C3037T G4136T C13115T C14408T G15243T A23403G G25563T T27984C TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_480945 MT704112
 2020-05-16 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0294/2020
 ATT1- C241T C1059T C3037T C10188T C14408T T22220C A23403G T24982C G25563T G26849T C27964T G28851A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480947 MT704114
 2020-05-16 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0296/2020
 ATTA1- C241T C1059T C3037T C10188T C14408T T22220C A23403G G23426T T24982C G25563T C27964T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_480948 MT704115
 2020-05-16 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0297/2020
 ATTA1- C241T C1059T C3037T C10188T C14408T C19118T A20431G T22220C C22883A A23403G T24982C G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480949 MT704116
 2020-05-16 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0298/2020
 AT1- C241T C1059T C3037T C10188T C14408T T22220C A23403G G24834T T24982C G25563T C27964T G28001T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480950 MT704117
 2020-05-16 2020-07-02
 United States SARS-CoV-2/human/USA/FL-BPHL-0299/2020
 AT1- C241T C1059T C3037T C10188T C14408T T22220C A23403G T24982C G25563T G26849T C27964T G28851A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_481571
 2020-05-16 2020-07-03
 Finland hCoV-19/Finland/16May68S11/2020
 C241T C1059T C2062T C3037T C14114T C14408T A23403G G24368T G25563T C28011G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482437
 2020-05-16 2020-07-03
 United States hCoV-19/USA/OR-PROV-192/2020
 C241T C1059T C3037T C4586T A5618G C9438T C11916T C14408T T22207C A23403G G25563T G28027T G29742T

EPI_ISL_482498
 2020-05-16 2020-07-04
 India hCoV-19/India/NCDC1580_CSIR-IGIB/2020
 C241Y C3037T C13730Y C14408Y A15435R C15509M C18877Y C22444Y A23116W A23403R AG24389MS G25563K TA26491YW C26735Y G27240K A28676M C28854T G29764K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483236
 2020-05-16 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0580-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G11243T C14408T C19172T A20268G A23403G T24076C C26195A C28854T

EPI_ISL_483298
 2020-05-16 2020-07-07
 United States hCoV-19/USA/CA-ALSR-0681-IPL/2020
 ATTA1- C241T C3037T C4582T C6525T C11102T C14408T A20268G T20976C A23403G C23709T

EPI_ISL_484449
 2020-05-16 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C427B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7675T T8908C C14408T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487101
 2020-05-16 2020-07-13
 Nigeria hCoV-19/Nigeria/OY260-CV55/2020
 ATTA1- C241T C1059T C3037T C3042T A4000C C14408T T15420C T16456C T23308C A23403G G25563T C27964T A29903-

EPI_ISL_489828 MT757105
 2020-05-16 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0419/2020
 ATTAAAGGTT1- C241T C1059T C3037T A4386G T6685C C11575T C14408T C16750T C20077T A23403G G25563T C26111T C27964T G28077C T29832C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491976
 2020-05-16 2020-07-18
 Oman hCoV-19/Oman/205036179/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G6576T G10265A C14408T C16293T G17641A C18395T T18471C A23403G G25660A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_492838
 2020-05-16 2020-07-20
 United Kingdom hCoV-19/England/WSFT-25C0FD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T T11638C C14408T A23403G C27847T GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493459
 2020-05-16 2020-07-21
 United Kingdom hCoV-19/England/NORT-285C58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T C14408T G22093A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493938
 2020-05-16 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G T26972C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493939
 2020-05-16 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11653T C14408T C18788T T19839C A23403G A24862G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493941
 2020-05-16 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T G9526T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495799 MT821600
 2020-05-16 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1349/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T T13216C C14408T A23403G G24328C C24382T G25563T A26562G C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495808 MT821659
 2020-05-16 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1358/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495818 MT821663
 2020-05-16 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1368/2020
 AT1- G354A C2070T C8782T C17747T A17858G C18060T A26566G C27925T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496559
 2020-05-16 2020-07-24
 India hCoV-19/India/NCCS_NR1323/2020
 AT1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC TG29867-

EPI_ISL_496560
 2020-05-16 2020-07-24
 India hCoV-19/India/NCCS_NR1326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC A29903-

EPI_ISL_497878
 2020-05-16 2020-07-25
 India hCoV-19/India/NCCS_NR1333/2020
 A4- C241T C313T C3037T C5700A GC9245TT C11653T C14408T C18267T A23403G A24461- GGG28881AAC

EPI_ISL_498133
 2020-05-16 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T T15225C C15928T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498134
 2020-05-16 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1274T C2113T C3037T C7765T C14408T T15225C C15928T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498135
 2020-05-16 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C10030T C14408T T15225C C15928T C17690T A18405G C18877T C22341T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498136
 2020-05-16 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T T15225C C15928T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498137
 2020-05-16 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T T15225C C15928T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498138
 2020-05-16 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5175T A10880G T11638C C14408T A18226C A23403G GGG28881AAC C29386T C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498139
 2020-05-16 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T G10793T A14270C C14408T C18687T A23403G C28500T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500960
 2020-05-16 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1069FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500964
 2020-05-16 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1069B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9037C C11514T C14408T C23185T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500974
 2020-05-16 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1069E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A25448G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500991
 2020-05-16 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T A5309G C14408T A23403G A24837T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500995
 2020-05-16 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G ATCAT27295- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500996
 2020-05-16 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1069A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9443T G11083T C14408T G19684T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501031
 2020-05-16 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1069D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9037C C11514T C14408T C23185T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501042
 2020-05-16 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G713T C3037T C14408T T20717C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501047
 2020-05-16 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-1069C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10376T C11259T C14408T A23403G C26208T C26681T C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501049
 2020-05-16 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C18904T A23403G G25606T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501160
 2020-05-16 2020-07-30
 United States hCoV-19/USA/WA-UW-9368/2020
 ATTAAAGGTTTATACC1- TCCC18GGGA AA34HT C241T C1059T C3037T T8883C TT8885AA T10554D AGG13512TTA TA14222GC C14408T C14922T T21146D A23403G G25563T G29553A A29700G G29868A C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_507274
 2020-05-16 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15932V/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G1401A C3037T C6040T C14408T A23403G G27415T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507275
 2020-05-16 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15933S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A17805G A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_509110
 2020-05-16 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11563T C14408T C18877T GAA20263ATT A23403G G24550A G25563T C25836T C29754T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509111
 2020-05-16 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T C14408T A23403G T25729C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509127
 2020-05-16 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11563T C14408T C18877T GAA20263ATT A23403G G24550A G25563T

EPI_ISL_509131
 2020-05-16 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T

EPI_ISL_509958 MT846645
 2020-05-16 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T C18312T T19839C A23403G C23707T G25249T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512168
 2020-05-16 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1759/2020
 ATTAAAGGTTT1- C241T C2594T C3037T C4582T C5974T C11102T C14408T A17757G A20268G C21541T A23403G

EPI_ISL_512181
 2020-05-16 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1783/2020
 ATTAAAGGTT1- C241T C2594T C3037T C4582T C11102T C14408T A17757G A17986G A20268G C21541T A23403G C27527T A27980G C28754G

EPI_ISL_512626
 2020-05-16 2020-08-11
 Ukraine hCoV-19/Ukraine/203100347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C9344T C10747T C14408T A23403G G24834A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_512641
 2020-05-16 2020-08-11
 Ukraine hCoV-19/Ukraine/203100363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G7798A G9479T A12644G C14408T T15427C A20268G A23403G C27707T AAAAAAAAAAAAAAA29889-

EPI_ISL_513845 MW035997
 2020-05-16 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2424/2020
 ATTAAAGGTTT1- T76K C241T C337Y C379A C1059T C3037T C14408T C16887Y A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515427
 2020-05-16 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0165/2020
 ATT1- C241T C1059T C3037T C9967T C14408T A23403G G25563T C27964T

EPI_ISL_515968
 2020-05-16 2020-08-20
 India hCoV-19/India/nimh-19510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1684T G2819T C3037T C3634T T4949C C8025T C14408T C15324T A23403G G28899T C29376T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_515969
 2020-05-16 2020-08-20
 India hCoV-19/India/nimh-19669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_515970
 2020-05-16 2020-08-20
 India hCoV-19/India/nimh-19688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G1820A C6310A C6312A G11083T C13730T C19524T C23929T C28311T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_515971
 2020-05-16 2020-08-20
 India hCoV-19/India/nimh-19696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1912T C3037T G5230T C6027T C8950T G11083T C14408T G21255T A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_515973
 2020-05-16 2020-08-20
 India hCoV-19/India/nimh-19716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C3634T T4949C G11083T C14408T C15324T C22450T A23403G TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_516806
 2020-05-16 2020-08-24
 Indonesia hCoV-19/Indonesia/YO-200927/2020
 ATTAAAGGTTTATACCTTC1- AG22GA G10201T A29209G T29685A G29868A C29870A

EPI_ISL_522443
 2020-05-16 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2660/2020
 ATTAAAGG1- T11A C241T G598T C3037T C14408T A20268G A23403G T24076C C28854T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_523239
 2020-05-16 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523368
 2020-05-16 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T TT7275GG C14408T A23403G A24862G A27674T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523370
 2020-05-16 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T TT7275GG C14408T A23403G A24862G A27674T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523371
 2020-05-16 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T TT7275GG C14408T A23403G A24862G A27674T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_523550
 2020-05-16 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T C14408T A23403G A24862G A27674T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_524915
 2020-05-16 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C1093T A1731C C3037T C4795T A7367G T11940C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524925
 2020-05-16 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C1514T C3037T C6541T C11379T C14408T A22320G A23403G G25444T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524927
 2020-05-16 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C8389T G9705T G11521A C14408T G21786T A23403G G25563T T27164C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524942
 2020-05-16 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T A716G T1243C C2094T C2416T C3037T C14408T C15579T A23403G G25563T C25667T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524965
 2020-05-16 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1555T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524971
 2020-05-16 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T A716G T1243C C2094T C2416T C3037T C14408T C15579T A23403G G25563T C25667T G29543C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525236
 2020-05-16 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1555T C3037T A3954G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529003
 2020-05-16 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE49273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A6869W C14408T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_529004
 2020-05-16 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE49480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- CCA36GAR C241T C3037T A6866W A6869W C14408T A23403G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_529005
 2020-05-16 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE49482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A6869W C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_530098
 2020-05-16 2020-09-10
 Spain hCoV-19/Spain/MD-R22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T C8782T A23403G C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534930
 2020-05-16 2020-09-14
 United Kingdom hCoV-19/England/OXON-B40FC/2020
 C241T C3037T T6283C C14408T T19839C A23403G C26681T GGG28881AAC AAAAAAA29897R

EPI_ISL_537209
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2E6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8908C C14408T C16457T C18555T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537214
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2D5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATG518- C3037T C14408T G17443T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537215
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2E3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4396R C6633Y C14408T G17443T T21925Y A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537216
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2E1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17443T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537220
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2E2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17443T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537221
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2E4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1261K C3037T C14408T G17443T T21925C A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537225
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2D8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17443T T21925C A23403G G23429T G27915R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537230
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2E88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2869G C3037T G5018K C14408T A23403G T27672C GGG28881AAC C29095T T29817C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537237
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2DC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17443T T21925C A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537239
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2E5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17443T T21925C A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537251
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2DD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5950T C14408T G17443T A23403G G23429T GGG28881AAC C29118T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537253
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2DF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3552T C14408T G17443T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537255
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2D9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17443T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537261
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2D7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17443T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537264
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2DE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17443T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537265
 2020-05-16 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2DA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17443T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542818
 2020-05-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-1758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T493G C1059T C3037T T6612C G9479T C11916T C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542845
 2020-05-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-1796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4090T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542851
 2020-05-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-1803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T4324G T9107C C14408T C15952T A23403G G25563T A28254G C29358A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542857
 2020-05-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-1813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2228C C3037T C7712T C14408T C16163T G20947T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542859
 2020-05-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-1815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T T20037C A23403G G25563T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542865
 2020-05-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-1824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C10789T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542915
 2020-05-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-1949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559689
 2020-05-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-4863C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C8809T G10097A C14408T A23403G C23731T C25714T G28580T GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561022
 2020-05-16 2020-09-30
 Gambia hCoV-19/Gambia/GC19-1527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT811252
 2020-05-16 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0580-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G11243T C14408T C19172T A20268G A23403G T24076C C26195A C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811311
 2020-05-16 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0681-IPL/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4582T C6525T C11102T C14408T A20268G T20976C A23403G C23709T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_453001
 2020-05-17 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B2048/2020
 C241T C3037T C14408T C19140T C19374T G22299A A23403G GGG28881AAC

EPI_ISL_453004
 2020-05-17 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B20DF/2020
 C241T C2455T C3037T C9700T C11747T C13378T C14408T T18750C A23403G C25904T GGG28881AAC C28943A

EPI_ISL_453662
 2020-05-17 2020-05-27
 United Kingdom hCoV-19/England/NOTT-11141E/2020
 C241T C274T C3037T C6312A A10948G A12075G C14408T A23403G G25552T GGG28881AAC

EPI_ISL_453663
 2020-05-17 2020-05-27
 United Kingdom hCoV-19/England/NOTT-11142D/2020
 C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC

EPI_ISL_455476
 2020-05-17 2020-05-30
 Romania hCoV-19/Romania/285388/2020
 C241T G526T C3037T C14408T A23403G C29722T

EPI_ISL_456974
 2020-05-17 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5123/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_456975
 2020-05-17 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5125/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G

EPI_ISL_456976
 2020-05-17 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5126/2020
 C241T C3037T C14408T A20268G A23403G C28854T A29143C

EPI_ISL_456977
 2020-05-17 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5128/2020
 C241T C3037T C14408T C14636T A20268G A23403G C28854T

EPI_ISL_457527 LR814030
 2020-05-17 2020-06-02
 United Kingdom NORW-EC4A4
 C186T C241T C1059T C3037T A9634T C11109T C11916T C14408T A23403G T25070A G25563T C26058T

EPI_ISL_457568 LR814047
 2020-05-17 2020-06-02
 United Kingdom NORW-EC899
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457569 LR821875
 2020-05-17 2020-06-02
 United Kingdom NORW-EC8B7
 C241T C3037T C7105T C14408T C18486Y C21575T A23403G GGG28881AAC

EPI_ISL_457570 LR821951
 2020-05-17 2020-06-02
 United Kingdom NORW-EC8C6
 A1- C241T C3037T C3162T C10626T C14408T T21695C A23403G G28077T GGG28881AAC

EPI_ISL_457571 LR821982
 2020-05-17 2020-06-02
 United Kingdom NORW-EC8E4
 ATTA1- C241T C1684T C3037T C6593T C12915T C14408T G14829T A20268G G21255T A23403G G29744A

EPI_ISL_458111 MT560705
 2020-05-17 2020-06-03
 India SARS-CoV-2/human/IND/GBRC149/2020
 C241T C3037T T8296C T10756C T11264C C12076T C14408T C18877T A23403G G25563T C25916T C26681T G28690T C28854T

EPI_ISL_458248
 2020-05-17 2020-06-04
 United States hCoV-19/USA/CA-SR0365/2020
 C241T C3037T G4136A C11575T C14408T C19029T A20268G A23403G C25469T C28854T

EPI_ISL_460950
 2020-05-17 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G C26461T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461006
 2020-05-17 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17641T T19209C A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_469324
 2020-05-17 2020-06-18
 United Kingdom hCoV-19/England/NORT-28C9A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469387
 2020-05-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BB1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469394
 2020-05-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B9F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24418T G28237T GGG28881AAC A29016G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469400
 2020-05-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BA79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC C29614Y CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469413
 2020-05-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B9C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469415
 2020-05-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BC28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469438
 2020-05-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B9D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T A16474R C19524T A23403G C23731T G28580T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469448
 2020-05-17 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BA00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6425G C14408T G14500T A23403G G27467T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471909
 2020-05-17 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20888/2020
 C241T C355T C1059T C3037T A5011M C14408T A23403G C25317T C25480Y G25563T C26078T G27987K C28893T

EPI_ISL_472879
 2020-05-17 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15FFD7/2020
 C241T C3037T C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_473709
 2020-05-17 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A C3037T C3411T C3885T G12137A C14408T C17104T A20268G A23403G G25785T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473813
 2020-05-17 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5157/2020
 C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C

EPI_ISL_473906
 2020-05-17 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6184/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_475526
 2020-05-17 2020-06-23
 Sweden hCoV-19/Sweden/20-51516/2020
 C241T C1059T C3037T C14408T C17678T A23403G G24368T G25563T

EPI_ISL_476885
 2020-05-17 2020-06-26
 India hCoV-19/India/DRDE 4078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C3037T C4809T G6359T G14245A C14408T G17721K C22350M A23403G G28325A G29179T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476886
 2020-05-17 2020-06-26
 India hCoV-19/India/DRDE 4083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C3037T C4809T G6359T T8022K G14245A C14408T A23403G G28325A G29179T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476887
 2020-05-17 2020-06-26
 India hCoV-19/India/DRDE_4093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C3037T C4809T G6359T T8022K A8026W G14245A C14408T A23403G G28325A G29179T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476891
 2020-05-17 2020-06-26
 India hCoV-19/India/DRDE_4096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C3037T C4809T G6359T T8022K A8026W G14245A C14408T G17721K T22501W A22505W A23403G G28325A G29179T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476892
 2020-05-17 2020-06-26
 India hCoV-19/India/DRDE_4105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C3037T C4809T G6359T G14245A C14408T A23403G G28325A G29179T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476893
 2020-05-17 2020-06-26
 India hCoV-19/India/DRDE_4111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C3037T C4809T G6359T T8022K A12413R G14245A C14408T A23403G A25080R G28325A G29179T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_480305
 2020-05-17 2020-07-01
 Bulgaria hCoV-19/Bulgaria/27/2020
 C241T C3037T C9319T A11595G C12068T C14408T G22021T A23403G A23767G GGG28881AAC

EPI_ISL_482438
 2020-05-17 2020-07-03
 United States hCoV-19/USA/OR-PROV-193/2020
 C241T C1059T C3037T C4586T A5618G C11916T C14408T T22207C A23403G G25563T G28027T G29742T

EPI_ISL_484264
 2020-05-17 2020-07-08
 United Kingdom hCoV-19/England/NORT-296191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2583T C3037T C9430T G10097A C14408T C17012T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488509
 2020-05-17 2020-07-14
 United Kingdom hCoV-19/England/NORT-295DAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2583T C3037T C9430T G10097A C12400T C14408T C17012T A23403G C23731T T25202K G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488676
 2020-05-17 2020-07-14
 United Kingdom hCoV-19/England/NORT-295D9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24381T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488723
 2020-05-17 2020-07-14
 United Kingdom hCoV-19/England/NORT-295DCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2583T C3037T C9430T G10097A C14408T C17012T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490472
 2020-05-17 2020-07-15
 United Kingdom hCoV-19/England/NORT-29EAAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5144T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490474
 2020-05-17 2020-07-15
 United Kingdom hCoV-19/England/NORT-29EB04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2173A C2583T C3037T C9430T G10097A C14408T C17012T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490800
 2020-05-17 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165DA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T A3911G C7047T C14408T A23403G T25272C C26028T T27817G

EPI_ISL_491175
 2020-05-17 2020-07-16
 Portugal hCoV-19/Portugal/IGC2885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G G24781T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491978
 2020-05-17 2020-07-18
 Oman hCoV-19/Oman/205036454/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G10265A C14408T C16293T C20132T A23403G C25452T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491979
 2020-05-17 2020-07-18
 Oman hCoV-19/Oman/205036457/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G10265A C14408T C16293T A23403G C25452T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491980
 2020-05-17 2020-07-18
 Oman hCoV-19/Oman/205036471/2020
 A1C T3A A5G GT8AA TAT11GTC CCT15TTG CCCAG19- C241T G1944A C3037T C10228T G10265A G11083T C13968T C14408T C16293T A23403G GGG28881AAC A29865T GACAAAAAAAAAAAA29868T AA29885TC AAAAAA29888GTGTGT A29896C AA29898TT AAA29901GGG

EPI_ISL_491981
 2020-05-17 2020-07-18
 Oman hCoV-19/Oman/205036690/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G1944A C3037T G10265A C14408T C16293T A23403G G25290T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860T

EPI_ISL_491982
 2020-05-17 2020-07-18
 Oman hCoV-19/Oman/205036702/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T G1944A C3037T G10265A C10776T C14408T C16293T A23403G GGG28881AAC A29865T ACAA29869CTTG A29874C A29876G AAA29878TTG AAAAAAAAAAAAAAAAAAAAA29883CC

EPI_ISL_491983
 2020-05-17 2020-07-18
 Oman hCoV-19/Oman/205036713/2020
 TAAA3- TTATACCTTCCCA10- G24C C241T G1944A C3037T C10228T G10265A G11083T C14408T C16293T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491984
 2020-05-17 2020-07-18
 Oman hCoV-19/Oman/205036714/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C823T G1944A C3037T G10265A C14408T C16293T A23403G GGG28881AAC G29862C GAAT29864CCGA A29869G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871C

EPI_ISL_493458
 2020-05-17 2020-07-21
 United Kingdom hCoV-19/England/NORT-285C49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3481T C14408T C20429T G20995T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493943
 2020-05-17 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A T11075C C13862T T14392G C14408T C14937T A23403G T27296C C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493944
 2020-05-17 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G19542T G20679A A23403G T27576G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495281
 2020-05-17 2020-07-22
 India hCoV-19/India/CCMB_OM15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4354A C14408T A23403G C25528T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495282
 2020-05-17 2020-07-22
 India hCoV-19/India/CCMB_OM16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4354A C6573T C14408T A23403G C25528T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495283
 2020-05-17 2020-07-22
 India hCoV-19/India/CCMB_OM17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4354A C6573T C14408T A23403G C25528T GGG28881AAC A29271T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495284
 2020-05-17 2020-07-22
 India hCoV-19/India/CCMB_OM18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C5700A C9693T C14408T C16626T C22482T C22636T A23403G A23524T T23527G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495285
 2020-05-17 2020-07-22
 India hCoV-19/India/CCMB_OM19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T G4354A C6573T C14408T A23403G C25528T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495288
 2020-05-17 2020-07-22
 India hCoV-19/India/CCMB_OM20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G3774A G4354A C6573T C14408T G22021T A23403G C25528T C25693T A27379G GAT27382CTC GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495420
 2020-05-17 2020-07-22
 Turkey hCoV-19/Turkey/KU-010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C2509T C3037T A4465G C13620T C14408T C14724T A23403G G24262T G27703T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_495452
 2020-05-17 2020-07-22
 Turkey hCoV-19/Turkey/KU-042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C2509T C3037T G5015A C13620T C14408T C14724T A23403G G24262T G27703T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_495800 MT821561
 2020-05-17 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1350/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C5173T T13216C C14408T A23403G G24328C C24382T G25563T A26562G C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495801 MT821696
 2020-05-17 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1351/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T T13216C C14408T A23403G G24328C C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495803 MT821592
 2020-05-17 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1353/2020
 AT1- C241T C1059T C3037T T13216C C14408T A23403G G24328C C24382T G25563T C27630T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495804
 2020-05-17 2020-07-23
 United States hCoV-19/USA/WA-S1354/2020
 ATTAAAGGTTT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495813 MT821670
 2020-05-17 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1363/2020
 AT1- G354A C2070T C8782T C17747T A17858G C18060T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_496561
 2020-05-17 2020-07-24
 India hCoV-19/India/NCCS_NR1548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T3011C C3037T C3634T C14408T C15324T C20235T A23403G

EPI_ISL_496562
 2020-05-17 2020-07-24
 India hCoV-19/India/NCCS_NR1553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T3011C C3037T C3634T C14408T C15324T A23403G ATG29866-

EPI_ISL_496563
 2020-05-17 2020-07-24
 India hCoV-19/India/NCCS_NR1565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T T3011C C3037T C3634T C14408T C15324T A23403G

EPI_ISL_497876
 2020-05-17 2020-07-25
 India hCoV-19/India/NCCS_NR1474/2020
 AT1CC AAGGTTTATACCT5- C241T C313T C3037T C5700A A9492- C10138T G11083- C13506T C14408T A23403G C25207T G28857T GGG28881AAC

EPI_ISL_500955
 2020-05-17 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106A56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500967
 2020-05-17 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106A83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500979
 2020-05-17 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106A47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C8878T C14408T A23403G GGG28881AAC A29320G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500982
 2020-05-17 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106A65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500987
 2020-05-17 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106A38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T T20592C A23403G G23663T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501036
 2020-05-17 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106A29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501622
 2020-05-17 2020-07-31
 United Kingdom hCoV-19/England/EKHU-260F1D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7258C T8941C C9985Y G12911A C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508400
 2020-05-17 2020-08-04
 India hCoV-19/India/IK79/2020
 AT1- C241T C3037T C13730T C14408T A23403G C28732T G29868A

EPI_ISL_508401
 2020-05-17 2020-08-04
 India hCoV-19/India/IK80/2020
 C241T A1350T C3037T C14408T C21639A A23403G G27754T G29868A

EPI_ISL_508402
 2020-05-17 2020-08-04
 India hCoV-19/India/IK82/2020
 AT1- C241T C3037T G10051A G10793T C13730T C14408T A23403G G25855T T27063C G28337T G29868A

EPI_ISL_508403
 2020-05-17 2020-08-04
 India hCoV-19/India/IK83/2020
 C241T C3037T C13923A C14408T C18828T A23403G C25688T G25855C G29868A

EPI_ISL_508404
 2020-05-17 2020-08-04
 India hCoV-19/India/IK85/2020
 A1- C241T T1692C T2335C C3037T C14408T C21707T A23403G G29868A

EPI_ISL_508428
 2020-05-17 2020-08-04
 India hCoV-19/India/MW24/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C3634T C5020A C14408T C15324T A20236T A23403G G24077T T28705C G29868A

EPI_ISL_509112
 2020-05-17 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12880T C14408T G20980A A23403G

EPI_ISL_510609
 2020-05-17 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2271/2020
 ATTAAAGGTT1- C241T C3037T A4761G C10030T C13946T C14408T C18928T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510610
 2020-05-17 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2273/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G22927T A23403G G25429T G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_510611
 2020-05-17 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2274/2020
 ATTAAAGGT1- C241T C1059T C3037T C11916T C14408T C16349T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_510827
 2020-05-17 2020-08-07
 Sweden hCoV-19/Sweden/20-51531/2020
 C241T C1059T C2716T C3037T C9448T C14408T A23403G G24368T G25186T G25563T A28294C G29742T

EPI_ISL_510828
 2020-05-17 2020-08-07
 Sweden hCoV-19/Sweden/20-51534/2020
 C241T C1059T C3037T C14408T A23403G G24368T G24620T G25563T

EPI_ISL_510830
 2020-05-17 2020-08-07
 Sweden hCoV-19/Sweden/20-51538/2020
 C241T C2710T A2832G C3037T C14408T G15380T A23403G C25427T GGG28881AAC

EPI_ISL_511031
 2020-05-17 2020-08-07
 Portugal hCoV-19/Portugal/PT0772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G9128T C14408T A20742C A23403G C26447T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511905
 2020-05-17 2020-08-10
 India hCoV-19/India/IK81/2020
 ATTAAAGGTTTATACCTTCCCAG1- A26T C241T C3037T G3251A C7390T C14408T T19519C C20441A C21409T A23403G G24095T G28221T G29868A

EPI_ISL_513842 MW035999
 2020-05-17 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2421/2020
 AT1- C241T C337Y C379A C1059T C3037T G6036T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513843 MW036022
 2020-05-17 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2422/2020
 AT1- C241T C337Y C379A C1059T C3037T G6036T C14408T A23403G G25563T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_513844 MW036010
 2020-05-17 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2423/2020
 ATTA1- C241T C337Y C379A C1059T C3037T G6036T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515428
 2020-05-17 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0167/2020
 ATTAAAGGTTTATA1- C241T C379A C1059T C3037T CC14407TT A23403G G25563T

EPI_ISL_520687
 2020-05-17 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290220847/2020
 C8782T G11230T G13304A A25470G T28144C G28167A G28878A G29742A

EPI_ISL_523373
 2020-05-17 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523570
 2020-05-17 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T G10073A C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524284
 2020-05-17 2020-08-27
 United States hCoV-19/USA/UT-08521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1221T C2939T C3037T T11698C C14408T C17274T A23403G C23934A G26211T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524767
 2020-05-17 2020-08-28
 United States hCoV-19/USA/UT-08709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24751T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524819
 2020-05-17 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A716G C2094T C2416T C3037T C14408T A15596G C15720T A23403G G25563T C25792T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524910
 2020-05-17 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524931
 2020-05-17 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1178T G2117T C2401T C2509T C3037T C8917T C13994T C14408T C17733T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524934
 2020-05-17 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C12774T C14408T A22320G G22349A A23403G G25244T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524935
 2020-05-17 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524943
 2020-05-17 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524944
 2020-05-17 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C442T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524945
 2020-05-17 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C14408T G15908A C19145T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524968
 2020-05-17 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1555T C3037T A13419G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528796
 2020-05-17 2020-09-09
 United Kingdom hCoV-19/England/BHRT-24B36E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A294G C3037T C14408T A18492G A23403G GGG28881AAC A29526G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528797
 2020-05-17 2020-09-09
 United Kingdom hCoV-19/England/BHRT-24B380A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21802C A23403G GGG28881AAC CCACGCGGAGT29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528808
 2020-05-17 2020-09-09
 United Kingdom hCoV-19/England/BHRT-24B3819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5413A C14408T G21974T C23230T A23403G G25687T G25879T GGG28881AAC A29403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528818
 2020-05-17 2020-09-09
 India hCoV-19/India/TG-CCMB-GC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G4354A C6573T C14408T A23403G C25528T GC27882CT GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_530099
 2020-05-17 2020-09-10
 Spain hCoV-19/Spain/MD-R25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T C8782T A20249G A23403G C26088T T28144C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534961
 2020-05-17 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4557/2020
 C21T C241T C3037T C11200T C14408T G19072T A23403G GGG28881AAC AAAAAAAA29896-

EPI_ISL_538508
 2020-05-17 2020-09-17
 Indonesia hCoV-19/Indonesia/JK-NIHRD-MI2851/2020
 C241T C3037T C14408T A20149G G21238A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_542832
 2020-05-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-1777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C799T C1059T C3037T C7299T C10319T C14408T C14768T C21682T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542833
 2020-05-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-1778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11653T C14408T T15042C C18463T A23403G G25563T C26735T C27964T T28200C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542836
 2020-05-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-1782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C22444T G23224T A23403G G24348T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542838
 2020-05-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-1786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T T20037C A23403G G25563T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542843
 2020-05-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-1794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C799T C3037T C14408T A23403G G28827C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542846
 2020-05-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-1797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6606T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542847
 2020-05-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-1798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T T20037C A23403G G25563T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542917
 2020-05-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-1951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5806T C14408T C20474T A23403G A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542922
 2020-05-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-1961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4090T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545056
 2020-05-17 2020-09-24
 United States hCoV-19/USA/TX-HMH-1991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C3037T C4543T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545057
 2020-05-17 2020-09-24
 United States hCoV-19/USA/TX-HMH-1993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559685
 2020-05-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-48A34D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1461G A3003T C3037T C5730T C7231T C14408T G19542T A23403G G24328A C27925T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

LR824600
 2020-05-17 2020-06-16
 United Kingdom NORW-EC556
 C241T C1684T C3037T C6593T C12915T C14408T G14829T A20268G G21255T A23403G G29744A

MT810985
 2020-05-17 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0365-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G4136A C11575T C14408T C19029T A20268G A23403G C25469T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_456680
 2020-05-18 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B245B/2020
 C183T C241T C3037T G5037T C14408T T15978C A23403G G26109T GGG28881AAC

EPI_ISL_456699
 2020-05-18 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B25FE/2020
 C241T A1620G C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC

EPI_ISL_456704
 2020-05-18 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2716/2020
 C241T A2554G C2650T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C25624T GGG28881AAC

EPI_ISL_456705
 2020-05-18 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2901/2020
 C241T C1102T C3037T C8727T T9519C C12049T C14408T A23403G GGG28881AAC G28954T

EPI_ISL_456721
 2020-05-18 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2D32/2020
 C241T A1620G C3037T C4002T G4399T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC

EPI_ISL_456722
 2020-05-18 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2D50/2020
 C241T C2110T C3037T C14408T A16607G A23403G G25522A GGG28881AAC

EPI_ISL_458112 MT576529
 2020-05-18 2020-06-03
 India SARS-CoV-2/human/IND/GBRC150a/2020
 C241T C2836T C3037T C3817T C14408T C18877T G21724T C22444T A23403G G25563T C26735T G28083T C28854T

EPI_ISL_458113 MT576532
 2020-05-18 2020-06-03
 India SARS-CoV-2/human/IND/GBRC150b/2020
 C241T C2836T C3037T C3817T C4246T C14408T C18877T G21724T C22444T A23403G G25563T C26735T G28083T C28093T C28854T

EPI_ISL_460952
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T A2966T C3037T T8166C C11109T C14408T A23403G G25563T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460953
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C21811T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460954
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GGTCATGTTATG509- C1594T C3037T G7042T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460955
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460956
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460959
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T A3780G G5425T C8809T C10138T C11109T C12102T C14408T G14575T C15141T A23403G G25563T C29370T G29414T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460960
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C7113T C11109T C13458T C14408T A17615G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460961
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460962
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460963
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T C16596T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460964
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460965
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460966
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T A3780G G5425T C8809T C11109T C14408T G14575T C15141T A23403G G25563T C29370T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460968
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460969
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460970
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T G16397T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460971
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460972
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460974
 2020-05-18 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G8371T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461895
 2020-05-18 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1115C0/2020
 C241T C1862T C3037T C4002T G10097A C13536T T13649G C14408T G23012A A23403G C23731T GGG28881AAC

EPI_ISL_461896
 2020-05-18 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1115DF/2020
 C241T C274T C3037T G3259T C6312A A10948G A12075G C14408T A23403G G25552T GGG28881AAC G29810T

EPI_ISL_461898
 2020-05-18 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1115FD/2020
 C241T C1862T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_461899
 2020-05-18 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111609/2020
 G431A ATG1605- A5943G C20270T A29683T

EPI_ISL_461915
 2020-05-18 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111733/2020
 C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789-

EPI_ISL_461917
 2020-05-18 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111751/2020
 C241T A2869G C3037T C14408T A23403G T27672C GGG28881AAC C29095T T29817C

EPI_ISL_462051
 2020-05-18 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CB933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G10097A C11750T C13381T C14408T A23403G C23731T A23992T C25350T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_462070
 2020-05-18 2020-06-06
 United Kingdom hCoV-19/England/SHEF-CF595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10097A T12184C C14408T A23403G C23731T C25000T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_463087
 2020-05-18 2020-06-09
 India hCoV-19/India/ILSCV24694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2509T C3037T C3634T C9907T C14408T C15324T G15957T A23403G AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_463088
 2020-05-18 2020-06-09
 India hCoV-19/India/ILSCV24917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G CAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29686-

EPI_ISL_463089
 2020-05-18 2020-06-09
 India hCoV-19/India/ILSCV24918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G7911A C14408T A23403G TGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29758-

EPI_ISL_463102
 2020-05-18 2020-06-09
 United States hCoV-19/USA/VA-DCLS-0299/2020
 ATTA1- C241T C1059T C3037T C5622T C11916T C13252T C14408T G17117A A23403G C23604T G25563T AGTGACAACAGATGTTTCATCTCGTTGACTTTCAGGTT27191- T28678C C29358T

EPI_ISL_463103 MT609566
 2020-05-18 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0300/2020
 ATT1- C241T C1059T C3037T C9936T C11355T C11916T C13252T C14408T G18803T A23403G C23604T G25563T C29358T C29870A

EPI_ISL_463104 MT609567
 2020-05-18 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0301/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C9936T C11355T C11916T C13252T C14408T G18803T A23403G C23604T G25563T C29358T C29870A

EPI_ISL_463105 MT609568
 2020-05-18 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0302/2020
 ATT1- C241T C1059T C3037T C9936T C11355T C11916T C13252T C14408T A23403G C23604T G25563T C29358T C29870A

EPI_ISL_463106 MT609569
 2020-05-18 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0303/2020
 ATT1- C241T C1059T C3037T C9936T C11355T C11916T C13252T C14408T A23403G C23604T G25563T C29358T

EPI_ISL_463107 MT609570
 2020-05-18 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T C3037T A3722G C14408T A20163G A22252G A23403G G25644T GGG28881AAC C29272T C29870A

EPI_ISL_463108 MT609571
 2020-05-18 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0305/2020
 ATT1- C241T C313T C2455T C3037T A3722G C14408T A20163G A22252G A23403G G25644T GGG28881AAC C29272T C29870G

EPI_ISL_463109 MT609572
 2020-05-18 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0306/2020
 ATTA1- C241T C313T C1170T C3037T A3722G G11083T C14408T A20163G A22252G A23403G G25644T GGG28881AAC C29272T

EPI_ISL_463110 MT609573
 2020-05-18 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0307/2020
 AT1- C241T C313T C1170T C3037T A3722G G11083T C14408T A20163G A22252G A23403G G25644T GGG28881AAC C29272T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_463111 MT609574
 2020-05-18 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0308/2020
 ATTA1- C241T C313T C3037T A3722G C14408T A20163G A22252G A23403G G25644T GGG28881AAC C29272T

EPI_ISL_463112 MT609575
 2020-05-18 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0309/2020
 AT1- C241T C313T C1170T C3037T A3722G C14408T A20163G A22252G A23403G G25644T GGG28881AAC C29272T C29870A

EPI_ISL_463113 MT609576
 2020-05-18 2020-06-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T A3722G T7480C C14408T A20163G A22252G A23403G G23612T G25644T GGG28881AAC C29272T C29870A

EPI_ISL_469329
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/NORT-28CB81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469330
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/NORT-28CAFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2854G C3037T T4930Y G5716T C8772T C14408T T20343A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469347
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B8D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469357
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B96D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28436T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469359
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BA1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469369
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B8F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C5907T G21800K TTA21991- G23012R C23778Y T25210W C28253S G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469372
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BAA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_469386
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BA97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_469395
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BA2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13115Y C14408T A16929C A23403G G25555K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469398
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BA6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469404
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BA88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9805K G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469406
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B8E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469416
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B97C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C988T C3037T C7600T C14408T A23403G C23679T G28436T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469431
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12BAD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835Y C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T C27509Y G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469432
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B88E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A G10201S C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469435
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T G10097A C14408T G21123T C22482T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469822
 2020-05-18 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A A12180G C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471431
 2020-05-18 2020-06-21
 Belgium hCoV-19/Belgium/ULG-10196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C3037T C10755T C14408T C15324T A23403G G27478T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471819
 2020-05-18 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20798/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_471826
 2020-05-18 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20805/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_471908
 2020-05-18 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20887/2020
 A187G C241T C1938T T2698C C3037T C10432T C14408T C16376T A23403G C25916Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_472906
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1601EC/2020
 AT1- C241T C3037T C9438T G11083T C14408T GCTTTA22289- A23403G G26589T GGG28881AAC G29777T

EPI_ISL_472916
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1602CB/2020
 AT1- C241T C3037T C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_472997
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16095D/2020
 ATTA1- C241T C3037T C14408T A23403G G24077T G29747T

EPI_ISL_473032
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160C54/2020
 ATTA1- G1440A G2891A -11075TTT G11083T G14118A C28311T G28851T

EPI_ISL_473125
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-162803/2020
 C241T A489G C3037T T5465C G6387A C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC

EPI_ISL_473241
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163082/2020
 A1- C241T C3037T A5209G C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_473347
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F8CE/2020
 C241T C3037T C14408T A23403G GGG28881AAC TACGATCGAGTGTACAGTGAACAATGC29748-

EPI_ISL_473717
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1812T A2015G C3037T C10798A G12565T C13862T C14408T G20730T C21639T A23403G G24577T C25378T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473815
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5196/2020
 C241T C3037T C13384T C14408T A18902C A23403G G26615T C27644A GGG28881AAC A29767C

EPI_ISL_473907
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6188/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473908
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6192/2020
 C241T G1590T C3037T C10798A C13862T C14408T C20148T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473909
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6193/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_473910
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6194/2020
 C241T C1059T C3037T T7814C C14408T G18213T A18818G A21137G A23403G G25563T

EPI_ISL_473911
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6204/2020
 C241T C835T C3037T A3881G C14408T G22073T A23403G C25350T

EPI_ISL_473912
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6205/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473913
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6208/2020
 C241T C3037T C10798A C13862T C14408T A23403G C28836T

EPI_ISL_473914
 2020-05-18 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6209/2020
 C241T C1059T C3037T T7814C C14408T G18213T A18818G A23403G G25563T

EPI_ISL_475520
 2020-05-18 2020-06-23
 Sweden hCoV-19/Sweden/20-14734/2020
 C241T C3037T A3297T C14408T A23403G GGG28881AAC G29777T

EPI_ISL_475943
 2020-05-18 2020-06-25
 Singapore hCoV-19/Singapore/412/2020
 C6310A C6312A G11083T C13730T C19524T C23185T C23929T G25302A C26549T C28311T AAAAAAAAAAAA29892-

EPI_ISL_476086 LR824487 LR861066
 2020-05-18 2020-06-25
 Switzerland 140011
 C241T C3037T T11449C C14408T A19298W A20979G C21622T A23403G C25047Y GGG28881AAC

EPI_ISL_476087 LR824485 LR861068
 2020-05-18 2020-06-25
 Switzerland 140017
 C241T C3037T T7297Y A12061R C12754T C14408T G19962T C22347S T22441Y A23403G C28153T

EPI_ISL_476088 LR824492 LR861055
 2020-05-18 2020-06-25
 Switzerland 140018
 C241T C3037T C3695T T3707C C14408T C15324T C17502T G22471R A23403G C27925T C29642T

EPI_ISL_476089 LR824494 LR861069
 2020-05-18 2020-06-25
 Switzerland 140019
 C222Y C241T C3037T G6611A C10301A C14408T A23403G GGG28881AAC

EPI_ISL_476090 LR824490 LR861058
 2020-05-18 2020-06-25
 Switzerland 140020
 C241T C906Y G2495R C3037T C5192Y C6648T G6671K C6696Y C13730T C14408T C16349S G16573K C19317Y CA20148YW C22347S T22397W A23403G C23673Y A26487W T27384C C28471M C28491H A28701W GGG28881AAC A29155R C29253Y G29540T

EPI_ISL_476091 LR824493 LR861067
 2020-05-18 2020-06-25
 Switzerland 140025
 C241T C3037T G3638R C3821Y G4196R C4737Y T5061Y A5250M A5257W A6423R G6463R G6744K T6890W A8773R C9131Y G9890K C10784Y G11521S C11741Y A11973W A12285R C14408T G16451S C17550Y C19113Y T19404Y A19430W T19839C A23403G A24853W C24876Y A24901W C25416Y C26208Y A26544M T26848Y C27559Y C28311Y GGG28881AAC G28985R C29718Y C29733Y

EPI_ISL_476567
 2020-05-18 2020-06-25
 Argentina hCoV-19/Argentina/Heritas_HG015/2020
 C241T C1059T C3037T C10450T C11916T C14408T C18998T A23403G C25160T G25563T C28863T G29540A

EPI_ISL_476756
 2020-05-18 2020-06-25
 United States hCoV-19/USA/MN-MDH-1171/2020
 A1- C241T C1059T C3037T T11641C G12274A G12278T C13019T C14408T A23403G C23638T G25563T A27821G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476894
 2020-05-18 2020-06-26
 India hCoV-19/India/DRDE_4195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C313T C2334T C3037T C5700A T8022K C14408T A23116W A23403G C24213T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477261
 2020-05-18 2020-06-29
 India hCoV-19/India/InStem_NCBS_0061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C823T C3037T G8144T -12878CTACGG C14408T T16419G C18877T A23403G G23501T C25046T G25563T C26735T G29779T AAAAAA29898-

EPI_ISL_477288
 2020-05-18 2020-06-29
 United States hCoV-19/USA/MN-MDH-1198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_477297
 2020-05-18 2020-06-29
 United States hCoV-19/USA/MN-MDH-1208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T T22552C A23403G C23987T G25563T C25889T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_477787
 2020-05-18 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B2C44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5321C C8956T G10262A C14408T T19839C C22995T A23403G C26456T C27425T ACAAATT27548- TTAGCACTCAATTTGCTTTTGC27569- A27669G GGG28881AAC C29614T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_477788
 2020-05-18 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B2C62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5321C C8956T G10262A C14408T T19839C C22995T A23403G C26456T C27425T ACAAATT27548- TTAGCACTCAATTTGCTTTTGC27569- A27669G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_477789
 2020-05-18 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B2D23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5321C C8956T G10262A A10323G C14408T T19839C C22995T A23403G C26456T C27425T ACAAATT27548- TTAGCACTCAATTTGCTTTTGC27569- A27669G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_477792
 2020-05-18 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B2DE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5321C C8956T G10262A C14408T T19839C C22995T A23403G C26456T C27425T ACAAATT27548- TTAGCACTCAATTTGCTTTTGC27569- A27669G GGG28881AAC C29614T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_478125
 2020-05-18 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4288T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478143
 2020-05-18 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6217G C14408T T17164G G22708T C22879A A23403G G28712A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479535
 2020-05-18 2020-06-30
 India hCoV-19/India/NIV-36405/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC C29085T T29512C AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480369 MT772538
 2020-05-18 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482093
 2020-05-18 2020-07-03
 United Kingdom hCoV-19/England/HECH-259A097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2005T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482116
 2020-05-18 2020-07-03
 United Kingdom hCoV-19/England/HECH-259A0C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1195C T1918C C3037T C9438T C14408T C18877T A23403G G25563T C27610T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482439
 2020-05-18 2020-07-03
 United States hCoV-19/USA/OR-PROV-194/2020
 C241T C1059T C3037T C14408T C18086T A23403G G25563T A26528T A28492T

EPI_ISL_482503
 2020-05-18 2020-07-04
 India hCoV-19/India/NCDC1733_CSIR-IGIB/2020
 ATTAAAGGTT1- AA537WW G2081K C2094Y C6310M C6312A G12685K C13730T C23929T AG24389MS C27367Y C28311T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_482509
 2020-05-18 2020-07-04
 India hCoV-19/India/NCDC1873_CSIR-IGIB/2020
 C1059Y G2081K C2094Y G3338K C6310M C6312A C7923M A7927M G12685K C13730T A15435R C15509M C23929T AG24389MS T24622Y C28311T G29405K CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_482512
 2020-05-18 2020-07-04
 India hCoV-19/India/NCDC1895_CSIR-IGIB/2020
 C241T C3037T C6606Y C10039Y G11405S T12022Y C12459T C13730Y C14408Y C22444T A23403G G25563K C26735T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482513
 2020-05-18 2020-07-04
 India hCoV-19/India/NCDC1934_CSIR-IGIB/2020
 C241Y C842M C2623Y C3037Y C6310M C6312A C11878Y G12685K C13730T A15435R C15509M T15513W C23929Y T24622Y C28311Y C28854Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482515
 2020-05-18 2020-07-04
 India hCoV-19/India/NCDC1957_CSIR-IGIB/2020
 A1- C1059Y G2081K T2087Y C2094Y C3037Y C3768Y C6310M C6312A G10261R G12685K C13730T C14408Y C15509M A23403R C23929Y AG24389MS T24622Y C28311Y GGG28881RRS GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_482547
 2020-05-18 2020-07-04
 India hCoV-19/India/NCDC2192_CSIR-IGIB/2020
 C241Y C842M A1109R G2081K C2094Y C3037Y G10261R C13730Y C14408Y C18877Y C22444Y A23403G AG24389MS G25563K C26735Y C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_482696
 2020-05-18 2020-07-05
 Singapore hCoV-19/Singapore/549/2020
 C6310A C6312A G11083T T11296C C13730T C19524T C23185T C23929T C25002T G25687T C28311T

EPI_ISL_482697
 2020-05-18 2020-07-05
 Singapore hCoV-19/Singapore/550/2020
 C6312A C8139T C8832T G11083T C13730T C23929T C28311T

EPI_ISL_482698
 2020-05-18 2020-07-05
 Singapore hCoV-19/Singapore/551/2020
 C6310A C6312A A9419G G11083T C13730T T14483C C19524T C21721T C23929T C28311T

EPI_ISL_482947
 2020-05-18 2020-07-06
 United States hCoV-19/USA/MN-MDH-1226/2020
 ATTAAAGGT1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_482948
 2020-05-18 2020-07-06
 United States hCoV-19/USA/MN-MDH-1227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_482949
 2020-05-18 2020-07-06
 United States hCoV-19/USA/MN-MDH-1228/2020
 ATTA1- C225T C884T G1397A C5512T G8653T G8762A C9438T C11074T G11083T C11674T A19073G C21707T C25708T G27915T T28688C C28868T C29077T G29742T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_482950
 2020-05-18 2020-07-06
 United States hCoV-19/USA/MN-MDH-1229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1150T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_482951
 2020-05-18 2020-07-06
 United States hCoV-19/USA/MN-MDH-1230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C934T C1059T C1150T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482952
 2020-05-18 2020-07-06
 United States hCoV-19/USA/MN-MDH-1231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482953
 2020-05-18 2020-07-06
 United States hCoV-19/USA/MN-MDH-1232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_482954
 2020-05-18 2020-07-06
 United States hCoV-19/USA/MN-MDH-1233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1150T C1812T C3037T C6026T C10319T G11083T C13665T C14408T A23403G G25563T C27964T C28531T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_482955
 2020-05-18 2020-07-06
 United States hCoV-19/USA/MN-MDH-1234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G C24381T G25563T C27964T C28531T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_482956
 2020-05-18 2020-07-06
 United States hCoV-19/USA/MN-MDH-1235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T G2664T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_484680
 2020-05-18 2020-07-08
 United Kingdom hCoV-19/Scotland/EDB6603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C13968T C14189T C14408T C17690T C18877T A23403G T24923C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487541
 2020-05-18 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5312T C9603T C12525T C14408T C21846T A23403G G25563T G27852T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487566
 2020-05-18 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9994T C14408T C17127T A20268G TTA21991- A23403G A24121G C28854T G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487573
 2020-05-18 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G27798K G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487629
 2020-05-18 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B87F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7165T C14408T T22308C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488874
 2020-05-18 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FF1A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489894 EPI_ISL_491090
 2020-05-18 2020-07-14
 Romania hCoV-19/Romania/ROSV_8990/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T T9697C C14408T A20268G A23403G T23596C G28812A C29835- TAATAGCTTCTTAGGAG29848- GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_490370
 2020-05-18 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A1F9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C12621T C14408T G19999T A23403G GGG28881AAC C29870A

EPI_ISL_490371
 2020-05-18 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A1FAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T T6085G C8655T T9519C G11401T C14408T C15237T A23403G C26645T GGG28881AAC C29870A

EPI_ISL_490378
 2020-05-18 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A2167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T C18744T A18978R A23403G G25563T A29391G A29903-

EPI_ISL_490469
 2020-05-18 2020-07-15
 United Kingdom hCoV-19/England/NORT-29EA07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3903T C14408T A16534G A23403G G25429T G29543T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493626
 2020-05-18 2020-07-21
 United Kingdom hCoV-19/England/PORT-2CFB19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C9857T C14408T C16887T C21292T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493682
 2020-05-18 2020-07-21
 United Kingdom hCoV-19/England/SHEF-C591B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C23185T A23403G C24897T GGG28881AAC C29259T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493947
 2020-05-18 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12871A C14408T C21207T C22879A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493949
 2020-05-18 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A T11075C C13862T T14392G C14408T C14937T A23403G T27296C C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494303
 2020-05-18 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1688FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8944C C14408T C14741T A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_494694
 2020-05-18 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1623/2020
 ATTAAAGGTTT1- C241T C3037T C4475T C14408T A20268G A23403G C28854T A29350G

EPI_ISL_495386 MT791922
 2020-05-18 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0480/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C14408T G18898T A23403G G25249C G25563T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29730-

EPI_ISL_495805 MT821743
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1355/2020
 AT1- C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495806 MT821602
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1356/2020
 AT1- C241T A949G C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495809 MT821641
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1359/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C25710T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495810 MT821762
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1360/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_495812 MT821677
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1362/2020
 A1- G354A C2070T C8782T C17747T A17858G C18060T G22319T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_495814 MT821668
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1364/2020
 ATTAAAGGTTT1- G354A C2070T C8782T T11104C C17747T A17858G C18060T C24969T C26111T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495815 MT821577
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1365/2020
 AT1- C241T C3037T C14408T C15933T C16178T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495816 MT821640
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1366/2020
 ATTAAAGGTTT1- G354A C2070T C8782T C15714T C17747T A17858G C18060T G22319T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495817 MT821694
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1367/2020
 ATTAAAGGTTTAT1- G354A C2070T A3148G C8782T G14028T C17747T A17858G C18060T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495819 MT821626
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1369/2020
 AT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495820 MT821690
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1370/2020
 A1- G354A C2070T C8782T C17747T A17858G C18060T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495822 MT821660
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1372/2020
 AT1- G354A C2070T C8782T C17747T A17858G C18060T G22319T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_495823 MT821597
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1373/2020
 ATTAAAG1- C241T C1060T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495824 MT821725
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1374/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C14408T T21363C A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495825 MT821765
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1375/2020
 AT1- C241T C1059T C3037T C14408T C18788T C18828T C23029T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_495826 MT821687
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1376/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C18788T C18828T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495836 MT821685
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1386/2020
 AT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495837 MT821741
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1387/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495848 MT821535
 2020-05-18 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1398/2020
 ATTAAAGG1- C241T C3037T A5538T T6025C C7604T C14408T G16813A T21802C A23403G T25783C C26022T C27059T G27676C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496564
 2020-05-18 2020-07-24
 India hCoV-19/India/NCCS_NR1709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T3011C C3037T C3634T C14408T C15324T A23403G

EPI_ISL_496565
 2020-05-18 2020-07-24
 India hCoV-19/India/NCCS_NR1715/2020
 A1- A4G T25C C241T T3011C C3037T C3634T G4300T C14408T C15324T A23403G

EPI_ISL_499985
 2020-05-18 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A1229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6336T C8683T C13335T C14408T A20268G A23403G G26173T C28854T

EPI_ISL_500954
 2020-05-18 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106C50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9443T G11083T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500966
 2020-05-18 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106C9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177Y C14408T A23403G A25448G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500978
 2020-05-18 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106BF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500989
 2020-05-18 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106CAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC G29745C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500997
 2020-05-18 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106C05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8802T C10594T C14408T G17325A A17342G A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500998
 2020-05-18 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106C32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T T2432C C3037T C14408T C17004T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501000
 2020-05-18 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106C14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C18601Y A23403G C23577Y GCACTCAATTTGCTT27572- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501022
 2020-05-18 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106B62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9037C C11514T C14408T C23185T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501026
 2020-05-18 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106C6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9037C C11514T C14408T C23185T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501034
 2020-05-18 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106C7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5730T G11083T C14408T A23403G G28325T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501058
 2020-05-18 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106C8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T A5311G C11653T C12049T C14408T A23403G G26640T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501063
 2020-05-18 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106C23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A25448G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501067
 2020-05-18 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106B80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C17004T G21624R A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507273
 2020-05-18 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15817S/2020
 ATTA1- C241T C3037T A3523C T11212C C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507276
 2020-05-18 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII15950V/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_509114
 2020-05-18 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G9314T G11083T C14408T G16912T C18377T A23403G G25563T G29553A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509115
 2020-05-18 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1267T C3037T C9541T G11083T G12802A C14408T A23403G C27059T GGG28881AAC AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509116
 2020-05-18 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12880T C14408T G20980A A23403G

EPI_ISL_509839 MT846523
 2020-05-18 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T C18312T T19839C A23403G C23707T G25249T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509954 MT846641
 2020-05-18 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4403A T8060G C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509955 MT846642
 2020-05-18 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9319T C14408T C17746T A22504C A23403G C24588T G25563T C29733T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509956 MT846643
 2020-05-18 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C7764T C14408T A23403G A23592G G25563T C25904T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509957 MT846644
 2020-05-18 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G3004T C3037T C12025T C14408T C18312T T19839C A23403G C23707T G25249T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510612
 2020-05-18 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2275/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G22927T A23403G G25429T G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_510613
 2020-05-18 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2276/2020
 ATT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAA29890-

EPI_ISL_510615
 2020-05-18 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_510616
 2020-05-18 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_510620
 2020-05-18 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2283/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_510621
 2020-05-18 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_510623
 2020-05-18 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C11916T C14408T C16650T T18408C A20675T A23403G G25563T G29179T G29779T TCTTAGGAGAATG29856-

EPI_ISL_510831
 2020-05-18 2020-08-07
 Sweden hCoV-19/Sweden/20-51570/2020
 C241T C3037T G9802T C10156T G12202T A12949G T13906C C14195A C14408T A23403G T28245G T28251C CA28253GC G29747T

EPI_ISL_510838
 2020-05-18 2020-08-07
 Sweden hCoV-19/Sweden/20-51733/2020
 C241T C2037T C3037T C13176T C14408T A23403G GGG28881AAC

EPI_ISL_512158
 2020-05-18 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1135T C3037T C12049T C14408T A20268G A23403G C25578T C28854T T29293C

EPI_ISL_512164
 2020-05-18 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6573T G13812T C14408T G20005A A20268G A23403G C28854T

EPI_ISL_512166
 2020-05-18 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1753/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G13812T C14408T G20005A A20268G A23403G C28854T

EPI_ISL_512188
 2020-05-18 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3226C T14361C C14408T C20133T A20268G A23403G C28854T

EPI_ISL_512203
 2020-05-18 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T T14361C C14408T A20268G A23403G C28854T

EPI_ISL_512206
 2020-05-18 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C2062T C3037T C7945T T10153A CC14407TT A23403G G25563T C28791T

EPI_ISL_512339
 2020-05-18 2020-08-11
 United Kingdom hCoV-19/England/EXET-13796E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C100A C241T C3037T C14408T A23403G G24577A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_513822 MW036071
 2020-05-18 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2391/2020
 C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513846 MW036024
 2020-05-18 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2425/2020
 AT1- C241T C1059T G1413A C3037T C14408T A22474R C22502A A23403G G25563T C29743T G29779T

EPI_ISL_513847 MW036047
 2020-05-18 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2426/2020
 A1- A136R C1059T G1413A C3037T C14408T C22502A A23403G G25563T C29743T G29779T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513894 MW036069
 2020-05-18 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2509/2020
 ATT1- C241T C3037T C9430T C14408T C17977A G19969A A20268G A23403G C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_514152 MT890285
 2020-05-18 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0806/2020
 A1- C241T C3037T C6286T A6657C C14408T C18877T A23403G C24358T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514153 MT890286
 2020-05-18 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0807/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T C21707T T22408C A23403G G25563T C29296T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515429
 2020-05-18 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0171/2020
 ATTAAA1- C241T C379A C829T C1059T C3037T T9070C T10033C C11020T CC14407TT C20436A C21234A A23403G G25563T C29762T

EPI_ISL_515430
 2020-05-18 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0172/2020
 ATT1- C241T C379A C1059T C3037T G9652T C11102T CC14407TT C19185T A23403G G25563T C29835T

EPI_ISL_515431
 2020-05-18 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0173/2020
 ATT1- C241T C379A C1059T C3037T G9652T C11102T CC14407TT C19185T A23403G G25563T C29835T

EPI_ISL_515432
 2020-05-18 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0174/2020
 ATTA1- C241T C379A C1059T C3037T G9652T C11102T CC14407TT C19185T A23403G G25563T C29835T

EPI_ISL_515433
 2020-05-18 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0175/2020
 ATT1- C241T C379A C1059T C3037T G9652T C11102T CC14407TT C19185T A23403G G25563T C29835T

EPI_ISL_515434
 2020-05-18 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0176/2020
 ATTA1- C241T G273A C379A C1059T C3037T G9652T C11102T CC14407TT G14430A A23403G G25563T

EPI_ISL_515436
 2020-05-18 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T C379A C1059T C3037T G9652T C11102T CC14407TT C22224T A23403G G25563T

EPI_ISL_520688
 2020-05-18 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290222605/2020
 C4116T C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_520689
 2020-05-18 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290223961/2020
 C8782T C10277T G11230T C21034G T28144C G28167A G28878A G29742A

EPI_ISL_520690
 2020-05-18 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290224549/2020
 G5194T C8782T G11230T T14394C G25273T T28144C G28167A T28465C G28878A G29742A

EPI_ISL_523179
 2020-05-18 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1572T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523407
 2020-05-18 2020-08-26
 Netherlands hCoV-19/Netherlands/NH-EMC-38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T C4158T C14408T A23403G A24862G A27674T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523571
 2020-05-18 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C10029T C11109T C12415T C14408T G17790T T19159G A23403G C25006T G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524010
 2020-05-18 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-15911V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T A3523C T11212C C14408T C22227T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524262
 2020-05-18 2020-08-27
 United States hCoV-19/USA/UT-08495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A716G C2094T C2416T C3037T C14408T A23403G C25466T G25494T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524266
 2020-05-18 2020-08-27
 United States hCoV-19/USA/UT-08499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4090T C8078T C14408T C16376T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524271
 2020-05-18 2020-08-27
 United States hCoV-19/USA/UT-08506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G25563T C27964T G28373T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524275
 2020-05-18 2020-08-27
 United States hCoV-19/USA/UT-08511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C717T T833C C1059T C3037T C14408T G15908A C19145T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524277
 2020-05-18 2020-08-27
 United States hCoV-19/USA/UT-08514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T G28899A G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524281
 2020-05-18 2020-08-27
 United States hCoV-19/USA/UT-08518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1178T G2117T C2401T C2509T C3037T C8917T C13994T C14408T C17733T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524288
 2020-05-18 2020-08-27
 United States hCoV-19/USA/UT-08525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C6629T C11379T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524292
 2020-05-18 2020-08-27
 United States hCoV-19/USA/UT-08529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C11494T C14408T G15908A C19145T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524293
 2020-05-18 2020-08-27
 United States hCoV-19/USA/UT-08530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C1514T C3037T C6541T C11379T C14408T A22320G A23403G G25444T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524297
 2020-05-18 2020-08-27
 United States hCoV-19/USA/UT-08536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A716G C2094T C2416T C3037T C14408T A15596G C15720T A23403G G25563T C25792T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524311
 2020-05-18 2020-08-27
 United States hCoV-19/USA/UT-08552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A716G C2094T C2416T C3037T C14408T A15596G C15720T A23403G G25563T C25792T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524333
 2020-05-18 2020-08-27
 United States hCoV-19/USA/UT-08579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4148T C5184T G6476T G6483T C7044T C14408T A23403G C26256T G28628T C29668T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524354
 2020-05-18 2020-08-27
 United States hCoV-19/USA/UT-08612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A C19145T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524771
 2020-05-18 2020-08-28
 United States hCoV-19/USA/UT-08714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2939T C3037T G11083T T11698C G12395A C14408T G16935T G19567A A20067G C23230A A23403G T25780A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524960
 2020-05-18 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T A716G C2094T C2416T C3037T C14408T C15579T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525242
 2020-05-18 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T G3518T C13536T C14408T A23403G G25429T T29672C G29717A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530100
 2020-05-18 2020-09-10
 Spain hCoV-19/Spain/MD-R50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A7024T C8782T G9968A A21643T C26088T C26681T T28144C G28851T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530188 MT997710
 2020-05-18 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C539T C1059T C3037T A3181G C4795T C14178T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_530189 MT997711
 2020-05-18 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C539T C1059T C3037T C14408T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_532140
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-53C446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2854G C3037T G5716T C8772T C14408T G16014T A23403G T24799C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532151
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5318CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A15860G C16332T C18687T C20389T A23403G C23683T C23731T G28580T GGG28881AAC C29514T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532152
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-538EE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C2644T C3037T C14408T A23403G G25687T C26313T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532159
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-53983E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6582T C7321T C7834T C14408T A23403G GGG28881AAC C29284T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532160
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-53DABC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T C3373A C14408T C14688T A23403G G27706T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532166
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5313BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T14331C C14408T A15278G A23403G C25350T C27389T G28487A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532171
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-53204C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2583T C3037T C9430T G10097A C10239M C14408T C17012T A23403G C23731T G28580T GGG28881AAC ACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29707-

EPI_ISL_532173
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-53CB32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6582T C7321T C12484T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532178
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-53D3A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2110T C3037T C5884T C6990T C14408T A23403G C25469T G26211T G26951K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532180
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-53A554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21624T A23403G C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532185
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-52DACE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18225T A20268G A23403G A25605G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532191
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-53E80C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2583T C3037T C9430T G10097A C14408T C17012T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532195
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-53102F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2110T C3037T C5884T C6990T A10770G C14408T A23403G C25469T G26211T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532198
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-53E4AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2583T C3037T C9430T G10097A C14408T C17012T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532209
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-539E96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21624T A23403G C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532210
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-5303FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18431Y C18747T T21369C C22879A A23403G G28857T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532217
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5317C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532220
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-538C9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A17986G A23403G G24095T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532230
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-532792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10317G C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532231
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-52FAAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2139C C3037T G4223T T5098C C8947T C14408T A23403G G27750T C29171T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532233
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-53DA8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4410T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532234
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-537F1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6926T C14408T C21811T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532237
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5313AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532239
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-52DD3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3338T C3511T C14408T A22301G A23403G G29508A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532248
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-53E918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C2416T C3037T G4207T G8371T C14408T G14653T C16596T A23403G G25563T A29641T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532251
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-532765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A22390T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532254
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-537E01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2995A C3037T C9693T C14408T A23403G C25350T C27509T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_532255
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-52E78A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T C3373A C9714T C14408T C14688T A23403G C25708T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532257
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-537A1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532258
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-530CC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T C3037T T3100G G10097A C14408T C16806T C19955T A23403G C23731T G25947T T27570C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532261
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-53931F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11335T C14408T A23403G C25350T G26690T -27404TTT C27406T A28296G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532262
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5319CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9491T C14408T A23403G T23487K GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532263
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-530ECC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11266K C14408T C18747T T21369C C22879A A23403G G28857T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532265
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-53C7F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A26927G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532272
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-53A5AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4288T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532273
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-533861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C2644T C3037T C7732T C14408T A23403G G23948T G25687T C26313T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532275
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-530248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18747T T21369C C22879A A23403G G28857T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532278
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-532D09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4288T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532279
 2020-05-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-53C2C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C12534T C14408T C21342T A23403G G25563T T27324G G28812T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534959
 2020-05-18 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4539/2020
 C241T C3037T C6525T C14408T T18398C C22482A A23403G T24274C G24781T C25344T GGG28881AAC

EPI_ISL_540921 MW039450
 2020-05-18 2020-09-21
 United States SARS-CoV-2/human/USA/WY-WYPHL-20015627/2020
 ATTA1- C241T C466T C1059T C3037T T4888A C14408T A17691G A23403G G25563T G28727T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_542909
 2020-05-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6843T C10319T C14408T T17353C A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542921
 2020-05-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542924
 2020-05-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542929
 2020-05-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C14657T C22432T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542930
 2020-05-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10031G A13790G C14265T C14408T A23403G G28827C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542934
 2020-05-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-1981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8499T C14408T C18060T T18231C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545051
 2020-05-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-1983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A7863G C10319T C14408T A23403G G25563T G25641T C27964T C28849T C28868T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545052
 2020-05-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-1985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8499T C14408T C18060T T18231C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545053
 2020-05-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-1986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545062
 2020-05-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-2003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545064
 2020-05-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-2005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545238
 2020-05-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-2308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4240C T6130C C10319T C14408T C16308T C16694T A23403G G25563T A25986T C26882T G27084A C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545274
 2020-05-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-2381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559378
 2020-05-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A1DBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2094Y C3037T G10097A C14408T C18131T A23403G C23731T T26442C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559422
 2020-05-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A1D06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7173T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559426
 2020-05-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A20A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T C14408T C21454A A23403G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559671
 2020-05-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-48ADE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560392
 2020-05-18 2020-09-29
 Lithuania hCoV-19/Lithuania/C20-05-R11/2020
 C241T C1593T C3037T C14408T G21624T A23403G C27476T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_560399
 2020-05-18 2020-09-29
 Lithuania hCoV-19/Lithuania/C20-05-R3/2020
 ATTAA1- A6T A12G AC14TA T17C CCC19GGG G23A TA25GT C28T C241T C1593T C3037T G12940T C14408T G21624T A23403G C27476T GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_560401
 2020-05-18 2020-09-29
 Lithuania hCoV-19/Lithuania/C20-05-R5/2020
 -2AAGA C241T C1593T C3037T C14408T G21624T A23403G C27476T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_560402
 2020-05-18 2020-09-29
 Lithuania hCoV-19/Lithuania/C20-05-R7/2020
 ATTAAA1- C241T C1593T C3037T C14408T G21624T A23403G GGG28881AAC C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

LR877330
 2020-05-18 2020-08-12
 Poland covid_hub_pl_ibch_0001
 

LR877388
 2020-05-18 2020-08-17
 Poland covid_hub_pl_ibch_0006
 

MT786943
 2020-05-18 2020-07-21
 United States SARS-CoV-2/human/USA/COVID20-0204/2020
 ATTA1- C241T C1059T C3037T A5957G C14408T C16349T C17676T C20405T C21110T A23403G G25563T C27964T C28846T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MT797761
 2020-05-18 2020-07-24
 United States SARS-CoV-2/human/USA/COVID20-0203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAA1- C241T C1059T C3037T C14408T C16349T C17676T C21110T A23403G G25563T C27964T C28846T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT797762
 2020-05-18 2020-07-24
 United States SARS-CoV-2/human/USA/COVID20-0207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAA1- C241T C1059T C3037T C14408T C16349T C17676T C21110T A23403G G25563T C27964T C28846T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT810895
 2020-05-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1623-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4475T C14408T A20268G A23403G C28854T A29350G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_447906
 2020-05-19 2020-05-19
 Thailand hCoV-19/Thailand/Siriraj_1/2020
 C241T C3037T A6719G C14408T A20268G A23403G C28854T T29791C AAAAAAAAAAAA29892-

EPI_ISL_447907
 2020-05-19 2020-05-19
 Thailand hCoV-19/Thailand/Siriraj_2/2020
 C241T C1915T C3037T C14408T A20268G A23403G C27661T C28854T T29791C AA29885CC AAAAAAAAAAAA29892-

EPI_ISL_447908
 2020-05-19 2020-05-19
 Thailand hCoV-19/Thailand/Siriraj_5/2020
 A895G C2942T G4390T C8782T C9598T G20134T G24047A G27877T T28144C AAAAAAAAAAAA29892-

EPI_ISL_447985
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD2A4/2020
 C241T C3037T C14408T A23403G C23896T GGG28881AAC

EPI_ISL_447986
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD2B3/2020
 C241T A2775G C2940T C3037T C14408T C21648T A23403G C24372T

EPI_ISL_448014
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AD81B/2020
 C241T C3037T C4002T T4066C A9650G G10097A C13536T C14408T A23403G C23731T A25948G GGG28881AAC T29288C

EPI_ISL_448038
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1ADB6D/2020
 C241T C3037T C14408T A23403G C26447T G27281T GGG28881AAC

EPI_ISL_448072
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AECE1/2020
 C241T C3037T C14408T A23403G C26447T G27281T GGG28881AAC

EPI_ISL_448073
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AECF0/2020
 C241T C3037T C14408T T14565A A23403G C26447T G27281T GGG28881AAC

EPI_ISL_448085
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AF5E5/2020
 C241T C3037T C3787T C3903T C14408T A23403G G27877T G28086T GGG28881AAC

EPI_ISL_448095
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/CAMB-1AFFE7/2020
 C241T C1170T C3037T GTT11283- C11379T C14408T C16247T A23403G GGG28881AAC

EPI_ISL_448228
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8727/2020
 C241T C3037T T11313C C14408T A23403G GGG28881AAC

EPI_ISL_448236
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E87EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T A9634T C14408T C18086T G22992A A23403G GGG28881AAC

EPI_ISL_448240
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8842/2020
 ATTA1- C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_448241
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8851/2020
 ATTAAAGGTTTA1- C241T C3037T C13957T C14408T A23403G C27945Y C28435T

EPI_ISL_448247
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E88D9/2020
 C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_448250
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8921/2020
 C241T C3037T C13432T C14408T A23403G GGG28881AAC

EPI_ISL_448253
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E895E/2020
 ATTAAAGGTTT1- C241T C3037T C14408T G22992A A23403G GGG28881AAC C29199Y

EPI_ISL_448260
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E89D6/2020
 A1- C241T C2940T C3037T C9565Y A13859C C14408T C21812T A23403G

EPI_ISL_448261
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E89E5/2020
 ATT1- C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_448263
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8A00/2020
 A1- C241T C3037T C3866A C14408T A23403G GGG28881AAC

EPI_ISL_448264
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8A1F/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448271
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8A88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G22992A A23403G GGG28881AAC

EPI_ISL_448306
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8D52/2020
 ATTA1- C241T C2940T C3037T C14408T C21648T A23403G

EPI_ISL_448308
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8D70/2020
 C241T C3037T C6628Y C12915T C14408T A20268G A23403G

EPI_ISL_448548
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACF54/2020
 C241T C3037T C5826T C14408T A23403G C27536A GGG28881AAC

EPI_ISL_448550
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ACFDC/2020
 A1515G C9223T C10277T G11083T C14805T T17247C G26144T

EPI_ISL_448563
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD0F6/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448567
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD15D/2020
 C241T C2142T C3037T C14408T C19170T G19509A A23403G G25650T G26951T G27948T GGG28881AAC

EPI_ISL_448570
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD21E/2020
 C241T C3037T C14408T C16260T T19839C A23403G C26681T ATT27759- GGG28881AAC A29865R -29870G A29882G

EPI_ISL_448571
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD23C/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_448572
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD25A/2020
 C241T C2142T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_448573
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD296/2020
 C241T C3037T C14408T A15257G A23403G C27167T GGG28881AAC

EPI_ISL_448579
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD3DF/2020
 C241T C3037T A11519G C14408T A23403G G28086T GGG28881AAC A29888G A29892G A29895G A29899G

EPI_ISL_448580
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD454/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_448584
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD4FA/2020
 C241T C3037T C7749Y C14408T A20796G A23403G G24038T GGG28881AAC

EPI_ISL_448585
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD515/2020
 C241T C3037T C4582T C14408T A23403G GGG28881AAC

EPI_ISL_448587
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD67C/2020
 C241T C3037T C14408T G22592T A23403G GGG28881AAC

EPI_ISL_448588
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD6B8/2020
 C241T C3037T C14408T A23403G GGG28881AAC G28895T

EPI_ISL_448589
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD6D6/2020
 A1515G C9223T G11083T T14191C C14805T T17247C A20280G G26144T CCACGCGGAGT29738-

EPI_ISL_448590
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD6F4/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_448591
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD71F/2020
 C241T C2142T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_448592
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD73D/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448593
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD75B/2020
 C241T C3037T C10818T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_448594
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD779/2020
 C241T C3037T A5852G C6026T C14408T A23403G GGG28881AAC

EPI_ISL_448595
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD7B5/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448596
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD7D3/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_448597
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD81C/2020
 C241T C3037T C6870T C14408T A23403G GGG28881AAC

EPI_ISL_448598
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD83A/2020
 C241T C3037T C5340T C14408T A23403G G25429T

EPI_ISL_448599
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD858/2020
 C241T C3037T C14408T A23403G GGG28881AAC A29899V

EPI_ISL_448600
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD876/2020
 C241T G529T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448601
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD894/2020
 C241T G2731A C3037T G10097A T13216G C14408T T19665A A23403G C23731T GGG28881AAC

EPI_ISL_448602
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD8D0/2020
 C241T C527T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448603
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD8FE/2020
 C241T C3037T G11083T C14408T C21762T A23403G TTTGTGCTT27785- GGG28881AAC

EPI_ISL_448604
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD937/2020
 C241T C3037T C14408T C18828T A23403G G24998A G27238T G28077T

EPI_ISL_448605
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD973/2020
 C241T C3037T C14408T A20796G A23403G G24038T GGG28881AAC

EPI_ISL_448606
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD991/2020
 C241T C3037T C14408T A23403G G25429T C26461T A29891R A29893R A29895R A29897R

EPI_ISL_448607
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD9BF/2020
 C241T C3037T C14408T A23403G T25842C GGG28881AAC

EPI_ISL_448608
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AD9DD/2020
 C241T G2731A C3037T G10097A T13216G C14408T T19665A A23403G C23731T GGG28881AAC

EPI_ISL_448609
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADA16/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448610
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADA34/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_448611
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADA9E/2020
 C241T C3037T T6769C C14408T A20796G A23403G G24038T GGG28881AAC G29050A

EPI_ISL_448612
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADABC/2020
 A1515G C9223T C10277T G11083T C14805T T17247C G26144T T27402C

EPI_ISL_448613
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADADA/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_448614
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADAF8/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC G29706T A29883R A29898R

EPI_ISL_448616
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADB31/2020
 C241T C3037T C14408T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_448617
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADB5F/2020
 A2480G C2558T G11083T C14657T C14805T G26144T

EPI_ISL_448618
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADB7D/2020
 C241T C3037T C7081T G14371T C14408T A17236G A23403G G27238T G28077T

EPI_ISL_448619
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADB9B/2020
 C241T C3037T C14408T C22009T T22328C A23403G C27046T C27595T GGG28881AAC

EPI_ISL_448620
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADBB9/2020
 C241T C3037T C6543T C10818T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_448621
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADBD7/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29836T

EPI_ISL_448622
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADBF5/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448623
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADC10/2020
 C241T C3037T A11519G C14408T A23403G GGG28881AAC

EPI_ISL_448624
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADC3E/2020
 C241T C3037T C6968T C14408T A23403G GGG28881AAC

EPI_ISL_448625
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADC5C/2020
 C241T C3037T C14408T G22592T A23403G GGG28881AAC

EPI_ISL_448626
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADC7A/2020
 G7K G24K CA33MW C44S C48M T51K G72K C241T C3037T C14408T C16329T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_448627
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADC98/2020
 C241T C3037T C14408T A23403G GGG28881AAC A29893R

EPI_ISL_448629
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADCD4/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448630
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADCF2/2020
 C241T C3037T C14408T T18398C A23403G G24781T G28580A GGG28881AAC

EPI_ISL_448631
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADD1D/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448632
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADD3B/2020
 C241T C3037T C14408T A23403G AG28877TC GGG28881AAC

EPI_ISL_448633
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADD59/2020
 C241T C3037T C3373A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_448634
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADD77/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_448635
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADD95/2020
 C241T C2142T C3037T C14408T C19170T G19509A A23403G G25650T G26951T GGG28881AAC

EPI_ISL_448636
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADDB3/2020
 C241T C3037T C14408T G22592T A23403G GGG28881AAC

EPI_ISL_448637
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADDD1/2020
 A2480G C2558T G11083T C14805T C22313T G26144T

EPI_ISL_448638
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADDFF/2020
 C241T C3037T C14408T C17999T A23403G GGG28881AAC AA29871TC

EPI_ISL_448640
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADE38/2020
 C241T C3037T C6568T C14408T A23403G GGG28881AAC C29836T

EPI_ISL_448643
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADEB0/2020
 C241T C3037T C5724T C14408T A20796G A23403G G24038T G24262R GGG28881AAC AA29897WR

EPI_ISL_448644
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADEDE/2020
 C241T C3037T C14408T A20796G A23403G G24038T GGG28881AAC

EPI_ISL_448645
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADEFC/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448646
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADF17/2020
 C241T C3037T C14408T T18398C A23403G G24781T C27294T C27434T GGG28881AAC

EPI_ISL_448650
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADF71/2020
 C1346T A2817G G11083T G13627T C14805T C15540T C20178T G26144T C26882T A28338G A28455G

EPI_ISL_448651
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADF9F/2020
 C241T C3037T C14408T A23403G T25842C GGG28881AAC

EPI_ISL_448652
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADFBD/2020
 C241T C3037T C6310T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_448654
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-ADFF9/2020
 T11C C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448655
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE013/2020
 C241T C3037T G11335T C14408T T19839C A23403G C26058T C26681T GGG28881AAC

EPI_ISL_448656
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE022/2020
 C241T C3037T C10851T C14408T A23403G GGG28881AAC

EPI_ISL_448657
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE031/2020
 A1515G C9223T G11083T C14805T T17247C G26144T A26823C

EPI_ISL_448658
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE05F/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_448659
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE07D/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_448660
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE09B/2020
 C241T A1635C C3037T C14408T A23403G A23870G GGG28881AAC

EPI_ISL_448661
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE0B9/2020
 C241T C3037T C4999T C14408T C21575T G23236T A23403G C26058T GGG28881AAC

EPI_ISL_448662
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE0D7/2020
 C241T C3037T C14408T A23403G GGG28881AAC A29893R

EPI_ISL_448663
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE0F5/2020
 C241T C3037T C14408T G22592T A23403G C28253T GGG28881AAC

EPI_ISL_448664
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE110/2020
 C241T C3037T C14408T C19102T A23403G G24038T GGG28881AAC

EPI_ISL_448666
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE15C/2020
 C241T T834G C1059T C3037T C14408T T18126A A23403G G25563T

EPI_ISL_448667
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE17A/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_448668
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE189/2020
 C241T C3037T C14408T A20796G A23403G G24038T GGG28881AAC

EPI_ISL_448669
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE198/2020
 C241T ATG518- C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448670
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE1B6/2020
 C241T C3037T C14408T G22592T A23403G GGG28881AAC

EPI_ISL_448671
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE1D4/2020
 C241T C3037T C14408T G22592T A23403G GGG28881AAC A29891R A29895R A29900G

EPI_ISL_448672
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE1F2/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29836T

EPI_ISL_448673
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE21D/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_448674
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE22C/2020
 C19T C241T C3037T C12741T C14408T A23403G GGG28881AAC

EPI_ISL_448675
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE23B/2020
 C241T C3037T C14408T A21137G A23403G C28603T GGG28881AAC

EPI_ISL_448676
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE259/2020
 C241T C3037T C10818T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_448678
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE295/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448679
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE2B3/2020
 C6027T A10236G G11083T C14805T T17247C C24130T G26144T

EPI_ISL_448680
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE2D1/2020
 C241T C3037T T6769C C14408T A20796G A23403G G24038T GGG28881AAC G29050A

EPI_ISL_448681
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE2FF/2020
 C241T C3037T G8102T C14408T A23403G GGG28881AAC

EPI_ISL_448682
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE31A/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_448684
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE338/2020
 C241T C3037T C9165T C14408T A23403G G26709T GGG28881AAC

EPI_ISL_448685
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE374/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_448686
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE392/2020
 C241T C3037T C14408T C16376T A23403G G24781T GGG28881AAC

EPI_ISL_448687
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE3B0/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29836T

EPI_ISL_448688
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE3DE/2020
 C241T C3037T T7397C C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_448689
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE3FC/2020
 C19T C241T C3037T C12741T C14408T A23403G GGG28881AAC

EPI_ISL_448690
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE417/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448691
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE453/2020
 C241T C3037T A13683G C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_448692
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE471/2020
 C241T C1912T C3037T C6606T C14408T G14580T C18501T C19017T A20139G A23403G

EPI_ISL_448694
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE49F/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_448695
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE4AE/2020
 C241T C3037T C14408T A20796G A23403G G24038T GGG28881AAC AA29882RR AA29887RR AA29892RR AA29897RR

EPI_ISL_448696
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE4BD/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448697
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE4DB/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_448698
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE4F9/2020
 C241T C3037T C14408T A23403G C27509T GGG28881AAC

EPI_ISL_448699
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE514/2020
 C241T C3037T C14408T A20796G A23403G G24038T GGG28881AAC

EPI_ISL_448700
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE532/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448701
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE550/2020
 ATG1605- C2147T G9623T C9724T G11083T

EPI_ISL_448702
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE57E/2020
 C241T C3037T C14408T T18398C A23403G G24781T G28580A GGG28881AAC

EPI_ISL_448703
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE59C/2020
 C241T C3037T C14408T C17440T A23403G G25429T C26110T C26461T

EPI_ISL_448704
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE5BA/2020
 C241T C3037T C14408T A23403G GGG28881AAC A29893W

EPI_ISL_448705
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE5D8/2020
 G174A C241T C2416T C3037T C8352T C14408T C14786T G20578T A23403G G25563T

EPI_ISL_448706
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE5F6/2020
 C241T C3037T T11293C C13860T C14408T A23403G G25429T C26461T

EPI_ISL_448707
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE611/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448708
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE65D/2020
 C241T C3037T C6968T C14408T A23403G GGG28881AAC

EPI_ISL_448709
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE67B/2020
 A2480G C2558T C3737T G11083T C14805T G25354T G26144T A27259G C27679T

EPI_ISL_448710
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE699/2020
 C241T C1314T C3037T C14408T C15579T G22592T A23403G GGG28881AAC A29430G

EPI_ISL_448711
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE6D5/2020
 C241T C1059T C3037T T7302C C7764T C14408T G22141A A23403G G25563T C28932T C29067T

EPI_ISL_448712
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE6E4/2020
 C241T C3037T C11109T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_448713
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE6F3/2020
 C241T C3037T C13554T C14408T A23403G GGG28881AAC

EPI_ISL_448714
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE71E/2020
 C241T C3037T C14408T T19839C A23403G G25906T C26681T GGG28881AAC T29417C

EPI_ISL_448715
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE73C/2020
 C241T C1059T C3037T T7302C C7764T C14408T G22141A A23403G G25563T C28932T C29067T

EPI_ISL_448716
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE75A/2020
 C241T C3037T C14408T A23403G G24038T GGG28881AAC

EPI_ISL_448717
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE778/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_448718
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE796/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C27970T GGG28881AAC G29513T

EPI_ISL_448719
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE7B4/2020
 C241T C3037T C14408T A20796G A23403G G24038T GGG28881AAC

EPI_ISL_448720
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE7D2/2020
 C241T C583T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448722
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE7F0/2020
 C241T C3037T C10818T C14408T A23403G G24781T GGG28881AAC AA29899RR

EPI_ISL_448723
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE80C/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_448724
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE81B/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448725
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE839/2020
 C241T C593T C3037T C14408T C16260T T19839C A23403G C26681T GGG28881AAC G29528T A29900R

EPI_ISL_448726
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE848/2020
 C241T C3037T C14408T A23403G GGG28881AAC G28895T

EPI_ISL_448727
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE857/2020
 C241T C3037T C14408T G22592T A23403G T26130C GGG28881AAC

EPI_ISL_448728
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE875/2020
 C241T C3037T G11083T C14408T A23403G GGG28881AAC

EPI_ISL_448729
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE893/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448730
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE8B1/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29625T

EPI_ISL_448731
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE8DF/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448732
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE8EE/2020
 C241T C3037T C14408T A23403G G24038T GGG28881AAC

EPI_ISL_448733
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE909/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_448735
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE936/2020
 C241T C3037T C9891T C14408T T15051C C18322T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_448736
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE954/2020
 C241T C3037T C10818T C14408T A23403G G24781T GGG28881AAC A29892K

EPI_ISL_448738
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE972/2020
 A2480G C2558T C3737T G11083T C14805T C19269T G25354T G26144T C27679T A29899R

EPI_ISL_448740
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE990/2020
 C241T C3037T C3373A C11195T C14408T C15216T A23403G GGG28881AAC G29868K

EPI_ISL_448743
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE9CD/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448744
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE9DC/2020
 C241T C3037T C14408T A23403G G26951T GGG28881AAC

EPI_ISL_448745
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AE9FA/2020
 C241T C3037T C14408T T18398C A23403G G24781T G28580A GGG28881AAC

EPI_ISL_448746
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEA06/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_448747
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEA15/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29736T

EPI_ISL_448749
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEA33/2020
 C241T C1912T C3037T G5411T C6606T C14408T G14580T A20139G A23403G A24388T A29895K A29899R

EPI_ISL_448750
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEA51/2020
 C241T C3037T C14408T C16260T T19839C A23403G C26681T ATT27759- GGG28881AAC

EPI_ISL_448751
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEA8E/2020
 C241T C3037T C14408T A23403G T25842C GGG28881AAC

EPI_ISL_448752
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEA9D/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448754
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEAD9/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_448755
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEAF7/2020
 T1494C A2480G C2558T G11083T G12310A C14805T G26144T

EPI_ISL_448757
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEB12/2020
 C241T C3037T C14408T G21600T A23403G A23870G GGG28881AAC

EPI_ISL_448758
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEB21/2020
 C241T C3037T C14408T T18398C A23403G G24781T G28580A GGG28881AAC

EPI_ISL_448759
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEB30/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448760
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEB4F/2020
 C241T C3037T C6968T C14408T A23403G GGG28881AAC

EPI_ISL_448762
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEB7C/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448763
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEB9A/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_448765
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEBB8/2020
 C241T C3037T C6543T C10818T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_448766
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEBC7/2020
 C241T C3037T C9430T C14408T A23403G G24781T GGG28881AAC G29706T

EPI_ISL_448767
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEBD6/2020
 C241T C3037T C14408T A20796G A23403G G24038T GGG28881AAC

EPI_ISL_448768
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEBE5/2020
 C241T C3037T C14408T A20796G A23403G G24038T GGG28881AAC

EPI_ISL_448769
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEBF4/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_448771
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEC1F/2020
 C241T C3037T T6294C C9891T C14408T A20268G A23403G

EPI_ISL_448772
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/OXON-AEC3D/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC

EPI_ISL_448987
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6EAC/2020
 ATTA1- C241T C1943T C2704T C3037T C8123Y C14408T A15249G A23403G C25047T GGG28881AAC

EPI_ISL_448993
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E6F21/2020
 ATTAAAGGT1- C241T C2940T C3037T C14408T A23403G

EPI_ISL_449099
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8059/2020
 C241T C3037T C14408T A23403G G26062T GGG28881AAC

EPI_ISL_449106
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E80D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G441A C1878Y C3037T G12929T C14408T A23403G C25728T GGG28881AAC

EPI_ISL_449110
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E811A/2020
 C241T C3037T C13724Y C14408T T23392C A23403G GGG28881AAC

EPI_ISL_449115
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_449126
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8226/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G

EPI_ISL_449138
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E82EA/2020
 ATT1- C241T C2940T C3037T C14408T A15159R A23403G

EPI_ISL_449142
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E8332/2020
 ATTAAAGGTT1- C241T C2940T C3037T C14408T G18677T A20180T A23403G GGG28881RRS

EPI_ISL_449144
 2020-05-19 2020-05-19
 United Kingdom hCoV-19/England/NORW-E839C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G22992A A23403G C28054T GGG28881AAC

EPI_ISL_456702
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2673/2020
 C241T C3037T G8612T C14408T G20489T A23403G GGG28881AAC G29705T

EPI_ISL_456708
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2BA1/2020
 C241T C3037T C14408T A23403G C26447T G27281T T28393C GGG28881AAC

EPI_ISL_456709
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2BCF/2020
 C241T C3037T C14408T A23403G C26447T G27281T GGG28881AAC

EPI_ISL_456711
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2BED/2020
 C241T C3037T G8612T C14408T A23403G GGG28881AAC G29705T

EPI_ISL_456713
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2C08/2020
 C241T C3037T C14408T A23403G C26447T G27281T GGG28881AAC

EPI_ISL_456716
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2C71/2020
 C241T C3037T C14408T C19140T C19374T A23403G GGG28881AAC

EPI_ISL_456719
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2CDB/2020
 C241T C1059T C3037T C9286T C14408T A23403G G25552A G25563T G28899C

EPI_ISL_456723
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2D7E/2020
 C241T C1059T C1218T C3037T C9286T C14408T A23403G G25563T C26333T G28378T G28899C

EPI_ISL_456724
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2D8D/2020
 C241T C3037T C7267T C9165T C14408T A23403G G26062T C28868T GGG28881AAC

EPI_ISL_456727
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2E4E/2020
 C241T C583T C3037T C4002T G10097A C13536T C14184T C14408T C18175T G18960A C21058T A23403G C23731T GGG28881AAC

EPI_ISL_456732
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2EC6/2020
 C241T C3037T G8612T G11389T C14408T G22203T G22436T G23242T A23403G GGG28881AAC G29705T

EPI_ISL_456733
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2ED5/2020
 C241T C3037T T4149C CAG6501- A8031G C12525T C14408T A23403G G25599T GGG28881AAC C29353T

EPI_ISL_456739
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2F78/2020
 C241T C1102T C3037T C3587T C8727T C14408T G22021T A23403G GGG28881AAC

EPI_ISL_456984
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5181/2020
 C241T C3037T A5780G C14408T A20268G C21998T A23403G ACTTTG25432- A28390G

EPI_ISL_456985
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5184/2020
 C241T C3037T C6472T C7815T C14408T A20268G G22363T A23403G T26972C

EPI_ISL_456986
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5209/2020
 C241T C3037T C14408T A20268G A23403G C23638T C28854T

EPI_ISL_456997
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5276/2020
 C241T C3037T C6573T C12036T C14408T G21920T C22450T A23403G C25528T G27715T GGG28881AAC

EPI_ISL_456998
 2020-05-19 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5280/2020
 C241T C3037T C14408T C15324T G19542T G20679A A23403G T27576G

EPI_ISL_460973
 2020-05-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T C11109T C13458T C14408T A23403G G25563T C27367T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460975
 2020-05-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460976
 2020-05-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A23403G G25563T C26408T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460978
 2020-05-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C9803T C11109T C13458T C14408T A23403G G25563T C26408T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460979
 2020-05-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C26408T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460980
 2020-05-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T A3780G G5425T C8809T C11109T C12119T C14408T G14575T C15141T A23403G G25563T C26408T C29370T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460981
 2020-05-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T C11109T C13458T C14408T A23403G G25563T C26408T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460982
 2020-05-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T A8946G C11109T C14408T A23403G G25563T C26408T A27921T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460983
 2020-05-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T C11109T C13458T C14408T A23403G G25563T C26408T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460984
 2020-05-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A23403G G25563T C26408T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460985
 2020-05-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C26408T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461009
 2020-05-19 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G17641T T19209C A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461221
 2020-05-19 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A691G C2003T C2142T C3037T C5526T T11638C C14408T A17300G G22021T A23403G T27308C GGG28881AAC G29179T C29708T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461222
 2020-05-19 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T A9153G C14408T T18623C C20148T C21646T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461223
 2020-05-19 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordHolland_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6741A C14408T A23083G A23403G C25416T G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461900
 2020-05-19 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111618/2020
 C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789-

EPI_ISL_461901
 2020-05-19 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111627/2020
 G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_461902
 2020-05-19 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111636/2020
 G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_467939
 2020-05-19 2020-06-15
 United States hCoV-19/USA/VA-DCLS-0339/2020
 ATTA1- C241T G1042A C1059T C3037T C14408T C14925T A23403G C24381T G25563T TGAT27757- G28985T C29870A

EPI_ISL_467940
 2020-05-19 2020-06-15
 United States hCoV-19/USA/VA-DCLS-0340/2020
 ATTAAAG1- C241T G1042A C1059T C3037T C14408T C14925T A23403G C24381T G25563T TGAT27757- C29870A

EPI_ISL_467976
 2020-05-19 2020-06-16
 United States hCoV-19/USA/CA-SR0453/2020
 C241T C1059T G1274T C1929T C3037T C6651T C14408T C16762T G19999A A23403G G25563T

EPI_ISL_467981
 2020-05-19 2020-06-16
 United States hCoV-19/USA/CA-SR0459/2020
 C241T C1457T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_467984
 2020-05-19 2020-06-16
 United States hCoV-19/USA/CA-SR0463/2020
 C241T C3037T C14408T T20256C A20268G C20428T A23403G C28854T

EPI_ISL_469063
 2020-05-19 2020-06-17
 Sweden hCoV-19/Sweden/20-14827/2020
 C241T C3037T A8962G C14408T A17674G C18032T A23403G C25585T T26957C GGG28881AAC

EPI_ISL_469067
 2020-05-19 2020-06-17
 Sweden hCoV-19/Sweden/20-51598/2020
 C241T C1059T C3037T C3874T G8653T C14408T G20623T G21770T A23403G G24368T G25563T G27877T C28948T

EPI_ISL_469312
 2020-05-19 2020-06-18
 United Kingdom hCoV-19/England/NORT-29879D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C11514Y C14408T G21220T G23126K A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_469419
 2020-05-19 2020-06-18
 United Kingdom hCoV-19/England/BRIS-12B9A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471820
 2020-05-19 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20799/2020
 C241T C1059T C3037T G4904T C6402T C6541Y C14408T T18237C A23403G G25563T

EPI_ISL_471821
 2020-05-19 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20800/2020
 C241T C3037T G4510T C14408T T22690C A23403G C25665Y G28325T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_471822
 2020-05-19 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20801/2020
 C241T C3037T C14408T T22690C A23403G C25665Y T27158Y G28325T

EPI_ISL_471823
 2020-05-19 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20802/2020
 C241T C3037T G4510T C14408T T22690C A23403G C25665Y G28325T

EPI_ISL_471898
 2020-05-19 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20877/2020
 C241T C1059T C3037T G4904T G6169R C6402T A9259R C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_473026
 2020-05-19 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160BC0/2020
 AT1- C241T A1132G C2232T C3037T C4633T C5031T C14408T C14877T C16915T C19185T C21781T A23403G C24034T T28382C GGG28881AAC

EPI_ISL_473376
 2020-05-19 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FB2F/2020
 C241T C3037T G7452T G9480T G10097A C14408T T16456C C22594T A23403G C23731T C27538A G28580T AG28877TC GGG28881AAC

EPI_ISL_473379
 2020-05-19 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FB5C/2020
 C241T C3037T T6964C C14408T C14786T A23403G GGG28881AAC

EPI_ISL_473721
 2020-05-19 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A385G C3037T G3689A T11660A C14408T A23403G G25429T A28841G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473725
 2020-05-19 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C5184T C12710T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473915
 2020-05-19 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6211/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473916
 2020-05-19 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6212/2020
 G204A C241T C3037T G6461T C14408T A20268G A20336G A23403G G27987T C28854T

EPI_ISL_473917
 2020-05-19 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6213/2020
 C241T C1059T C3037T T7814C C14408T G18213T A18818G A23403G G25563T C27476T

EPI_ISL_473918
 2020-05-19 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6214/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473919
 2020-05-19 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6215/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473920
 2020-05-19 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6222/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473921
 2020-05-19 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6223/2020
 C241T C3037T C10798A C13862T C14408T C14503T A23403G C27532T C28836T

EPI_ISL_473922
 2020-05-19 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6224/2020
 C241T C3037T C10798A C13862T C14408T C14503T A23403G C27208T C27532T C28836T

EPI_ISL_475521
 2020-05-19 2020-06-23
 Sweden hCoV-19/Sweden/20-14828/2020
 C241T C3037T A8962G C14408T T16242A A17674G C18032T A23403G C25585T T26957C GGG28881AAC

EPI_ISL_475937
 2020-05-19 2020-06-25
 Singapore hCoV-19/Singapore/320/2020
 C6310A C6312A G11083T C11173A C13730T C19524T C23185T C23929T C28290T C28311T AAAAAAAAAAAA29892-

EPI_ISL_476135
 2020-05-19 2020-06-25
 Sweden hCoV-19/Sweden/20-51578/2020
 C241T C3037T C12559T C14408T G18907T A23403G GGG28881AAC

EPI_ISL_476571
 2020-05-19 2020-06-25
 Argentina hCoV-19/Argentina/Heritas_HG018/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T C28863T G29540A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_477298
 2020-05-19 2020-06-29
 United States hCoV-19/USA/MN-MDH-1209/2020
 AT1- C241T T833C C1059T C1150T C3037T C14408T A23403G G25563T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_478126
 2020-05-19 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A363G C2146T C3037T C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478129
 2020-05-19 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A G12163A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478140
 2020-05-19 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T G21746C A23403G G27459T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478141
 2020-05-19 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174A C241T C2638T C3037T C9907T C11109T C14220T G14364- C14408T C19170T G19509A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478148
 2020-05-19 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T C23188T A23403G C23855T G27626C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478149
 2020-05-19 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T G14023A C14408T C15237T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478150
 2020-05-19 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GTTCTA28090- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478151
 2020-05-19 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T G21746C A23403G G27459T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478196
 2020-05-19 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB5274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C7011T C12362T C14408T G19398T C22624- A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479536
 2020-05-19 2020-06-30
 India hCoV-19/India/NIV-36444/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C7600T C14408T A23403G GGG28881AAC A29815T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_481110
 2020-05-19 2020-07-02
 India hCoV-19/India/ILSCV25367/2020
 C241T C3037T C8917T G9389A T10933C C14408T T15537C A23403G G24678C T27835C GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_481111
 2020-05-19 2020-07-02
 India hCoV-19/India/ILSCV25378/2020
 G4285T C8782T G22468T T25674G T28144C G28878A G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481112
 2020-05-19 2020-07-02
 India hCoV-19/India/ILSCV25518/2020
 C241T C313T G1946T C3037T C5700A C14408T A23403G G24197A G25681A GGG28881AAC

EPI_ISL_481113
 2020-05-19 2020-07-02
 India hCoV-19/India/ILSCV25524/2020
 C241T C313T C3037T C5700A A10375G C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_481114
 2020-05-19 2020-07-02
 India hCoV-19/India/ILSCV25591/2020
 C241T T1094C G1820A C3037T C8917T C14408T C18129T A23403G GGG28881AAC C29138A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_481115
 2020-05-19 2020-07-02
 India hCoV-19/India/ILSCV25594/2020
 C241T T1094C G1820A C3037T C8917T C14408T C18129T A23403G A26441C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_482555
 2020-05-19 2020-07-04
 India hCoV-19/India/NCDC2283_CSIR-IGIB/2020
 C241T T1947Y C3037T T4941Y C13730Y C14408Y C18877T C22444T A23403G AG24389MS G25563K C26735T A26748W A28676M C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482563
 2020-05-19 2020-07-04
 India hCoV-19/India/NCDC3652_CSIR-IGIB/2020
 C241T T1947Y C3037T C5020T C6445T C14408T G18181A C18877T C19484Y C22444T C22971A A23403G G23876A G25595K C26735T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482957
 2020-05-19 2020-07-06
 United States hCoV-19/USA/MN-MDH-1236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1812T G2664T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482958
 2020-05-19 2020-07-06
 United States hCoV-19/USA/MN-MDH-1237/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_482959
 2020-05-19 2020-07-06
 United States hCoV-19/USA/MN-MDH-1238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27688T C27964T C28531T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483606
 2020-05-19 2020-07-08
 Singapore hCoV-19/Singapore/583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C6310A C6312A A9175G G11083T C13730T C19524T C23185T C23929T C28311T T29710A AAAAAAAAAAAA29892-

EPI_ISL_483616
 2020-05-19 2020-07-08
 Singapore hCoV-19/Singapore/593/2020
 ATTAAAGG1- C6310A C6312A G11083T C13730T C19524T C23929T CA28253TC C28311T AAAAAAAAAAAA29892-

EPI_ISL_484265
 2020-05-19 2020-07-08
 United Kingdom hCoV-19/England/NORT-2961EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C2644T C3037T C7732T C14408T A23403G G23948T G25687T C26313T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487526
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C A23403G G25555K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487530
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7165T C14408T T22308C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487536
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487539
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487554
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C12546Y C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487586
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487601
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487613
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B6FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488837
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A11C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25660T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488842
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A10D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3760C G10097A C14408T C14649T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488851
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A0B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7020G C7420T C14408T A23403G G25563T T25577G C25904T A26358G G26842A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488852
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A0D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7020G C7420T C14408T A23403G G25563T T25577G C25904T A26358G G26842A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489073
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-292DCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C2306T C3037T A14061G C14408T G16705R C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489102
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-292D37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8042A G10097A G10642T C14408T C16616T A23403G C23731T C25714T G28580T GGG28881AAC G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489137
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/England/NORT-292D46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C8809T G9141R G10097A C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489156
 2020-05-19 2020-07-14
 United Kingdom hCoV-19/Northern Ireland/NIRE-FEEDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C16323T A23403G GGG28881AAC G29745C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490377
 2020-05-19 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A212B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1820A C3037T T4330C G6352T C10332T C14408T C16716T C18928T A23403G GGG28881AAC C29870A

EPI_ISL_491985
 2020-05-19 2020-07-18
 Oman hCoV-19/Oman/205037001/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C6312A G11083T C13730T C23929T C28311T AGGAGA29860GTCTCCATTT G29868A AA29872GC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875GCG

EPI_ISL_491986
 2020-05-19 2020-07-18
 Oman hCoV-19/Oman/205037397/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C6312A G11083T C13730T C23929T C28311T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_492453
 2020-05-19 2020-07-20
 United Kingdom hCoV-19/England/NORT-29A8E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T C22858T A23403G C23731T C25513T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492456
 2020-05-19 2020-07-20
 United Kingdom hCoV-19/England/NORT-29A8B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492464
 2020-05-19 2020-07-20
 United Kingdom hCoV-19/England/NORT-29A8A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492474
 2020-05-19 2020-07-20
 United Kingdom hCoV-19/England/NORT-29A8D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493615
 2020-05-19 2020-07-21
 United Kingdom hCoV-19/England/PORT-2CFA0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3904G G14310T C14408T T18398C A23403G G24781T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493945
 2020-05-19 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A23403G A24862G G27147C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494270
 2020-05-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1686A9/2020
 ATTAAAGGTTT1- C241T C3037T C14408T A23403G T27907K GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_494672
 2020-05-19 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C466T C3037T C14408T A20268G C22482T A23403G C28854T

EPI_ISL_494687
 2020-05-19 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2395T C3037T C14408T A20268G G21786T A23403G C28854T

EPI_ISL_494693
 2020-05-19 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5668A C5884T C14408T T18083C A20268G A23403G C28854T

EPI_ISL_494706
 2020-05-19 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C346T C1059T C2470T C3037T C3130T C14408T C20759T T22939C A23403G G25563T

EPI_ISL_494708
 2020-05-19 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1593T C3037T C10319T C14408T A23403G G25563T C27964T C29375T

EPI_ISL_495411
 2020-05-19 2020-07-22
 Turkey hCoV-19/Turkey/KU-001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C2509T C3037T C13620T C14408T C14724T A23403G G24262T G27703T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_495827 MT821747
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1377/2020
 ATTAAAGGTTTATAC1- C3311A C10188T C18060T C24378T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495828 MT821715
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1378/2020
 AT1- C3311A C8782T G17671T C17747T A17858G C18060T A18579C C24378T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495829 MT821732
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1379/2020
 AT1- C3311A C8782T G17671T C17747T A17858G C18060T A18579C C24378T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495830 MT821710
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1380/2020
 ATTAAAGGTTT1- C241T C3037T C6445T C14408T T16257C G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495831 MT821684
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1381/2020
 ATTAAAGGTTTA1- C241T T1837C C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495833 MT821635
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1383/2020
 ATT1- C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC G29254T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495834 MT821745
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1384/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495835 MT821639
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1385/2020
 AT1- C3311A C8782T C10188T G17671T C17747T A17858G C18060T A18579C C24378T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495838
 2020-05-19 2020-07-23
 United States hCoV-19/USA/WA-S1388/2020
 ATTAAAGGTTTAT1- G1401A C8782T C17747T A17858G C18060T A19308G A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495839 MT821607
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1389/2020
 ATTAAAGGTTTATA1- C241T C3037T C6285T C6445T C9430T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495840 MT821591
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1390/2020
 AT1- C241T C3037T C5812T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495841 MT821699
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1391/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C3411T C14408T A20724T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495842 MT821731
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1392/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T A20724T A23403G G25563T G29553A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_495843 MT821753
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1393/2020
 ATTAAAGGTTT1- G1401A C8782T C17747T A17858G C18060T A19308G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495844 MT821691
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1394/2020
 ATTAAAGGTTTAT1- G354A C2070T C8782T T11104C C17747T A17858G C18060T C24969T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495845 MT821572
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1395/2020
 AT1- C241T C1059T C3037T G4399T C14408T A15426G C18029T C19029T A23403G G25563T A26014G T29410C G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_495847 MT821673
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1397/2020
 AT1- C241T C3037T C6445T C14408T G16813A A23403G G25769T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495849 MT821681
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495852 MT821647
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1402/2020
 ATTAAAGGTTTATACCTT1- C241T T1837C C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495853 MT821578
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1403/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T C15933T G16377T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495854 MT821532
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1404/2020
 A1- C241T C3037T C5407T C13860T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_495855 MT821665
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1405/2020
 A1- C241T C1059T C2508T C3037T C14408T C18348T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_495856 MT821628
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1406/2020
 A1- C241T C3037T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_495857 MT821568
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1407/2020
 ATTAAAGGTTTATA1- C241T C3037T T6023C C14408T G16813A C19041T A21312G A23403G C28312T GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_495858 MT821548
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1408/2020
 ATT1- C241T C1060T C3037T C14408T T19839C A21845G A23403G C25614T A28100G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495859 MT821604
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1409/2020
 ATTAAAGGTTTATAC1- C241T C3037T A4197G C14408T G16813A A23403G T25783C C26366T GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_495860 MT821610
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1410/2020
 ATTAAAGG1- C241T C3037T G3328T C6445T C14408T G16813A C23114T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495861 MT821545
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1411/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_495862 MT821609
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1412/2020
 ATTAAAGGTTT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495864 MT821541
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1414/2020
 C241T C3037T C14408T C15933T G16377T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_495865 MT821661
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1415/2020
 ATTAAAGGTTTAT1- C241T C3037T C6573T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495866 MT821623
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1416/2020
 ATT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495867 MT821769
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1417/2020
 ATT1- C241T C1060T C3037T C14408T T19839C A21845G A23403G C25614T A28100G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_495868 MT821771
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1418/2020
 A1- C241T A2127G C3037T C3397T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_495869 MT821557
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1419/2020
 AT1- C241T C3037T C6573T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_495872 MT821722
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1422/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T C22506T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495873 MT821734
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1423/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495874 MT821749
 2020-05-19 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1424/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496537
 2020-05-19 2020-07-24
 India hCoV-19/India/AFMC_4954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1185T C3037T C3634T C14408T C15324T A23403G GAC29868A

EPI_ISL_496566
 2020-05-19 2020-07-24
 India hCoV-19/India/NCCS_NR1885/2020
 ATTAAA1- T13C CC15AA C241T T3011C C3037T C3634T C14408T C15324T A23403G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_497887
 2020-05-19 2020-07-25
 India hCoV-19/India/AFMC_4958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C5700A C11235- C14408T A23403G G26065- GGG28881AAC G29868-

EPI_ISL_499998
 2020-05-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A256B/2020
 ATTAAAGGTTT1- C241T C906T C3037T T11457C C14408T A17236G A23403G A24385G C25350T G29759T C29870A

EPI_ISL_499999
 2020-05-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A25D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G A26927G GGG28881AAC C29870A

EPI_ISL_500008
 2020-05-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A27FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C26606T C28290T

EPI_ISL_500009
 2020-05-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A2853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G8117K C12085Y C14408T A23403G A26927G GGG28881AAC C29870A

EPI_ISL_500019
 2020-05-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A3C74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A C14408T C22295M A23403G C23731T G28580T GGG28881AAC C28905T C29421T G29751K C29870A

EPI_ISL_500021
 2020-05-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A3CA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C12885T C14408T G21004T T21465C A23403G GGG28881AAC C29870A

EPI_ISL_500022
 2020-05-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A3CDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC G29227A C29870A

EPI_ISL_500023
 2020-05-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A3D35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A8512G C14408T A23403G C26606T C28290T C29870A

EPI_ISL_500024
 2020-05-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A3D44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4510T C4893T C14408T A23403G GGG28881AAC

EPI_ISL_500027
 2020-05-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A3DAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1613T C3037T T7135A C14408T G18538T G18781K A23403G G24257T GGG28881AAC C29870A

EPI_ISL_500028
 2020-05-19 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A3E32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_500958
 2020-05-19 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106B26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C17004T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500959
 2020-05-19 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106AB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T C14362T C14408T G21796T A23403G GGG28881AAC C29514T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500981
 2020-05-19 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106CC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T -11075TTT G11083K G11743A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501001
 2020-05-19 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106BCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501003
 2020-05-19 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106B08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G713T C3037T C14408T C16173T A23403G T24071C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501004
 2020-05-19 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106B17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501024
 2020-05-19 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106B44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501035
 2020-05-19 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106BBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9443T G11083T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501038
 2020-05-19 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106AED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501061
 2020-05-19 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106B35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T A14121G C14408T A23403G T27402C GGG28881AAC C29085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501064
 2020-05-19 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106CF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9443T G11083T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501065
 2020-05-19 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106D02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21057T A23403G A23902T T24565A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501068
 2020-05-19 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106CD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501161
 2020-05-19 2020-07-30
 United States hCoV-19/USA/WA-UW-9551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- AAC34TTT C241T C1059T A1255G C3037T TA14222GC C14408T G16912T A23403G G25563T G29553A C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_507047
 2020-05-19 2020-08-03
 United Kingdom hCoV-19/England/LOND-124CF8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2164A C3037T G7160A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507104
 2020-05-19 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D4E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G2891A G6463T C6781T C16466T A24178G C26681T A27669G C28453T C29364T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_507277
 2020-05-19 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII16106S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A3523C T11212C C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_508300
 2020-05-19 2020-08-04
 India hCoV-19/India/IB22/2020
 ATTA1- C241T C3037T C8917T G9389A C14408T A23403G GGG28881AAC G29868A

EPI_ISL_508309
 2020-05-19 2020-08-04
 India hCoV-19/India/IB30/2020
 ATTAAAGGTTTATACC1- C241T C3037T C8917T G9389A C14408T A23403G GGG28881AAC G29868A

EPI_ISL_508398
 2020-05-19 2020-08-04
 India hCoV-19/India/IK75/2020
 C241T C3037T A3917G C14408T A21620G C21707T A23403G G29868A

EPI_ISL_508399
 2020-05-19 2020-08-04
 India hCoV-19/India/IK77/2020
 ATTAAAGG1- T11A C241T C3037T A3917G C14408T A21620G C21707T A23403G G29868A

EPI_ISL_508405
 2020-05-19 2020-08-04
 India hCoV-19/India/IK86/2020
 AT1- C241T T1692C T2335C C3037T C7604T C14408T C21707T G21724T A23403G G29868A

EPI_ISL_508406
 2020-05-19 2020-08-04
 India hCoV-19/India/IK88/2020
 C241T C3037T C14408T A23403G G29868A

EPI_ISL_509688 MT844044
 2020-05-19 2020-08-05
 United States SARS-CoV-2/human/USA/AL-CDC-0731/2020
 C241T C1059T G2286A C3037T A4197G C14408T A23403G G25563T A28715T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509816 MT846500
 2020-05-19 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T T19839C A23403G C23707T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509951 MT846638
 2020-05-19 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2501G C3037T G7736A C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509952 MT846639
 2020-05-19 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509953 MT846640
 2020-05-19 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- T809A C1059T C3037T C14408T C15450T C16017T C16616T C17288T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509963 MT846651
 2020-05-19 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7131T C12025T C14408T T19839C C19961T A23403G C23707T T24631C GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510617
 2020-05-19 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_510618
 2020-05-19 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2281/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAA29891-

EPI_ISL_510619
 2020-05-19 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2282/2020
 ATTAAAGG1- C241T C1059T C2536T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_510624
 2020-05-19 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2287/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G C23997T G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_510625
 2020-05-19 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C241T C1059T C3037T C10078T C11916T C14408T C16650T T18408C A20675T A23403G G25563T G29179T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510638
 2020-05-19 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510839
 2020-05-19 2020-08-07
 Sweden hCoV-19/Sweden/20-51736/2020
 C241T G903T C1059T C3037T C14408T A14827G C21767G G23012A A23403G G24368T G25563T G29468T

EPI_ISL_510840
 2020-05-19 2020-08-07
 Sweden hCoV-19/Sweden/20-51737/2020
 C241T C1059T C3037T G9479T C14408T A23403G G24368T G25563T C26681T

EPI_ISL_511906
 2020-05-19 2020-08-10
 India hCoV-19/India/IK89/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C593T G2284A C3037T C14408T G15451A CT16575TC G19480T C20740A G22343A A23403G G25049T G29868A

EPI_ISL_512161
 2020-05-19 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1457T C3037T C7119T C14408T A20268G A23403G T24076C C28054T C28854T

EPI_ISL_512197
 2020-05-19 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1826/2020
 ATTAAAGGTTTATACCT1- C241T C3037T G13812T C14408T G20005A A20268G A23403G C28854T

EPI_ISL_512199
 2020-05-19 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C6406T C9967T C10741T C14408T G15243T C17104T G19690T A23403G G25563T C27964T

EPI_ISL_512200
 2020-05-19 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G13812T C14408T G20005A A20268G A23403G C28854T

EPI_ISL_512207
 2020-05-19 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_512208
 2020-05-19 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1854/2020
 ATTAAAG1- C241T C3037T C4582T C4993T C14408T A20268G A23403G A25590T C28695T C29733T

EPI_ISL_512211
 2020-05-19 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G13812T C14408T G20005A A20268G A23403G C28854T

EPI_ISL_512298
 2020-05-19 2020-08-11
 Poland hCoV-19/Poland/1140683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T A2869G C3037T G6446T C14408T C21707T A23403G G26918T G27490A C27735T GGG28881AAC C29095T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_513823
 2020-05-19 2020-08-13
 United States hCoV-19/USA/CA-CZB-2394/2020
 ATTA1- T11Y C241T C3037T C3411Y T4711C C4897T A6709G T10076C C14408T C18570T A18945G A23403G GGG28881AAC C29025T ACCGAGGCCACGCGGAGTACGATCGAGTGTACAGT29731- AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_513869
 2020-05-19 2020-08-13
 United States hCoV-19/USA/CA-CZB-2464/2020
 AT1- C241T C1059T C1420T C3037T C7765T C9166T C14408T A20755C A23403G G25563T G26199T G27754T

EPI_ISL_513870
 2020-05-19 2020-08-13
 United States hCoV-19/USA/CA-CZB-2465/2020
 C241T C1059T C1420T C3037T C7765T C14408T A20755C A23403G G25563T G26199T G27754T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_513873 MW036082
 2020-05-19 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2468/2020
 ATTAAAGGTTTA1- C241T C635Y C3037T C12374T C14408T C18113Y A23403G C24863T C27673Y C28253T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_513893 MW036072
 2020-05-19 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2508/2020
 AT1- C241T C3037T C9430T C14408T G19969A A20268G A23403G C25624A C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513895 MW036034
 2020-05-19 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2520/2020
 ATT1- C241T C313Y C3037T C4113Y C9430T C14408T G19969A A20268G A23403G C25624A C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513907 MW036050
 2020-05-19 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2539/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C18998T C19145T A23403G T23815Y C25521Y G25563T G27877S G29540A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515437
 2020-05-19 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0180/2020
 ATTAAA1- C241T C3037T G11744A C14408T A23403G

EPI_ISL_515438
 2020-05-19 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0181/2020
 ATT1- C241T C379A C1059T C3037T G9652T C11102T CC14407TT A23403G G25563T

EPI_ISL_515439
 2020-05-19 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0182/2020
 ATTAAA1- C241T C379A C1059T C1687T C3037T C14408T C14786T G18079A A23403G G25563T A29428C G29440T

EPI_ISL_515440
 2020-05-19 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0183/2020
 ATTAAA1- C241T C1059T C1347T C3037T T5143G G6566T G11744A C14408T C22212T A23403G G25563T T29765A

EPI_ISL_515917
 2020-05-19 2020-08-20
 United States hCoV-19/USA/CA-CDPH025/2020
 ATTAAAG1- C241T C379A C1059T T1417C C3037T G7675K C14408T G22017T A23403G G25563T G29477T C29769T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_520691
 2020-05-19 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290235819/2020
 C241T C3037T C12115T C14408T A23403G GGG28881AAC

EPI_ISL_520692
 2020-05-19 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290238519/2020
 G216T C3099A C8782T C26022T T28144C G28878A G29140C G29742A

EPI_ISL_520693
 2020-05-19 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290248480/2020
 C241T A1981C C3037T G5924A C6336T C14408T C21516T T21775G A23403G T27242C C28657T GGG28881AAC

EPI_ISL_520694
 2020-05-19 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290248500/2020
 C241T C3037T C14408T C18029T C20719T A23403G T26298C GGG28881AAC G28899C C29762T

EPI_ISL_522445
 2020-05-19 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2662/2020
 A1- C241T C337T C888T C3037T C14408T C18877T C19718T C22376T A23403G G25563T C26735T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_523161
 2020-05-19 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523202
 2020-05-19 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3122T C5259T C14408T C19170T G19509A A23403G C26313T GGG28881AAC C29420T G29628T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523374
 2020-05-19 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T TT7275GG C14408T A23403G A24862G A27674T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_523650
 2020-05-19 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524011
 2020-05-19 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-16011V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C874T A2576G C3037T G8102T C14408T A18233G A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524074
 2020-05-19 2020-08-27
 United States hCoV-19/USA/UT-08268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A716G C2094T C2416T C3037T C14408T A15596G C15720T A23403G G25563T C25792T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524080
 2020-05-19 2020-08-27
 United States hCoV-19/USA/UT-08279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1123G T1309C C3037T G4399T T9172C A10948G C12784T C14408T C14529A T19668G A23403G G26730T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524148
 2020-05-19 2020-08-27
 United States hCoV-19/USA/UT-08365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C6629T C11379T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524225
 2020-05-19 2020-08-27
 United States hCoV-19/USA/UT-08453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C8389T G9705T G11521A T12979C C14408T A23403G G25563T C27964T G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524227
 2020-05-19 2020-08-27
 United States hCoV-19/USA/UT-08455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T G28899A G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524253
 2020-05-19 2020-08-27
 United States hCoV-19/USA/UT-08484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C8389T G9705T G11521A T12979C C14408T A23403G G25563T C27964T G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524255
 2020-05-19 2020-08-27
 United States hCoV-19/USA/UT-08486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2939T C3037T T11698C G12395A C14408T G16935T G19567A A23403G T25780A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524305
 2020-05-19 2020-08-27
 United States hCoV-19/USA/UT-08544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4946C C14408T C15352T A20268G A21917G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524346
 2020-05-19 2020-08-27
 United States hCoV-19/USA/UT-08599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T A1236G C1514T C3037T C6541T C11379T C14408T A22320G A23403G G25444T G25563T C27964T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524367
 2020-05-19 2020-08-28
 United States hCoV-19/USA/UT-08629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T G28899A C29095T G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524368
 2020-05-19 2020-08-28
 United States hCoV-19/USA/UT-08630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6512C C14408T C18401T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524372
 2020-05-19 2020-08-28
 United States hCoV-19/USA/UT-08634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A C19145T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524773
 2020-05-19 2020-08-28
 United States hCoV-19/USA/UT-08716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C4002T G10097A C13536T C14408T G23126T A23403G A23723G C23731T C27972T GGG28881AAC C29362T C29546A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526568 MT956699
 2020-05-19 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1082/2020
 ATT1- C241T C398T C1059T C3037T C10188T C14408T T19931G A20431G T22220C A23403G T24982C G25290T G25563T G26209T C27964T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527702
 2020-05-19 2020-09-04
 United States hCoV-19/USA/MN-CDC-6326/2020
 C241T C1059T C3037T C3373T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527705
 2020-05-19 2020-09-04
 United States hCoV-19/USA/MN-CDC-6338/2020
 C241T C3037T T8856C A13416G C14408T C16830T T20246C A23403G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527706
 2020-05-19 2020-09-04
 United States hCoV-19/USA/MN-CDC-6348/2020
 C241T C1059T C3037T C3373T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527707
 2020-05-19 2020-09-04
 United States hCoV-19/USA/MN-CDC-6354/2020
 C241T C1059T C3037T C3373T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_529031
 2020-05-19 2020-09-09
 Egypt hCoV-19/Egypt/C-CU001a-S1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T A10864G A11991G C14408T C17123T C18877T A23403G G25563T C28697T A29408G CTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29831-

EPI_ISL_529675
 2020-05-19 2020-09-10
 United Kingdom hCoV-19/England/SHEF-C1092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529676
 2020-05-19 2020-09-10
 United Kingdom hCoV-19/England/SHEF-C13B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10870T C14408T C15315T G20931A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529677
 2020-05-19 2020-09-10
 United Kingdom hCoV-19/England/SHEF-C1609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2869G C3037T C14408T C16948T A23403G T27672C GGG28881AAC C29095T C29274T T29817C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529678
 2020-05-19 2020-09-10
 United Kingdom hCoV-19/England/SHEF-C4CB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20931A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529679
 2020-05-19 2020-09-10
 United Kingdom hCoV-19/England/SHEF-C665F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18803T C20719T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529680
 2020-05-19 2020-09-10
 United Kingdom hCoV-19/England/SHEF-C666E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T14466C G21593A A23403G C27999T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529682
 2020-05-19 2020-09-10
 United Kingdom hCoV-19/England/SHEF-C6F45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C11919T C14408T A23403G C25919T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529683
 2020-05-19 2020-09-10
 United Kingdom hCoV-19/England/SHEF-CE1A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530101
 2020-05-19 2020-09-10
 Spain hCoV-19/Spain/MD-R51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G626T C3037T T13529C C14408T C15960T A20268G A23403G T25830G C27679T C27982T G28541T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530125 MT994393
 2020-05-19 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2768/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C21658T A23312G A23403G G25563T C28253T G29553A A29700G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_530185 MT997707
 2020-05-19 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C1812T C3037T C10319T C13665T C14408T A23403G G25563T C27964T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_530187 MT997709
 2020-05-19 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T9070C C12132T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_542913
 2020-05-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-1945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11653T C14408T T14565A C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545055
 2020-05-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-1990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5806T C14408T C20474T A23403G A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545058
 2020-05-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-1996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6896T C10319T C14408T C16308T C16694T A23403G G25563T A25986T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545068
 2020-05-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-2013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C13115T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545150
 2020-05-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-2158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2964T C3037T C14408T C23191T A23403G G25563T A28704G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545273
 2020-05-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-2379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4683T C10319T C11345T C14408T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559442
 2020-05-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49DFCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7778W C8950T G10097A C14408T C22323Y A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559492
 2020-05-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49E07C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7173T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559558
 2020-05-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49DEBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14408T G15438T A20268G A23403G C24026T C24378T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559978
 2020-05-19 2020-09-28
 United Kingdom hCoV-19/Scotland/EDB6892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6461T C14408T C17550T A20268G A23403G G27987T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568984
 2020-05-19 2020-10-02
 France hCoV-19/France/IHU-0833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C14408T A23403G C24378T G25563T G25767T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

LR877382
 2020-05-19 2020-08-17
 Poland covid_hub_pl_ibch_0011
 

LR877383
 2020-05-19 2020-08-17
 Poland covid_hub_pl_ibch_0005
 

LR877384
 2020-05-19 2020-08-17
 Poland covid_hub_pl_ibch_0015
 

LR877385
 2020-05-19 2020-08-17
 Poland covid_hub_pl_ibch_0012
 

LR877386
 2020-05-19 2020-08-17
 Poland covid_hub_pl_ibch_0002
 

LR877387
 2020-05-19 2020-08-17
 Poland covid_hub_pl_ibch_0003
 

LR877390
 2020-05-19 2020-08-17
 Poland covid_hub_pl_ibch_0008
 

LR877392
 2020-05-19 2020-08-17
 Poland covid_hub_pl_ibch_0010
 

LR877396
 2020-05-19 2020-08-17
 Poland covid_hub_pl_ibch_0009
 

MT810087
 2020-05-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0453-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T G1274T C1929T C3037T C6651T C14408T C16762T G19999A A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810088
 2020-05-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0459-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1457T C3037T C14408T A20268G A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810089
 2020-05-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-0463-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T T20256C A20268G C20428T A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810873
 2020-05-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1584-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C466T C3037T C14408T A20268G C22482T A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810888
 2020-05-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1614-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2395T C3037T C14408T A20268G G21786T A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810894
 2020-05-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1622-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G5668A C5884T C14408T T18083C A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810907
 2020-05-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1638-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C346T C1059T C2470T C3037T C3130T C14408T C20759T T22939C A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810909
 2020-05-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1641-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1593T C3037T C10319T C14408T A23403G G25563T C27964T C29375T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT967952
 2020-05-19 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6326/2020
 C241T C1059T C3037T C3373T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT967955
 2020-05-19 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6338/2020
 C241T C3037T T8856C A13416G C14408T C16830T T20246C A23403G AAAAAAAAAAAAAAAAAAAAA29883-

MT967956
 2020-05-19 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6348/2020
 C241T C1059T C3037T C3373T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT967957
 2020-05-19 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6354/2020
 C241T C1059T C3037T C3373T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MT990449
 2020-05-19 2020-09-09
 Egypt SARS-CoV-2/human/EGY/CU001a_S1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C3037T A10864G A11991G C14408T C17123T C18877T A23403G G25563T C28697T A29408G CTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29831-

EPI_ISL_456717
 2020-05-20 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2CBD/2020
 C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_456729
 2020-05-20 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2E8A/2020
 C241T C1912T C3037T C4002T G9479T G10097A C13536T C14408T A23403G C23731T T24063C A25948G GGG28881AAC

EPI_ISL_456730
 2020-05-20 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2E99/2020
 C241T C1059T C1218T C3037T C9286T C14408T A23403G G25563T G28378T G28899C

EPI_ISL_456736
 2020-05-20 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2F1E/2020
 C241T C313T G599A T2153A C3037T C14408T A23403G G26589C A27083G C27128T GGG28881AAC

EPI_ISL_456987
 2020-05-20 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5214/2020
 C241T C3037T C14408T G19677T A20268G A23403G C28854T

EPI_ISL_456988
 2020-05-20 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5218/2020
 C241T C3037T C6472T C7815T C14408T A20268G G22363T A23403G T26972C

EPI_ISL_456989
 2020-05-20 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5220/2020
 C241T C3037T C6472T C7815T C14408T A20268G G22363T A23403G T26972C

EPI_ISL_456992
 2020-05-20 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5245/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G

EPI_ISL_460839
 2020-05-20 2020-06-06
 Netherlands hCoV-19/Netherlands/Flevoland_16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G G25500T C26408T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460986
 2020-05-20 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C21811T A23403G G25563T C26408T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460987
 2020-05-20 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G C26408T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461244
 2020-05-20 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G G25500T C26408T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461245
 2020-05-20 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G C26408T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461905
 2020-05-20 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111681/2020
 G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_461906
 2020-05-20 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111690/2020
 G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_461907
 2020-05-20 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1116AF/2020
 C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789-

EPI_ISL_462005
 2020-05-20 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C2459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16887T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_467713
 2020-05-20 2020-06-15
 United Kingdom hCoV-19/England/BRIS-13116C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23683T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_468354 MT628091
 2020-05-20 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1320/2020
 A1- C37Y C241T C1059T C3037T C6406T C8320T C9967T G11083T C14408T C17104T C17766T A23403G C23481T G25563T C27964T G28827T

EPI_ISL_468355 MT628092
 2020-05-20 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1322/2020
 ATTAAAG1- C37T C241T C1059T C3037T C6406T C8320T C9967T G11083T C14408T C17104T A23403G G24794T G25563T C27964T G28827T

EPI_ISL_469068
 2020-05-20 2020-06-17
 Sweden hCoV-19/Sweden/20-51618/2020
 C241T C3037T C7420T C14408T A23403G G24926T GGG28881AAC

EPI_ISL_469115
 2020-05-20 2020-06-17
 Singapore hCoV-19/Singapore/360/2020
 C190T T2791C C6310A C6312A C6638Y G11083T C13730T C19524T C23185T C23929T C28311T T28829C AAAAAAAAAAAA29892-

EPI_ISL_471429
 2020-05-20 2020-06-21
 Belgium hCoV-19/Belgium/ULG-10194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C10030T C14408T T15225C C15928T C17690T A18405G C18877T C22341T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_471714
 2020-05-20 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20690/2020
 C241T C355T C1059T C3037T A5011M C14408T A23403G C25317T G25563T C26078T C28893T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_471831
 2020-05-20 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20810/2020
 C241T C355T C1059T C3037T A5011M C11195M C14408T A23403G C25317T G25563T C26078T C28893T

EPI_ISL_471832
 2020-05-20 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20811/2020
 C241T C355T C1059T C3037T A5011M C12763T C14408T A23403G C25317T G25563T C26078T T28053G C28893T

EPI_ISL_471833
 2020-05-20 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20812/2020
 C241T C1059T C3037T A5011M C7528T C14408T C14481T G17790A G22599A A23403G C24023T G25563T C28893T

EPI_ISL_471834
 2020-05-20 2020-06-22
 United States hCoV-19/USA/MI-MDHHS-SC20813/2020
 C241T C355T C1059T C3037T A5011M G11083T C14408T A23403G G25563T C26078T G28027C C28893T

EPI_ISL_472889
 2020-05-20 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160076/2020
 ATTAAAG1- C241T C3037T T8944C C14408T C14741T A23403G

EPI_ISL_473102
 2020-05-20 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-162663/2020
 C241T G419A C829T C1059T C3037T G3994A G11670A C14408T C18508T A23403G G25563T G27415A G28371T

EPI_ISL_473147
 2020-05-20 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1629C4/2020
 C241T C829T C1059T C3037T C14408T A23403G G25563T G27415A G28371T G29027K

EPI_ISL_473158
 2020-05-20 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-162AB2/2020
 ATTA1- C241T C829T C1059T C3037T C14408T A23403G G25563T G27415A G28371T G29027T A29201T

EPI_ISL_473388
 2020-05-20 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FBE3/2020
 C241T C3037T C4794T G10097A C14408T A23403G C23731T T26957G C28278A G28580T GGG28881AAC

EPI_ISL_473389
 2020-05-20 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FBF2/2020
 G174A C241T C3037T G10097A C14408T A19946G A23403G C23731T G24193C G28580T GGG28881AAC

EPI_ISL_473390
 2020-05-20 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FC0E/2020
 C241T C3037T G10097A C14408T A19946G A23403G C23731T G24193C G28580T GGG28881AAC

EPI_ISL_473924
 2020-05-20 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6235/2020
 C241T G1590T C3037T C10798A G12514T C13862T C14408T G16677A A23403G G24998C T25580C C28836T C29640T

EPI_ISL_476705
 2020-05-20 2020-06-25
 Germany hCoV-19/Germany/NRW-MPP-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477273
 2020-05-20 2020-06-29
 United States hCoV-19/USA/MN-MDH-1183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T A4106G C11139T C14408T A23403G G25494T G25563T A26183G C28854T GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_477275
 2020-05-20 2020-06-29
 United States hCoV-19/USA/MN-MDH-1185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C556T C1059T C3037T C3737T A4106G C14408T A23403G G25494T G25563T A26183G C28854T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_477299
 2020-05-20 2020-06-29
 United States hCoV-19/USA/MN-MDH-1210/2020
 ATTA1- A35G C241T C1059T C3037T C14408T C16260T C21575T A23403G T25502C G25563T C28821A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_477300
 2020-05-20 2020-06-29
 United States hCoV-19/USA/MN-MDH-1211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T G11083T C14408T C16260T C21575T A23403G G25563T C28821A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_477793
 2020-05-20 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B2F0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C197T C1346T C5622T G11083T G13627T C14805T C15540T C20451T A21362G C21575T G22225T C22624- G23438T G26144T A28338G G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478077
 2020-05-20 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6673C C14408T G15438T A20268G A23403G C25463T TGAT27757- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478132
 2020-05-20 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A G12163A C13862T C14408T A23403G C28367T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478270
 2020-05-20 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479221
 2020-05-20 2020-06-30
 United Kingdom hCoV-19/England/SHEF-C674D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7675T T8908C C14408T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479537
 2020-05-20 2020-06-30
 India hCoV-19/India/NIV-36461/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C190T C241T C3037T G4128T C5700A C7600T A13189G A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479538
 2020-05-20 2020-06-30
 India hCoV-19/India/NIV-37486/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T G20477T A23403G C27944T GGG28881AAC A29815T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479587
 2020-05-20 2020-06-30
 Singapore hCoV-19/Singapore/509/2020
 G45K G1323R C6310A C6312A G11083T C13730T C19524T C21997T T22672W C23929T C23996T C27600T C28311T C29509T AAAAAAAAAAAA29892-

EPI_ISL_480351 MT772520
 2020-05-20 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G509A C1059T C3037T C14408T C18032T C23271T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480352 MT772521
 2020-05-20 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T G3871T G7252A C14076T C14408T A23403G A29797G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480353 MT772522
 2020-05-20 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18568T C18877T G20002T A23040T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480354 MT772523
 2020-05-20 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C A2550G C3037T G3871T T3931C A13712G C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480355 MT772524
 2020-05-20 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G509A C1059T C3037T C14408T C18032T C23271T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480356 MT772525
 2020-05-20 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1068A C3037T C14408T A23403G T27299C GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480357 MT772526
 2020-05-20 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1068A C3037T C14408T A23403G T27299C GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480358 MT772527
 2020-05-20 2020-07-01
 United States SARS-CoV-2/human/USA/IL-UW-376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480372 MT772541
 2020-05-20 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482574
 2020-05-20 2020-07-04
 India hCoV-19/India/NCDC3820_CSIR-IGIB/2020
 C241T C3037T A7478G C13730Y C14408Y C18877Y T20494Y T20497W A23403G A25241G G25563K C26735T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482587
 2020-05-20 2020-07-04
 India hCoV-19/india/NCDC3832_CSIR-IGIB/2020
 C241T T1947Y C3037T G5326T T6552K C14408Y C18877T C22444T A23403G G25563K C26735T C28292A C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482960
 2020-05-20 2020-07-06
 United States hCoV-19/USA/MN-MDH-1239/2020
 ATTAAAGGTT1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_482961
 2020-05-20 2020-07-06
 United States hCoV-19/USA/MN-MDH-1240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482962
 2020-05-20 2020-07-06
 United States hCoV-19/USA/MN-MDH-1241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T G2664T C3037T C6026T C10319T C13665T C14408T A23122G A23403G G25563T C27964T C28531T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483599
 2020-05-20 2020-07-08
 Singapore hCoV-19/Singapore/576/2020
 ATTA1- C3695T C6310A C6312A G11083T C13730T C19524T C23185T C23929T G25302A C26549T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483603
 2020-05-20 2020-07-08
 Singapore hCoV-19/Singapore/580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3695T C6310A C6312A G11083T C13730T C19524T C23185T C23929T G25302A C26549T C28311T A29500G AAAAAAAAAAAA29892-

EPI_ISL_486343 MT750497
 2020-05-20 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C11916T C14408T C18998T C19145T A23403G G25563T G29540A

EPI_ISL_487408
 2020-05-20 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-2/2020
 C241T C1059T C3037T C6406T C7735T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487433
 2020-05-20 2020-07-14
 Belgium hCoV-19/Belgium/ITM_C2181/2020
 A361G C3589T C8782T C18959T G22468T G26152A T28144C G28878A G29742A

EPI_ISL_487434
 2020-05-20 2020-07-14
 Belgium hCoV-19/Belgium/ITM_C2182/2020
 A361G C3589T A8095C C8782T C18959T C19164T G22468T G26152A T28144C G28878A G29742A

EPI_ISL_487436
 2020-05-20 2020-07-14
 Belgium hCoV-19/Belgium/ITM_C2185/2020
 A361G C3589T C8782T C18959T G22468T G26152A T28144C G28878A G29742A

EPI_ISL_487528
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B6A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A A12180G C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487535
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B6DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487549
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B5E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286A G7038A C14408T C15212T C21707T A23403G C26088Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487553
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105K G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487579
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B62A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C12546T C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487580
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487583
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B61B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C12546T C14408T C19524T A23403G C23731T G28580T A28870T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487588
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B54B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T C9365T G10097A C13372T C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487590
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B5F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G6368A A7766G G7873T C9365T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487591
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B7EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487594
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T C9365T G10097A C13372T C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487598
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T G27382T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487604
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B5D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T G15672T A23403G C23731T G27506T G28580T GGG28881AAC C28892T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487605
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B7DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487610
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B6C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6732C G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487612
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B6B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C12546T C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487634
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T C14408T C20233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488843
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A0E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5425T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488871
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A0F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C8619T C14408T C18877T A23403G G25563T C26753T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489113
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-292E07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T C25714T C25771T C27739T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489140
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-292E16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8042A G10097A G10642T C14408T C16616T A23403G C23731T C25714T G28580T GGG28881AAC G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489141
 2020-05-20 2020-07-14
 United Kingdom hCoV-19/England/NORT-292DFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T T18285Y A23403G C23731T C25714T C25771T C27739T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490380
 2020-05-20 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A2404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T G428R C3037T C11020Y C14408T A23403G C28720Y GGG28881AAC C29421Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_490382
 2020-05-20 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A2431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G127T C241T C3037T C3373A C14408T C14688T C17463T A23403G G27706T GGG28881AAC

EPI_ISL_492484
 2020-05-20 2020-07-20
 United Kingdom hCoV-19/England/NORT-29AA0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T A11219G C14408T C19955T G22093A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492490
 2020-05-20 2020-07-20
 United Kingdom hCoV-19/England/NORT-29A9FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T A11219G C14408T C19955T G22093A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493460
 2020-05-20 2020-07-21
 United Kingdom hCoV-19/England/NORT-285C67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T C14408T C19524T G22093A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493977
 2020-05-20 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-160ED6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6990T C14408T C16596T A23403G G25650K C29200T A29359M

EPI_ISL_494208
 2020-05-20 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1681A8/2020
 AT1- C241T C3037T C3373A G5150T C14408T C14688T T21670K A23403G C28603T GGG28881AAC AAAA29900-

EPI_ISL_495100
 2020-05-20 2020-07-22
 United Kingdom hCoV-19/England/BRIS-1333EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6732C G7675K G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495117
 2020-05-20 2020-07-22
 United Kingdom hCoV-19/England/BRIS-1333DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C486T C3037T A4027G C14408T G15535T T19839C A23403G C26681T GGG28881AAC G29414T G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495444
 2020-05-20 2020-07-22
 Turkey hCoV-19/Turkey/KU-034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C2509T C3037T C13620T C14408T C14724T A23403G G24262T G27703T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_495447
 2020-05-20 2020-07-22
 Turkey hCoV-19/Turkey/KU-037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C2509T C3037T G5015A C13620T C14408T C14724T A23403G G24262T G27703T GGG28881AAC TCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29753-

EPI_ISL_495863 MT821645
 2020-05-20 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1413/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T G16912T A23403G C23481T G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495875 MT821752
 2020-05-20 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1425/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495876 MT821558
 2020-05-20 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1426/2020
 ATT1- C241T C1059T G1736A C2102T C3037T C4455T C14408T G16912T A23403G G25563T C25731T G28079T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495877 MT821553
 2020-05-20 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1427/2020
 AT1- C241T C3037T C9863T C14408T C15933T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_495878 MT821744
 2020-05-20 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1428/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T C14408T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495883 MT821621
 2020-05-20 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1433/2020
 ATT1- C241T A2161G C3037T C5758T C14408T C16376T T18453C C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495891 MT821717
 2020-05-20 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1441/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T A23403G G25563T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496525
 2020-05-20 2020-07-24
 India hCoV-19/India/NCCS_NR1922/2020
 ATTA1- C16T C241T C313T G1149T C3037T C5700A G10832A C14408T A23403G GGG28881AAC T29867-

EPI_ISL_497875
 2020-05-20 2020-07-25
 India hCoV-19/India/NCCS_NR2038/2020
 A1- C241T C313T C3037T C5700A C14408T G21255C A23403G C26469- GGG28881AAC C29774T AAA29901-

EPI_ISL_497886
 2020-05-20 2020-07-25
 India hCoV-19/India/AFMC_5075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G219T C241T C3037T A6836- C8311T C14408T A23403G G26056T G26065T AAA29901-

EPI_ISL_499995
 2020-05-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A245F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2630G C3037T A6565G C14408T C18877T G23120T A23403G G25563T

EPI_ISL_500000
 2020-05-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A263B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4391A C14408T C15848Y C16084T T19893C A23403G C26625T T27360Y GGG28881AAC C29870A

EPI_ISL_500002
 2020-05-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A26D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7604T C14408T C18526T A20268G A23403G

EPI_ISL_500003
 2020-05-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A26E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T C18744T A18978R A23403G G25563T A29391G

EPI_ISL_500004
 2020-05-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A26FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4486A T11660A C14408T G16912T A20268G C21622T A23403G C29870A

EPI_ISL_500006
 2020-05-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A2756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C19145T A23403G C25587T C27046T C28344A GGG28881AAC C29870A

EPI_ISL_500007
 2020-05-20 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A2774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C9474T C14408T C15237Y A23403G C26133T GGG28881AAC C29870A

EPI_ISL_500704
 2020-05-20 2020-07-29
 Australia hCoV-19/Australia/NSW2306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G376T C2416T C3037T G8371T T9642G G11083T C14408T G15543T C22477T A23403G G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500980
 2020-05-20 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106A92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T T10654C C14408T A23403G A25448G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501048
 2020-05-20 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106AA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C7765A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508408
 2020-05-20 2020-08-04
 India hCoV-19/India/IK90/2020
 C241T C900T C1884T C3037T C6312T A13498G T13983C C14408T G23282T A23403G G29868A

EPI_ISL_508409
 2020-05-20 2020-08-04
 India hCoV-19/India/IK91/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C900T C1884T C3037T C6312T A13498G T13983C C14408T A23403G G29868A

EPI_ISL_508410
 2020-05-20 2020-08-04
 India hCoV-19/India/IK92/2020
 ATTAAAGGTT1- C241T C3037T C14408T G21523T C21707T T22357C A23403G G29868A

EPI_ISL_508464
 2020-05-20 2020-08-04
 India hCoV-19/India/S74/2020
 ATT1- C241T C313T C3037T C5700A C14408T T18083C A23403G GGG28881AAC G29868A

EPI_ISL_508465
 2020-05-20 2020-08-04
 India hCoV-19/India/S75/2020
 C241T C313T C3037T C5700A C14408T T18083C A23403G A23923C GGG28881AAC G29868A

EPI_ISL_508469
 2020-05-20 2020-08-04
 India hCoV-19/India/S79/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C313T C3037T C5700A GC9245TT C11653T C14408T C23188T A23403G A24461G C27874T GGG28881AAC G29868A

EPI_ISL_508690
 2020-05-20 2020-08-04
 Germany hCoV-19/Germany/BW-UT-011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G14772T A23403G T25550A G25922T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_508691
 2020-05-20 2020-08-04
 Germany hCoV-19/Germany/BW-UT-012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C24912T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_508699
 2020-05-20 2020-08-04
 Germany hCoV-19/Germany/BW-UT-024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_508700
 2020-05-20 2020-08-04
 Germany hCoV-19/Germany/BW-UT-025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A6411G C14408T A20013G A23403G T25550A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_508701
 2020-05-20 2020-08-04
 Germany hCoV-19/Germany/BW-UT-026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G14772T A23403G C23929T T25550A G25922T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_508703
 2020-05-20 2020-08-04
 Germany hCoV-19/Germany/BW-UT-028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1758T G2531A C3037T C14408T G15705T A23403G T25550A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_508704
 2020-05-20 2020-08-04
 Germany hCoV-19/Germany/BW-UT-029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T A23403G G25563T C27427T A29316G A29334G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_509092
 2020-05-20 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12880T C14408T G20980A A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509093
 2020-05-20 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12880T C14408T G20980A A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509094
 2020-05-20 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12880T C14408T G20980A A23403G AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_509117
 2020-05-20 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12880T C14408T G20980A A23403G C23638T AA29902-

EPI_ISL_510517
 2020-05-20 2020-08-06
 Spain hCoV-19/Spain/COV005489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1127T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510622
 2020-05-20 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2285/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510626
 2020-05-20 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2289/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T A28070C G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510627
 2020-05-20 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2291/2020
 ATTAAAGGTT1- T490A G521T C3177T C4618A C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_510844
 2020-05-20 2020-08-07
 Sweden hCoV-19/Sweden/20-51748/2020
 C241T C1059T C3037T C14408T A23403G G24368T T25525C G25563T C29836T

EPI_ISL_511812
 2020-05-20 2020-08-08
 United States hCoV-19/USA/CA-IGI-0057/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C832T C3037T C6628T C14408T C14980T A23403G G28378T GGG28881AAC

EPI_ISL_511813
 2020-05-20 2020-08-08
 United States hCoV-19/USA/CA-IGI-0058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C832T C3037T C6628T C14408T C14980T A23403G G28378T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_512196
 2020-05-20 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C3330T G8572T C14408T A20268G C21588T A23403G G25297T G25598C G28628T C28854T

EPI_ISL_512212
 2020-05-20 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T G4300T G7235T C14408T A20268G A23403G C28854T G29825T

EPI_ISL_512215
 2020-05-20 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1877/2020
 C241T C527T C3037T C14408T A20268G A23403G T24076C G24547A G26372T C27630T C28854T

EPI_ISL_512216
 2020-05-20 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1878/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1473T C3037T C14408T C15738T A23403G GGG28881AAC G29473A CATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29724-

EPI_ISL_512217
 2020-05-20 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1880/2020
 C21T C241T C1473T C3037T C14408T C15738T A23403G GGG28881AAC G29473A CATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29724-

EPI_ISL_512218
 2020-05-20 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1887/2020
 ATTAAAGGTTTA1- C21T C241T C1473T C3037T C10755T C14408T A23403G GGG28881AAC G29473A CATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29724-

EPI_ISL_512219
 2020-05-20 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1888/2020
 ATTAAAGGTTTA1- C21T C241T C1473T C3037T C10755T C14408T A23403G GGG28881AAC G29473A CATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29724-

EPI_ISL_512220
 2020-05-20 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_512344
 2020-05-20 2020-08-11
 United Kingdom hCoV-19/England/LIVE-A2765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4391A C14408T C15848Y C16084T C19185T T19893C A23403G C26625T GGG28881AAC

EPI_ISL_513828 MW036051
 2020-05-20 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2400/2020
 C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513875 MW036067
 2020-05-20 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2471/2020
 AT1- C241T C1059T C3037T C6927T C11916T C14408T C18998T A23403G G25563T G25947C G26779K C27213Y G27703T G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_513892 MW036049
 2020-05-20 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCA1- C241T C3037T C9430T C14408T G19969A A20268G A23403G C25624A C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513905 MW036068
 2020-05-20 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2537/2020
 ATTA1- G198R C241T C1059T C3037T C3330Y G6485K C11916T C14408T C18998T C19145T A23403G G25563T G29540A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514156 MT890289
 2020-05-20 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0810/2020
 ATTAAAGGTTTA1- C241T C1427T C3037T C6286T A6657C C14408T C18877T A23403G C24358T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515441
 2020-05-20 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0185/2020
 ATTAAA1- C241T C379A C1059T A2745G C3037T C4113T CC14407TT A20036C A23403G G25563T G27478T G29427T

EPI_ISL_515442
 2020-05-20 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0186/2020
 ATTAAA1- C241T C379A C1059T C3037T G9652T C11102T CC14407TT A23403G G25563T AAAAAA29898-

EPI_ISL_515443
 2020-05-20 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0187/2020
 ATT1- C241T C379A C1059T C3037T G9652T C11102T CC14407TT A23403G G25563T

EPI_ISL_515444
 2020-05-20 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0188/2020
 C241T C379A C1059T C3037T C3261T C10029T CC14407TT C23170T A23403G G25563T C29370T

EPI_ISL_515445
 2020-05-20 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0189/2020
 ATTA1- C241T C1059T C3037T C6406T C9967T A10761G C14408T C14790T G15652T C17104T C22224T A23403G G25563T C27964T

EPI_ISL_515446
 2020-05-20 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0190/2020
 C241T C1059T C3037T C6406T C9967T C14408T C14790T G15652T C17104T C22224T A23403G G25563T C27964T

EPI_ISL_518824
 2020-05-20 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-15095/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G3839A G10265A C14408T C16293T A23403G A25747G GGG28881AAC AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827T

EPI_ISL_520695
 2020-05-20 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290250569/2020
 C8782T T9477A C15368T C19522T T28144C C28657T C28863T

EPI_ISL_520696
 2020-05-20 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290250732/2020
 G6344A C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_520697
 2020-05-20 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290250769/2020
 C241T C3037T A8948G C14408T A23403G C23854T GGG28881AAC

EPI_ISL_520698
 2020-05-20 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290250781/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_520699
 2020-05-20 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290254285/2020
 C241T C3037T G3496A T11638C C14408T A23403G G25687T GGG28881AAC C29708T CCACGCGGAGT29738-

EPI_ISL_520700
 2020-05-20 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290259618/2020
 C241T C1101T C3037T A6466G C7945T C14408T A23403G

EPI_ISL_520701
 2020-05-20 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290262866/2020
 C8782T C9286T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_520702
 2020-05-20 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290263078/2020
 C241T C3037T G5924A C14408T A23403G C23506T GGG28881AAC

EPI_ISL_520703
 2020-05-20 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290263088/2020
 C241T C3037T G5924A C14408T A23403G C23506T GAT27382CTC GGG28881AAC

EPI_ISL_520704
 2020-05-20 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290264100/2020
 C241T C1973T C3037T C14408T A23403G GGG28881AAC C29095T

EPI_ISL_523128
 2020-05-20 2020-08-26
 Netherlands hCoV-19/Netherlands/FL-EMC-19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G G25500T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523375
 2020-05-20 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10800C C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523952
 2020-05-20 2020-08-27
 United Arab Emirates hCoV-19/United Arab Emirates/L3290260632/2020
 G5194T C8782T G11230T T14394C G25273T T28144C G28167A T28465C

EPI_ISL_524081
 2020-05-20 2020-08-27
 United States hCoV-19/USA/UT-08281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2527T C3037T C4780T C7428T C14408T G16365T A20268G C20719T G22813A A23403G C26527T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524147
 2020-05-20 2020-08-27
 United States hCoV-19/USA/UT-08364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A C19145T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524170
 2020-05-20 2020-08-27
 United States hCoV-19/USA/UT-08387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T G4300T G5739A C8139T C14408T A23403G C23802T G25563T A25864G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524178
 2020-05-20 2020-08-27
 United States hCoV-19/USA/UT-08398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6512C C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524186
 2020-05-20 2020-08-27
 United States hCoV-19/USA/UT-08408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T C17125T T19839C A22320G A23403G G25523T G25563T C27964T T29685G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524196
 2020-05-20 2020-08-27
 United States hCoV-19/USA/UT-08418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6512C C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524204
 2020-05-20 2020-08-27
 United States hCoV-19/USA/UT-08428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C2559T C3037T C6541T C11379T C14408T G19072T A22320G A23403G G25563T C27964T T28823C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524217
 2020-05-20 2020-08-27
 United States hCoV-19/USA/UT-08442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T G4958A C6541T C11379T C14408T T16461C A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524236
 2020-05-20 2020-08-27
 United States hCoV-19/USA/UT-08464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T G26754A G27556T C27964T G28899A G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524245
 2020-05-20 2020-08-27
 United States hCoV-19/USA/UT-08475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T G28899A G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524290
 2020-05-20 2020-08-27
 United States hCoV-19/USA/UT-08527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4946C C14408T C15352T A20268G A21917G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524807
 2020-05-20 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T G28899A G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525345
 2020-05-20 2020-08-29
 United States hCoV-19/USA/UT-UPHL-04485/2020
 C241T G625T T833C C1059T C3037T C6541T C14408T A15436G A22320G A23403G G25244T G25563T C27964T C29870A

EPI_ISL_525346
 2020-05-20 2020-08-29
 United States hCoV-19/USA/UT-UPHL-04487/2020
 C241T C1059T C3037T C5691T A7870G C10733T G12315A C14408T A23403G G25563T G27670T C27964T G29543T C29870M

EPI_ISL_525430
 2020-05-20 2020-08-29
 Ecuador hCoV-19/Ecuador/USFQ-163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T C17690T C18877T A23403G G25563T

EPI_ISL_526268
 2020-05-20 2020-09-01
 Canada hCoV-19/Canada/ON-UHTC_0123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4255A T9157C C14408T C14724T A23403G GGG28881AAC G29781T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530102
 2020-05-20 2020-09-10
 Spain hCoV-19/Spain/MD-R52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C26088T T28144C A29749G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530186 MT997708
 2020-05-20 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1590/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T T9070C C13994T C14408T C14877T A23403G G25563T C27393T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_534334
 2020-05-20 2020-09-13
 Spain hCoV-19/Spain/MD-HRC-88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1992G C3037T G7675T C14408T C16303T A20268G A23403G AAGTGACAACAGATGTTTCATCTCGTTGACTTTC27190- A29521T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534842
 2020-05-20 2020-09-14
 United Kingdom hCoV-19/England/OXON-B31DC/2020
 C241T C3037T T11418C C14074T C14408T G17259T G19072T C21597T A23403G C25066T GGG28881AAC

EPI_ISL_534845
 2020-05-20 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3215/2020
 C241T C3037T C14074T C14408T G19072T C21597T A23403G C25066T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_534928
 2020-05-20 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C3037T C6525T C14408T T18398C C22482A A23403G T24274C G24781T C25344T GGG28881AAC A29883D AAAAAAAAAAAAAAA29889-

EPI_ISL_537267
 2020-05-20 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2F0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14408T G15438T A20268G A23403G C24026T G28690T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539538
 2020-05-20 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2012571/2020
 C241T G2129A C3037T A3703G A10766G C14408T T19474C A20268G C22347S T22387Y A23403G C27005T

EPI_ISL_543955
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-3046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545063
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T G13514A C14408T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545065
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545112
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C344T C1601T C3037T C8499T C14408T C18060T T18231C A23403G GGG28881AAC G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545115
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4931A C12885T C14408T C23191T C23277T A23403G T25547A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545116
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C17104T A23403G G23587T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545120
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5806T C14408T C20474T A23403G A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545130
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545131
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6352T C6380T C14408T C19011T C21057T A23403G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545132
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T A28586G G28881A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545144
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545145
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A642G C1059T C3037T C3096T G3242T C9967T C14408T T22673C A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545152
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T C3037T C10202T C14408T C23191T A23403G G25563T C27684T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545156
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3066T G13379A C14408T C18788T A23403G C24023T G25563T C27964T C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545160
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A5011C C14408T G17658T A23403G G25563T C26224T C27434T C28893T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545172
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16163T G20397A A23403G C27630T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545182
 2020-05-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-2208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2324A A2969G C3037T C14408T C17104T A23403G G25563T G26389T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559441
 2020-05-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49E4DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23127T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559449
 2020-05-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49E8FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7173T G10265A C14408T G20342T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559526
 2020-05-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49E355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23127T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559541
 2020-05-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49E980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T G11083T C14408T C19263T C22477T T22657C A23403G G25563T C29253T C29274T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559586
 2020-05-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49EC3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T G22199T A23403G C23731T GGG28881AAC G29392T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559590
 2020-05-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49E20D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T G22014K G22199T A23403G C23731T G25906T GGG28881AAC G29392T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559600
 2020-05-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49E391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3170T C6336T C14396Y C14408T A23403G T26260G C27673T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559710
 2020-05-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-46AAC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- C3037T G10097A C13994T C14408T T19590C A23403G C23731T G25879T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559723
 2020-05-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-467434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G T12181K C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559731
 2020-05-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-467DEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21624T A23403G C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559735
 2020-05-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-46A3E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- C3037T G10097A C13994T C14408T T19590C A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560391
 2020-05-20 2020-09-29
 Lithuania hCoV-19/Lithuania/C20-05-R10/2020
 ATTAAA1- C241T C1593T C3037T C14408T G21624T A23403G C25945G C27476T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_560404
 2020-05-20 2020-09-29
 Lithuania hCoV-19/Lithuania/C20-05-R9/2020
 A12G AC14TA T17C CCC19GGG G23A TA25GT C28T C241T C1593T C3037T C14408T G21624T A23403G C25945G C27476T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_560973
 2020-05-20 2020-09-30
 Sweden hCoV-19/Sweden/20-51749/2020
 C241T C1059T C1251A C3037T C7165T C11665T C14408T A23403G G24368T G25563T GAT27382CTC

EPI_ISL_568689
 2020-05-20 2020-10-02
 Indonesia hCoV-19/Indonesia/JK-EIJK-38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2589G C3037T T11313C A11869G C14408T C18877T A23403G G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568983
 2020-05-20 2020-10-02
 France hCoV-19/France/IHU-0830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T A1982G C3037T G8039T C14408T G15438A G16855T C17104T G17331T A23403G G25563T A26072T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

LR877389
 2020-05-20 2020-08-17
 Poland covid_hub_pl_ibch_0007
 

MW001274
 2020-05-20 2020-09-14
 United States SARS-CoV-2/human/USA/266-NP-OP/2020/P1
 C241T C1500A C3037T A3090G G11083T C13501T C14408T C18512T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW001276
 2020-05-20 2020-09-14
 United States SARS-CoV-2/human/USA/266-NP-OP-TCE/2020/P1
 C241T C1500A C3037T A3090G G11083T C13501T C14408T C18512T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_455420 MT539158
 2020-05-21 2020-05-29
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_007/2020
 C241T A1163T C3037T G13617T C14340T C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_455458 MT539159
 2020-05-21 2020-05-30
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_006/2020
 C241T A1163T G1820A G2243A C3037T A3234G C14408T A23403G GGG28881AAC G29736T AAAAAAAAAAA29893-

EPI_ISL_455459 MT539160
 2020-05-21 2020-05-30
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C1063T A1163T C3037T C5183T C14408T A23403G C26645T GGG28881AAC TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807-

EPI_ISL_456728
 2020-05-21 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2E7B/2020
 C241T C1059T C1218T C3037T C9286T C14408T A23403G G25563T C27847T G28378T G28899C

EPI_ISL_456731
 2020-05-21 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2EB7/2020
 C241T C3037T A9548G C11379T C14408T A23403G GGG28881AAC

EPI_ISL_456747
 2020-05-21 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B3029/2020
 C241T A2554G C2650T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C25624T GGG28881AAC

EPI_ISL_456750
 2020-05-21 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B3065/2020
 C241T C2416T C3037T C4900T C14408T C16869T C19269T G21220T A23403G G25563T C25665T

EPI_ISL_456754
 2020-05-21 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B3232/2020
 C241T A574G C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_456755
 2020-05-21 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B3250/2020
 C241T C3037T C11606T G12268A C14408T A23403G C25624T C26002A GGG28881AAC

EPI_ISL_456994
 2020-05-21 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5249/2020
 C241T T1576C C3037T C14408T A20268G A23403G C25844T C28854T

EPI_ISL_456996
 2020-05-21 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5251/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29580T

EPI_ISL_459919
 2020-05-21 2020-06-05
 India hCoV-19/India/MaxCov0017_CSIR-IGIB/2020
 C1707Y C6310M C6312A A6876W G11083T G12685K C13730T A15435R C23929T T24622Y C28311T

EPI_ISL_459920
 2020-05-21 2020-06-05
 India hCoV-19/India/MaxCov0018_CSIR-IGIB/2020
 C1707Y G2603R C6310M C6312A G11083T G12685K C13730T A15435R C16490M A21176R C23929T T24622Y C28311T

EPI_ISL_460861
 2020-05-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T A10655G C11109T C13458T C14408T A23403G G25563T C27654T C27741T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460862
 2020-05-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460863
 2020-05-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460864
 2020-05-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460865
 2020-05-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460866
 2020-05-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T A3780G G5425T C8809T C11109T C14408T G14575T C15141T A23403G G25563T C29370T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460867
 2020-05-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460993
 2020-05-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T A8307G A8946G C11109T C14408T A23403G G25563T A27921T C28695T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460994
 2020-05-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C10029T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460995
 2020-05-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460996
 2020-05-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460997
 2020-05-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T A8946G C11109T C14408T A23403G G25563T A27921T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460998
 2020-05-21 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461553
 2020-05-21 2020-06-06
 United Kingdom hCoV-19/England/CAMB-1B319F/2020
 C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T

EPI_ISL_461924
 2020-05-21 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1117CA/2020
 C241T G704A C3037T C5051T C8802T C9979T C11758T C14408T T21890C A23403G A24425C G27948T GGG28881AAC

EPI_ISL_461926
 2020-05-21 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1117E8/2020
 C241T C1862T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_461927
 2020-05-21 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1117F7/2020
 C241T G1463T C1862T C3037T C4002T C6285T G10097A G11083T C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_461928
 2020-05-21 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111803/2020
 C241T C1862T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T G24872T GGG28881AAC

EPI_ISL_461931
 2020-05-21 2020-06-06
 United Kingdom hCoV-19/England/NOTT-11184F/2020
 C241T C3037T C14408T C16575T A23403G T27264G GGG28881AAC

EPI_ISL_462098
 2020-05-21 2020-06-07
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_050/2020
 C241T A1163T C1884T C3037T C3961T C3987T C4551T G11222T C14408T A23403G GGG28881AAC

EPI_ISL_467299
 2020-05-21 2020-06-12
 Morocco hCoV-19/Morocco/RA85/2020
 AT1- C241T C3037T C12412T C14408T C15324T G19684A -20199C A20207G A23403G C25831T G26367A T26371C G26375A AT26378GG TT26384GC A26616T T28219C A28263G TA28693GC G29737C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_467493
 2020-05-21 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0143/2020
 ATTAAAGGT1- C241T C3037T T9508C C14408T C22675T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_468356 MT628093
 2020-05-21 2020-06-16
 United States SARS-CoV-2/human/USA/CA-CZB-1324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C7834T G11083T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_469147
 2020-05-21 2020-06-17
 Singapore hCoV-19/Singapore/398/2020
 C6310A C6312A T8583W G11083T C13730T C16260T C19524T C21772T C23185T C23929T C27999Y C28311T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_470747
 2020-05-21 2020-06-19
 United States hCoV-19/USA/MN-MDH-1067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T C29367T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_470748
 2020-05-21 2020-06-19
 United States hCoV-19/USA/MN-MDH-1068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C3737T T6976C C11919T C14408T A23403G G25563T A26183G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_470749
 2020-05-21 2020-06-19
 United States hCoV-19/USA/MN-MDH-1069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T G11083T C14408T A23403G G25563T G26172T A26183G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_471588
 2020-05-21 2020-06-22
 India hCoV-19/India/CCMB_L1208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T A513G C1909T C2358T C3037T C5184T T8296C C12076T C14408T C18877T A23403G G25563T GC27882CT G28690T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_472326
 2020-05-21 2020-06-23
 United Kingdom hCoV-19/England/NORW-EBF86/2020
 ATTAA1- C241T C3037T G5008T G9928T C14408T C14898T A23403G C26681T C28754T GGG28881AAC

EPI_ISL_472845
 2020-05-21 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15FCD0/2020
 C241T C3037T C3373A G5150T C14408T C14688T T21670G A23403G C28603T GGG28881AAC

EPI_ISL_472846
 2020-05-21 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15FCEF/2020
 AT1- C241T C2232T C3037T C14408T C14877T C19185T G23012C A23403G A23899C C24034T C27791T T28382C GGG28881AAC

EPI_ISL_472892
 2020-05-21 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1600A3/2020
 AT1- C241T A489G C3037T T5465C G6387A C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC

EPI_ISL_472902
 2020-05-21 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160182/2020
 ATTA1- C241T A489G C3037T T5465C G6387A C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC

EPI_ISL_473385
 2020-05-21 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FBB6/2020
 C241T C1221T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_473386
 2020-05-21 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FBC5/2020
 C106T C203T C241T C3037T G10097A C14408T A19946G A23403G C23731T G24193C G28580T GGG28881AAC

EPI_ISL_473392
 2020-05-21 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FC59/2020
 C241T A2576T C3037T C5175T C6401T C14408T A23403G GGG28881AAC

EPI_ISL_473925
 2020-05-21 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6243/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473926
 2020-05-21 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6244/2020
 C241T G1590T C3037T C10798A G12514T C13862T C14408T A23403G G24998C T25580C C28836T G29616T C29640T

EPI_ISL_473927
 2020-05-21 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6245/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473928
 2020-05-21 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6246/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473929
 2020-05-21 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6247/2020
 C241T G1590T C3037T C10798A G12514T C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_473930
 2020-05-21 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6248/2020
 C241T G1590T C3037T C3429T C10798A C13862T C14408T A23403G G24998C T25580C C28836T C29640T

EPI_ISL_476027
 2020-05-21 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20890/2020
 C241T C1059T T2815C C3037T C14408T A23403G G25563T

EPI_ISL_476093 LR824502 LR861071
 2020-05-21 2020-06-25
 Switzerland 140028
 C241T C823Y C3037T A5257W C14408T G15958T A19362R T19458W G19525R A19548R A22438R T22516W A23403G C26801T T27374C GGG28881AAC G29260T C29421Y

EPI_ISL_476757
 2020-05-21 2020-06-25
 United States hCoV-19/USA/MN-MDH-1172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_476758
 2020-05-21 2020-06-25
 United States hCoV-19/USA/MN-MDH-1173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T

EPI_ISL_476759
 2020-05-21 2020-06-25
 United States hCoV-19/USA/MN-MDH-1174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T T6976C C11919T C14408T A23403G G25563T A26183G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_476760
 2020-05-21 2020-06-25
 United States hCoV-19/USA/MN-MDH-1175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C3737T A10872C C14408T A23403G G25563T A26183G C28854T C29200T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_476761
 2020-05-21 2020-06-25
 United States hCoV-19/USA/MN-MDH-1176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_477127
 2020-05-21 2020-06-28
 Bangladesh hCoV-19/Bangladesh/CHRF_0014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C2040T C3037T C14408T C16887T G19723T C19901T A23403G C25504G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477272
 2020-05-21 2020-06-29
 United States hCoV-19/USA/MN-MDH-1182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C3737T T5819G C14408T A23403G G25494T G25563T A26183G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_477301
 2020-05-21 2020-06-29
 United States hCoV-19/USA/MN-MDH-1212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C9866T C14408T A14747G A18195G A20755C G22017T A23403G G25563T G26775T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_478085
 2020-05-21 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4058T C10798A G12163A C13862T C14408T A23403G G28300C C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478086
 2020-05-21 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11794G A12026T C14408T A23403G G26450A A28856C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478089
 2020-05-21 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A G12163A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478128
 2020-05-21 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4288T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478134
 2020-05-21 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5877G G10097A C10369T C14408T A23403G C23731T C25572T GTTCTA28090- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478136
 2020-05-21 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A363G C2146T C3037T C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478142
 2020-05-21 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A19515G A23403G C23731T GTTCTA28090- T28360A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478144
 2020-05-21 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9344T C10798A C13862T C14408T C21575T C21614T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479539
 2020-05-21 2020-06-30
 India hCoV-19/India/NIV-37502/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C3634T C4891T C14408T C15324T A23403G AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479540
 2020-05-21 2020-06-30
 India hCoV-19/India/NIV-37681/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T G2879A C3037T C5700A G11243T C14408T G15372T C21234A A23403G G27676A GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479541
 2020-05-21 2020-06-30
 India hCoV-19/India/NIV-37985/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T G16647A A23403G G24933T GGG28881AAC G29179T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479764
 2020-05-21 2020-07-01
 United States hCoV-19/USA/FL-Miami-05_UMTL-9TXV/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T AAGTCATTT686- C1059T G2808A C3037T T10387G C14408T A23403G G25563T A26433G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_480359 MT772528
 2020-05-21 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8179T C13837T C14408T G15708T C22482T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480360 MT772529
 2020-05-21 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T C21431T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480362 MT772531
 2020-05-21 2020-07-01
 United States SARS-CoV-2/human/USA/IL-UW-380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C14408T C22624T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480368 MT772537
 2020-05-21 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14183T C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480370 MT772539
 2020-05-21 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481116
 2020-05-21 2020-07-02
 India hCoV-19/India/ILSCV26793/2020
 G22468T ACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29731-

EPI_ISL_481118
 2020-05-21 2020-07-02
 India hCoV-19/India/ILSCV27381/2020
 C241T C313T C3037T C14408T A23403G C28657T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_481119
 2020-05-21 2020-07-02
 India hCoV-19/India/ILSCV27406/2020
 C241T C313T G1946T C3037T C5700A C13458T C14408T T22162C A23403G C28657T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_481120
 2020-05-21 2020-07-02
 India hCoV-19/India/ILSCV27409/2020
 C241T C313T C3037T C14408T A23403G G27541T C28657T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481121
 2020-05-21 2020-07-02
 India hCoV-19/India/ILSCV27713/2020
 C241T C3037T A10761G C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481125
 2020-05-21 2020-07-02
 India hCoV-19/India/ILSCV28062/2020
 A2705G C8782T G14500T G22468T C24358A T28144C G28878A G29742A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_482590
 2020-05-21 2020-07-04
 India hCoV-19/india/NCDC4402_CSIR-IGIB/2020
 T78K C241T C3037T C4586T T8598Y G11405S C13730Y C14408Y C18877T T21886Y C22444T A23403G G25563K C26735T G26775T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482701
 2020-05-21 2020-07-05
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_004/2020
 C241T C832T A1163T C3037T G11222T C14408T A23403G T28053C GGG28881AAC

EPI_ISL_484476
 2020-05-21 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C8D1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484487
 2020-05-21 2020-07-08
 United Kingdom hCoV-19/England/SHEF-CA970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7675T T8908C C14408T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486361 MT750510
 2020-05-21 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2139/2020
 ATTAAAGG1- C241T C1059T C3037T T3478Y C5540A G11083K C11916T C14408T C18998T C19145T A23122V A23403G G25563T C27513Y G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486362
 2020-05-21 2020-07-10
 United States hCoV-19/USA/CA-CZB-2140/2020
 C241T C1059T C3037T C5540A G8179K C11916T C14408T C18998T C19145T G19891T A23403G G25563T A27887W G29540A

EPI_ISL_486363
 2020-05-21 2020-07-10
 United States hCoV-19/USA/CA-CZB-2141/2020
 ATTAA1- C241T C1059T C3037T C10605T C11916T C14408T C18998T C19145T A23122R A23403G G25563T G29540A

EPI_ISL_486365
 2020-05-21 2020-07-10
 United States hCoV-19/USA/CA-CZB-2148/2020
 ATTAA1- A30R C241T C1059T C3037T C11916T C14408T T17619C C18998T C19145T A23403G G25563T G29540A

EPI_ISL_487524
 2020-05-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B5C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7165T C14408T C17119M T22308C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487551
 2020-05-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B4E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A T21973C G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487587
 2020-05-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B53C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T C9365T G10097A C13372T C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487596
 2020-05-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B52D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T C9365T G10097A G10334S C13372T C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487623
 2020-05-21 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B6EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11095T C14408T T19839C A23403G C26058T C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488838
 2020-05-21 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A1D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488862
 2020-05-21 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A1B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2005T C3037T C14408T A23403G G27459K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491988
 2020-05-21 2020-07-18
 Oman hCoV-19/Oman/205037858/2020
 ATTAAAGGTTTAT1- A14G TTCCCAGG17- C241T C3037T A4954G G10265A G11557T C14408T C16260T C16293T A23403G G25494T G25816C C27874T GGG28881AAC C28905T C29555T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_491989
 2020-05-21 2020-07-18
 Oman hCoV-19/Oman/205038017/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C4071T C4655T C11195T C14408T A23403G G28580T GGG28881AAC AGG29860TCA GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_491990
 2020-05-21 2020-07-18
 Oman hCoV-19/Oman/205038033/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A4954G G10265A G11557T C14408T C16260T C16293T A23403G G25494T G25816C C27874T GGG28881AAC C28905T C29555T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860C

EPI_ISL_491991
 2020-05-21 2020-07-18
 Oman hCoV-19/Oman/205038035/2020
 AT1GC AAG5- TT10CA A14C C16A TCCCAGG18CATTGCC C241T C3037T A4954G G10265A G11557T C14408T C16260T C16293T A23403G G25494T G25816C C27874T GGG28881AAC C28905T C29555T AG29860- AG29863CA TG29867CT A29872C AAAA29875TTGG AAAAAAAAAAAAAAAAAAAAAAA29881TT

EPI_ISL_491992
 2020-05-21 2020-07-18
 Oman hCoV-19/Oman/205038041/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T A4954G G10265A G11557T C14408T C16260T C16293T A23403G G25494T G25816C C27874T GGG28881AAC C28905T C29555T G29862C AA29865TG ACAAAAAAAAAAAAAAAAA29869- A29888T A29891C AA29893TT AAA29896GGG AA29900GG A29903C

EPI_ISL_491994
 2020-05-21 2020-07-18
 Oman hCoV-19/Oman/205038170/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G1944A C3037T G10265A C14408T C16293T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_492452
 2020-05-21 2020-07-20
 United Kingdom hCoV-19/England/NORT-29AAFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T26715K G26720R T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492454
 2020-05-21 2020-07-20
 United Kingdom hCoV-19/England/NORT-29AB71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T26715K G26720R G27000T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492472
 2020-05-21 2020-07-20
 United Kingdom hCoV-19/England/NORT-29AB80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493455
 2020-05-21 2020-07-21
 United Kingdom hCoV-19/England/NORT-285AF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T C3768T C14408T G22093A A23403G C25844T C27577T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493705
 2020-05-21 2020-07-21
 United Kingdom hCoV-19/England/SHEF-CC02E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4550G G7675T T8908C C14408T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493739
 2020-05-21 2020-07-21
 United Kingdom hCoV-19/England/SHEF-D33D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493951
 2020-05-21 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5144T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493952
 2020-05-21 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494228
 2020-05-21 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C2065T C3037T G4207T T9485C C10376T C14408T G18583T A21515G A23403G G23868T G24368T G25563T G27390C G29773T

EPI_ISL_495099
 2020-05-21 2020-07-22
 United Kingdom hCoV-19/England/BRIS-1333BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495387 MT791923
 2020-05-21 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0481/2020
 ATTAA1- C241T C1059T C3037T C11916T C14408T G18898T A23403G G25249C G25563T TTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29728-

EPI_ISL_495880 MT821724
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1430/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495881 MT821563
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1431/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_495882 MT821565
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1432/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_495884 MT821707
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1434/2020
 ATTAAAG1- C241T C3037T C8802T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495889 MT821652
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1439/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495890 MT821648
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1440/2020
 ATTAAA1- C241T T1837C C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495892 MT821666
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1442/2020
 ATTAAAGGTTTAT1- C241T C3037T C3743T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495893 MT821738
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1443/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495894 MT821693
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1444/2020
 ATTAAAGGTTTA1- C241T T1837C C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495895 MT821682
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1445/2020
 ATTAAAGGTTTATACCT1- C241T C1204T C1441T G1747A C3037T C14408T C16289T C17745T A23403G G25429T G28086T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_495896 MT821748
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1446/2020
 ATTAAAGGTTTA1- C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495897 MT821540
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1447/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C10733T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495898 MT821768
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1448/2020
 AT1- C241T C3037T C14408T C14724T C15933T G16968T C18306T G19414C T19839C A23403G T28828C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495899 MT821700
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1449/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C18788T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495901 MT821580
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1451/2020
 AT1- C241T C1471T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495906 MT821678
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1456/2020
 ATTAAAGGTTTATAC1- C241T C1204T C1441T G1747A C3037T C14408T C16289T C17745T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495907 MT821742
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1457/2020
 ATTAAAGGTTTAT1- C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495908 MT821709
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1458/2020
 ATTAAAGGTTTATACC1- C241T C1059T C2508T C3037T C14408T G21606T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_495909 MT821739
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1459/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495912 MT821533
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1462/2020
 AT1- C241T C3037T A12410G G12832T C14408T G19384A T19632A T19839C G21800T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_495913 MT821582
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1463/2020
 ATTAAAGGTTTAT1- C241T C3037T A12410G G12832T C14408T G19384A T19632A T19839C A23403G C26873T GGG28881AAC C29200T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495914 MT821735
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1464/2020
 ATTAAAGGTTTA1- C241T C1059T C2508T C3037T C14408T G15181A G18905A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495915 MT821726
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1465/2020
 AT1- C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495916 MT821531
 2020-05-21 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1466/2020
 AT1- C241T C3037T C4524T A5538T C14408T G16813A T21802C A23403G T25783C C26022T C27059T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495918 MT834052
 2020-05-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1492/2020
 AT1- C241T T2454C C3037T C14408T C15933T G16968T G19009T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_495923 MT834138
 2020-05-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1497/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAA29893-

EPI_ISL_495924 MT833997
 2020-05-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1498/2020
 ATT1- C241T G343T G970A C3037T C9565T C14408T C15933T C16289T G16968T T19839C A23403G C25587T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495926 MT834347
 2020-05-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1500/2020
 ATTAAAGG1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_495927 MT834227
 2020-05-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1501/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_495928 MT834151
 2020-05-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1502/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_495929 MT834247
 2020-05-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1503/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T G16377T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495930 MT834061
 2020-05-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1504/2020
 A1- C241T C3037T C5407T C13860T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_496019 MT834012
 2020-05-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1593/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G T28618A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496518
 2020-05-21 2020-07-24
 India hCoV-19/India/AFMC_5286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T A5563T C5700A C14408T A23403G T28705C GGG28881AAC G29711- G29808T

EPI_ISL_496519
 2020-05-21 2020-07-24
 India hCoV-19/India/AFMC_5304/2020
 ATTAAAGGTTTATAC1- C241T C313T C3037T C5700A C14408T A23403G T28705C GGG28881AAC G29808T T29867- A29903-

EPI_ISL_496526
 2020-05-21 2020-07-24
 India hCoV-19/India/NCCS_NR2257/2020
 ATTAAAGGT1- A26- C241T C3037T C6843T C14408T C18877T G20326A A23403G G24794T G25563T G26152T C26735T A29869-

EPI_ISL_496531
 2020-05-21 2020-07-24
 India hCoV-19/India/NCCS_NR2252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6843T C14408T C18877T G20326A A23403G G24794T G25563T G26152T C26735T T29760- T29765-

EPI_ISL_496535
 2020-05-21 2020-07-24
 India hCoV-19/India/NCCS_NR2108/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T G22289T A23403G GGG28881AAC

EPI_ISL_496538
 2020-05-21 2020-07-24
 India hCoV-19/India/AFMC_5309/2020
 AT1- C241T C313T C3037T C5700A C14408T A23403G T28705C GGG28881AAC G29808T

EPI_ISL_496539
 2020-05-21 2020-07-24
 India hCoV-19/India/AFMC_5318/2020
 AT1- C241T C313T C3037T C5700A C14408T A23403G T28705C GGG28881AAC G29808T

EPI_ISL_496567
 2020-05-21 2020-07-24
 India hCoV-19/India/NCCS_NR2086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C207T C241T C3037T C3634T A6600C G14274T C14408T C15324T A23403G T29867A

EPI_ISL_496568
 2020-05-21 2020-07-24
 India hCoV-19/India/NCCS_NR2099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C12119T C14408T C18877T G20326A G22051T A23403G C23533T G25563T G26152T C26735T A27239G C29774T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_496570
 2020-05-21 2020-07-24
 India hCoV-19/India/NCCS_NR2109/2020
 ATTAAAGGTTT1- C241T C313T C3037T C5700A C14408T A23403G G26690T G28851T GGG28881AAC G29254A A29903-

EPI_ISL_496571
 2020-05-21 2020-07-24
 India hCoV-19/India/NCCS_NR2122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C5700A A10375G C14408T A23403G C27549T GGG28881AAC

EPI_ISL_496572
 2020-05-21 2020-07-24
 India hCoV-19/India/NCCS_NR2245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C84T C241T C3037T C14408T T15254C C16393T C18877T A23403G G25563T C25886T C26735T

EPI_ISL_496573
 2020-05-21 2020-07-24
 India hCoV-19/India/NCCS_NR2246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C6843T C14408T C18877T G20326A A23403G G24794T G25563T G26152T C26735T AG29863GA AT29866-

EPI_ISL_496574
 2020-05-21 2020-07-24
 India hCoV-19/India/NCCS_NR2249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C6843T C9491T C14408T C18877T G20326A A23403G G24794T G25563T G26152T C26735T AAA29901-

EPI_ISL_496575
 2020-05-21 2020-07-24
 India hCoV-19/India/NCCS_NR2254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C6843T C14408T C18877T G20326A A23403G G24794T G25563T G26152T C26735T

EPI_ISL_496576
 2020-05-21 2020-07-24
 India hCoV-19/India/NCCS_NR2260/2020
 ATTAAAGG1- C241T C3037T T6826C C14408T G16078A C18877T C22444T G23311T A23403G G25563T C26735T C28854T TG29867- AC29869GA

EPI_ISL_496602
 2020-05-21 2020-07-24
 India hCoV-19/India/AFMC_5306/2020
 ATTAAAGGTTTATA1- C16T T18C C20T G23A C241T C313T C3037T C5700A C14408T A23403G T28705C GGG28881AAC G29808T

EPI_ISL_496916
 2020-05-21 2020-07-24
 United States hCoV-19/USA/MN-MDH-1330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T T6976C C11919T C14408T A23403G G25563T A26183G C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_497873
 2020-05-21 2020-07-25
 India hCoV-19/India/NCCS_NR2255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6843T C14408T C18877T G20326A A23403G A23998- G24794T G25563T G26152T C26735T G29868T

EPI_ISL_497874
 2020-05-21 2020-07-25
 India hCoV-19/India/NCCS_NR2097/2020
 ATTAAAGGTTTAT1- A14C CT16TG C241T C3037T C12119- C14408T C18877T G20326A G22051T A23403G C23533T G25563T G26152T C26735T A27239G C29774T

EPI_ISL_500001
 2020-05-21 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A2659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G15438T T18144C A20268G A23403G A23526G C27610T C29870A

EPI_ISL_500957
 2020-05-21 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106E96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501010
 2020-05-21 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106EF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501015
 2020-05-21 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106EC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1191T C1420T C3037T C7279T A13512C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501032
 2020-05-21 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106E78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A25448G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501041
 2020-05-21 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106EB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508169
 2020-05-21 2020-08-04
 India hCoV-19/India/AR21/2020
 C241T C3037T C3634T C6723T C14408T C15277T C15324T C21627T A23403G C23655T C26447T G26730T C28311T G29868A

EPI_ISL_508171
 2020-05-21 2020-08-04
 India hCoV-19/India/AR23/2020
 ATTAAAGGT1- A235T C241T C829T C3037T G8371T C14408T A23403G GGG28881AAC G29868A

EPI_ISL_508194
 2020-05-21 2020-08-04
 India hCoV-19/India/AR58/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C3634T A13660C C14408T C15324T A23403G C26447T G26730T G29868A

EPI_ISL_508429
 2020-05-21 2020-08-04
 India hCoV-19/India/MW25/2020
 C241T C313T C3037T C5700A C14408T C15368T A23403G G27240T GGG28881AAC G29868A

EPI_ISL_508430
 2020-05-21 2020-08-04
 India hCoV-19/India/MW26/2020
 ATTAAAGGTTTATACCTT1- G23T A26- C241T C313T C1419T C3037T C5700A C14408T A23403G GGG28881AAC G29868A

EPI_ISL_509841 MT846525
 2020-05-21 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4321T C14408T C15763T C16260T C19813T A23403G G25088T G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510628
 2020-05-21 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2292/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G22335T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_510629
 2020-05-21 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2293/2020
 C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T A28070C G29179T G29315T G29779T

EPI_ISL_510630
 2020-05-21 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T G29864A

EPI_ISL_510634
 2020-05-21 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2298/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16375T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_511810
 2020-05-21 2020-08-08
 United States hCoV-19/USA/CA-IGI-0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G944A C1059T C3037T C14408T T15261C C19550T A23403G G25563T A28305G

EPI_ISL_511843
 2020-05-21 2020-08-08
 United States hCoV-19/USA/CA-IGI-0089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1420T C3037T C7765T C14408T A20755C A23403G G25563T G26199T G27754T

EPI_ISL_512160
 2020-05-21 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- A235T C241T C1059T C3037T C9811T C14408T G16647T A23403G G25555T G25563T C29784T

EPI_ISL_512167
 2020-05-21 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1756/2020
 C241T C3037T C14408T A20268G A23403G T24076C C28854T

EPI_ISL_512171
 2020-05-21 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1968T C3037T C7843T C14408T T14565C C19185T C19554T A20268G A23403G G25249T C28854T

EPI_ISL_513709 MW035947
 2020-05-21 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- G219K C241T C3037T C14408T G21255C C22211T C22388T G22661T A23403G GGG28881AAC G28960T

EPI_ISL_513832 MW036081
 2020-05-21 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2408/2020
 ATTAAA1- T11Y C66M C241T C1059T C3037T C3602T C14408T C16762T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513833 MW036021
 2020-05-21 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2409/2020
 AT1- C241T C3037T C13994T C14408T G18106T C21859T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_513848 MW036038
 2020-05-21 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2429/2020
 ATTAAAGGTTTA1- T76W C241T C313M C1059T C3037T C4002T C14408T G17338T G20709T A21080C G22104T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513850 MW036084
 2020-05-21 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2431/2020
 ATTA1- C241T C1059T C3037T C4002T G14316K C14408T G17338T G20709T A21080C A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_513863 MW035987
 2020-05-21 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2455/2020
 ATTAAAGGTTTATACCTTCCC1- C241W C1059T C3037T C14408T C20320Y A23403G G25563T G25606T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_513865
 2020-05-21 2020-08-13
 United States hCoV-19/USA/CA-CZB-2459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCC1- C1059T C1420T C3037T C7765T C11379T C14408T A20755C A21457G A23403G G25563T G26199T G27754T

EPI_ISL_513866
 2020-05-21 2020-08-13
 United States hCoV-19/USA/CA-CZB-2460/2020
 ATTAAA1- C241T C1059T C1420T C3037T G7295R C7765T C14408T A20755C A23403G G25563T G26199T G27754T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513867
 2020-05-21 2020-08-13
 United States hCoV-19/USA/CA-CZB-2462/2020
 AT1- C241T C281M C1059T C1420T C3037T C7765T C14408T A20755C G21249K C21254Y A23403G G25563T G26199T G27754T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514157 MT890290
 2020-05-21 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0811/2020
 ATTAAAGGTT1- C241T C1059T C3037T T4351C C10319T C14408T C16289T A23403G G25563T G26031T C27964T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518825
 2020-05-21 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-15133/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C11824T C14408T T15255C C16293T A23403G C25452T C25571T GGG28881AAC T29848A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_518826
 2020-05-21 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-15173/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T G10265A C14408T C16293T A23403G A25747G GGG28881AAC T29848A A29850T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518827
 2020-05-21 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-15176/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T C20132T A23403G C25452T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852TA

EPI_ISL_518828
 2020-05-21 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-15181/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T G22801C A23403G C23439T G25445T GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_518829
 2020-05-21 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-15345/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T C17145T A23403G C23595T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_518830
 2020-05-21 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-15398/2020
 TTA2GCC AGG6TCA C241T C3037T G10265A C14408T C16293T A23403G A25747G TTGTGTG26359AAAGAAA TACTGCTGCAATATTGT26368CG GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_518831
 2020-05-21 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-15411/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G10265A C14408T G15907A C16293T G17679T C20132T A23403G C25452T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_522797 MT929094
 2020-05-21 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0930/2020
 ATTAAAGGTTTATACC1- C241T C3037T T5834C C8664A G8851A G11365T C12153T C14408T A23403G A25505C GGG28881AAC

EPI_ISL_522798 MT929095
 2020-05-21 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0933/2020
 AT1- C241T C619T C1059T C1385T C3037T G11389T C14408T A14912G A18239G A23403G G25563T C26936T C29870A

EPI_ISL_522799 MT929096
 2020-05-21 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C9988T C14408T G15982T A23403G G25563T C29870A

EPI_ISL_522800 MT929097
 2020-05-21 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T A10510G C14408T C16260T A23403G G25563T G26690T C28821A

EPI_ISL_522802 MT929099
 2020-05-21 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0938/2020
 ATTA1- C241T C1059T C3037T C4554A C14408T C16260T CG21304AA G21786T A23403G T24079C C25487T G25563T A25847T G26690T C28821A C29870M

EPI_ISL_522804 MT929101
 2020-05-21 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A20741G A23403G G25563T C27549T C29870A

EPI_ISL_522805
 2020-05-21 2020-08-26
 United States hCoV-19/USA/VA-DCLS-0948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C6781T C14408T A23403G G25563T G26173T T27447C C27945T G29868R C29870A

EPI_ISL_523162
 2020-05-21 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G GTTAATCCAGTA26158- GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524086
 2020-05-21 2020-08-27
 United States hCoV-19/USA/UT-08287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6512C C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524102
 2020-05-21 2020-08-27
 United States hCoV-19/USA/UT-08306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T G4300T G5739A C8139T C14408T A23403G G25563T A25864G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524105
 2020-05-21 2020-08-27
 United States hCoV-19/USA/UT-08309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C6629T C11379T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524231
 2020-05-21 2020-08-27
 United States hCoV-19/USA/UT-08459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C442T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524250
 2020-05-21 2020-08-27
 United States hCoV-19/USA/UT-08481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T A5269G C6541T C12774T C14408T A22320G G22349A A23403G G25244T G25563T C27964T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524257
 2020-05-21 2020-08-27
 United States hCoV-19/USA/UT-08489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4090T C6781T C8078T A14348G C14408T A23403G T29710A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524362
 2020-05-21 2020-08-28
 United States hCoV-19/USA/UT-08622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1731C C3037T C4795T A7367G T11940C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524365
 2020-05-21 2020-08-28
 United States hCoV-19/USA/UT-08627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524425
 2020-05-21 2020-08-28
 United States hCoV-19/USA/UT-08708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T G4300T G5739A C8139T C14408T A23403G G25563T A25864G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524774
 2020-05-21 2020-08-28
 United States hCoV-19/USA/UT-08717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A C19145T A22320G A23403G G25563T C25854T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525340
 2020-05-21 2020-08-29
 United States hCoV-19/USA/UT-UPHL-04473/2020
 A1- T490A G521T C3177T C6040T C8655T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_525427
 2020-05-21 2020-08-29
 Oman hCoV-19/Oman/RESP-20-B-15491/2020
 ATTAA1GACGC G7T TACCT13- T18C C20T AG22CA C241T C3037T G10265A C14408T G15907A C16293T G17679T C20132T A23403G C25452T GGG28881AAC GAG29862ATTGT A29866C ACAAA29869TTTTG A29876G A29879C A29884T AAA29886GGC A29890T AAAAAAAAAAAA29892C

EPI_ISL_527574 MT958206
 2020-05-21 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C13035T C14408T C21742T A23403G G24368T G25563T T29418C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_527708
 2020-05-21 2020-09-04
 United States hCoV-19/USA/MN-CDC-6361/2020
 C241T C1059T C3037T G11083T G11113A C12225T C14408T A23403G G25437T C25516T G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527709
 2020-05-21 2020-09-04
 United States hCoV-19/USA/MN-CDC-6364/2020
 C241T C1059T C3037T G7405T G11083T G11113A C12225T C14408T A23403G G25437T C25516T G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528790
 2020-05-21 2020-09-09
 United Kingdom hCoV-19/England/BHRT-24B3925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5413A G11230K C14408T G21974T C23230T A23403G G25687T G25879T GGG28881AAC A29403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530103
 2020-05-21 2020-09-10
 Spain hCoV-19/Spain/MD-R53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3961T C8782T T9477A C14805T C19269T T24491C C25782T G25979T C26681T T28144C C28657T C28863T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530183 MT997705
 2020-05-21 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C874T C1059T C1812T T2187G C3037T C6651T C10319T A11822G C13665T C14408T A23403G G25563T C27964T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_530184 MT997706
 2020-05-21 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1588/2020
 AT1-C C241T C1059T C3037T C12068T C14408T G21157A C21707T A23403G G25563T C25976A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535346 MT997766
 2020-05-21 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-2043/2020
 C241T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_537535
 2020-05-21 2020-09-16
 United States hCoV-19/USA/CA-UCLA-23/2020
 ATTAAAGGTTTATA1- C241T C3037T C11758T T14313C C14408T C16386T C20762T A23403G C25587T GGG28881AAC GATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29751-

EPI_ISL_539539
 2020-05-21 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2012572/2020
 C241T C3037T G7988A C14408T A23403G C27297T GGG28881AAC

EPI_ISL_539540
 2020-05-21 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2012573/2020
 C241T C3037T C8814T C14408T A23403G C27297T GGG28881AAC

EPI_ISL_539832 MW020069
 2020-05-21 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1638/2020
 ATTAAA1- C241T C1059T C3037T A5309G C8078T C14408T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_539833 MW020070
 2020-05-21 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1639/2020
 ATTA1- C241T T1455C C3037T C14408T C16830T A21137G C23127T A23403G G29179T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_539834 MW020071
 2020-05-21 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C745T C1059T C1314T C3037T C6196T C14408T A23403G G25563T A27821G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539835 MW020072
 2020-05-21 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C3037T C14408T A23403G G25437T G25563T A27821G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_539836 MW020073
 2020-05-21 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T2882C C3037T A5309G C14408T T22478C A23403G G25563T T27384C C29065A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_545117
 2020-05-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-2094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1911T C3037T C10319T C14408T T17137C A23403G G25563T C25584T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545135
 2020-05-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-2129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C13297T C14408T A17013T A23403G G25563T C26600T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545136
 2020-05-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-2131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545139
 2020-05-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-2136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T T20037C A23403G G25563T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545147
 2020-05-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-2153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545163
 2020-05-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-2175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9962T C10319T C12085T C14408T C20698T A23403G G25563T C27847T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545164
 2020-05-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-2177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G C25688T C28471T G29422A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545170
 2020-05-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-2186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545173
 2020-05-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-2195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T C10319T C14408T A23403G C23758T G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545185
 2020-05-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-2212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545205
 2020-05-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-2252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10138T C10188T C14408T A23403G T23722C C23895T G24197T T24982C C25207T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559375
 2020-05-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A229D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18803T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559382
 2020-05-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A21FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559397
 2020-05-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A235E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18803T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559403
 2020-05-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A22AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T C14676T A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559429
 2020-05-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A25FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3103C C5893T T6430C C11200T C14408T A23403G G24368T G25563T G27183T A28117T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559719
 2020-05-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-4674DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G T12181K C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559729
 2020-05-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-4673CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G T12181K C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559737
 2020-05-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-467B7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16419C G21718T A23403G GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559739
 2020-05-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-467610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T145C C241T G1495T C3037T C14408T T14709C G16852T G20390T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560395
 2020-05-21 2020-09-29
 Lithuania hCoV-19/Lithuania/C20-05-R16/2020
 C241T C1593T C3037T C6354T G12940T C14408T T17385C G21624T A23403G C27476T GGG28881AAC AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_560397
 2020-05-21 2020-09-29
 Lithuania hCoV-19/Lithuania/C20-05-R19/2020
 C241T C1593T C3037T C14408T G21624T A23403G C27476T GGG28881AAC AAA29901-

EPI_ISL_560400
 2020-05-21 2020-09-29
 Lithuania hCoV-19/Lithuania/C20-05-R4/2020
 ATTAAAGGTT1- C241T C1593T C3037T C14408T G21624T A23403G C27476T GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_560403
 2020-05-21 2020-09-29
 Lithuania hCoV-19/Lithuania/C20-05-R8/2020
 C241T C1593T C3037T C10889T C14408T G21624T A23403G C27476T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

MT576639
 2020-05-21 2020-06-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_050/2020
 C241T A1163T C1884T C3037T C3961T C3987T C4551T G11222T C14408T A23403G GGG28881AAC

MT856678
 2020-05-21 2020-08-06
 United States SARS-CoV-2/human/USA/SC-USC-PRG493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T C3037T C14408T C16349T C17676T C20405T C21110T G23401T A23403G G25563T C27964T C28846T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT967958
 2020-05-21 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6361/2020
 C241T C1059T C3037T G11083T G11113A C12225T C14408T A23403G G25437T C25516T G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

MT967959
 2020-05-21 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6364/2020
 C241T C1059T C3037T G7405T G11083T G11113A C12225T C14408T A23403G G25437T C25516T G25563T A27821G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_456740
 2020-05-22 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2F96/2020
 C241T A1620G C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC

EPI_ISL_456743
 2020-05-22 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2FE1/2020
 C241T C3037T C14408T C18788T T19839C A23403G GGG28881AAC

EPI_ISL_456745
 2020-05-22 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B300B/2020
 C241T C3037T C6861T C14408T C17403T G18449T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_457002
 2020-05-22 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5344/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_460840
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Flevoland_17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C21811T A23403G G25563T C26408T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460841
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Flevoland_18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G C26408T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460868
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G4255T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460869
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T G8824A C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460870
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C10252T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460871
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T C11109T C13458T C14408T T22220C A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460872
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460873
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460874
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460875
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460877
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T C11109T C13458T C14408T A23403G G25456T G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460878
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T C16596T A23403G G24933T G25563T C27654T G29751T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460879
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460880
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T A3780G G5425T C8809T C11109T C14408T G14575T C15141T A23403G G25563T C29370T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460881
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460882
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460883
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T C1594T C3037T G7042T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460884
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460885
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460886
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460887
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460889
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460890
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460903
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460904
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460905
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460906
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460907
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460908
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T C11109T C13458T C14408T A23403G G25249T G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460909
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460910
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4057C C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460911
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460912
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7042T C11109T C13458T C14408T T22220C A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460913
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460914
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460915
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T A8946G C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460917
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460918
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460919
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460920
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C3241T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460921
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460988
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G GTTAATCCAGTA26158- C26408T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460989
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4300T A10323G C14408T A23403G C26408T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460990
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T T20484A C21811T A23403G G25563T C26408T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461246
 2020-05-22 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C21811T A23403G G25563T C26408T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461909
 2020-05-22 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1116DC/2020
 C241T C1862T C3037T C4002T G10097A C13536T C14408T G15202T A23403G C23731T GGG28881AAC

EPI_ISL_461910
 2020-05-22 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1116EB/2020
 C241T C2434T C3037T A12618C G13690A C14408T A23403G GGG28881AAC

EPI_ISL_461934
 2020-05-22 2020-06-06
 United Kingdom hCoV-19/England/NOTT-11188B/2020
 C241T C274T C3037T C6312A A10948G A12075G C14408T A23403G G25552T GGG28881AAC

EPI_ISL_461935
 2020-05-22 2020-06-06
 United Kingdom hCoV-19/England/NOTT-11189A/2020
 C241T C274T C3037T C6312A A10948G A12075G C14408T G19962T A20055G A23403G G25552T A26387G GGG28881AAC

EPI_ISL_461936
 2020-05-22 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1118A9/2020
 G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_461937
 2020-05-22 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1118B8/2020
 C241T C1862T C3037T C4002T G10097A C13536T C14408T G15202T A23403G C23731T GGG28881AAC

EPI_ISL_461981
 2020-05-22 2020-06-06
 United Kingdom hCoV-19/England/PORT-2CF78E/2020
 C241T C2113T C3037T C9857T C14408T C16887T C21292T A23403G A26530G

EPI_ISL_462002
 2020-05-22 2020-06-06
 United Kingdom hCoV-19/England/SHEF-C15A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20931A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_466916
 2020-05-22 2020-06-12
 Germany hCoV-19/Germany/BAV-MVP0288/2020
 C241T C3037T C3092T C14408T G15327T A23403G G25855T G26840A C27999T

EPI_ISL_471435
 2020-05-22 2020-06-21
 Belgium hCoV-19/Belgium/ULG-10200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C14408T T15225C C15928T C17690T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_472922
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16035F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T8944C C14408T C14741T A23403G A28294C

EPI_ISL_472952
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1605C2/2020
 C241T A489G C3037T T5465C G6387A C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC

EPI_ISL_472965
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1606CF/2020
 ATTAAAGGTTT1- C241T C3037T C3551T T5573Y C6380T C7420T G11801A C14408T G17592K T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_472979
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1607F9/2020
 C241T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_472980
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160805/2020
 ATT1- C241T C3037T T8944C C14408T C14741T A23403G A28294M

EPI_ISL_473005
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160A3C/2020
 ATTAA1- C241T G419A C829T C1059T C3037T G3994A G11670A C14408T C18508T A23403G G25563T G27415A G28371T

EPI_ISL_473010
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160AB4/2020
 C241T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_473027
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160BFD/2020
 C241T C3037T C3551T T5573Y C6380T C7420T G11801A C14408T T19839C T23042Y A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_473045
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160D42/2020
 C241T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_473046
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160D60/2020
 C241T C3037T G8303R C14408T C14741T C21365Y C22997T A23403G T24923C G25459T C26404Y

EPI_ISL_473349
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F8FB/2020
 C241T C3037T G10097A C10202T C14408T A23403G C23731T C27538A G28580T G28803A GGG28881AAC

EPI_ISL_473350
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F916/2020
 C241T C3037T C3177T G3932A G10097A C14408T G17144A C22713T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_473351
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F925/2020
 C241T C3037T C6428T G9623T T9625C C14408T A23403G GGG28881AAC C29218T C29364T TACGATCGAGTGTACAGTGAACAATGC29748-

EPI_ISL_473352
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F934/2020
 C241T C3037T G3932A G10097A C14408T G17144A A23403G C23731T G28580T GGG28881AAC

EPI_ISL_473750
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G C6896T -11075TTT G11083T C11344T T13030C C14805T T17247C T21033C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473931
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6251/2020
 C241T G1590T C3037T C10798A C13862T C14408T A23403G G24998C T25580C CTA28093- C28836T C29640T

EPI_ISL_475389
 2020-05-22 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C5E67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7162T T8609G C12455T C14408T C16289T G18756T A23403G G25429T C25708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_476029
 2020-05-22 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20892/2020
 C241T C3037T C9474T C14408T C16596T C17766T A23403G C25665Y G28325T

EPI_ISL_476136
 2020-05-22 2020-06-25
 Sweden hCoV-19/Sweden/20-51636/2020
 C241T G903T C1059T C3037T C14408T A14827G G23012A A23403G G24368T G25540A G25563T G29468T

EPI_ISL_476573
 2020-05-22 2020-06-25
 Argentina hCoV-19/Argentina/Heritas_HG019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C11916T T13162C C14408T C17883T C18998T C19868T A23403G G25563T C29502T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477274
 2020-05-22 2020-06-29
 United States hCoV-19/USA/MN-MDH-1184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C3737T C14408T A23403G G25563T A26183G C28854T C29679T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_477302
 2020-05-22 2020-06-29
 United States hCoV-19/USA/MN-MDH-1213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T T22552C A23403G C23987T G25563T C25889T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_477303
 2020-05-22 2020-06-29
 United States hCoV-19/USA/MN-MDH-1214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T C14408T T22552C A23403G C23987T G25563T C25889T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_478091
 2020-05-22 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1587G C6896T -11075TTT G11083T C11344T T13030C C14805T G15543T T17247C T21033C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478114
 2020-05-22 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10202T C14408T C16289T A23403G G25052R G25429T C27577T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478127
 2020-05-22 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4288T C10798A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478146
 2020-05-22 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T G14023A C14408T C15237T C21998T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478147
 2020-05-22 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T G14023A C14408T C15237T C21998T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479223
 2020-05-22 2020-06-30
 United Kingdom hCoV-19/England/SHEF-C6CB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16887T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479588
 2020-05-22 2020-06-30
 Singapore hCoV-19/Singapore/510/2020
 C6310A C6312A C8605Y G11083T C13730T A15753G C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_479589
 2020-05-22 2020-06-30
 Singapore hCoV-19/Singapore/511/2020
 C6310A C6312A G11083T C13730T C19524T C23929T C26028T C28311T C28957T AAAAAAAAAAAA29892-

EPI_ISL_480363 MT772532
 2020-05-22 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1097G C3037T A7687C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480364 MT772533
 2020-05-22 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C G2498A C3037T G3871T T3931C C4226T C5672T A7837C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480365 MT772534
 2020-05-22 2020-07-01
 United States SARS-CoV-2/human/USA/IL-UW-383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G353A A696C C3037T G3871T T3931C C14408T C18377T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480366 MT772535
 2020-05-22 2020-07-01
 United States SARS-CoV-2/human/USA/WI-UW-384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T C1059T C3037T C5183T A6313G T7579C C14408T A23403G C24897T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481126
 2020-05-22 2020-07-02
 India hCoV-19/India/ILSCV28594/2020
 C241T C3037T C8917T G9389A C14408T A21141G A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481127
 2020-05-22 2020-07-02
 India hCoV-19/India/ILSCV29181/2020
 C6312A G11083T C13730T C14937T T16713C A21792T C23929T C28311T A29282G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_484456
 2020-05-22 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C578A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7675T T8908C C14408T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486352 MT750503
 2020-05-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T T2698C C3037T C4832T C14408T C16376T C17678T A23122V A23403G C25916T A29903-

EPI_ISL_486354
 2020-05-22 2020-07-10
 United States hCoV-19/USA/CA-CZB-2127/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C18998T C19145T A23122R A23403G G25563T G29540A

EPI_ISL_486355 MT750504
 2020-05-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2128/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T G15372T C18998T C19145T A23403G G25563T C26058Y G29540A

EPI_ISL_486356 MT750505
 2020-05-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2129/2020
 A1- C241T C1059T C3037T C11916T C14408T G15372T C18998T C19145T A23403G G25563T G29540A

EPI_ISL_486357 MT750506
 2020-05-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T T2698C C3037T C4832T C14408T C16376T C17678T T20256Y A23122R A23403G C25916T

EPI_ISL_486358 MT750507
 2020-05-22 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2131/2020
 ATTAAAGGTTTATACC1- A187G C241T T2698C C3037T C4832T A7079R C14408T G14449K C16376T C17074Y C17678T C22530Y A23122V A23403G C25916T

EPI_ISL_487542
 2020-05-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B5A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T C6638T T7792C C14408T G21724T A23403G C23758T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487561
 2020-05-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B4F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A C2607T G2891A C13551A G14857T G19419A C25603T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487565
 2020-05-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B5B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11095T C14408T T19839C A23403G C26058T C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487574
 2020-05-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T C6638T T7792C C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487599
 2020-05-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B50F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C3037T C4380Y G7798T C10605Y C12786T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487619
 2020-05-22 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4780T C6638T T7792C C14408T G21724T A23403G C23758T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489142
 2020-05-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-29298E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C2306T C3037T A14061G C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489151
 2020-05-22 2020-07-14
 United Kingdom hCoV-19/England/NORT-292A30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7072Y A7669G G10097A T13216G C14408T A23403G C23731T T27935A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490762
 2020-05-22 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165AA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1589R C3037T G4504T C14408T G21624T A23403G G25429T G26730T C28076T C29247T G29474T AA29902-

EPI_ISL_491993
 2020-05-22 2020-07-18
 Oman hCoV-19/Oman/205038157/2020
 ATTAAAGGTTTATACCTTCCC1- GG23AT C241T C3037T C6701T G10265A G11083T C14408T C16293T C21575T C21742T C21846T A23403G C24863T G25429T G25816C C27874T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862A

EPI_ISL_491995
 2020-05-22 2020-07-18
 Oman hCoV-19/Oman/205038321/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G9652T G10265A C14408T C16293T A17008G A23403G G28044T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_491996
 2020-05-22 2020-07-18
 Oman hCoV-19/Oman/205038337/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T A23403G C25452T GGG28881AAC G29440T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_492198
 2020-05-22 2020-07-20
 United Kingdom hCoV-19/England/CAMB-1B396A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5497T C14408T G17964T A20268G C20270T C22295T A23403G C25318T C26022T C28341T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492199
 2020-05-22 2020-07-20
 United Kingdom hCoV-19/England/CAMB-1B39F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8722T C14408T T18609C A23403G G27996K G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492201
 2020-05-22 2020-07-20
 United Kingdom hCoV-19/England/CAMB-1B39B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8722T C14408T T18609C A23403G G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492483
 2020-05-22 2020-07-20
 United Kingdom hCoV-19/England/NORT-29ABEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493456
 2020-05-22 2020-07-21
 United Kingdom hCoV-19/England/NORT-285B79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493673
 2020-05-22 2020-07-21
 United Kingdom hCoV-19/England/SHEF-C2C9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5585A G10097A C11750T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493678
 2020-05-22 2020-07-21
 United Kingdom hCoV-19/England/SHEF-C43A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493955
 2020-05-22 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TGGTCATGTTATGGT508- T1576C C3037T C14408T G15906T A20268G A23403G C25844T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493956
 2020-05-22 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493957
 2020-05-22 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A23403G A24862G G27147C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494359
 2020-05-22 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168D4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3049C C14408T G21624T A23403G G27877T GGG28881AAC AA29902-

EPI_ISL_495416
 2020-05-22 2020-07-22
 Turkey hCoV-19/Turkey/KU-006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C2509T C3037T C13620T C14408T C14724T A23403G G24262T G27703T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_495902 MT821770
 2020-05-22 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1452/2020
 ATTAAA1- C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_495903 MT821606
 2020-05-22 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1453/2020
 AT1- C241T C1204T C1441T G1747A C3037T C14408T C16289T C17745T C22675T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495904 MT821536
 2020-05-22 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1454/2020
 AT1- C241T C3037T C14408T C15933T G16968T C18676T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_495905 MT821704
 2020-05-22 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C241T C1204T C1441T C3037T C14408T C16289T C17745T A23403G G25429T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_495911 MT821729
 2020-05-22 2020-07-23
 United States SARS-CoV-2/human/USA/WA-S1461/2020
 AT1- C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_495919 MT834127
 2020-05-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1493/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAA29895-

EPI_ISL_495920 MT834069
 2020-05-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1494/2020
 ATTAAAGGTTTA1- C241T C1060T C3037T C14408T T19839C A23403G C28256T G28314A GGG28881AAC G29690T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495921 MT834155
 2020-05-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1495/2020
 A1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAA29894-

EPI_ISL_495922 MT834163
 2020-05-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1496/2020
 AT1- C241T C3037T C14408T T19839C A23403G C23422T C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495931 MT834062
 2020-05-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1505/2020
 A1- C241T A2127G C3037T C14408T C15933T G16968T T19839C A23403G C27911T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_495932 MT834213
 2020-05-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1506/2020
 ATTAAAGGTTTAT1- C3311A C8782T G17671T C17747T A17858G C18060T A18579C C24026T C24378T T28144C C29259T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495934 MT834306
 2020-05-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1508/2020
 ATTAAAGGTTTAT1- C3311A C8782T G17671T C17747T A17858G C18060T A18579C C24378T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_495935 MT834330
 2020-05-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1509/2020
 AT1- C3311A C8782T G17671T C17747T A17858G C18060T A18579C C24378T T28144C AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_495936 MT833974
 2020-05-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1510/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C C20762T A21717T A23403G C28868T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495938 MT834170
 2020-05-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1512/2020
 ATT1- C241T C3037T G4510T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495940 MT834113
 2020-05-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1514/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495944 MT834045
 2020-05-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1518/2020
 A1- C241T C3037T C5907T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_495948 MT834226
 2020-05-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1522/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496532
 2020-05-22 2020-07-24
 India hCoV-19/India/NCCS_NR2309/2020
 ATTAAAGGTTTATACCTTCCC1- AC27- C241T C3037T C6843T C14408T C18877T G20326A A23403G G24794T G25563T G26152T C26735T AAA29901-

EPI_ISL_496577
 2020-05-22 2020-07-24
 India hCoV-19/India/NCCS_NR2307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C6843T C14408T C18877T G20326A A23403G G24794T G25563T G26152T C26735T AAAAAAAA29896-

EPI_ISL_496578
 2020-05-22 2020-07-24
 India hCoV-19/India/NCCS_NR2328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C5700A C14408T C19572T A23403G G28328A GGG28881AAC C29530T A29903-

EPI_ISL_496579
 2020-05-22 2020-07-24
 India hCoV-19/India/NCCS_NR2329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C313T C3037T C5700A C14408T C19572T A23403G G28328A GGG28881AAC TGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29691-

EPI_ISL_496580
 2020-05-22 2020-07-24
 India hCoV-19/India/NCCS_NR2347/2020
 ATTAAAGGTT1- C241T C313T C3037T C5700A C14408T A23403G C26469A GGG28881AAC AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_496581
 2020-05-22 2020-07-24
 India hCoV-19/India/NCCS_NR2359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C3634T C12049T C14408T C14616T C15324T T21992C A23403G C29741T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500963
 2020-05-22 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106F0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500994
 2020-05-22 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106F1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23380T A23403G G28109T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501045
 2020-05-22 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106F39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T T16008A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501053
 2020-05-22 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106F2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C3876T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501059
 2020-05-22 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106F48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G G27798T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507962
 2020-05-22 2020-08-03
 United States hCoV-19/USA/MN-MDH-1374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T C3037T T9070C C14408T A23403G G25563T G27390A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_508159
 2020-05-22 2020-08-04
 India hCoV-19/India/AR12/2020
 ATTAAAGGTTTATAC1- C20G A22G C241T C313T C3037T C14408T A16719G C19017T G21468T A23403G GGG28881AAC G29868A

EPI_ISL_508170
 2020-05-22 2020-08-04
 India hCoV-19/India/AR22/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C84T C241T C3037T G3950T C14408T T15254C C18877T G19816T A21137G A23403G G25563T C26735T G29868A

EPI_ISL_508196
 2020-05-22 2020-08-04
 India hCoV-19/India/AR6/2020
 ATTAA1- C241T T1947C C3037T A8657G C14408T C18877T C22444T A23403G G25563T C25642T C26735T C28854T C28957T G29868A

EPI_ISL_508206
 2020-05-22 2020-08-04
 India hCoV-19/India/AR9/2020
 ATTAAAGGTTTATACCT1- C241T C313T C3037T C14408T A16719G C19017T G21468T A23403G GGG28881AAC G29868A

EPI_ISL_509842 MT846526
 2020-05-22 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T G2180A G2808A C3037T C14408T T16898C A23403G C24904T G25563T A26433G C29409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510631
 2020-05-22 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C11916T C14408T C16650T G17058T A20675T A23403G G25563T G29179T G29779T G29864T

EPI_ISL_510632
 2020-05-22 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2296/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510633
 2020-05-22 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2297/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510635
 2020-05-22 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2299/2020
 A1- C241T C1059T C3037T C8937T C14408T G16622A A23403G G24399T G25563T C27964T T29308C

EPI_ISL_510636
 2020-05-22 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2300/2020
 ATTAAAG1- T10A T490A G521T C3177T C4618A C6040T C8782T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_510637
 2020-05-22 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2301/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_510836
 2020-05-22 2020-08-07
 Sweden hCoV-19/Sweden/20-51710/2020
 C241T C1059T C3037T A6342G C14408T A23403G G24368T G25563T A28294C G28904T G29742T

EPI_ISL_510842
 2020-05-22 2020-08-07
 Sweden hCoV-19/Sweden/20-51745/2020
 C241T C1059T C3037T C9565T C9924T G14209T C14408T C15457T G15957T G19109T A23403G G24368T G25563T C29585T

EPI_ISL_510843
 2020-05-22 2020-08-07
 Sweden hCoV-19/Sweden/20-51746/2020
 C241T C1059T C3037T C7165T C14408T A23403G G24368T C25561T G25563T G26277T C26455T G29212A

EPI_ISL_511840
 2020-05-22 2020-08-08
 United States hCoV-19/USA/CA-IGI-0086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1420T C3037T C7765T T13258C C14408T C17483T A20755C A23403G G25563T G26199T G27754T

EPI_ISL_511970
 2020-05-22 2020-08-10
 United Kingdom hCoV-19/England/CAMB-1B385E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3234R C5497T C14408T G17964T A20268G C20270T C22295T A23403G C25318T C26022T G27670K C28341T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_513707 MW035976
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C222T C241T C1059T G1681T A2165G C3037T C6445T C14408T G15243T G16968T T18892Y A22001M A23403G T23962W A24576M T24835C G25563T A26993W C29546M G29711T

EPI_ISL_513708 MW035929
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2158/2020
 ATT1- C241T C379A C1059T C1170T C3037T C14408T C22224T A23403G G25563T C26013T T27318A G28703T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513710 MW035930
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2160/2020
 ATT1- C241T C379A C1059T C1170T C3037T T4579W C14408T C22224T A23403G G23587A G25563T T27318A G27514K G28703T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513711 MW035960
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2161/2020
 ATTA1- C241T C292T C3037T C14408T G21255C A23403G A28084G GGG28881AAC G28960T

EPI_ISL_513712 MW035927
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T

EPI_ISL_513713 MW035932
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2163/2020
 ATTA1- C241T C379A C1059T C1170T C3037T C14408T C22224T A23403G G25563T T27318A G28703T

EPI_ISL_513714 MW035957
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2164/2020
 AT1- C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_513715 MW035921
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C912T C1059T G1681T A2165G C3037T C14408T C23103Y A23403G C24370Y G25563T C26499Y C28751Y C28991Y G29711T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_513716 MW035953
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C222T C241T C1059T G1681T A2165G C3037T C6445T C14408T G16968T A23403G G24007K T24835C G25563T T27922Y C29259Y G29711T

EPI_ISL_513835 MW036048
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2413/2020
 AT1- C241T C3037T C8326Y C14408T C16480A G16843T C17762T A20268G A23403G A25253G G25720T C28854T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_513838 MW036023
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2417/2020
 A1- C241T C683Y C3037T C14408T G21255C A23403G G28857C GGG28881AAC G28960T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513857 MW036055
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2448/2020
 ATTA1- C241T C1059T C3037T C6927T C11916T C14408T C18998T A23403G G25563T G25947C G27703T G29540A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513858 MW036080
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCA1- C241T C3037T C14408T A23403G C25919T GGG28881AAC C29541T

EPI_ISL_513861 MW036046
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2453/2020
 ATTA1- C241T C1059T C3037T C4321Y C6927T C11916T C14408T C18998T A23403G G25563T G25947C G26779T G27703T G29030K G29540A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513862 MW036013
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7836Y C14408T A23403G C25919T GGG28881AAC C29541T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513884 MW036044
 2020-05-22 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2497/2020
 ATTAAA1- C241T C3037T C6026Y C14408T A20268G A23403G T24076C C28854T C29259T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514159 MT890292
 2020-05-22 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0813/2020
 AT1- C241T T833C C1059T C3037T C14408T G15438T C16954T A20142G A23403G G25563T G25906T C27964T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_515919
 2020-05-22 2020-08-20
 United States hCoV-19/USA/CA-CDPH027/2020
 AT1- C241T C3037T C14408T A20268G A23403G T24076C C27847T C28854T

EPI_ISL_518832
 2020-05-22 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-15719/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T C22088T A23403G C26335T GCCATCCTTACTGCGCTTCGATTGTGTGCGTACTGCTGC26338- C28057T G28346T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_518833
 2020-05-22 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-15733/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T A23403G A25448G C25452T GGG28881AAC T29848A A29850T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518834
 2020-05-22 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-15753/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T A23403G A25448G C25452T GGG28881AAC -29841C AGCTTCTTAGGAGAA29852- G29868A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_518835
 2020-05-22 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-15879/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T G10265A C14408T C16293T A23403G A25747G C27972T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856CT

EPI_ISL_518836
 2020-05-22 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-15905/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G9652T G10265A G11083T C14408T C16293T G21830T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_518837
 2020-05-22 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-16232/2020
 ATTAA1- C44T C241T C2143T C3037T G10265A C12525T C14408T C16293T T22207C A23403G G23608T GGG28881AAC G29759T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_518838
 2020-05-22 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-16236/2020
 ATTAAAGGTTTATACCTTCCCA1- G23A T25A C241T C3037T G10265A C14408T C16293T C17145T A23403G C23595T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_518839
 2020-05-22 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-16239/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T G10265A C14408T C16293T A23403G C23439T G25445T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_518840
 2020-05-22 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-16254/2020
 ATTAAAGGTTTATACCTTCC1- T25G C241T C3037T C7732T G10265A C12459T C14408T C16293T A23403G C23439T G25445T GGG28881AAC T29848A A29850T A29860T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_518841
 2020-05-22 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-16294/2020
 ATTAAAGGTTTATACCTTCCCA1- GT24TC C241T G1944A C3037T G10265A C14408T C16293T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865T

EPI_ISL_518842
 2020-05-22 2020-08-25
 Oman hCoV-19/Oman/RESP-20-B-16300/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C3037T G10265A C14408T C16293T A23403G C25452T GGG28881AAC T29848A A29850T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_522796 MT929093
 2020-05-22 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C9521T C14408T A23403G G25563T G29402T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523129
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/FL-EMC-20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G C20480T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523147
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523148
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523149
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523150
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523151
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523152
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523153
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523154
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C13458T C14408T A22206G A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523156
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C10252T C11109T C13458T C14408T A23403G G25563T C27654T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523240
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T G11083T T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523241
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T G11083T T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523376
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8408A C13059T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523377
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T TT7275GG A7750G C14408T A23403G A24862G A27674T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523530
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10349T C14408T C19170T G19509A A23403G C26313T GGG28881AAC G29628T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523694
 2020-05-22 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C17977T C26333T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_524012
 2020-05-22 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-16850V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524077
 2020-05-22 2020-08-27
 United States hCoV-19/USA/UT-08275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4946C C14408T C15352T A20268G A21917G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524228
 2020-05-22 2020-08-27
 United States hCoV-19/USA/UT-08456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C8389T G9705T G11521A T12979C C14408T A23403G G25563T C27964T G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524260
 2020-05-22 2020-08-27
 United States hCoV-19/USA/UT-08492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A A20846G A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524814
 2020-05-22 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A C19145T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524818
 2020-05-22 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G373T C442T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524850
 2020-05-22 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T G4958A C6541T C11379T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524868
 2020-05-22 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T G4958A C6541T C11379T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524995
 2020-05-22 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C1514T C3037T C6541T C9724T C11379T C14408T A22320G A23403G G25444T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526569 MT956700
 2020-05-22 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1083/2020
 ATTA1- C241T C1059T C3037T T4351C C10319T C14408T C16289T A23403G G25563T G26031T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528814
 2020-05-22 2020-09-09
 India hCoV-19/India/TG-CCMB-GC22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1348T C3037T G4354A C6573T C14408T A23403G C25528T G26730C G28001T GGG28881AAC C29732T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_530104
 2020-05-22 2020-09-10
 Spain hCoV-19/Spain/MD-R56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2005T A2430C C3037T A3133C C14408T A23403G G25595T GGG28881AAC ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530180 MT997702
 2020-05-22 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T G1186A C3037T T4033C C8986T C11916T T12925C C14408T A23403G C25413T G25563T C28674T G28857T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530181 MT997703
 2020-05-22 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T G1186A C3037T T4033C C8986T C11916T T12925C C14408T A23403G C25413T G25563T C28674T G28857T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530182 MT997704
 2020-05-22 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1586/2020
 AT1-C C241T C1059T C3037T G14008A C14408T C17676T A20450C C22227T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_534826
 2020-05-22 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2F1F/2020
 C241T C3037T C6525T C14408T T18398C C22482A A23403G T24274C G24781T C25344T GGG28881AAC AAAAAA29898-

EPI_ISL_534856
 2020-05-22 2020-09-14
 United Kingdom hCoV-19/England/OXON-B33B8/2020
 C241T C3037T C14074T C14408T G19072T C21597T A23403G C25066T GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_534896
 2020-05-22 2020-09-14
 United Kingdom hCoV-19/England/OXON-B39E3/2020
 C241T C3037T T6283C C14408T A19073C T19839C A23403G C26681T GGG28881AAC A29895R AAAAAAA29897-

EPI_ISL_534943
 2020-05-22 2020-09-14
 United Kingdom hCoV-19/England/OXON-B428D/2020
 C21T C241T C3037T C6636T C11200T C14408T G19072T A23403G GGG28881AAC AAAAA29899-

EPI_ISL_537551
 2020-05-22 2020-09-16
 United States hCoV-19/USA/CA-UCLA-25/2020
 AT1- C241T C1059T C3037T C8802T C11124T C14408T C18086T T21664C A23403G G25563T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_545113
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C344T C1601T C3037T C8499T C14408T C18060T T18231C A23403G GGG28881AAC G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545123
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T T1390G C3037T C9565T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545137
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C11095T C14408T T20037C A23403G G25563T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545138
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T20037C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545140
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7086T C9693T C9967T C14408T T15939C T22673C A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545143
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C2610T C3177T C6040T C8782T G12478A T18736C C22214G C24034T T26729C G28077C T28144C C28896G A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545146
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545153
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2697G C3037T C3784T C14408T A23403G G25563T G29227T A29542T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545157
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C300T T833C C1059T C3037T A12387G C14408T T15030C G19542A A23403G G25563T C26894T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545158
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2695T C3037T C3990T T9742C C14408T A23403G G26951T A29209T C29247T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545159
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5770T C8140T G10096A C14408T A23403G G25563T C27964T C29200T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545181
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A5011C C14408T G17658T A23403G G25563T C26224T C27434T C28893T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545183
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5806T C14408T C20474T A23403G A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545198
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T T21942C A23403G G25563T C27297T C28821A C28957T G29405C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545219
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3122T C4795A T5755C T9172C A10948G C14408T G17302T A23403G C25904T A26612T G26730T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545220
 2020-05-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-2278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548251
 2020-05-22 2020-09-25
 Sweden hCoV-19/Sweden/20-51744/2020
 C241T C313T G1843T C3037T C4633T T7099C GTT11283- G14118T C14408T C19934T A23403G GGG28881AAC

EPI_ISL_559399
 2020-05-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A2A77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7834T C14408T C16997T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559410
 2020-05-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A29A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A20826G A23207G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559412
 2020-05-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A2BFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A20826G A23207G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559457
 2020-05-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49F530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15544T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559610
 2020-05-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49F80A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12781T C14408T C23127T A23403G GGG28881AAC G28916R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559611
 2020-05-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49F3BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559631
 2020-05-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49F6A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C6629T C9803A A10786G C10833T C14408T C18687T A23403G C25844T T27811C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559720
 2020-05-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-46822A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C475T C3037T C14408T A23403G G25337T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559721
 2020-05-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-468D74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T317G G1161A C3037T C9474T C14408T C16111T A23403G C26256T C28269T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559726
 2020-05-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-467F7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10948G C14408T A23403G C27542T GGG28881AAC A29768G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559738
 2020-05-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-4691FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G3030A C3037T C11289T C14408T T14466C G21593A A23403G C27999T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560394
 2020-05-22 2020-09-29
 Lithuania hCoV-19/Lithuania/C20-05-R15/2020
 TCCC18GGGA A26- C28T C241T C3037T C5812T C8950T C14408T T19839C A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_560589
 2020-05-22 2020-09-29
 France hCoV-19/France/GE8541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C21635A A23403G G23426T C28887T C29754T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

LR877391
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0018
 

LR877393
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0019
 

LR877394
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0020
 

LR877395
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0021
 

LR877402
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0024
 

LR877405
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0035
 

LR877407
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0023
 

LR877408
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0041
 

LR877410
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0038
 

LR877412
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0037
 

LR877422
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0048
 

LR877423
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0049
 

LR877425
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0043
 

LR877426
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0046
 

LR877427
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0050
 

LR877429
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0042
 

LR877430
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0047
 

LR877431
 2020-05-22 2020-08-17
 Poland covid_hub_pl_ibch_0045
 

MW001275
 2020-05-22 2020-09-14
 United States SARS-CoV-2/human/USA/266-NP-OP/2020
 C241T C1500A C3037T A3090G A5570G G11083T C13501T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW001277
 2020-05-22 2020-09-14
 United States SARS-CoV-2/human/USA/266-NP-OP-TCE/2020
 C241T C1500A C3037T A3090G A5570G G11083T C13501T C14408T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW001280
 2020-05-22 2020-09-14
 United States SARS-CoV-2/human/USA/269-NP-OP/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A C29247T T29344C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_457003
 2020-05-23 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5345/2020
 C241T T1576C C3037T C14408T A20268G A23403G C25844T C28854T

EPI_ISL_457004
 2020-05-23 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5348/2020
 C241T C3037T C14408T A20268G A23403G T28642C C28854T

EPI_ISL_457005
 2020-05-23 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5349/2020
 C241T C1059T C1076T C3037T C9598T G9802T C10582T C14408T C17326T G19009T G22309A A23403G G25563T C26461T G27572A

EPI_ISL_457006
 2020-05-23 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5351/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_460922
 2020-05-23 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G C16308T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460992
 2020-05-23 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G G12694A C14408T T15696G A23403G C26408T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461226
 2020-05-23 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_462090 MT576689
 2020-05-23 2020-06-07
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_004/2020
 C241T A1163T A2775G C3037T C3961T C14408T A23403G G25593T A27753T C28253T GGG28881AAC G29587A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_462091 MT578017
 2020-05-23 2020-06-07
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_002/2020
 A1- G174A C241T A1163T C3037T C7390T C14408T A23403G C25916T GGG28881AAC C29686T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_462092 MT578016
 2020-05-23 2020-06-07
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_003/2020
 ATTAAAGGTTTATAC1- C241T A1163T C3037T C14408T A23403G GGG28881AAC G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_462093
 2020-05-23 2020-06-07
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_005/2020
 C241T A1163T C3037T C14408T G19348T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_462094
 2020-05-23 2020-06-07
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_006.2/2020
 C241T A1163T C3037T C3961T C4754T G7756T C14408T A23403G GGG28881AAC

EPI_ISL_462095
 2020-05-23 2020-06-07
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_009/2020
 C241T A1163T C1302T C3037T T9022C A10323G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_462096
 2020-05-23 2020-06-07
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_015/2020
 C241T A1163T A2870G C3037T A8026G C10755T C14408T C15714T A23403G C24378A GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_462097
 2020-05-23 2020-06-07
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_042/2020
 C241T A1163T A1934G C3037T C3961T G12170A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_469286 MT656010
 2020-05-23 2020-06-18
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_094/2020
 C241T A1163T C3037T C3961T A4503T C14408T A23403G GGG28881AAC

EPI_ISL_469297 MT656256
 2020-05-23 2020-06-18
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_095/2020
 C241T A1163T C1853T C3037T C3961T C14408T G14430T A23403G GGG28881AAC

EPI_ISL_469298 MT657271
 2020-05-23 2020-06-18
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_096/2020
 C241T A1163T C3037T C9223T C14408T A23403G G23608T A25615G GGG28881AAC C29754T

EPI_ISL_469299 MT656590
 2020-05-23 2020-06-18
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_100/2020
 C241T A1163T C3037T C3961T C14408T A23403G GGG28881AAC

EPI_ISL_471430
 2020-05-23 2020-06-21
 Belgium hCoV-19/Belgium/ULG-10195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T T18495C A23403G T25468C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_472102
 2020-05-23 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A0318/2020
 C241T C3037T G10097A G11906C C14408T A23403G C23731T C26198T G28580T C28720T GGG28881AAC C29421T

EPI_ISL_472107
 2020-05-23 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A03BE/2020
 C241T C3037T G10097A G11906C C14408T A23403G C23731T C26198T G28580T C28720T GGG28881AAC C29421T

EPI_ISL_472878
 2020-05-23 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15FFB9/2020
 ATTA1- C241T C3037T C14408T A23403G GGG28881AAC G29777T

EPI_ISL_472899
 2020-05-23 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160146/2020
 C241T C3037T C12076T C14408T C14741T C22550T A23403G

EPI_ISL_472947
 2020-05-23 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16052C/2020
 A1- C241T C3037T A3911G C14408T A23403G T25272C C26028T

EPI_ISL_472963
 2020-05-23 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1606A1/2020
 ATTAAAGGTTTA1- C241T C3037T T3049C C14408T G21624T A23403G GGG28881AAC

EPI_ISL_472966
 2020-05-23 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1606DE/2020
 ATTAAAGGT1- C241T C3037T C9438T C11767Y C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_472975
 2020-05-23 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160780/2020
 C241T C3037T C9438T C14408T G15243T A23403G GGG28881AAC G29777T

EPI_ISL_472998
 2020-05-23 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16096C/2020
 A1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_473002
 2020-05-23 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1609E4/2020
 ATTAA1- C241T A2699G C3037T G5629T C14408T C14741T G22199T A23403G T24923C

EPI_ISL_473033
 2020-05-23 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160C63/2020
 AT1- C241T G419A C829T C1059T C3037T G3994A G11083T G11670A C14408T C18508T A23403G G25563T G27415A G28371T

EPI_ISL_473044
 2020-05-23 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160D33/2020
 ATTA1- C241T G419A C829T C1059T C3037T G3994A G11670A C14408T C18508T A23403G G25563T G27415A G28371T

EPI_ISL_475418
 2020-05-23 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C9267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C11750T C11832T C13381T C14408T A23403G C23731T A23992T C25350T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475507
 2020-05-23 2020-06-23
 United Kingdom hCoV-19/England/SHEF-D30AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T T4714C G10097A T11104G C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477129
 2020-05-23 2020-06-28
 Bangladesh hCoV-19/Bangladesh/CHRF_0016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T A10323R C14408T TTA21991- A23403G C26776Y C26942T G28655T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477289
 2020-05-23 2020-06-29
 United States hCoV-19/USA/MN-MDH-1199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C3737T T6976C C11919T C14408T A19715G G21558A A23403G G25563T A26183G C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_477290
 2020-05-23 2020-06-29
 United States hCoV-19/USA/MN-MDH-1201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3737T C14408T G19292T A23403G G25563T A26183G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_477304
 2020-05-23 2020-06-29
 United States hCoV-19/USA/MN-MDH-1215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C10138T G14008A C14408T C17676T C22227T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_478090
 2020-05-23 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A C13862T C14408T C17012T A23403G C28836T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_479361
 2020-05-23 2020-06-30
 United Kingdom hCoV-19/Wales/PHWC-164C23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T T3049C C14408T G21255T G21624T A23403G GGG28881AAC

EPI_ISL_479543
 2020-05-23 2020-06-30
 India hCoV-19/India/NIV-40837/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T A1677G C3037T C5700A C6813T C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479590
 2020-05-23 2020-06-30
 Singapore hCoV-19/Singapore/512/2020
 T108W C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_479591
 2020-05-23 2020-06-30
 Singapore hCoV-19/Singapore/513/2020
 G410T T1501C C5548T C6310A C6312A G11083T C13730T C19524T C21614T C23185T C23929T C24863T C28311T AAAAAAAAAAAA29892-

EPI_ISL_480367 MT772536
 2020-05-23 2020-07-01
 United States SARS-CoV-2/human/USA/IL-UW-385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12525T C14408T C16260T G21604T A23403G G25563T C25728T G28378T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481128
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV29215/2020
 C241T C3037T C14408T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481129
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV29457/2020
 C241T C3037T A7558G C8917T G9389A C14408T A23403G G25444T G27382T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_481130
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV29666/2020
 C241T C3037T C3634T C5575T C14408T C15324T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_481131
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV29958/2020
 A2705G A3603G C8782T G14500T C21721T G22468T C24358A T27222C T28144C G28878A TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_481132
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV29959/2020
 C241T G2164T C2836T C3037T G8368A C14408T C18877T C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481133
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV29960/2020
 C241T G2164T C2836T C3037T G8368A C14408T C18877T C22444T A23403G G25563T C26735T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_481135
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV29962/2020
 C241T G2164T C2836T C3037T G8368A C14408T C18877T C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481136
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV29971/2020
 A2705G C8782T G14500T G22468T C24358A T27222C T28144C G28878A G29742A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_481137
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV29997/2020
 C241T C313T C3037T T3442C C5700A C14408T C17339T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481138
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV30115/2020
 C241T C313T C3037T C5700A C9430T C13551T C14408T A23403G G28371T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481139
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV30140/2020
 C241T C2942T C3037T C3634T G11083T C14408T C15324T G21255T A23403G T26171C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481140
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV30141/2020
 C241T C3037T C3634T G11083T C14408T C15324T C18261T A23403G C26873T C28422T CAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29686-

EPI_ISL_481141
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV30163/2020
 C241T C3037T C3543T C3634T G7960T C14408T C15324T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481142
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV30167/2020
 C241T C313T G1325A C3037T C5700A C14408T A23403G G25563C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_481143
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV30220/2020
 C241T C3037T C3543T C3634T G7960T C14408T C15324T A23403G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_481144
 2020-05-23 2020-07-02
 India hCoV-19/India/ILSCV30221/2020
 C241T C3037T C3543T C3634T G7960T C14408T C15324T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481241
 2020-05-23 2020-07-02
 United States hCoV-19/USA/MN-MDH-1200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T G3549T C3737T T6976C T9508C C11919T C14408T A23403G G25563T A26183G C28854T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_482591
 2020-05-23 2020-07-04
 India hCoV-19/india/NCDC4462_CSIR-IGIB/2020
 C241Y T1947Y C3037T T8022K A8026W C13730Y C14408Y G17331K C18877Y C22444T A23403G G25563K C26735Y C28139T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482611
 2020-05-23 2020-07-04
 India hCoV-19/india/NCDC5723_CSIR-IGIB/2020
 ATTAAAGG1- C241Y C842M G2081K C2094Y C3037Y C6310M C6312M C13730Y C14408Y C15509M T15513W C18877Y T19988W T21886Y A23403R C23929Y AG24389MS G25266K G25563K C26735Y C28311Y C28854Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482612
 2020-05-23 2020-07-04
 India hCoV-19/india/NCDC5725_CSIR-IGIB/2020
 C241T T1947Y C3037T C13730Y C14408Y C18877T A23403G AG24389MS GT25555KK G25563K C26735T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486360 MT750509
 2020-05-23 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-2134/2020
 ATTA1- C241T C1059T C3037T T3877K C11916T C14408T C18998T C19145T A23403G G25563T G29540A C29640Y

EPI_ISL_487618
 2020-05-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G27798K G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487622
 2020-05-23 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B4C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490090
 2020-05-23 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC80031/2020
 ATTAAAGGTTTAT1- C6312A G11083T C13329T C13730T C20823T C23929T C26607T C28311T A29086T C29218T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_490091
 2020-05-23 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC80036/2020
 ATTA1- A5C GT8CA T11C T13C C16A C6312A G11083T C13329T C13730T C20823T C23929T C26607T C28311T A29086T C29218T A29874G AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_490092
 2020-05-23 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC80066/2020
 ATTAAAGGTTTAT1- C6312A G11083T C13329T C13730T C20823T C23929T C26607T C28311T A29086T C29218T TGACAAAAAAAAAAAAAAAAAAAAAAAA29867C A29898C

EPI_ISL_490093
 2020-05-23 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC80107/2020
 ATTAAAGGTTTAT1- C6312A G11083- C13329T C13730T C20823T C23929T C26607T C28311T A29086T C29218T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_490094
 2020-05-23 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC80109/2020
 ATTAAAGGTTTAT1- C6312A G11083T C13329T C13730T G20002T C20823T C23929T C26607T C28311T A29086T C29218T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_490095
 2020-05-23 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC80558/2020
 ATTAAAGG1- C401T C6312A G11083T C13329T C13730T C20823T C23929T C26607T C28311T A29086T C29218T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_490096
 2020-05-23 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC81523/2020
 ATTAAAGGTTTAT1- C401T C6312A G11083T C13329T C13730T C14585T C20823T C23929T C26607T C28311T A29086T C29218T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_490097
 2020-05-23 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC81528/2020
 A1T TA3CTTGGGTGATGGG GG7CA T11C -17CAAAACCTCATCATTAGGCAATA C6312A G11083T C13329T C13730T C20823T C23929T C26607T C28311T A29086T C29218T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_490098
 2020-05-23 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC81849/2020
 ATTAAAGGTTTAT1- C6312A G11083T C13329T C13730T C20823T C23929T C26607T C28311T A29086T C29218T G29864A T29867G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869C

EPI_ISL_490099
 2020-05-23 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC99023/2020
 ATTAAAGGTTT1- C6312A G11083T C13329T C13730T C20823T C23929T G26109T A26530C C26607T C28311T A29086T C29218T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_490100
 2020-05-23 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC99045/2020
 ATTAAAGGTTTAT1- C6312A G11083T C13329T C13730T C20823T C23929T C26607T C28311T A29086T C29218T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495943 MT834232
 2020-05-23 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1517/2020
 AT1- C241T C1059T C1063T C3037T C14408T G16912T A23403G G25563T T28678C G29553A AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_495950 MT834282
 2020-05-23 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1524/2020
 ATT1- C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_495951 MT834219
 2020-05-23 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1525/2020
 AT1- C241T C3037T C6573T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495952 MT834156
 2020-05-23 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1526/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A21717T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496520
 2020-05-23 2020-07-24
 India hCoV-19/India/AFMC_5473/2020
 ATTAAAGGTTTATACC1- C21T C190T C5512T C6312A C6385T G11083T C13730T A19676G C23929T T27810C C28311T G29692- TG29867- AC29869GA

EPI_ISL_496529
 2020-05-23 2020-07-24
 India hCoV-19/India/AFMC_5458/2020
 ATTAAAGGT1- A12T AC27- A29C C190T T631C C5512T C6312A C6385T G11083T G12014T C13730T A19676G C23929T T27810C C28311T GAC29868A

EPI_ISL_500986
 2020-05-23 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106D20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501025
 2020-05-23 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106D3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10202T C14408T C15324T T18495C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501046
 2020-05-23 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106D11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC G29692K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508165
 2020-05-23 2020-08-04
 India hCoV-19/India/AR18/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1349A C3037T C3397T C3634T C4158T C6198A G7761A C10039T C11005G C14408T C15324T A18399G G21778A A22459T A23403G G29868A

EPI_ISL_508189
 2020-05-23 2020-08-04
 India hCoV-19/India/AR45/2020
 ATTAAAGGTTTATACCT1- A6081G C6312A C8655T G11083T C13684T C13730T A19443G A23592G C23929T C24334T TTA26159- C27847T C28311T G29868A

EPI_ISL_508431
 2020-05-23 2020-08-04
 India hCoV-19/India/MW28/2020
 ATTAAAGGTTTATACCTTCC1- C241T C313T C3037T C5700A T12965C C14408T C21997T A23403G C24382T G25340T GGG28881AAC G29868A

EPI_ISL_508432
 2020-05-23 2020-08-04
 India hCoV-19/India/MW29/2020
 ATTAAAGGTTTATACCTT1- G23T C241T C313T C3037T C5700A T12965C C14408T C21997T A23403G C24382T G25340T GGG28881AAC G29868A

EPI_ISL_509132
 2020-05-23 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T G18937T G19677A A23403G C24466T C25466T G25563T T25851C G26951T G28027T G29742T

EPI_ISL_509478 MT827240
 2020-05-23 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0074/2020
 ATTAAA1- C241T C775T C1059T C3037T C14408T A23403G G25563T C27923T G28975T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_509843 MT846527
 2020-05-23 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2892T C3037T C12076T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510639
 2020-05-23 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2303/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510640
 2020-05-23 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2304/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T C22498T A23403G G25563T G27361T G29179T G29779T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_510810
 2020-05-23 2020-08-07
 Sweden hCoV-19/Sweden/20-08902/2020
 C241T C1059T G2885A C3037T G3485A C14408T G22021T A23403G G24368T G25563T C28603T

EPI_ISL_510811
 2020-05-23 2020-08-07
 Sweden hCoV-19/Sweden/20-08904/2020
 C241T C1059T C1342T C3037T C5986T C7165T C14408T C17004T G17325T A23403G G24368T G25563T

EPI_ISL_510813
 2020-05-23 2020-08-07
 Sweden hCoV-19/Sweden/20-08906/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C25614T T28128C

EPI_ISL_510834
 2020-05-23 2020-08-07
 Sweden hCoV-19/Sweden/20-51697/2020
 C241T C1059T C3037T C14408T C16675T A23403G G25563T A25864G G25922T C26010T T28082C C28887T G29468T

EPI_ISL_510835
 2020-05-23 2020-08-07
 Sweden hCoV-19/Sweden/20-51698/2020
 C241T C3037T C3784T C7169T T12142C C14408T A23403G C24023T T28693C GGG28881AAC

EPI_ISL_513630
 2020-05-23 2020-08-13
 Democratic Republic of the Congo hCoV-19/DRC/10733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C884T G1085T C3037T A3258G C14408T C15324T A23403G C23613T C25587A AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_513717 MW035922
 2020-05-23 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2167/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2700T C3037T C14408T T15669C A20268G A23403G C29466T G29734C

EPI_ISL_515090 MT890210
 2020-05-23 2020-08-15
 Ghana SARS-CoV-2/human/GHA/35012_S17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C745T C3037T A5401G C14408T A23403G G25217T G28077K GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_520705
 2020-05-23 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290294240/2020
 C241T C3037T C14408T T19284C G21468T A23403G C25463T C27879T GGG28881AAC

EPI_ISL_522833 MT843294
 2020-05-23 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T A6613G C14408T C15540T A23403G G25563T G26589A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_523382
 2020-05-23 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C1059T A1565G T3011C C3037T G11335T C14408T G19542T C21575T A23403G G25471C G25563T T25953C T27815C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523531
 2020-05-23 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5259T C14408T C19170T G19509A A23403G C26313T GGG28881AAC G29628T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524813
 2020-05-23 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T T4120C C14408T C16260T C22329T A23403G G25563T C28821A C29718- CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_524821
 2020-05-23 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3518T C13536T C14408T A23403G A27359G T29672C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524834
 2020-05-23 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1221T C2939T C3037T T11698C C14408T C17274T A23403G C23934A G26211T C26942T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524851
 2020-05-23 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T G4300T G5739A C8139T C14119T C14408T A23403G G25563T A25864G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525027
 2020-05-23 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525131
 2020-05-23 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T A1236G C1514T C3037T C6541T C11379T C14408T A22320G A23403G G25444T G25563T C27964T G29742T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525148
 2020-05-23 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C14408T G15908A A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525149
 2020-05-23 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C14408T G15908A G18318T C19145T A22320G A23403G G25563T C26022T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525186
 2020-05-23 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1221T C2939T C3037T A5268G T11698C C14408T C17274T A23403G C23934A G26211T C26942T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526571 MT956702
 2020-05-23 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1085/2020
 ATTA1- C241T C3037T C14408T C18647T A23403G C25916T T27299C GGG28881AAC T29148C C29769T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527736
 2020-05-23 2020-09-04
 United States hCoV-19/USA/MN-CDC-6597/2020
 C241T C1059T C3037T T9070C C14408T A23403G G25563T G27390A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528816
 2020-05-23 2020-09-09
 India hCoV-19/India/TG-CCMB-GC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G2890A C3037T G4354A C6573T C14408T G23120T A23403G C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528821
 2020-05-23 2020-09-09
 India hCoV-19/India/TG-CCMB-GC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C3634T C4071T G6513A C14408T C15324T A16464G AA21550CT A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_530105
 2020-05-23 2020-09-10
 Spain hCoV-19/Spain/MD-R59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5526T C14408T A20268G A23403G C27610T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_537557
 2020-05-23 2020-09-16
 United States hCoV-19/USA/CA-UCLA-26/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C16386T A23403G GGG28881AAC GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_541333
 2020-05-23 2020-09-22
 Czech Republic hCoV-19/Czech Republic/NRL-6834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G488A G1135T C3037T G5554T C5934T C14408T G23311C A23403G G28321T GGG28881AAC TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_541334
 2020-05-23 2020-09-22
 Czech Republic hCoV-19/Czech Republic/NRL-6835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G488A G1135T C3037T G5554T C5934T C14408T G23311C A23403G G28321T GGG28881AAC TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_545119
 2020-05-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-2098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19011T C21057T A23403G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545121
 2020-05-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-2101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T C3037T C14408T C19011T C21057T A23403G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545122
 2020-05-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-2102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19011T C21057T A23403G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545125
 2020-05-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-2107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19011T C21057T A23403G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545127
 2020-05-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-2113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5839G T9742C C14408T A23403G A29209T T29317C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545129
 2020-05-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-2118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5806T C14408T C20474T A23403G A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545133
 2020-05-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-2124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545171
 2020-05-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-2189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G14335T C14408T A23403G G24193T T27984C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545177
 2020-05-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-2200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2228C C3037T C14408T C16163T A23403G GGG28881AAC C29722T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545178
 2020-05-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-2201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545180
 2020-05-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-2203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T A23403G G25088T G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545184
 2020-05-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-2211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19011T C21057T A23403G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545186
 2020-05-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-2213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545196
 2020-05-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-2236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7321T C11747T C14408T C19011T A23403G C26807T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545208
 2020-05-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-2255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2969G C3037T C14408T C17104T C18400T A23403G A24014G G25563T G26389T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559401
 2020-05-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A2DC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559424
 2020-05-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A30B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25217T C25350T T25899C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560393
 2020-05-23 2020-09-29
 Lithuania hCoV-19/Lithuania/C20-05-R13/2020
 TCCC18GGGA A26- C28T C241T C3037T C13994T C14408T C17678T G21624T T22321C A23403G GGG28881AAC C29253T C29518T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_568982
 2020-05-23 2020-10-02
 France hCoV-19/France/IHU-0828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T A1982G C3037T G3734A G8039T G11083T C14408T C16952T A23403G G25563T A26072T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

LR877409
 2020-05-23 2020-08-17
 Poland covid_hub_pl_ibch_0027
 

MT576640
 2020-05-23 2020-06-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_005/2020
 C241T A1163T C3037T C14408T G19348T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT576641
 2020-05-23 2020-06-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_06/2020
 C241T A1163T C3037T C3961T C4754T G7756T C14408T A23403G GGG28881AAC

MT576642
 2020-05-23 2020-06-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_009/2020
 C241T A1163T C1302T C3037T T9022C A10323G C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT576643
 2020-05-23 2020-06-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_015/2020
 C241T A1163T A2870G C3037T A8026G C10755T C14408T C15714T A23403G C24378A GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

MT576644
 2020-05-23 2020-06-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_042/2020
 C241T A1163T A1934G C3037T C3961T G12170A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

MT907518
 2020-05-23 2020-08-20
 Venezuela SARS-CoV-2/human/VEN/11MZ/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T G4510T C14408T A23403G C23929T G25135T G25720T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT967984
 2020-05-23 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6597/2020
 C241T C1059T C3037T T9070C C14408T A23403G G25563T G27390A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_455581
 2020-05-24 2020-05-31
 United States hCoV-19/USA/WI-GMF-M00004/2020
 C241T C3037T C14408Y C18568T C18877T A23040T A23403G G25563T

EPI_ISL_457008
 2020-05-24 2020-06-02
 United Kingdom hCoV-19/Scotland/EDB5363/2020
 C241T TGGTCATGTTATGGT508- T1576C C3037T C14408T A20268G A23403G C25844T C28854T

EPI_ISL_458086 MT560656
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC131/2020
 C241T C2836T C3037T C10277T C12076T C17766T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_458087 MT560657
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC132/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_458088 MT560671
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC133/2020
 C241T C2836T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_458089 MT560672
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC134/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T G28975C

EPI_ISL_458090 MT560674
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC135a/2020
 C241T C2836T C3037T C3426T C10369T C14408T C18877T G20131A C22444T C23277T A23403G G25563T C26735T C28854T

EPI_ISL_458091 MT560667
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC135b/2020
 C241T C2836T C3037T C3426T T8296C C10369T C14408T C18877T C22444T C23277T A23403G G25563T C28854T

EPI_ISL_458092 MT560679
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC136a/2020
 C241T C292T G2164T C2836T C3037T C4158T C5826T G8368A C14408T C18877T C22444T A23403G G25494T G25563T C26735T C28854T

EPI_ISL_458093 MT560704
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC136b/2020
 C241T C3037T C14408T C18877T C22444T A23403G C26735T C28854T

EPI_ISL_458094 MT560692
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC137a/2020
 C241T C2836T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_458095 MT560693
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC137b/2020
 C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_458096 MT576530
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC138/2020
 C241T C3037T C6543T C8756T G13713T C14408T A23403G C25714T C27577T

EPI_ISL_458097 MT576531
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC139a/2020
 C241T C2836T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C27673T C28854T

EPI_ISL_458098 MT560670
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC139b/2020
 C241T C2836T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_458099 MT560668
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC140/2020
 C241T C2836T C3037T C12076T C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_458100 MT560680
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC141a/2020
 C241T C2836T C3037T G3231T C14408T C18877T G21004T G21724T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_458101 MT560682
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC141b/2020
 C241T C3037T C14408T C18877T G21004T G21724T A23403G G25563T C28854T

EPI_ISL_458102 MT560690
 2020-05-24 2020-06-03
 India SARS-CoV-2/human/IND/GBRC142/2020
 C241T C2910T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_461911
 2020-05-24 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1116FA/2020
 C241T C2434T C3037T A12618C G13690A C14408T A23403G GGG28881AAC

EPI_ISL_461912
 2020-05-24 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111706/2020
 G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_472113
 2020-05-24 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A049D/2020
 C241T C3037T C4002T C7119T T13827C C14408T A23403G GGG28881AAC

EPI_ISL_472939
 2020-05-24 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1604A7/2020
 ATTAAAGGTTTA1- C241T C3037T T5573Y C6380T G11801A C14408T T18768C T19839C A23403G G24586T G25552T GGG28881AAC G28979T T29607C

EPI_ISL_473014
 2020-05-24 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160B0C/2020
 ATTA1- T10K C241T C3037T T8944C C14408T C14741T A23403G G29024K G29179T A29903-

EPI_ISL_473021
 2020-05-24 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160B75/2020
 A1- C241T C829T C1059T C3037T G12769T C14408T A23403G G25563T G27415A G28371T C29546T

EPI_ISL_473035
 2020-05-24 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160C90/2020
 ATTA1- C241T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C G22340T A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_473381
 2020-05-24 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FB7A/2020
 G210T C241T C2299T C3037T G3955T TCAAATTCG6329- C14408T A23403G T25663C C26936T G28371T G28539T GGG28881AAC

EPI_ISL_473382
 2020-05-24 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FB89/2020
 C241T A2576T C3037T C5175T C6401T C14408T A23403G GGG28881AAC

EPI_ISL_473383
 2020-05-24 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FB98/2020
 C241T C2416T C3037T C4002T G10097A C13536T C14408T A23403G C23731T T24733C C25006T GAT27382CTC GGG28881AAC

EPI_ISL_473745
 2020-05-24 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A T11075C C13862T T14392G C14408T C14937T A23403G T27296C C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475169 MT657275
 2020-05-24 2020-06-23
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_018/2020
 C241T A1163T C3037T C14408T A19515G A23403G G27147T GGG28881AAC

EPI_ISL_475170 MT655742
 2020-05-24 2020-06-23
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_017/2020
 C241T A1163T C3037T C14408T G17259T G22343C A23403G G28085A GGG28881AAC G29747T

EPI_ISL_475403
 2020-05-24 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C7E29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7675T T8908C C14408T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475423
 2020-05-24 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C9962/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6432T G7675T T8908C C14408T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475754
 2020-05-24 2020-06-24
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_025/2020
 C241T A1163T C3037T G6359A C14408T C23029T A23403G C27389T GGG28881AAC

EPI_ISL_475760
 2020-05-24 2020-06-24
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_021/2020
 C241T A1163T C3037T C14408T TTT21980- A23095G A23403G GGG28881AAC

EPI_ISL_478079
 2020-05-24 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G18380T G19542T G20679A A23403G T27576G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478094
 2020-05-24 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1938T C3037T C12053T C14408T A23403G G25088T T25496C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478256
 2020-05-24 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T967C G970A C3037T C14408T A20268G G22225T A23403G T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479544
 2020-05-24 2020-06-30
 India hCoV-19/India/NIV-42694/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T G4128T C5700A T6552A T7582C C17894T C21699T G21701A A23403G A24400G T24835G C25207T G28857T GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479592
 2020-05-24 2020-06-30
 Singapore hCoV-19/Singapore/514/2020
 C6310A C6312A G8852K G11083T C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_481146
 2020-05-24 2020-07-02
 India hCoV-19/India/ILSCV30442/2020
 C241T T796C C3037T C14408T A23403G G24751T GGG28881AAC G29744A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481147
 2020-05-24 2020-07-02
 India hCoV-19/India/ILSCV31185/2020
 C241T C3037T C7000T C8917T G9389A C14408T A23403G GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_485814
 2020-05-24 2020-07-09
 United States hCoV-19/USA/VA-DCLS-0494/2020
 AT1- C241T C1059T C3037T A8633G A11307G C14408T A23403G G25287T G25563T G26152T G29736T C29870A

EPI_ISL_485815
 2020-05-24 2020-07-09
 United States hCoV-19/USA/VA-DCLS-0498/2020
 ATT1- C241T C1059T C2644T C3037T A8633G A11307G C14408T A23403G G25287T G25563T G26152T G29736T

EPI_ISL_485816
 2020-05-24 2020-07-09
 United States hCoV-19/USA/VA-DCLS-0499/2020
 ATT1- C241T C1059T C3037T A8633G A11307G C14408T A23403G G25287T G25563T G26152T G29736T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_487112
 2020-05-24 2020-07-13
 Nigeria hCoV-19/Nigeria/ON505-CV43/2020
 C241T C455T C3037T C3811T C12513T C14408T C18877T G21898T A23403G G25563T C26735T C29769T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_487543
 2020-05-24 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B48A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C12546T C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488860
 2020-05-24 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A1FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7020G C7420T C7600T C14408T A23403G G25563T T25577G C25904T A26358G G26842A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491997
 2020-05-24 2020-07-18
 Oman hCoV-19/Oman/205038687/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G10265A C14408T C16293T A23403G A25747G C28854T GGG28881AAC G29862C GA29864-C GA29868AG AAAAA29873TCTTT AA29880TC AAAAAAAAAAAAAAAAAAAAA29883GTG

EPI_ISL_492492
 2020-05-24 2020-07-20
 United Kingdom hCoV-19/England/NORT-29AC7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495954 MT833980
 2020-05-24 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1528/2020
 A1- C241T C3037T C13860T C14408T C15933T G16968T T19839C C21646T A23403G C27595T GGG28881AAC C29784T AAAAAA29898-

EPI_ISL_495955 MT834173
 2020-05-24 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1529/2020
 ATTAAAGGTTTA1- C241T C3037T C10537T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495956 MT834152
 2020-05-24 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1530/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496582
 2020-05-24 2020-07-24
 India hCoV-19/India/NCCS_NR2513/2020
 AT1- C241T C313T C3037T C5700A C14408T C18115T A23403G GGG28881AAC

EPI_ISL_496583
 2020-05-24 2020-07-24
 India hCoV-19/India/NCCS_NR2517/2020
 ATTAAAGGTTTATACC1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_496584
 2020-05-24 2020-07-24
 India hCoV-19/India/NCCS_NR2523/2020
 ATTAAAG1- C241T C3037T C3634T T3907C T11587C C14408T C15324T G22468T A23403G C28887T C29627T AAAA29900-

EPI_ISL_496585
 2020-05-24 2020-07-24
 India hCoV-19/India/NCCS_NR2527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3634T C14408T C15324T G22203A A23403G

EPI_ISL_497882
 2020-05-24 2020-07-25
 India hCoV-19/India/AFMC_5653/2020
 ATTA1- C241T C313T C3037T C5700A C14408T A23403G G25690T A26161- GGG28881AAC G29332T C29666T

EPI_ISL_497883
 2020-05-24 2020-07-25
 India hCoV-19/India/AFMC_5643/2020
 ATTAAAGGTTT1- C241T C313T C3037T C5700A C14408T C16750- C20762T A23403G GGG28881AAC GG29383TT T29867A

EPI_ISL_497884
 2020-05-24 2020-07-25
 India hCoV-19/India/AFMC_5604/2020
 ATTAAAGGTTTATACCT1- C241T A1002- C3037T C3634T T3907C T11587C C14408T C15324T G22468T A23403G C28887T

EPI_ISL_499986
 2020-05-24 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A1247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8683T A11531R C13335T C14408T A20268G A23403G C28854T

EPI_ISL_500706
 2020-05-24 2020-07-29
 Australia hCoV-19/Australia/NSW2314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G968A C8782T G22468T T28144C G28878A G29742A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_501163
 2020-05-24 2020-07-30
 United States hCoV-19/USA/WA-UW-9798/2020
 ATTAAAGGTT1- AC35WT C241T C1059T C3037T T7185C A13707G C14408T G16912T C18029T C22050T A23403G G25563T T26023C G29553A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_508162
 2020-05-24 2020-08-04
 India hCoV-19/India/AR15/2020
 ATTAA1- C241T C313T C3037T C5700A C8139T C14318T C14408T A23403G C26447T GGG28881AAC G29868A

EPI_ISL_508411
 2020-05-24 2020-08-04
 India hCoV-19/India/IK93/2020
 A1- A4G C241T C3037T C7843T G9817A C14408T G15451A G16647T G21220A G22199T G22343A C22550T A23403G C29774G G29868A

EPI_ISL_508412
 2020-05-24 2020-08-04
 India hCoV-19/India/IK96/2020
 ATTAAAGGT1- C241T C3037T C12115T C14408T C17285T G17761T T19026C A23403G G27708A G28221T C28528T G29868A

EPI_ISL_508413
 2020-05-24 2020-08-04
 India hCoV-19/India/IK97/2020
 A1- A4C C241T C900T C3037T C6312T A13498G T13983C C14408T A23403G G29868A

EPI_ISL_508414
 2020-05-24 2020-08-04
 India hCoV-19/India/IK99/2020
 C241T C3037T C4633T C13730T C14408T C17913T A23403G G25445T G29868A

EPI_ISL_508453
 2020-05-24 2020-08-04
 India hCoV-19/India/S63/2020
 A1- A4T C241T C3037T C14408T A20268G G23236T A23403G G29868A

EPI_ISL_508454
 2020-05-24 2020-08-04
 India hCoV-19/India/S64/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C10039T C14408T C18877T C22444T A23403G G25563T C26735T C28854T G29868A

EPI_ISL_508456
 2020-05-24 2020-08-04
 India hCoV-19/India/S66/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3397T C3634T A12381G C14408T C15324T G18589A A22459T A23403G G29868A

EPI_ISL_509133
 2020-05-24 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0419/2020
 ATTA1- C241T C3037T C14408T A20268G G22894T A23403G C23604T C25626T C28854T

EPI_ISL_509138
 2020-05-24 2020-08-05
 United States hCoV-19/USA/WA-OHSU-0437/2020
 ATTAAAGGTTTATACCT1- A187G C241T C1616T C3037T C10714T C13620T C14408T C19763T T22242C A23403G T25729C

EPI_ISL_510643
 2020-05-24 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2307/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_510812
 2020-05-24 2020-08-07
 Sweden hCoV-19/Sweden/20-08905/2020
 C241T C1059T C3037T C14408T G17193T A23403G G24368T G25563T

EPI_ISL_510837
 2020-05-24 2020-08-07
 Sweden hCoV-19/Sweden/20-51711/2020
 C241T C1059T C3037T C6883T C11173T C14408T C23191T A23403G G24368T G25563T C26071T

EPI_ISL_511907
 2020-05-24 2020-08-10
 India hCoV-19/India/IK95/2020
 ATTAAAGG1- C241T C3037T C12115T C14408T G17761T T19026C A23403G G27708A G28221T G29868A

EPI_ISL_513002
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH826/2020
 C241T C3037T C11345T C14408T G25563T C26735T

EPI_ISL_513003
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH828/2020
 C241T C3037T C14408T C14724T G15906T GGG28881AAC

EPI_ISL_513004
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH830/2020
 C241T C3037T C14408T C14724T G15906T GGG28881AAC

EPI_ISL_513005
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH831/2020
 C241T C1191T C3037T C12312T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513006
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH833/2020
 C241T C1191T C3037T C12312T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513008
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH835/2020
 C241T C3037T C14408T GGG28881AAC

EPI_ISL_513009
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH836/2020
 C241T C3037T G9479T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513010
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH837/2020
 C241T C3037T C14408T C18877T G25563T C26735T

EPI_ISL_513012
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH840/2020
 C241T T8996C C14408T T27484C GGG28881AAC

EPI_ISL_513014
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH842/2020
 C241T C3037T T8996C C14408T T27484C GGG28881AAC

EPI_ISL_513015
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH843/2020
 C241T C3037T C14408T C18877T G25563T C26735T

EPI_ISL_513016
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH844/2020
 C241T C3037T C4586A C14408T G25563T C26735T

EPI_ISL_513017
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH845/2020
 C241T C3037T T8996C C14408T T27484C GGG28881AAC

EPI_ISL_513018
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH846/2020
 C241T C3037T C4586A C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513019
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH847/2020
 C241T C3037T T8996C C14408T T27484C GGG28881AAC

EPI_ISL_513020
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH866/2020
 C241T C14408T C18877T A23403G

EPI_ISL_513021
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH867/2020
 C241T C14408T GGG28881AAC

EPI_ISL_513022
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH868/2020
 C241T C1191T C3037T C14408T A23403G GGG28881AAC G29477T

EPI_ISL_513023
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH869/2020
 C241T C3037T C14408T A23403G GGG28881AAC C29563T

EPI_ISL_513024
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH870/2020
 C241T C3037T C10252T C11345T C14408T C17004T C18877T A23403G G25563T C26735T

EPI_ISL_513025
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH871/2020
 C241T C3037T C14408T C15352T A23403G GGG28881AAC

EPI_ISL_513026
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH872/2020
 C241T G295A C3037T C14408T C25945A GGG28881AAC

EPI_ISL_513027
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH873/2020
 C241T C3037T C14408T A20898G T27484C GGG28881AAC

EPI_ISL_513028
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH875/2020
 C241T C3037T C9924T C10582T C14408T C18877T C22444T G25563T C26735T C28854T

EPI_ISL_513029
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH877/2020
 C241T C3037T G10427A C14408T A23403G GGG28881AAC

EPI_ISL_513032
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH882/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513033
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH883/2020
 C241T C3037T C10582T C14408T C18877T C20611T C22444T G25563T C26735T C28854T

EPI_ISL_513034
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH884/2020
 C241T C3037T C10582T C14408T C20611T C22444T G25563T C26735T C28854T

EPI_ISL_513035
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH886/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_513036
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH887/2020
 C241T C3037T C14408T GGG28881AAC

EPI_ISL_513037
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH888/2020
 C241T C3037T C14408T G25563T GGG28881AAC

EPI_ISL_513038
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH889/2020
 C241T C3037T G3728T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513039
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH890/2020
 C241T C3037T C14408T C15352T C18877T G25563T C26735T GGG28881AAC

EPI_ISL_513040
 2020-05-24 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH891/2020
 C241T C3037T C14408T C18877T G25563T C26735T C28744T C29013T

EPI_ISL_513718 MW035954
 2020-05-24 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2168/2020
 ATTAAA1- C241T C1059T C3037T G4105A C4878T G10759K C14408T C16762T G18803T A23403G G25563T C29296T

EPI_ISL_513719 MW035951
 2020-05-24 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2169/2020
 AT1- C241T C1059T C3037T G4105A C4878T G10759T C14408T C16762T G18803T A23403G G25563T C29296T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513720 MW035966
 2020-05-24 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G4105A C4878T C14408T C16762T G18803T A23403G G25563T C29296T

EPI_ISL_513721 MW035965
 2020-05-24 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T G4105A C4878T C14408T C16762T G18803T A23403G A24041G G25563T C29296T

EPI_ISL_513724 MW035944
 2020-05-24 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2174/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T G4105A C4878T G10759T C14408T C16762T G18803T A23403G G25563T G25879T C29296T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513726 MW035963
 2020-05-24 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2176/2020
 ATTAAAGGTT1- C241T C1059T C3037T G4105A C4878T C14408T C16762T G18803T A23403G G25563T C29296T

EPI_ISL_513727 MW035942
 2020-05-24 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2177/2020
 ATTAAAGG1- C241T C1059T C3037T G4105A C4878T C14408T C16762T G18803T A23403G C23638Y G25563T C27532Y A28951R C29296T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513728 MW035974
 2020-05-24 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T G4105A C4878T C14408T C16762T G18803T A23403G G25563T C29296T

EPI_ISL_515096 MT890230
 2020-05-24 2020-08-15
 Ghana SARS-CoV-2/human/GHA/35563_S37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C2306T C5672T C5986T C8782T C13515T C21575T C24370T G24926T T28144C G28878A G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_522824 MT843285
 2020-05-24 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T TCTTAATGACAACCT1600- C2416T C3037T T6197C C14408T G16975T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_522834 MT843295
 2020-05-24 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T A6613G C14408T C15540T A23403G G25563T G26589A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_523130
 2020-05-24 2020-08-26
 Netherlands hCoV-19/Netherlands/FL-EMC-21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523131
 2020-05-24 2020-08-26
 Netherlands hCoV-19/Netherlands/FL-EMC-22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G GTTAATCCAGTA26158- G26428T GGG28881AAC G29468T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523163
 2020-05-24 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G GTTAATCCAGTA26158- GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523200
 2020-05-24 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5259T C14408T C19170T G19509A A23403G C26313T GGG28881AAC G29628T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523245
 2020-05-24 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T13006C C14408T C17550T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523443
 2020-05-24 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21621T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523444
 2020-05-24 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21621T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524013
 2020-05-24 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-17217V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C14408T G17721T A23403G GGG28881AAC G28975A C29666T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524107
 2020-05-24 2020-08-27
 United States hCoV-19/USA/UT-08311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7315C C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524341
 2020-05-24 2020-08-27
 United States hCoV-19/USA/UT-08594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T G22021T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524358
 2020-05-24 2020-08-27
 United States hCoV-19/USA/UT-08617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1555T C3037T A3954G C14408T A23403G C24863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524387
 2020-05-24 2020-08-28
 United States hCoV-19/USA/UT-08661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T C17125T C18680T T19473C T19839C A22320G A23403G G25523T G25563T C27964T T29685G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526572 MT956703
 2020-05-24 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C8782T C17010T C17747T A17858G C18060T C23123T A23403G A23416T G25660T G27122A C27739T T28144C G28178T C28717T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_528810
 2020-05-24 2020-09-09
 India hCoV-19/India/TG-CCMB-GC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G4354A C6573T C14408T AA21550CT G23120T A23403G C25528T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528812
 2020-05-24 2020-09-09
 India hCoV-19/India/TG-CCMB-GC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23403G G26951C GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_530106
 2020-05-24 2020-09-10
 Spain hCoV-19/Spain/MD-R60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3849A C14408T T19839C A23403G G27506T GGG28881AAC C29203T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534833
 2020-05-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B2FE2/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C6636T C11200T C14408T G19072T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_534921
 2020-05-24 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3FC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C3876T C9333T C14408T A23403G G27238T G28077T A29886G AAAAAAAAA29895-

EPI_ISL_537259
 2020-05-24 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2FA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G G9753R C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537559
 2020-05-24 2020-09-16
 United States hCoV-19/USA/CA-UCLA-27/2020
 A1- C241T C1059T C3037T C7528T C14408T G22225T A23403G G25563T G26718T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_539782
 2020-05-24 2020-09-19
 Czech Republic hCoV-19/Czech Republic/NRL-6232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G488A G1135T C3037T G5554T C14408T T15060C G23311C A23403G G28321T GGG28881AAC TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_540734
 2020-05-24 2020-09-21
 United Kingdom hCoV-19/England/SHEF-C6CD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A23403G C26895T G27670C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541332
 2020-05-24 2020-09-22
 Czech Republic hCoV-19/Czech Republic/NRL-6833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1135T C3037T G3638T G5554T C14408T C20555T A23403G G28321T GGG28881AAC TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_545176
 2020-05-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-2198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4090T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545195
 2020-05-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-2235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545206
 2020-05-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-2253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C300T T833C C1059T C3037T A12387G C14408T T15030C G19542A A23403G G25563T C26894T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545207
 2020-05-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-2254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C300T T833C C1059T C3037T T12122A A12387G C14408T T15030C G19542A A23403G G25563T C26894T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545210
 2020-05-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-2260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1734T C3037T C14408T A23403G C23664T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545216
 2020-05-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-2267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15386T C23185T A23403G G28179C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559444
 2020-05-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49F169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4467T G10097A C14408T C23280T A23403G C23731T C25782T G28580T GGG28881AAC C29311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559451
 2020-05-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49ED57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8327Y C14408T A23403G G25217T C25350T T25899C C26256Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559486
 2020-05-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49EE54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5336G C14408T C23191T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559538
 2020-05-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49EDDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T A8450G G9473A G10097A C14408T C14605T G17721T C18032T C21614T TTA21991- A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559609
 2020-05-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49EF24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T A8450G G9473A G10097A C14408T C14605T G17721T C18032T C21614T TTA21991- A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559651
 2020-05-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49EE63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6582T C7321T C13059T C14408T C19983T A23403G G24095T GGG28881AAC C29284T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559653
 2020-05-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49F239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24232W G25217T C25350T T25899C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559714
 2020-05-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-4699F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G4399A C8809T G10097A C14408T A23403G C23731T C25714T G28580T GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559725
 2020-05-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-469766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C8809T G10097A C14408T A23403G C23731T C25714T G28580T GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559727
 2020-05-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-469924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C8809T G10097A C14408T A23403G C23731T C25714T G28580T GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559746
 2020-05-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-4694C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C8809T G10097A C14408T C18828Y A23403G C23731T C25714T G28580T GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559747
 2020-05-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-46958A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C8809T G10097A C14408T A23403G C23731T C25714T G28580T GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT664105
 2020-05-24 2020-06-25
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_021/2020
 C241T A1163T C3037T C14408T TTT21980- A23095G A23403G GGG28881AAC

EPI_ISL_455578
 2020-05-25 2020-05-31
 United States hCoV-19/USA/WI-GMF-04314/2020
 C241T C3037T C14408T C18568T C18877T AA21550MW A23040T A23403G G25563T

EPI_ISL_461739
 2020-05-25 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5448/2020
 C241T T1576C C3037T C14408T A20268G A23403G C25844T C28854T

EPI_ISL_461759
 2020-05-25 2020-06-06
 United Kingdom hCoV-19/Scotland/EDB5590/2020
 C241T T1576C C3037T C14408T A20268G A23403G G25494T C25844T C28854T

EPI_ISL_463893
 2020-05-25 2020-06-10
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/03_Tuzla/2020
 TTAAAGGTTTATACCTTCCCAGGT2- G72A T78G C241T CGGA486- C492T C884G T927A T983G ACTGT2120- C3037T T3370C G4082C A4089G T4986G G4988T TATTAGGTTTGAAAACCCTTGCTAC6612- ATT7394- C9152G A10547C A10551T C10626A T11288G G11291T T11295G T12394C T13874C C13876T C14408T TG15975CC T16183A G16189A T16598C C17010A TC17765CA T18696C G18745A C19637T T19640A C20016T C21234T G22299T C22388A A22850G A23403G G23811A T24326G G25691C T26324A G26980A T26989A T27850A GA27852CC T28106A G28109C A28281G AGCAGT28874- GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_466922
 2020-05-25 2020-06-12
 Germany hCoV-19/Germany/BAV-MVP0289/2020
 C241T C3037T C3092T C14408T G15327T A23403G G25855T G26840A C27999T

EPI_ISL_466923
 2020-05-25 2020-06-12
 Germany hCoV-19/Germany/BAV-MVP0291/2020
 C241T C3037T C3092T A4397G C14408T G15327T T18164C A23403G G25855T G26840A C27999T

EPI_ISL_467507
 2020-05-25 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0157/2020
 AT1- C241T C3037T A7064G C14408T C21622T C22675T A23403G GGG28881AAC C29137T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_469069
 2020-05-25 2020-06-17
 Sweden hCoV-19/Sweden/20-51678/2020
 C241T G1738T C3037T A4495G C14195A C14408T A23403G

EPI_ISL_471590
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T G1738T C3037T G3530T T7734C C11758T C14408T C18877T T22200C A23403G A25381C G25563T C26735T C28969T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471591
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G3530T T7734C C11758T C14408T C18877T T22200C A23403G G25563T A25788G C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471592
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C3244T G3530T T7734C C11758T C14408T C18877T T22200C A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471593
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G3530T T7734C C11758T C14408T C18877T T22200C A23403G G25563T C26735T C28969T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471594
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471595
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471596
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G3530T T7734C C11758T C14408T C18877T AA21550CT T22200C A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471597
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T AA21550CT A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471598
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T AA21550CT A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471600
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471601
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T A27379G GAT27382CTC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471602
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471603
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C17304T C18877T A21551T A23403G G25563T C26735T C29733T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471604
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G11670A C14408T C17304T C18877T A23403G G25563T C26735T C29733T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471605
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G3530T T7734C C11758T C13430T C14408T C18877T T21072G T22200C A23403G G25563T C26735T G28568T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471606
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G3530T T7734C C11758T C14408T C18877T T22200C A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471607
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G3530T T7734C C11758T C14408T C18877T AA21550CT T22200C A23403G G25563T C26735T C28969T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471608
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471609
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471610
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471611
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G3530T T7734C C11758T C14408T C18877T A21550C T22200C A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471612
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T A21550C A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471613
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471614
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471615
 2020-05-25 2020-06-22
 India hCoV-19/India/CCMB_L1500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_472104
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A0363/2020
 C241T C3037T G3871T G4399T C13862T C14408T A23403G C25714T C26326A C27294T G28027T C28836T

EPI_ISL_472105
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A0372/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T G3871T G4399T C13862T C14408T A23403G C25714T C27294T G28027T C28836T

EPI_ISL_472106
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A03AF/2020
 C241T C3037T C9700T C14408T A23403G C26606T C28290T

EPI_ISL_472109
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A03DC/2020
 C241T C3037T C4002T C7119T T13827C C14408T A23403G GGG28881AAC

EPI_ISL_472115
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A04D9/2020
 C241T C3037T C12534T C14408T G17590T A23403G GGG28881AAC C29284T

EPI_ISL_472118
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A0521/2020
 G124A C241T C3037T G10097A C14408T C23191T A23403G C23731T G28580T GGG28881AAC C29421T

EPI_ISL_472850
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15FD55/2020
 ATTAAAGGTTTATACC1- C241T G922A C3037T C9565T C14408T C14741T C22997T A23403G T24923C G25459T

EPI_ISL_472857
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15FDEC/2020
 ATTAAAGGT1- C241T G2477A C2749T C3037T C6026T C10369T G11801A C14408T T19839C C21221Y A23403G G25552T AG28877TC GGG28881AAC C29555T

EPI_ISL_472991
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1608D8/2020
 ATTAAAGGTTT1- C241T C3037T C5892T A11595G C14408T A19163G A23403G G23663T C28292A GGG28881AAC

EPI_ISL_473348
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5F8EC/2020
 C241T C3037T G10097A C10332T A12410G C14408T A23403G C23731T G26439T G28580T GGG28881AAC

EPI_ISL_473746
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13384T C14408T A23403G G26615T GGG28881AAC A29767C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473761
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C7945T C12710T T15915C C16466Y C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473764
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A C3037T C3411T C3885T C14408T C17104T A20268G A23403G C28354T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475347
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C0BCF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26151T C26735T C27143T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475391
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C630D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6526G G10097A C11750T C13381T C14408T A23403G C23731T A23992T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475453
 2020-05-25 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CD1EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7675T T8908C C14408T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475522
 2020-05-25 2020-06-23
 Sweden hCoV-19/Sweden/20-14937/2020
 C241T C1059T C1263T C3037T A6985C C14408T A23403G G25563T G28371T

EPI_ISL_475523
 2020-05-25 2020-06-23
 Sweden hCoV-19/Sweden/20-14941/2020
 C241T C1059T C3037T C6310T C6402T C14408T G14767T A23403G G24368T G25563T C27972T

EPI_ISL_476062
 2020-05-25 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20926/2020
 C241T C1059T T2815C C3037T C14408T A23403G G25563T

EPI_ISL_476137
 2020-05-25 2020-06-25
 Sweden hCoV-19/Sweden/20-51681/2020
 C241T C3037T C5413T A6693G C14195A C14408T A23223T A23403G

EPI_ISL_476896
 2020-05-25 2020-06-26
 India hCoV-19/India/DRDE_4624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C313T C3037T C5700A T8022K T12411K C14408T A23403G A25080R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_478095
 2020-05-25 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C3411T C3885T A5353G C8092T C14408T C17104T A20268G A22623G A23403G G28198T C28253T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478382
 2020-05-25 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A0433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3045T C10507T C12005T C14408T A23403G -28029TA GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478383
 2020-05-25 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A04BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3078G C8247T C10507T G11335T C12005T C14408T A23403G -28029TA GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479546
 2020-05-25 2020-06-30
 India hCoV-19/India/NIV-44241/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C3117T C3634T T13387C C15324T C20233T A23403G C29362A AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_482614
 2020-05-25 2020-07-04
 India hCoV-19/india/NCDC5743_CSIR-IGIB/2020
 C1059Y C3037Y T4941Y C6310M C6312A G11083K G12685K C13730T C15509M T15513W T16232W T22515Y C23929T T24622Y C28311Y C28854Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482616
 2020-05-25 2020-07-04
 India hCoV-19/india/NCDC6082_CSIR-IGIB/2020
 C241T C3037T T8022K C13730Y C14408Y G18670R C18877Y C22444T A23403G G25563K C26735T C28139T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_484662
 2020-05-25 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR3868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A G12163A C13862T C14408T A23403G C28486T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484663
 2020-05-25 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR3869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A G12163A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484664
 2020-05-25 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR3870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A G12163A C13862T C14408T C15024Y A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486834
 2020-05-25 2020-07-11
 Romania hCoV-19/Romania/ROSV/2020/P1
 TTAAAGGTTTATACCTTCCCAGGT2- C241T T2593C C3037T T3746G T4183A G7756T C11563T C14408T C15180T G19891T A20268G A23403G C27431T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_487398
 2020-05-25 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-10/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487399
 2020-05-25 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-11/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T C28728T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487400
 2020-05-25 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-12/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487401
 2020-05-25 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-13/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487404
 2020-05-25 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-16/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487405
 2020-05-25 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-17/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487406
 2020-05-25 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-18/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487407
 2020-05-25 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-19/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487409
 2020-05-25 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-20/2020
 C241T C1059T C3037T C6406T C14408T C18744T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487419
 2020-05-25 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-3/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487426
 2020-05-25 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-4/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487427
 2020-05-25 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-5/2020
 C241T C1059T C3037T C5672T C6406T T10516C C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487429
 2020-05-25 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-7/2020
 C241T C1059T C3037T C6406T A7394G C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487430
 2020-05-25 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-8/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487431
 2020-05-25 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-9/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487544
 2020-05-25 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B44E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C71M C241T C1441T C3037T G5374K G10097A G10848S G12428K C14408T C19524T A23403G C23731T T25518Y G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487552
 2020-05-25 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B46C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4300T C14408T C15324T A23403G C25433T C29546T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487617
 2020-05-25 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B45D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5148T C7851T C14408T C20233T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490731
 2020-05-25 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-16583D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G419A C829T C1059T A1547W C3037T G3994A G11670A C14408T C18508T A23403G G25563T G27415A G28371T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_490740
 2020-05-25 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-16590D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C9438T C14408T A23403G GGG28881AAC G29777T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_490802
 2020-05-25 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165DC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A2699G C3037T G5629T C14408T C14741T G22199T A23403G T24923C AA29902-

EPI_ISL_491189
 2020-05-25 2020-07-16
 Portugal hCoV-19/Portugal/IGC3484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491998
 2020-05-25 2020-07-18
 Oman hCoV-19/Oman/205038852/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T A23403G C27005T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_492043
 2020-05-25 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_57437/2020
 ATTAAAGGTTTATACCTT1- T25A C241T C3037T G4649T C7819T C8092T C10519T C14408T C20759T A23403G T27299C C27524T GGG28881AAC G29000T T29148C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_492461
 2020-05-25 2020-07-20
 United Kingdom hCoV-19/England/NORT-29AD11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T C3768T C14408T G22093A A23403G C25844T C27577T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492462
 2020-05-25 2020-07-20
 United Kingdom hCoV-19/England/NORT-29AE2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T C24642T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492493
 2020-05-25 2020-07-20
 United Kingdom hCoV-19/England/NORT-29ADC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493970
 2020-05-25 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB6651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T T15669C C18904T A23403G G25606T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493971
 2020-05-25 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB6652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T T15669C C18904T A23403G G25606T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493972
 2020-05-25 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB6653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T T15669C C18452T C18904T A23403G G25606T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493973
 2020-05-25 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB6654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T T15669C C18904T A23403G G25606T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494104
 2020-05-25 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166CF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8944C C14408T C14741T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_494117
 2020-05-25 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166DF1/2020
 ATTA1- C241T C3037T C6312A A10948G C14408T G18538T A20136G A23403G GGG28881AAC CATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29696-

EPI_ISL_495962 MT834209
 2020-05-25 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1536/2020
 AT1- A2161G C3037T C14408T C16376T C18877T G19648A A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_495963 MT834168
 2020-05-25 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1537/2020
 AT1- C241T C3037T A4197G C14408T G16813A A23403G G24368C T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496540
 2020-05-25 2020-07-24
 India hCoV-19/India/AFMC_5670/2020
 ATTAAAGGTTTA1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC

EPI_ISL_496541
 2020-05-25 2020-07-24
 India hCoV-19/India/AFMC_5688/2020
 AT1- T13C C241T C1404T T1872G C3037T C3634T C14408T C15324T G16935T A23403G C29409T

EPI_ISL_496542
 2020-05-25 2020-07-24
 India hCoV-19/India/AFMC_5694/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1404T T1872G C3037T C3634T C14408T C15324T G16935T A23403G G29628T

EPI_ISL_496543
 2020-05-25 2020-07-24
 India hCoV-19/India/AFMC_5695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1404T T1872G C3037T C3634T C14408T C15324T G16935T A23403G

EPI_ISL_496544
 2020-05-25 2020-07-24
 India hCoV-19/India/AFMC_5727/2020
 AT1- A4T G7A T13C C241T C1404T T1872G C3037T C3634T C14408T C15324T G16935T A23403G

EPI_ISL_496545
 2020-05-25 2020-07-24
 India hCoV-19/India/AFMC_5807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C313T C3037T C5700A C14408T C17010T C20384T A23403G GGG28881AAC

EPI_ISL_500968
 2020-05-25 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106D99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T C17004T A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_500976
 2020-05-25 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106DA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- C1420T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500984
 2020-05-25 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106DC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501029
 2020-05-25 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106D6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3274M A11117G C14408T C15324T C18904T A23403G G25606T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501162
 2020-05-25 2020-07-30
 United States hCoV-19/USA/WA-UW-9755/2020
 ATTAAAGGTTTATA1- TCCC18GGGA A2274C C8782T T8883C TT8885AA AGG13512TTA TA14222GC C17747T A17858G C18060T T18345C A22123G T23010C T23427C A23474G C25231T -25700CCC C27654G A27658T T28144C G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_508435
 2020-05-25 2020-08-04
 India hCoV-19/India/MW32/2020
 ATTAAAGGTTTATAC1- C20G T134C C241T C313T C3037T C5700A C14408T C20719T A23403G G28655T GGG28881AAC A29827T T29832C T29834A -29837A G29868A

EPI_ISL_508460
 2020-05-25 2020-08-04
 India hCoV-19/India/S70/2020
 ATTAAAGGTTTATACCTT1- C241T C313T C3037T C5700A C14408T G19635T A23403G C26447T GGG28881AAC G29868A

EPI_ISL_508481
 2020-05-25 2020-08-04
 India hCoV-19/India/S92/2020
 ATTAAAGGTTTATACCTTC1- C241T C313T C3037T C5700A C14408T G19635T A23403G C26447T GGG28881AAC G29868A

EPI_ISL_509134
 2020-05-25 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_509135
 2020-05-25 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T G3431T C7105A C8290T C11653T C14408T A20268G C20703T A23403G C24130T C25886T

EPI_ISL_509462 MT827224
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0058/2020
 ATTAA1- C241T C775T C1059T C3037T C14408T A23403G G25563T C27923T G28975T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859- A29902G

EPI_ISL_509463 MT827225
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0059/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C775T C1059T C3037T C14408T A23403G G25563T C27923T G28975T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_509464 MT827226
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0060/2020
 A1- C241T C775T C1059T C3037T C14408T A23403G G25563T G26834T A27660C C27923T G28975T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_509468 MT827230
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C775T C1059T C3037T C14408T A23403G G25563T C27923T G28975T A29869T AAAAAAA29897-

EPI_ISL_509469 MT827231
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0065/2020
 C241T C775T C1059T C3037T C14408T A23403G G25563T G26834T A27660C C27923T G28975T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509470 MT827232
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0066/2020
 ATTA1- T10G C241T C775T C1059T C3037T C3044T C9979T C10369T C14408T G19072T A23403G G25563T C27923T G28975T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509471 MT827233
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0067/2020
 A1- C8782T T28144C G28878A G29742A G29810T A29898G

EPI_ISL_509472 MT827234
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0068/2020
 ATTAAAGGTTT1- C241T C775T C1059T C3037T C3743T C14408T A23403G G25563T C27923T G28975T G29868C A29890G A29899G AA29902-

EPI_ISL_509473 MT827235
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0069/2020
 ATTAA1- C241T C775T C1059T C3037T C9979T C10369T C14408T G19072T A23403G G25563T C27923T G28975T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_509474 MT827236
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0070/2020
 ATTAAAGGTT1- C241T C775T C1059T C3037T C9979T C10369T C14408T G19072T A23403G G25563T C27923T G28975T

EPI_ISL_509475 MT827237
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0071/2020
 C241T C775T C1059T C3037T C14408T A23403G C23683T G25563T C27923T G28975T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_509476 MT827238
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0072/2020
 AT1- GT8CA T11A C241T C775T C1059T C3037T C9979T C10369T C14408T G19072T A23403G G25563T C27923T G28975T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_509477 MT827239
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T T28144C G28878A G29742A G29810T

EPI_ISL_509479 MT827241
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0075/2020
 ATTAAAGG1- T11G C241T C775T C1059T C3037T C14408T A23403G G25563T C27923T G28975T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509480 MT827242
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C775T C1059T C3037T C14408T A23403G G25563T C27923T G28975T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509481 MT827243
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C775T C1059T C3037T C9979T C10369T C14408T G19072T A23403G G25563T C27923T G28975T A29890G

EPI_ISL_509482 MT827244
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0078/2020
 ATTAA1- C241T C775T C1059T C3037T C9979T C10369T C14408T G19072T A23403G G25563T C27923T G28975T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509483 MT827245
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0079/2020
 ATT1- C4327T C8782T T28144C G28878A G29742A G29810T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_509484 MT827246
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0080/2020
 ATT1- T490A C1188T G2284A C3177T C6040T C8782T G12256T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G A29876T

EPI_ISL_509485 MT827247
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- T490A C1188T G2284A C3177T C6040T C8782T G12256T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G T29855G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_509487 MT827249
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0083/2020
 AT1- C241T C281T C2416T C3037T C13663T C14408T A21163G A23403G G25563T G25621A G26233T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_509488 MT827250
 2020-05-25 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0084/2020
 AT1- C241T C1059T C3037T C14408T C14599T C16260T A23403G G25563T G25720T G26428T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_510641
 2020-05-25 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2305/2020
 C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510642
 2020-05-25 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2306/2020
 A1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510644
 2020-05-25 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510645
 2020-05-25 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2309/2020
 ATT1- C241T C1059T T1831C C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_510646
 2020-05-25 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2310/2020
 ATTAAAG1- C241T C1059T T1831C C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_510647
 2020-05-25 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2311/2020
 ATTAAAGG1- C241T C1059T T1831C C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_510652
 2020-05-25 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2316/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T GAA20263ATT A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_510656
 2020-05-25 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2320/2020
 ATTAAAGG1- C241T C1059T T1831C C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_510841
 2020-05-25 2020-08-07
 Sweden hCoV-19/Sweden/20-51740/2020
 C241T C3037T C14195A C14408T A23403G G26217C G28357T G29628T

EPI_ISL_510859
 2020-05-25 2020-08-07
 Sweden hCoV-19/Sweden/20-51894/2020
 C241T C3037T C13264T C14408T G15789A G21330T G21604T A23403G C26447T GGG28881AAC C28887T G29050A

EPI_ISL_512433
 2020-05-25 2020-08-11
 United Kingdom hCoV-19/England/PORT-2F5DE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T484C C1059T C3037T A14199T C14408T A23403G G23593T T24529C G25217T G25563T C29119T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_513725 MW035936
 2020-05-25 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2669Y C3037T A3715C C6664T C10527Y C10718Y C14408T A18139G T20020K A20268G C20483Y A23403G C28751Y C28854T C29247Y

EPI_ISL_514160 MT890293
 2020-05-25 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0814/2020
 ATTAAAGGTTTA1- C241T C450T C1441T C2416T C3037T C8917T T12112C C14408T G21974C A23403G G25563T G26233T C28706T

EPI_ISL_516976
 2020-05-25 2020-08-24
 India hCoV-19/India/UP-NBRI-N48-TEI094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C14408T G15543A C18877T C22444T C23248T A23403G G24620T T25556G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516980
 2020-05-25 2020-08-24
 India hCoV-19/India/UP-NBRI-N52-TEH623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516982
 2020-05-25 2020-08-24
 India hCoV-19/India/UP-NBRI-N54-TEH857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516983
 2020-05-25 2020-08-24
 India hCoV-19/India/UP-NBRI-N55-TEH861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C4716T C14408T G15202T C18877T C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516984
 2020-05-25 2020-08-24
 India hCoV-19/India/UP-NBRI-N56-TEH862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_520706
 2020-05-25 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290314014/2020
 C556T C8782T G11230T C23635T T28144C G28167A G28878A G29742A

EPI_ISL_522825 MT843286
 2020-05-25 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C775T C1059T C3037T C14408T A23403G G25563T G26834T A27660C C27923T G28975T T29867G

EPI_ISL_523132
 2020-05-25 2020-08-26
 Netherlands hCoV-19/Netherlands/FL-EMC-23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523164
 2020-05-25 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G GTTAATCCAGTA26158- GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523185
 2020-05-25 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C15981T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523259
 2020-05-25 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T G11083T T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523262
 2020-05-25 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T G11083T T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523309
 2020-05-25 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5259T C14408T C19170T G19509A A23403G C26313T G28703T GGG28881AAC G29628T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524014
 2020-05-25 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-17291V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G A68G C241T C3037T C5497T T6964C T12418C C14408T A20073G A23403G A26471G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524825
 2020-05-25 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15763T C15960T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526573 MT956704
 2020-05-25 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1087/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T T4351C C10319T C14408T G15493T C16289T A23403G G25563T G26031T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_529690
 2020-05-25 2020-09-10
 United Kingdom hCoV-19/Scotland/EDB5456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18788T T19839C A23403G A24862G G27147C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530107
 2020-05-25 2020-09-10
 Spain hCoV-19/Spain/MD-R61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A19080G A20268G A23403G G29734C ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534858
 2020-05-25 2020-09-14
 United Kingdom hCoV-19/England/OXON-B345B/2020
 C21T C241T C3037T C11200T C14408T G19072T A23403G G26720T GGG28881AAC AAAAAAAAA29895-

EPI_ISL_537257
 2020-05-25 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B2FD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540728
 2020-05-25 2020-09-21
 United Kingdom hCoV-19/England/SHEF-C483D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_542486
 2020-05-25 2020-09-23
 United States hCoV-19/USA/VA-PNCV19-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1059T G2246A C3037T C7081T C14408T C16260T A23403G G25088T G25563T C26688T G26690T ACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTT27574- C28821A GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_545276
 2020-05-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-2383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4090T C9438T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545277
 2020-05-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-2384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4090T C9438T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545281
 2020-05-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-2389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5826T C14408T A23403G T27984C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545283
 2020-05-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-2392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545285
 2020-05-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-2397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C11575T C14408T A18468C C19032T A20262G G21305A A23403G G25563T C27964T C28868T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545288
 2020-05-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-2401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2228C C3037T C14408T C16163T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545296
 2020-05-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-2413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T3618C C9180T G11083T C14408T A23403G G25563T C26110T T26540C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548250
 2020-05-25 2020-09-25
 Sweden hCoV-19/Sweden/20-51742/2020
 C241T C313T G1843T C3037T T7099C GTT11283- G14118T C14408T A23403G C25624T GGG28881AAC

EPI_ISL_559376
 2020-05-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4982D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15540T A23403G C26826T GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559379
 2020-05-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-498607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559393
 2020-05-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-498A0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9663T C9924T C14408T G19072T T19772Y A23403G C26256T G26268T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559404
 2020-05-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49843A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1957A C3037T C6026T G10097A C14408T C14605T G17721T C18032T C19145Y C21614T TTA21991- A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559407
 2020-05-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4986DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559409
 2020-05-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-498A47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559417
 2020-05-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4985FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559431
 2020-05-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4984B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560396
 2020-05-25 2020-09-29
 Lithuania hCoV-19/Lithuania/C20-05-R18/2020
 C241T G656A C1593T C3037T C14408T G21624T A23403G C23625T C27476T GGG28881AAC AAAAAAAAAA29894-

MT840184
 2020-05-25 2020-08-04
 United States SARS-CoV-2/human/USA/VA_PNCV19-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1059T G2246A C3037T C7081T C14408T C16260T A23403G G25088T G25563T C26688T G26690T ACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTT27574- C28821A GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_455582
 2020-05-26 2020-05-31
 United States hCoV-19/USA/IA-GMF-M00005/2020
 C241T C1059T C3037T C6363T C9866T C14408T A14747G G16858T A20755C G21372T A23403G G25563T

EPI_ISL_460923
 2020-05-26 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G C16308T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461227
 2020-05-26 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G C19269T A23403G G25500T GGG28881AAC G28903T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461560
 2020-05-26 2020-06-06
 United Kingdom hCoV-19/England/CAMB-1B351B/2020
 C241T C3037T C14408T A23403G G23868T G25429T GTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTC27703- G29543T

EPI_ISL_461563
 2020-05-26 2020-06-06
 United Kingdom hCoV-19/England/CAMB-1B3593/2020
 C241T C3037T A5829G C6651T C8326T A11730G C14408T C18877T C21614T A23403G G24197T G25563T T25732G C26735T

EPI_ISL_461575
 2020-05-26 2020-06-06
 United Kingdom hCoV-19/England/CAMB-1B3AB2/2020
 C241T C3037T T4149C CAG6501- A8031G A8537G C12525T C14408T A23403G G25599T GGG28881AAC C29353T

EPI_ISL_461579
 2020-05-26 2020-06-06
 United Kingdom hCoV-19/England/CAMB-1B3B64/2020
 C241T C3037T G4184A A5829G A11730G C14408T C18877T C21614T A23403G G24197T G25563T T25732G C26735T C28006T

EPI_ISL_461950
 2020-05-26 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1119F1/2020
 G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_461958
 2020-05-26 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111AB2/2020
 C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789-

EPI_ISL_464164
 2020-05-26 2020-06-11
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_066/2020
 C241T A1163T C3037T C5183T C14408T A17844T A23403G G25855T G26730T C28093T GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_466637 MT601281
 2020-05-26 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_67/2020
 C241T C3037T G4523T G13348T C14408T C15714T C18877T C22444T A23403G G25494T G25563T C26735T A27316T G28321T C28854T G29431T AAA29901-

EPI_ISL_466638 MT601282
 2020-05-26 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_69/2020
 C241T C1593T C2940T C3037T T5338C C14408T C18877T C22444T A23403G G25494T G25563T C26735T C28854T

EPI_ISL_466639 MT601283
 2020-05-26 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_70/2020
 C241T C1593T C2940T C3037T C10456T C14408T C18877T C22444T A23403G G23611A G25494T G25563T C26735T C28854T AAAAAAAAAAAAAAAA29888-

EPI_ISL_466687 MT601284
 2020-05-26 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_72/2020
 C110T C241T A1163T C3037T C9891T C13326T C14408T A23403G G25135T C26082T GGG28881AAC

EPI_ISL_466692
 2020-05-26 2020-06-11
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_071/2020
 C241T C3037T C12357T G13201T C14408T C18877T G20893T C22444T G25494T G25563T C26735T T27913A -27915ACGAACAAACTAAAATGTCTGATAATGGACCCCAAAATCAGCGAAATGCACCCCGCATTACGTTTGGT C28854T G29081T C29085T C29614T

EPI_ISL_466924
 2020-05-26 2020-06-12
 Germany hCoV-19/Germany/BAV-MVP0294/2020
 C241T C3037T C3092T C14408T G15327T A23403G G25855T G26840A C27999T

EPI_ISL_466925
 2020-05-26 2020-06-12
 Germany hCoV-19/Germany/BAV-MVP0296/2020
 C241T C3037T C3092T C14408T G15327T A23403G G26840A C27999T

EPI_ISL_469070
 2020-05-26 2020-06-17
 Sweden hCoV-19/Sweden/20-51703/2020
 C241T C1059T G1440A C1722T C3037T A11303C C12049T C14408T A23403G G24368T G25352T G25563T A27976T

EPI_ISL_471616
 2020-05-26 2020-06-22
 India hCoV-19/India/CCMB_L1510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C18877T A23403G G25563T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471617
 2020-05-26 2020-06-22
 India hCoV-19/India/CCMB_L1542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G4354A C6026T C6573T C14408T AA21550CT A23403G C25528T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471618
 2020-05-26 2020-06-22
 India hCoV-19/India/CCMB_L1551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C3634T G3692T G11083T T12494C C14408T C15324T A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471619
 2020-05-26 2020-06-22
 India hCoV-19/India/CCMB_L1554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C5700A C9693T C10815T C14408T C16626T AA21550CT A23403G GGG28881AAC G29474T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471620
 2020-05-26 2020-06-22
 India hCoV-19/India/CCMB_L1564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G124A C241T C313T C3037T C5700A C9693T C10815T C14408T C16626T A23403G C25587G C26527T C26542T GGG28881AAC G29474T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_472116
 2020-05-26 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A0503/2020
 C241T C3037T C12534T C14408T G17590T A23403G GGG28881AAC C29284T

EPI_ISL_472119
 2020-05-26 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A0530/2020
 C241T C3037T A5695G T13827C C14408T G18756T A23403G GGG28881AAC

EPI_ISL_472121
 2020-05-26 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A0600/2020
 C241T C3037T A7927T C9180T C14408T A23403G GGG28881AAC

EPI_ISL_472122
 2020-05-26 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A062E/2020
 C241T C3037T C14408T A23403G C26606T C28290T

EPI_ISL_472856
 2020-05-26 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15FDDD/2020
 AT1- C241T C829T C1059T C3037T G12769T C14408T A23403G G25563T G27415A G28371T C29546T

EPI_ISL_472873
 2020-05-26 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15FF40/2020
 C241T G419A C829T C1059T C3037T G3994A G11670A C14408T C18508T A23403G G25563T G27415A G28371T

EPI_ISL_472874
 2020-05-26 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-15FF5F/2020
 ATTAAAGGTTTATACC1- C241T C2488T C3037T C3551T T5573Y C6380T C7420T G11801A C14408T T19839C C22419Y A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_472905
 2020-05-26 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1601DD/2020
 C241T C3037T T8944C C14408T C14741T A23403G

EPI_ISL_472934
 2020-05-26 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16044D/2020
 ATTAAAGGTT1- G1440A G2891A -11075TTT G11083T G14118A C28311T G28851T

EPI_ISL_472949
 2020-05-26 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160559/2020
 A1- C140T C241T C3037T C6582T T9931C C14408T A23403G GGG28881AAC

EPI_ISL_473024
 2020-05-26 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-160BA2/2020
 ATT1- C241T G1589R C3037T G4504T C14408T G21624T A23403G G25429T G26730T C28076T C29247T G29474T

EPI_ISL_473410
 2020-05-26 2020-06-23
 United Kingdom hCoV-19/England/BIRM-6043F/2020
 C241T C2299T C3037T T3808C G3955T TCAAATTCG6329- C14408T A23403G T25663C C26936T GGG28881AAC

EPI_ISL_473415
 2020-05-26 2020-06-23
 United Kingdom hCoV-19/England/BIRM-6048A/2020
 C241T C2299T C3037T G3955T TCAAATTCG6329- C12809T C14408T A23403G T25663C C26936T GGG28881AAC

EPI_ISL_475401
 2020-05-26 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C7ADA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T C3037T C14408T A23403G C25603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475457
 2020-05-26 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CD588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1093T C3037T G7675T T8908C C14408T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475524
 2020-05-26 2020-06-23
 Sweden hCoV-19/Sweden/20-14985/2020
 C241T C3037T C12778T C14408T C22458T A23403G G25793A G28380A GGG28881AAC

EPI_ISL_476053
 2020-05-26 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20917/2020
 C241T C1059T A2161C C3037T G4904T C6402T C14408T A23403G G25563T G28321A

EPI_ISL_476056
 2020-05-26 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20920/2020
 C241T C1059T C3037T G4904T A5877R C6402T C14408T A23403G G25563T C29614T

EPI_ISL_476058
 2020-05-26 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20922/2020
 C241T C1059T C3037T G4904T C6402T C14408T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_476059
 2020-05-26 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20923/2020
 C241T C1059T C3037T G4904T C6402T C14408T A23403G G25563T

EPI_ISL_476060
 2020-05-26 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20924/2020
 C241T C1059T C3037T G4904T C6402T C14408T A23403G G25563T

EPI_ISL_477205
 2020-05-26 2020-06-29
 India hCoV-19/India/InStem_NCBS_0002/2020
 A1C TAA3CGG G8A T10G A12G CCTTCCCAGG15- C28G A30G CAACCAACTTTCGATCT33AG C241T C1218T C3037T C8917T G9479T C14408T G18170T A23403G C27110T T27384C GGG28881AAC AGCAA29673CTGTC TA29682AT

EPI_ISL_477306
 2020-05-26 2020-06-29
 United States hCoV-19/USA/MN-MDH-1217/2020
 ATTAAA1- C241T C1059T C3037T C14408T T22552C A23403G C23987T G25563T C25797T C25889T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_478384
 2020-05-26 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A05A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T C12005T C14408T A23403G -28029TA GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478385
 2020-05-26 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A05D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3078G C8247T C10507T G11335T C12005T C14408T A23403G -28029TA GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478386
 2020-05-26 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A05E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3078G C8247T C10507T G11335T C12005T C14408T A23403G -28029TA GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478387
 2020-05-26 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A064C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3774A T10561C C13372T C14408T C15324T A23403G GTTA26158- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478388
 2020-05-26 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A066A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C10507T C12005T A13712G C14408T A23403G -28029TA GGG28881AAC C29762T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478390
 2020-05-26 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A06B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T C12005T C14408T G21770T A23403G -28029TA GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479545
 2020-05-26 2020-06-30
 India hCoV-19/India/NIV-46430/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C2110T A6081G C6312A C9438T C13730T C14262T C23929T C28311T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479547
 2020-05-26 2020-06-30
 India hCoV-19/India/NIV-45071/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479593
 2020-05-26 2020-06-30
 Singapore hCoV-19/Singapore/515/2020
 C4893T C6310A C6312A G11083T A11228G C13730T C19524T C23185T C23929T C27143T C28311T AAAAAAAAAAAA29892-

EPI_ISL_481148
 2020-05-26 2020-07-02
 India hCoV-19/India/ILSCV31447/2020
 C241T C2836T A2903G A2909C A7448G G11083T C12025T C14408T C18877T G21724T C22444T A23403G G25563T C26735T G27147T C28854T

EPI_ISL_481149
 2020-05-26 2020-07-02
 India hCoV-19/India/ILSCV31650/2020
 C241T C3037T G4559T G8371T C12885T C14408T G16912T A23403G C27213T G28048T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_481150
 2020-05-26 2020-07-02
 India hCoV-19/India/ILSCV31684/2020
 A2705G C8782T G14500T C20719T G22468T C24358A T28144C G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481151
 2020-05-26 2020-07-02
 India hCoV-19/India/ILSCV31693/2020
 A2705G A3603G C8782T G14500T C21721T G22468T C24358A T27222C T28144C G28878A G29742A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_481152
 2020-05-26 2020-07-02
 India hCoV-19/India/ILSCV31694/2020
 A2705G A3603G C8782T G14500T C21721T G22468T C24358A T27222C T28144C G28878A G29742A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_482963
 2020-05-26 2020-07-06
 United States hCoV-19/USA/MN-MDH-1242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C100T C241T C1059T C1812T C3037T C6026T C10319T G13564T C13665T C14408T A23403G G25563T C27964T C28531T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_482964
 2020-05-26 2020-07-06
 United States hCoV-19/USA/MN-MDH-1243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_487571
 2020-05-26 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12B47B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T C7765T G10097A A12180G C14408T C19524T C21575T C23043T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488844
 2020-05-26 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2005T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488865
 2020-05-26 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2005T C3037T G11083K C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488867
 2020-05-26 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2005T C3037T C14408T A23403G GGG28881AAC A29761R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489840 EPI_ISL_491036
 2020-05-26 2020-07-14
 Romania hCoV-19/Romania/ROSV_10626/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G1439T C3037T T9697C T10495C G10618A A12875G C14322T C14408T T17137C A20268G A23403G A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_490788
 2020-05-26 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165CAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A489G C3037T T5465C G6387A C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC

EPI_ISL_491949
 2020-05-26 2020-07-17
 Ecuador hCoV-19/Ecuador/51908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C15952T A23403G T24847Y GGG28881AAC C29098T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_491999
 2020-05-26 2020-07-18
 Oman hCoV-19/Oman/205038885/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C9700T G10265A C14408T C16293T A23403G C25452T GGG28881AAC G29861A A29863T AA29865TG G29868A AA29872TT AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875GGG

EPI_ISL_492000
 2020-05-26 2020-07-18
 Oman hCoV-19/Oman/205038896/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G10265A C14408T C16293T A23403G C27005T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_492001
 2020-05-26 2020-07-18
 Oman hCoV-19/Oman/205038906/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T A23403G C27005T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_493488
 2020-05-26 2020-07-21
 United Kingdom hCoV-19/England/NORT-29AF0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A513G C3037T T9139C C14408T A15580G A21137G C21691T A23403G A26197T T26312G C27630T G28436T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493489
 2020-05-26 2020-07-21
 United Kingdom hCoV-19/England/NORT-29AFFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493490
 2020-05-26 2020-07-21
 United Kingdom hCoV-19/England/NORT-29B017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6133G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493964
 2020-05-26 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB6641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3488A C14408T C15324T T15669C C18904T A23403G G25606T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493965
 2020-05-26 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB6643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T T15669C C18904T A23403G G25606T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493968
 2020-05-26 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB6646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T T15669C C18904T A23403G G25606T C26895T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493969
 2020-05-26 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB6647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T T15669C C18904T A23403G G25606T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495103
 2020-05-26 2020-07-22
 United Kingdom hCoV-19/England/BRIS-133461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495964 MT834210
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1538/2020
 AT1- C2070T G8179A C12710A C17747T A17858G C18060T G22319T A26566G T28144C AAAAAAAAAAAAAAAA29888-

EPI_ISL_495965 MT834289
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1539/2020
 ATT1- C3037T C8782T C14408T G16968T A17858G C18060T C24240A C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495966 MT834293
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1540/2020
 A1- C241T C3037T C6285T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495968 MT834318
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1542/2020
 ATTAAAGGTTT1- G354A C2070T C8782T C17747T A17858G C18060T G22319T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495970 MT834091
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1544/2020
 ATTAAAGG1- C241T C3037T C3992T G4510T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495972 MT834008
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1546/2020
 ATTAAAGGTTTAT1- C241T C3037T C3992T G4510T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495974 MT834020
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1548/2020
 ATTAAAGGTTTATA1- C241T C3037T C3992T G4510T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495977 MT833965
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1551/2020
 ATTAAAGGTTTATAC1- C241T C379A C1059T C3037T G6036A C11208T G14008T C14408T A23403G C24719A G25456T G25563T C26333T C26753A G27593A C28791T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495978 MT834007
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1552/2020
 ATTAAAGGTTTAT1- C241T C1450T C3037T C12885T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495979 MT833981
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1553/2020
 AT1- C241T C900T C3037T C5974T C14408T C15933T G16968T C18747T T19839C G20991T A23403G G27506T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_495980 MT834280
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1554/2020
 A1- C241T A2161G C2455T C3037T C14408T C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_495981 MT834263
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1555/2020
 A1- C241T A2161G C2455T C3037T C14408T C16376T C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_495982 MT834307
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1556/2020
 AT1- C241T C3037T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_495983 MT834146
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1557/2020
 A1- C241T C3037T C6445T C14216T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_495984 MT834195
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1558/2020
 AT1- C241T C3037T C14408T C15933T T19839C A23403G T27384C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_495985 MT834072
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1559/2020
 A1- C241T C3037T C14408T C15933T C16954T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_495986 MT834129
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1560/2020
 ATTAAAGGTTTAT1- C241T C3037T A4070T C14408T C15933T G16968T T19839C A23403G C24863T GGG28881AAC C29259T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495987 MT833999
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1561/2020
 AT1- C241T C2110T C2113T C3037T G4180A C6445T C14216T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_495988 MT834038
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1562/2020
 ATT1- C241T C398T C1059T C3037T C7164T C9996T T11313G C14408T A23403G A24820T G25563T A29403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495989 MT834285
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1563/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495991 MT834272
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1565/2020
 AT1- C241T C3037T A4197G C14408T G16813A A23403G G24368C T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_495993 MT834121
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1567/2020
 ATTAAAGGTT1- C241T A2127G C3037T C14408T C15933T G16968T T19839C G21901A G23195A A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495996 MT834182
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1570/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T C16954T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495997 MT833978
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1571/2020
 AT1- C241T A2127G C3037T C3397T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495998 MT834288
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1572/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495999 MT834077
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1573/2020
 ATT1- C241T C1060T C3037T C14408T T19839C A23403G C28256T G28314A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496000 MT833985
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1574/2020
 ATTAAAG1- C241T C3037T C6525T C14408T C15763T C15933T G16968T T19839C A21717T T23332C A23403G G25922T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496001 MT834161
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1575/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T G16968T G18332A T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496002 MT834117
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1576/2020
 ATTAAAGGTTT1- C241T G343T G970A C3037T C9565T C14408T C15933T G16968T T19839C A23403G C25587T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_496003 MT834176
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1577/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496004 MT834216
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1578/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_496005 MT834019
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1579/2020
 ATTAAAGGTTT1- C241T C3037T A8224G C14408T G16968T T19839C A23403G G24102T G25647T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496006 MT834005
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1580/2020
 ATTAAAGGTT1- C241T C3037T C11824T C13860T C14408T C15933T G16968T T19839C A23403G GAT27382CTC G28048T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496007 MT834043
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1581/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C8782T C14408T C16376T C18877T A23403G G25563T G25907T A28458T C28854T C29451T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496008 MT834147
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1582/2020
 ATTAAAGGTTTATA1- C241T C3037T G6404T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496009 MT833962
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1583/2020
 AT1- C241T C3037T C3912T C6402T C6525T C14408T C15763T C15933T G16968T T19839C A21717T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_496011 MT834287
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1585/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T T19839C A23403G T27384C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496012 MT834137
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1586/2020
 AT1- C241T C3037T C14408T C15933T T19839C A23403G T27384C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_496013 MT833964
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1587/2020
 AT1- C241T A2127G C3037T C3397T C6016T C14408T C15933T G16968T T19839C A23403G C26681T T27210C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_496014 MT834206
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1588/2020
 ATTAAAGG1- C241T A2161G C3037T C4993T G11083T G14335T C14408T A15593G C16376T C18877T A23403G G24933T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496016 MT834032
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1590/2020
 AT1- C241T A2161G C3037T C4993T G11083T G14335T C14408T A15593G C16376T C18877T A23403G G24933T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496018 MT834243
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1592/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496021 MT834144
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1595/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496022
 2020-05-26 2020-07-24
 United States hCoV-19/USA/WA-S1596/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T G16968T C19688T T19839C A23403G G27676T GGG28881AAC G29764T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496023 MT834235
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1597/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496024 MT834174
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1598/2020
 AT1- C241T C3037T C9430T C14408T C15933T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496025 MT834030
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1599/2020
 AT1- C241T C3037T C7195T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29719T C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_496027 MT834120
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1601/2020
 ATTAAAGGTTTAT1- C3037T C14408T C14724T C15933T G16968T C18306T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_496028 MT834153
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1602/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G26428T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496029 MT834198
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1603/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496031 MT834180
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1605/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_496032 MT834100
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1606/2020
 ATT1- C241T C3037T G4510T C11003T C14408T C15933T T19839C T22690C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496034 MT834047
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1608/2020
 AT1- C241T C3037T G3345T C14408T C15933T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_496035
 2020-05-26 2020-07-24
 United States hCoV-19/USA/WA-S1609/2020
 ATT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496036 MT834203
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1610/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_496037 MT834092
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1611/2020
 ATTAAAG1- C241T G343T G970A C3037T C9565T C14408T C15933T G16968T T19839C A23403G C25587T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_496038 MT834041
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1612/2020
 ATTAAAGGTTTAT1- C241T G343T C3037T C9565T C14408T C15933T A16166G G16968T T19839C A23403G C25587T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496039 MT833992
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1613/2020
 AT1- C241T G343T G970A C3037T C9565T C14408T C15933T G16968T T19839C A23403G C25587T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_496040 MT834114
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1614/2020
 ATTAAAGGTTTAT1- C241T C3037T G4510T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496044 MT834302
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1618/2020
 ATTAAAG1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496066 MT834350
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1640/2020
 ATTAAAGGTTTATACC1- C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496067 MT834338
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1641/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C22482T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496074 MT834355
 2020-05-26 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1648/2020
 ATTAAAGGTTTAT1- C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496523
 2020-05-26 2020-07-24
 India hCoV-19/India/BJMC_6184/2020
 ATTA1- A29- C241T T1100A C3037T C3634T A5641G C14408T C15324T C19862T A23403G T28078C

EPI_ISL_496533
 2020-05-26 2020-07-24
 India hCoV-19/India/AFMC_5868/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C28- C241T GTCATGTTA510- C3037T G8371T C14408T G16912T C17410T C20325T A23403G GGG28881AAC

EPI_ISL_496552
 2020-05-26 2020-07-24
 India hCoV-19/India/BJMC_6185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C313T C875T C3037T C5700A C7093T C14408T A23403G GGG28881AAC G29477T

EPI_ISL_497880
 2020-05-26 2020-07-25
 India hCoV-19/India/AFMC_5897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C190T C774- C5512T C6312A C6385T C7401T C9803- G11083T C13730T A19676G C23929T T27810C C28311T

EPI_ISL_501021
 2020-05-26 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106F66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T T17682C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501164
 2020-05-26 2020-07-30
 United States hCoV-19/USA/WA-UW-9819/2020
 ATTAAAGGTTTATAC1- TCCC18AGGA C241T C1059T C3037T T3733A C5822T T8883C TT8885AA T12181C AGG13512TTA TA14222GC C14225T C14408T TG17178DT G17182A T21146A A23403G G25563T TG29867AA C29870A

EPI_ISL_507278
 2020-05-26 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII17536S/2020
 ATTAAAGGTTTATAC1- C241T C3037T A8887G C14408T A20268G A23403G G28842T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507279
 2020-05-26 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII17574S/2020
 C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_508176
 2020-05-26 2020-08-04
 India hCoV-19/India/AR29/2020
 ATTAAAGG1- A12G C241T T1947C C3037T C10725A C14408T C18576T C18877T C22444T A23403G G25563T C26735T C28854T G29868A

EPI_ISL_508305
 2020-05-26 2020-08-04
 India hCoV-19/India/IB27/2020
 C241T C3037T C8917T G9389A C14408T A23403G C23917A GGG28881AAC G29868A

EPI_ISL_508434
 2020-05-26 2020-08-04
 India hCoV-19/India/MW30/2020
 ATTAAAGGTTTATACCTTC1- T25G C8782T C14790T G19962T G22468T T28144C G28878A T29023A C29614T G29742A G29868A

EPI_ISL_508463
 2020-05-26 2020-08-04
 India hCoV-19/India/S73/2020
 C241T C313T C3037T G4205A C4824T T4915C C5700A C12295T C14408T T21880C A23403G G26230T C26447T C26801T G27703T GGG28881AAC G29868A

EPI_ISL_508468
 2020-05-26 2020-08-04
 India hCoV-19/India/S78/2020
 A1- C241T C1758T C3037T C3634T C11345T C14408T C15324T A23403G G29868A

EPI_ISL_508471
 2020-05-26 2020-08-04
 India hCoV-19/India/S81/2020
 ATTAAA1- C241T C313T G376A C3037T C5700A C8660T G11083T C14408T G18948T A23403G G25785T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508475
 2020-05-26 2020-08-04
 India hCoV-19/India/S86/2020
 ATTA1- C241T C3037T A3546G C3634T A5641G G10266A C14408T C15324T C19862T A23403G T28078C G29764T G29868A

EPI_ISL_509136
 2020-05-26 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G208T C241T C1059T C3037T T3312C C7164T A10323G G13900A C14408T T21473C C22949T A23403G G25563T

EPI_ISL_509137
 2020-05-26 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0434/2020
 ATTA1- G208T C241T C1059T C3037T T3312C C7164T A10323G G13900A C14408T T21473C C22949T A23403G G25563T

EPI_ISL_509454 MT827216
 2020-05-26 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0050/2020
 C241T C1059T C3037T C13487T C14408T C16260T C19488T A23403G G25563T G26690T C28821A T29858C G29861A A29889T

EPI_ISL_509455 MT827217
 2020-05-26 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C3141A C12025T G13930A C14408T C17766T A23403G G25563T C26625T

EPI_ISL_509456 MT827218
 2020-05-26 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0052/2020
 ATT1- C241T C775T C1059T C3037T C14408T A23403G G25563T C27923T G28975T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509457 MT827219
 2020-05-26 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C775T C1059T C3037T C14408T A23403G G25563T C27923T G28975T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_509458 MT827220
 2020-05-26 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0054/2020
 AT1- C241T C775T C1059T C3037T C14408T A23403G G25563T C27923T G28975T AAAAAAAAA29895-

EPI_ISL_509459 MT827221
 2020-05-26 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0055/2020
 ATTAAAGG1- C21T C241T C775T C1059T C3037T C14408T A23403G G25563T C27923T G28975T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_509460 MT827222
 2020-05-26 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C775T C1059T C3037T C14408T A23403G G25563T G26834T A27660C C27923T G28975T T29856C T29859A G29862A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_509461 MT827223
 2020-05-26 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0057/2020
 ATTAAAGGT1- C241T C775T C1059T C3037T C14408T C21575T A23403G G25563T C27923T G28975T A29901G

EPI_ISL_509465 MT827227
 2020-05-26 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C775T C1059T C3037T C14408T A23403G G25563T C27923T G28975T AAAA29882CGCT

EPI_ISL_509466 MT827228
 2020-05-26 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C775T C1059T C3037T C14408T A23403G G25563T C27923T G28975T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509467 MT827229
 2020-05-26 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C775T C1059T C3037T C6720T C14408T A23403G G25563T C27923T G28975T

EPI_ISL_509486 MT827248
 2020-05-26 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0082/2020
 T490A C1188T T1651C G2284A C3177T C6040T C8782T G12256T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509489 MT827251
 2020-05-26 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0085/2020
 ATTA1- C241T C1059T C3037T C14408T C14599T C16260T A23403G G25563T G25720T G26428T C28821A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509490 MT827252
 2020-05-26 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T C14599T C16260T A23403G G25563T G25720T G26428T C28821A

EPI_ISL_509491 MT827253
 2020-05-26 2020-07-31
 United States SARS-CoV-2/human/USA/MD-MDH-0087/2020
 C241T C1059T C3037T G6865T C14408T C14599T C16260T A23403G G25563T G25720T G26428T C28821A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509824 MT846508
 2020-05-26 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T G20626T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509825 MT846509
 2020-05-26 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510520
 2020-05-26 2020-08-06
 Spain hCoV-19/Spain/COV005502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C583T C3037T G5230T C14408T C19524T A20268G A23403G C28854T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_510648
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2312/2020
 AT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510649
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2313/2020
 AT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510650
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C26858T G29179T G29779T

EPI_ISL_510651
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2315/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510653
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2317/2020
 C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510654
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2318/2020
 C241T C1059T C3037T C11916T C14408T C16650T A20675T T21823C A23403G G25563T G29179T G29779T

EPI_ISL_510655
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2319/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T T21823C A23403G G25563T G29179T G29779T

EPI_ISL_510657
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2321/2020
 ATTAAAG1- C241T C1059T T1831C C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510658
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2322/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C14408T C16650T G17278T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_510660
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2324/2020
 ATTAAAG1- C241T C1059T T1831C C3037T C6361T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_510661
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2325/2020
 ATTAAAGGTTTA1- C241T C1059T T1831C C3037T C11916T C14408T C16650T C17491T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510662
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2326/2020
 ATTAAAGG1- C241T C1059T T1831C C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_510663
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2327/2020
 ATTAAAGGTTTAT1- C241T C1059T T1831C C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_510664
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2328/2020
 ATTAAAGGTTTA1- C241T C1059T T1831C C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_510665
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C241T C1059T C3037T C11916T C14408T C16650T G17058T A20675T A23403G G25563T G29179T G29779T AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_510669
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2333/2020
 ATTAAA1- C241T C1059T T1831C C3037T C6361T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_510670
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2334/2020
 ATTAAAG1- C241T C1059T T1831C C3037T C9712T C11916T C14408T C16650T C17491T A20675T A23403G G25563T G28209T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_510677
 2020-05-26 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2341/2020
 ATTAAAGGTTTATA1- C241T C1059T T1831C C3037T A9102G C11916T C14408T C16650T C17491T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_511899
 2020-05-26 2020-08-10
 India hCoV-19/India/S83/2020
 A1- C241T C823T A1269G C3037T T6745C G7798T C14408T A18802C G21073A A23403G G26951T G29868A

EPI_ISL_513190
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH850/2020
 C241T C3037T C10647T C14408T C22444T C26735T C28854T

EPI_ISL_513191
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH851/2020
 C241T C3037T C10647T C14408T C18877T C22444T G23401T A23403G G25563T C26735T C28854T

EPI_ISL_513193
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH857/2020
 C241T C3037T C14408T C22444T G22936A A23403G G25563T C26735T C28854T

EPI_ISL_513194
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH858/2020
 C241T A259G G845T C3037T C8293T C14408T C18877T G25563T C26735T

EPI_ISL_513196
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH860/2020
 C241T C3037T C14408T C15352T A23403G GGG28881AAC

EPI_ISL_513197
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH862/2020
 C241T A13456G C14408T C18877T G19006T A23403G G25563T C26735T

EPI_ISL_513199
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH896/2020
 C241T C3037T C6990T C8092T C14408T C18877T A23403G G24193T G25563T C26735T C28887T C29754T

EPI_ISL_513200
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH898/2020
 C241T C14408T C18526T G25563T C26735T

EPI_ISL_513201
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH937/2020
 C241T C3037T C14408T C18526T A23403G G25563T C26735T

EPI_ISL_513202
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH938/2020
 C241T C3037T C14408T C22444T G23401T A23403G G25563T C26735T C28854T

EPI_ISL_513203
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH941/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513204
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH947/2020
 C241T C3037T C6990T C8092T T14313C C14408T G24193T G25563T C26735T C28887T

EPI_ISL_513207
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH957/2020
 C241T C3037T C4777T G5668T C11339T C14408T C16338T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513208
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH958/2020
 C241T C3037T C4777T G5668T C11339T C14408T C16338T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513210
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH960/2020
 C241T C3037T C14408T G25563T C26735T

EPI_ISL_513213
 2020-05-26 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH975/2020
 C241T C3037T C10647T C14408T C18877T C22444T G23401T A23403G G25563T C26735T C28854T -29867CCACAACACGACAGCATC

EPI_ISL_513729 MW035958
 2020-05-26 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2179/2020
 AT1- A6M C241T C1059T A1629C C3037T C3602T G12793T C14408T C16762T A23403G G25563T G25647T C28708T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513730
 2020-05-26 2020-08-13
 United States hCoV-19/USA/CA-CZB-2180/2020
 ATTAAAGGTTTATACC1- C241T C3037T G3404R T4711C C4897T A6709G T10076C C14408T C18570T A18945G G18972T A23403G GGG28881AAC C29025T CACCGAGGCCACGCGGAGTACGATCGAGTGTACA29730-

EPI_ISL_513731 MW035926
 2020-05-26 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2181/2020
 AT1- C241T C3037T T4711C C4897T A6709G T10076C C14408T C18570T A18945G G18972T A23403G GGG28881AAC C29025T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29730- CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_513732
 2020-05-26 2020-08-13
 United States hCoV-19/USA/CA-CZB-2182/2020
 ATTAAAGGTTTA1- C241T C1853Y C3037T T4711C C4897T A6709G T10076C C14408T C18570T A18945G G18972T C21621Y A23403G GGG28881AAC C29025T CACCGAGGCCACGCGGAGTACGATCGAGTGTACA29730-

EPI_ISL_513733
 2020-05-26 2020-08-13
 United States hCoV-19/USA/CA-CZB-2183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1627T C3037T T4711C C4897T A6709G T10076C C14408T G18255T C18570T A18945G G18972T C22264Y T22619Y A23403G G23501R C26681Y GGG28881AAC C29025T CACCGAGGCCACGCGGAGTACGATCGAGTGTACA29730- GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_513734 MW035923
 2020-05-26 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C21205T G21255C A23403G GGG28881AAC G28960T

EPI_ISL_513737 MW035946
 2020-05-26 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2188/2020
 A1- C241T C1059T C3037T C14408T A23403G T25548A G25563T C26198T G29384T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513738
 2020-05-26 2020-08-13
 United States hCoV-19/USA/CA-CZB-2189/2020
 ATTAAAGGTT1- C241T C1059T C3037T C3602T C14408T C16762T T16892Y C17119T A20129M A23403G G25563T T27380Y A27383W

EPI_ISL_513739 MW035971
 2020-05-26 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C3602T C14408T C16762T A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513740 MW035973
 2020-05-26 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2191/2020
 A12W C241T C1059T C3037T C3276Y C3602T C14408T C16762T C21846Y A23403G G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514161 MT890294
 2020-05-26 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0815/2020
 AT1- C241T C593T C1059T C3037T C6628T T9167C C14408T G16636T C16767T C16887T A23403G C23520T G25471C G25563T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_515447
 2020-05-26 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0193/2020
 ATT1- C241T C539T C1059T C3037T A7921G C14408T G16741T C22498T A23403G G25563T

EPI_ISL_515448
 2020-05-26 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0194/2020
 AT1- C241T C3037T C10626T C14408T C18877T A23403G G25563T G25855T

EPI_ISL_515449
 2020-05-26 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0195/2020
 ATTAAA1- C241T C539T C1059T C3037T A7921G C14408T G16741T C22498T A23403G G25563T

EPI_ISL_515450
 2020-05-26 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0196/2020
 ATTAAA1- C241T C3037T C14408T G19969A A20268G A23403G C28854T G29000T

EPI_ISL_515920
 2020-05-26 2020-08-20
 United States hCoV-19/USA/CA-CDPH028/2020
 ATT1- C241T C379A C1059T T1417C C3037T G7675K C14408T G22017T A23403G G25563T G29477T C29769T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516977
 2020-05-26 2020-08-24
 India hCoV-19/India/UP-NBRI-N49-TEI217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2836T C3037T C14408T C18877T C19170T C21575T C22444T G23126T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522826 MT843287
 2020-05-26 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C775T C1059T C3037T C14408T A23403G G25563T C27923T G28975T

EPI_ISL_522827 MT843288
 2020-05-26 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0091/2020
 C241T C775T C1059T C3037T C14408T A23403G G25563T C27923T G28975T

EPI_ISL_522829 MT843290
 2020-05-26 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0093/2020
 ATTAA1- T490A C1188T G2284A C3177T C6040T C8782T G12256T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_522830 MT843291
 2020-05-26 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- T490A G596T C1188T G2284A C3177T C6040T C8782T G12256T G12478A C18166T T18736C C24034T T26729C C27686A T27694A G28077C T28144C C28896G A29700G G29868-

EPI_ISL_522831 MT843292
 2020-05-26 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- T490A C1188T G2284A C3177T C6040T C8782T G12256T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_522832 MT843293
 2020-05-26 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- T490A C1188T G2284A C3177T C6040T C8782T G12256T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G

EPI_ISL_522846 MT843307
 2020-05-26 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0112/2020
 ATT1- C241T C1059T C3037T C14408T A23403G G25563T G27993A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_522849 MT843310
 2020-05-26 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0116/2020
 ATTAAAGGTT1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T C25613T G27240T

EPI_ISL_522850 MT843311
 2020-05-26 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0117/2020
 A1- C241T C1059T C3037T T8601C C10279T C13072T C14408T C18747T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_522851 MT843312
 2020-05-26 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0118/2020
 A4- C241T C1059T C3037T C14408T C14649T A23403G G24751T C25002T G25563T G27621A

EPI_ISL_522852 MT843313
 2020-05-26 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0119/2020
 ATTA1- C241T C1059T C3037T C14408T C14649T A23403G G24751T A25271G G25563T G27621A

EPI_ISL_523133
 2020-05-26 2020-08-26
 Netherlands hCoV-19/Netherlands/FL-EMC-24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C3315T A10323G C12115T C14408T T15696G A23403G C25521T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523140
 2020-05-26 2020-08-26
 Netherlands hCoV-19/Netherlands/FR-EMC-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6741A C14408T A23083G A23403G C25416T G25444T G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523186
 2020-05-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C15981T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523187
 2020-05-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C15981T A23403G G25563T G27987T C28695T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523188
 2020-05-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C15981T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523405
 2020-05-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NH-EMC-36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G G25500T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523445
 2020-05-26 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523446
 2020-05-26 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T A8946G C11109T C12213T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523528
 2020-05-26 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T G11557T C14408T C21811T A23403G C24130T G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524087
 2020-05-26 2020-08-27
 United States hCoV-19/USA/UT-08288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C10702T C11379T C13667T C14408T G21204T A22320G A23403G G25563T C27964T G28373T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524096
 2020-05-26 2020-08-27
 United States hCoV-19/USA/UT-08299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G24794T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524124
 2020-05-26 2020-08-27
 United States hCoV-19/USA/UT-08333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2832G C3037T G3518T C13536T C14408T T16185C A23403G T29672C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524149
 2020-05-26 2020-08-27
 United States hCoV-19/USA/UT-08366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C6629T C11379T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524161
 2020-05-26 2020-08-27
 United States hCoV-19/USA/UT-08378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T A454G C1059T C3037T C4878T C11750T C14408T T17772C G21099T A22525G A23403G G25563T C27964T C29272T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524171
 2020-05-26 2020-08-27
 United States hCoV-19/USA/UT-08389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6512C C12068T C14408T C18877T A23403G G25563T G26951T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524180
 2020-05-26 2020-08-27
 United States hCoV-19/USA/UT-08400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C6629T C11379T C14408T C21595T A22320G A23403G G24193T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524209
 2020-05-26 2020-08-27
 United States hCoV-19/USA/UT-08433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3518T C13536T C14408T A23403G G25429T C28227T T29672C G29717A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524242
 2020-05-26 2020-08-27
 United States hCoV-19/USA/UT-08471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T G3563T C6541T C11379T C14408T C15026T T18584C A22320G A23403G A25165T G25563T C27964T G28373T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524313
 2020-05-26 2020-08-27
 United States hCoV-19/USA/UT-08554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G25563T C27964T C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524345
 2020-05-26 2020-08-27
 United States hCoV-19/USA/UT-08598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T G4300T G5739A C8139T C14119T C14408T A23403G G25563T A25864G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524357
 2020-05-26 2020-08-27
 United States hCoV-19/USA/UT-08616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A22351G A23403G G25563T C27964T G28373T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524377
 2020-05-26 2020-08-28
 United States hCoV-19/USA/UT-08642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T409C T833C C1059T C3037T G4300T G5739A C8139T C14408T A23403G G25563T A25864G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524378
 2020-05-26 2020-08-28
 United States hCoV-19/USA/UT-08643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T G3563T G4720A C6541T C11379T C14408T C15026T C17004T A22320G A23403G G25563T C27964T G28373T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524394
 2020-05-26 2020-08-28
 United States hCoV-19/USA/UT-08669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T T2698C C3037T C6541T C11379T A14111G C14408T C16111T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524400
 2020-05-26 2020-08-28
 United States hCoV-19/USA/UT-08677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G25563T C27964T C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524414
 2020-05-26 2020-08-28
 United States hCoV-19/USA/UT-08696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G25563T C27964T T28046C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524778
 2020-05-26 2020-08-28
 United States hCoV-19/USA/UT-08721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A C19145T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524828
 2020-05-26 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524985
 2020-05-26 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C6629T C11379T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525002
 2020-05-26 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1178T G2117T C2401T C2509T C3037T C8917T C13994T C14408T C17733T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525014
 2020-05-26 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2527T C3037T C4780T C7428T C14408T A20268G C20719T G22813A A23403G C26527T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525150
 2020-05-26 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C14408T G15908A C19145T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530108
 2020-05-26 2020-09-10
 Spain hCoV-19/Spain/MD-R62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2556G C3037T C3045T C14408T A20268G A23403G ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534861
 2020-05-26 2020-09-14
 United Kingdom hCoV-19/England/OXON-B34C4/2020
 C241T C3037T T6283C C14408T G19656T T19839C A23403G C26681T GGG28881AAC

EPI_ISL_534932
 2020-05-26 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4144/2020
 C241T C3037T T6283C C14408T T19839C A23403G C26681T GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_534941
 2020-05-26 2020-09-14
 United Kingdom hCoV-19/England/OXON-B4232/2020
 ATTAAAGGTTTA1- C241T C3037T C6525T C14408T T18398C C21711T A22368G C22482A A23403G T24274C G24781T C25344T GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_535061
 2020-05-26 2020-09-14
 United Kingdom hCoV-19/England/SHEF-C64DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535077
 2020-05-26 2020-09-14
 United Kingdom hCoV-19/England/SHEF-CC96F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12145G C14408T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536413
 2020-05-26 2020-09-16
 Singapore hCoV-19/Singapore/872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C6310A C6312A T8423W A9419G G11083T C13730T A15979G C19524T C23929T C25721T C28311T AAAAAAAAAAAA29892-

EPI_ISL_537270
 2020-05-26 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B3018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543935
 2020-05-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-3015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A5011C C14408T G17658T A23403G G25563T C26224T C27434T C28893T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545256
 2020-05-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-2346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545266
 2020-05-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-2366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8105T C8123T C14408T A23403G G24812T C24919T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545290
 2020-05-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-2403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C20368T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545303
 2020-05-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-2422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T G7798T T11134C C14408T A18535G C19011T G20275T A23403G G25819A C26542A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545306
 2020-05-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-2425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5884T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559385
 2020-05-26 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4990AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G A24062G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559398
 2020-05-26 2020-09-28
 United Kingdom hCoV-19/England/ALDP-499AFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C9073T G10097A C13536T C14408T G22199T A23403G C23731T T26715K G26720R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559414
 2020-05-26 2020-09-28
 United Kingdom hCoV-19/England/ALDP-499DC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC G29392A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559433
 2020-05-26 2020-09-28
 United Kingdom hCoV-19/England/ALDP-499B9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T G9473A G10097A A10951G C14408T C14605T G17721T C18032T C21614T TTA21991- A23403G C23731T G25437C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568690
 2020-05-26 2020-10-02
 Indonesia hCoV-19/Indonesia/JK-EIJK-39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G25323T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT664107
 2020-05-26 2020-06-25
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_071/2020
 C241T C3037T C12357T G13201T C14408T C18877T G20893T C22444T G25494T G25563T C26735T C28115T C28854T G29081T C29085T C29614T

EPI_ISL_452931
 2020-05-27 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0A4C/2020
 C241T C3037T G8322A C14408T C20611T A23403G C27689T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29730-

EPI_ISL_452950
 2020-05-27 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0BD0/2020
 C241T C3037T C14408T C19140T A23403G GGG28881AAC

EPI_ISL_452955
 2020-05-27 2020-05-27
 United Kingdom hCoV-19/England/CAMB-1B0C64/2020
 C241T G2769T C3037T C11653T C14408T C22286T A23403G GGG28881AAC

EPI_ISL_461483 MT576042
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC154/2020
 C241T C3037T C3634T C14408T C15324T A23403G

EPI_ISL_461484 MT576044
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC155/2020
 C241T C2836T C3037T T7232G C7732T C14408T C18555T C18877T G19086T C22444T C23277T A23403G G25563T C26735T C28854T

EPI_ISL_461485 MT576043
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC156/2020
 C241T C3037T C14408T G16078A C18877T C22444T G23282T G23311T A23403G G25019T G25563T C26607T C26735T C28854T

EPI_ISL_461486 MT576045
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC157a/2020
 C241T C3037T C14408T G20006A A23403G A29874G

EPI_ISL_461487 MT576046
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC157b/2020
 C241T C3037T C3634T C14408T C15324T G20006A A23403G A29874G

EPI_ISL_461488 MT594112
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC158/2020
 C241T C2836T C3037T A4903G C14408T C18877T C22444T A23403G C23987T G25563T C25961T G26116T C26735T C28854T

EPI_ISL_461489 MT576060
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC159a/2020
 C241T C1102T C2836T C3037T C14408T C18877T C22444T A23403G G25500A G25563T C26735T C28854T

EPI_ISL_461490 MT576053
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC159b/2020
 C241T C3037T C14408T C15324T C22444T A23403G

EPI_ISL_461491 MT576033
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC160a/2020
 C241T C3037T C14408T C15324T C18877T T22384C C22444T A23403G C26735T C28854T

EPI_ISL_461492 MT576031
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC160b/2020
 G219T C241T C2836T C3037T C3634T C11747T C14408T A23403G G25563T

EPI_ISL_461493 MT576032
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC161a/2020
 A22T C241T C3037T C3634T C14408T C15324T A23403G C28854T

EPI_ISL_461494 MT576040
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC161b/2020
 A22T G219T C241T C3037T C3634T C14408T A23403G G25563T

EPI_ISL_461495 MT576048
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC162a/2020
 C241T C3037T A13859G C14408T G16078A G18040T C18877T C22444T G23311T A23403G CC25162AA G25563T C25904T C26735T G28703T C28854T

EPI_ISL_461496 MT576047
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC162b/2020
 C241T C3037T C3634T C14408T C15324T A23403G C28854T

EPI_ISL_461497 MT576041
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC163a/2020
 C241T C3037T G4067A G5572T C8460A C14408T A14673G A23403G

EPI_ISL_461498 MT576049
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC163b/2020
 C241T C3037T G4067A G5572T C8460A C14408T A14673G A23403G C27213T

EPI_ISL_461499 MT576057
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC164/2020
 C241T C706A C2836T C3037T C9857T C14408T C18877T T19215C C22444T A23403G G25563T C26735T C28854T C29171T

EPI_ISL_461500 MT576061
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC165/2020
 C241T C2836T C3037T C14408T C18877T G22081T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_461501 MT576056
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC166a/2020
 C222T C241T C2836T C3037T T11457C C12049T C14408T C18457T C18877T C22444T A23403G G25563T C26735T C28045T C28854T C29236T

EPI_ISL_461502 MT576058
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC166b/2020
 C222T C241T C2836T C3037T T11457C C14408T C18457T C18877T C22444T A23403G G25563T C26735T C28854T C29236T

EPI_ISL_461503 MT576059
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC167a/2020
 C241T C3037T C14408T C15324T C22444T A23403G C28854T

EPI_ISL_461504 MT576055
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC167b/2020
 G219T C241T C2836T C3037T C3634T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_461505 MT576052
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC168a/2020
 C241T C3037T C14408T A23403G G28851T

EPI_ISL_461506 MT576054
 2020-05-27 2020-06-06
 India SARS-CoV-2/human/IND/GBRC168b/2020
 C241T C2836T C3037T C14408T C15324T C18877T A23403G G25563T C28854T

EPI_ISL_461561
 2020-05-27 2020-06-06
 United Kingdom hCoV-19/England/CAMB-1B3557/2020
 C241T C2110T C3037T C13138T C14408T A16607G A23403G GGG28881AAC

EPI_ISL_461571
 2020-05-27 2020-06-06
 United Kingdom hCoV-19/England/CAMB-1B3A76/2020
 C241T C2110T C3037T C14408T A16607G A23403G GGG28881AAC

EPI_ISL_461572
 2020-05-27 2020-06-06
 United Kingdom hCoV-19/England/CAMB-1B3A85/2020
 C241T C3037T G8612T C14408T G21255A A23403G GGG28881AAC G29705T

EPI_ISL_461574
 2020-05-27 2020-06-06
 United Kingdom hCoV-19/England/CAMB-1B3AA3/2020
 ATG1605- G4975A T15939C A29771G

EPI_ISL_461580
 2020-05-27 2020-06-06
 United Kingdom hCoV-19/England/CAMB-1B3B73/2020
 C241T C3037T C3373A C11195T C14408T C15216T A23403G C28775T GGG28881AAC

EPI_ISL_461581
 2020-05-27 2020-06-06
 United Kingdom hCoV-19/England/CAMB-1B3B82/2020
 C241T C3037T T4149C CAG6501- A8031G C12525T C14408T A23403G G25599T GGG28881AAC C29353T

EPI_ISL_462753
 2020-05-27 2020-06-08
 Bosnia and Herzegovina hCoV-19/Bosnia and Herzegovina/01-Livno/2020
 ATTAAA1- A6867K C14408T A23403G T25533A C25614T T26300C T26445Y GGG28881AAC CTATCCCCATGTGATTTT29831- TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_469024 MT635270
 2020-05-27 2020-06-17
 India SARS-CoV-2/human/IND/GBRC184/2020
 C241T G2164T C2836T C3037T G8368A C10969T G11540T C14408T C18877T C22444T A23403G G25563T C26735T C26947T C28854T

EPI_ISL_469064
 2020-05-27 2020-06-17
 Sweden hCoV-19/Sweden/20-19008/2020
 C241T C3037T G9652T C14408T C20544A A23403G G26262A GGG28881AAC G29179A

EPI_ISL_469071
 2020-05-27 2020-06-17
 Sweden hCoV-19/Sweden/20-51758/2020
 C241T C3037T A8998G G11230T T14384G C14408T G18578A A23403G C27116T G28001T GGG28881AAC

EPI_ISL_472124
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A065B/2020
 C823T ATG1605- C8752T A9741C A10982G C19961T TTA21991- C26333T C26408T

EPI_ISL_472129
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A071C/2020
 C241T T606C C3037T C6628T C14408T T16993C A23403G A25167T GGG28881AAC

EPI_ISL_473166
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-162B37/2020
 C241T C3037T C6500A A13953G C14408T C20759T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_473183
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-162C70/2020
 ATTAAAGGTT1- C241T C3037T C6500A A13953G C14408T C20759T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_473206
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-162E10/2020
 ATTA1- C241T C3037T T8944C C14408T C14741T G22484T A23403G G27382T A28294C

EPI_ISL_473236
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163037/2020
 ATT1- C241T C3037T C9438T T13704C C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_473250
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163125/2020
 A1- C241T C3037T T8944C C14408T C14741T A23403G C28093Y

EPI_ISL_473254
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163161/2020
 C241T G2599A C3037T C14408T A23403G G26062T GGG28881AAC

EPI_ISL_473259
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1631BC/2020
 C241T C3037T T8944C C14408T C14741T A23403G A28294C

EPI_ISL_473416
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/England/BIRM-60499/2020
 C241T C3037T T9642C G10097A C10332T C14408T G18636T G23126T A23403G C23731T G28580T GGG28881AAC C29296T

EPI_ISL_473419
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/England/BIRM-604D5/2020
 C241T C2299T C3037T G3955T TCAAATTCG6329- C14408T A23403G T25663C C26936T GGG28881AAC C29750T

EPI_ISL_473423
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/England/BIRM-6054B/2020
 C241T C635T C3037T C14408T G15535T C16092T C21952T C23086T A23403G GGG28881AAC

EPI_ISL_473479
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B4671/2020
 C241T C3037T C14408T C19140T C19374T A23403G GGG28881AAC

EPI_ISL_473769
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/Scotland/CVR3729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2189A C3037T C14408T G15444T T18260C A23403G GGG28881AAC G29134T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_473832
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5676/2020
 C241T C3037T C14408T A20268G A23403G C28854T A29143C

EPI_ISL_473833
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5678/2020
 C241T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC

EPI_ISL_475344
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C0A1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T C3037T C14408T A23403G C25603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475393
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C6B41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T C3037T C14408T A23403G C25603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475420
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C9470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475469
 2020-05-27 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CE8D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T T4714C G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475527
 2020-05-27 2020-06-23
 Sweden hCoV-19/Sweden/20-51753/2020
 C241T C1059T G2885A C3037T C14408T G19670A G20377A A23403G G24368T G25563T

EPI_ISL_475528
 2020-05-27 2020-06-23
 Sweden hCoV-19/Sweden/20-51755/2020
 C241T G2198T C3037T C14408T A21137G A23403G G28373T GGG28881AAC

EPI_ISL_476095 LR824497 LR861056
 2020-05-27 2020-06-25
 Switzerland 140033
 C241T C3037T C5547T C9308Y C14408T A19548R A20268G C22347S A23403G C28854T

EPI_ISL_476097 LR824498 LR861054
 2020-05-27 2020-06-25
 Switzerland 140043
 C241T C3037T C5547T C7735Y C14408T A20268G G21795K A23403G G24933K C28253Y C28854T

EPI_ISL_476138
 2020-05-27 2020-06-25
 Sweden hCoV-19/Sweden/20-51759/2020
 C241T G970A C3037T G5008T C14408T A23403G C25791T GGG28881AAC

EPI_ISL_476895
 2020-05-27 2020-06-26
 India hCoV-19/India/DRDE 4661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C3037T C4809T C5055T T8022K C11575T C14408T A23403G G28325A G28690T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477730
 2020-05-27 2020-06-30
 United Kingdom hCoV-19/England/BIRM-60596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A19946G A23403G C23731T G24193C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478389
 2020-05-27 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A0679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T C12005T C14408T A23403G -28029TA GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479594
 2020-05-27 2020-06-30
 Singapore hCoV-19/Singapore/516/2020
 C3743T C14877T C16948T A28792G AAAAAAAAAAAA29892-

EPI_ISL_479595
 2020-05-27 2020-06-30
 Singapore hCoV-19/Singapore/517/2020
 G1323R C2509Y C6310A C6312A G11083T G11161R C13730T C19524T C21997T C23929T C23996T C27600T C28311T C29509T AAAAAAAAAAAA29892-

EPI_ISL_480657 MT745642
 2020-05-27 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2029/2020
 C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_481865
 2020-05-27 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DA68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10369T C14408T A23403G C23731T G25790K GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482628
 2020-05-27 2020-07-04
 India hCoV-19/india/NCDC7090_CSIR-IGIB/2020
 A4W C241T T1994W C3037T C6312M T8022K T13402K C13730Y C14408Y C18877Y C22444T G25481K G25563K C26735T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482629
 2020-05-27 2020-07-04
 India hCoV-19/india/NCDC7101_CSIR-IGIB/2020
 C241T C3037T T8503C C13730Y C14408Y C18877Y C22444T A23116W A23403R G25563K C26735T A28676M C28854T C29171Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482630
 2020-05-27 2020-07-04
 India hCoV-19/india/NCDC7102_CSIR-IGIB/2020
 C241T C3037T C6312M T8503C T13402K T13408K C13730Y C14408Y C18877Y C22444T C23929Y G25563K C26735Y C28854T C29171Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482640
 2020-05-27 2020-07-04
 India hCoV-19/india/NCDC7549_CSIR-IGIB/2020
 C241T T1947Y C3037T C6310T C13730Y C14408Y C18877T C22444Y T22515Y A23403G AG24389MS G25563K C26735T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482641
 2020-05-27 2020-07-04
 India hCoV-19/india/NCDC7554_CSIR-IGIB/2020
 ATTA1- T10G C241T C3037T A5607R C9679Y C10039Y C14408Y A18270R C18877T G21974T C22444T A23403R AG24389CC G25563K C25611M C26735T A28676M C28854T G29260K GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_482642
 2020-05-27 2020-07-04
 India hCoV-19/india/NCDC7556_CSIR-IGIB/2020
 C241Y C842M T1994W G2081K T2087Y C2091Y C2094Y C3037Y C6310M C6312M G10261R C13730T A15435R C15509M C18877Y A23403R C23929Y AG24389MS C25680M C28311Y C28854Y GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_482693
 2020-05-27 2020-07-05
 Singapore hCoV-19/Singapore/546/2020
 G914C C3261T C6310A C6312A T8566C G11083T C13730T C19524T C19687T C23929T C24370A T27318C C28311T

EPI_ISL_482694
 2020-05-27 2020-07-05
 Singapore hCoV-19/Singapore/547/2020
 C6040T C6310A C6312A G11083T C13730T G17592T C19524T C23929T T27588A C28311T

EPI_ISL_482965
 2020-05-27 2020-07-06
 United States hCoV-19/USA/MN-MDH-1244/2020
 ATTAAAGGTTT1- C241T C1059T C1150T C1812T C3037T C6026T C10319T C13665T C14408T G18412T A23403G G25563T C27964T C28531T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_482970
 2020-05-27 2020-07-06
 United States hCoV-19/USA/MN-MDH-1249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C12768T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_484891
 2020-05-27 2020-07-08
 United States hCoV-19/USA/WI-UW-516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T CCACGCGGAGT29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486115
 2020-05-27 2020-07-10
 United States hCoV-19/USA/CA-CZB-1778/2020
 ATTA1- C37T C241T C320S C1059T C3037T C6406T C8320T C9967T G11083T C14408T C17104T A23403G G24794T G25563T C27964T G28827T

EPI_ISL_488858
 2020-05-27 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1195C T1918C C3037T C9438T C9561Y C14408T C18877T C21618T A23403G G25563T C27610T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489129
 2020-05-27 2020-07-14
 United Kingdom hCoV-19/England/NORT-292BF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T C25714T C25771T C27739T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492002
 2020-05-27 2020-07-18
 Oman hCoV-19/Oman/205039048/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C11704T C14408T C16293T A23403G C25452T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_492003
 2020-05-27 2020-07-18
 Oman hCoV-19/Oman/205039149/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G9652T G10265A C14408T C16293T A17008G A23403G C28320T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_492044
 2020-05-27 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_57721/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G4649T C8092T C14408T C20759T A23403G T27299C C27524T GGG28881AAC G29000T T29148C G29861T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_492045
 2020-05-27 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_57722/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T G22604T A23403G C25433T T27299C GGG28881AAC G29000T T29148C TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856CT

EPI_ISL_493348
 2020-05-27 2020-07-21
 Mexico hCoV-19/Mexico/InDRE_33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1558G C3037T C6573T C14408T A20268G T22192C A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_493960
 2020-05-27 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB5621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3916G T9642G G10097A C14408T A23403G C23731T C25714T C25771T C25936T G28580T C28849T GGG28881AAC C29274T T29775C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494040
 2020-05-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1667C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G1738T C3037T C12513T C13862T C14408T A23403G G28396T C28836T

EPI_ISL_494202
 2020-05-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1680F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G419A C829T C1059T C3037T G3994A C5944Y G11670A C14408T C18508T A23403G G25563T G27415A G28371T

EPI_ISL_495992 MT834301
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1566/2020
 AT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_495995 MT834102
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1569/2020
 ATTAAAGGTTTAT1- C241T C1060T C3037T C14408T T19839C A23403G C28256T G28314A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496030 MT834254
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1604/2020
 ATTAAAGGTTT1- C241T C1800T C3037T C14408T C15933T G16968T T19839C A23403G C28725T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496042 MT834259
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1616/2020
 ATT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496043 MT834276
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1617/2020
 AT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_496045 MT834142
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1619/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496046 MT834360
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1620/2020
 ATTAAAGGTTTAT1- C3037T C14408T C17747T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496047 MT834145
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1621/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_496048 MT834183
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1622/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496049 MT834055
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1623/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A21215G A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_496050 MT834006
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1624/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T C15933T C16289T G16968T T19839C A21215G A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496051 MT834001
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1625/2020
 ATTAAAGGTTTA1- C241T C1204T C1441T G1747A C3037T C14408T C14783T C16289T C17745T G19969T T20354C A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496052 MT834049
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1626/2020
 AT1- C3037T C14408T C15933T G16968T T19839C A23403G T27351G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_496053 MT833982
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1627/2020
 AT1- C241T C3037T C10189T C14408T C15933T G16968T T19839C A23403G G28080A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_496054 MT833993
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1628/2020
 AT1- C241T C3037T C10189T C14408T C15933T G16968T T19839C A23403G G28080A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496055 MT834130
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1629/2020
 AT1- C241T C3037T C10189T C14408T C15933T G16968T T19839C A23403G G28080A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_496056 MT834004
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1630/2020
 AT1- C241T C3037T C10189T C14408T C15933T G16968T T19839C A23403G G28080A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496057 MT834059
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1631/2020
 AT1- C241T C1800T C3037T C14408T C15933T G16968T T19839C A23403G C28725T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496058 MT834189
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1632/2020
 ATTAAAGGTTTAT1- C241T C1800T C3037T C14408T C15933T G16968T T19839C A23403G C28725T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496059 MT834327
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1633/2020
 AT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_496060 MT834341
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1634/2020
 AT1- C241T C1059T C3037T C14408T C22482T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_496061 MT834353
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1635/2020
 ATTAAAGGTTT1- C241T C1059T C2508T C3037T C14408T A22171T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496062 MT834344
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1636/2020
 ATTAAAGGTTTATA1- C241T C1059T C2508T C3037T C14408T A23403G G25563T C28171T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496064 MT834305
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1638/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A17858G C22482T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496065 MT834358
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1639/2020
 ATTAAAGGTTTAT1- C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496069 MT834359
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1643/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T C22482T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496070 MT834313
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1644/2020
 AT1- C241T C1059T C3037T C4755T C14408T C22482T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496071 MT834267
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1645/2020
 ATTAAAG1- C241T C1059T C1063T C3037T C14408T G16912T A23403G G25563T T26677C G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496073 MT834329
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1647/2020
 ATTAAAGGTTTAT1- C241T C1059T C1170T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496255 MT833961
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1829/2020
 AT1- C241T C1613T C3037T T13180C C14408T C14599T C15933T G16968T G18210T T19839C C21302T CG21304AA A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496256 MT834105
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1830/2020
 ATTAAAGG1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496257 MT834165
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1831/2020
 A1- C241T C3037T C6445T C14216T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496258 MT834082
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1832/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_496259 MT834323
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1833/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T A5084G C14408T G16912T A23403G G25563T A28855G G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496260 MT834080
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1834/2020
 ATTAAAGGTTT1- C241T C1059T C3037T A5084G C14408T G16912T A23403G T25510C G25563T C27641T A28855G G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496261 MT834356
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1835/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496263 MT834310
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1837/2020
 ATTAAAG1- C241T C3037T C14408T T19839C A23403G GGG28881AAC A29700G C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496264 MT834126
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1838/2020
 AT1- C241T C3037T A4197G C14408T G16813A A23403G G24368C T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496265 MT834134
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1839/2020
 A1- C241T C1060T C3037T C14408T T19839C A23403G T27292C C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496266 MT834024
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1840/2020
 A1- C241T C3037T T5335C C6445T G14186A C14408T G16813A G16852T A23403G C27059T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496267 MT834050
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1841/2020
 AT1- C241T G1661T T2896C C3037T C6445T C14216T C14408T G16813A T19395C A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496268 MT834296
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1842/2020
 ATTAAAGGTTTAT1- C241T C3037T C6573T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496269 MT834115
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1843/2020
 AT1- C241T C3037T G4510T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496271 MT834303
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1845/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496272 MT834284
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1846/2020
 AT1- C241T C3037T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_496273 MT833969
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1847/2020
 ATTAAA1- C241T C1060T C3037T C14408T T19839C A21845G A23403G C25614T A28100G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_496274 MT834199
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1848/2020
 A1- C241T C3037T C14408T G21232A A23403G G24328C C28253T GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_496275 MT834175
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1849/2020
 AT1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496276 MT834233
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1850/2020
 AT1- G1401A C5002T C8782T A10785G C17747T A17858G C18060T C26322T T28144C C28253T C29367T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496277 MT834229
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1851/2020
 AT1- C241T C1204T G1747A C3037T C14408T C16289T C20831T A23403G G24348T G25429T G29648T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_496280 MT834191
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1854/2020
 ATTAAAGGTTTATA1- C241T C3037T G6404T C14408T C15933T G16968T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496281 MT834054
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1855/2020
 ATTAAAGGTTT1- C241T C2470T C3037T G6404T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_496282 MT834026
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1856/2020
 ATTAAAGG1- C241T C3037T C10015T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_496283 MT834011
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1857/2020
 AT1- C241T C2470T C3037T G6404T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496286 MT834261
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1860/2020
 AT1- C241T C1059T A1255G C3037T C14408T T16521C G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496287 MT834312
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1861/2020
 A1- C241T C1059T A1255G C3037T T16521C G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496288 MT834300
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1862/2020
 ATTAAAGGTT1- C1059T A1255G C3037T C14408T T16521C G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_496289 MT834246
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1863/2020
 ATTAAAGGTTTAT1- C241T C1059T A1255G C3037T C14408T T16521C G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496290 MT834298
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1864/2020
 ATTAAAGGTTT1- C241T C1059T A1255G C3037T C14408T T16521C G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496291 MT834336
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1865/2020
 ATTAAAGGTT1- C241T C1059T A1255G C3037T C14408T T16521C G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496292 MT834331
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1866/2020
 ATTAAAGGTTT1- C241T C1059T A1255G C3037T C14408T T16521C G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496294 MT834111
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1868/2020
 ATTAAAGGTTTAT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_496295 MT834290
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1869/2020
 ATTAAAGGTTT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496296 MT834266
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1870/2020
 AT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496297 MT834150
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1871/2020
 AT1- C241T C3037T G7393T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_496298 MT834220
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1872/2020
 ATTAAAGGTTTAT1- C241T C3037T C8782T C17747T A17858G T28144C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496299 MT834250
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1873/2020
 ATTAAAG1- C241T C1059T A1255G C3037T C14408T T16521C G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_496300
 2020-05-27 2020-07-24
 United States hCoV-19/USA/WA-S1874/2020
 ATT1- C241T C1059T A1255G C2838T C3037T T16521C G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496301 MT834273
 2020-05-27 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1875/2020
 ATTAAAGGT1- C241T C1059T A1255G C3037T C14408T T16521C G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_498238
 2020-05-27 2020-07-27
 Senegal hCoV-19/Senegal/45436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C32T C241T C3037T C3373A G10870T C14408T A23403G GGG28881AAC C28932T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_501040
 2020-05-27 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106F75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11600G C14408T A23403G A25448G C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507280
 2020-05-27 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII17940S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8074T G11029A C14408T C21772T A23403G GGG28881AAC C29518T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_507281
 2020-05-27 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII17941S/2020
 ATTAAAGGTTT1- C241T C3037T C8074T G11029A A12886G C14408T C21772T A23403G GGG28881AAC C29518T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507282
 2020-05-27 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII17948S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8074T G11029A C14408T C21772T A23403G GGG28881AAC C29518T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507283
 2020-05-27 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII17949S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C8074T G11029A C14408T C21772T A23403G GGG28881AAC C29518T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_507284
 2020-05-27 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII18088S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1514T C3037T C8326T C14408T A23403G G27415T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_507285
 2020-05-27 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII18089S/2020
 ATTAAAGG1- C241T C3037T A12886G C14408T C17285T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_507286
 2020-05-27 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII18090S/2020
 ATTAAAGG1- C241T C3037T A12886G C14408T C17285T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_507781
 2020-05-27 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC20995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C829T C1059T C3037T C14408T A23403G G25266T C25317A G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_508163
 2020-05-27 2020-08-04
 India hCoV-19/India/AR16/2020
 C241T C313T C3037T C5700A C14408T A23403G AG25562TA G25690T GGG28881AAC G29868A

EPI_ISL_508164
 2020-05-27 2020-08-04
 India hCoV-19/India/AR17/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T T9913C C10039T G11083T C14408T T14514C G16377T C18877T C22444T A23403G G25563T C26735T C28854T G29868A

EPI_ISL_508173
 2020-05-27 2020-08-04
 India hCoV-19/India/AR25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C5700A G11083T C14408T C16049T C20468T A23403G GGG28881AAC G29868A

EPI_ISL_508332
 2020-05-27 2020-08-04
 India hCoV-19/India/IB58/2020
 ATTAAAGGTTTATACCTTCC1- C28- C241T C3037T A3097G C5672T C14408T C18877T C22444T A23403G T24504C G25563T C26735T C28854T G29868-

EPI_ISL_508753 MT834660
 2020-05-27 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0550/2020
 ATTA1- C241T C1059T C3037T C5183T C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509139
 2020-05-27 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0438/2020
 ATTAAAGGTT1- C241T C3037T C14408T G20980A A23403G

EPI_ISL_509140
 2020-05-27 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2161G C3037T C14408T C16376T C18877T A23403G G25563T

EPI_ISL_509429
 2020-05-27 2020-08-05
 United States hCoV-19/USA/AL-SV110BV1/2020
 C241T C1059T C3037T A9562G TAT9858- C14408T G16710A G17893T C21575T G22289T A23403G G25563T C27964T

EPI_ISL_510659
 2020-05-27 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2323/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C1267T C2040T C3037T A7493G C14408T G19723T A23403G C25504G GGG28881AAC

EPI_ISL_510666
 2020-05-27 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2330/2020
 AT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T T21823C A23403G G25563T G29179T G29779T

EPI_ISL_510667
 2020-05-27 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2331/2020
 C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510668
 2020-05-27 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2332/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_510672
 2020-05-27 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2336/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T T21823C A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_510673
 2020-05-27 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2337/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_510674
 2020-05-27 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2338/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_510676
 2020-05-27 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2340/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G T25525C G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_510678
 2020-05-27 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2342/2020
 C241T G662T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_510679
 2020-05-27 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2343/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T G17058T A20675T A23403G G25563T A26234T G29179T G29779T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_510680
 2020-05-27 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2344/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T T21823C A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_510682
 2020-05-27 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2346/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C7303T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_510683
 2020-05-27 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2347/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_510685
 2020-05-27 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2349/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_510845
 2020-05-27 2020-08-07
 Sweden hCoV-19/Sweden/20-51765/2020
 C241T C1059T A2956G C3037T A5423G T5820C A6342C A10669G A10703G A11827G T12536C T12757C A17404C T20777C T20993C T21021C T21024C A21137G A23403G A23419G A23554G A23570G A23579G G25563T T25648C A25864G G25922T C26010T C28887T

EPI_ISL_510846
 2020-05-27 2020-08-07
 Sweden hCoV-19/Sweden/20-51767/2020
 C241T C1059T C3037T C7165T C14408T A19459G A23403G G24368T G25563T G29212A

EPI_ISL_510847
 2020-05-27 2020-08-07
 Sweden hCoV-19/Sweden/20-51769/2020
 C241T C959T C3037T C10277T C14408T A23403G C28453T GGG28881AAC

EPI_ISL_510848
 2020-05-27 2020-08-07
 Sweden hCoV-19/Sweden/20-51771/2020
 C241T C959T C3037T C10277T C14408T A23403G C28453T GGG28881AAC

EPI_ISL_510849
 2020-05-27 2020-08-07
 Sweden hCoV-19/Sweden/20-51772/2020
 C241T A1759G C3037T A4235G C10645T C14408T A23403G GGG28881AAC

EPI_ISL_510850
 2020-05-27 2020-08-07
 Sweden hCoV-19/Sweden/20-51773/2020
 C180T C241T C1059T C3037T C14408T C17678T G22201T A23403G G25563T A25864G G25922T C26010T C28887T

EPI_ISL_510851
 2020-05-27 2020-08-07
 Sweden hCoV-19/Sweden/20-51774/2020
 C180T C241T C1059T C3037T C14408T G17722T G22201T A23403G G25563T A25864G G25922T C26010T C28887T

EPI_ISL_511908
 2020-05-27 2020-08-10
 India hCoV-19/India/AR26/2020
 C241T C313T C3037T C5700A G11083T C14408T C16049T C20468T A23403G GGG28881AAC G29868A

EPI_ISL_512603
 2020-05-27 2020-08-11
 Ukraine hCoV-19/Ukraine/203100323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5812T C14408T A23403G C28093T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_512605
 2020-05-27 2020-08-11
 Ukraine hCoV-19/Ukraine/203100325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5986T C14408T C15324T A23403G A26530G A28521G G29553T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_512606
 2020-05-27 2020-08-11
 Ukraine hCoV-19/Ukraine/203100327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C5986T C14408T A23403G C24096T A26530G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_512607
 2020-05-27 2020-08-11
 Ukraine hCoV-19/Ukraine/203100328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5986T C14408T A23403G C24096T A26530G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_512608
 2020-05-27 2020-08-11
 Ukraine hCoV-19/Ukraine/203100329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5986T C14408T A23403G C24096T A26530G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_512609
 2020-05-27 2020-08-11
 Ukraine hCoV-19/Ukraine/203100330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5986T C14408T A23403G C24096T A26530G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_512610
 2020-05-27 2020-08-11
 Ukraine hCoV-19/Ukraine/203100331/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C5986T C14408T A23403G C24096T A26530G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_512611
 2020-05-27 2020-08-11
 Ukraine hCoV-19/Ukraine/203100332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C5986T A10323R C14408T A23403G C24096T A26530G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_512620
 2020-05-27 2020-08-11
 Ukraine hCoV-19/Ukraine/203100341/2020
 ATTAAAGGTTT1- C241T C3037T C5986T C14408T A23403G C24096T A26530G G27204T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_512621
 2020-05-27 2020-08-11
 Ukraine hCoV-19/Ukraine/203100342/2020
 ATTAAAGGTTTA1- C241T C3037T C5986T C14408T A23403G C24096T A26530G AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_512622
 2020-05-27 2020-08-11
 Ukraine hCoV-19/Ukraine/203100343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C5986T C14408T A23403G C24096T A26530G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_512623
 2020-05-27 2020-08-11
 Ukraine hCoV-19/Ukraine/203100344/2020
 AT1- C241T C3037T C5986T C14408T A23403G C24096T A26530R CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_512625
 2020-05-27 2020-08-11
 Ukraine hCoV-19/Ukraine/203100346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C5986T C14408T A23403G C24096T A26197C A26530G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_513095
 2020-05-27 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1078/2020
 C241T C3037T C4206T C10789T C14408T A17236G C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513192
 2020-05-27 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH854/2020
 C241T C3037T C14408T C15352T GGG28881AAC

EPI_ISL_513211
 2020-05-27 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH961/2020
 C241T C14408T A23403G G25563T C26735T

EPI_ISL_513741 MW035937
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T47K C241T C379A G669K C1059T C1170T A1381R C3037T T3843W C14408T C22224T A23403G G25563T C26013T T27318A G28703T

EPI_ISL_513742 MW035945
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2193/2020
 ATT1- C241T C379A C1059T C1170T C3037T C4890Y A13711R C14408T C22224T A23403G G25563T C26013T T27318A G28703T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513743 MW035967
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T

EPI_ISL_513744 MW035920
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T

EPI_ISL_513745 MW035950
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T

EPI_ISL_513746 MW035939
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2197/2020
 ATT1- C241T C1063T C3037T G12211T C14408T T15669C A20268G A23403G G29734C

EPI_ISL_513747 MW035972
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G1658K C3037T C14408T T15669C G17721K A20268G A23403G G29734C

EPI_ISL_513748 MW035948
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1063T C3037T C14408T T15669C A20268G A23403G G29734C

EPI_ISL_513749 MW035968
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2200/2020
 ATT1- A4W C241T C1059T C3037T C3602T C5157T C14408T C16762T A23403G G25563T

EPI_ISL_513750 MW035931
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2201/2020
 A1- C241T C3037T G3483T C14408T G15327T T15669C A20268G A23403G A25397G G29734C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_513751 MW035938
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2700T C3037T C12459Y C14408T T15669C A20268G A23403G C29466T G29734C

EPI_ISL_513752 MW035941
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2203/2020
 AT1- C241T C3037T G3483T A13962G C14408T T15669C G19872K A20268G A23403G A25397G G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513753 MW035956
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T G21255C C21364T A23403G C26625T C28744T GGG28881AAC G28960T

EPI_ISL_513754 MW035940
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2206/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C18115Y G21255C A23403G GGG28881AAC G28960T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_513755 MW035943
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2207/2020
 ATTA1- C241T T1578Y C3037T C6395Y C11109T C14408T C18744Y C19983T G21255C A23403G GGG28881AAC G28960T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513756 MW035924
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2208/2020
 ATTA1- C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T

EPI_ISL_513757 MW035918
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T G21255C A23403G GGG28881AAC G28960T C29358T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_513758 MW035964
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2210/2020
 AT1- C241T C3037T A4981G C14408T G21255C A23403G GGG28881AAC G28960T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513854 MW036003
 2020-05-27 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2445/2020
 ATTA1- G1401A C8782T G16141T G17278T C17747T A17858G C18060T T28144C C28868T C29353Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515451
 2020-05-27 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0197/2020
 ATTAAA1- C241T C3037T C10626T T11080G C14408T C18877T C21952T A23403G G25563T G25855T

EPI_ISL_515452
 2020-05-27 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0198/2020
 ATTA1- C241T C3037T C10626T T11080G C14408T C18877T C21952T A23403G G25563T G25855T

EPI_ISL_515453
 2020-05-27 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0199/2020
 ATT1- C241T C3037T C10626T T11080G C14408T C18877T C21952T A23403G G25563T G25855T

EPI_ISL_515454
 2020-05-27 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0200/2020
 ATT1- C241T C3037T G8851T C14408T C18377T A20268G A23403G C28854T

EPI_ISL_515455
 2020-05-27 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0201/2020
 ATT1- C241T C3037T G8851T C14408T C18377T A20268G A23403G C28854T

EPI_ISL_515456
 2020-05-27 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0202/2020
 ATTAAA1- C241T C1059T C3037T C13430T C14408T G16741T A23403G G25563T

EPI_ISL_515457
 2020-05-27 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0203/2020
 ATTAAA1- C241T C3037T C10626T C14408T C18877T A23403G G25563T G25855T

EPI_ISL_516748
 2020-05-27 2020-08-22
 United States hCoV-19/USA/SC-20-0546-T00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T A3054G C8950T C14408T A23403G A25201G G25563T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_520707
 2020-05-27 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290324509/2020
 C884T G1397A G8653T G11083T G12163T A19073G G27915T T28688C C28868T C29077T G29742T T29804C

EPI_ISL_521878 MT972117
 2020-05-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C6651T A7990G C14408T C18555T C18744T G20580T G23015C A23403G G25563T C25572T A27137G

EPI_ISL_521880 MT972119
 2020-05-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C6651T C14408T C18555T C18744T G20580T G23015C A23403G G25563T C25572T A27137G

EPI_ISL_521893 MT972132
 2020-05-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522396 MT946884
 2020-05-27 2020-08-25
 United States SARS-CoV-2/human/USA/AK-PHL346/2020
 A1- C241T C2143T C3037T C14408T A20268G A23403G C29077T C29370G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_522836 MT843297
 2020-05-27 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C36- C241T C1059T C3037T C3141A C12025T G13930A C14408T C17766T C18312T A23403G G25563T C26625T

EPI_ISL_522837 MT843298
 2020-05-27 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C36- C241T C1059T C3037T C3141A C12025T G13930A C14408T C17766T C18312T A23403G G25563T C26625T

EPI_ISL_522838 MT843299
 2020-05-27 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T490A C1188T T1651C G2284A C3177T C6040T C8782T G12256T G12478A T18736C C24034T T26729C G28077C T28144C C28896G A29700G A29860C

EPI_ISL_522839 MT843300
 2020-05-27 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0104/2020
 ATTAAAGG1- C241T C313T C1059T C3037T C14408T C16260T C19488T A23403G A24468G G25563T G26690T C27972T C28821A G29862A A29865G

EPI_ISL_522840 MT843301
 2020-05-27 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0105/2020
 ATTAAAGGTTTATACC1- C21T C241T C313T C1059T C3037T C14408T C16260T C19488T A23403G G25563T G26690T C27972T C28821A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_522842 MT843303
 2020-05-27 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G174T C241T C1059T C3037T G5924A C14408T C16260T C19488T A23403G G24932T G25563T G26690T G26834T C28821A

EPI_ISL_522843 MT843304
 2020-05-27 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C2416T C3037T T7126C C14408T A23403G G25563T G26233T T29867A

EPI_ISL_522844 MT843305
 2020-05-27 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0109/2020
 A4T C241T C1059T C3037T C14408T C20132T A21137G A23403G G25563T G27993A A29898G

EPI_ISL_522845 MT843306
 2020-05-27 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0110/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T T13909G C14408T C15324T A18507G G20580T A23403G A29782G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_522853 MT843314
 2020-05-27 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2113T C3037T C4534T G7042T C11109T C13115T C14408T A23403G G24095T G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_522854 MT843315
 2020-05-27 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0121/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T G27993A AAA29901-

EPI_ISL_523138
 2020-05-27 2020-08-26
 Netherlands hCoV-19/Netherlands/FR-EMC-46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T T17475C T19022C C20930T A23403G C27208T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523141
 2020-05-27 2020-08-26
 Netherlands hCoV-19/Netherlands/FR-EMC-49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T T19022C C20930T A23403G C27208T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523167
 2020-05-27 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523168
 2020-05-27 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T G19684T C21811T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523177
 2020-05-27 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T A9848G C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523189
 2020-05-27 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C15981T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523190
 2020-05-27 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T6634C C11109T C14408T T16891C A23403G G25563T C27707T GTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATC28003- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523260
 2020-05-27 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T13006C C14408T G16236T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523261
 2020-05-27 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C2401T C3037T G3893A C4048T T13006C C14408T C14674T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523424
 2020-05-27 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G C16308T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523466
 2020-05-27 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T A9848G C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524015
 2020-05-27 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-17684V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C815T G1397A G3259T C5310T C10854T C16375T G20887A C21627T C24553A C25521T C28830T G29742T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524016
 2020-05-27 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-17942V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C14408T G17721T A23403G GGG28881AAC G28975A C29666T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524984
 2020-05-27 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T G3563T C6541T C11379T C14408T C15026T C17004T A22320G A23403G G25563T C27964T G28373T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525042
 2020-05-27 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525128
 2020-05-27 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T A6512C C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525133
 2020-05-27 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T G28899A G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525138
 2020-05-27 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T A3121C G9705T C14408T G23009T A23403G G25563T G27637A C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525155
 2020-05-27 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C10789T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525162
 2020-05-27 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C11379T C14408T A22320G A23403G G25563T C27964T C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525275
 2020-05-27 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C14408T A15436G A22320G A23403G G25244T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525313
 2020-05-27 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C9344T C10626T C11379T C12153T C14408T A15702T C15928T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527692
 2020-05-27 2020-09-04
 United States hCoV-19/USA/MN-CDC-6281/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29449T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_529080
 2020-05-27 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C11916T C14408T A16839G C18998T A23403G G25563T G29540A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_530109
 2020-05-27 2020-09-10
 Spain hCoV-19/Spain/MD-R63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4321T C14408T T19839C A23403G GGG28881AAC ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_535044
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-C0FE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C C17288T A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535052
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-C4114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5730T C11289T C14408T T15051C C17913T A20255G C20698A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535056
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-C51F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535062
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-C6E93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T C8481T A8821G C14408T C15752T C18877T G18984T A23403G G24197T G25563T C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535063
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-C73EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20931A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535066
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-C98B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T C27143T C27697T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535073
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-CBAD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535075
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-CC273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G G9049T C14408T C15752T C18877T A23403G G24197T G25563T C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535081
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-CDD62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T C25665T C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535082
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-CDE14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535085
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-CE39C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535088
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-CF137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535091
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-D02C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535097
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-D1EB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C C17913T A20255G C20698A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535099
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-D2456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1093T T2080C C3037T C14408T T17497C A23403G GGG28881AAC G28916T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535100
 2020-05-27 2020-09-14
 United Kingdom hCoV-19/England/SHEF-D281E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C C17913T A20255G C20698A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535347 MT997986
 2020-05-27 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-2103/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535348 MT997767
 2020-05-27 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-2104/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535362
 2020-05-27 2020-09-14
 United States hCoV-19/USA/OK-ADDL-03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T C14408T G19069T A23403G G28179C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535363
 2020-05-27 2020-09-14
 United States hCoV-19/USA/OK-ADDL-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T C14408T G19069T A23403G G28179C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537522
 2020-05-27 2020-09-16
 United States hCoV-19/USA/CA-UCLA-215/2020
 A1- C241T TGGTCATGTTATGGT508- C635T C3037T T4711C C6568T A6709G C14408T A23403G C28253T GGG28881AAC TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_545251
 2020-05-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-2333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C14408T C15763T C21638T A23403G G25563T C27964T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545259
 2020-05-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-2351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G27281T C27493T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545260
 2020-05-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-2352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16163T G20397A A23403G C27630T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545262
 2020-05-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-2357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1059T C3037T C10319T C12374T C14408T C15763T A23403G G25563T C27964T C28087T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545263
 2020-05-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-2359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T C23320T A23403G G25563T C26954T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545300
 2020-05-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-2419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545320
 2020-05-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-2457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C14408T C15763T C18248T A23403G C25276T G25563T C27964T C29541T A29657T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545333
 2020-05-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-2478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C G9856T C14408T T20037C A23403G G23608A G25563T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559371
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49978B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11799G T14331C C14408T A15278G A23403G C25350T G28079T G28487A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559372
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-499633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3745G C14408T A14791T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559381
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4997C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559384
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-499624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A17986G G19947T C21638T A23403G G24095T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559396
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49942A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G704A C3037T C5051T C14408T C15368T G18583R A23403G A24425C C25276Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559402
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-499369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559405
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49969D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5336G C14408T C23191T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559413
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-499615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C512T G1069K C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559421
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4994A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4870R G10097A T13389C C14408T C14605T G17721T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559432
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4996AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4668Y A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559437
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A3539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T G22113T G22199T A23403G C23731T A26114G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559518
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A37CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559573
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A35C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A6375G A10948G C14408T C21736T A23403G G24926T C25665T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559585
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A389A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559618
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A392E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T C19488T A23403G G28817K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559642
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A39F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559749
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-466A15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- C3037T G10097A C13994T C14408T T19590C A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559750
 2020-05-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-46667B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- C3037T G10097A C13994T C14408T T19590C A23403G C23731T G25879T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568691
 2020-05-27 2020-10-02
 Indonesia hCoV-19/Indonesia/JK-EIJK-40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3550G G9849A C12823T G13714A G21399T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT820132
 2020-05-27 2020-07-30
 United States SARS-CoV-2/human/USA/SV110BV1/2020
 C241T C1059T C3037T A9562G TAT9858- C14408T G16710A G17893T C21575T G22289T A23403G G25563T C27964T

MT955168
 2020-05-27 2020-08-29
 Tunisia SARS-CoV-2/human/TUN/TUN_ADAGE_EZ224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T A391G C3037T C14408T A23403G C28531T GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

MT967899
 2020-05-27 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6281/2020
 C241T C1059T C3037T C14408T A23403G G25563T G29449T AAAAAAAAAAAAAAAAAAAAA29883-

MT981418
 2020-05-27 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C11916T C14408T A16839G C18998T A23403G G25563T G29540A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MW001278
 2020-05-27 2020-09-14
 United States SARS-CoV-2/human/USA/269-ETA/2020/P1
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A C29247T T29344C AAAAAAAAAAAAAAAAAAAAA29883-

MW001282
 2020-05-27 2020-09-14
 United States SARS-CoV-2/human/USA/272-NP-OP/2020/P1
 C241T T1918C C3037T C6388T C14408T C18877T C23230T A23403G G25563T C28609T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_454369
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL85/2020
 C241T C1059T C3037T T5347C C14408T A23403G C25469T G25563T C29739T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454377
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL97/2020
 C241T C3037T C10015T C14408T A15002G T15264C A23403G GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454385
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL108/2020
 C241T C745T C1059T C3037T C11916T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454386
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL109/2020
 C241T GTCATGTTA510- C1059T C3037T C14408T A23403G G25563T C26060T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454388
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL111/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454389
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL113/2020
 C241T C1059T C3037T T3909C C5031T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454390
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL114/2020
 C241T C1059T C3037T C13684T C14408T A23403G G25563T C26527T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454391
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL115/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29463T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454392
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL118/2020
 C241T C3037T C4540T G4904T G5206T C14408T A23403G C24138T C25350T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454393
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL119/2020
 C241T C1059T C3037T T3436A T12283C C14408T A23148G A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454394
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL122/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454395
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL123/2020
 C241T C1059T C3037T C14408T A23403G G25563T C28087T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454396
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL125/2020
 C241T T1918C C3037T C14408T C18877T TC20343GT A23403G G25563T G29620C GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454397
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL128/2020
 C241T C1059T C3037T C14408T A23403G G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454398
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL130/2020
 C241T C1059T C3037T C14408T A23403G G25563T G26660T C28887T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454400
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL135/2020
 C241T C1059T C3037T C11139T C14408T G18255T G21986A G22021T A23403G G24535T G25563T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_454405
 2020-05-28 2020-05-28
 United States hCoV-19/USA/PA-MGEL147/2020
 C241T C1059T C3037T C14408T A21137G A23403G G25563T G27467A G28985T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_461940
 2020-05-28 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111900/2020
 G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_461952
 2020-05-28 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111A2B/2020
 G199T C241T A2526C C3037T A3046G C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_461953
 2020-05-28 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111A3A/2020
 C241T C274T C3037T C6312A A10948G A12075G C14408T A23403G G25552T GGG28881AAC

EPI_ISL_467508
 2020-05-28 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0158/2020
 A1- C241T C3037T G11083T C14408T C16376T A23403G C24034T G28628T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_467518
 2020-05-28 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0168/2020
 A1- C241T C3037T C14408T C16376T A23403G C24034T G28628T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_469065
 2020-05-28 2020-06-17
 Sweden hCoV-19/Sweden/20-19192/2020
 C241T G1466A C3037T C3784T G5665A T12142C C14408T A23403G C24023T C25936T GGG28881AAC

EPI_ISL_469107
 2020-05-28 2020-06-17
 Singapore hCoV-19/Singapore/352/2020
 C6310A C6312A G11083T C13730T C19524T G19684T T22297C C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469526
 2020-05-28 2020-06-18
 United Kingdom hCoV-19/England/BRIS-131885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16929C G17964K A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_472126
 2020-05-28 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A06D3/2020
 C241T TGTTATGGT514- C3037T C14408T G15894T T19893C A23403G GGG28881AAC

EPI_ISL_472127
 2020-05-28 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A06E2/2020
 C241T C3037T G3323A C14408T C20555T A23403G GGG28881AAC

EPI_ISL_472336
 2020-05-28 2020-06-23
 United Kingdom hCoV-19/England/NORW-ECB90/2020
 ATTA1- C241T C3037T G3052K A9749G C14408T C14925T A23403G A24232G G25429T G27788T G29690T

EPI_ISL_473141
 2020-05-28 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16291F/2020
 AT1- C241T TGTTATGGT514- C829T C1059T T2432C C3037T G9182A T9440A C14408T C16111Y A23403G G25563T G27415A G28371T

EPI_ISL_473146
 2020-05-28 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-162988/2020
 C241T C815T C3037T C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_473179
 2020-05-28 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-162C16/2020
 ATTAAAGGTTTATACCT1- C241T A489G C3037T T5465C C5693T G6387A C14408T C18486T G21624T A23403G G24102A A24232T AA25800TT GGG28881AAC

EPI_ISL_473261
 2020-05-28 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1631E9/2020
 ATTA1- C241T C3037T T3049C C14408T G21624T A23403G GGG28881AAC

EPI_ISL_473464
 2020-05-28 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B426E/2020
 C241T C3037T C4012T C14408T C14676T C19140T C19374T A23403G GGG28881AAC C29200T

EPI_ISL_473834
 2020-05-28 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5680/2020
 C241T C3037T C11956T C14408T A20268G A23403G C28854T A28856G

EPI_ISL_473835
 2020-05-28 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5682/2020
 C241T TGGTCATGTTATGGT508- T1576C C3037T C14408T A20268G A23403G C25844T C28854T

EPI_ISL_473836
 2020-05-28 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5683/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G

EPI_ISL_473837
 2020-05-28 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5684/2020
 C241T TGGTCATGTTATGGT508- T1576C C3037T C14408T A20268G A23403G C25844T C28854T

EPI_ISL_475417
 2020-05-28 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C91E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T C3037T C14408T A23403G C25603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475497
 2020-05-28 2020-06-23
 United Kingdom hCoV-19/England/SHEF-D1976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2304G C3037T G7675T T8908C G11743T C14408T G22073T A23403G C25603T G26828T G28378A C28826T GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475525
 2020-05-28 2020-06-23
 Sweden hCoV-19/Sweden/20-19194/2020
 C241T G1148T C2485T C3037T G4317A C6472T C9319A C11379T C14408T G21974T A23403G G24095T G25033T GGG28881AAC

EPI_ISL_475529
 2020-05-28 2020-06-23
 Sweden hCoV-19/Sweden/20-51780/2020
 C241T C1059T C1288T C3037T C14408T C16111T G20134T A23403G G24368T G25563T

EPI_ISL_475567
 2020-05-28 2020-06-23
 Sweden hCoV-19/Sweden/20-19258/2020
 C241T C3037T C5826T C10908T C14408T C14688T A23403G T24631C C24865T G28727T GGG28881AAC

EPI_ISL_476063
 2020-05-28 2020-06-25
 United States hCoV-19/USA/MI-MDHHS-SC20927/2020
 C241T C337T C1059T C2976T C3037T C5512T T8899Y C14408T C15699T T15849Y C21575T A23403G G25563T C27673T C29774T

EPI_ISL_476098 LR824495 LR861063
 2020-05-28 2020-06-25
 Switzerland 140047
 C241T C3037T G6611A C10301A C14408T C15952Y T22516W A23403G C25693T GGG28881AAC G29398A

EPI_ISL_476100 LR824499 LR861053
 2020-05-28 2020-06-25
 Switzerland 140049
 C241T C3037T C5547T C14408T A19298W A19326W G19478R A19548R A20268G G22661T A23403G C28854T

EPI_ISL_476842
 2020-05-28 2020-06-26
 India hCoV-19/India/DRDE 4764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGC1- C241T C3037T C3634T T8022K G11221T C13446T C14408T C15324T C15386T C18511T C22993T A23403G G25855T G27163T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477735
 2020-05-28 2020-06-30
 United Kingdom hCoV-19/England/BIRM-605E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G11083T C14408T G18651T A23403G C23731T T24763C G25757T C28093T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479443
 2020-05-28 2020-06-30
 United Kingdom hCoV-19/Wales/PHWC-165299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8944C C14408T C14741T A23403G

EPI_ISL_482634
 2020-05-28 2020-07-04
 India hCoV-19/india/NCDC7512_CSIR-IGIB/2020
 C241Y T1947Y C3037T C6312M C9195M C13730Y C13989Y C14408Y A15435R C18877Y C21658T C22444Y A23403R G25563K C26735Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482635
 2020-05-28 2020-07-04
 India hCoV-19/india/NCDC7515_CSIR-IGIB/2020
 A1- C241Y T1947Y C3037T C13730Y C14408Y C18877Y C22444Y A23403G AG24389MS G25563K G26709R C26735T C28854T G29024T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482637
 2020-05-28 2020-07-04
 India hCoV-19/india/NCDC7527_CSIR-IGIB/2020
 A1- G2081K T2087Y C2094Y C10039Y C12020Y C13730Y C14408Y C18877Y C22444Y G23236K A23403R AG24389MS G25563K C26735Y A28676M A29337R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482650
 2020-05-28 2020-07-04
 India hCoV-19/india/NCDC7624_CSIR-IGIB/2020
 A1- C241T C313T C3037T C8139T A10286G C14408T G22026K A23403G AG24389MS C25701T A28676M GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482656
 2020-05-28 2020-07-04
 India hCoV-19/india/NCDC7661_CSIR-IGIB/2020
 C241Y C1059Y C3037Y C6310M C6312M G10261R C13730Y C14408Y A15435R C15509M T15513W G16236K C18877Y G20335K G20410K G20679K C22444Y A23403R C23709Y C23929Y C26735Y C28854Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482661
 2020-05-28 2020-07-04
 India hCoV-19/india/NCDC7715_CSIR-IGIB/2020
 ATTAAAGGTT1- C241Y C3037Y G10261R C13730Y C14408Y A15435R C15509M T18132Y C18877Y C22444Y A23403R AG24389MS G25481K G25563K C26735Y C28854Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482664
 2020-05-28 2020-07-04
 India hCoV-19/india/NCDC7721_CSIR-IGIB/2020
 C241Y C842M A2026R C3037Y C6310M C6312M G10261R C13730Y C14408Y A15435R G17334K C18877Y A23403R C23929Y G24390S G25563K C26735Y C28311Y C28854Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_482665
 2020-05-28 2020-07-04
 India hCoV-19/india/NCDC7728_CSIR-IGIB/2020
 C241Y C313Y C3037Y C6310M C6312M G10261R C11020Y C13730Y C14408Y A15435R A21137R A23403R C23929Y GGG28881RRS C29733Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482669
 2020-05-28 2020-07-04
 India hCoV-19/india/NCDC7757_CSIR-IGIB/2020
 C241Y C835Y C841M T1947Y C3037T C13730Y C14408Y A15435R C15509M C18877Y C21301T C22444Y A23403G AG24389MS G25563K C26735T A28676M C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_482692
 2020-05-28 2020-07-05
 Singapore hCoV-19/Singapore/545/2020
 C6310A C6312A G11083T C13730T A19494G C19524T C23929T C28311T A28855T

EPI_ISL_484505
 2020-05-28 2020-07-08
 United Kingdom hCoV-19/England/SHEF-CDC47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486438
 2020-05-28 2020-07-10
 Latvia hCoV-19/Latvia/054/2020
 C241T C3037T TG13575CT C14408T A23403G C25831T GGG28881AAC

EPI_ISL_488869
 2020-05-28 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C3397T T11526C C14408T C18877T A23403G G24197T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489120
 2020-05-28 2020-07-14
 United Kingdom hCoV-19/England/BRIS-131937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C12546T C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490247
 2020-05-28 2020-07-15
 United Kingdom hCoV-19/England/202822191/2020
 C218T C241T C3037T T10810C G11291A C14408T T15207A T17835C T21195C C21855T A23403G C24802T T24979C C25710T C28236T

EPI_ISL_490249
 2020-05-28 2020-07-15
 United Kingdom hCoV-19/England/202822193/2020
 C241T C512Y C2416Y C3037T C3784Y G4399K C4901Y G8371K T9322Y C9693Y G11083K C14408T C18486Y C18877Y G20006K G22026K C22227Y C22450Y C22477Y A23403G G25563T C26735Y T29026Y

EPI_ISL_490815
 2020-05-28 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165EFF/2020
 ATTAAAGGTTTATACCT1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C12623Y C12781T C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C G29810T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_492005
 2020-05-28 2020-07-18
 Oman hCoV-19/Oman/205039531/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T G9652T G10265A C14408T C16293T A17008G A23403G C28320T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_492006
 2020-05-28 2020-07-18
 Oman hCoV-19/Oman/205039569/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T A23403G C25452T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_493491
 2020-05-28 2020-07-21
 United Kingdom hCoV-19/England/NORT-29B1BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493628
 2020-05-28 2020-07-21
 United Kingdom hCoV-19/England/PORT-2CFF4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C9857T C14408T C16887T C21292T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493963
 2020-05-28 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB6640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T838C G1729A C1973T C2919T C3037T C14408T C18877T C22444T C23191T A23403G T23605C G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494211
 2020-05-28 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1681D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C815T C3037T C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_496092 MT834143
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1666/2020
 ATTAAA1- C241T G343T G970A C3037T C9565T C14408T C15933T G16968T T19839C A23403G C25587T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496270 MT834060
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1844/2020
 AT1- C241T G777A C3037T C10296T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496285 MT834097
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1859/2020
 AT1- C241T C3037T A4197G C6285T T12232C C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496302 MT834320
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1876/2020
 ATTAAAGGT1- C241T C1059T C2508T C3037T C14408T A22171T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496303 MT834023
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1877/2020
 AT1- C241T C3037T C3992T G4510T C14408T C15933T T19839C A23403G T25451C G25489T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_496304 MT834017
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1878/2020
 A1- C241T C3037T C14408T C15933T G16968T G18525T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_496305 MT834135
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1879/2020
 ATTAAAGGTTTATACCT1- C1348T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496306 MT834083
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1880/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C25710T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_496307 MT833967
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1881/2020
 A1- C241T C3037T C10189T A10323G C14408T C15933T G16968T T19839C A20458T A23403G G28080A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_496308 MT834000
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1882/2020
 AT1- C241T C3037T G8075A G10996T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496309
 2020-05-28 2020-07-24
 United States hCoV-19/USA/WA-S1883/2020
 ATT1- C241T C3037T A4070T C14408T C15933T G16968T T19839C A23403G C24863T GGG28881AAC C29259T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496310 MT834157
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1884/2020
 A1- C241T C3037T C4582T G7393T C8175T C12053T C14408T A20268G G21718T A23403G AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_496311 MT834096
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1885/2020
 ATTAAAGG1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C25710T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496312 MT834112
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1886/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C25710T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496313 MT834354
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1887/2020
 ATTAAAGGTTT1- C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496314 MT834352
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1888/2020
 ATTAAAGGTT1- C241T C1059T C2508T C3037T C14408T A22171T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496315 MT834249
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1889/2020
 AT1- C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496316 MT834087
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1890/2020
 ATTAAAGG1- C3037T C15933T G16968T A17858G T19839C A23403G GGG28881AAC A29188T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_496317 MT834177
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1891/2020
 AT1- C241T C1060T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_496318 MT834076
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1892/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C C21846T A23403G G26428T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496320 MT834015
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1894/2020
 A1- C241T C3037T C3992T G4510T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_496321 MT834281
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1895/2020
 ATTAAAGGTTTAT1- C203T C241T C3037T C14408T C15933T G16968T T19839C A23403G G28883C C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496322 MT834158
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1896/2020
 ATTAAAGGTTTA1- C241T C3037T C3992T G4510T C15933T T19839C A23403G T25451C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_496323 MT834264
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1897/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496324 MT834070
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1898/2020
 AT1- C241T C3037T G6404T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAA29897-

EPI_ISL_496325 MT834074
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1899/2020
 ATTAAAG1- C241T C3037T C14408T C15933T G16813A G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496326 MT834225
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1900/2020
 AT1- C241T C3037T A4197G C14408T G16813A A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_496327 MT834181
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1901/2020
 ATTAAAG1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G25313A C27110T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496328
 2020-05-28 2020-07-24
 United States hCoV-19/USA/WA-S1902/2020
 ATTAAAGGTTTAT1- C241T G371T C3037T C14408T C15933T G16968T G21372T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496335 MT834035
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1909/2020
 AT1- C241T C3037T C3992T G4510T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_501039
 2020-05-28 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106E1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C14408T A23403G T27560A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508183
 2020-05-28 2020-08-04
 India hCoV-19/India/AR36/2020
 ATTAAAGGT1- A12T C16A GG23-C C241T C3037T C3397T C3634T C14408T C15324T C15933T C19983T A22459T A23403G G27225T G29868A

EPI_ISL_508185
 2020-05-28 2020-08-04
 India hCoV-19/India/AR41/2020
 ATTAAAGGTTTATAC1- C20G A22G C241T C313T C3037T C5700A GC9245TT C14408T A23403G G24535T GGG28881AAC G29868A

EPI_ISL_508187
 2020-05-28 2020-08-04
 India hCoV-19/India/AR43/2020
 ATTAAAGGTTTA1- C241T C313T C3037T C5700A GC9245TT C14408T A23403G G24535T GGG28881AAC G29868A

EPI_ISL_508457
 2020-05-28 2020-08-04
 India hCoV-19/India/S67/2020
 C241T G2945T C3037T G3351T G4390A A11991G C14408T A23403G G29868A

EPI_ISL_510671
 2020-05-28 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2335/2020
 ATTAAAG1- C241T C1059T C3037T C7303T C11916T C14408T C16650T A20675T A23403G G24638T G25563T C25638T G29179T G29779T AAAAAAAAAAAAAAA29889-

EPI_ISL_510675
 2020-05-28 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2339/2020
 ATTAAAG1- C241T C1059T C3037T C7303T C11916T C14408T C16650T A20675T A23403G G24638T G25563T C25638T G29179T G29779T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_510684
 2020-05-28 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2348/2020
 ATTAAAG1- C241T C1059T C3037T C7303T C11916T C14408T C16650T A20675T A23403G G24638T G25563T C25638T G29179T G29779T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_510686
 2020-05-28 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2350/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_510687
 2020-05-28 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2351/2020
 ATTAAAG1- C241T C1059T T1831C C3037T C6361T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_510688
 2020-05-28 2020-08-07
 South Korea hCoV-19/South Korea/KCDC2352/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_510814
 2020-05-28 2020-08-07
 Sweden hCoV-19/Sweden/20-08908/2020
 C241T C1059T C3037T C14408T A23403G G24368T G25563T C25614T

EPI_ISL_510815
 2020-05-28 2020-08-07
 Sweden hCoV-19/Sweden/20-08909/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_510816
 2020-05-28 2020-08-07
 Sweden hCoV-19/Sweden/20-08910/2020
 C241T C3037T G8813A C14408T A23403G C26447T GGG28881AAC C28887T C28896T

EPI_ISL_511815
 2020-05-28 2020-08-08
 United States hCoV-19/USA/CA-IGI-0060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G174C C241T C1059T C3037T C8078T C13665T C14408T A20755C C20946T A23403G G25563T

EPI_ISL_512634
 2020-05-28 2020-08-11
 Ukraine hCoV-19/Ukraine/203100355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1572Y C3037T C3373A C14408T A18540G A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_513760 MW035952
 2020-05-28 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2212/2020
 C241T ATG518- C1213Y C3037T C14408T G21255C A23403G GGG28881AAC G28960T G29300S

EPI_ISL_513761 MW035955
 2020-05-28 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2213/2020
 C241T ATG518- C2449T C3037T G5206R C14408T G21255C A23403G GGG28881AAC G28960T

EPI_ISL_513762 MW035934
 2020-05-28 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C3602T C5157T C14408T C16762T A23403G G25563T T27380C C27509Y

EPI_ISL_513763 MW035925
 2020-05-28 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2215/2020
 ATTAAAGGTTTATAC1- C241T C3037T T4711C C4897T A6360G A6709G T10076C C14408T C18570T A18945G A23403G GGG28881AAC C29025T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29730-

EPI_ISL_513764
 2020-05-28 2020-08-13
 United States hCoV-19/USA/CA-CZB-2216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T T4711C C4897T A6709G T10076C C14408T C18570T A18945G A23403G GGG28881AAC C29025T CACCGAGGCCACGCGGAGTACGATCGAGTGTACA29730-

EPI_ISL_513765
 2020-05-28 2020-08-13
 United States hCoV-19/USA/CA-CZB-2217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T T4711C C4897T A6709G T10076C C14408T C18570T A18945G A23403G GGG28881AAC C29025T CACCGAGGCCACGCGGAGTACGATCGAGTGTACA29730-

EPI_ISL_513766 MW035970
 2020-05-28 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2218/2020
 C241T ATG518- C3037T C14408T T15060G G21255C A23403G GGG28881AAC G28960T

EPI_ISL_513902 MW036000
 2020-05-28 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTG1- C241T C1059T C3037T C11916T C14408T C18998T C19145T A23403G G25563T G29540A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514756
 2020-05-28 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2353/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C7303T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_514757
 2020-05-28 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2354/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_514758
 2020-05-28 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2355/2020
 ATTAAAGGTTTAT1- C241T C1059T T1831C C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_514759
 2020-05-28 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2356/2020
 ATTAAAGGT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_514790
 2020-05-28 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2387/2020
 C241T C1059T C3037T C11916T C12789T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_521872 MT972111
 2020-05-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T1947C C3037T C9195A C13989T C14408T C18877T C21658T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_521873 MT972112
 2020-05-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521874 MT972113
 2020-05-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T1947C C3037T C6500T C9195A C11919T C13989T C14408T G16647T C18877T C21658T C22444T A23403G G25563T C26735T C28854T A29780R

EPI_ISL_521876 MT972115
 2020-05-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C925T C1059T C3037T C5310T C12778T C14408T C14786T A23403G G25563T C28076T C28826T

EPI_ISL_521877 MT972116
 2020-05-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22498T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521881 MT972120
 2020-05-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C6651T T13963C C14408T C18555T C18744T G20580T G23015C A23403G G25563T C25572T A27137G

EPI_ISL_521882 MT972121
 2020-05-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C6651T C14408T C18555T C18744T G20580T G23015C A23403G G25563T C25572T A27137G

EPI_ISL_521883 MT972122
 2020-05-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C6651T C14408T C18555T C18744T G20580T G23015C A23403G G25563T C25572T

EPI_ISL_522848 MT843309
 2020-05-28 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0115/2020
 ATTAAAGGTT1- C241T C619T C1059T C3037T C14408T A14912G A23403G G25563T C25613T G27240T

EPI_ISL_522871 MT843318
 2020-05-28 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T G9928T C14408T C15763G T20406A A23403G C26801T GGG28881AAC G29868-

EPI_ISL_523142
 2020-05-28 2020-08-26
 Netherlands hCoV-19/Netherlands/FR-EMC-50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T A20047G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523178
 2020-05-28 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C2842T C3037T A8946G A10317G C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523257
 2020-05-28 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C9967T C11109T C14408T A23403G G25563T G25617T C26250T C27167T C27393T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523258
 2020-05-28 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T G25617T C27393T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523447
 2020-05-28 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C15981T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523448
 2020-05-28 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C15981T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524017
 2020-05-28 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-18220V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T T7746C C14408T A23403G G24038T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524018
 2020-05-28 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-18357V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T A4297G A5040G C6027T G13126T C14408T C17470T A23403G A26927G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524019
 2020-05-28 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-18358V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T A4297G A5040G C6027T G13126T C14408T C17470T A23403G A26927G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524980
 2020-05-28 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G G13201A C14408T A23403G C26256T G27987T C29668T G29755T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524988
 2020-05-28 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2704T C2939T C3037T C5402A A5689G T11698C G12395A C14408T G16935T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524990
 2020-05-28 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C8389T G9705T C9745T G11521A C14408T A23403G G25563T C27964T G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525022
 2020-05-28 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1135T G1148T C3037T C14408T A20268G A23403G G28109T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525033
 2020-05-28 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2527T C3037T C4780T C7428T C14408T A20268G C20719T G22813A A23403G C26527T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525043
 2020-05-28 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T C17125T A19175C T19839C A22320G A23403G G25523T G25563T C27964T T29685G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525045
 2020-05-28 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C12774T C14408T A22320G G22349A A23403G G25244T G25563T C26735T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525151
 2020-05-28 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525187
 2020-05-28 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T G2527T C3037T C4780T C7428T C14408T A20268G C20719T G22813A A23403G C26527T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526899
 2020-05-28 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G15760A C18171A G22899T A23403G G25563T C28887T C29870A

EPI_ISL_530110
 2020-05-28 2020-09-10
 Spain hCoV-19/Spain/MD-R64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C26873T C28854T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530179 MT997701
 2020-05-28 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G1186A C3037T T4033C C8109T C8986T C11916T C14408T A23403G C25413T G25563T C28674T G28857T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_535051
 2020-05-28 2020-09-14
 United Kingdom hCoV-19/England/SHEF-C3D8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8530G C9474T C14408T T17190C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535060
 2020-05-28 2020-09-14
 United Kingdom hCoV-19/England/SHEF-C6419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C C17913T A20255G C20698A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535064
 2020-05-28 2020-09-14
 United Kingdom hCoV-19/England/SHEF-C8B7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535069
 2020-05-28 2020-09-14
 United Kingdom hCoV-19/England/SHEF-C9FAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C657T C3037T C14177T C14408T A16938T A22407G A23403G G26262T GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535079
 2020-05-28 2020-09-14
 United Kingdom hCoV-19/England/SHEF-CCDEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T C8481T A8821G C14408T C15752T C18877T G18984T A23403G G24197T G25563T C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535080
 2020-05-28 2020-09-14
 United Kingdom hCoV-19/England/SHEF-CD9D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C C17913T A20255G C20698A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535084
 2020-05-28 2020-09-14
 United Kingdom hCoV-19/England/SHEF-CE11A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C C17913T A20255G C20698A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537560
 2020-05-28 2020-09-16
 United States hCoV-19/USA/CA-UCLA-28/2020
 ATTAAAGG1- T13C C241T C3037T G4136T T6001A C9207A C14408T C17502T G17686T C19151T A20268G A23403G T24076C G28373T C28854T T29793A GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_545302
 2020-05-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-2421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C335T C3037T C14408T C16017T A23403G C24718A T27212C G27561T C27629T A29292T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545305
 2020-05-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-2424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545315
 2020-05-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-2449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A642G C1059T C3037T G4207T G6986A C14408T G17944T G18412T A23403G G25563T G27047T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545317
 2020-05-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-2451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T490A C3177T C6040T C8782T C8950T C11109T G12478A T18567C T18736C T19713C C24034T G26107A T26729C G28077C T28144C C28896G C29451T A29700G G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545322
 2020-05-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-2460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A C14408T C17333A A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545324
 2020-05-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-2462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C6380T G14335T C14408T A23403G G24193T T27984C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545327
 2020-05-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-2470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3784T C14408T C20628T A23403G C24130T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545331
 2020-05-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-2474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3241T A7921G C14408T C18877T G20580T T22744C A23403G G25563T C29284T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545332
 2020-05-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-2475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A13938G C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545334
 2020-05-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-2482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8105T C8123T C14408T A23403G G24812T C24919T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560318
 2020-05-28 2020-09-28
 India hCoV-19/India/HR-IMT-AE21/2020
 ATTA1- C241T C1059T C3037T C10755T C14408T G17110T A23403G G25563T G26690T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_561034
 2020-05-28 2020-09-30
 Gambia hCoV-19/Gambia/GC19-1818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5515T C13694T C14408T A23403G C28310T GGG28881AAC C29025T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568993
 2020-05-28 2020-10-02
 France hCoV-19/France/IHU-0926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T A2818C C3037T T9596C C14408T A15596G T19516C A23403G G25563T G25599T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT797764
 2020-05-28 2020-07-24
 United States SARS-CoV-2/human/USA/COVID20-0235/2020
 ATTAAAGGTTT1- C241T C1059T C3037T A5957G C14408T C16349T C17676T C20405T C21110T A23403G G25563T C27964T C28846T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_454768
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/Utrecht_10019/2020
 ATTAAA1- T514C ATG1605- C17410T AAAAAA29898-

EPI_ISL_455181
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T G11596T C14408T C18555T A23403G A26530G C28957T C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455184
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T G11596T C14408T C18555T A23403G A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455185
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T G11596T C14408T C18555T A23403G A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455186
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455187
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T G11596T C14408T C18555T A23403G A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455188
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T C10408T G11596T C14408T C18555T A23403G A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455189
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T G11596T C14408T C18555T G19824T A23403G A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455190
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T G11596T C14408T C18555T A23403G G25776T A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455191
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T G11596T C14408T C18555T A23403G A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455192
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T C10408T G11596T C14408T C18555T A23403G A26530G C29358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455193
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T G11596T C14408T C18555T A23403G A26530G C29358T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455201
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C7765T C9207T C14408T C17690T C18877T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455223
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T C26645T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455224
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G4720T C11109T C14408T TTA20339- A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455259
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2051T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455260
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_455262
 2020-05-29 2020-05-29
 Netherlands hCoV-19/Netherlands/NA_460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7095T C14408T A16179G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461450
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T TT29858AA GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461451
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C7564T C8290T G11083T C14408T A23403G G25563T G28376T T29859A GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461452
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10029/2020
 ATTAAAGGTT1- T13C C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461453
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T T29859A GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461454
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10036/2020
 TAAAGGTTTATACCTTCCCAGGTAACAAA3- C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T T29859A GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461455
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10039/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T C29167T T29859A GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAAA

EPI_ISL_461456
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10040/2020
 ATTAA1- T13C C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461457
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10042/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C7564T G11083T C13423T C14408T C17352T A23403G G25563T G28376T TT29858AA GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAAAA

EPI_ISL_461458
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10088/2020
 ATTAAA1- T13C C241T C1059T C3037T C7564T G11083T C13252T C14408T A23403G G25563T G28376T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461459
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10089/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461460 MT683416
 2020-05-29 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-10090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T GG29861AA G29864A TG29867AA C29870A

EPI_ISL_461461
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C36T C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461462
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C36T C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T TT29858AA GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAA

EPI_ISL_461463
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10094/2020
 ATTAAAG1- T13C C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461464
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10102/2020
 ATTAAAGG1- T13C C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T T29859A GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461465
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T GG29861AA G29864A TG29867AA C29870A -29904AAAAAA

EPI_ISL_461467
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10108/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T GG29861AA G29864A TG29867AA C29870A -29904AAAAAA

EPI_ISL_461468
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10114/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C7564T G11083T C14408T C19524T A23403G G25563T G28376T T29859A GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAAAA

EPI_ISL_461469
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10117/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461470
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10118/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461471
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10127/2020
 ATTAAAGGTTTA1- T13C C241T GTT521- C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461472
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10128/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C7564T C8290T G11083T C14408T C17125T A23403G G25563T G28376T T29859A GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461473
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10129/2020
 AT1- T13C C241T C1059T C3037T C7564T C8290T G11083T C14408T A23403G G25563T G28376T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461474
 2020-05-29 2020-06-06
 United States hCoV-19/USA/WA-UW-10130/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461475 MT683417
 2020-05-29 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-10131/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C539T C1059T C3037T C7564T G11083T C14408T A23403G G25563T T27311C G28376T GG29861AA G29864A TG29867AA C29870A

EPI_ISL_461477 MT683418
 2020-05-29 2020-06-06
 United States SARS-CoV-2/human/USA/WA-UW-10138/2020
 ATTAAAGGTTTATACCTTC1- C20H C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T A29299T GG29861AA G29864A TG29867AA C29870A

EPI_ISL_461583
 2020-05-29 2020-06-06
 United Kingdom hCoV-19/England/CAMB-1B3CE9/2020
 C241T C1191T C3037T C14408T C16173T C19140T C19374T A23403G A28211G GGG28881AAC

EPI_ISL_461942
 2020-05-29 2020-06-06
 United Kingdom hCoV-19/England/NOTT-11192E/2020
 C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789-

EPI_ISL_461943
 2020-05-29 2020-06-06
 United Kingdom hCoV-19/England/NOTT-11193D/2020
 G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_461954
 2020-05-29 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111A49/2020
 C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789-

EPI_ISL_471621
 2020-05-29 2020-06-22
 India hCoV-19/India/CCMB_L1675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T G353T C1489T C3037T C5700A C9693T C10815T C14408T C15346A C16626T A23403G GGG28881AAC G29474T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471622
 2020-05-29 2020-06-22
 India hCoV-19/India/CCMB_L1684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G3774A G4354A C6573T C14408T A23403G C25528T C25693T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471623
 2020-05-29 2020-06-22
 India hCoV-19/India/CCMB_L1693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C5700A C14408T C16626T C19170T A23403G G29474T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471624
 2020-05-29 2020-06-22
 India hCoV-19/India/CCMB_L1694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C5700A C9693T C10815T C14408T C16626T C19170T A23403G GGG28881AAC G29474T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_472384
 2020-05-29 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111BFB/2020
 C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G G26426A C28093T GGG28881AAC TA29789-

EPI_ISL_473097
 2020-05-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1625FD/2020
 AT1- C241T C3037T T8944C C14408T C14741T A23403G

EPI_ISL_473126
 2020-05-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-162812/2020
 C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_473198
 2020-05-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-162D8C/2020
 ATT1- C241T C3037T C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_473230
 2020-05-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-162FD1/2020
 C241T C3037T C9438T C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_473249
 2020-05-29 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163116/2020
 AT1- C241T C3037T G10097A G11083T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_473371
 2020-05-29 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FAC8/2020
 C241T C3037T G10097A C10332T A12410G C14408T A23403G C23731T G26439T G26529T G28580T GGG28881AAC

EPI_ISL_473374
 2020-05-29 2020-06-23
 United Kingdom hCoV-19/England/BIRM-5FAF5/2020
 C241T C3037T G10097A C10332T A12410G C14408T A23403G C23731T G26439T G28580T GGG28881AAC

EPI_ISL_473825
 2020-05-29 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5661/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475461
 2020-05-29 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CE00E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3231T G7675T T8908C C14408T C22432T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477207
 2020-05-29 2020-06-29
 India hCoV-19/India/InStem_NCBS_0004/2020
 A1T T3C A5G G7C T10G ATA12GCT C16T -18CCGATC C241T C823T C3037T C14408T C18877T A23403G G25563T C26735T C26873T C26996T G29779T A29866G G29868A A29876G A29879T AA29881GG AA29886GG A29891G A29894G A29896T A29901G -29904AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

EPI_ISL_477307
 2020-05-29 2020-06-29
 United States hCoV-19/USA/MN-MDH-1218/2020
 ATTA1- C241T C1059T C3037T G13812T C14408T C16260T C21575T A23403G T25502C G25563T C28821A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_477308
 2020-05-29 2020-06-29
 United States hCoV-19/USA/MN-MDH-1219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C11750T C14408T C15324T C16260T C21575T A23403G G25563T C28821A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_481153
 2020-05-29 2020-07-02
 India hCoV-19/India/ILSCV31984/2020
 C241T C3037T A6311C A10323G C14408T G18769A A21194G A23403G G23608T C28163T C28311T GAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29734-

EPI_ISL_481154
 2020-05-29 2020-07-02
 India hCoV-19/India/ILSCV32007/2020
 C241T A563T C3037T G5572T C14408T C18877T C19813T A23403G A23971C G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483591
 2020-05-29 2020-07-08
 Singapore hCoV-19/Singapore/568/2020
 ATTA1- G72R C3176T C6310A C6312A G9500A G11083T C13730T G17427T C18894T C19524T C21575Y C23929T C28311T G29616T AAAAAAAAAAAA29892-

EPI_ISL_483592
 2020-05-29 2020-07-08
 Singapore hCoV-19/Singapore/569/2020
 ATTA1- C6310A C6312A G9500A G11083T C13730T G17427T C18894T C19524T C23929T C28311T G29616T AAAAAAAAAAAA29892-

EPI_ISL_485817 MT739425 MT913038
 2020-05-29 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0503/2020
 ATTAAAGGTTTATA1- G105T C241T C1059T C3037T C8892T C14408T G14511T C16260T A23403G G25563T G26690T C28821A

EPI_ISL_485818 MT739426 MT913039
 2020-05-29 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0506/2020
 A1- G105T C241T C1059T C3037T C8892T C14408T C16260T A23403G G25563T G26690T C28821A C29870A

EPI_ISL_485819 MT739427 MT913040
 2020-05-29 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0507/2020
 ATTA1- G105T C241T C1059T C3037T C8892T C12049T C14408T C16260T A23403G G25563T G26690T C28821A C29870A

EPI_ISL_485820 MT739428 MT913041
 2020-05-29 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G105T C241T C1059T C3037T C8892T C14408T C16260T A20298G A23403G G25563T G26690T C28821A C29870A

EPI_ISL_485821 MT739429 MT913042
 2020-05-29 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0510/2020
 ATT1- G105T C241T C1059T C3037T C8892T C14408T C16260T G16662A G17331T A23403G G25563T G26690T C28821A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_485822 MT739430 MT913043
 2020-05-29 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0511/2020
 ATTA1- G105T C241T C1059T C3037T C8892T C14408T C16260T A23403G G25563T G26690T C28821A C29870M

EPI_ISL_485823
 2020-05-29 2020-07-09
 United States hCoV-19/USA/VA-DCLS-0512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T AAGTCATTT686- C2571T C3037T C14408T A23403G G25947C C27500T G28068T GGG28881AAC G29395A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_485824
 2020-05-29 2020-07-09
 United States hCoV-19/USA/VA-DCLS-0513/2020
 A1- C241T AAGTCATTT686- C2571T C3037T C14408T A23403G C27500T G28068T GGG28881AAC G29395A

EPI_ISL_485825 MT739431 MT913044
 2020-05-29 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0523/2020
 AT1- C241T C1059T C3037T C14408T C14925T A23403G G25563T

EPI_ISL_485826 MT739432 MT913045
 2020-05-29 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C2062T C3037T C14408T C14925T A23403G G25563T G25641C C29870A

EPI_ISL_485827 MT739433 MT913046
 2020-05-29 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0525/2020
 C241T C1059T C3037T T9454C T9518C A10286G C14408T C14925T A23403G G25563T G25641C

EPI_ISL_485828 MT739434 MT913047
 2020-05-29 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0526/2020
 C241T C1059T C3037T C14408T C14925T A23403G G25563T A27770G C29545T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_485829 MT739435 MT913048
 2020-05-29 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0527/2020
 ATTA1- C241T C1059T C3037T C14408T C14925T TTA21991- A23403G G25563T G25641C

EPI_ISL_485830 MT739436 MT913049
 2020-05-29 2020-07-09
 United States SARS-CoV-2/human/USA/VA-DCLS-0528/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T C14925T A23403G G25563T G25641C C29870A

EPI_ISL_487109
 2020-05-29 2020-07-13
 Nigeria hCoV-19/Nigeria/OS589-CV46/2020
 ATTAAA1- C241T C1594T C3037T C11109T C14408T G16741T CTTTACTTG22281- C23127T A23403G G25563T C25721T G27441T

EPI_ISL_489841 EPI_ISL_491037
 2020-05-29 2020-07-14
 Romania hCoV-19/Romania/ROSV_11161/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C955T C3037T C14408T A20268G C22444T A23403G A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_490101
 2020-05-29 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC90685/2020
 ATTAAAGGTTTAT1- C241T C2841T C3037T C3666T C4002T T4693C G10097A C12534T C13536T C14408T C17766T C21597T A23403G G23593T C23731T GGG28881AAC G28908T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_490102
 2020-05-29 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC94436/2020
 ATTAAAG1- C186T C241T C3037T C3373A C14408T C17288T A23403G C28695T TAGGGGAACTTCTCCTGC28879- AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875C

EPI_ISL_490103
 2020-05-29 2020-07-15
 Malaysia hCoV-19/Malaysia/IMR_WC94764/2020
 ATTAAAGGTTT1- C241T C3037T C4965T A5553G C14408T C18877T A23403G G25563T A26093T A29880C AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_490250
 2020-05-29 2020-07-15
 United Kingdom hCoV-19/England/202822194/2020
 C241T C313T G599A T2153A C3037T G4422A C14408T A23403G G26589C A27083G C27128T GGG28881AAC

EPI_ISL_492007
 2020-05-29 2020-07-18
 Oman hCoV-19/Oman/205039772/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T C20132T A23403G C25452T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_492008
 2020-05-29 2020-07-18
 Oman hCoV-19/Oman/205039788/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C8140T C14408T A23403G C26801T T28135C GGG28881AAC G29024T C29614T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_492035
 2020-05-29 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_2517/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A14856G G22604T A23403G C25433T T27299C GGG28881AAC T29148C T29848A A29850C AG29852TA CTTAGGAG29857- GA29868CT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_492046
 2020-05-29 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_58090/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G2447T C3037T G4148T C14408T A15269G C18329T C22987T A23403G C25904T T27299C GGG28881AAC T29148C G29861T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_492047
 2020-05-29 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_58110/2020
 T2C AAGGTTTATACCTTCCCAGGT5- C241T C3037T T5065A C12400T C14408T G17608T C19343T A23403G T27299C GGG28881AAC T29148C G29861T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_492200
 2020-05-29 2020-07-20
 United Kingdom hCoV-19/England/CAMB-1B3E89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T C14408T C16173T C19140T C19374T A23403G G26620C A28211G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493629
 2020-05-29 2020-07-21
 United Kingdom hCoV-19/England/PORT-2CFF68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3403T A6308C C14408T T19839C TGG21294AAA A23403G G25793T C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494221
 2020-05-29 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1682A5/2020
 ATTAAA1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_495163
 2020-05-29 2020-07-22
 India hCoV-19/India/CCMB_L1657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G124A C241T C313T C3037T C5700A G6476T C9693T C10815T C14408T C16626T A23403G C25587G GGG28881AAC G29474T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_496076 MT834315
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1650/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C15933T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496077 MT834322
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1651/2020
 A1- C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_496078 MT834025
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1652/2020
 AT1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496079 MT833968
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1653/2020
 ATTAAAG1- C241T C3037T C3992T G4288T G4510T C14408T C15933T T19839C A23403G T25451C G25489T A27489T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496080 MT833976
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1654/2020
 A1- C241T C3037T C7195T C14408T C15933T G16968T T19839C A23403G G25654T GGG28881AAC C29719T C29784T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_496081 MT834136
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1655/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15240T C15933T G16968T T19839C A23403G C26607T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496082 MT834343
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1656/2020
 C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496083 MT834003
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1657/2020
 AT1- C241T T1215C C3037T G8075A G10996T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_496084 MT834321
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1658/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496085 MT834124
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1659/2020
 ATTAAAGGTTTAT1- C241T C3037T G10996T C15933T G16968T T19839C A23403G C26607T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496086 MT834326
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1660/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T G15444T G21232A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_496087 MT834094
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1661/2020
 AT1- C241T C1968T C3037T G3345T C14408T C15933T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_496088 MT834128
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1662/2020
 AT1- C241T C3037T C14408T C15352T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496089 MT834185
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1663/2020
 ATTAAAGG1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_496090 MT834201
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1664/2020
 ATTAAAGGTTT1- C241T C1204T G1747A C3037T C14408T C16289T C17745T C22675T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496091 MT834328
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1665/2020
 AT1- C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496096 MT834108
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1670/2020
 AT1- C241T C3037T C14408T C15933T G16968T C17304T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496098 MT834104
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1672/2020
 AT1- C241T G343T C3037T C14408T C15933T G16968T C17010T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496099 MT834099
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1673/2020
 A1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_496100 MT834275
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1674/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G26428T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496101 MT834253
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1675/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G26428T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496102 MT834125
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1676/2020
 ATTAAAGGTTTAT1- C241T C3037T A6520G C13860T C14408T C15933T G16968T T19839C A23403G G28048T GGG28881AAC C29119T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496103 MT834048
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1677/2020
 ATTAAAGG1- C241T C3037T A6520G C13860T C14408T C15933T G16968T T19839C A23403G G28048T GGG28881AAC C29119T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496104 MT834021
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1678/2020
 ATTAAAG1- C241T C3037T A6520G C13860T C14408T C15933T G16968T T19839C A23403G G28048T GGG28881AAC C29119T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496105 MT834033
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1679/2020
 AT1- C241T T1837C C3037T A4197G C14408T G16813A A23403G G28048T GGG28881AAC C29119T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_496106 MT833966
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1680/2020
 AT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C C22591T A23403G G25249T G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_496107
 2020-05-29 2020-07-24
 United States hCoV-19/USA/WA-S1681/2020
 ATT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_496108 MT833990
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1682/2020
 AT1- C241T C3037T G8075A G10996T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496111 MT834256
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1685/2020
 ATTAAAGGTTT1- C241T T2454C C3037T C14408T C15933T G19009T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496319 MT834193
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1893/2020
 ATTAAAGGTT1- C241T C3037T C6285T C6445T C14408T G16813A A23403G T28144C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496329 MT834242
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1903/2020
 ATTAAAGGTTT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496330 MT834236
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1904/2020
 ATTAAAGG1- G701T C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C C28292A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496331 MT834324
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1905/2020
 AT1- C241T C1059T C3037T C14408T G16912T C21736T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496332 MT834028
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1906/2020
 AT1- C241T C3037T G8075A G10996T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496333 MT834311
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1907/2020
 ATTAAAGGTTTAT1- C241T C3037T A4197G C14408T G16813A A23403G G24368C T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496334 MT834184
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1908/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T G16968T T19839C C20428T C21575T T22378C A23403G C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496336 MT834252
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1910/2020
 ATTAAA1- C241T C3037T G3345T C14408T C15933T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_496337 MT834039
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1911/2020
 AT1- C241T C3037T G8075A G10996T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496338 MT834109
 2020-05-29 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1912/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A21215G A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_501056
 2020-05-29 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106DE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T A5311G C12076T C14408T C17678T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508157
 2020-05-29 2020-08-04
 India hCoV-19/India/AR10/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C313T C3037T C14408T A16719G C19017T G21468T A23403G GGG28881AAC G29868A

EPI_ISL_508158
 2020-05-29 2020-08-04
 India hCoV-19/India/AR11/2020
 ATTAAAGGTTTATACC1- C241T C3037T C3397T C3634T A9436G C10039T T12835C C14408T C15324T A22459T C22675T A23403G G29868A

EPI_ISL_508178
 2020-05-29 2020-08-04
 India hCoV-19/India/AR30/2020
 ATTAA1- C241T C313T C3037T T8665A C14408T C19983T A23403G GGG28881AAC G29868A

EPI_ISL_508179
 2020-05-29 2020-08-04
 India hCoV-19/India/AR31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C313T C3037T T8665A C14408T C19983T A23403G GGG28881AAC G29868A

EPI_ISL_508205
 2020-05-29 2020-08-04
 India hCoV-19/India/AR8/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C313T C3037T C14408T A16719G A18825G C19017T G21468T A23403G A26319G GGG28881AAC G29868A

EPI_ISL_508436
 2020-05-29 2020-08-04
 India hCoV-19/India/MW33/2020
 ATTAAAGGTTTATACCTTCCCA1- T134C C241T C313T C3037T C5700A C14408T C20719T A23403G G28655T GGG28881AAC G29868A

EPI_ISL_508754 MT834661
 2020-05-29 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T6853C C7728T C10188T C14408T C21191T T22220C T23221A A23403G C23701T T24982C G25563T C27964T G28817A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_508755 MT834662
 2020-05-29 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0552/2020
 AT1- C241T C1059T C3037T C8327T C10188T C14408T C21191T T22220C T23221A A23403G C23701T T24982C G25563T C27964T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_509118
 2020-05-29 2020-08-05
 United States hCoV-19/USA/WA-OHSU-0366/2020
 A1- C241T C3037T C14408T C15933T T19839C A23403G T27384C GGG28881AAC

EPI_ISL_509119
 2020-05-29 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0367/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC

EPI_ISL_509120
 2020-05-29 2020-08-05
 United States hCoV-19/USA/OR-OHSU-0369/2020
 C241T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_509826 MT846510
 2020-05-29 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T C18312T T19839C A23403G C23707T G25249T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509827 MT846511
 2020-05-29 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T C18312T T19839C A23403G C23707T G25249T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509828 MT846512
 2020-05-29 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T T19839C A23403G C23707T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_511822
 2020-05-29 2020-08-08
 United States hCoV-19/USA/CA-IGI-0068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C241T C3037T C14408T A23403G T26083G G28378T GGG28881AAC AC29869-

EPI_ISL_511853
 2020-05-29 2020-08-09
 United States hCoV-19/USA/WA-UW-10034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTC1- C241T C1059T C3037T C7564T G11083T C14408T G22899T A23403G G25563T G28376T T29859A GG29861AA G29864A TG29867AA C29870A

EPI_ISL_511854
 2020-05-29 2020-08-09
 United States hCoV-19/USA/WA-UW-10038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T T29859A GG29861AA G29864A TG29867AA C29870A

EPI_ISL_511855
 2020-05-29 2020-08-09
 United States hCoV-19/USA/WA-UW-10101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T T29859A GG29861AA G29864A TG29867AA C29870A

EPI_ISL_511856
 2020-05-29 2020-08-09
 United States hCoV-19/USA/WA-UW-10105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACT1- C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T GG29861AA G29864A TG29867AA C29870A

EPI_ISL_512086
 2020-05-29 2020-08-10
 United States hCoV-19/USA/WA-UW-10116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C7564T G11083T C14408T A23403G G25563T G28376T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_512163
 2020-05-29 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1747/2020
 AT1- C241T T595C C1059T G2210A C3037T G6008A T6654C T9784C C11074T C12008T G12662A C14408T A23403G C23435T G25563T C25626G G26391A C26801T G28931A

EPI_ISL_512176
 2020-05-29 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A2497G C3037T C14408T A20268G C23277T A23403G T24076C C28854T

EPI_ISL_513767 MW035962
 2020-05-29 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G1999T C3037T C8326Y C14408T C16480A G16843T A20268G C21110Y T21995Y A23403G A25253G G25720T C28854T

EPI_ISL_514760
 2020-05-29 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2357/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_514761
 2020-05-29 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2358/2020
 ATTAAAGG1- C241T C1059T T1831C C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514762
 2020-05-29 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2359/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514763
 2020-05-29 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2360/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C15842T C16650T T18408C A20675T A23403G G25563T C25571T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_521875 MT972114
 2020-05-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A G11083T C13730T A20742G G23401T C23929T C28311T

EPI_ISL_521879 MT972118
 2020-05-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C6651T C14408T C18555T C18744T G20580T G23015C A23403G G25563T C25572T A27137G

EPI_ISL_522869 MT843316
 2020-05-29 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T179C C241T G943A C1059T G2447T C3037T C14408T C16260T A19153G C19488T C22570T A23403G G25563T G26690T A28742G C28821A

EPI_ISL_522870 MT843317
 2020-05-29 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0123/2020
 A1- A4G C21T T179C C241T C1059T C3037T C14408T C16260T A19153G C19488T C22570T A23403G G25563T G26690T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_523124
 2020-05-29 2020-08-26
 Netherlands hCoV-19/Netherlands/DR-EMC-6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4386G C10369T C14408T C20148T A23403G C25792T G28985T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523125
 2020-05-29 2020-08-26
 Netherlands hCoV-19/Netherlands/DR-EMC-7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G C18348T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523143
 2020-05-29 2020-08-26
 Netherlands hCoV-19/Netherlands/FR-EMC-51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T T19022C C20930T A23403G C27208T G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523169
 2020-05-29 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G343T C3037T A10323G C14408T T15696G T21765C A23403G GTTAATCCAGTA26158- GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523191
 2020-05-29 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C13501T C14408T C15981T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523192
 2020-05-29 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C15981T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523193
 2020-05-29 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C15981T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523195
 2020-05-29 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15277T C21621T A23403G GGG28881AAC G28904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523246
 2020-05-29 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T13006C C14408T C17550T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523247
 2020-05-29 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523449
 2020-05-29 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C15981T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523450
 2020-05-29 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G C19269T A23403G G25500T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523451
 2020-05-29 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524020
 2020-05-29 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-18574V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C14408T C19032T A23403G C23638T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524021
 2020-05-29 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-18663V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524815
 2020-05-29 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C12774T C14408T A22320G G22349A A23403G G25244T G25563T C26447T C26735T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524829
 2020-05-29 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2832G C3037T G3518T C10450T C13536T C14408T T16185C A23403G T29672C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524832
 2020-05-29 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C8389T G9705T G11521A C14408T A23403G G25563T C27964T G28899A G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524836
 2020-05-29 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C10789T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524842
 2020-05-29 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524844
 2020-05-29 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T G1495T C3037T A6512C C10681T C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524845
 2020-05-29 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T G1495T C3037T G5230T A6512C C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524848
 2020-05-29 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524849
 2020-05-29 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G G13201A C14408T A23403G C26256T G27987T C29668T G29755T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524857
 2020-05-29 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1221T C2939T C3037T T11698C C14408T C17274T A23403G C23934A A27146T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526844
 2020-05-29 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C14925T A23403G G25563T C29870A

EPI_ISL_528809
 2020-05-29 2020-09-09
 India hCoV-19/India/AP-CCMB-GC41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G2890A C3037T G4354A C6573T C12439T C14408T G23120T A23403G G25314T C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_530111
 2020-05-29 2020-09-10
 Spain hCoV-19/Spain/MD-R65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A T11568C C14805T G22111T G25979T T28144C C28657T C28863T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_535043
 2020-05-29 2020-09-14
 United Kingdom hCoV-19/England/SHEF-C0998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26735T C27143T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535047
 2020-05-29 2020-09-14
 United Kingdom hCoV-19/England/SHEF-C1487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T14466C G21593A A23403G C27999T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535087
 2020-05-29 2020-09-14
 United Kingdom hCoV-19/England/SHEF-CEBEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T T13950C C14408T T15051C A20255G A23403G A27507T GGG28881AAC G29465T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535349 MT997987
 2020-05-29 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-2111/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535350 MT997988
 2020-05-29 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-2112/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535351 MT997768
 2020-05-29 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-2119/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535352 MT997989
 2020-05-29 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-2122/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535353 MT997990
 2020-05-29 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-2145/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535354 MT997991
 2020-05-29 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-2147/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535355 MT997992
 2020-05-29 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-2148/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535356 MT997993
 2020-05-29 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-2149/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535357 MT997769
 2020-05-29 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-2153/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535358 MT997994
 2020-05-29 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-2155/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_537523
 2020-05-29 2020-09-16
 United States hCoV-19/USA/CA-UCLA-216/2020
 A1- C241T C635T C1059T C1913T C3037T C3457T C6040T G8615A G10986T C11916T C14408T C18998T G19947T A20262G C21658T A23403G G25563T A25573G G29540A GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_537561
 2020-05-29 2020-09-16
 United States hCoV-19/USA/CA-UCLA-29/2020
 A1- C241T C379A C1059T C1170T C3037T C14408T A14862G C22224T A23403G G25563T T27318A G28703T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_541158
 2020-05-29 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1234/2020
 A1- C241T C3037T A13685G C14408T T19839C A23403G A23416T G25494T G27993A G28209T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_545243
 2020-05-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-2323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1890A C3037T C14408T C20474T A23403G C25708T G27074T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545244
 2020-05-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-2325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2102T C3037T C6606T C10188T G12332T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545269
 2020-05-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-2371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T C23320T A23403G C26151T C26954T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545271
 2020-05-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-2375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1912T C3037T A7863G C10319T C14408T A23403G G25563T G25641T C27964T C28849T C28868T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545282
 2020-05-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-2390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21812T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545316
 2020-05-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-2450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2657C C3037T C6638T C8208T C10319T C14408T A21137G A23403G G25563T C27964T G29703T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545321
 2020-05-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-2459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1890A C3037T C14408T C20474T A23403G C25708T G27074T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545325
 2020-05-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-2465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A9524G G9595A C14408T A17406G G18973T A23403G G25563T T26394C C26625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545326
 2020-05-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-2466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C1059T C3037T C12781T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545328
 2020-05-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-2471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T A5689T G12092T C14408T C16017T A23403G G27561T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT843319
 2020-05-29 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C8447A C14408T A20755C A23403G C24382T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MT843320
 2020-05-29 2020-08-05
 United States SARS-CoV-2/human/USA/MD-MDH-0126/2020
 A1- C241T C3037T T9172C A10948G C14408T G20134A A23403G G26730T GGG28881AAC T29859A G29862A

MW001247
 2020-05-29 2020-09-14
 United States SARS-CoV-2/human/USA/228-NP-OP/2020
 C241T C1059T C3037T T7386C C14408T G18255T G21986A A23403G A23994C G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW001249
 2020-05-29 2020-09-14
 United States SARS-CoV-2/human/USA/228-Saliva/2020
 C241T C1059T C3037T T7386C C14408T G18255T G21986A A23403G A23994C G25563T AAAAAAAAAAAAAAAAAAAAA29883-

MW001281
 2020-05-29 2020-09-14
 United States SARS-CoV-2/human/USA/272-ETA/2020
 C241T T1918C C3037T C6388T C14408T C18877T C23230T A23403G G25563T C28609T AAAAAAAAAAAAAAAAAAAAA29883-

MW001283
 2020-05-29 2020-09-14
 United States SARS-CoV-2/human/USA/272-NP-OP/2020
 C241T T1918C C3037T C6388T C14408T C18877T C23230T A23403G G25563T C28609T AAAAAAAAAAAAAAAAAAAAA29883-

MW023418
 2020-05-29 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1234/2020
 A1- C241T C3037T A13685G C14408T T19839C A23403G A23416T G25494T G27993A G28209T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_461476
 2020-05-30 2020-06-06
 United States hCoV-19/USA/WA-UW-10136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T A1255G C3037T T6046C C14408T G16912T C17156T A23403G G25563T G29553A GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_461582
 2020-05-30 2020-06-06
 United Kingdom hCoV-19/England/CAMB-1B3C61/2020
 C241T C1191T C3037T C14408T C16173T C19140T C19374T A23403G A28211G GGG28881AAC

EPI_ISL_461586
 2020-05-30 2020-06-06
 United Kingdom hCoV-19/England/CAMB-1B3E3E/2020
 C241T A1124G C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CTA28896-

EPI_ISL_461587
 2020-05-30 2020-06-06
 United Kingdom hCoV-19/England/CAMB-1B3E7A/2020
 C241T C1191T C3037T C14408T C16173T C19140T C19374T A23403G G26620C A28211G GGG28881AAC

EPI_ISL_461945
 2020-05-30 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111979/2020
 C241T G1874T C3037T C8683T G11083T C14408T T19755C G21624T A23403G C28093T GGG28881AAC TA29789-

EPI_ISL_462995 MT576025
 2020-05-30 2020-06-06
 Spain SARS-CoV-2/human/ESP/COVID-67_20/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C14408T A20268G A23403G C29708T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_462996 MT576026
 2020-05-30 2020-06-06
 Spain SARS-CoV-2/human/ESP/COVID-68_19/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C14408T A20268G T21838C A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_462997 MT576027
 2020-05-30 2020-06-06
 Spain SARS-CoV-2/human/ESP/COVID-80_19/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T G1563T C3037T C14408T A20268G G22199T A23403G C27573T G29734C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_462998 MT576028
 2020-05-30 2020-06-06
 Spain SARS-CoV-2/human/ESP/COVID-86_17/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C3037T C14408T A18174G A20268G A23403G A25998G C29625T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_462999 MT576029
 2020-05-30 2020-06-06
 Spain SARS-CoV-2/human/ESP/2019-nCoV-MN908947-cOVID-96_19/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G C20402T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_463000 MT576030
 2020-05-30 2020-06-06
 Spain SARS-CoV-2/human/ESP/COVID-100_20/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A20268G C20402T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_467494
 2020-05-30 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2164C C3037T C14408T A20268G A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_467495
 2020-05-30 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C16376T A23403G C24034T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_467496
 2020-05-30 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2164C C3037T C14408T A20268G A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_467497
 2020-05-30 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0147/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T G2164C C3037T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_467498
 2020-05-30 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0148/2020
 AT1- C241T C3037T C14408T A19462G A23403G G25644T G25753T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467499
 2020-05-30 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C23625T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_467500
 2020-05-30 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0150/2020
 ATTA1- C241T C3037T T6775C C14408T C16971T C18795T T19839C A21137G A23403G C24099T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_471625
 2020-05-30 2020-06-22
 India hCoV-19/India/CCMB_L1721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C5700A C9693T C14408T C16626T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471626
 2020-05-30 2020-06-22
 India hCoV-19/India/CCMB_L1724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C832T C1912T C3037T C5700A C9693T C14408T C16626T A23403G C27509T GGG28881AAC G29474T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471627
 2020-05-30 2020-06-22
 India hCoV-19/India/CCMB_L1726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C832T C1912T C3037T C5700A C9693T C10815T C14408T C16626T A23403G GGG28881AAC G29474T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471628
 2020-05-30 2020-06-22
 India hCoV-19/India/CCMB_L1728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C832T C1912T C3037T C5700A C9693T C10815T C14408T C16626T G22567A A23403G GGG28881AAC G29474T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_473238
 2020-05-30 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-163055/2020
 C241T G1738T C3037T C13862T C14408T A23403G C27493T G28396T C28836T C29724T

EPI_ISL_475348
 2020-05-30 2020-06-23
 United Kingdom hCoV-19/England/SHEF-C0D50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14184A C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477130
 2020-05-30 2020-06-28
 Bangladesh hCoV-19/Bangladesh/CHRF_0017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T ATG518- A1163T C1912T C3037T C14408T A23122W A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477131
 2020-05-30 2020-06-28
 Bangladesh hCoV-19/Bangladesh/CHRF_0020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G614T A1163T C2040T C3037T G7693K C14408T G19723T A23403G G24834A C25504G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477204
 2020-05-30 2020-06-29
 Italy hCoV-19/Italy/CEINGE-Naples1/2020
 ATTA1CCACCG A6G -TT8CCACGCGGAGTACGATCAG A12G C241T C3037T C14408T T22099C A23403G G25340C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_478289
 2020-05-30 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D675F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478290
 2020-05-30 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D676E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478291
 2020-05-30 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D677D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T C21575T C22858T A23403G GGG28881AAC TTTTCCG29581-

EPI_ISL_478292
 2020-05-30 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D67AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478293
 2020-05-30 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D67B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478294
 2020-05-30 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D67C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478295
 2020-05-30 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D67D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478296
 2020-05-30 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D67E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478297
 2020-05-30 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D67F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478298
 2020-05-30 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478299
 2020-05-30 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480641 MT745629
 2020-05-30 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC1891/2020
 C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_481156
 2020-05-30 2020-07-02
 India hCoV-19/India/ILSCV32465/2020
 C1101T G27758A T27760A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481968
 2020-05-30 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DDF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C13384Y C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481984
 2020-05-30 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DD50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C14408T C19524T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482002
 2020-05-30 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DE5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484378
 2020-05-30 2020-07-08
 United Kingdom hCoV-19/England/NOTT-1123F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A6375G A10948G G13921T C14408T C21736T A23403G G24926T C25665T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484388
 2020-05-30 2020-07-08
 United Kingdom hCoV-19/England/NOTT-11250B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484389
 2020-05-30 2020-07-08
 United Kingdom hCoV-19/England/NOTT-11251A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9979T C14408T C21627T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484665
 2020-05-30 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR3876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A G12163A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484667
 2020-05-30 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR3878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A363G C2146T C3037T C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484882 MT750089
 2020-05-30 2020-07-08
 United States SARS-CoV-2/human/USA/IL-UW-507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489076
 2020-05-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-292881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C2306T C3037T C11747Y A14061G C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489085
 2020-05-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2928AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C2306T C3037T A14061G C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489099
 2020-05-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-2928BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C2306T C3037T A14061G C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489121
 2020-05-30 2020-07-14
 United Kingdom hCoV-19/England/NORT-292854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6659G A9553G G10097A C14408T G16696A A23403G C23731T C25714T C25771T C27739T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489711 MT757110
 2020-05-30 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0302/2020
 ATT1- C241T C313T C823T C3037T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_489712 MT757111
 2020-05-30 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0303/2020
 ATTA1- C241T C313T C823T C3037T A11023G C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_492009
 2020-05-30 2020-07-18
 Oman hCoV-19/Oman/205039804/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T A23403G C27005T GGG28881AAC ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815T

EPI_ISL_493492
 2020-05-30 2020-07-21
 United Kingdom hCoV-19/England/NORT-29B387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494554 MT856689
 2020-05-30 2020-07-22
 United States SARS-CoV-2/human/USA/SC-USC-PRG505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7153C C14408T C16349T A16373C C21110T A23403G G25563T C27964T C28846T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_496097 MT834014
 2020-05-30 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1671/2020
 AT1- C241T C3037T C10189T C14408T C15933T G16968T T19839C A23403G G28080A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496112 MT834057
 2020-05-30 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1686/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C25710T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496113 MT834169
 2020-05-30 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1687/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496114 MT834164
 2020-05-30 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1688/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G26428T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496115 MT833989
 2020-05-30 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1689/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_496116 MT834217
 2020-05-30 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1690/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_496117 MT834101
 2020-05-30 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1691/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496122 MT833979
 2020-05-30 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1696/2020
 A1- C241T A2127G C3037T C14408T C15933T G16968T T19839C G21004T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_496123 MT834040
 2020-05-30 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1697/2020
 ATTAAAGGTTT1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G C24904T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_501023
 2020-05-30 2020-07-30
 United Kingdom hCoV-19/Northern Ireland/NIRE-106F57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C6026Y C14408T A23403G GGG28881AAC G29745C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508166
 2020-05-30 2020-08-04
 India hCoV-19/India/AR19/2020
 ATTAAAGGTTTATAC1- C241T G2076A C3037T C3634T G11083T C14408T C15324T G17964T A23403G G29868A

EPI_ISL_508167
 2020-05-30 2020-08-04
 India hCoV-19/India/AR2/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C3397T C3634T A9436G C10039T T12835C C14408T C15324T A22459T C22675T A23403G G29868A

EPI_ISL_508172
 2020-05-30 2020-08-04
 India hCoV-19/India/AR24/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1441T T1947C C3037T G6446T C14408T C18877T C22444T A23403G T25556G G25563T C26735T C28854T G29402T

EPI_ISL_508204
 2020-05-30 2020-08-04
 India hCoV-19/India/AR7/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC G29868A

EPI_ISL_509829 MT846513
 2020-05-30 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1413T C1498T C3037T G4403A G7641A C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512430
 2020-05-30 2020-08-11
 United Kingdom hCoV-19/England/PORT-2F5DBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T484C C1059T C3037T A14199T C14408T A23403G G23593T T24529C GG25203TT G25217T G25563T C29119T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514766
 2020-05-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2363/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C15842T C16650T T18408C A20675T A23403G G25563T C25571T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_514767
 2020-05-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2364/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C15842T C16650T T18408C A20675T A23403G G25563T C25571T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514768
 2020-05-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2365/2020
 ATTAAAGGTTTATAC1- C241T C1059T T1831C C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_514769
 2020-05-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2366/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C15842T C16650T T18408C A20675T A23403G G25563T C25571T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_514771
 2020-05-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2368/2020
 ATTAAA1- C241T C1059T T1831C C3037T C11916T C14408T C16650T A20675T A23403G G25563T G27758T G29179T G29779T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_514772
 2020-05-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2369/2020
 ATTAAAGGTTT1- C241T C1059T T1831C C3037T C11916T C14408T C16650T C17491T A18682G A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_520676
 2020-05-30 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L2005036714/2020
 C241T C3037T C14408T A23403G T27504C GGG28881AAC

EPI_ISL_520708
 2020-05-30 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290361549/2020
 C241T C3037T C3373A C7564T C11195T C14408T A17472G C20016T A22459T A23403G T26978C G28580T GGG28881AAC

EPI_ISL_520709
 2020-05-30 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290362429/2020
 C241T C3037T G5924A C6906T C14408T G15906T T21775G A23403G GGG28881AAC C29171T

EPI_ISL_520710
 2020-05-30 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3290363526/2020
 G5194T C8782T G11230T T14394C G25273T T28144C G28167A T28465C G28878A G29742A

EPI_ISL_521884 MT972123
 2020-05-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1141T C1426T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_523097
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-5-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C379T T514C ATG1605- C17410T C20938A C22088T A23064C C26078T C29409T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523098
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-6-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T G8382T G11083T C11109T G12795A C12855T C14408T G22332A A23403G G25563T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523099
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-6-14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T T3203C G11083T C11109T G12795A C14408T A23064C A23403G G24057A G25563T C28826T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523100
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-6-15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C3602T A9453G G11083T C11109T G12794A C14408T TTTTGGGTG21981- T23018C A23403G G25563T C25936T C28512T G28936T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523101
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-6-16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C3602T G11083T C11109T T11431C G12794A C14408T T23018C A23403G G25563T C28512T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523102
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-6-17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C11750T G12795A C14408T A23403G G25563T G28903T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523103
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-6-18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C3602T G11083T C11109T G12794A C14408T C21396T T23018C A23403G G25563T G28077T C28512T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523104
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-6-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T A2280C C3037T C3602T C7788A C11109T G12794A C14408T T23018C A23403G G25563T C25936T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523105
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-6-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T A2280C C3037T C3602T C7788A C11109T G12794A C14408T T23018C A23403G G25563T C25936T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523106
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-6-7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C3602T G11083T C11109T G12794A C14408T T23018C A23403G G25563T C28512T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523107
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-7-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T G4207T C7732T C11109T C11886T G12794A C14408T A23403G G25563T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523108
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-7-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T G4207T C7732T C11109T G12794A A13187G C14408T A23403G G25563T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523109
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-7-19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T G4207T C7732T C11109T G12794A C14408T A23403G G25563T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523110
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-7-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T G4207T C7732T C11109T G12794A C14408T A23403G G25563T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523111
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-7-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T G4207T C7732T C11109T G12794A C14408T A23403G G25563T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523112
 2020-05-30 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-7-6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C3876T G4207T C7732T T9774C C11109T G12794A C14408T A23403G G25555A G25563T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525152
 2020-05-30 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T G3563T C6541T C11379T C14408T C15026T T20105G A22320G A23403G A25165T G25563T C27964T G28373T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525158
 2020-05-30 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C2704T C2939T C3037T T11698C G12395A C14408T G16935T G17562T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525159
 2020-05-30 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T C6541T C11379T C14408T C17125T A19175C T19839C A22320G A23403G G25523T G25563T C27964T T29685G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525166
 2020-05-30 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C683T G1495T C3037T G5230T A6512C C14408T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528820
 2020-05-30 2020-09-09
 India hCoV-19/India/TG-CCMB-GC43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G4354A C6573T C12439T C14408T G23120T A23403G G25314T C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529681
 2020-05-30 2020-09-10
 United Kingdom hCoV-19/England/SHEF-C6EB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T14466C G21593A A23403G C27999T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530112
 2020-05-30 2020-09-10
 Spain hCoV-19/Spain/MD-R67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G28881A ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_535095
 2020-05-30 2020-09-14
 United Kingdom hCoV-19/England/SHEF-D1B25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535096
 2020-05-30 2020-09-14
 United Kingdom hCoV-19/England/SHEF-D1CC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539487
 2020-05-30 2020-09-18
 India hCoV-19/India/PB-IMT-L178/2020
 ATT1- T1871C C3990A C6312A A9235T G11083T C13730T G16181T C23929T G28122T C28311T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29730-

EPI_ISL_543930
 2020-05-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-3010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24197T GGG28881AAC G29224T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543931
 2020-05-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-3011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8105T C8123T C14408T A23403G G24812T C24919T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543933
 2020-05-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-3013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8105T C8123T C14408T A23403G G24812T C24919T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543936
 2020-05-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-3016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24197T GGG28881AAC G29224T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543940
 2020-05-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-3022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24197T GGG28881AAC G29224T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543943
 2020-05-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-3025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15438T A18818G A23403G G25494T G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543944
 2020-05-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-3026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2262T C3037T C8157T C10029T C14408T G17808T C21196A A23403G G25563T C27964T C28253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543946
 2020-05-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-3032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543947
 2020-05-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-3033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3671A C8099T C9967T C14408T C17004T C21846T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545255
 2020-05-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-2342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A7085G C14408T G17058T G17808T C21196A A23403G G25563T C27874T C27964T T28340C A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545314
 2020-05-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-2447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T T20037C A23403G G25563T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545330
 2020-05-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-2473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545340
 2020-05-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-2495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24197T GGG28881AAC G29224T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559331
 2020-05-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-496593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C25731T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

LR877404
 2020-05-30 2020-08-17
 Poland covid_hub_pl_ibch_0026
 

MT955169
 2020-05-30 2020-08-29
 Tunisia SARS-CoV-2/human/TUN/TUN_ADAGE_EZ432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C9214T C10456Y C10889T C14408T C23127T A23403G G25563T C25821T C27630Y A27700W

EPI_ISL_461947
 2020-05-31 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1119A6/2020
 C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789-

EPI_ISL_461949
 2020-05-31 2020-06-06
 United Kingdom hCoV-19/England/NOTT-1119C4/2020
 C241T C1862T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_464163
 2020-05-31 2020-06-11
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_064/2020
 C241T A1163T C2358T C3037T G8612T G11083T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_464166
 2020-05-31 2020-06-11
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_062/2020
 C241T A1163T C3037T A4503T C4540T G5194T C14408T A23403G GGG28881AAC

EPI_ISL_467519
 2020-05-31 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- T205C C241T C3037T C14408T C15324T A23403G C24034T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_472018
 2020-05-31 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F84A/2020
 C241T C3037T C14408T A23403G C26606T C28290T

EPI_ISL_472019
 2020-05-31 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F886/2020
 C241T C3037T C7764T C9474T C14408T C15237T A23403G C26133T GGG28881AAC T29753C

EPI_ISL_472020
 2020-05-31 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F895/2020
 C241T C3037T C14408T C16616T C21575T C22498T A23403G GGG28881AAC C29614T

EPI_ISL_473934
 2020-05-31 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6319/2020
 C241T C3037T C14408T A20268G A23403G C28854T

EPI_ISL_477794
 2020-05-31 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B3F95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T A9741G C14408T A23403G TTTAAAGTTTCCATTTGGAATC27265- G28514T G28827A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478122
 2020-05-31 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3126G C10038T C10798A T11075C C13862T T14392G C14408T C14937T A23403G T27296C C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478301
 2020-05-31 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D684D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478305
 2020-05-31 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4180C C13860T C14408T C22450T A23403G G26849T GGG28881AAC A28911T A29467C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478306
 2020-05-31 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2983T C3037T C7834T C14408T C16997T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478307
 2020-05-31 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D68A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479553
 2020-05-31 2020-06-30
 India hCoV-19/India/NIV-47470/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C8240T C11747T C14408T C18657T T21183A A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_481898
 2020-05-31 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DB56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7851T G8179T C14408T C20233T A23403G G25563T G28028T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_481975
 2020-05-31 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DD9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T A7766G G7873T C9365T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482011
 2020-05-31 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DE02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T C21618T A23403G G23587T C23731T A24519T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484377
 2020-05-31 2020-07-08
 United Kingdom hCoV-19/England/NOTT-1123E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13389C C14408T C14605T G17721T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484668
 2020-05-31 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR3880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10448T C10798A C13862T C14408T C15371T A23403G G23593T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488877
 2020-05-31 2020-07-14
 United Kingdom hCoV-19/England/BRIS-12DCCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T G11083T C14408T A15283G G16861T C20844T A23403G G25563T C25688T T27539C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491224
 2020-05-31 2020-07-16
 Portugal hCoV-19/Portugal/IGC4024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492010
 2020-05-31 2020-07-18
 Oman hCoV-19/Oman/205040055/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G9652T G10265A C14408T C16293T A17008G A23403G G28044T GGG28881AAC TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_492011
 2020-05-31 2020-07-18
 Oman hCoV-19/Oman/205040106/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G1944A C3037T C10228T G10265A G11083T G14202T C14408T C16293T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_492012
 2020-05-31 2020-07-18
 Oman hCoV-19/Oman/205040194/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T G10265A C14408T C16293T C20132T A23403G C25452T GGG28881AAC GGAG29861- GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_493461
 2020-05-31 2020-07-21
 United Kingdom hCoV-19/England/NORT-285CD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493493
 2020-05-31 2020-07-21
 United Kingdom hCoV-19/England/NORT-29B42A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6133G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_496110 MT834270
 2020-05-31 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1684/2020
 ATTAAAG1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496118 MT834066
 2020-05-31 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1692/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAA29892-

EPI_ISL_496119 MT834190
 2020-05-31 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1693/2020
 ATTAAAGGTTTAT1- C241T C3037T C7973T C14408T C15933T G16968T G18985T T19839C C21727T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496120 MT834224
 2020-05-31 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1694/2020
 AT1- C241T C3037T C14408T C15933T T19839C A23403G C26455T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496121
 2020-05-31 2020-07-24
 United States hCoV-19/USA/WA-S1695/2020
 AT1- C241T C900T C3037T C14408T C15933T G16968T C18747T T19839C G20991T A23403G G27506T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_496124 MT834192
 2020-05-31 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1698/2020
 A1- C241T C3037T C14408T C15933T T19839C A23403G T27384C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_496125 MT834154
 2020-05-31 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1699/2020
 AT1- C241T C3037T C6445T G10870T C14216T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496126 MT834075
 2020-05-31 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1700/2020
 ATTAAAG1- C241T C3037T C13860T C14408T C15933T G16968T C19264T T19839C A23403G G28048T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_496127 MT834265
 2020-05-31 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1701/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T T19839C A23403G T27384C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496128 MT834110
 2020-05-31 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1702/2020
 A1- C241T C3037T C14408T C15933T T19839C A23403G T27384C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496129 MT833972
 2020-05-31 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1703/2020
 A1- C241T C3037T G8075A G10996T A12199G C14408T C15933T G16968T T19839C A23403G G23873T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_496134 MT834186
 2020-05-31 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1708/2020
 ATTAAAG1- C241T C3037T T11025A C14408T T19839C A23403G A24775T C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496136 MT834162
 2020-05-31 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1710/2020
 AT1- C241T C3037T C6445T A6604G C14216T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_498783
 2020-05-31 2020-07-28
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_293/2020
 C241T C527T A1163T C1190T C3037T A4104G C14408T A23403G GGG28881AAC

EPI_ISL_498788
 2020-05-31 2020-07-28
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_315/2020
 C241T A1163T T2211C A2870G C3037T C4782T C7843T A8026G C14408T A23403G GGG28881AAC

EPI_ISL_498789
 2020-05-31 2020-07-28
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_318/2020
 C241T A1163T T2211C A2870G C3037T C4782T C7843T A8026G C14408T A23403G GGG28881AAC

EPI_ISL_498790
 2020-05-31 2020-07-28
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_322/2020
 C241T A1163T C3037T C14408T G15705T A23403G G28209T GGG28881AAC

EPI_ISL_498932 MT847227
 2020-05-31 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_319/2020
 C241T A1163T C3037T C14408T G23120T A23403G C24157T G24812T G27987T GGG28881AAC

EPI_ISL_498933 MT847228
 2020-05-31 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_321/2020
 C241T A1163T C3037T C3961T C5547T C14178T C14408T G22199T A23403G G26109T A26117C GGG28881AAC

EPI_ISL_501087
 2020-05-31 2020-07-30
 United States hCoV-19/USA/WA-UW-10212/2020
 ATTAAAGGTT1- TCCC18GGGA C241T T2454C C3037T T8883C TT8885AA AGG13512TTR TA14222GC C14408T C15933T G16968T G19009T T19839C A21137G A23403G G26065A C27263T GGG28881AAC C29784T G29864A TG29867AA C29870A

EPI_ISL_504180 MT847212
 2020-05-31 2020-08-01
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_317/2020
 C241T C676T A1163T C3037T T7540C C14408T G16647T A23403G T23596G G27214T C27503T GGG28881AAC

EPI_ISL_504181 MT847211
 2020-05-31 2020-08-01
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_320/2020
 C241T A264T A1163T C3037T C6740T A10323G C14408T C16049T G20238T C21998T A23403G G24812T C25904T G26211T GGG28881AAC

EPI_ISL_507782
 2020-05-31 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC20996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T T2698C C3037T C13965Y C14408T C16376T A23403G C25156T C25916Y C29530A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_512432
 2020-05-31 2020-08-11
 United Kingdom hCoV-19/England/PORT-2F5DD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T484C C1059T C3037T A14199T C14408T A23403G G23593T T24529C G25217T G25563T C29119T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_513768 MW035935
 2020-05-31 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2220/2020
 C241T C1059T C3037T G4105A C4878T C5986T G10759T C14408T C16762T G18803T A23403G G25563T C29296Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513769 MW035919
 2020-05-31 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4105A C4878T G10759T C14408T C16762T G18803T A23403G G25563T C29296T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_513770 MW035949
 2020-05-31 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2222/2020
 AT1- C241T C1059T C3037T G4105A C4878T G10759T CT14408TY C16762T G18803T A23403G G25563T C29296T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513771 MW035933
 2020-05-31 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2223/2020
 AT1- C241T C1059T C3037T G4105A C4878T G10759T C14408T C16762T G18803T A23403G A24478T G25563T C29296T

EPI_ISL_513772 MW035959
 2020-05-31 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2224/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T G4105A C4878T G10759T C14408T C16762T G18803T A23403G G25563T C29296T

EPI_ISL_514770
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2367/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C15842T C16650T T18408C A20675T A23403G G25563T C25571T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_514773
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2370/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAA29891-

EPI_ISL_514774
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2371/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514775
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G21468T A23403G G25563T G29179T G29779T

EPI_ISL_514776
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C11916T C14408T C15738T C16650T A20675T G21468T A23403G G25563T G27703T G29179T G29779T

EPI_ISL_514777
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G21468T A23403G G25563T G27703T G29179T G29779T

EPI_ISL_514778
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G21468T A23403G G25563T G27703T G29179T G29779T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514779
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514780
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2377/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_514781
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G21468T A23403G G25563T G27703T G29179T G29779T

EPI_ISL_514782
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2379/2020
 AT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_514783
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G21468T A23403G G25563T G27703T G29179T G29779T

EPI_ISL_514784
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G21468T A23403G G25563T G27703T G28857T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_514785
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G21468T A23403G G25563T G27703T G29179T G29779T

EPI_ISL_514786
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2383/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G21468T A23403G G25563T G27703T G29179T G29779T AAAAA29899-

EPI_ISL_514787
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2384/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514788
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2385/2020
 C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G27703K G29179T G29779T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_514791
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2388/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_514792
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2389/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_514793
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514805
 2020-05-31 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C11916T C14408T C15842T C16650T T18408C A20675T A23403G G25563T C25571T G29179T G29779T

EPI_ISL_523383
 2020-05-31 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C1059T C3037T C14408T G19542T C19718T C21575T A23403G G25471C G25563T T25953C T27815C G29706A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524830
 2020-05-31 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2527T C3037T C4780T C7428T C14408T A20268G C20719T G22813A A23403G C26527T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525177
 2020-05-31 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T G4300T G5739A C8139T C14408T A23403G G25563T A25864G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525180
 2020-05-31 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T G6443A C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526275
 2020-05-31 2020-09-01
 Canada hCoV-19/Canada/ON-UHTC_0139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2399T C3037T C3768T G10324T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530113
 2020-05-31 2020-09-10
 Spain hCoV-19/Spain/MD-R68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17126C A20268G A23403G A24780G G28881A ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_537563
 2020-05-31 2020-09-16
 United States hCoV-19/USA/CA-UCLA-30/2020
 A1- G213T C241T C1059T C3037T A5560G C5884T G6653A G10121A C14408T A23403G G24410A G25563T G28975T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_540438 MW023394
 2020-05-31 2020-09-21
 United States SARS-CoV-2/human/USA/WI-CDC-8101/2020
 C241T A696C C3037T G3871T T3931C C14408T G21438K A23403G C23525T G27827T C28977T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_543908
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-2979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C11575T C14408T A18468C A20262G G21305A A23403G G25563T C27964T C28868T G29764A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543914
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-2987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T G7798T T11134C C14408T A18535G C19011T T23245G A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543915
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-2991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G2407T C3037T C12756T G14335T C14408T A23403G G24193T T27984C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543917
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-2993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543919
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-2995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4931A C8240T C14408T C21034T C23191T A23403G G23873T T25547A G25563T C26895T G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543920
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-2996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A7863G C10319T C14408T A23403G G25563T G25641T C27964T C28849T C28868T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543923
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-3001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3671A C8099T C9967T C14408T C17004T C21846T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543925
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-3003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C3540T C14408T G16336A G20274T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543950
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-3038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24197T GGG28881AAC G29224T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543952
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-3040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C10755T C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543974
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-3070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G2407T C3037T C12756T G14335T C14408T A23403G G24193T T27984C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545241
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-2319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545307
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-2434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4404A C11916T C14408T A23403G G25249C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545311
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-2444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T T11134C C14408T C19011T T21861C A23403G G25819A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545346
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-2509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7124T C10319T C14408T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545347
 2020-05-31 2020-09-24
 United States hCoV-19/USA/TX-HMH-2510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10448T G12989A C14408T A23403G C25339T G25563T G26690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554242
 2020-05-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-958DCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C583T G1274A C1348T C3037T C4002T G10097A C13536T C14408T A15911G C21588Y A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559708
 2020-05-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-45C21A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6636T C14120T C14408T A23403G G24197T GGG28881AAC C29011A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560554
 2020-05-31 2020-09-29
 United States hCoV-19/USA/AK-PHL383/2020
 ATT1- C241T C2143T C3037T C14408T A20268G A23403G C29119T C29370G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

MT607253
 2020-05-31 2020-06-13
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_062/2020
 C241T A1163T C3037T A4503T C4540T G5194T C14408T A23403G GGG28881AAC

MT856456
 2020-05-31 2020-08-07
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_315/2020
 C241T A1163T T2211C A2870G C3037T C4782T C7843T A8026G C14408T A23403G GGG28881AAC

MT856457
 2020-05-31 2020-08-07
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_318/2020
 C241T A1163T T2211C A2870G C3037T C4782T C7843T A8026G C14408T A23403G GGG28881AAC

MT856458
 2020-05-31 2020-08-07
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_323/2020
 C241T A916G A1163T G1730A C3037T C14408T A23403G GGG28881AAC C29733T

MT955170
 2020-05-31 2020-08-29
 Tunisia SARS-CoV-2/human/TUN/TUN_ADAGE_EZ504/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C9214T C10456T C10889T C14408T C23127T A23403G G25563T C25821T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_458292
 2020-05-xx 2020-06-03
 United States hCoV-19/USA/NC_200445/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T G21974C G23224T A23403G G25563T G26233T TA26491CT T26496C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_458293
 2020-05-xx 2020-06-03
 United States hCoV-19/USA/NC_200446/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T T12112C C14408T G21974C G23224T A23403G T24948C G25563T G26233T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_475745
 2020-05-xx 2020-06-24
 Egypt hCoV-19/Egypt/MASRI-2/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C3903T C14408T A23403G T24583C G25563T C28849T TAATAGCTTCTTAGGAG29848- GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_475746
 2020-05-xx 2020-06-24
 Egypt hCoV-19/Egypt/MASRI-3/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A361G A2010C C8782T G22468T T28144C G28237T G28878A G29742A TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840CT

EPI_ISL_475747
 2020-05-xx 2020-06-24
 Egypt hCoV-19/Egypt/MASRI-6/2020
 ATTAAAGGTTTATACCTTCCCAG1- GT24TG C241T C539T T682C C3037T C14408T C18877T A23403G G25563T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_475748
 2020-05-xx 2020-06-24
 Egypt hCoV-19/Egypt/MASRI-13/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3903T C14408T A23403G T24583C G25563T C28849T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_475749
 2020-05-xx 2020-06-24
 Egypt hCoV-19/Egypt/MASRI-14/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T G19207A A23403G A25020C G25563T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840CT

EPI_ISL_475750
 2020-05-xx 2020-06-24
 Egypt hCoV-19/Egypt/MASRI-15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C225T C241T A1313G C3037T C3373A C7768T A10323G TTGTTTCTTAGGCTATTTTTGTACTTGTTACTTTGGCCTCTTTTGTTTACTCAACCGCTACTTTAGACTGACTCTTGGTGTTTATGATTACTTAGTTTCTACACAGGAGTTTAGATATATGAATTCACAGG11614- C14408T C16568T A23403G TGCGCTTCGATTGTGTGCGTACTGCTGCAATATTGTTAACGTGAGTCT26349- G26398A C27688T GGG28881AAC C29769T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825A

EPI_ISL_475751
 2020-05-xx 2020-06-24
 Egypt hCoV-19/Egypt/MASRI-9/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C1063T C3037T C4002T T4137A G10097A C12534T C13536T C14408T A23403G G23593T C23731T T25682C C28846T GGG28881AAC G28908T G29715A TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_475752
 2020-05-xx 2020-06-24
 Egypt hCoV-19/Egypt/MASRI-10/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T T11525C C14408T C18877T A23403G G25563T T26349C A26358T G26951T C28977T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_475753
 2020-05-xx 2020-06-24
 Egypt hCoV-19/Egypt/MASRI-11/2020
 ATTAAAGGTTTATACCTTCCCAG1- GT24TG C241T C3037T C8480T C12513T C14408T C18877T C22444T C23127T A23403G G25563T C26735T G27420A C28269T C28854T A28900C TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_477039
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_00740314/2020
 C241T C1059T C3037T C14408T A23403G G25348T G25563T C29364T

EPI_ISL_477041
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_02281789/2020
 C241T C1059T C3037T C14408T A23403G G25348T G25563T C29364T

EPI_ISL_477045
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_04547356/2020
 C203T C241T C3037T C14408T G19677T A23403G C24904T GGG28881AAC

EPI_ISL_477046
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_04579295/2020
 C241T C1059T C3037T G6536A C12880T C14408T C21711T A23403G G25563T G29553A

EPI_ISL_477048
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_04677077/2020
 C241T C1059T C3037T C14408T A23403G G25348T G25563T C29364T

EPI_ISL_477049
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_04684452/2020
 C241T C245T C1059T C3037T G6536A C12880T C14408T C21711T A23403G G25563T G29553A

EPI_ISL_477050
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_04701167/2020
 C241T C1059T C3037T G6536A C12880T C14408T A23403G G25563T G29553A

EPI_ISL_477051
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_04709878/2020
 C241T C3037T A3341C G4201T C11956T C14408T C17285T A23403G C26527T

EPI_ISL_477052
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_04710049/2020
 C241T C3037T A3341C G4201T C11956T C14408T C17285T A23403G C26527T

EPI_ISL_477054
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_04806249/2020
 A187G C241T C591A C1616T C3037T C9603T C14408T G16245T C21077T A23403G A29112T

EPI_ISL_477056
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_04806819/2020
 C241T C1059T C3037T C14408T A23403G G25563T C29762T

EPI_ISL_477057
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_04865055/2020
 A187G C241T C1616T C3037T C14408T G16245T A23403G A29112T

EPI_ISL_477058
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_06074915/2020
 A187G C241T C1616T C3037T C14408T G16245T A23403G T24022C A29112T

EPI_ISL_477059
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_06514625/2020
 C241T C1059T C3037T G6536A C12880T C14408T C21711T A23403G G25563T G29553A

EPI_ISL_477060
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_07353444/2020
 C241T C1059T C3037T C14408T C17502T A23403G G25563T C29364T

EPI_ISL_477061
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_07653696/2020
 C241T C1059T C3037T C14408T A23403G G25348T G25563T

EPI_ISL_477062
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_08164457/2020
 C241T C3037T A3341C G4201T C11956T C14408T C17285T A23403G C26527T

EPI_ISL_477063
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_08312782/2020
 C241T C1059T C3037T G6536A C12880T C14408T C17977T C21711T A23403G G25563T G29553A

EPI_ISL_477065
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_08855516/2020
 C241T C3037T C14408T G19677T A23403G C24904T GGG28881AAC

EPI_ISL_477066
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_08859333/2020
 C241T C1059T C3037T G6536A C12880T C14408T A23403G G25563T G29553A

EPI_ISL_477067
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_08865483/2020
 C241T C1059T C3037T C6026T G6536A C12880T C14408T C21711T A23403G G25563T G29553A

EPI_ISL_477068
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_08984631/2020
 C241T C3037T C14408T G17122T G19677T A23403G C24904T GGG28881AAC

EPI_ISL_477069
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_08987762/2020
 C241T C3037T C14408T G19677T A23403G C24904T GGG28881AAC

EPI_ISL_477070
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_09273580/2020
 A187G C241T C1616T G2639A C3037T C14119G C14408T A23403G C29732T

EPI_ISL_477071
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_09625012/2020
 A187G C241T C1150T C1616T C3037T C10341T A13928G C14408T A23403G

EPI_ISL_477072
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_09819716/2020
 C241T C1059T C3037T G6536A C12880T C14408T C21711T A23403G G25563T G29553A

EPI_ISL_477073
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_09963377/2020
 C241T C3037T C14408T G19677T A23403G C24904T GGG28881AAC

EPI_ISL_477074
 2020-05-xx 2020-06-28
 Canada hCoV-19/Canada/BC_09965869/2020
 C241T C3037T C14408T G19677T A23403G C24904T GGG28881AAC

EPI_ISL_486897 LC567845
 2020-05-xx 2020-07-09
 Japan TKYE615419_2020
 ATTAAAGGTTTA1- C241T C313T C3037T C14408T A23403G T26966A GGG28881AAC

EPI_ISL_486898 LC567846
 2020-05-xx 2020-07-09
 Japan TKYE615484_2020
 ATTA1- C241T C3037T T3136C C6336T C14074A C14408T A23403G GGG28881AAC

EPI_ISL_486899 LC567847
 2020-05-xx 2020-07-09
 Japan TKYE615664_2020
 ATTAAAGGTTT1- C241T C313T C3037T G4006T C6633T C14408T A23403G G25218T G25855T GGG28881AAC G28975T

EPI_ISL_486900 LC567848
 2020-05-xx 2020-07-09
 Japan TKYE615667_2020
 ATTAAAGGTTT1- C241T C313T C3037T G4006T C6633T C14408T A23403G G25218T G25855T GGG28881AAC G28975T

EPI_ISL_486901 LC567849
 2020-05-xx 2020-07-09
 Japan TKYE614866_2020
 ATTAAAGGTTT1- C241T C313T C3037T G4006T C6633T C14408T A23403G G25218T G25855T GGG28881AAC G28975T

EPI_ISL_486902 LC567850
 2020-05-xx 2020-07-09
 Japan TKYE615178_2020
 ATTAAAGGTTTA1- C241T C3037T T3136C C6336T C14074A C14408T A23403G GGG28881AAC

EPI_ISL_486903 LC567851
 2020-05-xx 2020-07-09
 Japan TKYE614327_2020
 ATTA1- C241T C313T C3037T G4006T C6633T C14408T A23403G G25218T C25498T G25855T GGG28881AAC G28975T

EPI_ISL_486904 LC567852
 2020-05-xx 2020-07-09
 Japan TKYE614862_2020
 ATTAAAGGTTTA1- C241T C313T C3037T C14408T A23403G G25177T GGG28881AAC G28975T

EPI_ISL_486905 LC567853
 2020-05-xx 2020-07-09
 Japan TKYE615220_2020
 ATTAAAGGTTTA1- C241T C313T C3037T C3990T G11801A A12571G A14348G C14408T C15848T T15939C A23403G G26730A GGG28881AAC

EPI_ISL_486906 LC567854
 2020-05-xx 2020-07-09
 Japan TKYE615221_2020
 ATTAAAGGTTTA1- C241T C313T C3037T C3990T G11801A A12571G A14348G C14408T C15848T T15939C A23403G G26730A GGG28881AAC G29751C

EPI_ISL_486907 LC567855
 2020-05-xx 2020-07-09
 Japan TKYE614903_2020
 ATTA1- C241T C3037T T3136C C6336T C14074A C14408T A23403G GGG28881AAC

EPI_ISL_486908 LC567856
 2020-05-xx 2020-07-09
 Japan TKYE615406_2020
 ATTAAAGGTT1- C241T C313T T1965C C3037T C13356T C14408T C22482T C23077T A23403G GGG28881AAC

EPI_ISL_486909 LC567857
 2020-05-xx 2020-07-09
 Japan TKY17873_2020
 ATTAAAGGTTTATACC1- C241T C313T C3037T T4346C C9286T C10376T C14408T C14708T A23403G C28725T GGG28881AAC G29692T

EPI_ISL_486910 LC567858
 2020-05-xx 2020-07-09
 Japan TKY17904_2020
 ATTAAAGGTTTATAC1- C241T C313T C3037T C12778T C14408T A23403G G26840A GGG28881AAC G28975T

EPI_ISL_486911 LC567859
 2020-05-xx 2020-07-09
 Japan TKY17926_2020
 ATTAAAGGTTTATACCTT1- C241T C313T C3037T C12778T C14408T A23403G G26840A GGG28881AAC G28975T

EPI_ISL_507205
 2020-05-xx 2020-08-03
 Russia hCoV-19/Russia/Bryansk-RII24784S/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T G15372T C17850T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507216
 2020-05-xx 2020-08-03
 Russia hCoV-19/Russia/Novy_Urengoy-RII24772S/2020
 C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507217
 2020-05-xx 2020-08-03
 Russia hCoV-19/Russia/Novy_Urengoy-RII24774S/2020
 ATTAAAGGT1- C241T C3373A C14408T C15960T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_507218
 2020-05-xx 2020-08-03
 Russia hCoV-19/Russia/Novy_Urengoy-RII24775S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A G14209T C14408T C15960T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507219
 2020-05-xx 2020-08-03
 Russia hCoV-19/Russia/Novy_Urengoy-RII24776S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A C14408T C15960T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507220
 2020-05-xx 2020-08-03
 Russia hCoV-19/Russia/Novy_Urengoy-RII24781S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T G17847A T19839C A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507221
 2020-05-xx 2020-08-03
 Russia hCoV-19/Russia/Novy_Urengoy-RII24783S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507222
 2020-05-xx 2020-08-03
 Russia hCoV-19/Russia/Novy_Urengoy-RII24786S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A C14408T C15960T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507223
 2020-05-xx 2020-08-03
 Russia hCoV-19/Russia/Novy_Urengoy-RII24787S/2020
 C241T C3037T C3373A C14408T A23403G G27361T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507300
 2020-05-xx 2020-08-03
 Russia hCoV-19/Russia/Yaroslavl-RII24773S/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T G910T C3037T C14408T A23403G C25658T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_517613
 2020-05-xx 2020-08-24
 Suriname hCoV-19/Suriname/SR-02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T T3034A C3037T C14408T C15324T C16193T C18060T A22404T C22450T A23403G C28253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517615
 2020-05-xx 2020-08-24
 Suriname hCoV-19/Suriname/SR-04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T T3034A C3037T C14408T C15324T C16193T C18060T A22404T C22450T A23403G C28253T C29738T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

LC572068
 2020-05-xx 2020-07-29
 Japan TKYE614865_2020
 ATTA1- C241T C313T C3037T G4006T C6633T C14408T A23403G G25218T G25855T GGG28881AAC G28975T

LC572069
 2020-05-xx 2020-07-29
 Japan TKYE614992_2020
 ATTAAAGGTTTA1- C241T C313T C3037T A7698G C14408T G18756T A23403G C24106T GGG28881AAC G28975T

LC572070
 2020-05-xx 2020-07-29
 Japan TKYE615177_2020
 ATTAAAGGTTTAT1- C241T C3037T T3136C G4126A C6336T C14074A C14408T A23403G GGG28881AAC

MT951924
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C2113T C3037T T5941C C7765T C14408T C17690T C18877T A22438T A23403G G25563T T27672C

MT951925
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2113T C3037T T5941C C7765T C10969T C14408T C17690T C18877T A22438T A23403G G25563T T27672C C28603T G29862S C29870M

MT951926
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C21057T A23403G G25563T C29870A

MT951927
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0470/2020
 ATTAAAGGT1- C241T C1059T C3037T C14408T C21057T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT951929
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0472/2020
 A1- C241T C1059T C3037T C14408T C21057T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT951930
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C4795T C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT951931
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T9172C C9967T A10948G C14408T A23403G G23608T C25452T G26730T GGG28881AAC C29870A

MT951932
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0477/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT951936
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0481/2020
 ATTA1- C241T C799T C1059T C3037T C6701T C11916T C13252T C14408T A23403G C23604T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

MT951938
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0484/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C9165T G11083T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

MT951939
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0485/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G6894T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

MT951940
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0486/2020
 ATTAA1- A12T C241T C1059T C3037T C14408T C21057T A23403G G25563T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

MT951941
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0487/2020
 A1- C241T C1059T C3037T C14408T A23403G G25563T C29870A

MT951942
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0488/2020
 ATTAAAGG1- C241T C3037T T4389G T10264C C14408T C18877T G18985T G22770A A23403G G25459T G25555T G25563T G28086T G29384T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT952612
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C14925T A23403G G25563T C29870A

MT952673
 2020-05-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G15760A C18171A G22899T A23403G G25563T C28887T C29870A

EPI_ISL_461963
 2020-06-01 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111B37/2020
 C241T G1874T C3037T C8683T G11083T C14408T G21624T A22969G A23403G G25297T C28093T GGG28881AAC TA29789-

EPI_ISL_464160
 2020-06-01 2020-06-11
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_084/2020
 C241T C3037T C14408T C17135T A23403G G28089T GGG28881AAC

EPI_ISL_464161
 2020-06-01 2020-06-11
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_083/2020
 C241T A1163T C3037T A10323G C10833T C14408T G19648T A23403G C25626T C26600T T26663C G28774T GGG28881AAC G29587T

EPI_ISL_464162
 2020-06-01 2020-06-11
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_080/2020
 C241T C3037T G11719A C14408T A23403G GGG28881AAC

EPI_ISL_466627 MT601276
 2020-06-01 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_52/2020
 C241T T2950A C3037T C5203T C10252T C14408T A23403G T27233C GGG28881AAC

EPI_ISL_466628 MT601277
 2020-06-01 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_54/2020
 C241T A1163T C3037T C3961T C14408T A18735G A23403G C26527T GGG28881AAC

EPI_ISL_466644 MT601288
 2020-06-01 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_76/2020
 C241T A1163T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_466645 MT601289
 2020-06-01 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_77/2020
 C241T G885T A1163T C3037T C8281T C14408T A23403G C25688T GGG28881AAC

EPI_ISL_466649 MT601292
 2020-06-01 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_82/2020
 C241T A1163T C3037T C5339T C14408T C21707T C21789T A23403G T28208C GGG28881AAC AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_466650 MT601293
 2020-06-01 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_85/2020
 C241T A1163T C3037T C8146T C14408T C17518T A23403G G24872T C26058T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_466688 MT601294
 2020-06-01 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_86/2020
 C241T C1288T C2048T C3037T C13255T C14408T A22193T A23403G C26228T GGG28881AAC

EPI_ISL_466689 MT601285
 2020-06-01 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_73/2020
 C241T A1163T C3037T C14408T A23403G G28690A GGG28881AAC G28960T

EPI_ISL_466690 MT601286
 2020-06-01 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_74/2020
 C241T A1163T C3037T C14408T A23403G G28690A GGG28881AAC G28960T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_466691 MT601287
 2020-06-01 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_75/2020
 C241T A1163T C3037T C14408T A23403G G28690A GGG28881AAC G28960T

EPI_ISL_466693 MT601290
 2020-06-01 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_78/2020
 T43C C241T C1480T C3037T G14400T C14408T A23403G G25598T G28812C GGG28881AAC C29118T

EPI_ISL_466694 MT601291
 2020-06-01 2020-06-11
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_81/2020
 C241T A1163T C3037T C4058T G9761T A11780G C14322T C14408T C15960T C16708T G21974C A23403G GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_467502
 2020-06-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G C23625T G27147T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467503
 2020-06-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0153/2020
 AT1- C241T C2110T C3037T C14408T A23403G C23625T G27147T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_467506
 2020-06-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0156/2020
 C241T C3037T C14408T A23403G C23625T G27147T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_467509
 2020-06-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0159/2020
 ATTA1- C241T C3037T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467511
 2020-06-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0161/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C16376T A23403G C24034T G28628T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467512
 2020-06-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0162/2020
 ATTAAAGGT1- C241T C3037T C14408T C16376T A23403G C24034T G28628T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_467513
 2020-06-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0163/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C16376T A23403G C24034T G28628T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_467514
 2020-06-01 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C16376T A23403G C24034T G28628T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471157
 2020-06-01 2020-06-19
 United States hCoV-19/USA/WI-GMF-M00007/2020
 C241T C715T C1059T G2036T C3037T A7210W C11916T C14408T G23311T A23403G A23586G G25563T C28256T

EPI_ISL_471416
 2020-06-01 2020-06-21
 Romania hCoV-19/Romania/Buzau-291946/2020
 C241T C3037T G4124T C10537T C14120T C14408T A15165G A15477G T16456C A23403G GGG28881AAC

EPI_ISL_471629
 2020-06-01 2020-06-22
 India hCoV-19/India/CCMB_L1738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G4354A C6573T C14408T A23403G A25381C C25528T G25595T C28087T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471630
 2020-06-01 2020-06-22
 India hCoV-19/India/CCMB_L1743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C5700A G8131T C9693T C10228T C10815T C14408T C15180A C16626T A23403G G26951C GGG28881AAC G29474T C29635T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471631
 2020-06-01 2020-06-22
 India hCoV-19/India/CCMB_L1746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G4354A C6573T C14408T A23403G A25381C C25528T C26256T C28087T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_472021
 2020-06-01 2020-06-23
 United Kingdom hCoV-19/England/LIVE-9F8A4/2020
 C241T C3037T C14408T A23403G C26606T C28290T

EPI_ISL_473079
 2020-06-01 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1624D2/2020
 C241T C3037T C4455Y T8944C C14408T C14741T G22484T A23403G G27382T A28294C

EPI_ISL_473459
 2020-06-01 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B4125/2020
 C241T C1191T C3037T C14408T C16173T C19140T C19374T A23403G A28211G GGG28881AAC

EPI_ISL_473466
 2020-06-01 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B42C8/2020
 C241T C3037T C4012T C14408T C14676T C19140T C19374T A23403G GGG28881AAC C29200T

EPI_ISL_473936
 2020-06-01 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6324/2020
 C241T C3037T C6472T C7815T C14408T A20268G G22363T A23403G T23406C T26972C

EPI_ISL_473938
 2020-06-01 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6328/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G

EPI_ISL_475082
 2020-06-01 2020-06-23
 Belgium hCoV-19/Belgium/UGent-122/2020
 C241T C3037T G7675A G12661A C14408T C15324T A23403G A25235G

EPI_ISL_475434
 2020-06-01 2020-06-23
 United Kingdom hCoV-19/England/SHEF-CB0D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21614T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_475568
 2020-06-01 2020-06-23
 Sweden hCoV-19/Sweden/20-51816/2020
 C241T C751T C3037T G8457T A9645T C14408T G16377T G16416T A23403G C26447T C27710T GGG28881AAC C28887T

EPI_ISL_476762
 2020-06-01 2020-06-25
 United States hCoV-19/USA/MN-MDH-1177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1812T C3037T G5617T C6026T C10319T T11098C C13665T C14408T A23403G G25563T C27964T C28531T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_477208
 2020-06-01 2020-06-29
 India hCoV-19/India/InStem_NCBS_0005/2020
 A1T A4C -8CAGAAGACGGCATACGAGATAATGAGCGGTGACTGGA T11C T13G -16GTGTGCT C21G GG23TC A4774G C6312A G11083T G11944T C13730T C21855T C23929T G26262T C28311T A29684G G29864C ATG29866CAA A29874T

EPI_ISL_477309
 2020-06-01 2020-06-29
 United States hCoV-19/USA/MN-MDH-1220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C11750T C14408T C15324T C16260T C21575T A23403G G25563T C28821A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_477742
 2020-06-01 2020-06-30
 United Kingdom hCoV-19/England/BIRM-606A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2299T C3037T G3955T TCAAATTCG6329- C14408T A23403G T25663C C26936T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478108
 2020-06-01 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C125T C241T G487A C3037T C3411T C3885T C14408T G17058T C17104T A20268G A23403G C28354T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478154
 2020-06-01 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C292T C3037T C9808T C10798A C13862T C14408T C21575T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478311
 2020-06-01 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D68F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A6375G A10948G C14408T C21736T A23403G G24926T C25665T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478312
 2020-06-01 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D692C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25217T C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479355
 2020-06-01 2020-06-30
 United Kingdom hCoV-19/Wales/PHWC-164BAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C3551T A5524R T5573C C6380T C7420T C10401T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_479550
 2020-06-01 2020-06-30
 India hCoV-19/India/NIV-46317/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- G204T C241T C313T C3037T A3063G C5700A G11417T C11767T C14408T C21036T A23403G C24130T C26607T GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480654 MT745639
 2020-06-01 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2012/2020
 ATTAAAGGTTTATAC1- C71M C241T C3037T C4002T G10097A T12486C C13536T C14408T C21952T C22480T A23403G C23731T C25624T GGG28881AAC G29543T T29726- TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_481768
 2020-06-01 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DB1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G10097A C12546T C14408T C19524T A23403G C23731T G28580T A28870T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481996
 2020-06-01 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DDD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7067S A7766G G7873T C9365T G10097A C14408T C19524T C20032T C21057T A23403G G23587T C23731T C27649Y G28580T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_481998
 2020-06-01 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DE20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11164G C14408T G15406T G21538T G22332A A23403G G25429T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_482026
 2020-06-01 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DDC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T C9365T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484860 MT750069
 2020-06-01 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4467T C7843T C14408T C18086T C19164T T20967C A23403G G25699T G25784T C26753T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484876
 2020-06-01 2020-07-08
 United States hCoV-19/USA/WI-UW-501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4504T C12025T C14408T T19839C A23403G C23707T G28027A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484880 MT750087
 2020-06-01 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4467T C7843T C14408T C18086T C19164T T20967C A23403G G25699T G25784T C26753T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484881 MT750088
 2020-06-01 2020-07-08
 United States SARS-CoV-2/human/USA/IL-UW-506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1722T C3037T C3602T C7119T C14408T A23403G G25563T T27502A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485399 MT734046
 2020-06-01 2020-07-09
 Poland SARS-CoV-2/human/POL/IHG_PAS_4_67/2020
 G219T C241T C3037T T5632C C9430T C10605T C14408T C20436T A23403G G25687T GGG28881AAC C29218T C29769T AAA29901-

EPI_ISL_485400 MT734055
 2020-06-01 2020-07-09
 Poland SARS-CoV-2/human/POL/IHG_PAS_4_273/2020
 C241T C337T C3037T C7224T C14408T C19662T C19901Y A23403G G28085T GGG28881AAC AAA29901-

EPI_ISL_491225
 2020-06-01 2020-07-16
 Portugal hCoV-19/Portugal/IGC4033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7119T C14408T A23403G G25677T A26019C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491226
 2020-06-01 2020-07-16
 Portugal hCoV-19/Portugal/IGC4089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C18747T A23403G G24368T G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491227
 2020-06-01 2020-07-16
 Portugal hCoV-19/Portugal/IGC4092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14235T C14408T G20709T A23403G G28371T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491230
 2020-06-01 2020-07-16
 Portugal hCoV-19/Portugal/IGC4102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T G11083T C14408T G22021T A23403G G25563T G26828T G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491231
 2020-06-01 2020-07-16
 Portugal hCoV-19/Portugal/IGC4103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492036
 2020-06-01 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_9331/2020
 AT1- T3C A6G -10G TACCTTCCCAGGT13- C241T C1471T C3037T C12053T C14408T C18175T A23403G G25088T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860CC

EPI_ISL_492048
 2020-06-01 2020-07-18
 Brazil hCoV-19/Brazil/UFRJ-IBEX_58271/2020
 ATTAAAGGTTTATACCTTCC1- G23A C241T C3037T C14408T A23403G G25793T T27299C GGG28881AAC T29148C G29861C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_496130 MT834316
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1704/2020
 ATTAAAGGTTTAT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496132 MT834295
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1706/2020
 ATTAAAGGTTT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496133 MT834260
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1707/2020
 AT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_496135 MT833988
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1709/2020
 AT1- C241T A2127G C3037T C3397T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496137
 2020-06-01 2020-07-24
 United States hCoV-19/USA/WA-S1711/2020
 ATTAAA1- C241T C1059T C3037T A4166G C11195T C14408T A23403G G25563T C26645T C27945T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496138 MT834132
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1712/2020
 ATTAAAGGTTT1- C241T C3037T G4510T C14408T C15933T T19839C T22690C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496139 MT834197
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1713/2020
 ATTAAAGGTTT1- C241T C3037T G4510T C14408T C15933T T19839C T22690C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496140 MT834107
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1714/2020
 AT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496141 MT834010
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1715/2020
 A1- C241T C3037T C14408T C15933T G16377T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496142 MT833994
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1716/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C C20320T A21215G A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_496143 MT834234
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1717/2020
 ATTAAAG1- C241T C3037T A4197G C14408T G16813A A23403G G24368C T25783C GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_496144 MT834036
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1718/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496145 MT834089
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1719/2020
 ATTAAAGGTTTAT1- C241T C1060T C3037T C14408T T19839C A21845G A23403G C25614T A28100G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496146 MT834065
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1720/2020
 A1- C241T C3037T C6573T C14408T C16877T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_496147 MT834068
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1721/2020
 AT1- C241T C3037T C14408T C15240T C15933T G16968T T19839C A23403G C26607T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_496148 MT834078
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1722/2020
 ATT1- C241T C1060T C3037T C14408T T19839C A23403G G23624T C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496150 MT834208
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1724/2020
 ATTAAAGGTTTAT1- C241T C3037T A12410G G12832T C14408T G19101T G19384A T19632A T19839C G21800T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496151 MT834027
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1725/2020
 ATTAAAGGTTTAT1- C241T C3037T C3992T G4510T C14408T C15933T T19839C A23403G T25451C G25647T C26895T GGG28881AAC C29200T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496153 MT834178
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1727/2020
 ATTAAAGGTTT1- C241T C3037T C3992T G4510T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496154 MT834271
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1728/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C A23403G G26690T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496155 MT834251
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1729/2020
 ATTAAAGGTT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496156 MT834245
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1730/2020
 ATTAAAGGTTT1- C241T C3037T C3992T G4510T C14408T C15933T T19839C A23403G T25451C GGG28881AAC G29000T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496157 MT834044
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1731/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C14599T C15352T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496158 MT834292
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1732/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496159 MT834238
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1733/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C15933T G16968T G18394T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496160 MT834009
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1734/2020
 AT1- C241T C3037T C10138T C14408T C15933T G16968T T19839C A21717T A23403G GGG28881AAC C29719T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_496161 MT834031
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1735/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A21868G A23403G GGG28881AAC C29274T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496163 MT834228
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1737/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A21215G A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_496174 MT833991
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1748/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C25710T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_496175 MT834141
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1749/2020
 ATTAAAGGTTTAT1- C241T C3037T C6445T C14216T C14408T G16813A A23403G C23604T GGG28881AAC G29254T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496176 MT834212
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1750/2020
 ATTAAAG1- C241T C3037T G8889A C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496178 MT834274
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1752/2020
 AT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_496179 MT834116
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1753/2020
 AT1- C241T C3037T C14408T C15933T G16968T G18394T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496180 MT834139
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1754/2020
 ATTAAAGGTT1- C241T C3037T C14408T C15933T G16968T T19839C G22343C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_496182 MT834255
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1756/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496183 MT834103
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1757/2020
 AT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C A23403G C23757T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_496184 MT834214
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1758/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T C16954T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496186 MT834090
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1760/2020
 AT1- C241T C3037T A4197G C14408T G16813A G23349T A23403G G24368C T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_496188 MT834013
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1762/2020
 AT1- C241T C3037T G4510T C14408T C15933T G16207A T19839C T22690C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496190 MT834291
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1764/2020
 AT1- C241T C3037T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496191 MT834022
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1765/2020
 AT1- C241T G2144T C3037T C3768T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496192 MT834207
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1766/2020
 ATT1- C241T C1800T C3037T C14408T C15933T G16968T T19839C A23403G C28725T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496193 MT834231
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1767/2020
 AT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496194 MT834064
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1768/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496195 MT834084
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1769/2020
 ATTAAAGGTT1- C241T C3037T C10138T C14408T C15933T G16968T T19839C A21717T A23403G GGG28881AAC C29719T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496196 MT834159
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1770/2020
 ATTAAAGGTT1- C241T C3037T C14408T C15933T G16968T T19839C A21717T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_496197 MT834188
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1771/2020
 ATTAAAG1- C241T C3037T T5335C C6445T G14186A C14408T G16813A G16852T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_496199 MT834071
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1773/2020
 ATTAAAGGTTTAT1- C241T C3037T C11224T C14408T C15933T G16968T T19839C A23403G C26607T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496200 MT834230
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1774/2020
 AT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496202 MT834037
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1776/2020
 AT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C A23403G C23757T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_496204 MT834278
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1778/2020
 AT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496205 MT834348
 2020-06-01 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1779/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3037T C14408T C18086T T19839C A23403G C28629T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508156
 2020-06-01 2020-08-04
 India hCoV-19/India/AR1/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C3634T C14408T C15324T A15486G G23222C A23403G G29868A

EPI_ISL_508174
 2020-06-01 2020-08-04
 India hCoV-19/India/AR27/2020
 ATTA1- C241T C313T G1820T C2488T C3037T C5700A C7471T GC9245TT C14408T G19006T A23403G C24023T GGG28881AAC G29868A

EPI_ISL_508177
 2020-06-01 2020-08-04
 India hCoV-19/India/AR3/2020
 ATTAAAGGTTT1- C241T A1662G T1947C C3037T C14408T G18002A C18877T C22444T A23403G G25563T C26735T C28854T G29868A

EPI_ISL_508184
 2020-06-01 2020-08-04
 India hCoV-19/India/AR4/2020
 ATTAAAGGTTT1- C241T C313T C3037T C14408T A16719G C19017T G21468T A23403G GGG28881AAC G29868A

EPI_ISL_508191
 2020-06-01 2020-08-04
 India hCoV-19/India/AR5/2020
 A5G C241T C313T C3037T C14408T A16719G A18825G C19017T G21468T A23403G A26319G GGG28881AAC G29868A

EPI_ISL_510526
 2020-06-01 2020-07-20
 Egypt hCoV-19/Egypt/Army-MCL001/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_510852
 2020-06-01 2020-08-07
 Sweden hCoV-19/Sweden/20-51844/2020
 C241T C3037T A4774G C5884T C12781T C14408T A23403G GGG28881AAC

EPI_ISL_510853
 2020-06-01 2020-08-07
 Sweden hCoV-19/Sweden/20-51847/2020
 C241T C3037T C14408T G16416T A23403G C26447T GGG28881AAC C28887T

EPI_ISL_510854
 2020-06-01 2020-08-07
 Sweden hCoV-19/Sweden/20-51848/2020
 C241T C3037T C14408T G16416T A23403G C26447T GGG28881AAC C28887T

EPI_ISL_510855
 2020-06-01 2020-08-07
 Sweden hCoV-19/Sweden/20-51849/2020
 C241T C3037T C14408T G16416T A23403G C26447T GGG28881AAC C28887T

EPI_ISL_510856
 2020-06-01 2020-08-07
 Sweden hCoV-19/Sweden/20-51852/2020
 C241T C3037T C14408T G16416T A23403G A24021G C26447T GGG28881AAC C28887T

EPI_ISL_510857
 2020-06-01 2020-08-07
 Sweden hCoV-19/Sweden/20-51853/2020
 C241T C3037T C14408T G16416T T20928C T20955C A23403G C26447T G28141T GGG28881AAC C28887T

EPI_ISL_510858
 2020-06-01 2020-08-07
 Sweden hCoV-19/Sweden/20-51854/2020
 C241T C2933T C3037T T6334C T8063G C10818T C14408T G22992A A23403G C24912T G26158T T26966C

EPI_ISL_514789
 2020-06-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2386/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G22272A A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514794
 2020-06-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2391/2020
 A1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514796
 2020-06-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2393/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C3885T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514797
 2020-06-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2394/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514798
 2020-06-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2395/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514799
 2020-06-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2396/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_514800
 2020-06-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2397/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_514801
 2020-06-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2398/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G21468T A23403G G25563T G27703T G29179T G29779T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_514803
 2020-06-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2400/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_514806
 2020-06-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2403/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516884
 2020-06-01 2020-08-24
 Israel hCoV-19/Israel/CVL-n17051/2020
 C241T C683T C1059T C3037T T3547C C5144T C6402T G8572T G11083T C14408T G17427T A23403G G24386A G25563T G25690T

EPI_ISL_516885
 2020-06-01 2020-08-24
 Israel hCoV-19/Israel/CVL-n17054/2020
 C241T C683T C1059T C3037T T3547C C5144T C6402T G8572T G11083T C14408T G17427T A23403G G24386A G25563T G25690T

EPI_ISL_516886
 2020-06-01 2020-08-24
 Israel hCoV-19/Israel/CVL-n17112/2020
 C241T C683T C1059T C1913T C3037T C5144T C6402T G8572T G11083T C14408T G17427T G21606T A23403G G25563T G25690T

EPI_ISL_522397 MT946885
 2020-06-01 2020-08-25
 United States SARS-CoV-2/human/USA/AK-PHL403/2020
 ATTAAAGGTTT1- C241T C2143T C3037T C14408T A20268G A23403G G26062T C29119T C29370G A29871T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_523113
 2020-06-01 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-8-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G C7051T G11083T G14274A C14408T A23403G A24862G T26047G C27527T T29765C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523114
 2020-06-01 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-8-14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G C7051T G14274A C14408T A23403G A24862G T26047G T29765C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523115
 2020-06-01 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-8-16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G C7051T G14274A C14408T TTTGGGTGTTTA21982- A23064C A23403G A24862G T26047G T29765C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523116
 2020-06-01 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-8-20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C2488T C17410T C23422T A25937T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523117
 2020-06-01 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-8-8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G G14274A C14408T G17193A A23403G A24862G T26047G G29779T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523118
 2020-06-01 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-8-9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G G14274A C14408T A23403G A24862G T26047G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523134
 2020-06-01 2020-08-26
 Netherlands hCoV-19/Netherlands/FL-EMC-25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G G25500T GGG28881AAC G29688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523139
 2020-06-01 2020-08-26
 Netherlands hCoV-19/Netherlands/FR-EMC-47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T24214C G25244C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523509
 2020-06-01 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T C16466A G19388A A23403G C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523551
 2020-06-01 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2885A C3037T C14408T G20275A A23403G G25055T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_523552
 2020-06-01 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2885A C3037T C14408T G20275A A23403G G25055T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_524022
 2020-06-01 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-18966V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C13115T C14408T A17730G A19409G A23403G GGG28881AAC GAC29868-

EPI_ISL_524023
 2020-06-01 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-19109V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C14408T A23403G G28643A GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524802
 2020-06-01 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C11379T C14408T C17125T T19839C C20402T A22320G A23403G G25523T G25563T C27964T G29395T T29685G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524808
 2020-06-01 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T A3121C G9705T C14408T G23009T A23403G G25563T G27637A C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524812
 2020-06-01 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A A22320G A23403G G25563T C26571T C27964T G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524852
 2020-06-01 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T G4300T G5739A C8139T C14408T A23403G G25563T A25864G T26259A C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524853
 2020-06-01 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C12774T C14408T A22320G G22349A A23403G G25244T G25563T C26447T C26735T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524855
 2020-06-01 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C12774T C14408T A22320G G22349A A23403G G25244T G25563T C26447T C26735T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524861
 2020-06-01 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C10789T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524864
 2020-06-01 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C10789T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524867
 2020-06-01 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C10789T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524872
 2020-06-01 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2008856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C14408T G15908A T20109C A22320G A23403G C23644T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525925
 2020-06-01 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22894T A23403G C23604T C25626T C28854T

EPI_ISL_526394
 2020-06-01 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A97AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C5339T C11750T A12180G C12559T C14408T C16733T C19488T TTA20423- A23403G GGG28881AAC

EPI_ISL_530114
 2020-06-01 2020-09-10
 Spain hCoV-19/Spain/MD-R81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10525T C14408T A17316G A20268G A23403G C25487T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_535265
 2020-06-01 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020099251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C9447T C14408T C20555T A21137G A23403G G25563T

EPI_ISL_535266
 2020-06-01 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020099255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C9447T C14408T C20555T A23403G G25563T

EPI_ISL_535268
 2020-06-01 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020099258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C9447T C14408T C20555T A23403G G25563T

EPI_ISL_539546
 2020-06-01 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2013594/2020
 C241T C3037T C3173A G11083T C13458T C14408T C20480T A23403G GGG28881AAC

EPI_ISL_543963
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-3057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5806T C14408T C20474T A23403G A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545312
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545337
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C335T C2485T C3037T C14408T C16017T A23403G C24718A T27212C G27561T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545338
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545339
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C335T C3037T C14408T C16017T A23403G C24718A T27212C G27561T C27629T A29292T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545352
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12076T C14408T A23403G G25563T C25844T G25907T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545361
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2228C C3037T C14408T C16163T G22022A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545363
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GC2305TT C3037T C7321T C14408T C19011T A23403G C26807T GGG28881AAC G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545366
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2118A C2459T C3037T C7528T C14408T A23403G G25088T G25563T C28890T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545367
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A13938G C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545371
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3122T C4795A T5755C T9172C A10948G C13965T C14408T G17302T C19662T A23403G C25904T A26612T G26730T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545373
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15438T A18818G A23403G G25494T G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545374
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T G14829T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545375
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C539T C1059T G2118A C2459T C3037T C7528T C14408T A23403G G25088T G25563T C28890T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545376
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C14408T A23403G G25088T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545377
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8078T C14408T C16260T T21942C A23403G G25563T C27297T C28821A C28957T G29405C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545381
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545384
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C539T C1059T G2118A C2459T C3037T C7528T C14408T A23403G G25088T G25563T C28890T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545392
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2786G C3037T A7444G G8017T C12741T C13730T C14408T C16111T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545399
 2020-06-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-2576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7402C G7798T T11134C C14408T A18535G C19011T A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547571
 2020-06-01 2020-09-24
 Brazil hCoV-19/Brazil/SP-341/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12049T C14408T C15237T A23403G T27299C GGG28881AAC T29148C AGGAGAA29860TTCGATC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868CT

EPI_ISL_547573
 2020-06-01 2020-09-24
 Brazil hCoV-19/Brazil/SP-342/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T1702G T1708C C3037T C5467T C12053T C14408T C17550T A23403G G25088T GGG28881AAC A29389G A29863T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_558906
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52A3E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2756G C3037T A3075R T10513C C14408T C17550T A23403G T27851C GGG28881AAC C29541T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558909
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-52C063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3431T G11083T C14408T A23403G A25575C G29315C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558924
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52A89A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204K C241T C3037T C9603T C14408T A20712G A23403G G25429T C25611T T26418C A26530G C29585T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558931
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52AF3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T A23403G C25844T A27326R C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558933
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52AB46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T T23255C A23403G A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558957
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52ADC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5926A T14331C C14408T A23403G C25350T G28487A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558958
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52C40D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T C3373A C14408T C14688T A23403G C26270T G27706T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558962
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5292F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14408T G15438T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558966
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52A6AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623C C3037T C4577T T7009A C14408T G17058T A23403G C27046T C27143T T28026C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558967
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52B88A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22201T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558969
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52B1DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T A23403G G25395K C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558971
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52B87B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T G8371T G11083T C14408T C17746T G19962T C22477T A23403G G25563T C25777T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558983
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52ABA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5926A T14331C C14408T A23403G C25350T G28487A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558986
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-529066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3338T C3511T C14408T A22301G A23403G G29508A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558989
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-528A87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T G3259T C6312A A10948G A12075G C14408T A23403G T25202K G25552T GGG28881AAC G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558999
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52B2C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7874A G10097A C14408T C21772T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559001
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5284B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14408T G15438T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559002
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52A627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T10453C C11195T C14408T A23403G G23593C C26527T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559007
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52B29B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559008
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5297AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7397C C8090T C14408T C15924T A21323G A23403G C23895T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559027
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52B125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559035
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52C230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T C3373A C9714T G9805T C14408T C14688T C16049T T23042Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559045
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52AA85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C25867T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559066
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52B996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559069
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52B90F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2044A C3037T C14408T A23403G GGG28881AAC G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559070
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52A636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2756G C3037T T10513C C14408T C17550T A23403G T27851C GGG28881AAC C29541T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559077
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5289A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9634T C14408T C18828T C19488T A19543G A23403G T25202K C28528T GGG28881AAC CGAGGCCACGCGGAGTA29733- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559078
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52AAA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T T23255C A23403G A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559312
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-4A0095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559326
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-49FE44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T T26715K G26720R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559335
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-49FFC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C14805T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559352
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-4A036F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203Y C241T C3037T C7173T G10265A C14408T A23403G C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559368
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-4A0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7173T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559566
 2020-06-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49F0B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15544T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560555
 2020-06-01 2020-09-29
 United States hCoV-19/USA/AK-PHL397/2020
 ATTAAAGGTTTATA1- C241T C2143T C3037T C14408T A20268G A23403G C29119T C29370G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_560556
 2020-06-01 2020-09-29
 United States hCoV-19/USA/AK-PHL400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C2143T C3037T C14408T A20268G A23403G T23842C C28789T C29077T C29370G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_560886
 2020-06-01 2020-09-29
 United States hCoV-19/USA/UT-UPHL-05531/2020
 ATTAAA1- C241T T833C C1059T C3037T C6541Y C11379T C14408T A22320G A23403G G25563T C27964T C29870M

EPI_ISL_566050
 2020-06-01 2020-10-01
 United Kingdom hCoV-19/England/202320700/2020
 ATTAAAGGTTTA1- C241T C313T G599A C2113Y T2153A C3037T C4084Y C14408T G15627T A23403G G26589C A27083G C27128T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MT607245
 2020-06-01 2020-06-13
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_084/2020
 C241T C3037T C14408T C17135T A23403G G28089T GGG28881AAC

MT607247
 2020-06-01 2020-06-13
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_080/2020
 C241T C3037T G11719A C14408T A23403G GGG28881AAC

MT607248
 2020-06-01 2020-06-13
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_083/2020
 C241T A1163T C3037T A10323G C10833T C14408T G19648T A23403G C25626T C26600T T26663C G28774T GGG28881AAC G29587T

MT776904
 2020-06-01 2020-07-20
 Egypt SARS-CoV-2/human/EGY/Egy-Army-MCL001/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAA29883-

MW006556
 2020-06-01 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020099251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C9447T C14408T C20555T A21137G A23403G G25563T

MW006557
 2020-06-01 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020099255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C9447T C14408T C20555T A23403G G25563T

MW006559
 2020-06-01 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020099258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C9447T C14408T C20555T A23403G G25563T

EPI_ISL_456661
 2020-06-02 2020-06-02
 United Kingdom hCoV-19/England/BIRM-5EEAF/2020
 C241T T1918C C3037T C14408T C18877T A23403G G25563T T26129G G28882T G29348T

EPI_ISL_456707
 2020-06-02 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2B92/2020
 C241T C3037T C6861T C14408T C17403T C19170T G19509A A23403G GGG28881AAC

EPI_ISL_456734
 2020-06-02 2020-06-02
 United Kingdom hCoV-19/England/CAMB-1B2EE4/2020
 C241T A1620G C3037T C4002T A6604G G10097A G11083T C13536T C14408T A23403G C23731T C27059T GGG28881AAC

EPI_ISL_457025
 2020-06-02 2020-06-02
 United Kingdom hCoV-19/England/EXET-134FAB/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457026
 2020-06-02 2020-06-02
 United Kingdom hCoV-19/England/EXET-134FC9/2020
 C241T C3037T C14408T A23403G C25350T C29028A

EPI_ISL_457027
 2020-06-02 2020-06-02
 United Kingdom hCoV-19/England/EXET-134FD8/2020
 C241T C3037T C14408T A23403G C25350T C29028A

EPI_ISL_457030
 2020-06-02 2020-06-02
 United Kingdom hCoV-19/England/EXET-1350D4/2020
 C241T C3037T C5005T C14408T A23403G GGG28881AAC C29555T

EPI_ISL_457137
 2020-06-02 2020-06-02
 United Kingdom hCoV-19/England/EXET-135B5B/2020
 C241T G2164A C3037T C14408T A23403G GGG28881AAC

EPI_ISL_457152
 2020-06-02 2020-06-02
 United Kingdom hCoV-19/England/EXET-135C94/2020
 C241T C3037T C14408T A21936G A23403G GGG28881AAC

EPI_ISL_461965
 2020-06-02 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111B64/2020
 A187G C241T C823T C3037T T8473C C14408T T22369C A23403G C24237T G28882T

EPI_ISL_461967
 2020-06-02 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111B82/2020
 G199T C241T A2526C C3037T G6349C C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_461968
 2020-06-02 2020-06-06
 United Kingdom hCoV-19/England/NOTT-111BA0/2020
 A2480G C2558T C2940T G11083T C14805T A24373G G26144T

EPI_ISL_467517
 2020-06-02 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0167/2020
 ATTA1- C241T C3037T C14408T C16376T A23403G C24034T G28628T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_467521
 2020-06-02 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0171/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C16376T A23403G C24034T G28628T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_467522
 2020-06-02 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C16376T A23403G C24034T G28628T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_467523
 2020-06-02 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C16376T A23403G C24034T G28628T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_468159
 2020-06-02 2020-06-16
 Pakistan hCoV-19/Pakistan/NIH-44905/2020
 ATTAAAGGTTTATAC1- C355T T2461C C8782T G11230T A24051C C26313T T28144C G28167A G28878A G29742A AAAAAAAAAAAA29892-

EPI_ISL_468160
 2020-06-02 2020-06-16
 Pakistan hCoV-19/Pakistan/NIH-45143/2020
 ATTAAAGGTTTATA1- C241T C2416T C3037T G8371T T10738A G11083T C14408T C22477T A23403G G25563T T25706C A29865R G29868A AAAAAAAAAAAA29892-

EPI_ISL_468161
 2020-06-02 2020-06-16
 Pakistan hCoV-19/Pakistan/NIH-45090/2020
 ATTAAAGGTTT1- C241T C2416T C3037T G8371T G11083T C14408T C22477T A23403G G25563T G28027T C29696T AAAAAAAAAAAA29892-

EPI_ISL_468162
 2020-06-02 2020-06-16
 Pakistan hCoV-19/Pakistan/NIH-45579/2020
 ATTAAAGGTTT1- C241T C1613T C2416T C3037T T3613C G8371T G11083T C14408T T18603C C18788T C22477T A23403G G25563T G28378C G28878A AAAAAAAAAAAA29892-

EPI_ISL_468163
 2020-06-02 2020-06-16
 Pakistan hCoV-19/Pakistan/NIH-HAS001/2020
 ATTAAAGGTT1- T2461C C8782T G11230T A24051C C26313T T28144C G28167A G28878A G29742A AAAAAAAAAAAA29892-

EPI_ISL_469032 MT676397
 2020-06-02 2020-06-17
 India SARS-CoV-2/human/IND/GBRC189/2020
 C241T C3037T C8937T C14408T C18877T G20326A A23403G G25563T G26152T C26735T T29859C

EPI_ISL_469285 MT657958
 2020-06-02 2020-06-18
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_090/2020
 C241T A1163T G1820A C3037T A3234G C14408T A23403G GGG28881AAC G29260T G29736T -29838TAGCATTGTTCACTGTACACTCGATCGTACT

EPI_ISL_469300
 2020-06-02 2020-06-18
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_091/2020
 C241T A1163T C3037T C3961T C12672T C14408T T23101G A23403G G23587T GGG28881AAC T29785C

EPI_ISL_471144
 2020-06-02 2020-06-19
 United States hCoV-19/USA/MN-GMF-05101/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T AAGTCATTT686- G2123A G2867A C3037T C14408T A23403G G25720T G28817A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_471633
 2020-06-02 2020-06-22
 India hCoV-19/India/CCMB_L1781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T A2376G C2485T C3037T G4354A C6573T C8090T G12202T C14408T A23403G C25528T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471634
 2020-06-02 2020-06-22
 India hCoV-19/India/CCMB_L1806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C2325T C3037T G4354A C6573T A12547T C12823T C14408T G14718A A23403G C25528T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471635
 2020-06-02 2020-06-22
 India hCoV-19/India/CCMB_L1809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C313T C3037T C5700A C9693T C10815T C14408T C16626T C19875A A23403G GGG28881AAC G29474T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471636
 2020-06-02 2020-06-22
 India hCoV-19/India/CCMB_L1810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C6026T C14408T G17019T C21191T C23123T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471637
 2020-06-02 2020-06-22
 India hCoV-19/India/CCMB_L1811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G4354A C6573T C14408T A23403G A25381C C25528T C26256T C28087T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471638
 2020-06-02 2020-06-22
 India hCoV-19/India/CCMB_L1819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T A4372G C9693T C14408T C16626T G19947T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471640
 2020-06-02 2020-06-22
 India hCoV-19/India/CCMB_L1824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G3774A G4354A C6573T C14408T C21304T A23403G C25528T C25693T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_472098
 2020-06-02 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A0293/2020
 ATTAAAGGTTT1- C241T C3037T G3323A C14408T C16859T C20555T G21372T A23403G C28006T GGG28881AAC C29870A

EPI_ISL_472133
 2020-06-02 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A0767/2020
 C241T C601T C3037T T13827C C14408T A23403G GGG28881AAC G29474T

EPI_ISL_472135
 2020-06-02 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A0785/2020
 C241T C3037T G10097A C14408T A23403G C23731T C26198T A26530G G28580T C28720T GGG28881AAC C29421T

EPI_ISL_473074
 2020-06-02 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-16244B/2020
 ATTA1- C241T C1059T C2065T C3037T G4207T T9485C C10376T C14408T G18583T A23403G G23868T G24368T G25563T G27390C G28237K G29773T AAAAAAAAAAAAAAA29889-

EPI_ISL_473434
 2020-06-02 2020-06-23
 United Kingdom hCoV-19/England/BIRM-61164/2020
 C241T C337T C3037T C10456T C14408T C14724T A23403G G28396T GGG28881AAC C28961T

EPI_ISL_473471
 2020-06-02 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B43E3/2020
 C241T C3037T C14408T C19140T C19374T A23403G GGG28881AAC

EPI_ISL_473472
 2020-06-02 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B442C/2020
 C241T C3037T C4012T C14408T C14676T C19140T C19374T A23403G GGG28881AAC C29200T

EPI_ISL_473477
 2020-06-02 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B45A1/2020
 C241T C1191T C3037T C14408T C16173T C19140T C19374T A23403G G26620C A28211G GGG28881AAC

EPI_ISL_473852
 2020-06-02 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5745/2020
 C241T C1377T C3037T C14408T C16289T A23403G G25429T G28077T

EPI_ISL_473853
 2020-06-02 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5746/2020
 C241T TGGTCATGTTATGGT508- T1576C C3037T G13249T C14408T G15906T A20268G A23403G G25298A C25844T C28854T

EPI_ISL_473854
 2020-06-02 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB5747/2020
 C241T C1101T C3037T C7011T T9151A C14408T A23403G T25451C A25798G GGG28881AAC

EPI_ISL_473935
 2020-06-02 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6322/2020
 C241T C1101T C3037T A5010G C7011T C14408T A23403G A25798G GGG28881AAC

EPI_ISL_475531
 2020-06-02 2020-06-23
 Sweden hCoV-19/Sweden/20-51830/2020
 C241T C1500T C3037T C8937T C10369T C14408T A15753G A23403G GGG28881AAC

EPI_ISL_475532
 2020-06-02 2020-06-23
 Sweden hCoV-19/Sweden/20-51831/2020
 C241T C244T C1500T C3037T C8937T C10369T C14408T A15753G A23403G GGG28881AAC

EPI_ISL_475722 MT658507
 2020-06-02 2020-06-23
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC5I015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T A11991G C16915T C18877T C22286T A23403G G25563T G29734T G29751T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_477161 MT661524
 2020-06-02 2020-06-24
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC6I029/2020
 AT1- C3037T C12242T C14408T C16457T C18877T G21123T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_477210
 2020-06-02 2020-06-29
 India hCoV-19/India/InStem_NCBS_0007/2020
 ATTAAAGGTTTA1- C241T C2836T C3037T C6541T C6665T C8320T C14408T C14925T C18877T C22444T A23403G G25563T G25660T C26735T C28854T

EPI_ISL_477211
 2020-06-02 2020-06-29
 India hCoV-19/India/InStem_NCBS_0008/2020
 A1T T3C A5G G7C T10G ATA12GCT C16T -18CCGATC C241T C2836T C3037T C6541T C6665T C8320T C11003T C14408T C14925T C18877T C22444T A23403G G25563T G25660T C26735T C28854T AA29882TG A29885C

EPI_ISL_477310
 2020-06-02 2020-06-29
 United States hCoV-19/USA/MN-MDH-1221/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11750T C14408T C15324T C16260T C21575T A23403G G25563T C28821A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_477741
 2020-06-02 2020-06-30
 United Kingdom hCoV-19/England/BIRM-60693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2299T C3037T G3955T TCAAATTCG6329- C14408T A23403G C23655T T25663C C26936T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478118
 2020-06-02 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C292T C3037T C9808T C10798A C13862T C14408T C21575T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478156
 2020-06-02 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4423T C9180T C14408T C15324T A16882G G19542T G20679A A23403G T27576G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478198
 2020-06-02 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB5740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1377T C3037T C14408T C16289T A23403G G25429T TTTAGCACTCAAT27568- G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478237
 2020-06-02 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1377T C3037T C14408T C16289T A23403G G25429T TTTAGCACTCAAT27568- G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478238
 2020-06-02 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1377T C3037T C14408T C16289T A23403G G25429T TTTAGCACTCAAT27568- G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478239
 2020-06-02 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1377T C3037T C14408T C16289T A23403G G25429T TTTAGCACTCAAT27568- G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478240
 2020-06-02 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTTATG515- C1377T C3037T C14408T C16289T A23403G G25429T TTTAGCACTCAAT27568- G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478241
 2020-06-02 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1377T C3037T C14408T C16289T A23403G G25429T TTTAGCACTCAAT27568- G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478242
 2020-06-02 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1377T C3037T C14408T C16289T A23403G G25429T TTTAGCACTCAAT27568- G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478314
 2020-06-02 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D69A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T C21575T C22858T A23403G GGG28881AAC TTTTCCG29581-

EPI_ISL_478379
 2020-06-02 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A0284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T C12005T C14408T A23403G -28029TA GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478380
 2020-06-02 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A0309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C2388T C3037T C10507T C12005T C14408T A23403G -28029TA GGG28881AAC C29870A

EPI_ISL_478672 MT614596
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC6I010/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C6927T T11525C C18877T A23403G G25563T C28977T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_479686 MT624728
 2020-06-02 2020-06-16
 Egypt SARS-CoV-2/human/EGY/CUNCI- HGC3I02/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T3011Y C3037T G4354K C5020Y A9483M A23403G G25563T C28849Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_479687 MT624733
 2020-06-02 2020-06-16
 Egypt SARS-CoV-2/human/EGY/CUNCI- HGC3I03/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C5284T C14408T A23403G G25563T C28849T G29744A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479688 MT627389
 2020-06-02 2020-06-16
 Egypt SARS-CoV-2/human/EGY/CUNCI- HGC3I06/2020
 C241T C3037T C5284T C14408T C18329Y A23403G G25563T C28849T G29744A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_479689 MT627390
 2020-06-02 2020-06-16
 Egypt SARS-CoV-2/human/EGY/CUNCI- HGC3I07/2020
 ATTAAAGG1- C241T C3037T C5284T C14408T A23403G G25563T C28849T G29744A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_479690 MT627391
 2020-06-02 2020-06-16
 Egypt SARS-CoV-2/human/EGY/CUNCI- HGC3I05/2020
 C241T T3011C C3037T G4354T C5020T A9483C C14408T A23403G AAAAA29899-

EPI_ISL_479691 MT627392
 2020-06-02 2020-06-16
 Egypt SARS-CoV-2/human/EGY/CUNCI- HGC3I025/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G219K C241T A2952R T3011C C3037T G4354T C5020T A9483C C9598Y T15454Y A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479692 MT627393
 2020-06-02 2020-06-16
 Egypt SARS-CoV-2/human/EGY/CUNCI- HGC3I09/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T T3011Y C3037T G4354K G4444K C5020Y A9483M C14408Y C16952Y C18029Y C18877Y A23403G G24415R G25563T C27741Y A29500G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_479693 MT627394
 2020-06-02 2020-06-16
 Egypt SARS-CoV-2/human/EGY/CUNCI- HGC3I012/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C4990T C5467T T9982C C14408T A18259R C18877T A23403G G25563T A27456G C27689T T29317C GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_479694 MT627395
 2020-06-02 2020-06-16
 Egypt SARS-CoV-2/human/EGY/CUNCI- HGC3I013/2020
 ATT1- C241T C2113T C2940T C3037T C7113T C14408T G22785T A23403G G28321A A28591T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_479695 MT627396
 2020-06-02 2020-06-16
 Egypt SARS-CoV-2/human/EGY/CUNCI- HGC3I023/2020
 AT1- C241T T3011Y C3037T C3096Y A3959R G4354K C5284Y A9483M C14408T A23403G G25563K C28849Y G29744A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_479696 MT627404
 2020-06-02 2020-06-16
 Egypt SARS-CoV-2/human/EGY/CUNCI- HGC3I014/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2940Y C3037T C14408T C18877Y G22785K A23403G G25563K G28321R GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_479697 MT627405
 2020-06-02 2020-06-16
 Egypt SARS-CoV-2/human/EGY/CUNCI- HGC3I011/2020
 AT1- C241T C3037T G6884A T7438Y C14408T C15866S C18877T A23403G G25563T A29735G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479698 MT627406
 2020-06-02 2020-06-16
 Egypt SARS-CoV-2/human/EGY/CUNCI- HGC3I08/2020
 C241T C3037T C5284T C14408T C18877Y A23403G G25563T C28849T G29744A AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_479699 MT609918
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC4I003/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G2809T C3037T C3373A G4201T C14408T A14873G C17550T C18652T C18788T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479700 MT610913
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC4I004/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T769C C1404T C3037T C3373A C14408T A23403G G28077T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_479701 MT611440
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC4I029/2020
 C241T C3037T C4002T G7042T G10046A G10097A C12534T C13536T C14408T A23403G G23593T C23731T GGG28881AAC G28908T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_479702 MT611441
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC4I026/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1148T C3037T A11716G C14408T ATACCACTTCAGAGAGCTAGGTGTTGT14475- C17678T C17934T A23403G G25563T C28849T C28866T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_479703 MT611442
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC4I030/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T A3184G C12400T C14408T C18877T A20992G A23403G G25563T C29118T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_479704 MT611443
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC4I033/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G127K C3037T G6307K C12596Y C16457Y C18877Y A23403G G25563T C28253Y A28841R TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_479705 MT611444
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC4I022/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C313T C1091T C1684T C3037T G3403T C6525T C8240T C14408T C18555T A23403G GGG28881AAC G29179T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479706 MT611448
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC4I025/2020
 ATTA1- C241T C3037T G5230T C9120Y C12049T C14408T C16457T C18877T A23403G G25563T C25936T AAAAAAAAAAAA29892-

EPI_ISL_479707 MT611449
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC4I031/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2841T C3037T G3728T C4002T G10097A C12534T C17766T C21597T A23403G G23593T C23731T GGG28881AAC G28908T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_479708 MT611450
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC4I034/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18877T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_479709 MT611451
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC4I032/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T AAGTCATTT686- C3037T C3373A C14408T AGAGCTAGGTGTTGT14487- G17944T G23270T A23403G G26199A GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479710 MT611527
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC5I001/2020
 ATTAAAGGTTTATACC1- C241T G677R C2706Y C3037T C3373M C5296Y C9520Y G9968K C14408T G16647K T18154Y T18423W C21855Y T22360Y A23403G T23480K GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479711 MT611530
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC5I003/2020
 ATTAAAGGTTTAT1- C241T T3011Y C3037T G4354T C5020T A9641R C14408T G16647K T21240C A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_479712 MT611536
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC5I011/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G677R C934Y C2706Y C3037T C3373M G9968K C14408T G16647K A23403G T23480K GGG28881AAC G29779R AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479713 MT611537
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC5I012/2020
 ATTAAAGGTTTATACCTTCC1- C241T C934Y C3037T C9520T C14408T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479714 MT611538
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC5I014/2020
 C241T C3037T A11991G C14408T C16915T C18877T A23403G G25563T G29734T G29751T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_479715 MT611539
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC5I022/2020
 AT1- C241T C934T C3037T C9520T C14408T A23403G GGG28881AAC AAA29901-

EPI_ISL_479717 MT614347
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC5I033/2020
 C241T C1997Y C3037T C3140Y C3373M T11731Y G13348K A14058R C14408T C17528Y G20569K C21359Y C21575Y A23403G G25563K C27752Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_479718 MT614348
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC6I003/2020
 ATTAAAGGTTTATACCTTCCCAG1- G2305T C3037T C3373A C12534Y C14408T A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479719 MT614349
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC6I002/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C4002T G10097A C12534T C13536T C14408T A23403G G23593T C23731T C28846T GGG28881AAC G28908T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_479720 MT614356
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC5I034/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C3037T C3373A C14408T A23403G A27424W AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479721 MT614357
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC5I030/2020
 C241Y C3037T A10323R C14408T C14937Y C20555Y A23403G T24940Y G25563K A27107M C27982M G29405S AAAAAAAA29896-

EPI_ISL_479722 MT614595
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC6I007/2020
 C241T G806A C3037T C4002Y G10097A C12534Y G13348K C13536Y C14408T A23403G G23593K C23731Y G25563K A26896R T28879W G28908K AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_479723 MT614597
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC6I033/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G806A C3037T G10097A C12534T C13536T C14408T G15327K A23403G G23593T C28846T GGG28881AAC G28908T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_479724 MT614598
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC6I026/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C4002T C9967T G10097A C12534T C13536T C14408T A23403G G23593T C23731T C28846T GGG28881AAC G28908T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479725 MT614599
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC6I015/2020
 AT1- C241T C313T C1191T C3037T C6401T C12676T C14408T G21157A A23403G GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_479726 MT614600
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC6I009/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C4002T G10097A C12534T C13536T C14408T A23403G G23593T C23731T C28846T GGG28881AAC G28908T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_479727 MT614601
 2020-06-02 2020-06-15
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC6I011/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C8782T C10969T C12754T G17014T G19525K G22468T G25555T C25904T C27294T T28144C G28878A G29179T G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_479728 MT648830
 2020-06-02 2020-06-22
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC4I015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C2706T C3037T C3373A G9968T C14408T G16647T A23403G T23480G GGG28881AAC TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_479729 MT658264
 2020-06-02 2020-06-23
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC4I023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C3373A C14408T G16846T C21575T TTA21991- A23403G GGG28881AAC TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_479730 MT658500
 2020-06-02 2020-06-23
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC5I010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C1997Y C3037T C3140Y G9968K T11731Y A14058R G16647K G20569K A23403G T23480K G25563K GGG28881AAC TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_479731 MT658501
 2020-06-02 2020-06-23
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC5I016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T A6081G C14408T C21549T A23403G G25563T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_479732 MT658502
 2020-06-02 2020-06-23
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC6I024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C3373A C14408T C17550T C18788T C21575T A23403G GGG28881AAC GGCCACGCGGAGTACGATCGAGTGTACAGTG29736- TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_479733 MT658503
 2020-06-02 2020-06-23
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC6I032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C4002T G10097A C12534T C13536T C14408T A23403G G23593T C23731T C28846T GGG28881AAC G28908T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_479734 MT658504
 2020-06-02 2020-06-23
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC5I029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T G14055K C18501T T21973Y A23403G G25287K G25563T C28849Y TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_479735 MT658505
 2020-06-02 2020-06-23
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC5I026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- T76W T78K C934T C3037T C3131M G5665R C9520T C14408T T18708Y AT21536TA T21539A A23403G G26466S TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_481157
 2020-06-02 2020-07-02
 India hCoV-19/India/ILSCV32485/2020
 C241T C3037T C14408T T15741C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481158
 2020-06-02 2020-07-02
 India hCoV-19/India/ILSCV32486/2020
 C241T C3037T C14408T T15741C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482005
 2020-06-02 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DE8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11164G C14408T G15406T G21538T G22332A A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482682
 2020-06-02 2020-07-05
 Singapore hCoV-19/Singapore/544/2020
 C6310A C6312A C9985T G11083T C13730T A19494G C19524T C23929T C28311T

EPI_ISL_482683
 2020-06-02 2020-07-05
 Singapore hCoV-19/Singapore/318/2020
 C3743T C14877T C16948T A28792G

EPI_ISL_482686
 2020-06-02 2020-07-05
 Singapore hCoV-19/Singapore/538/2020
 C3743T C14877T C16948T A28792G

EPI_ISL_482687
 2020-06-02 2020-07-05
 Singapore hCoV-19/Singapore/539/2020
 C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T

EPI_ISL_482966
 2020-06-02 2020-07-06
 United States hCoV-19/USA/MN-MDH-1245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C346T C1059T C3037T G11083T C14408T C15857A T22552C A23403G G25563T C25889T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_482971
 2020-06-02 2020-07-06
 United States hCoV-19/USA/MN-MDH-1250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C9866T C14408T A14747G A18195G A20755C G22017T A23403G G25563T G26775T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_482972
 2020-06-02 2020-07-06
 United States hCoV-19/USA/MN-MDH-1251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T559C C1059T C3037T C8344T T13177A C14408T C17639T C18646T A23403G G25563T G28373T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_483514
 2020-06-02 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1087-SAN/2020
 ATTAAAG1- C21T C241T C3033T C3037T C4582T C8175T C14408T G16416C T18352C A20268G C22227T A23403G C28744T

EPI_ISL_483665
 2020-06-02 2020-07-08
 Switzerland hCoV-19/Switzerland/150040_432_C02_plus/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2147T C3037T C13381Y C13968Y C14408T G15958T A23403G C26801T GGG28881AAC T28981C G29260T G29736T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483666
 2020-06-02 2020-07-08
 Switzerland hCoV-19/Switzerland/150041_433_C09_plus/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2127G A2905W G2957S T3028Y C3037T T3095K T3100K T3104K T3106K T3110K T3112K T3118K T3142K T3144B A3550R G5572R G6884R T6971W C14408T C19488T G19729T A23403G G23675T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483882
 2020-06-02 2020-07-08
 United Kingdom hCoV-19/England/BIRM-60718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4207T G10097A C14408T A19946G A23403G G23612T C23731T G24193C C27978T G28198T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484829
 2020-06-02 2020-07-08
 United States hCoV-19/USA/IL-UW-454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7168C C14408T T15354C C18877T C20629T A23403G A24779G G25563T C29311T AACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGCTGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGC29356- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484872 MT750080
 2020-06-02 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484890 MT750096
 2020-06-02 2020-07-08
 United States SARS-CoV-2/human/USA/IL-UW-515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485605
 2020-06-02 2020-07-09
 United Kingdom hCoV-19/England/202561784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3773Y C9979T A10323G C14408T A20268G G21778A A23403G G29195T C29272T AAAAAAAAAAA29893-

EPI_ISL_485606
 2020-06-02 2020-07-09
 United Kingdom hCoV-19/England/202561785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G1655R C3037T C9979T A10323G C14408T A20268G G21778A A23403G G29195T C29272T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_486116
 2020-06-02 2020-07-10
 United States hCoV-19/USA/CA-CZB-1782/2020
 C241T C1059T C3037T C7834T G11083T C14408T A23122R A23403G G25563T T25902W T25908W G25913S

EPI_ISL_487432
 2020-06-02 2020-07-14
 Belgium hCoV-19/Belgium/ITM_C2184_2/2020
 C241T C1913T C3037T A4457G C5907T C10252T C12312T C14408T C15324T C16289T A23403G

EPI_ISL_488182
 2020-06-02 2020-07-14
 United Kingdom hCoV-19/England/NORT-2930C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488857
 2020-06-02 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A2A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2005T C3037T C14376T C14408T A21076G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488866
 2020-06-02 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A2BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7020G C7420T C9714T G11083T C14408T A23403G G25563T T25577G C25904T A26358G G26842A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489716 MT757115
 2020-06-02 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0307/2020
 ATTA1- C241T C920T C1059T C3037T C10188T C14408T T22220C A23403G T24982C G25563T G26814T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_489717 MT757116
 2020-06-02 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0308/2020
 AT1- C241T T833C C1059T C3037T G3692T C14408T G15438T C16954T A20142G A23403G G25563T G25906T C27964T C28005T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_489718 MT757117
 2020-06-02 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0309/2020
 AT1- C241T T833C C1059T C3037T G3692T C14408T G15438T C16954T A20142G A23403G G25563T G25906T C27964T C28005T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_490444
 2020-06-02 2020-07-15
 United Kingdom hCoV-19/England/NORT-29310D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C2306T C3037T A14061G C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492191
 2020-06-02 2020-07-20
 United Kingdom hCoV-19/England/CAMB-1B45DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T C14408T C16173T C19140T C19374T A23403G G26620C A28211G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492194
 2020-06-02 2020-07-20
 United Kingdom hCoV-19/England/CAMB-1B4565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T C5314Y C14408T C16173T C19140T C19374T A23403G G26620C A28211G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492196
 2020-06-02 2020-07-20
 United Kingdom hCoV-19/England/CAMB-1B4626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G8863A C14408T C16173T C19140T C19374T A23403G G26620C A28211G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492206
 2020-06-02 2020-07-20
 United Kingdom hCoV-19/England/CAMB-1B44D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T C14408T C16173T C19140T C19374T A23403G G26620C A28211G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493463
 2020-06-02 2020-07-21
 United Kingdom hCoV-19/England/NORT-285D64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163G C3037T A3481T C14408T C20429T G20995T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493496
 2020-06-02 2020-07-21
 United Kingdom hCoV-19/England/NORT-29B642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493497
 2020-06-02 2020-07-21
 United Kingdom hCoV-19/England/NORT-29B660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2939T C3037T C4455T C5956T T7792C C10252T C13965T C14408T C14786T G21606T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494135
 2020-06-02 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166FA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T4186C G11801A C14408T C19164T T19839C A23403G G23868T G25552T C27641T GGG28881AAC A29526T

EPI_ISL_495164
 2020-06-02 2020-07-22
 India hCoV-19/India/CCMB_L1822_ONT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C815T C3037T G3774A G4354A C5730T C6573T A10730C C14408T G15535T C16733T A23403G T23689G C25528T C25693T GGG28881AAC G28979A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_495165
 2020-06-02 2020-07-22
 India hCoV-19/India/CCMB_L1824_ONT/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T G3774A G4354A C6573T C14408T C21304T A23403G C25528T C25693T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_496164 MT834258
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1738/2020
 AT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_496165 MT834308
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1739/2020
 ATTAAAGGTTTAT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496166 MT834325
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1740/2020
 ATTAAAG1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496167 MT834319
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1741/2020
 ATTAAAG1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496169 MT834309
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1743/2020
 ATTAAAGGTTT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496171 MT834337
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1745/2020
 ATTAAAGGTTTATA1- G11417T C14408T C17747T A17858G A23403G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496173 MT834046
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1747/2020
 ATTAAAGGTTT1- C241T G343T G970A C3037T C9565T C14408T C15933T G16968T T19839C A23403G C25587T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496187 MT834095
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1761/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C25710T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496206 MT834304
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1780/2020
 ATTAAAGGTTTAT1- C8782T G11417T G15406A T16993A C17010T C17747T G17790T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496207 MT834244
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1781/2020
 ATTAAAGGTTT1- C241T C3037T T5335C C6445T G14186A C14408T G16813A G16852T A23403G GGG28881AAC G29392T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496208 MT834073
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1782/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C25710T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496209 MT834067
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1783/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C25710T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496210 MT834269
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1784/2020
 AT1- C241T C3037T C6445T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496211 MT834042
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1785/2020
 A1- C241T C3037T A12410G G12832T C14408T G19101T G19384A T19632A T19839C G21800T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496212 MT834029
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1786/2020
 ATT1- C241T C3037T A12410G G12832T C14408T G19101T G19384A T19632A T19839C G21800T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_496213 MT834339
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1787/2020
 ATTAAAGGTTTATAC1- C241T C1059T C2508T C3037T A9782G C12100A C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496214 MT834058
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1788/2020
 AT1- C241T C3037T C3992T G4510T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496215 MT834016
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1789/2020
 ATTAAAG1- C241T C1800T C3037T C11020T C14408T T15528C C15933T G16968T T19839C A23403G C28725T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496216 MT834268
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1790/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496217 MT834277
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1791/2020
 ATTAAAGGTT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496218
 2020-06-02 2020-07-24
 United States hCoV-19/USA/WA-S1792/2020
 A1- G1401A G2051A C8782T C16887T C17747T A17858G C18060T A19308G C20031T A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496219 MT833998
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1793/2020
 AT1- C241T C3037T C14408T G15260T C15933T G16968T T19839C A23403G G26428T C27213T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496220 MT834093
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1794/2020
 AT1- C241T C3037T C6445T C14216T C14408T G16813A C20389T A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_496222 MT834166
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1796/2020
 ATTAAAGGTT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496223 MT834053
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1797/2020
 AT1- C241T C3037T C7973T C14408T C15933T G16968T G18985T T19839C C21727T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496224 MT834106
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1798/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496225 MT834222
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1799/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C11224T C14408T C15933T G16968T T19839C A23403G C26607T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496226 MT834239
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1800/2020
 ATTAAAGGTT1- C241T C1059T C2508T C3037T C5512T C14408T A19908G A23403G G25563T T26870A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496228 MT834297
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1802/2020
 A1- C241T C1059T C2508T C3037T C12525T C14408T A23403G G24933T G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_496229 MT834088
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1803/2020
 ATTAAAGGTT1- C241T C3037T C9559T C14408T C15933T G16968T T19839C A23403G G26428T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_496230
 2020-06-02 2020-07-24
 United States hCoV-19/USA/WA-S1804/2020
 ATT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_496231 MT833987
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1805/2020
 ATTAAAGGTT1- C241T C3037T G8075A G10996T C11956T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496232 MT834196
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1806/2020
 ATTAAA1- C241T G2144T C3037T C3768T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496233 MT834123
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1807/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G26428T C28409T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496234 MT834034
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1808/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496235 MT834133
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1809/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G26428T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496236 MT833995
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1810/2020
 ATT1- C241T C3037T C3992T G4288T G4510T C14408T C15933T T19839C A23403G T25451C G25489T A27489T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496237 MT834160
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1811/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G26428T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496239 MT834086
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1813/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496240 MT834221
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1814/2020
 ATTAAA1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C25710T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_496241 MT834187
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1815/2020
 ATTAAAG1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G25313A GGG28881AAC C29200T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496243 MT834119
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1817/2020
 ATTAAAG1- C241T C3037T G6884A C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_496244 MT834223
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1818/2020
 ATTAAAGGTT1- C241T C1060T C3037T C14408T T19839C A23403G C28256T G28314A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496245 MT834299
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1819/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_496246 MT834118
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1820/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29762T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_496250 MT834237
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1824/2020
 ATTAAAGGTTTA1- C241T C584T C3037T C14408T C15933T G16968T T19839C A23403G G26428T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496252 MT834172
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1826/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496253 MT833975
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1827/2020
 AT1- C241T C3037T C3992T G4288T G4510T C14408T C15933T T19839C A23403G T25451C G25489T A27489T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497342 MT831195
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1913/2020
 AT1- C241T C2508T C3037T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497343 MT831328
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1914/2020
 AT1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC G28985A C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497344 MT831164
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1915/2020
 AT1- C241T C3037T C3992T G4288T G4510T C14408T C15933T T19839C A23403G T25451C G25489T A27489T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497346 MT831316
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1917/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C25710T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497347 MT831475
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1918/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C6445T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497348 MT831129
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1919/2020
 ATTAAAGGTTTAT1- C241T C3037T C3992T G4288T G4510T C14408T C15933T T19839C A23403G T25451C G25489T C26456T A27489T C27629T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497365 MT831223
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1937/2020
 A1- C241T C2470T C3037T G6404T C14408T C15933T G16968T T19839C A23403G G28565T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497368 MT831447
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1940/2020
 AT1- C241T C3037T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497370 MT831197
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1942/2020
 AT1- C241T C1060T C3037T C14408T T19839C A23403G G25445A C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497371 MT831408
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1943/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497372 MT831382
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1944/2020
 AT1- C241T C3037T A4197G C14408T G16813A G23349T A23403G G24368C T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497373 MT831462
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1945/2020
 ATTAAAG1- C241T C3037T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497374 MT831255
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1946/2020
 AT1- C241T C3037T C10189T C14408T C15933T G16968T T19839C A23403G G28080A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497375 MT831374
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1947/2020
 A1- C241T C3037T C6445T C14216T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497379 MT831429
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1951/2020
 AT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497383 MT831434
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1955/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497384 MT831308
 2020-06-02 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1956/2020
 ATTAAAGGTTTAT1- C241T C3037T C10138T C14408T C15933T G16968T T19839C A21717T A23403G GGG28881AAC C29719T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508168
 2020-06-02 2020-08-04
 India hCoV-19/India/AR20/2020
 ATTA1- C241T T1947C C3037T C8664T C14408T C18877T C22444T A23403G G25563T G25819T C26735T G28690T C28854T TT29726- G29868A

EPI_ISL_508181
 2020-06-02 2020-08-04
 India hCoV-19/India/AR33/2020
 ATT1- A6T G3323A C8782T T10516C G10870T G11230T A14339G A20695G A23586G A23598C C25714T T28053C T28144C G28167A G28878A G29742A G29868A

EPI_ISL_508482
 2020-06-02 2020-08-04
 India hCoV-19/India/S93/2020
 A4- C241T C3037T C3634T G7753T C14408T C15324T A21006T A23403G A27344G G28857T G29868A

EPI_ISL_509830 MT846514
 2020-06-02 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11761T C12025T G14212T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509831 MT846515
 2020-06-02 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6317T C12025T C14408T T19839C A23403G C23707T T27071C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510532 MT798592
 2020-06-02 2020-07-25
 Egypt SARS-CoV-2/human/EGY/HCoV2-Egy-002/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29865T A29871G AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_511805
 2020-06-02 2020-08-08
 United States hCoV-19/USA/CA-IGI-0050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C2668T C3037T C14408T T19584C A23403G G25563T G29715T

EPI_ISL_511829
 2020-06-02 2020-08-08
 United States hCoV-19/USA/CA-IGI-0075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C8802T G11083T C11916T C14408T A18108G G18898A C18998T T21075C A23403G G25563T G25947C G27703T G28068T G29540A

EPI_ISL_513852 MW036056
 2020-06-02 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4002T T11472Y C14408T G17338T C18877Y G20709T A21080C A23403G G25563T C27884Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514802
 2020-06-02 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2399/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T A4903G C11916T C14408T C16650T A20675T A23403G T25525C G25563T G29179T G29779T A29869T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514804
 2020-06-02 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2401/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514807
 2020-06-02 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2404/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T C22551T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514808
 2020-06-02 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514809
 2020-06-02 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2406/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514810
 2020-06-02 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2407/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11563T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514811
 2020-06-02 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2408/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29742T G29779T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_514812
 2020-06-02 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2409/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_515459
 2020-06-02 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0205/2020
 ATTA1- C241T C3037T C6781T C11916T C14408T G18756T C19185T A23403G GGG28881AAC G29462C

EPI_ISL_515460
 2020-06-02 2020-08-19
 United States hCoV-19/USA/NV-NSPHL-A0206/2020
 ATTA1- C241T C1059T C1347T C3037T T5143G G6566T G11744A C14408T A23403G G25563T

EPI_ISL_516887
 2020-06-02 2020-08-24
 Israel hCoV-19/Israel/CVL-n17372/2020
 C241T C683T C1059T C3037T T3547C C5144T C6402T G8572T G9434A G11083T C14408T G17427T A23403G G25563T G25690T

EPI_ISL_516888
 2020-06-02 2020-08-24
 Israel hCoV-19/Israel/CVL-n17884/2020
 C241T C683T C1059T C3037T C5144T C6402T G8135A G8572T T9518C G11083T C14408T G17427T A23403G G25563T G25690T

EPI_ISL_516889
 2020-06-02 2020-08-24
 Israel hCoV-19/Israel/CVL-n17916/2020
 C241T C1059T C3037T C4455T C11916T C14408T C18998T A23403G G25563T G26217T G29540A A29752T

EPI_ISL_520677
 2020-06-02 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L2006030187/2020
 C241T C3037T C5392T C14408T C14932T A23403G GGG28881AAC

EPI_ISL_523144
 2020-06-02 2020-08-26
 Netherlands hCoV-19/Netherlands/FR-EMC-52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T24214C G25244C GGG28881AAC A29433G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523145
 2020-06-02 2020-08-26
 Netherlands hCoV-19/Netherlands/FR-EMC-53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T24214C G25244C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523281
 2020-06-02 2020-08-26
 Netherlands hCoV-19/Netherlands/LI-EMC-76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3250T C14408T G17641T T19209C A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523341
 2020-06-02 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C854T C3037T C12357T C14408T C17135T C17410T G17632T C18877T G20718T C22444T A23403G G25563T C26735T C28854T C29520T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523342
 2020-06-02 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12357T C14408T C17135T G17632T C18877T C19512T G20718T C22444T A23403G G25563T C26735T C28854T C29719G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523343
 2020-06-02 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12357T C14408T C17135T G17632T C18877T C19512T G20718T C22444T A23403G G25563T C26735T C28854T C29719G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523553
 2020-06-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2885A C3037T T10387A C14408T G20275A A23403G G25055T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523554
 2020-06-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20275A A23403G G25055T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_523555
 2020-06-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2885A C3037T C14408T G20275A A23403G G25055T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_526904
 2020-06-02 2020-09-02
 United States hCoV-19/USA/VA-DCLS-1011/2020
 ATTA1- C241T AAGTCATTT686- C1059T C3037T C4321A C13432T C14408T T17531C C18687T G20980A C22480T A23403G G25563T C29870A

EPI_ISL_527887
 2020-06-02 2020-09-05
 Nigeria hCoV-19/Nigeria/EK291-CV115/2020
 ATTAA1- C241T C3037T T10732G C13536T C14408T A23403G G25471T T27216A GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_528694
 2020-06-02 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/306/2020
 C8782T G11230T T28144C G28167A G28878A C29738T G29742A

EPI_ISL_528695
 2020-06-02 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/310/2020
 T13C C241T C3037T C6543T C11514T C14408T G23311T A23403G G25644T GGG28881AAC

EPI_ISL_528696
 2020-06-02 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/313/2020
 C241T C3037T C3373A C10893T C11195T A14351G C14408T C21614T A23403G G23873T G28580T GGG28881AAC

EPI_ISL_530115
 2020-06-02 2020-09-10
 Spain hCoV-19/Spain/MD-R82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12970T C14408T A20268G A23403G C28333T C29274T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534705 MW000360
 2020-06-02 2020-09-14
 United States SARS-CoV-2/human/USA/MD-MDH-0166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1108T C2695T C3037T C3686T A9259G C14408T C16260T A23403G G25088T G25563T G27506T C28821A AAAAAAAAAA29894-

EPI_ISL_534713 MW000368
 2020-06-02 2020-09-14
 United States SARS-CoV-2/human/USA/MD-MDH-0176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T GTCATGTTA510- C1059T C3037T A6866T A6869T C11669T C13432T C14408T C18687T A20472C G20980A T21144C A23403G C25521T G25563T G29737C

EPI_ISL_534752
 2020-06-02 2020-09-14
 United Kingdom hCoV-19/England/LIVE-A9801/2020
 ATTAAAGGT1- C241T C3037T C8683T C13335T C14408T A20268G A23403G C28854T C29870A

EPI_ISL_535662 MW001886
 2020-06-02 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4684/2020
 C241T C683T C1059T C1218T A2647G G2809T C3037T G11083T C14408T T17687C A23403G G25563T C25886T C29353T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535663 MW001887
 2020-06-02 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4685/2020
 C241T C1288T C3037T C4698T C11575T C14408T G17019T A20268G A23403G G25690T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535664 MW001888
 2020-06-02 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4686/2020
 C241T C1288T C3037T C4698T C11575T C14408T A20268G A23403G G25690T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535665 MW001889
 2020-06-02 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4687/2020
 C241T C2536T C3037T T4324C C7728T C10458T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535667 MW001891
 2020-06-02 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4689/2020
 C241T C2536T C3037T T4324C C7728T C10458T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535668 MW001892
 2020-06-02 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4690/2020
 C241T C2536T C3037T T4324C C7728T C10458T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535670 MW001894
 2020-06-02 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4693/2020
 C241T C3037T C14408T A20268G A23403G G28357T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535671 MW001895
 2020-06-02 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4694/2020
 C241T C2594T C3037T G3971T C4582T C11102T C14408T C15240T C17934T A20268G A23403G G28202A C29013A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_537243
 2020-06-02 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B3090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T T28098C G28380A G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537252
 2020-06-02 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B3081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541338
 2020-06-02 2020-09-22
 United States hCoV-19/USA/FL-BPHL-1245/2020
 ATTA1- C241T C601T C3037T C8389T G12832T C14408T C22687T A23403G G25563T T27438C G27915A A28254- C29025T G29798T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_541399
 2020-06-02 2020-09-22
 Brazil hCoV-19/env/Brazil/RJ-4830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G3689A C8016T G11083T C14408T C18705Y G22028C T22700Y A23403G T27299C C28087T GGG28881AAC T29148C G29648T GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_545356
 2020-06-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-2520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15438T A18818G A23403G G25494T G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545357
 2020-06-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-2521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9907T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545358
 2020-06-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-2522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545368
 2020-06-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-2537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A8254G C10319T C14120T C14408T A23403G G25563T G25907T C27964T C28657T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545383
 2020-06-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-2556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6334C C6429T C14408T A20268G G20487T C21727T A23403G C26534T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545385
 2020-06-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-2558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T T17137C A17869G A23403G G25563T C25584T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545391
 2020-06-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-2566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545394
 2020-06-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-2570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2118A C2459T C3037T C7528T C14408T A23403G G25088T G25563T C28890T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545396
 2020-06-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-2573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C3593T A3933G C14408T C14676T A23403G G25647T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545400
 2020-06-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-2577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A13938G C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545553
 2020-06-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-2788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4931A C8240T C14408T C21034T C23191T A23403G G23873T T25547A G25563T C26895T G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545555
 2020-06-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-2790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1907C C3037T C10015T C14408T G14829T C15654T C23191T A23403G G25563T G26769T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554065
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9594D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096Y C3373A G5150T C14408T C14688T C19118T C19290Y T21670G A23403G C27641T GGG28881AAC G28908T C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554319
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9594E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3784T C14408T C18486T C18877T G22026T C22227T A23403G G25563T C26735T G28079T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558901
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-519D53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A G5150T C14408T C14688T G15406T T21670G A22429G A23403G GGG28881AAC G28908T C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558902
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-52698C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558904
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-51E064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558905
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-524942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558907
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5200E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13458T C14408T T19893C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558908
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-51F5CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2501G C3037T C6395T G10565C A12410G C14408T A18366G C18788T T19839C T21093C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558910
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-520199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13458T C14408T T19893C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558911
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-521C3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A453G C3037T C4391A C14408T C15848T C16084T T19893C A23403G C26625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558917
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5275F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T G11083T C14408T C22477T A23403G T23452C G25563T C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558927
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-526421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G463A C3037T C3373A T3615C C6539T C11442T C13225T C14408T C14688T G15535T C16887T A23403G C27999T GGG28881AAC C29625T T29728C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558930
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-51D751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4396G C6633T C14408T G17443T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558936
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-522935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C344T T383G C3037T C6388T T9139C G10097A C14408T C18828T A23403G C23731T C27999T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558938
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-522328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558941
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-51D5B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3338T C3511T C14408T A22301G A23403G T24136C G29508A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558944
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-51F28B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G5555R G8653T C14408T G20578T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558945
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-521532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G704A C3037T C5051T C9979T C14408T A23403G A24425C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558948
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-51FEF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558954
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5218A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17427K A20268G A23403G T25202K G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558956
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5240D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C186T C241T C3037T T3576C A13712G C14408T C17690T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558960
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-51D645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7675T T8908C C12525T G12793T C14408T C17676T A18522G A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558963
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-526C56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C22088T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558964
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-526FC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C22088T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558968
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5244C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T T15519C C16289T C19572T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558972
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5217D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T C3373A C14408T C14688T A23403G C25714T C26270T G27706T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558982
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-524D73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558984
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-525E9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T20124C G20931A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558992
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-519719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4010T C12870T C14408T A23403G A23446G C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558998
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5279F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14408T G15438T T17011C A20268G A23403G C24026T G25595T G28690T C28866T G29081T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559003
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-522917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T175C C241T C3037T C3373A C14408T A21717T A23403G C28367T GGG28881AAC C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559004
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-519746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C C7768T C14408T A23403G GGG28881AAC G29764T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559006
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5276A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T G11083T C14408T C22477T A23403G T23452C G25563T C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559010
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-521CE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A453G C3037T C4391A C14408T C15848T C16084T T19893C A23403G T25202K C26625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559014
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-519D17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A G5150T C14408T C14688T G15406T T21670G A22429G A23403G GGG28881AAC G28908T C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559015
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-51FF75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559016
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-524E43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3787T A4926C C14408T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559020
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5249BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T A23403G G23868T C28531T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559021
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-526AA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C3817T C14408T A23403G G25429T G25444T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559025
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-521D49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1914A C3037T G4399T C14408T T16456C C18252T A23403G G27746T C28005T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559029
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-51D44B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559030
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-51EF85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A G12211T C14408T C15848T C16551T G17572T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559037
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-51FBAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5339T C14408T G15646A G21624T A23403G T25202K C27970T C28292A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559040
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-523758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C620T C3037T C5581T C13730T C14408T C21575T A23403G G25429T G25500A A28359T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559044
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-525A11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G520T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559051
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-526209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G463A C3037T C3373A T3615C C6539T C11442T C13225T C14408T C14688T G15535T C16887T A23403G C27999T GGG28881AAC C29625T T29728C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559052
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-526E8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T G10097A T10117G G11310T G11521T C13536T C14408T C21622T A23403G C23731T A26115G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559056
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-523020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20931A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559064
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-520032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6525Y C13458T C14408T T19893C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559067
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-524AB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559068
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5246E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559072
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-526B0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C22088T A23403G T25202K A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559073
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5262DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G463A C3037T C3373A T3615C C6539T C11442T C13225T C14408T C14688T G15535T C16887T A23403G C27999T GGG28881AAC C29625T T29728C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559076
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-519CED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T G3259T C6312A A10948G A12075G C14408T A23403G G25552T GGG28881AAC G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559079
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-51D6FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10521K C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559086
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5239BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15894T T19893C A23403G T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559087
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-521EEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A453G C3037T C4391A C14408T C15848T C16084T T19893C A23403G T25202K C26625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559090
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-520C10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19999T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559091
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-522B8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G G25012A G25784T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559093
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-51F546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2902T C3037T C13620T C14408T T15030C A23403G A27027G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559094
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5201F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14408T G15438T A20268G A23403G C24026T G28690T C28866T G29081T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559096
 2020-06-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-527280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C6629T C9803A A10786G C10833T C14408T C18687T A23403G C25844T T27811C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566051
 2020-06-02 2020-10-01
 United Kingdom hCoV-19/England/202322095/2020
 ATTAAAGGTTTATACCT1- C241T C3037T G6563K C14408T C14741A T18299C A21625M C22806M A23403G G25429T G29474T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT648676
 2020-06-02 2020-06-22
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_091/2020
 C241T A1163T C3037T C3961T C12672T C14408T T23101G A23403G G23587T GGG28881AAC T29785C

MT811519
 2020-06-02 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1087-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3033T C3037T C4582T C8175T C14408T G16416C T18352C A20268G C22227T A23403G C28744T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MW023428
 2020-06-02 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1245/2020
 ATTA1- C241T C601T C3037T C8389T G12832T C14408T C22687T A23403G G25563T T27438C G27915A A28254- C29025T G29798T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_467041 MT607609
 2020-06-03 2020-06-12
 India SARS-CoV-2/human/IND/GBRC177a/2020
 C241T C2836T C3037T C14408T C18877T C22444T C23277T A23403G G25563T C26735T C28854T

EPI_ISL_467042 MT607607
 2020-06-03 2020-06-12
 India SARS-CoV-2/human/IND/GBRC177b/2020
 C241T C3037T C3634T C14408T C15324T C22444T A23403G C29762T

EPI_ISL_467043 MT607621
 2020-06-03 2020-06-12
 India SARS-CoV-2/human/IND/GBRC178a/2020
 C241T C3037T C3634T C14408T C15324T A23403G

EPI_ISL_467044 MT607603
 2020-06-03 2020-06-12
 India SARS-CoV-2/human/IND/GBRC178b/2020
 C241T C3037T C3634T C14408T C15324T A23403G C28854T

EPI_ISL_467045 MT607614
 2020-06-03 2020-06-12
 India SARS-CoV-2/human/IND/GBRC179a/2020
 C241T C2836T C3037T T4917C C14408T C18877T C22444T C23277T A23403G G25563T C26735T C28854T

EPI_ISL_467046 MT607604
 2020-06-03 2020-06-12
 India SARS-CoV-2/human/IND/GBRC179b/2020
 C241T C3037T C3634T C14408T C15324T C22444T A23403G

EPI_ISL_467047 MT607606
 2020-06-03 2020-06-12
 India SARS-CoV-2/human/IND/GBRC180a/2020
 C241T C3037T C3634T C14408T C15324T A23403G G29861A

EPI_ISL_467048 MT607620
 2020-06-03 2020-06-12
 India SARS-CoV-2/human/IND/GBRC180b/2020
 C241T C3037T C3634T C14408T C15324T A23403G C28854T G29861A

EPI_ISL_467049 MT607617
 2020-06-03 2020-06-12
 India SARS-CoV-2/human/IND/GBRC181a/2020
 C241T C3037T A9754G C14408T G16078A C18877T C22444T G23311T A23403G G25563T C26228T C26735T C28854T

EPI_ISL_467050 MT607605
 2020-06-03 2020-06-12
 India SARS-CoV-2/human/IND/GBRC181b/2020
 C241T C3037T A9754G C14408T C15324T G16078A C18877T C22444T G23311T A23403G G25563T C26735T C28854T C29769T

EPI_ISL_467051 MT607608
 2020-06-03 2020-06-12
 India SARS-CoV-2/human/IND/GBRC182a/2020
 C241T C3037T C5886T C14408T C15324T G16078A C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_467052 MT607619
 2020-06-03 2020-06-12
 India SARS-CoV-2/human/IND/GBRC182b/2020
 C241T C2836T C3037T C3634T C14408T A23403G

EPI_ISL_467053 MT607611
 2020-06-03 2020-06-12
 India SARS-CoV-2/human/IND/GBRC183a/2020
 C241T C2836T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C27389T G27676A G28337T C28854T

EPI_ISL_467054 MT608648
 2020-06-03 2020-06-12
 India SARS-CoV-2/human/IND/GBRC183b/2020
 C241T C3037T C3634T C14408T C15324T C22444T A23403G G27676A C28854T

EPI_ISL_469025 MT635328
 2020-06-03 2020-06-17
 India SARS-CoV-2/human/IND/GBRC185a/2020
 C241T C3037T C3634T C14408T C15324T A23403G

EPI_ISL_469026 MT635271
 2020-06-03 2020-06-17
 India SARS-CoV-2/human/IND/GBRC185b/2020
 C241T C3037T C3634T C14408T C15324T G20002T A23403G

EPI_ISL_469027 MT635269
 2020-06-03 2020-06-17
 India SARS-CoV-2/human/IND/GBRC186a/2020
 C241T C3037T C3634T C11020T C14408T C15324T G16078A C22444T A23403G

EPI_ISL_469028 MT635272
 2020-06-03 2020-06-17
 India SARS-CoV-2/human/IND/GBRC186b/2020
 C241T C3037T C14408T C17185T T17731C C18877T G23311T A23403G G25563T C26735T C28854T

EPI_ISL_469037 MT635393
 2020-06-03 2020-06-17
 India SARS-CoV-2/human/IND/GBRC193a/2020
 C241T C3037T C4084T C14408T A23403G C29750T

EPI_ISL_469038 MT635392
 2020-06-03 2020-06-17
 India SARS-CoV-2/human/IND/GBRC193b/2020
 C241T A2292C C2836T C3037T G4300T C14408T C18568T C18877T G21724T C22444T A23403G G25563T C26735T C29614T

EPI_ISL_469072
 2020-06-03 2020-06-17
 Sweden hCoV-19/Sweden/20-51891/2020
 C241T C3037T C7011T T13779C C14408T G20995T A23403G C25585T T26957C C27629T GGG28881AAC

EPI_ISL_470750
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_470751
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T G11083T C13665T C14408T A23403G G25563T C27964T C28531T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_470752
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C8318T C10319T C13665T C14408T A23403G G25563T C27964T C28531T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_470753
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_470754
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_470755
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_470756
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470757
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_470758
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_470759
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1079/2020
 ATTAAAGGTTT1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_470760
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27804T C27964T C28531T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470761
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T T29855- GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_470762
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_470763
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1457T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_470764
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T A13962G C14408T A23403G G25563T C27964T C28531T T29856Y GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_470765
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C11653T C13665T C14408T A23403G G25563T C27964T C28531T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_470766
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T G18948T A23403G G25563T C27964T C28531T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_470767
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_470768
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T T19224C A23403G G25563T C27964T C28531T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_470769
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_470770
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470771
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_470772
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_470773
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_470774
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_470775
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_470776
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856C

EPI_ISL_470777
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T CC1059TT C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_470778
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G991T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_470779
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_470780
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_470781
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1101/2020
 ATTA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_470782
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_470783
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_470784
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_470785
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_470786
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1106/2020
 ATTAAAGGTTTATACC1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_470787
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_470788
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T G11083T C13665T C14408T A23403G G25563T C27964T C28531T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_470789
 2020-06-03 2020-06-19
 United States hCoV-19/USA/MN-MDH-1109/2020
 C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_471145
 2020-06-03 2020-06-19
 United States hCoV-19/USA/WI-GMF-05143/2020
 C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T

EPI_ISL_471417
 2020-06-03 2020-06-21
 Romania hCoV-19/Romania/Buzau-292711/2020
 C241T C1938T C3037T C3093T C13862T C14120T C14408T T16456C C21143T A23403G GGG28881AAC

EPI_ISL_471419
 2020-06-03 2020-06-21
 Romania hCoV-19/Romania/Buzau-293197/2020
 C241T C3037T C3093T C13862T C14120T C14408T T16456C A23403G GGG28881AAC

EPI_ISL_471510
 2020-06-03 2020-06-22
 United Kingdom hCoV-19/England/20236092104/2020
 C241T C313T C3037T C6539Y C11379Y C14408T C17746T A23403G A25472T C25904T G27358T G28086T GGG28881AAC C29750T

EPI_ISL_471513
 2020-06-03 2020-06-22
 United Kingdom hCoV-19/England/20238034404/2020
 C8782T T18488C ATTCTCCTCGGCGGGCACGTAGTG23598- T28144C A29596G

EPI_ISL_471517
 2020-06-03 2020-06-22
 United Kingdom hCoV-19/England/20239016504/2020
 C241T C1201T C2523T C3037T C10448Y C14408T T21802C A23403G GGG28881AAC

EPI_ISL_471979
 2020-06-03 2020-06-23
 United Kingdom hCoV-19/England/EXET-1375F1/2020
 T630G C5175T C8782T T9477A A13187G C14599T C14805T A16438G C16779T A25841G G25979T T28144C C28657T C28863T G29705T

EPI_ISL_472093
 2020-06-03 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A01B4/2020
 C241T C3037T C6336T C8683T C13335T C14408T A20268G A23403G G26173T C28854T

EPI_ISL_472101
 2020-06-03 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A02FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C106T C241T C3037T C14408T G17122T TTTGGGTGTTTA21982- A23403G GGG28881AAC C29870A

EPI_ISL_472132
 2020-06-03 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A0758/2020
 C241T C835T C1915T C3037T G6476T C8140T G10097A G11083T T13216G C14408T C18606T A23403G C23731T T25530C GGG28881AAC

EPI_ISL_472385
 2020-06-03 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111C16/2020
 C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T

EPI_ISL_472386
 2020-06-03 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111C25/2020
 G105T G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_472390
 2020-06-03 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111C61/2020
 C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC

EPI_ISL_473436
 2020-06-03 2020-06-23
 United Kingdom hCoV-19/England/BIRM-61182/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_473438
 2020-06-03 2020-06-23
 United Kingdom hCoV-19/England/BIRM-611BF/2020
 C241T C3037T G10097A C10202T C14408T C22000T A23403G C23731T C27538A G28580T G28803A GGG28881AAC

EPI_ISL_473474
 2020-06-03 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B44E0/2020
 C241T A2554G C2650T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C25624T GGG28881AAC

EPI_ISL_473482
 2020-06-03 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B477E/2020
 C241T C3037T G5411T G6669T C9430T C9491T C14408T C19017T G22992A A23403G C26270T C27630T C27641T G28396T GGG28881AAC

EPI_ISL_473483
 2020-06-03 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B479C/2020
 C241T A2554G C2650T C3037T C4002T G10097A C13536T C14408T G19677C A23403G C23731T GGG28881AAC

EPI_ISL_473933
 2020-06-03 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6259/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G

EPI_ISL_475530
 2020-06-03 2020-06-23
 Sweden hCoV-19/Sweden/20-51829/2020
 C241T C1059T C1288T C3037T C14408T C16111T G20134T A23403G G24368T G25563T

EPI_ISL_476763
 2020-06-03 2020-06-25
 United States hCoV-19/USA/MN-MDH-1178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_476764
 2020-06-03 2020-06-25
 United States hCoV-19/USA/MN-MDH-1179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_476765
 2020-06-03 2020-06-25
 United States hCoV-19/USA/MN-MDH-1180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T G22244T A23403G G24293A G25563T C27964T C28531T C29520T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_476766
 2020-06-03 2020-06-25
 United States hCoV-19/USA/MN-MDH-1181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862C

EPI_ISL_477311
 2020-06-03 2020-06-29
 United States hCoV-19/USA/MN-MDH-1222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C11750T C14408T C15324T C16260T C21575T A23403G G25563T C28821A TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_477312
 2020-06-03 2020-06-29
 United States hCoV-19/USA/MN-MDH-1223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C11750T C14408T C15324T C16260T C21575T A23403G G25563T G26795T C28821A TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_478272
 2020-06-03 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T967C G970A C3037T C14408T A20268G TTTGGGTGTTTA21982- G22225T A23403G T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478315
 2020-06-03 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D69B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478316
 2020-06-03 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D69C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2065T C3037T C6026T C8645T G10097A C14408T C14605T G17721T C18032T C21614T TTA21991- A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478317
 2020-06-03 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D69D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478320
 2020-06-03 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6A29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479242
 2020-06-03 2020-06-30
 United Kingdom hCoV-19/England/SHEF-CA71C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480662 MT745646
 2020-06-03 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C16163Y A23063T A23403G T28196C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_481160
 2020-06-03 2020-07-02
 India hCoV-19/India/ILSCV32652/2020
 C241T C3037T C14178T C14408T A23403G C28854T TTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29728-

EPI_ISL_483662
 2020-06-03 2020-07-08
 Switzerland hCoV-19/Switzerland/150034_428_A09_plus/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C815Y C2147T C3037T A3406R C13968Y C14408T G15958T T17675Y G22014T A23403G C26456Y C26801T GGG28881AAC T28981C G29260T G29736T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483663
 2020-06-03 2020-07-08
 Switzerland hCoV-19/Switzerland/150035_428_B09_plus/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2147Y C3037T A3406R T3477Y C3717Y G4505R C7299Y C13968Y C14408T G15287K C15324Y G15958K G17915R T18495Y C18877Y A20268R G22014K A23403G A24123R T24572Y C25207Y C25521Y G25563K T25717K C25886Y C26801Y T28135Y G28300R C28854Y G29032K G29260K G29736K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483664
 2020-06-03 2020-07-08
 Switzerland hCoV-19/Switzerland/150036_428_D09_plus/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2919Y C3037T C6500T G6899K T7813C C14408T T18471C C18526T T22391C A23403G C28139T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_484875 MT750083
 2020-06-03 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T A23403G G25563T C29668T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484877 MT750084
 2020-06-03 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G509A C1059T C3037T C6449T C14408T C14491T G18612T G22706T C23271T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486117 MT750333
 2020-06-03 2020-07-10
 United States SARS-CoV-2/human/USA/CA-CZB-1783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C320S G347A C3037T C14408T G18149T A20268G A22904M A23122R A23403G T24076C T25902W T25908W G25913S C28854T AA29902-

EPI_ISL_488179
 2020-06-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-292FAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C2306T C3037T C9636T A14061G C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488180
 2020-06-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-292F9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1687T C2306T C3037T G3880T A14061G C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488181
 2020-06-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-292F22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6659G A9553G G10097A C14408T G16696A C18131T A23403G C23731T C25714T C25771T C27739T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488183
 2020-06-03 2020-07-14
 United Kingdom hCoV-19/England/NORT-292EF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488870
 2020-06-03 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C8619T C14408T C18877T A23403G G25563T C26753T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489720 MT757119
 2020-06-03 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0311/2020
 ATTAA1- C241T C3037T C14408T A15099G C18877T A23403G T25557G G25563T C25904T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_489722 MT757121
 2020-06-03 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0313/2020
 AT1- C241T C3037T C14408T A16395T C18647T A23403G C25916T T27299C GGG28881AAC T29148C G29427T C29769T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_489723 MT757122
 2020-06-03 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0314/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T C25904T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_489724 MT757123
 2020-06-03 2020-07-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0315/2020
 A1- C241T C3037T C14408T C18877T A23403G G25563T C25904T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_491238
 2020-06-03 2020-07-16
 Portugal hCoV-19/Portugal/IGC4234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C180T C241T C3037T C14408T A23403G C25046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491242
 2020-06-03 2020-07-16
 Portugal hCoV-19/Portugal/IGC4251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491297
 2020-06-03 2020-07-16
 Portugal hCoV-19/Portugal/R998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C G22317A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492014
 2020-06-03 2020-07-18
 Oman hCoV-19/Oman/205041214/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1519T C3037T G10265A C14408T C16293T A23403G C25452T GGG28881AAC GAGA29862TGCT TG29867CA AAAAAA29871TTCCTC AA29879GG AAAAAAAAAAAAAAAAAAAAA29883C

EPI_ISL_496242 MT834317
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1816/2020
 ATTAAAGGTTT1- C241T A2161G C3037T C5758T C14408T C16376T T18453C C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496248 MT834002
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1822/2020
 ATTAAAG1- C241T C3037T C14408T C15933T G16968T T19839C A20055G C21859T A23403G G25691T C28737T GGG28881AAC T29765C C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_496917
 2020-06-03 2020-07-24
 United States hCoV-19/USA/MN-MDH-1331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T T11098C C13665T C14408T A23403G G25563T C27964T C28531T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_497341 MT831401
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/CA-S1920/2020
 ATTAAAGGTTTAT1- C1063T G2782T C3037T C4999T A8596G C14408T C18086T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497350 MT831459
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1922/2020
 ATTAAAGGTTTATA1- C3037T C12528A C14408T C18086T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497351 MT831456
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1923/2020
 ATTAAAGGTTTAT1- G2782T C3037T C4999T C14408T C18086T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497352 MT831207
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1924/2020
 AT1- CG241TT C1063T G2782T C3037T C4999T A8596G C14408T C18086T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497354 MT831387
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15933T G16968T T19839C A21215G A23403G GGG28881AAC G29260T C29784T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_497356 MT831432
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1928/2020
 ATTAAAGGTTT1- C241T C3037T C6445T C14216T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497358 MT831299
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1930/2020
 AT1- C241T C3037T C14408T C15933T G16968T C17304T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497359 MT831455
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1931/2020
 AT1- C241T A2161G C3037T C5758T C14408T C16376T T18453C C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497360 MT831275
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1932/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497361 MT831263
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1933/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A21215G A23403G GGG28881AAC G29260T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497362 MT831360
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1934/2020
 ATT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497363 MT831389
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1935/2020
 ATTAAAGGTTT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497364 MT831372
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1936/2020
 ATT1- C241T C3037T C14408T C15933T G16968T C17304T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497366 MT831205
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1938/2020
 A1- C241T A2161G C3037T G5180A C5758T C14408T C16376T C16490T T18453C C18877T A23403G G23675T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497367 MT831386
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1939/2020
 ATTAAAGGTTTATA1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497369 MT831238
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1941/2020
 AT1- C241T G2144T C3037T C3768T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497376 MT831280
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1948/2020
 ATTAAAG1- C241T C3037T C14408T G15260T C15933T G16968T T19839C A23403G G26428T C27213T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497377 MT831345
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1949/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C26645T G28080A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497378 MT831124
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1950/2020
 ATTAAAGGTTTAT1- C241T C1060T C3037T C14408T C18680T T19839C A21845G A23403G C25614T A28100G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497380 MT831309
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1952/2020
 AT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497381 MT831395
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1953/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T C16954T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497382 MT831479
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1954/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T A23403G G25563T C27804T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497385 MT831312
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1957/2020
 ATTAAAGGTTTATA1- C241T C2508T C3037T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497386 MT831469
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1958/2020
 AT1- G354A C2070T C8782T C17747T A17858G C18060T A26566G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497388
 2020-06-03 2020-07-24
 United States hCoV-19/USA/WA-S1960/2020
 C241T C3037T C14408T C15933T G16968T C19688T T19839C A23403G G27676T G28851T GGG28881AAC G29764T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497389 MT831264
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1961/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497390 MT831214
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1962/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497391 MT831363
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1963/2020
 ATTAAAGGTTT1- C241T C3037T C3768T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497392 MT831183
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1964/2020
 AT1- C241T C3037T G8075A A12199G C13568T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497393 MT831209
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1965/2020
 AT1- CG241TT C3037T C5020T C12897T C14408T C18086T T19839C C20970T A23403G C27371T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497394 MT831166
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1966/2020
 AT1- C241T C1722T C3037T G8075A G10996T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497395 MT831227
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1967/2020
 ATT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G G28003C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497396 MT831186
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1968/2020
 ATT1- C241T C3037T A6520G C13860T C14408T C15933T G16968T T19839C A23403G G28048T GGG28881AAC C29119T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497397 MT831277
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1969/2020
 ATTAAAGGTT1- C241T C3037T A6520G C13860T C14408T C15933T G16968T T19839C A23403G G28048T GGG28881AAC C29119T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497398
 2020-06-03 2020-07-24
 United States hCoV-19/USA/WA-S1970/2020
 ATTAAAGGTTTAT1- C241T C3037T A3538G C14408T C15933T G16968T C19688T T19839C A23403G G27676T G28851T GGG28881AAC G29764T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497399 MT831175
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1971/2020
 AT1- C241T C3037T C7973T C14408T C15933T G16968T A17406G G18985T T19839C C21727T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497400 MT831293
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1972/2020
 AT1- C241T C3037T C3768T C14408T C15933T G16968T T19839C G20274T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497401 MT831296
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1973/2020
 A1- C241T C1204T G1747A C3037T C5643T C14408T C16289T C18570T A23403G G25429T C26527T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_497402 MT831236
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1974/2020
 ATT1- C241T C3037T C10815T C14408T C15933T G16968T T19839C A23403G G25445T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497403 MT831321
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1975/2020
 A1- C241T C3037T C14408T C15933T G16968T C19019T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497404 MT831370
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1976/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497405 MT831313
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1977/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497406
 2020-06-03 2020-07-24
 United States hCoV-19/USA/WA-S1978/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497408 MT831181
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1980/2020
 AT1- C241T C3037T C14408T G15260T C15933T G16968T T19839C A23403G G26428T C27213T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497409 MT831139
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1981/2020
 AT1- C241T C3037T T8559A G8561A T10190C C10507T C14408T C19145T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497430 MT831467
 2020-06-03 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2002/2020
 AT1- G1401A C8782T C17747T A17858G C18060T T28144C T28582C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_498791
 2020-06-03 2020-07-28
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_323/2020
 C241T A916G A1163T G1730A C3037T C14408T A23403G GGG28881AAC C29733T

EPI_ISL_498792
 2020-06-03 2020-07-28
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_326/2020
 C241T A1163T C3037T C14408T A19464G A23403G C28310T GGG28881AAC

EPI_ISL_498793 MT846004
 2020-06-03 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_327/2020
 C241T C1426T C3037T C14408T C19524T C20148T A23403G GGG28881AAC C29118T

EPI_ISL_498794 MT846005
 2020-06-03 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_328/2020
 C241T A1163T C3037T C3045T G3606T C14408T G21974T A23403G A26528G GGG28881AAC

EPI_ISL_498795 MT846006
 2020-06-03 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_329/2020
 C241T A1163T G2782T C3037T C5869T A8537G C14408T A23403G C27600T G28178T GGG28881AAC AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_504182 MT847210
 2020-06-03 2020-08-01
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_330/2020
 C241T A1163T C3037T C11497T C14408T G19891T T20609C A23403G G25538T C26642A G27201A C27612T G28223T GGG28881AAC G29402T

EPI_ISL_508195
 2020-06-03 2020-08-04
 India hCoV-19/India/AR59/2020
 ATTAAAGGTTTATACCTTC1- C241T T1947C C3037T C14408T C17036T C18877T C22444T A23403G G25563T A26459T C26735T C26882T TTA27698- C28854T G29868A

EPI_ISL_508310
 2020-06-03 2020-08-04
 India hCoV-19/India/IB31/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508325
 2020-06-03 2020-08-04
 India hCoV-19/India/IB47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- A1846G C6312A G11083T C13730T T16732G C23929T C28311T G29868A

EPI_ISL_508327
 2020-06-03 2020-08-04
 India hCoV-19/India/IB5/2020
 ATTAAAGGTTTATACCTTCCCAG1- C28- C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508330
 2020-06-03 2020-08-04
 India hCoV-19/India/IB53/2020
 ATTAAAGGTTTATACCTTCCCAG1- C28G C241T C3037T A4584G C10525T C14408T A23403G G24697T G29868A

EPI_ISL_508483
 2020-06-03 2020-08-04
 India hCoV-19/India/S94/2020
 AT1- C241T A1350T C3037T G7873A C14408T A23403G G29868A

EPI_ISL_509378
 2020-06-03 2020-08-05
 Singapore hCoV-19/Singapore/768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4893T C6310A C6312A G11083T A11228G C13730T C19524T C23185T C23929T A24915T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510058
 2020-06-03 2020-08-06
 Spain hCoV-19/Spain/AN-004121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T G4255A G10444T C14408T G15202T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_511814
 2020-06-03 2020-08-08
 United States hCoV-19/USA/CA-IGI-0059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C850T C1059T C2668T C3037T C14408T C21156T A23403G G25563T T28009C

EPI_ISL_513114
 2020-06-03 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1110/2020
 C241T T617C C14408T C18877T G25563T C26735T

EPI_ISL_513115
 2020-06-03 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1111/2020
 C241T C3037T T3694C C14408T C22444T G25563T C26735T G27996T

EPI_ISL_514813
 2020-06-03 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2410/2020
 C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514814
 2020-06-03 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2411/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G7936T C11916T C14408T C16650T A20675T G21468T A23403G G25563T G27703T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_514815
 2020-06-03 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2412/2020
 ATTAAAGGT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G21468T C22687T A23403G G25563T G27703T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_514816
 2020-06-03 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2413/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514818
 2020-06-03 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2415/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514819
 2020-06-03 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2416/2020
 ATTAAAGGTTTA1- C241T C560T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_514820
 2020-06-03 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2417/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514822
 2020-06-03 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2419/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T G18412T A20675T A23403G G25456T G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_514823
 2020-06-03 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2420/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T G15372T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_514824
 2020-06-03 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2421/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_516890
 2020-06-03 2020-08-24
 Israel hCoV-19/Israel/CVL-n17925/2020
 C241T C683T C1059T C3037T T3547C C5144T C6402T G8572T G11083T C14408T G17427T A23403G G25563T G25690T G29449T A29865G

EPI_ISL_516891
 2020-06-03 2020-08-24
 Israel hCoV-19/Israel/CVL-n17953/2020
 T175C C241T C1059T C3037T C11916T C14408T C18998T G21225T C21304A A23403G G25563T T25887C G26217T G29540A A29752T

EPI_ISL_520678
 2020-06-03 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L2006030255/2020
 C884T G1397A G8653T G11083T A19073G G27915T T28688C C28868T C29077T G29742T

EPI_ISL_522398 MT946886
 2020-06-03 2020-08-25
 United States SARS-CoV-2/human/USA/AK-PHL414/2020
 ATTAAAGGTTT1- C241T C2143T C3037T C14408T A20268G A23403G G26062T C29119T C29370G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_523119
 2020-06-03 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-9-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C14408T G21578T A23403G G25563T C26078T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523120
 2020-06-03 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-9-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C14408T C22663G A23403G G24386T G25563T C26078T GGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29527-

EPI_ISL_523127
 2020-06-03 2020-08-26
 Netherlands hCoV-19/Netherlands/DR-EMC-9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12733T C14408T G20060T C21621T A23403G G28090T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523176
 2020-06-03 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523282
 2020-06-03 2020-08-26
 Netherlands hCoV-19/Netherlands/LI-EMC-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G G14274A C14408T G17193A A23403G A24862G T26047G C26645T G27967T G29779T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523283
 2020-06-03 2020-08-26
 Netherlands hCoV-19/Netherlands/LI-EMC-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G G14274A C14408T G17193A A23403G A24862G T26047G C26645T G29779T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523284
 2020-06-03 2020-08-26
 Netherlands hCoV-19/Netherlands/LI-EMC-79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T G2447A C3037T A4967G G11083T G14274A C14408T G17193A A23403G A24862G T26047G C26645T G29779T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523285
 2020-06-03 2020-08-26
 Netherlands hCoV-19/Netherlands/LI-EMC-80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G T5028A G14274A C14408T G17193A A23403G A24862G T26047G C26645T G29779T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523286
 2020-06-03 2020-08-26
 Netherlands hCoV-19/Netherlands/LI-EMC-81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G G14274A C14408T G17193A A23403G A24862G T26047G C26645T G29779T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523532
 2020-06-03 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6027T T10561C C14408T C15324T A23403G C28201T C28844T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_524024
 2020-06-03 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-19422V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T G4216A C5298T C14408T A23403G GGG28881AAC GACAA29868-

EPI_ISL_524025
 2020-06-03 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-19426V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T A3999G G4476A C5284T C14408T T17694C A23403G GGG28881AAC GA29868-

EPI_ISL_524026
 2020-06-03 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-19578V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T T11638C C14220T C14408T C16848A T19331G A23403G GGG28881AAC C28969T G29254T G29422A A29558G C29708T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524027
 2020-06-03 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-19602V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C12119T C14408T A23403G G24959T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524028
 2020-06-03 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-19652V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T T9013A C14408T A23403G G27415T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524449
 2020-06-03 2020-08-28
 Singapore hCoV-19/Singapore/786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1558G C3261T GC6309AA C6312A T8566C G11083T C13730T C19524T C23929T C28311T G29715A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526903
 2020-06-03 2020-09-02
 United States hCoV-19/USA/VA-DCLS-1009/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T C16260T A23403G G25563T G26439T G26690T C28744T C28821A

EPI_ISL_526906
 2020-06-03 2020-09-02
 United States hCoV-19/USA/VA-DCLS-1016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1684T C3037T C14408T A19302W A23403G C24034T G25429A G25563T C29870A

EPI_ISL_526907
 2020-06-03 2020-09-02
 United States hCoV-19/USA/VA-DCLS-1017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C6384T T9172C T10049C A10948G C14408T T16993C C18138T A23403G C23481T G26730T C27673T C28253T C28312T GGG28881AAC

EPI_ISL_526914
 2020-06-03 2020-09-02
 United States hCoV-19/USA/VA-DCLS-1025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T AAAATT6518- C14408T C16575T A23403G G25538A G25563T G29449T C29870A

EPI_ISL_526915
 2020-06-03 2020-09-02
 United States hCoV-19/USA/VA-DCLS-1027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T1675C C1912T C3037T C10313T C14408T A23403G C23833T G25563T C28887T C29870A

EPI_ISL_526918
 2020-06-03 2020-09-02
 United States hCoV-19/USA/VA-DCLS-1033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G260A C3037T A6657C C14408T C17104T C18877T A23403G C24358T C25276T G25563T G28851T

EPI_ISL_526919
 2020-06-03 2020-09-02
 United States hCoV-19/USA/VA-DCLS-1034/2020
 AT1- C241T C1059T C3037T C9430T C14408T C14925T C16946T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_526920
 2020-06-03 2020-09-02
 United States hCoV-19/USA/VA-DCLS-1035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T G5230T C14408T A23403G G25563T C26151T T26302C T27242C G29810T C29870A

EPI_ISL_526923
 2020-06-03 2020-09-02
 United States hCoV-19/USA/VA-DCLS-1039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C4113T C10449T C11916T C14408T C15588T C18998T A23403G G25563T G29540A C29870A

EPI_ISL_526924
 2020-06-03 2020-09-02
 United States hCoV-19/USA/VA-DCLS-1040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T AAAATT6518- C14408T C16575T A23403G G25538A G25563T G29449T C29870A

EPI_ISL_526925
 2020-06-03 2020-09-02
 United States hCoV-19/USA/VA-DCLS-1041/2020
 ATTA1- C241T C1059T C3037T G3431T C14408T A23403G G25563T G26730A ACAGTGA29761- TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_527888
 2020-06-03 2020-09-05
 Nigeria hCoV-19/Nigeria/ON595-CV121/2020
 ATTAAA1- C241T C3037T G3638A G6373T C10908T G12057T C14408T A23403G C25614T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_528708
 2020-06-03 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/C2-109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCT1- G881T A6391G C8782T G11230T C11669T T27580C T28144C G28167A C28833T G28878A G29742A TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_530116
 2020-06-03 2020-09-10
 Spain hCoV-19/Spain/MD-R84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2005T A2430C C3037T C14408T A23403G G25595T GGG28881AAC ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530176 MT997698
 2020-06-03 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T C8660T C10319T C13665T C14408T A23403G G25563T C27964T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_530177 MT997699
 2020-06-03 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1581/2020
 ATTA1- C241T C1059T C1150T C1812T C3037T C6026T C10319T C13665T C14408T A23403G G25563T C27964T C28531T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_530178 MT997700
 2020-06-03 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G1463A C3037T G7557A C8818T C14408T C18377T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_534706 MW000361
 2020-06-03 2020-09-14
 United States SARS-CoV-2/human/USA/MD-MDH-0169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C32G C241T C1059T C3037T G11221A C14408T C16260T C20930T A23403G G25563T C28821A A29887C A29900C

EPI_ISL_534708 MW000363
 2020-06-03 2020-09-14
 United States SARS-CoV-2/human/USA/MD-MDH-0171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C13487T C14408T C16260T C19488T A23403G G25563T G26690T G26834T C28821A T29859A G29862A

EPI_ISL_534709 MW000364
 2020-06-03 2020-09-14
 United States SARS-CoV-2/human/USA/MD-MDH-0172/2020
 ATTAAAGGTT1- C241T C1059T C3037T C5850T C14408T C14599T C16260T A23403G G25563T G25720T G26428T C28821A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_534711 MW000366
 2020-06-03 2020-09-14
 United States SARS-CoV-2/human/USA/MD-MDH-0174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T TTA516- C3037T T6979A C7164T G7643A G8851A T11290A C14408T A23403G A25505C G28557T GGG28881AAC C29870A

EPI_ISL_535666 MW001890
 2020-06-03 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4688/2020
 C241T C3037T C8092T C14408T A20268G C23248T A23403G C28854T C28887T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535669 MW001893
 2020-06-03 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4691/2020
 C241T C3037T A10323R C14408T A20268G C23086T A23403G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535672 MW001896
 2020-06-03 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4695/2020
 C241T C3037T C7267T G11605T C14408T A20268G A23403G T24076C G28109T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535673 MW001897
 2020-06-03 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4696/2020
 C241T A1308C C2594T C3037T C4582T G6352T C11102T C14408T A20268G A23403G A29369G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_537226
 2020-06-03 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B30BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7675T T8908C C14408T T16314Y A23403G C23683T C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537525
 2020-06-03 2020-09-16
 United States hCoV-19/USA/CA-UCLA-219/2020
 A1- C241T C3037T C12488T C14408T A23403G C25528T G27084A GGG28881AAC GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_537564
 2020-06-03 2020-09-16
 United States hCoV-19/USA/CA-UCLA-31/2020
 A1- T221C C241T C3037T C14408T A20268G A23403G C28854T GATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29751-

EPI_ISL_537565
 2020-06-03 2020-09-16
 United States hCoV-19/USA/CA-UCLA-32/2020
 A1- G116A C241T C1059T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_541164
 2020-06-03 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1241/2020
 A1- C241T C3037T C9808T C14408T C18877T C22082T A23403G G25563T G27915T G28396T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_544928
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-5642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T C2445T C3037T G12052T C14408T C19524T T21640C A23403G GGG28881AAC G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545354
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4090T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545359
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12781T C14408T C23191T A23403G G25563T G28242T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545360
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2324A A2969G C3037T C13274T C14408T C17104T A23403G G25563T G26389T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545362
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C311T C829T C1059T C3037T A13938G C15024T C15037T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545369
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61A C241T C1059T G1980A C3037T C6113A C8814T C14408T G16979T A23403G C25509T G25563T C27964T C29741T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545372
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7321T C10319T C11575T C14408T A18468C A20262G G21305A A23403G G25563T C27964T C28868T G29764A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545387
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C3037T G11083T G13348T C14408T A23403G G28179C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545388
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9096T A13938G C14408T C23191T A23403G G25217T G25563T C25904T G27708A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545389
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12781T C14408T G19851T G22616T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545390
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3671A C8099T C9967T C14408T C17004T C21846T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545393
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T T11134C C14408T G14557T A18535G C19011T A23403G G25819A C26681T T27499C G28378T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545432
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C335T C3037T G12188A C14408T C16017T A23403G C24718A T27212C G27561T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545441
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C25844T G25907T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545445
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A A2568G C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545453
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A A2568G C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545454
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3122T C4795A T5755C T9172C A10948G C14408T G17302T A23403G C25904T A26612T G26730T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545468
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1150T C3037T C10319T C14408T C14786T G17019T C17977T G18756A A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545540
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5713A A11781G C14408T C20368T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545541
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T9160C C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545543
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545545
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5840C C14408T C16260T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545546
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545548
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T G28371T G28375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545550
 2020-06-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-2780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A C14408T C18687T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559470
 2020-06-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A4204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877R T11798Y C14408T C16289Y C21646Y A23403G G25429K GGG28881RRS CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559475
 2020-06-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A4574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21646T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559505
 2020-06-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A44A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21646T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559530
 2020-06-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A44E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2129R C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559550
 2020-06-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-497F2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3334A C6312A A6375G A10948G C11095T C14408T A23403G G24926T C25665T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559562
 2020-06-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A437A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C18807T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559563
 2020-06-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A4213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C18807T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559595
 2020-06-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-497DE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559639
 2020-06-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A3D7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6324G A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559647
 2020-06-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-497D12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3334A C6312A A6375G A10948G C14408T A23403G G24926T C25665T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560354
 2020-06-03 2020-09-29
 United States hCoV-19/USA/NM-UNM-00599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1305G C3037T C6690T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560405
 2020-06-03 2020-09-29
 Lithuania hCoV-19/Lithuania/C20-06-R20/2020
 C241T C1593T C3037T C14408T G21624T A23403G C27476T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

MT856459
 2020-06-03 2020-08-07
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_326/2020
 C241T A1163T C3037T C14408T A19464G A23403G C28310T GGG28881AAC

MW023424
 2020-06-03 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1241/2020
 A1- C241T C3037T C9808T C14408T C18877T C22082T A23403G G25563T G27915T G28396T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_467524
 2020-06-04 2020-06-14
 South Africa hCoV-19/South Africa/KRISP-0174/2020
 A1- C241T C3037T C14408T C16376T A23403G C24034T G28628T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471420
 2020-06-04 2020-06-21
 Romania hCoV-19/Romania/Bucuresti-293034/2020
 C241T C1059T G1599T C3037T C8016T C11563T C14408T A23403G G23792A C24700T G25563T

EPI_ISL_471423
 2020-06-04 2020-06-21
 Romania hCoV-19/Romania/Buzau-292638/2020
 C241T C1288T C3037T C8097T C14408T A23403G G25429T C25916T C28854T

EPI_ISL_472392
 2020-06-04 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111C8F/2020
 G199T C241T A2526C C3037T C10440T C13378T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_473090
 2020-06-04 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-162584/2020
 C241T A489G C3037T T5465C G6387A C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC

EPI_ISL_473105
 2020-06-04 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1626BE/2020
 AT1- C815T C2065Y C3037T C9438T T11329Y C11653Y C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_473119
 2020-06-04 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1627AC/2020
 C241T C2459Y C3037T C9438T C14408T A23403G GGG28881AAC G29777T

EPI_ISL_473139
 2020-06-04 2020-06-23
 United Kingdom hCoV-19/Wales/PHWC-1628F4/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C17491T G21624T A23403G GGG28881AAC

EPI_ISL_473481
 2020-06-04 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B4732/2020
 C241T C3037T C14408T A15033G A23403G GGG28881AAC

EPI_ISL_473487
 2020-06-04 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B493C/2020
 C241T G2075A C3037T C14408T G16197T C19547T G19635A A23403G GGG28881AAC

EPI_ISL_473488
 2020-06-04 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B494B/2020
 C241T C3037T C4002T A6604G G10097A C11109T C13536T C14408T A20276G A23403G C23731T C27059T GGG28881AAC

EPI_ISL_473489
 2020-06-04 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B495A/2020
 C218T C241T C3037T T10810C G11291A C14408T T15207A T17835C T21195C C21855T A23403G C24802T T24982C C25710T C28236T

EPI_ISL_473490
 2020-06-04 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B4969/2020
 C218T C241T C3037T T10810C G11291A C11407T C14408T T15207A T17835C C21855T A23403G T24982C C25710T C28236T

EPI_ISL_473932
 2020-06-04 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6254/2020
 C241T C3037T C14408T A20268G C21998T A23403G ACTTTG25432- A28390G G29315T

EPI_ISL_473939
 2020-06-04 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6329/2020
 C241T TGGTCATGTTATGGT508- T1576C C3037T G13249T C14408T G15906T A20268G A23403G G25298A C25844T C28854T

EPI_ISL_473940
 2020-06-04 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6333/2020
 C241T C3037T C6472T C7815T C13684T C14408T A20268G A23403G

EPI_ISL_473942
 2020-06-04 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6336/2020
 C241T TGGTCATGTTATGGT508- T1576C C3037T C9166T G13249T C14408T G15906T A20268G A23403G G25298A C25844T C28854T

EPI_ISL_473944
 2020-06-04 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6346/2020
 C241T TGGTCATGTTATGGT508- T1576C C3037T G13249T C14408T G15906T A20268G A23403G G25298A C25844T C28854T

EPI_ISL_475533
 2020-06-04 2020-06-23
 Sweden hCoV-19/Sweden/20-51900/2020
 C241T C1059T C3037T C14408T A17073G A23403G G24368T G25563T G28975T

EPI_ISL_475534
 2020-06-04 2020-06-23
 Sweden hCoV-19/Sweden/20-51902/2020
 C241T C1059T C3037T C14408T A17073G A23403G G24368T G25563T G28975T

EPI_ISL_478157
 2020-06-04 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C556T C3037T C14408T C15324T A16882G G19542T G20679A A23403G T27576G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478375
 2020-06-04 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A00D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T C12005T C14408T A15111G C17747T A23403G -28029TA GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481163
 2020-06-04 2020-07-02
 India hCoV-19/India/ILSCV32814/2020
 C241T C313T G1946T C3037T C5700A C14408T G21800T A23403G G23426T A24694T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481164
 2020-06-04 2020-07-02
 India hCoV-19/India/ILSCV32815/2020
 C241T C313T G1946T C3037T C5700A C14408T G21800T A23403G G23426T A24694T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481165
 2020-06-04 2020-07-02
 India hCoV-19/India/ILSCV32816/2020
 C241T C313T G1946T C3037T C5700A C14408T G21800T A23403G G23426T A24694T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481166
 2020-06-04 2020-07-02
 India hCoV-19/India/ILSCV32817/2020
 C241T C313T G1946T C3037T C5700A C14408T A23403G G23426T A24694T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_481167
 2020-06-04 2020-07-02
 India hCoV-19/India/ILSCV32866/2020
 C241T C3037T G11417T C14408T A23403G C27625T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481168
 2020-06-04 2020-07-02
 India hCoV-19/India/ILSCV32870/2020
 C241T C3037T C8917T G9389A C11003T C14408T A23403G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_481169
 2020-06-04 2020-07-02
 India hCoV-19/India/ILSCV32872/2020
 C241T C3037T C8917T G9389A C11003T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481985
 2020-06-04 2020-07-03
 United Kingdom hCoV-19/England/BRIS-12DF1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5312T A5452G C14408T C21846T A23403G G25563T G27852T G28337A G28378T AGGCCACGCGGAGT29735- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482711
 2020-06-04 2020-07-05
 South Africa hCoV-19/SouthAfrica/KRISP-0192/2020
 C241T C3037T C14408T C16376T A23403G C24034T G28628T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_483660
 2020-06-04 2020-07-08
 Switzerland hCoV-19/Switzerland/150027_423_F02_plus/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C7299T C14408T T18495Y C18877T A23403G C25207T C25521T G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483661
 2020-06-04 2020-07-08
 Switzerland hCoV-19/Switzerland/150029_425_D03_plus/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2147T A2905W C3037T T3144W A3534W G3548R T6893Y T6959Y T7014Y C13968Y C14408T G15958T A23403G C26801T GGG28881AAC T28981C G29260T A29426G G29736T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_484516
 2020-06-04 2020-07-08
 United Kingdom hCoV-19/England/SHEF-D1AEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484673
 2020-06-04 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR3888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A363G C2146T C3037T G5196K C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484863 MT750071
 2020-06-04 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6627T C11379T C14408T T15354C C18877T A23403G G25563T C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484865 MT750073
 2020-06-04 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487261
 2020-06-04 2020-07-13
 United States hCoV-19/USA/UT-05782/2020
 C241T C959T C1059T C3037T G10947A C14408T G14857T C15352T C18929T C21364T A23403G C24378T G25563T TTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACAC27701- C27964T C29095T

EPI_ISL_488184
 2020-06-04 2020-07-14
 United Kingdom hCoV-19/England/NORT-292FE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T C25714T C25771T C27739T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489842 EPI_ISL_491038
 2020-06-04 2020-07-14
 Romania hCoV-19/Romania/ROSV_11967/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G1439T C3037T T9697C T10495C G10618A A12875G C14322T C14408T T17137C A20268G A23403G A29827T G29830T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_490827
 2020-06-04 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-166025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8944C C14408T G14511T C14741T A23403G AAAAAAAAAAAA29892-

EPI_ISL_490848
 2020-06-04 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-1661D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T5573C C6380T G11801A C14408T T18768C T19839C C20189T A21651C A23403G G24586T G25552T GGG28881AAC G28979T T29607C A29903-

EPI_ISL_492016
 2020-06-04 2020-07-18
 Oman hCoV-19/Oman/205041374/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T T1675C C3037T G10265A G11083T C14408T C16293T C21742T A23403G C24863T G25429T G25816C C27874T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_492192
 2020-06-04 2020-07-20
 United Kingdom hCoV-19/England/CAMB-1B488A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C218T C241T C2937T C3037T T10810C G11291A C14408T T15207A T17835C C21855T A23403G T24979C C25710T C28236T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_492193
 2020-06-04 2020-07-20
 United Kingdom hCoV-19/England/CAMB-1B4820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G94T C241T C3037T C4084T G5716A C6568T C6628T C7528T C8139T C9298T A10286G C14408T C19524T A19540G G19800T C21638T A22116G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493464
 2020-06-04 2020-07-21
 United Kingdom hCoV-19/England/NORT-285DBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495171
 2020-06-04 2020-07-22
 India hCoV-19/India/CCMB_L1931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1437T C3037T G4354A C6573T C13585T C14408T C16946T A23403G C23635A C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495173
 2020-06-04 2020-07-22
 India hCoV-19/India/CCMB_L1935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G124A C241T C313T C2470T C3037T C5700A G6476T C9693T C10815T C14408T C16626T G17211T A23403G G24328C C25587G G27632T GGG28881AAC G29474T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_495174
 2020-06-04 2020-07-22
 India hCoV-19/India/CCMB_L1959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C9693T C10815T C14408T C16626T C19170T A23403G GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495175
 2020-06-04 2020-07-22
 India hCoV-19/India/CCMB_L1963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G124A C241T C313T C3037T C5700A C9693T C10815T C14408T C16626T A23403G C25587G GGG28881AAC G29474T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_495177
 2020-06-04 2020-07-22
 India hCoV-19/India/CCMB_L1967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A4372G C5700A C9693T C14408T C16626T G19947T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495178
 2020-06-04 2020-07-22
 India hCoV-19/India/CCMB_L1973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A T8608C C9870T C11074T G11083T C13730T C23929T C28311T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495179
 2020-06-04 2020-07-22
 India hCoV-19/India/CCMB_L1975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6312A T8608C C9870T G11083T C13730T C23929T C28311T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495185
 2020-06-04 2020-07-22
 India hCoV-19/India/CCMB_M14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9693T C14408T G19947T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495192
 2020-06-04 2020-07-22
 India hCoV-19/India/CCMB_M2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A2439G C3037T G4354A C6573T C10029T C13487T C14408T A23403G C25528T GGG28881AAC C29272T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495194
 2020-06-04 2020-07-22
 India hCoV-19/India/CCMB_M22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6573T C14408T C17304T A23403G G24626T C25528T GGG28881AAC C29272T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495196
 2020-06-04 2020-07-22
 India hCoV-19/India/CCMB_M25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T G1890T C3037T C5700A C9693T C10815T C14408T C16626T C19170T A23403G GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495406 MT791861
 2020-06-04 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A7981G C9967T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_495409 MT791864
 2020-06-04 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0503/2020
 C241T C1059T C3037T C10188T C14408T C18171A T22220C C23059T A23403G T24982C G25563T C27964T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_497353 MT831460
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1925/2020
 ATTAAAGG1- C241T C3037T C6445T C14408T G16813A G16852T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497357 MT831184
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1929/2020
 AT1- C241T C875T C3037T C14408T C14768T C15933T G16968T T19839C G21724T A23403G C23638T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497387 MT831483
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1959/2020
 ATTAAAGG1- C241T C1059T C3037T C14408T A23403G G25563T G27890T C28770T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497410 MT831149
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1982/2020
 A1- C241T C3037T G8075A C11471T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497411 MT831307
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1983/2020
 A1- C241T C3037T C14408T C15933T T19839C A23403G T27384C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497412 MT831172
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1984/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T G17964T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497413 MT831303
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1985/2020
 AT1- C241T C3037T T5335C C6445T G14186A C14408T G16813A G16852T C17747T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497414 MT831298
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1986/2020
 AT1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497415 MT831241
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1987/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497416 MT831332
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1988/2020
 AT1- C241T C1060T C3037T C14408T T19839C A23403G G25445A C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497417 MT831261
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1989/2020
 AT1- C241T C3037T C6033T C14408T C15933T T19839C A23403G G24933T T27384C GGG28881AAC G29737T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497418 MT831392
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1990/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C4582T G7393T C8175T C12053T C14408T A20268G G21718T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497420 MT831286
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1992/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497421 MT831346
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1993/2020
 AT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497422 MT831468
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1994/2020
 ATTAAAGGTTTAT1- C241T C3037T C6445T C14408T G16813A G16852T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497423 MT831320
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1995/2020
 A1- C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_497424 MT831472
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1996/2020
 A1- C8782T C17747T A17858G C18060T C21575T T28144C AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_497425 MT831180
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1997/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_497426 MT831477
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1998/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_497427 MT831278
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S1999/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497428 MT831431
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2000/2020
 AT1- C241T C3037T C4582T G7393T C8175T C12053T C14408T A20268G G21718T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497429 MT831204
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2001/2020
 A1- C241T C3037T C6445T C14216T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497431 MT831252
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2003/2020
 ATTAAAGGTTTAT1- C241T C1060T C3037T C8326T C14408T T19839C A23403G G25445A C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497432 MT831151
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2004/2020
 A1- C241T C3037T T8559A G8561A T10190C C10507T C14408T C19145T T19839C A23403G G28690T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497435 MT831259
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2007/2020
 AT1- C241T G1742A C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497436 MT831357
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2008/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC A29154G C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497437 MT831378
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2009/2020
 A1- C8782T G11083T C17747T A17858G C18060T G19872T G21724T T28144C AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_497438 MT831411
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2010/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497440 MT831128
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2012/2020
 A1- C241T C3037T T8559A G8561A T10190C C10507T C14408T C19145T T19839C A23403G G27014T G28690T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497441 MT831140
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2013/2020
 A1- C241T C3037T G4510T C14408T C15933T G16207A T19839C T21522C T22690C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497442 MT831444
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2014/2020
 A1- G3371A C8782T C17747T A17858G C18060T T19783C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497443 MT831266
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2015/2020
 A1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497444 MT831452
 2020-06-04 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2016/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_498796 MT846007
 2020-06-04 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_333/2020
 C241T A1163T C3037T G8720A C11497T C14408T T20609C A23403G C26642A A26927G G28223T GGG28881AAC G29402T

EPI_ISL_501088
 2020-06-04 2020-07-30
 United States hCoV-19/USA/WA-UW-10381/2020
 ATTAAAGG1- T18D C20V AC35TT C241T C3037T G4510T T8883C T8886A TA14222GC C14408T C15933T G16207A T19839C T21522C T22690C A23403G T25451C C26366T GGG28881AAC C29784T TG29867AA C29870A

EPI_ISL_507783
 2020-06-04 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC20997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C355T C1059T C3037T A5011M C14408T A23403G G25563T C26078T G28027C C28893T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_507784
 2020-06-04 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC20998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C355T C1059T C3037T A5011M C14408T A23403G G25563T C26078T G28027C C28893T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_507785
 2020-06-04 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC20999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C355T C1059T C3037T A5011M C14408T A23403G G25563T C26078T G28027C C28893T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_508320
 2020-06-04 2020-08-04
 India hCoV-19/India/IB41/2020
 AT1- C241T C3037T C8917T G9389A C14408T T23257A A23403G GGG28881AAC G29868A

EPI_ISL_508437
 2020-06-04 2020-08-04
 India hCoV-19/India/MW34/2020
 ATTAAAGGTTTATACCTTCC1- C241T T1947C C3037T C4540T C6633T C11109T C14408T C18877T C22444T A23403G G25563T C26111T C26735T C28854T C29137T G29868A

EPI_ISL_509377
 2020-06-04 2020-08-05
 Singapore hCoV-19/Singapore/767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4893T C6310A C6312A G11083T A11228G C13730T C19524T C23185T C23929T A24915T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509802 MT846647
 2020-06-04 2020-08-05
 United States SARS-CoV-2/human/USA/IL-UW-961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14599T G15732T T19143C A20268G A23403G T28072C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509960 MT846648
 2020-06-04 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-962/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509961 MT846649
 2020-06-04 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9491T C14408T C14599T G15732T T19143C A20268G A23403G T28072C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509962 MT846650
 2020-06-04 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14599T G15732T T19143C A20268G A23403G T28072C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510870
 2020-06-04 2020-08-07
 Sweden hCoV-19/Sweden/20-52052/2020
 C241T C1059T C3037T C7165T C14408T A23403G G24368T C25561T G25563T G26277T C26455T G29212A

EPI_ISL_512827
 2020-06-04 2020-08-12
 Singapore hCoV-19/Singapore/791/2020
 ATTAAAGGTTTA1- G428A T926G C1684T C6310A C6312A T10612A G11083T G12160A C13730T C19524T C23185T C23929T C25546T G25769A C28311T AAAAAAAAAAAA29892-

EPI_ISL_512828
 2020-06-04 2020-08-12
 Singapore hCoV-19/Singapore/792/2020
 ATTA1- C4543T C6310A C6312A C7390Y G11083T C12672T C13730T C19524T C20428T C21364T T22478Y C23185T C23929T C27577T C28311T AAAAAAAAAAAA29892-

EPI_ISL_512829
 2020-06-04 2020-08-12
 Singapore hCoV-19/Singapore/793/2020
 AT1- C4543T C6310A C6312A C7390T G11083T C12672T C13730T C19524T C20428T C21364T T22478C C23185T C23929T C27577T C28311T AAAAAAAAAAAA29892-

EPI_ISL_514821
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T T27050G G29179T G29779T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_514825
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2422/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_514826
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2423/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514827
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2424/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T G15372T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_514828
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2425/2020
 ATTAAAG1- C241T C1059T T1831C C3037T C7528T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514829
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2426/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514831
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2428/2020
 ATTAAAGGT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_514832
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2429/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_514833
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2430/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514834
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2431/2020
 AT1- T3C C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C25572T G29179T G29779T AAAAAAAAAAAAAAA29889-

EPI_ISL_514835
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2432/2020
 ATTAAAGGT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G21468T A23403G G25563T G27703T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_514836
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2433/2020
 C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514837
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2434/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514838
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2435/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_514839
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2436/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T G15372T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_514842
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2439/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_514850
 2020-06-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2447/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516892
 2020-06-04 2020-08-24
 Israel hCoV-19/Israel/CVL-n18311/2020
 C241T C1059T G2398A C3037T T4200G C11916T C14408T G18105T C18998T A23403G G25563T G26217T G29540A A29752T

EPI_ISL_516893
 2020-06-04 2020-08-24
 Israel hCoV-19/Israel/CVL-n18346/2020
 C241T C683T C1059T C3037T T3547C C5144T C6402T G8572T G11083T C14408T G17427T A23403G G25563T G25690T

EPI_ISL_516894
 2020-06-04 2020-08-24
 Israel hCoV-19/Israel/CVL-n18352/2020
 C241T C683T C1059T C3037T T3547C C5144T C6402T G8572T G11083T C14408T G17427T A23403G G25563T G25690T A29649G

EPI_ISL_516895
 2020-06-04 2020-08-24
 Israel hCoV-19/Israel/CVL-n18416/2020
 C241T C1059T C3037T C10969T C11916T C14408T C18998T A23403G G25563T G26217T G28812T G29540A A29752T

EPI_ISL_516896
 2020-06-04 2020-08-24
 Israel hCoV-19/Israel/CVL-n18467/2020
 C241T C683T C1059T C3037T T3547C C5144T C6402T G8572T G11083T C14408T G17427T A23403G G25563T G25690T G29449T

EPI_ISL_517944 MT966133
 2020-06-04 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1054/2020
 AT1- C241T C601T C3037T G4904T C8389T C8950T C9936T C14408T C22432T A23403G G25563T G27915A C29272T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_523263
 2020-06-04 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T13006C C14408T G16236T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523264
 2020-06-04 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523361
 2020-06-04 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C28399T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523362
 2020-06-04 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T6634C C11109T C14408T G15452T G19398T A23403G G25563T C27707T GTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATC28003- G28321T G29477T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523507
 2020-06-04 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524029
 2020-06-04 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-20404V/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A30G C241T G1659T C3037T C3140T C3619T A6058G A6211G C14408T C19113T A23403G C26750T G28347T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524030
 2020-06-04 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-20906V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T G6032A C10681T C14408T A23403G C28422T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524031
 2020-06-04 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-21056V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T G1401A C1545T C3037T C14408T C16289T C16575T A23403G G25091T G27415T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524032
 2020-06-04 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-21119V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T T11638C C14408T C16848A T19331G A23403G GGG28881AAC G29422A C29708T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_525924
 2020-06-04 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0905/2020
 ATTAAAGGT1- C241T C1059T C3037T C10755T C11916T C14408T C14599T A23403G C25466T G25563T G28027T G29742T

EPI_ISL_526224
 2020-06-04 2020-09-01
 Hungary hCoV-19/Hungary/MH-9653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8140T C13667T C14408T A20268G G22468T A23403G C29025T AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_528743
 2020-06-04 2020-09-08
 Malaysia hCoV-19/Malaysia/MGI-MAEPS54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C6312A G11083T C13329T C13730T C20823T C23929T C26607T C28311T A29086T C29218T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_528744
 2020-06-04 2020-09-08
 Malaysia hCoV-19/Malaysia/MGI-MAEPS67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A G11083T C13329T C13730T C20823T C23929T C26607T C28311T A29086T C29218T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_529081
 2020-06-04 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529082
 2020-06-04 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C601T C3037T C8389T T11110C G12832T C14408T A23403G G25563T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529083
 2020-06-04 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T C29503T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_529084
 2020-06-04 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C601T C3037T C8389T G12832T C14408T A23403G G25563T G27915A C29503T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_530117
 2020-06-04 2020-09-10
 Spain hCoV-19/Spain/MD-R85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T606G C7564T G7798T C8782T G13126T T19035A A23403G A23586G T25860C C26088T C27213T T28144C C28603T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534327
 2020-06-04 2020-09-13
 Spain hCoV-19/Spain/MD-H12-44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5822T G8548T C14408T C15579T T19839C A23403G GGG28881AAC ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534714 MW000369
 2020-06-04 2020-09-14
 United States SARS-CoV-2/human/USA/MD-MDH-0177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T T2152C C3037T C14408T A17697G G18756T C20148T A23403G G25563T C26333T GCCACGCGGAGTAC29737- C29762T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_534716 MW000371
 2020-06-04 2020-09-14
 United States SARS-CoV-2/human/USA/MD-MDH-0179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C281T C2416T C3037T C13663T C14408T A21163G A23403G G25563T G26233T C29200T

EPI_ISL_535674
 2020-06-04 2020-09-15
 United States hCoV-19/USA/CA-CDC-4697/2020
 C241T A846M C3037T C5497T G8872A C14408T G17706A G18169A C18526T G18972K A20268G C22858T A23403G T24076C C27630T G28209T C28854T G29427T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535675 MW001673
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4698/2020
 C241T C3037T C14408T C15960T G19969A A20268G A23403G C25047T G26155T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535676 MW001898
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4699/2020
 C241T C1288T C3037T C11575T C14408T A20268G A23403G A26019G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535677 MW001899
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4700/2020
 C241T C1288T C3037T C11575T C14408T A20268G A23403G A26019G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535678 MW001900
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4701/2020
 C241T C1288T C3037T C11575T C14408T A20268G A23403G A26019G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535679 MW001901
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4702/2020
 C241T C3037T C6196T C14408T T15432C G17193T A20268G A23403G T24076C C24748T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535680 MW001902
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4703/2020
 C241T C1101T C3037T A12533G C14408T A20268G G22139T A23403G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535681 MW001903
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4704/2020
 C241T C3037T C4596A C14408T G19086T A20268G C23114T A23403G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535682 MW001904
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4705/2020
 C241T C3037T C5183T G13850T C14408T G17334T A20268G C21396T A23403G T24076C C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535683 MW001905
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4706/2020
 C241T C3037T A3691C T4435A C10156T C14408T A20268G A23403G T24076C T27957C C28153T C28854T C29738T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535684 MW001906
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4707/2020
 C241T C2536T C3037T T4324C C5339Y C7728T C10458T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535685 MW001907
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4708/2020
 C241T G319T C3037T C9166T C14408T A15162G A20268G A23403G T24076C T27384C C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535686 MW001908
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4710/2020
 C241T C2536T C3037T T4324C C4586T C7728T C10458T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535687
 2020-06-04 2020-09-15
 United States hCoV-19/USA/CA-CDC-4711/2020
 C241T C823T C3037T C14408T A20268G A23403G T24076C G26167T C28854T C29642T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535688 MW001909
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4712/2020
 C241T C2536T C3037T T4324C C4586T C7728T C10458T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535689 MW001910
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4713/2020
 C241T C1059T C1218T A2647G G2809T C3037T C14408T T17687C A23403G G25563T C25886T C29353T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535691 MW001911
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4715/2020
 C241T C320T C2536T C3037T T4324C C5339T C7728T C10458T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535692 MW001912
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4716/2020
 C241T C1059T C1218T A2647G G2809T C3037T C3902A C5093Y C12559Y C14408T T17687C A23403G G25563T C25886T C29353T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535693 MW001913
 2020-06-04 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4717/2020
 C241T C1059T C1500A C3037T C7528T C14408T G22225T A23403G G25563T G26718T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_541725
 2020-06-04 2020-09-23
 India hCoV-19/India/MH-NIV-52010/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C1121T C3037T T5137C C5700A C7764T G14277T C14408T C14937T G18090T A23403G C26645T GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_545425
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545426
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T T20037C A23403G G25563T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545429
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T T20037C A23403G G25563T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545430
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2102T C3037T C5339T C6606T A8580T C10188T G12332T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545436
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24197T GGG28881AAC G29224T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545437
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C289T C1059T C3037T C3092A C7299T C10319T C14408T C14768T G16795T G21010T C21682T A23403G G25483A G25563T A27083G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545438
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T T11134C C14408T A18535G C19011T A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545439
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G598T C601T C1059T C3037T C14408T G18412T C23191T A23403G G25563T C28093T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545442
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2102T C3037T C6606T A8580T C10188T G12332T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545444
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6926T A11359G C11916T C14225A C14408T C18998T A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545449
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545458
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C335T A1080C C3037T G12322A C14408T C16017T A23403G C24718A T27212C G27561T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545466
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T T27656C C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545470
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15024T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545483
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545490
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5806T C14408T C20474T A23403G C26858T A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545492
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T C14408T A23403G G25563T C26625T C27964T AA29902-

EPI_ISL_545498
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545519
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545520
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C12400T C14408T G17278T C17573T A23403G C23988T G25563T G26031A C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545521
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545522
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4180T G7798T C10301A T11134C C14408T C19011T A23403G G25819A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545523
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5230T C14408T A23403G C23435T C25613T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545530
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5206T C10319T C11575T C14408T A18468C A20262G G21305A A23403G G25563T C27964T C28868T G29764A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545532
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C3037T C4927T C13168T C14408T C16163T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545533
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545538
 2020-06-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-2764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12754T C14408T A18082G A23403G C23410T G25563T C27874T C27964T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548254
 2020-06-04 2020-09-25
 Sweden hCoV-19/Sweden/20-52053/2020
 C241T GGTCTT1598- C3037T C14408T C16887T A23403G GGG28881AAC

EPI_ISL_548471
 2020-06-04 2020-09-26
 United States hCoV-19/USA/CA-CZB-3781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTT1- C241T C379A C1059T C3037T C7162Y C14408T T19104C A23403G G25563T T27296C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_548476
 2020-06-04 2020-09-26
 United States hCoV-19/USA/CA-CZB-3776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCAT1- C379A C1059T C3037T C14408T T19104C C19495Y A23403G G25563T C29733Y TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_548481
 2020-06-04 2020-09-26
 United States hCoV-19/USA/CA-CZB-3787/2020
 ATTAAAGGTT1- C241T C379A C1059T C2902Y C3037T C14408T T19104C A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548487
 2020-06-04 2020-09-26
 United States hCoV-19/USA/CA-CZB-3779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241Y C379A C1059T C3037T G13812T C14408T T19104C A23403G G25563T T27296C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_558942
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-524247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4214C C11833T C14408T A23403G GGG28881AAC G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559100
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4B2889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11095T C14408T T19839C A23403G C26058T C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559149
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4BC4F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T G26104T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559163
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4B0F2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G599A T2153A C3037T C10650T C14408T A23403G C24138Y G26589C A27083G C27128T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559167
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4B13E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A12075G C12153T C13862T C14408T C19186T C21618A A23403G T25982Y C27350A C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559194
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4B8470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19402T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559195
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4B8A23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1537C C3037T A8072G C14408T A21851C A23403G GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559201
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4B3378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559223
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4BE1DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C3037T A5030T G9220A A10948G C11575T C14408T C14649T A23403G C27542T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559253
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4B325D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C C14408T A23403G C28695T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559256
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4B43A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T T7061C C14408T A23403G C23664T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559259
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4B13C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14408T G15438T A20268G C21342T A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559283
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4B620F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6825G C14408T C17118T T20526C A23403G GGG28881AAC C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559284
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4B1F58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4624G C14408T C18877T A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559290
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4B30BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T G26104T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559302
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49AD1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559314
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4A0AB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C18807T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559316
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49A984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7173T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559320
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-4A1665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C18807T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559356
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49AC6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559392
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-497CBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25217T C25350T C25731T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559408
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-497C15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559423
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-497CAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559430
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-497899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3340K C5812Y A9433T G10265A C14408T C16362Y C18526Y A19650G A22080G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559703
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-46BBC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C8809T G10097A C14408T A23403G C23731T C25714T G28580T GGG28881AAC G29422T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_559722
 2020-06-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-46C00E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C8809T G10097A C14408T A23403G C23731T C25714T G28580T GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568692
 2020-06-04 2020-10-02
 Indonesia hCoV-19/Indonesia/JK-EIJK-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T4732C A10633G C10815T G11083T C16887T G25606C G27217T T29685A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT981419
 2020-06-04 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT981420
 2020-06-04 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C601T C3037T C8389T T11110C G12832T C14408T A23403G G25563T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT981421
 2020-06-04 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T C29503T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT981422
 2020-06-04 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C601T C3037T C8389T G12832T C14408T A23403G G25563T G27915A C29503T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_459926
 2020-06-05 2020-06-05
 India hCoV-19/India/MaxCov0024_CSIR-IGIB/2020
 C1707Y T3873Y C6310M C6312A G11083T G12685K C13730T T19982W G20005K C20081M G20305K C20457M T21289W C21306M G21641K C23929T T24622Y C27567M A27620G C28311T

EPI_ISL_459927
 2020-06-05 2020-06-05
 India hCoV-19/India/MaxCov0025_CSIR-IGIB/2020
 C1707Y C6310M C6312A G7016K G11083T G12685K C13730T A20364R A21251R G21354K AA21550MW C23929T T24622Y C28311T G29468K G29474K

EPI_ISL_467029 MT607251
 2020-06-05 2020-06-12
 India SARS-CoV-2/human/IND/GBRC169a/2020
 C241T C3037T C3634T C14408T C15324T A23403G

EPI_ISL_467030 MT607244
 2020-06-05 2020-06-12
 India SARS-CoV-2/human/IND/GBRC169b/2020
 C241T C3037T C3634T C14408T C15324T A23403G G27882A C28854T

EPI_ISL_467031 MT607249
 2020-06-05 2020-06-12
 India SARS-CoV-2/human/IND/GBRC170a/2020
 G24C C241T C3037T C3634T C14408T C15324T A23403G

EPI_ISL_467032 MT607250
 2020-06-05 2020-06-12
 India SARS-CoV-2/human/IND/GBRC170b/2020
 G24C C241T C3037T C3634T C14408T C15324T A23403G C28854T

EPI_ISL_467033 MT607612
 2020-06-05 2020-06-12
 India SARS-CoV-2/human/IND/GBRC171/2020
 C241T C3037T C14408T G14831T G16852T C18877T G19417T G19872T G22021A A23403G G25563T C26735T C28948T

EPI_ISL_467034 MT607602
 2020-06-05 2020-06-12
 India SARS-CoV-2/human/IND/GBRC172/2020
 C241T C2836T C3037T A5462G C14408T C18877T C22444T C22987T A23403G G25563T C26735T C28854T

EPI_ISL_467035 MT607613
 2020-06-05 2020-06-12
 India SARS-CoV-2/human/IND/GBRC173a/2020
 C241T C3037T C3634T C14408T C15324T A23403G

EPI_ISL_467036 MT607616
 2020-06-05 2020-06-12
 India SARS-CoV-2/human/IND/GBRC173b/2020
 C241T C3037T C3634T C14408T C15324T G16852T A23403G

EPI_ISL_467037 MT607601
 2020-06-05 2020-06-12
 India SARS-CoV-2/human/IND/GBRC174a/2020
 C241T C3037T C3634T C14408T C15324T A23403G

EPI_ISL_467038 MT607610
 2020-06-05 2020-06-12
 India SARS-CoV-2/human/IND/GBRC174b/2020
 C241T C3037T C3634T C14408T C15324T C22444T A23403G C28854T

EPI_ISL_467039 MT607615
 2020-06-05 2020-06-12
 India SARS-CoV-2/human/IND/GBRC175/2020
 C241T C3037T C3634T C14408T C15324T A23403G

EPI_ISL_467040 MT607618
 2020-06-05 2020-06-12
 India SARS-CoV-2/human/IND/GBRC176/2020
 C241T C3037T C4084T G12793T C14408T A23403G A26487G

EPI_ISL_469029 MT676389
 2020-06-05 2020-06-17
 India SARS-CoV-2/human/IND/GBRC187a/2020
 C241T C3037T C14408T C15324T A23403G C26735T G28221T G29861A

EPI_ISL_469030 MT635397
 2020-06-05 2020-06-17
 India SARS-CoV-2/human/IND/GBRC187b/2020
 C241T C3037T C3634T C4560T C14408T C18877T A23403G G25563T G29861A

EPI_ISL_469031 MT635403
 2020-06-05 2020-06-17
 India SARS-CoV-2/human/IND/GBRC188/2020
 C241T C3037T C3634T C14408T C15324T A23403G

EPI_ISL_469033 MT635408
 2020-06-05 2020-06-17
 India SARS-CoV-2/human/IND/GBRC190/2020
 C241T C3037T A3643C C11620T C14408T G18255T C18877T A23403G G25563T C26735T C28674T

EPI_ISL_469034 MT635406
 2020-06-05 2020-06-17
 India SARS-CoV-2/human/IND/GBRC191a/2020
 C241T C3037T C4084T G10396T C14408T C16163T C21207T A23403G G27014T

EPI_ISL_469035 MT635391
 2020-06-05 2020-06-17
 India SARS-CoV-2/human/IND/GBRC191b/2020
 C241T C3037T C3634T TG10395GT C14408T C15324T C21207T A23403G

EPI_ISL_469036 MT635339
 2020-06-05 2020-06-17
 India SARS-CoV-2/human/IND/GBRC192/2020
 C241T C3037T C8770T C11620T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_469048 MT635856
 2020-06-05 2020-06-17
 India SARS-CoV-2/human/IND/GBRC202/2020
 C241T C3037T C3634T C14408T C15324T A23403G

EPI_ISL_472090
 2020-06-05 2020-06-23
 United Kingdom hCoV-19/England/LIVE-A00F3/2020
 C241T C3037T C6336T C8683T C12672T C13335T C14408T A20268G A23403G G26173T C28854T

EPI_ISL_472393
 2020-06-05 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111CAD/2020
 G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_472394
 2020-06-05 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111CBC/2020
 C241T C3037T C6312A A6375G A10948G C14408T C21736T A23403G G24926T C25665T GGG28881AAC

EPI_ISL_472398
 2020-06-05 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111D04/2020
 G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_472399
 2020-06-05 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111D13/2020
 C241T C1912T C3037T C14408T A23403G T27264G C28093T GGG28881AAC

EPI_ISL_473443
 2020-06-05 2020-06-23
 United Kingdom hCoV-19/England/BIRM-61207/2020
 C241T T1847C C2299T C3037T G3955T A6084G TCAAATTCG6329- C14408T G16564T A23403G T25663C C26936T GGG28881AAC

EPI_ISL_473946
 2020-06-05 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6356/2020
 C241T C3037T C6472T C7815T C14408T A20268G A23403G

EPI_ISL_475049 MT664774
 2020-06-05 2020-06-23
 India SARS-CoV-2/human/IND/GBRC215/2020
 C241T C3037T C3634T C14408T C15324T C22444T A23403G

EPI_ISL_475058 MT665974
 2020-06-05 2020-06-23
 India SARS-CoV-2/human/IND/GBRC220/2020
 C241T C313T C1113T C3037T C5700A C14408T A23403G GGG28881AAC

EPI_ISL_475059 MT666042
 2020-06-05 2020-06-23
 India SARS-CoV-2/human/IND/GBRC221/2020
 C241T C3037T C3737T G4866T G5138T A6748G C14408T C14425A C16178T T21890C A23403G A23945C

EPI_ISL_478324
 2020-06-05 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6A74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C6926T C8683T G11083T C14408T G21624T T22032C A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478325
 2020-06-05 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6A83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478327
 2020-06-05 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6AA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25217T C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478328
 2020-06-05 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6AB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478329
 2020-06-05 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6ACF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25217T C25350T C25731T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480665 MT745648
 2020-06-05 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G3955T C4002T G10097A C13536T C14184A C14408T A23403G C23731T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480666 MT745649
 2020-06-05 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2034/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T A1163T C3037T T7540C A9826R C14408T G16647T C18377Y C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_481170
 2020-06-05 2020-07-02
 India hCoV-19/India/ILSCV32879/2020
 C241T A1350G C3037T C14408T C20692T A23403G C25339T T27206C GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_481171
 2020-06-05 2020-07-02
 India hCoV-19/India/ILSCV32889/2020
 C241T C3037T C8917T G9389A C14408T G18756T A23403G C27807T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_481172
 2020-06-05 2020-07-02
 India hCoV-19/India/ILSCV32892/2020
 C241T C3037T C8917T G9389A C14408T G18756T A23403G C27807T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481173
 2020-06-05 2020-07-02
 India hCoV-19/India/ILSCV32893/2020
 C241T C3037T C8917T G9389A C14408T G18756T A23403G C27807T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481174
 2020-06-05 2020-07-02
 India hCoV-19/India/ILSCV32895/2020
 C241T C3037T C8917T G9389A C14408T G18756T A23403G C27807T GGG28881AAC G29736T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481175
 2020-06-05 2020-07-02
 India hCoV-19/India/ILSCV32896/2020
 C241T C3037T C8917T G9389A C14408T G18756T A23403G C27807T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481176
 2020-06-05 2020-07-02
 India hCoV-19/India/ILSCV32898/2020
 C241T C3037T C8917T G9389A C14408T C19374T A23403G GGG28881AAC G29645T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481177
 2020-06-05 2020-07-02
 India hCoV-19/India/ILSCV32899/2020
 C241T C3037T C8917T G9389A C14408T C19374T A23403G GGG28881AAC G29645T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483821 MT758193
 2020-06-05 2020-07-08
 India SARS-CoV-2/human/IND/GBRC240/2020
 AT1- C241T C3037T C8460A C14408T A16970G C18877T G21666T A23403G G25563T C26735T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_483884
 2020-06-05 2020-07-08
 United Kingdom hCoV-19/England/BIRM-60754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C2299T C3037T G3955T TCAAATTCG6329- C9615T C14408T A23403G A25505T T25663C C26936T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483887
 2020-06-05 2020-07-08
 United Kingdom hCoV-19/England/BIRM-60781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C3037T C10456T C14408T C14724T A23403G G28396T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483890
 2020-06-05 2020-07-08
 United Kingdom hCoV-19/England/BIRM-607FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A19946G T21808C A23403G C23731T G24193C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483909
 2020-06-05 2020-07-08
 United Kingdom hCoV-19/England/BIRM-6096D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T G10097A C14408T A19946G A23403G C23731T G24193C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484446
 2020-06-05 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C3E2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G C25931A A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484855 MT750064
 2020-06-05 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484864 MT750072
 2020-06-05 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T G7145A A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484873 MT750081
 2020-06-05 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484883 MT750090
 2020-06-05 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T G20056A A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484886 MT750093
 2020-06-05 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4075C C5310T C12294T C14408T T22825C A23403G C25511T G25563T CGGAGT29743- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486118
 2020-06-05 2020-07-10
 United States hCoV-19/USA/CA-CZB-1785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C10319T C14408T A18424G A20387R C21304T A23122R A23403G G25563T G25907T C27964T C28472T C28869T

EPI_ISL_487410
 2020-06-05 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-21/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487412
 2020-06-05 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-23/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490204
 2020-06-05 2020-07-15
 Spain hCoV-19/Spain/HUB-50388391
 ATTAAAGGTTTATACCTTCCCA1- C241T C1377T C3037T A20268G A23403G C27476T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_490735
 2020-06-05 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C3037T T3049C C14408T G21624T A23403G G27877T GGG28881AAC

EPI_ISL_490769
 2020-06-05 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165B34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G G27877T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_491039
 2020-06-05 2020-07-16
 Romania hCoV-19/Romania/ROSV_11990/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C2268T G2867T C3037T G3216A C14408T C15324T A23403G CGCT26351TTAC C26356G A29827T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_492017
 2020-06-05 2020-07-18
 Oman hCoV-19/Oman/205041592/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G10265A C12357T C14408T C16293T T18792C A23403G A25747G C28854T GGG28881AAC G29862C GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864C

EPI_ISL_494250
 2020-06-05 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168506/2020
 ATTA1- C241T C3037T C9438T T13704C C14408T A23403G G26589T GGG28881AAC G29777T

EPI_ISL_495026 MT800013
 2020-06-05 2020-07-22
 India SARS-CoV-2/human/IND/GBRC289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C4084T C11020T C14408T A23403G A23947G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495227
 2020-06-05 2020-07-22
 India hCoV-19/India/CCMB_M70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A16999G C18877T C22444T A23403G G25563T C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495242
 2020-06-05 2020-07-22
 India hCoV-19/India/CCMB_M79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1912T C3037T C8950T G14209T C14408T A23403G GGG28881AAC T29361C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495246
 2020-06-05 2020-07-22
 India hCoV-19/India/CCMB_M81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1912T C3037T C8950T G14209T C14408T A23403G GGG28881AAC T29361C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495250
 2020-06-05 2020-07-22
 India hCoV-19/India/CCMB_M82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8950T G14209T C14408T A23403G GGG28881AAC T29361C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495407 MT791862
 2020-06-05 2020-07-22
 United States SARS-CoV-2/human/USA/FL-BPHL-0501/2020
 ATTAAAG1- C241T C1059T C3037T C3397T C14408T G15906T C20759T A23403G G25563T G28812C TGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29793-

EPI_ISL_497433 MT831273
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2005/2020
 ATTAAAGGTTTAT1- C241T T1877A C3037T A13766G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497434 MT831143
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2006/2020
 A1- C241T C3037T A13766G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497445 MT831230
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2017/2020
 AT1- C241T C3037T C10189T G13879A C14408T C15933T G16968T T19839C A23403G G28080A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497446 MT831419
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2018/2020
 AT1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497447 MT831165
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2019/2020
 C241T C3037T C6445T C11497T C14216T C14408T G16813A A21875C A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497448 MT831188
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2020/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C C22987T A23403G G26428T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_497449 MT831156
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2021/2020
 C241T C3037T C14408T G15260T C15933T G16968T T19839C A23403G G26428T C27213T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497450 MT831160
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2022/2020
 A1- C241T A2161G C3037T C5758T C14408T C15141T C16376T T18453C C18877T T22020C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_497451 MT831213
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2023/2020
 A1- C241T G2144T C3037T C3768T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497453 MT831260
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2025/2020
 AT1- C241T C3037T C14408T A18273G T19839C A21027G A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497454 MT831283
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T A12199G C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497455 MT831176
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2027/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G C27208T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_497456 MT831349
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2028/2020
 ATTAAAGGTTT1- C241T C1204T C1441T G1747A C3037T C14120T C14408T C16289T C17745T A23403G G25429T G28086T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497457 MT831358
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2029/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C26607T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497465 MT831461
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2037/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C15933T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497466 MT831486
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2038/2020
 A1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497467 MT831400
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2039/2020
 ATTAAAGGTT1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC G28985A C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497468 MT831267
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2040/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497469 MT831355
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2041/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29762T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497470 MT831362
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2042/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29762T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497472 MT831473
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2044/2020
 AT1- G1401A C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_497473 MT831402
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2045/2020
 AT1- G1401A C8782T T13438C T16863C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497474 MT831480
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2046/2020
 A1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_497475 MT831422
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2047/2020
 ATTAAAG1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C27998T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497476 MT831229
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2048/2020
 AT1- C241T C539T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497478 MT831222
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2050/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497479 MT831327
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2051/2020
 ATTAAAG1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497480 MT831314
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2052/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497483 MT831189
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2055/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C24418T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497485 MT831219
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2057/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497486 MT831450
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2058/2020
 AT1- C8782T C17747T A17858G C18060T T21745C C24381T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497487 MT831291
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497488 MT831174
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2060/2020
 AT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C G21724T A23403G C27128T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497489 MT831134
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2061/2020
 AT1- C106T C241T G1742A C3037T G11083T C14408T C14768T C15933T G16968T C18582T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497490 MT831478
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2062/2020
 AT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497491 MT831212
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2063/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T T16728C G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497492 MT831210
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2064/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T T16728C G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497497 MT831178
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2069/2020
 AT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C G21724T A23403G C27128T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497498 MT831335
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2070/2020
 AT1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC G28985A C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497499 MT831295
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2071/2020
 ATT1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC G28985A C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497500 MT831420
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2072/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497501 MT831484
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2073/2020
 AT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497502 MT831375
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2074/2020
 ATTAAAGG1- C241T C3037T C12513T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497503 MT831474
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2075/2020
 AT1- C8782T T10830C C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497504 MT831315
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2076/2020
 ATT1- C241T C3037T C12513T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497513 MT831182
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2085/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G A28591T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497514 MT831142
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2086/2020
 A1- C241T C3037T C3992T G4288T G4510T C14408T C15933T T19839C A23403G T25451C G25489T A27489T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497515 MT831336
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2087/2020
 ATTAAAG1- C241T C3037T C14408T C15933T T19839C A23403G T25451C G25489T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497516 MT831324
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2088/2020
 AT1- C241T C3037T C14408T A18273G T19839C A21027G A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497517 MT831325
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2089/2020
 AT1- C241T C3037T C14408T A18273G T19839C A21027G A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497518 MT831342
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2090/2020
 AT1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G C24904T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497519 MT831350
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2091/2020
 AT1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G C24904T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497520
 2020-06-05 2020-07-24
 United States hCoV-19/USA/WA-S2092/2020
 A1- T13C C241T C3037T C14408T C15933T G16968T T19839C A23403G C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497521
 2020-06-05 2020-07-24
 United States hCoV-19/USA/WA-S2093/2020
 AT1- C241T A2127G C3037T C14408T C15933T G16968T T19839C A23403G G26746T C27945T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497522 MT831133
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2094/2020
 ATTAAAGGTTTATAC1- C241T C3037T C3992T G4288T G4510T C14408T C15933T T19839C A23403G T25451C G25489T A27489T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497523 MT831138
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2095/2020
 ATTAAAGGTTTAT1- C241T C3037T C3992T G4288T G4510T C14408T C15933T T19839C A23403G T25451C G25489T A27489T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497524 MT831135
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2096/2020
 A1- C241T C3037T C3992T G4288T G4510T C14408T C15933T T19839C A23403G T25451C G25489T A27489T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497525 MT831169
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2097/2020
 AT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C G21724T A23403G C27128T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497526 MT831233
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2098/2020
 AT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C G21724T A23403G C27128T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497527 MT831348
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2099/2020
 ATTAAAGGTT1- C241T G2144T C3037T C3768T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497528 MT831339
 2020-06-05 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2100/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C G21724T A23403G C27128T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_499378
 2020-06-05 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168FDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T T4186C G11801A C14408T C19164T T19839C A23403G G23868T G25552T C27641T GGG28881AAC A29526T AAA29901-

EPI_ISL_499994
 2020-06-05 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A1344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6336T C8683T C13335T C14408T A20268G A21137G A23403G G26173T C28854T

EPI_ISL_500570
 2020-06-05 2020-07-29
 Singapore hCoV-19/Singapore/756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A C13730T T16542C G17427T C18894T C19524T G20356A T20430A C23929T A27486G A27489G A27571G A27579G G27589T C28311T C29545T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500571
 2020-06-05 2020-07-29
 Singapore hCoV-19/Singapore/757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4893T C6310A C6312A A11228G C13730T C19524T C23185T C23929T A24915T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501089
 2020-06-05 2020-07-30
 United States hCoV-19/USA/WA-UW-10420/2020
 ATTAAAG1- AAC34TTT C241T T833C C1059T C3037T C6548T C7860T C14408T G22592T A23403G G25537A G25563T C27964T G29527A

EPI_ISL_501286
 2020-06-05 2020-07-31
 Latvia hCoV-19/Latvia/070/2020
 C241T C3037T C9118T C14408T C16870A G17019T A20268G A23403G A25843G C28391T

EPI_ISL_507779
 2020-06-05 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC20993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1960T G2776A C3037T T11107C C12733T C14408T C17550T C21575T A23403G G25563T A25866G A26811T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_510860
 2020-06-05 2020-08-07
 Sweden hCoV-19/Sweden/20-51946/2020
 C241T A2866G C3037T C3828T C14408T C18395T CG21304AA A23403G A25986G GGG28881AAC

EPI_ISL_510861
 2020-06-05 2020-08-07
 Sweden hCoV-19/Sweden/20-51947/2020
 C241T C3037T T10881C C14408T A20268G A23403G C28854T

EPI_ISL_510862
 2020-06-05 2020-08-07
 Sweden hCoV-19/Sweden/20-51948/2020
 C241T C3037T C14408T T21698G C21767T A23403G GGG28881AAC

EPI_ISL_510863
 2020-06-05 2020-08-07
 Sweden hCoV-19/Sweden/20-51949/2020
 C241T C3037T C3267T A7358G G10642T C14408T G18636T A23403G T24631C C24865T GGG28881AAC

EPI_ISL_510864
 2020-06-05 2020-08-07
 Sweden hCoV-19/Sweden/20-51997/2020
 C241T G1421A C3037T C14408T T16926C C20946T A23403G GGG28881AAC

EPI_ISL_510865
 2020-06-05 2020-08-07
 Sweden hCoV-19/Sweden/20-52000/2020
 C241T C1059T C3037T C14408T C18714T T23293G A23403G G24368T C25452T G25563T

EPI_ISL_511851
 2020-06-05 2020-08-08
 United States hCoV-19/USA/CA-IGI-0097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G5539A C14408T G18756T G21468A A23403G GGG28881AAC A29903-

EPI_ISL_512470
 2020-06-05 2020-08-11
 United Kingdom hCoV-19/Scotland/CVR3926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A363G C2146T C3037T C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512472
 2020-06-05 2020-08-11
 United Kingdom hCoV-19/Scotland/CVR3929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T A6217G A11117G C14408T T17164G G22708T C22879A A23403G G28712A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514138
 2020-06-05 2020-08-14
 Brazil hCoV-19/Brazil/RO-08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T C14408T C23244A A23403G T27299C GGG28881AAC T29148C C29367T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_514611 MT950230
 2020-06-05 2020-08-17
 India SARS-CoV-2/human/IND/GBRC361a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T C8099T T8188C C14408T C18877T A20288C C22444T A23403G G25563T C26735T C28854T G29395T C29741T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514612 MT950231
 2020-06-05 2020-08-17
 India SARS-CoV-2/human/IND/GBRC361b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T C14408T C22444T A23403G G25563T C26735T C28854T G29395T C29741T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514840
 2020-06-05 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2437/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C11916T C14408T T14803G C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_514841
 2020-06-05 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2438/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C28147A G29179T G29779T G29843T T29851A A29871G AAAAAAAAAAAAAAAA29888-

EPI_ISL_514843
 2020-06-05 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2440/2020
 ATTAAAG1- C241T C1059T C3037T A10378G C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_514844
 2020-06-05 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2441/2020
 ATT1- C241T C1059T C3037T C11916T C14408T C16650T C18329T A20675T G21468T A23403G G25563T G27703T G29179T G29779T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514845
 2020-06-05 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2442/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T G15372T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_514846
 2020-06-05 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2443/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_514847
 2020-06-05 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2444/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514849
 2020-06-05 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2446/2020
 ATTAAA1- C241T C1059T T1831C C3037T C7528T C11916T C14408T C16650T A20675T A23403G G25563T G28580A G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_514852
 2020-06-05 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2449/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_516897
 2020-06-05 2020-08-24
 Israel hCoV-19/Israel/CVL-n19018/2020
 C241T C1059T C3037T C4455T C11916T G13201T C14408T C18998T A23403G G25563T G26217T G29540A A29752T

EPI_ISL_516898
 2020-06-05 2020-08-24
 Israel hCoV-19/Israel/CVL-n19042/2020
 C241T C683T C1059T C3037T T3547C C5144T C6402T G8572T G11083T C14408T G17427T A23403G G25563T G25690T G26065T

EPI_ISL_516899
 2020-06-05 2020-08-24
 Israel hCoV-19/Israel/CVL-n19050/2020
 C241T C1059T C3037T C9534T C11916T C14408T C18998T A23403G G25563T G26217T G29540A A29752T

EPI_ISL_520711
 2020-06-05 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3300054450/2020
 T342C C1441T C8782T G11230T A26096T T28144C G28167A G28878A G29742A

EPI_ISL_521894 MT972133
 2020-06-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1975/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_523248
 2020-06-05 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T13006C C14408T G16236T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523278
 2020-06-05 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12733T C14408T C21621T A23403G G28090T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523279
 2020-06-05 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C15981T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523353
 2020-06-05 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2885A C3037T C14408T G20275A A23403G G25055T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_524033
 2020-06-05 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-21357V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T A3523C C9979T T11212C C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524034
 2020-06-05 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-21358V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T G1401A C3037T T12883C C14408T C16289T A23403G G27415T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_525429
 2020-06-05 2020-08-29
 Oman hCoV-19/Oman/RESP-20-B-6588/2020
 ATTAAAGGTTTATACCTTCCCAG1- G1944A C3037T G10265A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_525827
 2020-06-05 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_525828
 2020-06-05 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0510/2020
 ATTA1- C241T C3037T T8729A C14408T G20980A A23403G G24751T AAAAAAA29897-

EPI_ISL_525829
 2020-06-05 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0514/2020
 ATTA1- C241T C1059T C2508T C3037T C14408T G18905A A23403G G25563T C26110T AAAAAAAAAAAA29892-

EPI_ISL_525830
 2020-06-05 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0516/2020
 ATTAAAGGTTTA1- C241T C1059T C2508T C3037T C14408T G15181A G18905A A23403G G25563T C26110T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_526091
 2020-06-05 2020-09-01
 United States hCoV-19/USA/WA-OHSU-0505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A169G C241T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_526092
 2020-06-05 2020-09-01
 United States hCoV-19/USA/WA-OHSU-0506/2020
 AT1- A169G C241T C3037T C8818T C14408T C15952T G20980A A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_526093
 2020-06-05 2020-09-01
 United States hCoV-19/USA/WA-OHSU-0512/2020
 AT1- A169G C241T C3037T C8818T C14408T C15952T G20980A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526094
 2020-06-05 2020-09-01
 United States hCoV-19/USA/WA-OHSU-0513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A169G C241T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_526095
 2020-06-05 2020-09-01
 United States hCoV-19/USA/WA-OHSU-0515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A169G C241T C3037T C8818T C14408T C15952T G20980A A23403G C27434T

EPI_ISL_526096
 2020-06-05 2020-09-01
 United States hCoV-19/USA/WA-OHSU-0517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A169G C241T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_530118
 2020-06-05 2020-09-10
 Spain hCoV-19/Spain/MD-R86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G23856T GGG28881AAC ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_530175 MT997697
 2020-06-05 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1579/2020
 ATTAAAGGTTTATACC1- C241T C337T C1059T C3037T C14408T G22801A A23403G C24616T G25563T C26985T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_530239
 2020-06-05 2020-09-11
 Australia hCoV-19/Australia/QLD958/2020/P1
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_534950
 2020-06-05 2020-09-14
 United Kingdom hCoV-19/England/OXON-B43A8/2020
 C241T C3037T T6283C C10889T C14408T T19839C G20102T A23403G C26681T GGG28881AAC C29774T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_535690
 2020-06-05 2020-09-15
 United States hCoV-19/USA/CA-CDC-4714/2020
 C186Y C241T A2647G G2809T C3037T C14408T T17687Y A20268G A23403G C23655Y T25560C C25886Y C28854T C29642T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_537566
 2020-06-05 2020-09-16
 United States hCoV-19/USA/CA-UCLA-33/2020
 A1- C241T G347T C1059T C3037T C3042T C9967T G11083T C12439T C12473T C14408T A23403G A23416T G25563T C27964T G28899T G29427T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_538270 MW010251
 2020-06-05 2020-09-16
 United States SARS-CoV-2/human/USA/MD-MDH-0186/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T C16260T C19488T A23403G G24445A G25563T G26690T C28201T C28821A C29836G T29867A C29870A

EPI_ISL_538271 MW010252
 2020-06-05 2020-09-16
 United States SARS-CoV-2/human/USA/MD-MDH-0187/2020
 ATTAAAGGTTTATACC1- C21T C241T C1059T C3037T C6268A C6606T C14408T G21850T A23403G C23520T G25563T A29333C T29867A

EPI_ISL_538272 MW010253
 2020-06-05 2020-09-16
 United States SARS-CoV-2/human/USA/MD-MDH-0189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T A12121G C14408T C14649T G16741A A23403G G24751T G25563T G27621A T29867A C29870G

EPI_ISL_538273 MW010254
 2020-06-05 2020-09-16
 United States SARS-CoV-2/human/USA/MD-MDH-0190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T A12121G C14408T C14649T G16741A A23403G G24751T G25563T G27621A T29867G C29870G

EPI_ISL_538274 MW010255
 2020-06-05 2020-09-16
 United States SARS-CoV-2/human/USA/MD-MDH-0191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C6990G A12121G C14408T C14649T G16741A A23403G G24751T G25563T G27621A T29855C T29867A C29870A

EPI_ISL_545421
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10626T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545423
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C15654T C16017T A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545424
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545431
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G C23481T C25047T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545440
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15452T G17151T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545443
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9742C T9959A C14408T A23403G C28453T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545446
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2618G C3037T G10642T G11146T C13774T C14408T C15540T C20474T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545448
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4931A C14408T C23191T A23403G G23873T T25547A G25563T G29449T G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545457
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545461
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3924T C6196T C14408T T19839C A23403G GGG28881AAC T29515C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545462
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545472
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T G13514A C14408T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545475
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A13938G C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545476
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C6636T C7521T C14408T A23403G G26526T GGG28881AAC C29738T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545477
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C799T C1059T C3037T C7299T C10319T C14408T C14768T C21682T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545478
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545480
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5806T C6582T A13278G C14408T C20474T A23403G A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545482
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6482A C14408T C23191T A23403G G25563T A29396C G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545485
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1677C C3037T C14408T C19524T A23083G A23403G C23536A A24129G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545487
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12781T C14408T C23191T A23403G G25563T T27104C G28242T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545489
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T T17137C A23403G G25563T C25584T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545491
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15438T A18818G A23403G G25494T G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545497
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3787T A10323G C14408T T15276A C22858T A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545505
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G1979A C3037T G9928T C14408T C14676T A23403G G25647T T27722C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545506
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G1979A C3037T G9928T C14408T C14676T A23403G G25647T T27722C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545511
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9163T C10319T C12513T C14408T C16995T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545512
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4180T C10301A C14408T A23403G G23948T GGG28881AAC

EPI_ISL_545518
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G10902A G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545528
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A A2568G C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545539
 2020-06-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-2765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24197T GGG28881AAC G29224T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548253
 2020-06-05 2020-09-25
 Sweden hCoV-19/Sweden/20-52051/2020
 C241T C313T G1843T C3037T C4633T T7099C GTT11283- G14118T C14408T C19934T A23403G C28512T GGG28881AAC

EPI_ISL_548475
 2020-06-05 2020-09-26
 United States hCoV-19/USA/CA-CZB-3762/2020
 ATTAAAGGTTTATACCT1- C241T C379A C1059T C3037T C14408T T19104C A23403G G25563T C25611Y T27296C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548489
 2020-06-05 2020-09-26
 United States hCoV-19/USA/CA-CZB-3792/2020
 ATTAAA1- C225M C241T T322Y C379A C1059T C3037T C14408T T19104C A21137R A23403G G25563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_554146
 2020-06-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-956AF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554191
 2020-06-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-956A31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554253
 2020-06-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-956A40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7162T T8609G C12455T C14408T C16289T G18756T A23403G G25429T C25708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554284
 2020-06-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-956A13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554313
 2020-06-05 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-956855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8944C C14408T C14741T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554817
 2020-06-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-95997D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T T19893C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559132
 2020-06-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-4BBD54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C23230T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559247
 2020-06-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-4BF35E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1627T C3037T C4320T C11494T C14076T C14408T T18309C G22335T A23403G G25563T C25688T C29529T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559319
 2020-06-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-4A0A79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C2638T C3037T A7705T C9246T C14408T C21108Y A23403G A23416T A27938T GGG28881AAC A29430T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559681
 2020-06-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-484826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C3817T C14408T A23403G G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559711
 2020-06-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-46D2F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C3817T C14408T A23403G G25429T C28099T G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560807 MW048998
 2020-06-05 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0194/2020
 C241T C1059T C1108T C3037T A3094G C6354T C14408T C14520T A21137G C23191T A23403G G25563T AAAAAAAA29896-

EPI_ISL_560974
 2020-06-05 2020-09-30
 Sweden hCoV-19/Sweden/20-51952/2020
 C241T C3037T C10894T C14408T A23403G G25266T GGG28881AAC

EPI_ISL_566054
 2020-06-05 2020-10-01
 United Kingdom hCoV-19/England/202600045/2020
 ATTAA1- C241T C3037T T7258C T8941C G12911A C14408T G15438T G20002T A20268G A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_568725
 2020-06-05 2020-10-02
 Kenya hCoV-19/Kenya/C4214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10456T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568994
 2020-06-05 2020-10-02
 France hCoV-19/France/IHU-0928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T G9479T C14408T C15324T C21575T A23403G C29738A CGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29741-

EPI_ISL_460706
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460707
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460708
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460709
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C25578T C29730T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460710
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460711
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G C25578T G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460712
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C478T C3037T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460713
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4586T G12550A C14408T A20268G C20740A A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460722
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C367T G1820A C3037T T10561C C14408T C15324T C23114T A23403G C28844T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460739
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4113T C6555T C14408T G18281A A20755C A23403G G25563T G25784T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460740
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4113T C6555T C14408T G18281A A20755C A23403G G25563T G25784T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460741
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4113T C6555T C14408T G18281A A20755C A23403G G25563T G25784T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460742
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4113T C6555T C14408T G18281A A20755C A23403G G25563T G25784T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460743
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G18281A A20755C T21748C A23403G G25563T G25784T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460746
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1997T C3037T C14408T C20930T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460747
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1959T C3037T C14408T C21008T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460748
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C17410T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460749
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8099T C14408T A20268G A23403G G29734C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460750
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4369A C14408T C16466T G16935T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460752
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C3373A C9733T C14408T A20047G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460772
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T381C C3037T C14408T C18032T G20275A A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460822
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Overijssel_32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C18647T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_460891
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Gelderland_130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C3315T A10323G C12115T C14408T T15696G A23403G C25521T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461051
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461052
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C11564T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461053
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C11564T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461054
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C11564T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461055
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461056
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A G25687T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461057
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C16466T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461058
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461059
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C8344T C11564T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461060
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Limburg_75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461089
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461090
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A1515G A3517G C9223T G11083T C14805T T17247C A17799G G26144T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461091
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C10626T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461092
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C10626T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461093
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C10626T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461094
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461095
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461097
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T G7037A C11109T C14408T A23403G G25563T C27804T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461098
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4007C C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461100
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C10626T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461112
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NA_677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461160
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461162
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C24382T G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461168
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461169
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4549G C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461171
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461173
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10587G C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461174
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22498T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461175
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461176
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20164T A23403G A24862G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461178
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G A28870G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461180
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A20268G A23403G A28741T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461191
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T C3552T C6267T G14274A C14408T C18654T G22661T A23403G A24862G T26047G C26735T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461192
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T C3552T C6267T G14274A C14408T C18654T G22661T A23403G A24292C A24862G T26047G C26735T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461200
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/NoordBrabant_166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T C3552T C6267T G14274A C14408T C18654T G22661T A23403G A24862G T26047G C26735T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461233
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/Utrecht_35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T C1594T C3037T C9712T C11109T C14408T C16887T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461374
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461382
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T G29736T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461392
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461393
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461395
 2020-06-06 2020-06-06
 Netherlands hCoV-19/Netherlands/ZuidHolland_223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_461513
 2020-06-06 2020-06-06
 United Kingdom hCoV-19/England/BIRM-5F521/2020
 C241T C3037T C13862T C14408T A23403G G25249T G25855T C28836T

EPI_ISL_461518
 2020-06-06 2020-06-06
 United Kingdom hCoV-19/England/BIRM-5F5B8/2020
 C241T G331A C3037T G3567A G10097A C14408T A23403G C23415T C23731T G24914T C27925T G28580T GGG28881AAC

EPI_ISL_461523
 2020-06-06 2020-06-06
 United Kingdom hCoV-19/England/BIRM-5F688/2020
 C241T C2299T C3037T G3955T TCAAATTCG6329- C14408T A23403G T25663C C26936T GGG28881AAC

EPI_ISL_461528
 2020-06-06 2020-06-06
 United Kingdom hCoV-19/England/BIRM-5FE44/2020
 C241T C2299T C3037T G3955T TCAAATTCG6329- C12809T C14408T A23403G T25663C C26936T GGG28881AAC

EPI_ISL_461532
 2020-06-06 2020-06-06
 United Kingdom hCoV-19/England/BIRM-5FEBD/2020
 C241T C2299T C3037T T3808C G3955T TCAAATTCG6329- C14408T A23403G T25663C C26936T GGG28881AAC

EPI_ISL_461535
 2020-06-06 2020-06-06
 United Kingdom hCoV-19/England/BIRM-5FEEA/2020
 C241T A1087G C1221T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC

EPI_ISL_461537
 2020-06-06 2020-06-06
 United Kingdom hCoV-19/England/BIRM-5FF14/2020
 C241T C2299T C3037T G3955T TCAAATTCG6329- C14408T A23403G T25663C C26936T GGG28881AAC

EPI_ISL_461538
 2020-06-06 2020-06-06
 United Kingdom hCoV-19/England/BIRM-5FF41/2020
 C241T C1221T C3037T G10097A C14408T A23403G C23731T C25708T G28580T GGG28881AAC

EPI_ISL_461543
 2020-06-06 2020-06-06
 United Kingdom hCoV-19/England/BIRM-5FF9C/2020
 C241T C2299T C3037T G3955T TCAAATTCG6329- C11322T C14408T A23403G T25663C C26936T GGG28881AAC

EPI_ISL_461998
 2020-06-06 2020-06-06
 United Kingdom hCoV-19/England/PORT-2CFDB9/2020
 C241T A1461G A3003T C3037T C5730T C7231T C14408T G19542T A23403G G24328A GGG28881AAC

EPI_ISL_469139
 2020-06-06 2020-06-17
 Singapore hCoV-19/Singapore/390/2020
 C6310A C6312A G6653A C10833T G11083T A12556G C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_469146
 2020-06-06 2020-06-17
 Singapore hCoV-19/Singapore/397/2020
 C6310A C6312A C7113T G11083T C11511T C13730T C19524T C23673T C23929T G27967C G28068T C28311T C29739G AAAAAAAAAAAA29892-

EPI_ISL_471521
 2020-06-06 2020-06-22
 United Kingdom hCoV-19/England/20242090304/2020
 C241T C3037T T7258C T8941C G12911A C14408T G15438T C16466Y A20268G A23403G

EPI_ISL_472395
 2020-06-06 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111CDA/2020
 C241T T2310G C3037T C14408T C16575T A23403G T27264G GGG28881AAC

EPI_ISL_472403
 2020-06-06 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111D5F/2020
 C241T G704A C3037T C5051T C6751T C9979T C14408T A23403G A24425C GGG28881AAC

EPI_ISL_473442
 2020-06-06 2020-06-23
 United Kingdom hCoV-19/England/BIRM-611FB/2020
 C241T C2299T C3037T G3955T TCAAATTCG6329- C14408T A23403G T25663C C26936T GGG28881AAC

EPI_ISL_473446
 2020-06-06 2020-06-23
 United Kingdom hCoV-19/England/BIRM-61243/2020
 C241T C3037T C3486A C14408T A23403G C26781T GGG28881AAC

EPI_ISL_473947
 2020-06-06 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6361/2020
 C241T C3037T C6472T C7815T C14408T A20268G G22363T A23403G T26972C

EPI_ISL_477755
 2020-06-06 2020-06-30
 United Kingdom hCoV-19/England/BIRM-61234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T814C C3037T C8818T G9479T G10097A C14408T A23403G C23731T C27577- G28580T GGG28881AAC C29077T

EPI_ISL_478158
 2020-06-06 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T G19542T G20679A G22344T A23403G T27576G G28690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478243
 2020-06-06 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1377T C3037T C14408T C16289T A23403G G25429T TTTAGCACTCAAT27568- G28077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478359
 2020-06-06 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D7080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1314T C2676T C3037T C4582T G8540A C14408T A19782T A23403G GGG28881AAC G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478360
 2020-06-06 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D709F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4547G C9665T C12473T C13665T C14408T C18167T C21952T A23403G A26402G C27046T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478371
 2020-06-06 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D71AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C6926T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479583
 2020-06-06 2020-06-30
 Singapore hCoV-19/Singapore/505/2020
 C6310A C6312A G6653A C10833T G11083T A12556G C13730T C19524T C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_480668 MT745651
 2020-06-06 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2027/2020
 C241T A1351G C3037T C14408T C16915T C18877T C18928T A23403G T24202C G25459T G25563T C26534T C26735T G27676C G28899T

EPI_ISL_481242
 2020-06-06 2020-07-02
 United States hCoV-19/USA/MN-MDH-1224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T C16260T C21575T A23403G T24660C T25502C G25563T C28821A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_482699
 2020-06-06 2020-07-05
 Singapore hCoV-19/Singapore/552/2020
 C6310A C6312A G8768T G9500A G11083T C13730T T16542C G17427T C18894T C19524T C23929T A27675C C28311T G29616T

EPI_ISL_482705
 2020-06-06 2020-07-05
 South Africa hCoV-19/SouthAfrica/KRISP-0179/2020
 ATTAAAGGTTTATAC1- C241T G2164C C3037T C11020T C14408T C16260T G17019T C17733T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_483889
 2020-06-06 2020-07-08
 United Kingdom hCoV-19/England/BIRM-607DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T G10097A C14408T A19946G A23403G C23731T G24193C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484435
 2020-06-06 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C1038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17766T G19101T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484674
 2020-06-06 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR3889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A G12163A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484837 MT750047
 2020-06-06 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7945T C14408T A23403G G25563T C26499T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484842 MT750052
 2020-06-06 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T G7145A A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486876
 2020-06-06 2020-07-12
 Spain hCoV-19/Spain/HUB-50399382/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1377T C3037T C14408T A20268G A23403G C27476T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860TT

EPI_ISL_492204
 2020-06-06 2020-07-20
 United Kingdom hCoV-19/England/CAMB-1B47C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G9479T G10097A C13536T C14408T C19156T A23403G C23731T T24063C G25409T A25948G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493465
 2020-06-06 2020-07-21
 United Kingdom hCoV-19/England/NORT-285E61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20059G A23403G G24620T G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494195
 2020-06-06 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-16807E/2020
 ATTAAAGGTTTATACC1- C241T C3037T C6582T C14408T A23403G GGG28881AAC A29903-

EPI_ISL_494263
 2020-06-06 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8944C C14408T C14741T A23403G

EPI_ISL_495181
 2020-06-06 2020-07-22
 India hCoV-19/India/CCMB_M106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5700A C14408T C16626T A23403G GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495182
 2020-06-06 2020-07-22
 India hCoV-19/India/CCMB_M116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C19170T A23403G GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495183
 2020-06-06 2020-07-22
 India hCoV-19/India/CCMB_M118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4331T G4354A C6573T A11716G C14408T C19145T A23403G C25528T G28371T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495184
 2020-06-06 2020-07-22
 India hCoV-19/India/CCMB_M135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6573T C14408T A23403G C25528T C28087T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495187
 2020-06-06 2020-07-22
 India hCoV-19/India/CCMB_M152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6573T C14408T C19610T T22514C A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495188
 2020-06-06 2020-07-22
 India hCoV-19/India/CCMB_M170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5700A C9693T C10815T C14408T C16626T C19170T G19677T A23403G GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495189
 2020-06-06 2020-07-22
 India hCoV-19/India/CCMB_M172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2325T C3037T G4354A C6573T A12547T C14408T A21137G A23403G A25381C C25528T A26319T A27379G GAT27382CTC GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495190
 2020-06-06 2020-07-22
 India hCoV-19/India/CCMB_M175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6573T C14408T C15240T C19881T G21004T A23403G C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495433
 2020-06-06 2020-07-22
 Turkey hCoV-19/Turkey/KU-023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C2509T C3037T G5015A G11083T C13620T C14408T C14724T A23403G G24262T G27703T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_497458 MT831171
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2030/2020
 AT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29732T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497459 MT831221
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2031/2020
 A1- C241T C1059T C3037T G4975T C14408T G15384T A23403G G25523T G25563T T27869C T29194C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497460 MT831485
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2032/2020
 AT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497461 MT831435
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2033/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497463 MT831196
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2035/2020
 ATTAAAGGTT1- C241T C3037T T5335C C6445T G14186A C14408T G16813A G16852T A23403G GGG28881AAC G29392T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497481
 2020-06-06 2020-07-24
 United States hCoV-19/USA/WA-S2053/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497482 MT831465
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2054/2020
 AT1- C8782T C17747T A17858G C18060T C21575T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497493 MT831202
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2065/2020
 A1- C241T C3037T C3583T C6573T C14408T C16877T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497495 MT831482
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2067/2020
 A1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_497496 MT831471
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2068/2020
 ATT1- C3311A C8782T G17671T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497506
 2020-06-06 2020-07-24
 United States hCoV-19/USA/WA-S2078/2020
 A1- C241T A2127G C3037T C14408T C15933T G16968T T19839C A23403G G26746T C27945T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_497507 MT831265
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2079/2020
 AT1- C241T C3037T C3583T C6573T C14408T C16877T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497508 MT831356
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2080/2020
 ATTAAAGGTTTA1- C241T C1449T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G C28708T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497509 MT831250
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2081/2020
 AT1- C241T C3037T C3992T G4510T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497510 MT831290
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2082/2020
 A1- C241T G2144T C3037T C3768T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497511 MT831319
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2083/2020
 AT1- C241T C3037T C14408T C15933T C16954T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497512 MT831464
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2084/2020
 ATTAAAGGTTTAT1- C241T C1059T C1063T C3037T T7211C C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497530 MT831334
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2102/2020
 C241T G1661T C3037T C6445T C14216T C14408T G16813A T19395C A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497531 MT831193
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2103/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497532 MT831159
 2020-06-06 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2104/2020
 ATT1- C241T C3037T C6968T C9474T C10074T A12180G C14408T C15933T G16968T T19839C A23403G G25266T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_499375
 2020-06-06 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168FAE/2020
 ATTAAAGGT1- C241T C3037T C3551T T5573C C6380T C7420T G11801A A13318R C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_499401
 2020-06-06 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1694DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C12781T C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C G29810T

EPI_ISL_500569
 2020-06-06 2020-07-29
 Singapore hCoV-19/Singapore/755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T C19524T C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501287
 2020-06-06 2020-07-31
 Latvia hCoV-19/Latvia/071/2020
 C241T C3037T C5183T C5822T C14408T A23403G GGG28881AAC

EPI_ISL_507287
 2020-06-06 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII21538S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1401A C3037T C14408T A23403G G27415T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_507288
 2020-06-06 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII21769S/2020
 C241T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_507290
 2020-06-06 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII21802S/2020
 ATT1- C241T C3037T C14408T A23403G A24580G GGG28881AAC G29449T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_508160
 2020-06-06 2020-08-04
 India hCoV-19/India/AR13/2020
 A1- C241T T1947C C3037T T4579A G5012T A10874G C14408T C17036T C18877T C22444T A23403G G25563T C26735T C28854T G29868A

EPI_ISL_508161
 2020-06-06 2020-08-04
 India hCoV-19/India/AR14/2020
 AT1- C241T T1947C C3037T T4579A G5012T A10874G C14408T C17036T C18877T C22444T A23403G G25563T C26735T C28854T G29868A

EPI_ISL_508303
 2020-06-06 2020-08-04
 India hCoV-19/India/IB25/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T1094C C3037T G3250A C8917T C10645T C14408T C18129T A23403G GGG28881AAC G29868A

EPI_ISL_511926
 2020-06-06 2020-08-10
 India hCoV-19/India/MW35/2020
 ATTAAAGGTTTATACCTTC1- C241T T1947C C3037T C4540T C6633T C11109T C14408T C18877T C22444T A23403G G25563T C26111T C26735T A28254T C28854T C29137T GTA29747T -29843A A29849T GC29853TT C29857A G29868A

EPI_ISL_511927
 2020-06-06 2020-08-10
 India hCoV-19/India/MW36/2020
 ATTAAAGGTTTATACCTT1- G23T C241T T1947C C3037T C4540T C6633T C11109T C14408T C18877T C22444T A23403G G25563T C26111T C26735T C26752A A28254T C28854T C29137T G29868A

EPI_ISL_514848
 2020-06-06 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2445/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_514853
 2020-06-06 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2450/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T G15372T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514854
 2020-06-06 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2451/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T G15372T C16650T A20675T A23403G G25563T G29179T G29779T T29851A A29871T AAAAAAAAAAAAAAAA29888-

EPI_ISL_516413
 2020-06-06 2020-08-20
 North Macedonia hCoV-19/North Macedonia/2499/2020
 ATTAAA1- C241T C3037T C7299T C14408T C18877T A23403G C25207T G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_516414
 2020-06-06 2020-08-20
 North Macedonia hCoV-19/North Macedonia/2531/2020
 ATTAAA1- C241T C466T C1848T C3037T C6539T C7749T A8244G G10265A C10632T C14408T C14786T A15972G C19718T A23403G G25913T T28759C GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_520712
 2020-06-06 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3300059655/2020
 C241T C3037T C4965T A8072G C11776T C14408T A16011G T20534C A23403G A24669T GGG28881AAC

EPI_ISL_522453
 2020-06-06 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2671/2020
 A4- G8T T10A C241T C3037T G5830A C11300T C14408T C19186T T19839C G21004T A23403G G28456A GGG28881AAC AAAAAA29898-

EPI_ISL_523249
 2020-06-06 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T13006C C14408T G16236T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523250
 2020-06-06 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T6082C T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523251
 2020-06-06 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523252
 2020-06-06 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523265
 2020-06-06 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T G11083T T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525758 MT946887
 2020-06-06 2020-08-31
 United States SARS-CoV-2/human/USA/AK-PHL440/2020
 ATTAAAGGTTT1- C241T C2143T C3037T C14408T A20268G A23403G C29119T C29370G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_537567
 2020-06-06 2020-09-16
 United States hCoV-19/USA/CA-UCLA-34/2020
 A1- C241T C379A C1059T C3037T G4510T C14408T A23403G G25563T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_538269 MW010250
 2020-06-06 2020-09-16
 United States SARS-CoV-2/human/USA/MD-MDH-0185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T A3936T A6866T A6869T C11289T C14408T C15037T T19497C G19501C T19503A G19509A A20472C A23403G G25563T C27649T AGTGTAC29756- T29867A

EPI_ISL_545398
 2020-06-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-2575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2102T C3037T C6606T C6636T C10188T G12332T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545401
 2020-06-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-2578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545402
 2020-06-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-2579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T T1390G C3037T C9565T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545405
 2020-06-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-2582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9742C C10626T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545411
 2020-06-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-2588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11464A C12459T C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545455
 2020-06-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-2657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12076T C14408T A23403G G25563T C25844T G25907T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545464
 2020-06-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-2668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545479
 2020-06-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-2691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20536G A23403G GGG28881AAC G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545503
 2020-06-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-2720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2228C C3037T C14408T C16163T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545507
 2020-06-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-2724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11464A C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545513
 2020-06-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-2734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T12827C C14408T C23191T A23403G G23948T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545516
 2020-06-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-2737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2228C C3037T C14408T C16163T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554147
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-9567FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554150
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-956891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C7973T C14408T A23403G C25896T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554163
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-956B6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7996T C14408T C16391T C18348T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554173
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-9569E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T G8990A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554201
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-956794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1957A C3037T C6026T G10097A C14408T C14605T G17721T C18032T C21614T TTA21991- A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554204
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-956B10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4690C T7153Y G7798T C11985T C14408T C19488T A23403G C25566Y G28655C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554237
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-956B7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554239
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-95698F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3340T T7258C T8941C G12911A C14408T G15438T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554249
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-956907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T G3239T C12924T C14408T C15738T G17331K C20115T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554254
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-956A9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5497T C14408T G17964T A20268G C20270T C22295T A23403G C25318T C26022T C28341T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554272
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-956837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9661T C14408T T21802C A23403G C27644Y GGG28881AAC CCACGCGGAGT29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554274
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-956925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2101T C3037T A8257G C11095T C14408T T19839C C20941T A23403G C26058T C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554286
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-9569BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3961T C14183T C14408T G15894T T19893C A23403G G25523T C27689Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554300
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-956758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A941G C3037T T10294C C11020T G11771A C14408T G15906T A20268G C21846T A23403G G25352T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554314
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-956934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3338T C3511T G4201K C14408T A22301G A23403G G29508A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554836
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559147
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-4C2BF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G21468T T22849C A23403G G25606T ACTCTCCAATTTTTCTTA27683- CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_559154
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-4BD059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3486T C14408T G16846A T16908C G18170T G21800A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559157
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-4C1966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3287A G6653T T10573A C14408T C16289T C18508T A23403G G25249T G25429T C29445T C29518T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559164
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-4B9B89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G9479T G10097A C13536T C14408T C18526T A23403G C23731T T24063C A25948G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559174
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-4C40D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T T5247C G5629T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559187
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-4BC773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25566T C27972T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559218
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-4C414D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T T5247C G5629T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559236
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-4C16E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T G7873T G10097A C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559241
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-4C4DC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559263
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-4B2519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4396G C6633T C14408T G17443T A23403G G23429T C24208T C28826T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559296
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-4C2C8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A8245G G21468T T22849C C22993T A23403G G25606T ACTCTCCAATTTTTCTTA27683- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559354
 2020-06-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-4A1234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6324G A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT940481
 2020-06-06 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C12784T C14408T C23127T A23403G G25563T C28887T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_470801
 2020-06-07 2020-06-18
 Bangladesh hCoV-19/Bangladesh/icddrb-2083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T A1163T C2695T C3037T C14408T A23403G GGG28881AAC C29311T G29315T G29392T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_471146
 2020-06-07 2020-06-19
 United States hCoV-19/USA/WI-GMF-05510/2020
 C241T C379A C1059T T2153C C3037T G4657A G7393T C8950T G11851A C14408T G21578T A23403G G25563T C25703T G28842T

EPI_ISL_471422
 2020-06-07 2020-06-21
 Romania hCoV-19/Romania/Bucuresti-294285/2020
 C241T C3037T C14408T A20268G A23403G C28854T C29200T C29451T G29557T

EPI_ISL_471424
 2020-06-07 2020-06-21
 Romania hCoV-19/Romania/Valcea/2020
 C241T C3037T C14408T T15801C C17141T C17746T T19839C A23403G C26801T G27703T C28320T GGG28881AAC

EPI_ISL_472404
 2020-06-07 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111D6E/2020
 C241T G1462A C3037T C14408T C16289T G18088T G19419T C22987T A23403G G25429T C29095T A29385G

EPI_ISL_473441
 2020-06-07 2020-06-23
 United Kingdom hCoV-19/England/BIRM-611EC/2020
 C241T A2641G C3037T C3177T C3622T G4510T C14408T G19481T A23403G G25654T C25844T C28087T GGG28881AAC

EPI_ISL_473455
 2020-06-07 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B3F1D/2020
 C241T A1829G C3037T G4184A A5829G T9831C A12652G C14408T C18877T C21614T A23403G G24197T G25563T T25732G C26735T T27616C

EPI_ISL_473484
 2020-06-07 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B48A8/2020
 C241T A2554G C2650T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C25624T GGG28881AAC

EPI_ISL_473948
 2020-06-07 2020-06-23
 United Kingdom hCoV-19/Scotland/EDB6369/2020
 C241T C3037T C14408T C20031T A23403G C28810T GGG28881AAC

EPI_ISL_475026 MT669321
 2020-06-07 2020-06-23
 India SARS-CoV-2/human/IND/GBRC203a/2020
 C241T A2292C C2836T C3037T C5700A C14408T A23403G G25563T GGG28881AAC C29750T

EPI_ISL_475027 MT669322
 2020-06-07 2020-06-23
 India SARS-CoV-2/human/IND/GBRC203b/2020
 C241T C1113T C3037T G4300T C14408T A16512G C18568T C18877T C19154T G21724T C22444T A23403G C26735T C28854T A28880G G28883C C29750T

EPI_ISL_475028 MT664117
 2020-06-07 2020-06-23
 India SARS-CoV-2/human/IND/GBRC204a/2020
 C241T A2292C C2836T C3037T G4300T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_475029 MT664118
 2020-06-07 2020-06-23
 India SARS-CoV-2/human/IND/GBRC204b/2020
 C241T G2518T C2836T C3037T C14408T A16512G C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T G28739T C28854T

EPI_ISL_475083 MT655750
 2020-06-07 2020-06-23
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_101/2020
 C241T A1163T C3037T C10198T C14408T G19398A A23403G T25597C GGG28881AAC

EPI_ISL_475084 MT655751
 2020-06-07 2020-06-23
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_103/2020
 C241T A1163T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_475165 MT655948
 2020-06-07 2020-06-23
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_104/2020
 C241T A1163T C3037T C14408T C19273T A23403G GGG28881AAC

EPI_ISL_475166 MT656011
 2020-06-07 2020-06-23
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_107/2020
 G216A C241T A1163T C3037T C11606T C14408T G15921T G21538T A23403G GGG28881AAC

EPI_ISL_475167 MT656257
 2020-06-07 2020-06-23
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_111/2020
 C241T A1163T C2910T C3037T C3828T C3961T C5866T G5950T G11083T C14408T C14649T A23403G C24181T GGG28881AAC T29661C

EPI_ISL_475168 MT656591
 2020-06-07 2020-06-23
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_117/2020
 C241T A1163T C3037T C14408T A23403G C27769T C28744T GGG28881AAC

EPI_ISL_475171 MT655743
 2020-06-07 2020-06-23
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_102/2020
 C241T A1163T C3037T G7243A C14408T T17009C G23282T A23403G GGG28881AAC

EPI_ISL_475172 MT655744
 2020-06-07 2020-06-23
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_109/2020
 C241T T1036C A1163T C3037T C3961T A5366G C5832T C9246T C14110A C14408T C20436T A23403G GGG28881AAC C29218T

EPI_ISL_475173 MT655745
 2020-06-07 2020-06-23
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_110/2020
 C241T A1163T C3037T C14408T G21941T A23403G C23934T GGG28881AAC

EPI_ISL_475238 MT655746
 2020-06-07 2020-06-23
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_114/2020
 C241T A1163T C3037T C3961T C14408T C20480T G21204T C21306T C21639T A23403G GGG28881AAC

EPI_ISL_475755
 2020-06-07 2020-06-24
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_113/2020
 C241T A1163T C3037T A4503T C8127T C14408T G17427T A23403G GGG28881AAC

EPI_ISL_475756
 2020-06-07 2020-06-24
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_108/2020
 C241T A1163T C3037T C14408T TTT21980- A23095G A23403G GGG28881AAC

EPI_ISL_475757
 2020-06-07 2020-06-24
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_105/2020
 C241T A1163T C3037T A3754G C14408T A23403G GGG28881AAC

EPI_ISL_475758
 2020-06-07 2020-06-24
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_115/2020
 C241T A1163T C3037T T3533C C8327T C9565T C14408T A23403G T26302C GC27518TT GGG28881AAC

EPI_ISL_475759
 2020-06-07 2020-06-24
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_116/2020
 C241T A1163T C3037T T4579A G11761T C14408T G17259T A23403G TAT26483- A28521G GGG28881AAC

EPI_ISL_475761
 2020-06-07 2020-06-24
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_112/2020
 C241T A1163T C3037T T4579A G6359A C14408T G18105T C23029T A23403G GGG28881AAC

EPI_ISL_478330
 2020-06-07 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6B26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13389C C14408T C14605T G17721T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478331
 2020-06-07 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6B35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C981T C3037T A4547G C9665T C12473T C13665T C14408T C18167T C21952T A23403G A26402G C27046T C27059T G28655C GGG28881AAC C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478361
 2020-06-07 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D70AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C14408T A23403G C25896T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478362
 2020-06-07 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D70BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A6375G A10948G C12049T C14408T C21736T A23403G G24926T C25665T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479451
 2020-06-07 2020-06-30
 United Kingdom hCoV-19/Wales/PHWC-16531E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C2488T C3037T C3551T T5573Y C6380T C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C

EPI_ISL_480669
 2020-06-07 2020-07-02
 Australia hCoV-19/Australia/VIC1944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3955T C4002T G10097A C13536T C14184A C14408T C17745Y A23403G C23731T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_482708
 2020-06-07 2020-07-05
 South Africa hCoV-19/SouthAfrica/KRISP-0185/2020
 C241T C3037T C14408T G19999T A23403G C23625T A26021C GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_483566
 2020-06-07 2020-07-07
 Spain hCoV-19/Spain/HUB-56597693/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C1377T C3037T A20268G A23403G C27476T A29827T G29830T A29833T CC29835TT ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_483901
 2020-06-07 2020-07-08
 United Kingdom hCoV-19/England/BIRM-608D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2299T C3037T G3955T TCAAATTCG6329- C14408T A23403G C23655T T25663C C26936T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484459
 2020-06-07 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C5B9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G24197T G25563T C26151T C26735T C27143T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484489
 2020-06-07 2020-07-08
 United Kingdom hCoV-19/England/SHEF-CAB7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18348T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484515
 2020-06-07 2020-07-08
 United Kingdom hCoV-19/England/SHEF-D1466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484839 MT750049
 2020-06-07 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T G7145A A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484853 MT750062
 2020-06-07 2020-07-08
 United States SARS-CoV-2/human/USA/IL-UW-478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5310T C12294T C14408T T22825C A23403G C25511T G25563T CGGAGT29743- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484888 MT750094
 2020-06-07 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488186
 2020-06-07 2020-07-14
 United Kingdom hCoV-19/England/NORT-29306A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489845 EPI_ISL_491041
 2020-06-07 2020-07-14
 Romania hCoV-19/Romania/ROSV_12278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T A2140G C3037T C9665T T9697C C11866T C14408T A20268G A23403G C23413T ATTCAAGACTCACTTTCTTCCACAGCAAGTGCACTTGGAAAACTTCAAGATGTGGTC24362- C24421A TTCTTGCTAGTTACACTAGCCATCCTTACTGCGCTTC26320- CGTTCTTCGGAATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGA29211- T29726- TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_490723
 2020-06-07 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-16578B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A489G C3037T T5465C G6387A C14408T C19185T G21624T A23403G G24102A AA25800TT GGG28881AAC AAAAAAA29897-

EPI_ISL_490727
 2020-06-07 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-1657F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1385T C3037T C9438T C14408T A23403G GGG28881AAC G29777T

EPI_ISL_490787
 2020-06-07 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165C9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8944C C14408T C14741T G22484T A23403G C25380T G27382T A28294C AAAAAAAAA29895-

EPI_ISL_490795
 2020-06-07 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165D10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C C29870M

EPI_ISL_490852
 2020-06-07 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-166210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G7675T C14408T A23403G GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_491244
 2020-06-07 2020-07-16
 Portugal hCoV-19/Portugal/IGC4391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T C14408T A15984T C19662T C20946T C22075T A23403G C27945T G28086T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491246
 2020-06-07 2020-07-16
 Portugal hCoV-19/Portugal/IGC4395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C180T C241T C3037T C14408T A23403G C25046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491248
 2020-06-07 2020-07-16
 Portugal hCoV-19/Portugal/IGC4403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C180T C241T C3037T C14408T A23403G C25046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494175
 2020-06-07 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-167F09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T T6197C T7020G C7420T C10078T C14408T C18322T A23403G G25563T T25577G C25904T G26842A

EPI_ISL_494262
 2020-06-07 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1685F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C

EPI_ISL_495191
 2020-06-07 2020-07-22
 India hCoV-19/India/CCMB_M181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T G1599T C3037T A6466G A6616G A7319G C14408T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_497462 MT831399
 2020-06-07 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2034/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497494 MT831470
 2020-06-07 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2066/2020
 AT1- C225T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497533 MT831179
 2020-06-07 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2105/2020
 ATTAAAGGTTT1- C241T C1943T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC T29418C C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497534 MT831364
 2020-06-07 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2106/2020
 ATTAAAG1- C241T C3037T C14408T C15933T C16551T T19839C A23403G T27384C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497535
 2020-06-07 2020-07-24
 United States hCoV-19/USA/WA-S2107/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_497545 MT831305
 2020-06-07 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2117/2020
 ATTAAA1- C241T C3037T G7393T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497546 MT831208
 2020-06-07 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2118/2020
 ATTAAAGGT1- C241T G2144T C3037T C3768T C10789T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497547 MT831168
 2020-06-07 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2119/2020
 AT1- C241T G2144T C3037T C3768T C10789T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497550 MT831257
 2020-06-07 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2122/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497551 MT831246
 2020-06-07 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2123/2020
 AT1- C241T C3037T C3992T G4510T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497553 MT831366
 2020-06-07 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2125/2020
 AT1- C241T C1204T C1441T G1747A C3037T C14408T C16289T C17745T A23403G G25429T C29523T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497554 MT831268
 2020-06-07 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2126/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497555 MT831256
 2020-06-07 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2127/2020
 AT1- C241T C3037T C14408T C15933T G16968T C18747T T18765A T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497556 MT831403
 2020-06-07 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2128/2020
 ATTAAAGGTTTATACCT1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497557 MT831436
 2020-06-07 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2129/2020
 ATTAAAG1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_498243
 2020-06-07 2020-07-27
 Senegal hCoV-19/Senegal/57273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1625T C3037T C9565T C14408T A20268G A23403G G25459T C26735T C28833T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_498602
 2020-06-07 2020-07-27
 Singapore hCoV-19/Singapore/704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C6310A C6312A G11083T A12556G C13511T C13730T A15892C C19524T C21789T C23185T C23929T A25915C C28311T AAAAAAAAAAAA29892-

EPI_ISL_507289
 2020-06-07 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII21797S/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_512299
 2020-06-07 2020-08-11
 Poland hCoV-19/Poland/1154942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T G2001A C2523T C3037T C14408T C18395T C21575T A23403G GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_512300
 2020-06-07 2020-08-11
 Poland hCoV-19/Poland/1154951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T G2001A C2523T C3037T C14408T C18395T A20411G A23403G GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_514851
 2020-06-07 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2448/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G5830A C11300T C14408T C19186T T19839C G21004T A23403G G28456A GGG28881AAC T29867A

EPI_ISL_514855
 2020-06-07 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2452/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_514856
 2020-06-07 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2453/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A19782G A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514857
 2020-06-07 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2454/2020
 ATTAAAGGTTTATAC1- C16T C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T G29843A T29851A ACAAAAAAAAAAAAAA29869- A29885T

EPI_ISL_514858
 2020-06-07 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2455/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T T29851A C29857T G29864A A29871C AAAAAAAAAAAAAAAA29888-

EPI_ISL_514859
 2020-06-07 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2456/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T G15372T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_520713
 2020-06-07 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3300061195/2020
 C241T C664T C3037T C3373A C11195T C14408T G22988A A23403G G28580T GGG28881AAC

EPI_ISL_520714
 2020-06-07 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3300061831/2020
 C241T C1758T C3037T C14408T C16393T GGG28881AAC

EPI_ISL_520715
 2020-06-07 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L3300068662/2020
 C241T C3037T C14408T C21952T A23403G GGG28881AAC

EPI_ISL_522399 MT946888
 2020-06-07 2020-08-25
 United States SARS-CoV-2/human/USA/AK-PHL442/2020
 ATTAAAGGTTTATACC1- C241T C2143T C3037T C14408T A20268G A23403G C29119T C29370G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_522987
 2020-06-07 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-10-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C G529A ATG1605- C12559T G14028A C17410T C17573A G19894A A25937T G27390T A29500G G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_522988
 2020-06-07 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-10-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G14028A C17410T C17573A G19894A A25937T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_522989
 2020-06-07 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-10-5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G14028A C17410T C17573A G19894A A25937T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_522990
 2020-06-07 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-10-8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- G14028A C17410T C17573A G19894A A25937T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_522993
 2020-06-07 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-11-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1319C C3037T G4255T G11083T G12795A C14408T C18312T G19845A A23403G G26062T A26530G G26784A TTTCGC29575- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_522995
 2020-06-07 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-11-19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1319C C3037T G4255T G12795A C14408T C18312T G19845A A23403G C23683T G26062T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_522996
 2020-06-07 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-11-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1319C C3037T C4002T G4255T G11083T G12795A C14408T C18312T G19845A A23403G G26062T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_522998
 2020-06-07 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-11-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1319C C3037T C4002T G4255T G12795A C13381T C14408T C15738T C18312T G19845A A23403G G26062T A26530G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523005
 2020-06-07 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-12-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G C12325T G14274A C14408T G17193A A23403G A24862G T26047G C26645T G29779T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523006
 2020-06-07 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-12-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G G14274A C14408T G17193A A23403G A24862G T26047G C26645T G29779T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523007
 2020-06-07 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-12-23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G G14274A C14408T G17193A A23403G A24862G C25487T T26047G C26645T G29779T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523008
 2020-06-07 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-12-37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T A4967G G14274A C14408T G17193A A23403G A24862G T26047G C26645T G29779T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523009
 2020-06-07 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-12-7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174A C241T C1380T C3037T A4967G G14274A C14408T C17002T G17193A A23403G A24862G T26047G C26645T G29779T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523206
 2020-06-07 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G G25091T GTTAATCCAGTA26158- G28086T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523301
 2020-06-07 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C10277T C11109T G12794A C14408T A23403G G25563T TT29726- C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523335
 2020-06-07 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9866T C12357T T13210C C14408T C17135T G17632T C18877T C19512T G20718T C22444T A23403G G25563T C26735T C28854T C29719G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523491
 2020-06-07 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_528691
 2020-06-07 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/195/2020
 C241T C3037T C3792T G5924A C12616T C14408T C17999T T21775G A23403G T27035C GGG28881AAC

EPI_ISL_530119
 2020-06-07 2020-09-10
 Spain hCoV-19/Spain/MD-R90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2724T C3037T C14408T A20268G TTTGGGTGTTTA21982- A23403G C23625T C25469T C28854T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_534885
 2020-06-07 2020-09-14
 United Kingdom hCoV-19/England/OXON-B3761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACA1- C241T C3037T C12933T C14408T C14708T C17474T G22346T A23403G G24781T A27979G GGG28881AAC A29891M AAAAAAAAAA29894-

EPI_ISL_543802
 2020-06-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-2828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T G18833T C18998T A23403G G25563T G26828T A29083G G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543807
 2020-06-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-2834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T G7798T T11134C C14408T A18535G C19011T T23245G A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543812
 2020-06-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-2841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543818
 2020-06-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-2847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T G7798T T11134C C14408T A18535G C19011T T23245G A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545353
 2020-06-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-2517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4113T C10279T C11916T C14408T C18998T A23403G G24095T G25563T C26735T G28373T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545409
 2020-06-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-2586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T C18508T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545416
 2020-06-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-2595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8320T C10319T C12374T C14408T G17278T C17573T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545422
 2020-06-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-2606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10626T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545484
 2020-06-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-2697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1306T C2638T C3037T C14408T G18826T A23403G G27327T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545504
 2020-06-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-2721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T C18508T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545510
 2020-06-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-2731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545514
 2020-06-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-2735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5840C C14408T C16260T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553825
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9538C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G5461T C8782T C10834T G11230T C14120T G20173T C27752T T28144C G28167A G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553832
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9538D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G5461T C8782T C10834T G11230T C14120T G20173T C27752T T28144C G28167A G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553980
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554124
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-9567C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C7764T C14408T A19810G G22112A A23403G G24236T C27092T C27679T GGG28881AAC C29466T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554153
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-956B5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9241G G9473A G10097A C14408T C14599T A21526G A23403G C23731T C26681T G28580T GGG28881AAC C29367T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554267
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-956952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C678T C3037T C9733T G10261A C14408T C19151T A23403G G25429T A28860T C29200T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554290
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-956AB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554308
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-9569F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3156A C5183T C14408T A20268G A23403G T24217C C26571T G28109T C28854T G28968T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554616
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7765T G10097A C10741Y C14408T G20247T C20594T G21893A A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554617
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94467E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2647G C3037T C13551T C14408T C16616T C21575T C22498T A23403G GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554618
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3157T C11902T C12923T C14408T C21575T A23403G C26833Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554623
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3239K C14177T C14408T C22326Y A22407G A23403G G26262T GGG28881AAC C29095T C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554624
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9441B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T C3037T C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554625
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-943FED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21123T A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554626
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-943FA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4933C C14408T C19402T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554630
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9444ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815T C3037T A3569G G3849T A6211G A8659G C14408T C19488T A23403G GGG28881AAC G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554640
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9446BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2551C C3037T C10376A C14408T A23403G C24378T C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554651
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9443D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G347R C527T C1962T C2334Y C3037T C7735T C14408T C19454T T23255C A23403G A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554654
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94419B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C18744T A18978G A23403G G25563T TTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCAC27554- A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554657
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3486A C6843T C14408T A23403G A24123T C24381T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554664
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C100T C241T C3037T A3569G A6211G A8659G C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554677
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9440AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554681
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T C8481T A8821G C14408T C15752T C18877T G18984T A23403G G24197T G25563T T26066C C26735T T28098C G28883A G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554686
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94469C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G A23403G G28378T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554688
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G17035A A20268G C22482T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554689
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3267T C14408T A14791T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554692
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9441F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T C8481T A8821G C14408T C15752T C18877T G18984T A23403G G24197T G25563T T26066C C26735T T28098C G28883A G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554694
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554697
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94432C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554703
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554710
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3542R A6825G C14408T C17118T T20526C A23403G GGG28881AAC C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554716
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554725
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9440CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1190T C3037T A10381R C13730T C14408T A23403G G25429T G25660K G25691T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554727
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554735
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9442F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T A5317G C14408T A23403G G25912T GGG28881AAC C29045T C29269A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554741
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-943F92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G805A C3037T C6855A C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554754
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T T18732W G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554755
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9443B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9623K C11572T C14408T A23403G G25244T G28857T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554756
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12070T C14408T C19032T A23403G T23849C G24933T G25218T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554757
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9442C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554767
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-943F74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1914A C3037T G4399T C14408T T16456C A23403G G27746T C28005T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554771
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94485A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3267T C14408T A14791T A23403G C25658T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554772
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554776
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2865G C3037T G10097A C14408T C16332T C20389T G22696T A23403G C23683T C23731T C27649T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554777
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T C8481T A8821G C14408T C15752T C18877T G18984T A23403G G24197T G25563T T26066C C26735T T28098C G28883A G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554778
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9441E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G6421K G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T G28460K GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554780
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9443C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C539T C3037T C3140T C14408T G20931A G23120T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554782
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9445EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3486A C6843T C14408T A23403G A24123T C24381T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554792
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554795
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-943F38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4113T C8016T T12145G C14408T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554799
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-943F0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6983T C14408T C19170T G19509A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554802
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6336T C8683T C13335T C14408T A20268G A23403G G26173T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554804
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554808
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94423E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554809
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94424D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G23792A A28169G GGG28881AAC T29472C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554810
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9445CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14408T G15438T A20268G A23403G C24026T C25904T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554811
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9441D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C934T C3037T A3342G C14408T C20320T A20475G A23403G C25626T C27684T GGG28881AAC C29259T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554812
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9441AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6368A G10073A G10870T A13510G C14408T C21637T T22917A A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554816
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94408F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554820
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-943F56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554830
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-943F47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554832
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94440B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554833
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C539T C3037T C3140T C14408T G20931A G23120T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554834
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554841
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94427A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554846
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94459F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554853
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9442D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3338T C3511T T3616A C14408T G16843K A22301G A23403G T23686C T27634C C28269Y G29508A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555507
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944B9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T175C C241T C3037T C11572T C14408T A23403G G25244T C25321T G28857T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555512
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9448C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC G27750T C28171T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555522
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94491B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC G27750T C28171T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555525
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9446D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C913T C3037T G10097A C14408T A23403G C23731T C28005T G28580T GGG28881AAC C28905T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555534
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94476C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T G11083K C14408T T15729C A23403G C27688Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555556
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944A09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21123T A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555558
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-95995F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9241G G9473A G10097A C14408T A21526G A23403G C23731T C26681T G28580T GGG28881AAC C29421T G29449T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555574
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9449DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555590
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T C15352T C19488T C19545T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555595
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944C7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1647C C3037T C14408T A20712G A23403G G24526A G25429T C25611T T26418C C29585T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555599
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94482D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3787T A4926C C14408T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555611
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94484B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555630
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94492A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7936C T12145G C14408T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555638
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944C8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1647C C3037T C14408T A20712G G21123A A23403G G25429T C25611T T26418C C29585T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555643
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9448B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T G22801T A23403G C28854T G29711C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555647
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9448A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC G27750T C28171T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555655
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9448D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC C28171T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555662
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94480F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C C17913T A20255G C20698A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555674
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94478A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G17035A A20268G C22482T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555690
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94483C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G G29449T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555693
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9449B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7279T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555699
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94490C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C8597T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555710
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944BBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14408T G15438T T17011C A20268G A23403G C24026T G25595T G28690T C28866T G29081T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555720
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9449C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555721
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9447B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555724
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-944975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G A6211G A8659G G12514T C14408T T17928C C18508T C19488T A23403G C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555738
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9449FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21123T A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555750
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9449EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555753
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94473F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555755
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94481E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7398T G10265A C14408T A15653G C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555758
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9449A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G A23403G G24764A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559304
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-496B19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559311
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-496AD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559313
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49687C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559315
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-497152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3267T G10571T C14408T A14791T G17561A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559317
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-496706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559325
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4976EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2388Y C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559334
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4966BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130T C3037T C3170T C6336T C11572T C14408T C19961T G20006T A23403G C27673T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559336
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-496E6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C13887T C14408T C16289T T17769C A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559338
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-496B37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559344
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-496B82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559345
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4971F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3267T C14408T A14791T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559349
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-497538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3267T C14408T A14791T A23403G C25658T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559351
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-496D40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T C27804Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559355
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-4A045D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C C18568T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559359
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49692E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9964C C14408T A23403G G25217T C25350T C25731T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559361
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-497565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4021T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC G29179T G29260T G29540T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559443
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A47BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3267T C14408T A14791T G17561A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559445
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A4A57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T C20148Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559467
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A4B18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559469
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A4BDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559478
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A485D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3267T C14408T A14791T G17561A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559520
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A48D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2065T C3037T C6026T G10097A G11083T C14408T C14605T G17721T C18032T C21614T TTA21991- A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559537
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A4C9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559583
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A483F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559649
 2020-06-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A4AB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T AAGTCATTT686- G2164A C3037T T9519G C14408T C22290T A23403G C27294T TTTTGCTTGTCCTGACGGCGTAAAACACGTCTA27585- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560557
 2020-06-07 2020-09-29
 United States hCoV-19/USA/AK-PHL444/2020
 ATTAAAGGTTTATACCTTCC1- C241T C2143T C3037T C6336T C14408T A20268G A21794G G21800T A23403G G25244T C29370G CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_560808 MW048999
 2020-06-07 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0195/2020
 C241T C1059T C3037T C4230A C9803T C14408T A23403G C25318T G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_560809 MW049000
 2020-06-07 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0196/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T C20132T A23403G G25563T G27993A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_561038
 2020-06-07 2020-09-30
 Gambia hCoV-19/Gambia/GC19-1983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5515T C13694T C14408T A23403G C28310T GGG28881AAC C29025T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT635672
 2020-06-07 2020-06-18
 Bangladesh SARS-CoV-2/human/BGD/icddrb_CoV2083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T A1163T C2695T C3037T C14408T A23403G GGG28881AAC C29311T G29315T G29392T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT664106
 2020-06-07 2020-06-25
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_112/2020
 C241T A1163T C3037T T4579A G6359A C14408T G18105T C23029T A23403G GGG28881AAC

MT664109
 2020-06-07 2020-06-25
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_025/2020
 C241T A1163T C3037T G6359A C14408T C23029T A23403G C27389T GGG28881AAC

MT664171
 2020-06-07 2020-06-25
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_113/2020
 C241T A1163T C3037T A4503T C8127T C14408T G17427T A23403G GGG28881AAC

MT664175
 2020-06-07 2020-06-25
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_108/2020
 C241T A1163T C3037T C14408T TTT21980- A23095G A23403G GGG28881AAC

MT666068
 2020-06-07 2020-06-25
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_105/2020
 C241T A1163T C3037T A3754G C14408T A23403G GGG28881AAC

MT666099
 2020-06-07 2020-06-25
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_115/2020
 C241T A1163T C3037T T3533C C8327T C9565T C14408T A23403G T26302C GC27518TT GGG28881AAC

MT667351
 2020-06-07 2020-06-25
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_116/2020
 C241T A1163T C3037T T4579A G11761T C14408T G17259T A23403G TAT26483- A28521G GGG28881AAC

MT940485
 2020-06-07 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT940490
 2020-06-07 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C26537T C28695T C28887T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT940493
 2020-06-07 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT940497
 2020-06-07 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T A10479G C10834T C14408T C23127T A23403G G25563T C28887T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT940498
 2020-06-07 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C2695T C3037T C10834T C14408T C23127T A23403G G25563T C28887T G29179T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

MT940499
 2020-06-07 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T G6710T C10834T C14408T C23127T A23403G G25563T C28887T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT940503
 2020-06-07 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C26537T C28695T C28887T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT940504
 2020-06-07 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_467301
 2020-06-08 2020-06-12
 United States hCoV-19/USA/MO-WUSTL033/2020
 ATTAAAGGTTT1- C241T T833C C1059T A1982G C3037T C14408T A23403G G25563T C27964T -A29873CTTTATGATGCCAACTATTTTCTTTGCTGGCATACTAATTGTTACGACTATTGTATACCTTC A29877T AAAA29879GTGT -AAAA29885CTTCTTCAATTGTCATTACTTCGGTG AAAA29891TGGC A29896C A29899C -29902GTCCTATTTCTG

EPI_ISL_467302
 2020-06-08 2020-06-12
 United States hCoV-19/USA/MO-WUSTL035/2020
 --A2AACAGCCCTATGTGTTCATCAAACGTTCGGATGCTCGAACTGCACCTCATGGTCAGTTAG C241T C3037T C11575T C14408T C19586T A23403G G26158T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871T

EPI_ISL_467304
 2020-06-08 2020-06-12
 United States hCoV-19/USA/MO-WUSTL055/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C5497T C10851T C14408T C18175T A23403G G25563T C25667T TA26491CT T26494- T26497C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_469039 MT635405
 2020-06-08 2020-06-17
 India SARS-CoV-2/human/IND/GBRC195a/2020
 C241T C3037T T3451C C4084T C4551T C4582T C9246T C14408T A23403G C24082T C25803T

EPI_ISL_469040 MT635407
 2020-06-08 2020-06-17
 India SARS-CoV-2/human/IND/GBRC195b/2020
 C241T A2292C C2836T C3037T C4084T C9246T C14408T A23403G C29750T

EPI_ISL_469041 MT635410
 2020-06-08 2020-06-17
 India SARS-CoV-2/human/IND/GBRC196/2020
 C241T C3037T G11335T C11396T C11620T C14408T G16117T C18877T A23403G G25563T C26735T

EPI_ISL_469042 MT635404
 2020-06-08 2020-06-17
 India SARS-CoV-2/human/IND/GBRC197/2020
 C241T T721C C3037T C4084T C14408T A23403G C28603T

EPI_ISL_469043 MT635409
 2020-06-08 2020-06-17
 India SARS-CoV-2/human/IND/GBRC198/2020
 C1825T C8782T G11230T G22468T G26428T T28144C G28878A C29545T G29742A

EPI_ISL_469044 MT635858
 2020-06-08 2020-06-17
 India SARS-CoV-2/human/IND/GBRC199/2020
 C241T C2836T C3037T C4113T C14408T C18877T G22017T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_469045 MT676368
 2020-06-08 2020-06-17
 India SARS-CoV-2/human/IND/GBRC200/2020
 C241T C2836T C3037T G3994T G6694A C14408T C16726T C18877T T21024C G21724T C22444T A23403G G25445T G25563T C26735T G28083T C28854T C28926T

EPI_ISL_469046 MT635855
 2020-06-08 2020-06-17
 India SARS-CoV-2/human/IND/GBRC201a/2020
 C241T C2836T C3037T C4113T C14408T C18877T G22017T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_469047 MT635857
 2020-06-08 2020-06-17
 India SARS-CoV-2/human/IND/GBRC201b/2020
 C241T A2292C C2836T C3037T G4300T C14408T C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_471147
 2020-06-08 2020-06-19
 United States hCoV-19/USA/WI-GMF-05641/2020
 C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T

EPI_ISL_471149
 2020-06-08 2020-06-19
 United States hCoV-19/USA/WI-GMF-05678/2020
 C241T C715T C1059T C1342Y G2036T C3037T C11916T C14408T G16917T G23282K G23311T A23403G A23586G G25563T G28580K

EPI_ISL_472401
 2020-06-08 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111D31/2020
 C241T G1874T C3037T C8683T G10870T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789-

EPI_ISL_472402
 2020-06-08 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111D40/2020
 C241T G704A C3037T C5051T C14408T G17443T A23403G A24425C G27258A GGG28881AAC

EPI_ISL_472405
 2020-06-08 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111DB9/2020
 C241T A1103T C3037T A5177G C14408T A20268G A21562- G21606T TTA21991- C22227T G23012A A23403G C25714T A27156G

EPI_ISL_473450
 2020-06-08 2020-06-23
 United Kingdom hCoV-19/England/BIRM-612AD/2020
 C241T C3037T G10097A C14408T A19946G A23403G C23731T G24193C G27987T G28580T GGG28881AAC

EPI_ISL_473454
 2020-06-08 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B3EF2/2020
 C241T A2554G C2650T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C25624T C28409T GGG28881AAC

EPI_ISL_473491
 2020-06-08 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B4A57/2020
 C241T C3037T C14408T C19140T C19374T A23403G GGG28881AAC

EPI_ISL_475050 MT664796
 2020-06-08 2020-06-23
 India SARS-CoV-2/human/IND/GBRC216a/2020
 C241T A2292C C2836T C3037T G4300T C14408T A16512G C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_475051 MT664822
 2020-06-08 2020-06-23
 India SARS-CoV-2/human/IND/GBRC216b/2020
 C241T A2292C C2836T C3037T G4300T C15352T A16512G C18568T C18877T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_475052 MT664986
 2020-06-08 2020-06-23
 India SARS-CoV-2/human/IND/GBRC217a/2020
 C241T A2292C C2836T C3037T G4300T C14408T A16512G C18568T C18877T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_475053 MT664990
 2020-06-08 2020-06-23
 India SARS-CoV-2/human/IND/GBRC217b/2020
 C241T A2292C C2836T C3037T G4300T A16512G C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C29750T

EPI_ISL_475054 MT665006
 2020-06-08 2020-06-23
 India SARS-CoV-2/human/IND/GBRC218a/2020
 C241T A2292C C2836T C3037T G4300T C14408T A16512G C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_475055 MT665028
 2020-06-08 2020-06-23
 India SARS-CoV-2/human/IND/GBRC218b/2020
 C241T A2292C C2836T C3037T G4300T A16512G C18568T C18877T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_475056 MT665970
 2020-06-08 2020-06-23
 India SARS-CoV-2/human/IND/GBRC219a/2020
 C241T A2292C C2836T C3037T C14408T C18568T C18877T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_475057 MT665972
 2020-06-08 2020-06-23
 India SARS-CoV-2/human/IND/GBRC219b/2020
 C241T C2836T C2939T C3037T G4300T C14408T A16512G C18877T G21724T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_476855 MT675933
 2020-06-08 2020-06-26
 India SARS-CoV-2/human/IND/GBRC222a/2020
 C241T A2292C C2836T C3037T G4300T C14408T A16512G C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_476856 MT675939
 2020-06-08 2020-06-26
 India SARS-CoV-2/human/IND/GBRC222b/2020
 C241T A2292C C2836T C3037T G4300T C15352T A16512G C18568T C18877T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_476857 MT675937
 2020-06-08 2020-06-26
 India SARS-CoV-2/human/IND/GBRC223a/2020
 C241T A2292C C2836T C3037T G4300T C14408T A16512G C18568T C18877T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_476858 MT675940
 2020-06-08 2020-06-26
 India SARS-CoV-2/human/IND/GBRC223b/2020
 C241T A2292C C2836T C3037T G4300T A16512G C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_476859 MT675938
 2020-06-08 2020-06-26
 India SARS-CoV-2/human/IND/GBRC224a/2020
 C241T A2292C C2836T C3037T G4300T C14408T A16512G C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_476860 MT675941
 2020-06-08 2020-06-26
 India SARS-CoV-2/human/IND/GBRC224b/2020
 C241T A2292C C2836T C3037T G4300T C15352T A16512G C18568T C18877T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_476861 MT675943
 2020-06-08 2020-06-26
 India SARS-CoV-2/human/IND/GBRC225a/2020
 C241T A2292C C2836T C3037T G4300T C14408T A16512G C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C28854T C29750T A29806C

EPI_ISL_476862 MT675942
 2020-06-08 2020-06-26
 India SARS-CoV-2/human/IND/GBRC225b/2020
 C241T A2292C C2836T C3037T G4300T A16512G C18568T C18877T G21724T C22444T A23403G G25563T C26735T C28854T C29750T A29806C

EPI_ISL_478334
 2020-06-08 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6B62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478335
 2020-06-08 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6B71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T A9997C G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478336
 2020-06-08 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6B80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479276
 2020-06-08 2020-06-30
 United Kingdom hCoV-19/England/SHEF-D1509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4006A C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479349
 2020-06-08 2020-06-30
 United Kingdom hCoV-19/Wales/PHWC-164B26/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T T8944C C9491T C14408T C14741T A23403G A28294C

EPI_ISL_481178
 2020-06-08 2020-07-02
 India hCoV-19/India/ILSCV33971/2020
 C241T C3037T C8917T G9389A C14408T G18756T A23403G C27807T GGG28881AAC CGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29750-

EPI_ISL_481179
 2020-06-08 2020-07-02
 India hCoV-19/India/ILSCV33972/2020
 C241T C3037T C7843T C8917T G9389A C14408T G18756T A23403G C27807T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481180
 2020-06-08 2020-07-02
 India hCoV-19/India/ILSCV33982/2020
 C241T C3037T C8917T G9389A C14408T G18756T A23403G C27807T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481181
 2020-06-08 2020-07-02
 India hCoV-19/India/ILSCV33983/2020
 C241T C1059T C3037T C14408T C16260T G21468T G22346T A23403G G25563T C28821A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_482712
 2020-06-08 2020-07-05
 South Africa hCoV-19/SouthAfrica/KRISP-0196/2020
 C241T C3037T C10626T C14408T C16376T A23403G C24034T C27527T G28628T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_482879
 2020-06-08 2020-07-06
 France hCoV-19/France/OCC-21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T C3784T G7472A G8371T C14408T G16075T A17192C A23403G C23635T G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_482880
 2020-06-08 2020-07-06
 France hCoV-19/France/OCC-22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T C3784T G7472A C8334T G8371T C14408T G16075T A17192C A23403G C23635T C23929T G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_483570
 2020-06-08 2020-07-07
 Spain hCoV-19/Spain/HUB-50399463/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1377T C3037T A9328G C14408T A20268G A23403G A26179G C27476T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827T

EPI_ISL_483571
 2020-06-08 2020-07-07
 Spain hCoV-19/Spain/HUB-51235493/2020
 ATTAAAGGTTTATACCTTC1- C20T T25C C241T C1377T C3037T C14408T A20268G A23403G C27476T A29877G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_483572
 2020-06-08 2020-07-07
 Spain hCoV-19/Spain/HUB-56574605/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1377T C3037T A20268G A23403G C27476T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483654
 2020-06-08 2020-07-08
 Switzerland hCoV-19/Switzerland/150015_414_D02_plus/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T G11083T C14408T A20742C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483656
 2020-06-08 2020-07-08
 Switzerland hCoV-19/Switzerland/150017_415_F04_plus/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3144K G11083T C14408T C17639Y A20742C A23403G G25785C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483657
 2020-06-08 2020-07-08
 Switzerland hCoV-19/Switzerland/150018_416_G09_plus/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2905W A2907R C3037T A3625M A3633R T6890Y C8733T C12754T C14408T G19962T A23403G C28153T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483822 MT740438
 2020-06-08 2020-07-08
 India SARS-CoV-2/human/IND/GBRC241/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C4084T A10323G C12213T C14408T C17010T C17304T C20104T A23403G G25540A C25700T G28373T G29734T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_483905
 2020-06-08 2020-07-08
 United Kingdom hCoV-19/England/BIRM-60921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G960A C2299T C3037T G3955T TCAAATTCG6329- C14408T A23403G C23655T T25663C C26936T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483906
 2020-06-08 2020-07-08
 United Kingdom hCoV-19/England/BIRM-60930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2299T C3037T G3955T TCAAATTCG6329- C14408T A23403G C23655T T25663C C26936T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484222
 2020-06-08 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6BAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4547G C9665T C12473T C13665T C14408T C18167T C21952T A23403G A26402G C27046T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484223
 2020-06-08 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6BBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4547G C9665T C12473T C13665T C14408T C18167T C21952T A23403G A26402G C27046T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484384
 2020-06-08 2020-07-08
 United Kingdom hCoV-19/England/NOTT-1124A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6255T C14408T A23403G C27686G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484660
 2020-06-08 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR3857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T T21644C C26447T G28001T C28854T C28948T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484827 MT750039
 2020-06-08 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C4438T C5672T A7837C C14408T G20274T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484838 MT750048
 2020-06-08 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T A696C C3037T G3871T T3931C C6906T A8390G C14408T A23403G G24926T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484844 MT750054
 2020-06-08 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484867 MT750075
 2020-06-08 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4075C C5310T C12294T C14408T T22825C A23403G C25511T G25563T CGGAGT29743- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484884 MT750091
 2020-06-08 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484885 MT750092
 2020-06-08 2020-07-08
 United States SARS-CoV-2/human/USA/CT-UW-510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C13326T C14408T A23403G G25563T G27147T C27964T C28708T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485607
 2020-06-08 2020-07-09
 United Kingdom hCoV-19/England/202561786/2020
 A1- C241T C3037T C9979T A10323G C14408T A20268G G21778A G21853T A23403G G29195T C29272T AAAAAAAAAAAAAA29890-

EPI_ISL_486855
 2020-06-08 2020-07-11
 Romania hCoV-19/Romania/ROSV/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T G1439T C3037T T9697C T10495C G10618A C10626T C14322T C14408T T17137C A20268G A23403G TTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29728- GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795- A29902G

EPI_ISL_487413
 2020-06-08 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-24/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487414
 2020-06-08 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-25/2020
 C241T C1059T C3037T C6406T C14408T G17266A G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489833
 2020-06-08 2020-07-14
 Spain hCoV-19/Spain/HUB-51235489/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1377T C3037T C14408T A20268G A23403G C27476T G29861T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_489835
 2020-06-08 2020-07-14
 Spain hCoV-19/Spain/HUB-50066191/2020
 ATTAAAGGTTTA1- T13C C241T C1377T C3037T C14408T A20268G A23403G C27476T A29875C AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_489844 EPI_ISL_491040
 2020-06-08 2020-07-14
 Romania hCoV-19/Romania/ROSV_12235/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C5934T C14408T A21137G A23403G C26801T C28453T GGG28881AAC C29741T A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_489846 EPI_ISL_491042
 2020-06-08 2020-07-14
 Romania hCoV-19/Romania/ROSV_12421/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T T3200C C5849T C8092T T13701C C14408T G18994T A23403G GGG28881AAC G29825A AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827T

EPI_ISL_489847 EPI_ISL_491043
 2020-06-08 2020-07-14
 Romania hCoV-19/Romania/ROSV_12442/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T T3499C A9301G G9479T C14408T C14724T A20268G A23403G A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_490346
 2020-06-08 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A1924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C835T C1915T C3037T G6476K C8140T G10097A G11083T T13216G C14408T C18606Y A23403G C23731T C25708T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_490348
 2020-06-08 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A1942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2371T C3037T C6541Y C9603T C10582T C14408T T19590C A23403G C25350Y C26165T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_490739
 2020-06-08 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-1658F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C12781T C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C G29810T AAAAAA29898-

EPI_ISL_491250
 2020-06-08 2020-07-16
 Portugal hCoV-19/Portugal/IGC4425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G GGG28881AAC G29279T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491252
 2020-06-08 2020-07-16
 Portugal hCoV-19/Portugal/IGC4435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7119T C14408T A23403G G24781T G25677T A26019C C27577T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491253
 2020-06-08 2020-07-16
 Portugal hCoV-19/Portugal/IGC4466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7119T C7600T C14408T G19962T A23403G G25677T A26019C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491254
 2020-06-08 2020-07-16
 Portugal hCoV-19/Portugal/IGC4467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T C14408T A15984T C20946T C22075T A23403G C27945T GGG28881AAC G28904T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491259
 2020-06-08 2020-07-16
 Portugal hCoV-19/Portugal/IGC4479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491260
 2020-06-08 2020-07-16
 Portugal hCoV-19/Portugal/IGC4489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C5869T C14408T A20742C A23403G GGG28881AAC AGTGTAC29756- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492019
 2020-06-08 2020-07-18
 Oman hCoV-19/Oman/205042592/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G4300T G10265A C14408T C16293T C20132T A23403G C25452T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_493466
 2020-06-08 2020-07-21
 United Kingdom hCoV-19/England/NORT-285F04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20698T A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494174
 2020-06-08 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-167EFD/2020
 AT1- A4W C241T C3037T T8944C C9491T C14408T C14741T A23403G A28294C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_494360
 2020-06-08 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-168D59/2020
 ATTAAAGGTTTATAC1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_494555 MT856690
 2020-06-08 2020-07-22
 United States SARS-CoV-2/human/USA/SC-USC-PRG507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7153C C14408T C16349T A16373C C21110T A23403G G25563T C27964T C28846T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495067 MT800895
 2020-06-08 2020-07-22
 India SARS-CoV-2/human/IND/GBRC312a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2890T C3037T C7390T C9714T C14408T T14499G A23403G C28887T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495068 MT800753
 2020-06-08 2020-07-22
 India SARS-CoV-2/human/IND/GBRC312b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2890T C3037T C7390T C9714T G12613A C14408T T14499G A23403G C28887T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495069 MT800505
 2020-06-08 2020-07-22
 India SARS-CoV-2/human/IND/GBRC313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T G1306T C2836T C3037T C14408T A17760G C18877T A19779G C22444T A23403G G25563T C26735T C28854T G29179T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495195
 2020-06-08 2020-07-22
 India hCoV-19/India/CCMB_M243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T1947C C3037T G3831A C6196T C14408T C18377T C18877T G20419A C22444T A23403G G23426T G25563T C26735T C28854T G29402T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495198
 2020-06-08 2020-07-22
 India hCoV-19/India/CCMB_M343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6573T G11250A C14408T A23403G G25217T C25528T G26730C GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_497536 MT831396
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2108/2020
 AT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497537 MT831341
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2109/2020
 ATTAAAGGTTT1- G701T C8782T G11083T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C C28292A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497538 MT831446
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2110/2020
 ATTAAAG1- C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497539 MT831285
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2111/2020
 ATTAAAG1- C241T C3037T G4510T C14408T C15933T T19839C T22690C A23403G T25451C GGG28881AAC G28960T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497540 MT831379
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2112/2020
 ATTAAAG1- C241T C3037T G4510T C14408T C15933T T19839C T22690C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497541 MT831417
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2113/2020
 ATT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497542 MT831390
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2114/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497544 MT831415
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2116/2020
 ATTAAAGGTTTATAC1- T3532C C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497548 MT831333
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2120/2020
 AT1- G701T C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C C28292A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497549 MT831371
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2121/2020
 ATT1- G701T C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T C20148T T22291C T28144C C28292A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497552 MT831458
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2124/2020
 ATTAAA1- C241T C3037T C6445T C14408T G16813A G16852T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497558 MT831451
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2130/2020
 ATTAAAGGTTT1- C241T C1059T A1255G C3037T C14408T T16521C G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497559 MT831448
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2131/2020
 ATTAAAGGTTTAT1- C241T C1059T A1255G C3037T T5779C C14408T T16521C G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497562 MT831405
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2134/2020
 AT1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497564 MT831412
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2136/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497565 MT831201
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2137/2020
 AT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C C21575T A23403G C28674T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497567 MT831148
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2139/2020
 A1- C241T A2127G C3037T C3397T C14408T T15069C C15933T G16968T T19839C A23403G C28500T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_497569 MT831211
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2141/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497570 MT831347
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2142/2020
 AT1- C241T G2527T C3037T C4780T C7428T C14408T A20268G C20719T C20825T G22813A A23403G C26527T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497571 MT831449
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2143/2020
 ATTAAAG1- C241T C1059T C2508T C3037T C14408T G15181A G18905A A23403G G25563T C28866T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497573 MT831351
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2145/2020
 ATTAAAGGTTT1- C241T C2937T C3037T G4510T C14408T C15933T T19839C T22690C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497574 MT831248
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2146/2020
 AT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C G20998A A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497575 MT831397
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2147/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497576 MT831274
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2148/2020
 ATT1- C241T C3037T T13180C C14408T C14599T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497577 MT831391
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2149/2020
 ATTAAAGGTTTAT1- C241T C3037T T13180C C14408T C14599T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497578 MT831367
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2150/2020
 ATT1- C241T C3037T T13180C C14408T C14599T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497579 MT831406
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2151/2020
 C241T C3037T C6445T G8726A G11083T C14408T G16813A G16852T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497580 MT831161
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2152/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497581 MT831329
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2153/2020
 AT1- C241T G2398T C3037T C6445T C14408T G16813A A23403G C26527T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497582 MT831323
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2154/2020
 ATTAAAGGTTTAT1- C241T C3037T C6445T G8726A G11083T C14408T C14688T G16813A G16852T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497583 MT831244
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2155/2020
 ATTAAAGGTTTAT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC G29431T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497584 MT831217
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2156/2020
 ATTAAAGGTTTAT1- C241T C2508T C3037T C8730T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC G29254T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497585 MT831270
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2157/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497586 MT831262
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2158/2020
 A1- C241T C3037T G7393T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497587 MT831421
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2159/2020
 AT1- C241T C1060T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497588 MT831218
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2160/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497589 MT831240
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2161/2020
 AT1- C241T C1800T C3037T C11020T C14408T C15933T G16968T T19839C A23403G C28725T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497590 MT831292
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2162/2020
 AT1- C241T C2470T C3037T G6404T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497591 MT831338
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2163/2020
 AT1- C241T C3037T C5869T C14408T T19839C G20274T A23403G G26690T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497592 MT831153
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2164/2020
 AT1- C241T C1800T C3037T C11020T C14408T C15933T G16968T T19839C A23403G C28725T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497593 MT831163
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2165/2020
 A1- C241T C3037T G8075A G10996T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497596 MT831318
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2168/2020
 AT1- C241T C3037T C10790T C14408T G18907T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497598 MT831438
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2170/2020
 ATTAAAGGTTTATA1- C241T C1060T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497599 MT831281
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2171/2020
 AT1- C241T C3037T T13180C C14408T C14599T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497600 MT831344
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2172/2020
 A1- C241T C1060T C3037T C14408T T19839C A23403G G25445A C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497601 MT831413
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2173/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C4582T G7393T C8175T C12053T C14408T A20268G G21718T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497603 MT831245
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2175/2020
 A1- C241T C3037T C14408T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_497604 MT831404
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2176/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497605 MT831288
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2177/2020
 A1- C241T C3037T T3610C C6445T C14216T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497607 MT831231
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2179/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A21215G A23403G G23628T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497608 MT831157
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2180/2020
 A1- C241T C1204T G1747A C3037T C14408T C15026T C15933T G16968T T19839C A23403G GGG28881AAC G29543C C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497609 MT831365
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2181/2020
 AT1- C241T C3037T C6445T G8726A T12703C C14408T G16813A G16852T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497611 MT831226
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2183/2020
 A1- C241T C3037T T11025A C14408T T19839C A23403G A24775T C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497612 MT831302
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2184/2020
 ATTAAAGGTTTAT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497613 MT831194
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2185/2020
 ATTAAAGGTT1- C241T C1800T C3037T C11020T C14408T C15933T C16699T G16968T T19839C A23403G C28725T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497614 MT831234
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2186/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497615 MT831271
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2187/2020
 ATTAAAGGTTTAT1- G2144T C3037T C3768T C10789T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497616 MT831373
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2188/2020
 ATTAAAGGTTTATA1- C241T C3037T C6033T C14408T C15933T T19839C A23403G T27384C GGG28881AAC G29737T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497618 MT831125
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2190/2020
 ATT1- C241T C3037T T8559A G8561A T10190C C10507T C14408T C19145T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497620 MT831297
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2192/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C15933T G16968T C18747T T19839C C21575T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497624 MT831198
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2196/2020
 AT1- C241T C3037T G3231T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497626 MT831215
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2198/2020
 AT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C C21575T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497628 MT831322
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2200/2020
 ATTAAAGGTTTAT1- C241T C3037T C12781T C14408T C15933T G16968T T19839C A23403G G26428T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497629 MT831287
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2201/2020
 ATT1- C241T C3037T C12781T C14408T C15933T G16968T T19839C A23403G G26428T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497631 MT831385
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2203/2020
 AT1- C241T C1060T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497633 MT831414
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2205/2020
 ATTAAAGGTTTATA1- C241T C3037T C6445T C14216T C14408T G16813A T19364C A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497634 MT831326
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2206/2020
 AT1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497636 MT831152
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2208/2020
 ATTAAAGGTTTATA1- C241T C3037T G8075A G10996T C11956T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497637
 2020-06-08 2020-07-24
 United States hCoV-19/USA/WA-S2209/2020
 AT1- C241T C3037T C14408T C15933T G16968T C19688T T19839C A23403G G27676T G28851T GGG28881AAC G29764T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497638 MT831243
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2210/2020
 ATTAAAGGTTTAT1- C241T G2144T C3037T C3768T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497639 MT831300
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2211/2020
 ATTAAAGGTTT1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G A28381G G28703T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497640 MT831123
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2212/2020
 A1- C241T C3037T C10189T C14408T C15933T G16968T T19839C A23403G C27903T G28080A G28329A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497641 MT831441
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2213/2020
 AT1- C241T C3037T C4582T G7393T C8175T C12053T C14408T A20268G G21718T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497642 MT831445
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2214/2020
 ATTAAAGGTTTAT1- C241T C3037T C4582T G7393T C8175T C12053T C14408T A20268G G21718T A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497643 MT831353
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2215/2020
 A1- C241T C3037T C4582T G7393T C8175T C12053T C14408T A20268G G21718T A23403G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_497644 MT831310
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2216/2020
 AT1- C241T G2144T C3037T C3768T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497645 MT831369
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2217/2020
 AT1- C241T A2127G C3037T C3397T C14408T T15069C C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497646 MT831147
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2218/2020
 AT1- C241T C3037T T8559A G8561A T10190C C10507T C14408T C19145T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497647 MT831154
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2219/2020
 ATTAAAGGTTT1- C241T C3037T T8559A G8561A T10190C C10507T C14408T C19145T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497648 MT831311
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2220/2020
 AT1- C241T C1060T C3037T C14408T T19839C A23403G G25445A C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497649
 2020-06-08 2020-07-24
 United States hCoV-19/USA/WA-S2221/2020
 ATTAAAGGTTTATA1- C241T C3037T C5144T C14408T C15933T G16968T C19688T T19839C A23403G G27676T GGG28881AAC G29764T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497650 MT831476
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2222/2020
 AT1- C241T C1059T C3037T C14408T C16260T C18695T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497651 MT831206
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2223/2020
 A1- CG241TT C3037T C5020T C12897T C14408T C18086T T19839C C20970T A23403G C27371T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497652 MT831187
 2020-06-08 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2224/2020
 AT1- C241T C3037T T3256C G8075A C12043T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_499416
 2020-06-08 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16915C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_500010
 2020-06-08 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A2880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T8644C T12136C C14408T A17943G A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500568
 2020-06-08 2020-07-29
 Singapore hCoV-19/Singapore/754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A231G C2937T C6310A C6312A G11083T C13730T C19524T C23185T C23929T C25000T C27297T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507120
 2020-06-08 2020-08-03
 United Kingdom hCoV-19/England/NORT-29B9B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6424G G10097A C10369T C14408T G21220T A23403G C23731T T28203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507121
 2020-06-08 2020-08-03
 United Kingdom hCoV-19/England/NORT-29BA0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A21717T A23403G C24337T GGG28881AAC C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508182
 2020-06-08 2020-08-04
 India hCoV-19/India/AR34/2020
 AT1- C241T T1947C C3037T G4904T C7482T C14408T C18877T C22419T C22444T A23403G G25563T C26735T C28854T G29868A

EPI_ISL_508199
 2020-06-08 2020-08-04
 India hCoV-19/India/AR62/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C313T C3037T C14408T C19983T A23403G GGG28881AAC G29868A

EPI_ISL_508203
 2020-06-08 2020-08-04
 India hCoV-19/India/AR67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C6286T C7000T A7754C C10039T G11800T C14408T G15743A C18877T C21859T C22444T A23403G C23577T G25563T C26735T C28854T G29742A G29868A

EPI_ISL_510869
 2020-06-08 2020-08-07
 Sweden hCoV-19/Sweden/20-52049/2020
 C241T C1059T C3037T C9565T C9924T G14209T C14408T C15457T G15957T C17894T G18255T G19109T A23403G G24368T G25563T C28868T C29585T

EPI_ISL_511828
 2020-06-08 2020-08-08
 United States hCoV-19/USA/CA-IGI-0074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G5539A C14408T A15820G G21468A A23403G GGG28881AAC

EPI_ISL_512301
 2020-06-08 2020-08-11
 Poland hCoV-19/Poland/1156085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C3587T G7936A C10626T C14408T A23403G C25710T C25886T C28354T GGG28881AAC ACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29695-

EPI_ISL_512474
 2020-06-08 2020-08-11
 United Kingdom hCoV-19/Scotland/CVR3931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A363G C2146T C3037T C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512659
 2020-06-08 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0053/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C5548T C14408T T15117C C15579T G18186T G19816T A23403G C27707T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837T

EPI_ISL_514162 MT890295
 2020-06-08 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0816/2020
 AT1- C241T C936T C3037T G3259T C14408T A18428G A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_514860
 2020-06-08 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2457/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T G15372T C16650T A20675T A23403G G25563T T27995C G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514861
 2020-06-08 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2458/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T G15372T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514862
 2020-06-08 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2459/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T G15372T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514863
 2020-06-08 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2460/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514864
 2020-06-08 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2461/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_514865
 2020-06-08 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2462/2020
 ATTAAAGG1- C241T C421A C1059T C3037T C11916T C14408T C16650T A20675T G22484T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514866
 2020-06-08 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2463/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514867
 2020-06-08 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2464/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514868
 2020-06-08 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2465/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T G15372T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_514869
 2020-06-08 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2466/2020
 AT1- T3G C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_514870
 2020-06-08 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2467/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G C25339T G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516900
 2020-06-08 2020-08-24
 Israel hCoV-19/Israel/CVL-n19140/2020
 C241T C583T C683T C1059T C3037T C5144T C6402T G8572T T9518C G11083T G13976A C14408T C15026T G17427T C18747T A23403G G25563T G25690T G26640T C27143A C28253T

EPI_ISL_522400 MT946889
 2020-06-08 2020-08-25
 United States SARS-CoV-2/human/USA/AK-PHL445/2020
 ATTAAAGG1- C241T C2143T C3037T C6336T C14408T A20268G G21800T A23403G G25244T C29370G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_522437
 2020-06-08 2020-08-26
 India hCoV-19/India/MH-MW37/2020
 ATTAAAGGTTTATACCTTCC1- A26T C241T C1471T C3037T C3634T C13446T C14408T C15540T G21624T C22993T A23403G G25855T G28907T G29755T G29757T C29854T C29857A G29868A

EPI_ISL_523410
 2020-06-08 2020-08-26
 Netherlands hCoV-19/Netherlands/NH-EMC-41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T24214C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523600
 2020-06-08 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446T C14408T A23403G T24214C G28812T GGG28881AAC A29763G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524035
 2020-06-08 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-22043V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T T1107C C3037T G3281T C3698T C14408T C18120T A23403G G23501T C25603T GGG28881AAC G28899T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524036
 2020-06-08 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-22068V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T G1401A C1545T C3037T C14408T C16289T C16575T A23403G G25091T G27415T GGG28881AAC GACA29868-

EPI_ISL_524037
 2020-06-08 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-22069V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T G1401A C1545T C3037T C14408T C16289T C16575T A23403G G25091T G27415T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524038
 2020-06-08 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-22086V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T A3523C T11212C C13551T C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524039
 2020-06-08 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-22207V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C14408T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524040
 2020-06-08 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-22266V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T G1401A C3037T A6415C C14408T G15743A A23403G G27415T GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869T

EPI_ISL_524041
 2020-06-08 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-22269V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T G1401A C3037T C14408T C16289T A23122G A23403G G27415T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524042
 2020-06-08 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-22276V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T G1401A C3037T C14408T C16289T A23403G G27415T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_524043
 2020-06-08 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-22311V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T T1107C C3037T G3281T C3602T C7955T C14408T A23403G C25603T GGG28881AAC G28899T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_525808
 2020-06-08 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0440/2020
 ATTAAA1- C241T C1059T C2358T C3037T C11916T C14408T A23403G C25466T G25563T T27560A G28027T AAAAAAAAAAAAA29891-

EPI_ISL_525825
 2020-06-08 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2508T C3037T T6715A C14408T G15181A G18905A A23403G G25563T

EPI_ISL_528673
 2020-06-08 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C635T C1059T C3037T G3403T C14408T A23403G G25563T C26151T T26302C G29868A C29870A

EPI_ISL_529067
 2020-06-08 2020-09-10
 Peru hCoV-19/Peru/LAM-UPCH-0006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C683T G1440A G2891A TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_539837 MW020074
 2020-06-08 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T G1463A C3037T C3264T G7557A C8818T C14408T G21204T A23403G G25563T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_543789
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12754T C14408T A18082G A23403G C23410T G25563T C27874T C27964T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543790
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15438T A18818G A23403G G25494T G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543791
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G A26186G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543792
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2929G C3037T C10319T C12374T C13115T C14408T C21077T C21618T A23403G G25563T C27964T A29369G G29751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543794
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543795
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16877T C20474T A23403G G24998T GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543797
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4162T C9163A C9430T C10188T C14408T C16694T A23403G T24982C G25563T G27390C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543799
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11020T C14408T C16260T A23403G G25563T C28821A G29513T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543801
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543803
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A C14408T G18106T A23403G G25563T G26946T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543804
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C335T C3037T C14408T C16017T G21123T A23403G T27212C G27561T C27629T A29292T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543805
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C16163T A23403G G25563T G25641T C27964T C28849T C28868T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543806
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2536T C3037T C7072T A10286G C14408T G16852T A23403G C24374T C25513T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543810
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1699T C3037T C14408T G16943T G19117T T19330A C20703T A23403G G28086T GGG28881AAC C28887T G29554A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543811
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1699T C3037T C14408T G16943T G19117T T19330A C20703T A23403G G28086T GGG28881AAC C28887T G29554A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543813
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1699T C3037T C14408T G16943T G19117T T19330A C20703T A23403G G28086T GGG28881AAC C28887T G29554A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543815
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G598T C601T C1059T C3037T C14408T G18412T C23191T A23403G G25563T C28093T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543817
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12412T T14313C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543827
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543832
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13661A C14408T C16163T T20043C G20397A A23403G C27532T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543835
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A C14408T C15810T C18171T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543836
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5144T C11620T C12525T C14408T C17822T C18877T C20480T A23403G G25563T G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543840
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6638T C8208T C9891T C10319T C14408T A23403G G25563T C27964T G29703T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543841
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C3540T C14408T G16336A G20274T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543842
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3671A C8099T C9967T C13821T C14408T C17004T C21846T A23403G C23481T G25563T C27964T C29548T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543843
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3311T C14408T G17338T T18402C A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543844
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543845
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T C3037T C5544T C11916T C14408T C18555T C22591T A23403G A23586G G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543846
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C25844T G25907T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543849
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543851
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2969G C3037T C14408T A15655G C17104T A23403G G25563T G26389T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543860
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T19284C A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543862
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G C25487T G25563T C27964T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543876
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T C1059T C3037T C6310T C14408T C16338T G20311T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543897
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25622C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543898
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23185T A23403G G28179C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543899
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C335T C3037T C14408T C16017T G21123T A23403G C24718A T27212C G27561T C27629T A29292T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545547
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12754T C14408T A18082G A23403G C23410T G25563T C27874T C27964T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545557
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1213T C3037T G3231T G13617T C14408T C18570T T19905C G20616T A23403G G25563T C26164T C26801T C27509T C27964T G28899A C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545558
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545560
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C14408T G17278T C17573T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545561
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1909T C3037T C10319T C11575T C14408T A18468C C19032T A20262G G21305A A23403G G25563T C27964T C28868T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545563
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545564
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13680T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545565
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5416T C10279T T10800C C14408T A14747G A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545566
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T T17137C A23403G G25563T C25584T C27964T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545567
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1125T C3037T T5840C C14408T C16260T C17485T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545569
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545570
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545573
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3787T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545574
 2020-06-08 2020-09-24
 United States hCoV-19/USA/TX-HMH-2812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5840C C14408T C16260T C21156T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548483
 2020-06-08 2020-09-26
 United States hCoV-19/USA/CA-CZB-3793/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T T400C C959T C1911T C3037T G8540A C14408T C15810T A20268G G22319T G23126T A23403G T24076C C27741T G28378T C28854T C29627Y GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_553739
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953A07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553742
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9537C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C18568T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553744
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9539EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553748
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953B13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8106M C8683T G11083T C14408T G19894A G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553749
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953A43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T10453C C11195T C14408T G21238A A23403G G23593C C26527T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553750
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953BC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553751
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T C20290T G21624T A23403G G25699A A26019G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553752
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T C20290T G21624T A23403G G25699A A26019G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553761
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14408T G15438T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553762
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953BAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T C18681T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553766
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953C2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T C18681T A23403G G25429T C27002T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553771
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553772
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95357F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G A23403G G28378T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553773
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953B31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1314T C2676T C3037T C4582T G8540A C14408T G17964K A19782T A23403G GGG28881AAC G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553775
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1647C C3037T C14408T A20712G A23403G G25429T C25611T T26418C C29585T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553777
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953B6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C16323Y C18568T A19650G A23403G C26895Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553779
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1647C C3037T C14408T A20712G A23403G G25429T C25611T T26418C C29585T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553782
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553785
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9538A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T C17569T A23403G GGG28881AAC G29690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553786
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953B40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553789
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553791
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9538EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553792
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953B04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T G5629T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553795
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9539A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553797
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953AF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6825G G11083T C14408T C17118T T20526C A23403G GGG28881AAC C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553808
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953C10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11335T C14408T C16289T A23403G G25429T C26681T A29385G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553809
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953A70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6825G G11083T C14408T C17118T T20526C A23403G GGG28881AAC C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553815
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9534EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T G4255T C5192T A10720G C13994T C14408T A23403G C23996T C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553820
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9535E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553824
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7279T T12145G C14408T A22457G A23403G C25572T G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553829
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C14805T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553838
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95371F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553847
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9539DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1829G C3037T C3787T C12534T C14408T G17590T A23403G A28734G GGG28881AAC C29284T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553848
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9535BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C G6532T C14408T C20290T G21624T A23403G G25699A A26019G GGG28881AAC C29520T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553849
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9534FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C14408T A16638G A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553850
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953C3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T C18681T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553852
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953A16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T A2641G C3037T C3622T C14408T C14676T A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553856
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9537B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553860
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95372E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C884Y C3037T C14408T C21637T C21767Y A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553862
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9539FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553864
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953C01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C6629T C9803A A10786G C10833T C14408T C18687T A23403G C25844T T27811C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553867
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9535F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C534T C854T C3037T G5716T T10453C C11195T C14408T G14428T C15774T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553872
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95610F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G G25455T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553874
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955F60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10507T C12005T C14408T A23403G -28029TA GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553875
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9563EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18557T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553881
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553884
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553887
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14322T C14408T G15438T A20268G C21342T A23403G C24026T C28139A G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553890
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95663D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7397C C8090T C14408T A21323G A23403G C23895T C24904T C25578T T26318C GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553899
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2044A C3037T T3226C C14408T A23403G GGG28881AAC G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553902
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9566F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T T7061C C14408T A23403G C23664T G25266T GGG28881AAC T29128C C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553906
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G G25595T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553909
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9566B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553910
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95654F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553919
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955F9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T5644C T7357C C8047T C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553925
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553926
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955F15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T G8371T G11083T C14408T C17746T G19962T C22477T A23403G G25563T G25793A G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553927
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1238T C3037T G5704A C10138T C14408T C15324T A23403G CACCGAGGCCACGCGGAGTACGATCGAGTG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553936
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9560F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C14408T A23403G C25896T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553937
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9563FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11750T C14408T C16616T C21575T C22498T A23403G GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553938
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9566A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553943
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G A25192G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553945
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9565E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A129G C241T C3037T C13536T C14408T C14703T T22098C A23403G A26927G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553949
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95613C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14931T G20931A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553958
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9564BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A129G C241T C3037T C13536T C14408T T22098C A23403G A26927G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553966
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95658B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C2143T C3037T C3373A C12076T C14408T C14688T A23403G C26270T G27706T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553969
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9562B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553982
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95666A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C2044A C3037T C12781T C14408T A23403G GGG28881AAC G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553993
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/MILK-957A30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A C14408T A19650G G21538A A23403G G25407T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553999
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95647F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2215G C3037T T3100G C5184T G10097A C14408T A20055G A23403G C23731T C25919T G25947T C27059T T28251G CA28253TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554007
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9563BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554008
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95615A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G G25595T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554013
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11572T C14408T A23403G G25244T G28857T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554014
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9563AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A22169G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554016
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9560D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G T28405C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554019
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9562FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T G20679T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554027
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95656D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T C23086T A23403G C23731T G24755T C25513T G27762T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554029
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9560A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3153A C14408T A21137G A23403G T25496A G26918T GGG28881AAC G28904T T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554030
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9562C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554031
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554033
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955E54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T T7135A C8092T C14408T T19266A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554045
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9634T G11083T C14408T A23403G C27263T C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554047
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955FF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8655T T12145G C14408T C19983Y A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554050
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9564F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554052
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9561F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3961T C14183T C14408T G15894T T19893C A23403G G25523T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554061
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95614B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554068
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554069
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554078
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1586R C3037T T8392C C8683T C9724Y C13335T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554082
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95611E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1862T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554083
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9564AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T T13905Y C14408T G17116A G19162T A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554086
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95659A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18832A C21637T A23403G G26951C A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554090
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9565B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G G28028T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554094
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5007A C14408T T16993Y G18826T A23403G C26895T G28003C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554095
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9562A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T G22225K A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554096
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95655E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554098
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9560B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A14078G C14408T C19813T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554104
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-956309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C534T C854T C3037T C5672T G5716T T10453C C11195T C14408T G14428T C15368T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554105
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9563CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1855A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554110
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955FAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130T C3037T C3170T C6336T C11572T C14408T C19961T G20006T A23403G C25207T C27673T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554111
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95603F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554112
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9563DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G27469A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554116
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9564D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11572T C14408T A23403G G25244T G28857T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554132
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/MILK-956FC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G C3717T A6211G A8659G C14408T G16710R C19488T A23403G C28391T GGG28881AAC G28908T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554134
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/MILK-956C2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3916G C6681T C7162T C14408T G15438T A20268G C21342T A23403G C24026T G28690T C28866T G29715A G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554181
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/MILK-956EEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20031T C21742T A23403G C25603T C28810T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554211
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/MILK-956E71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C5183T C7926T G10097A T10168C C13536T C14408T C15026T G16228A A23403G C23731T C27999A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554245
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/MILK-956FF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554246
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/MILK-956ECC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC C28171T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554247
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/MILK-956CC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4410T C14408T G17641A A23403G C26833T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554291
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/MILK-956D56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T C22858T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554310
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/MILK-956EDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20031T C21742T A23403G C25603T C28810T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554368
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95374C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7113T C11289T C14408T T15051C C17913T A20255G C20698A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554371
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9537D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10893T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554399
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554401
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95368B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G A20713G A23403G G28378T C28854T G29440T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554416
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95366D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3961T C14183T C14408T G15894T T19893C A23403G G25523T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554427
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9534BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T C18681T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554457
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T C18681T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554458
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9534AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3619Y C14408T A23403G T27264G C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554474
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554493
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95380D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9856K C14408T A20425G G21641T A23403G T23788C C25945A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554503
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9534DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G G28655T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554511
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9534CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T C18681T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554571
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9536A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554981
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A96D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A21080C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558291
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-599A72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A -11075TTT G11083T C14408T A20268G C21614T G22801T A23403G C28854T G29711C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558307
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-599DE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28232T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558312
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59985A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T A10720G C14408T A23403G C25584A C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558324
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-599CA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28232T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558343
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-599BD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558379
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59977B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2676T C3037T C4582T G8540A C14408T A19782T A23403G G28817T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558676
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AB9E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T C26681T A29385G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558770
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AB7A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23063T A23403G T28196C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558875
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AB99E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C875T C3037T C9603T C14408T C18788T T19839C C21691T A23403G C23625T A25524G C26270T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559394
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49A30E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G T26715K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559400
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49A1B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12781T C14408T C23127T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559450
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A79DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G G27364T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559458
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A7526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559459
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49DA42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559480
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A6C9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559483
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49D839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A G11065C C14408T A19650G G21538A A23403G G24095A G25407T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559484
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A6132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C19454T T23255C A23403G A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559502
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AE1B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3717T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559507
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A69D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T G5629T C14408T C22227T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559512
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AE0C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559527
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AE0D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6324G A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559540
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A76E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T G9479A G10097A C14408T C14605T G17721T C18032T C21614T TTA21991- A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559559
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4ADE8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623C C3037T C6026T G10097A C14408T C14605T G17721T C18032T G18079K C21614T TTA21991- C22295Y A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559564
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A7948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A15945R C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559565
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49D23B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A20400R A23403G A25192G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559570
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49D24A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATG518- C3037T A9433T G10265A C14408T A19650G C20693A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559577
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AE06A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559578
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A766F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T G9479A G10097A C14408T C14605T G17721T C18032T C21614T TTA21991- A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559587
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A776C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559594
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AE158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6443K G13085R C14408T A23403G C25568Y C28232T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559597
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4ADFAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559598
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A6BCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10228Y G11083K C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559605
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49DBA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T592C C3037T T10009G C14408T G20102T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559608
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A78C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25217T C25350T C25731T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559622
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4ADF31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6324G A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559637
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A77E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A22622G A23403G C23731T G28580T GGG28881AAC C29358T G29384A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559640
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A6E86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222Y C241T C3037T G11083T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559641
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A7492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559648
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4ADDCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6324G A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559658
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A6141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C10647T C14408T C19454T T23255C A23403G A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559660
 2020-06-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A76BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25217T C25350T C25731T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560558
 2020-06-08 2020-09-29
 United States hCoV-19/USA/AK-PHL448/2020
 ATTAAAGGTTTA1- C241T C2143T C3037T C6336T C14408T A20268G G21800T A23403G G25244T C29370G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_560559
 2020-06-08 2020-09-29
 United States hCoV-19/USA/AK-PHL455/2020
 ATTAAAGGTTTA1- C241T C2143T C3037T C14408T A20268G A23403G C29119T C29370G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_560811 MW049002
 2020-06-08 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0198/2020
 ATTAAAGGTTT1- C241T C1059T C1108T C3037T A3094G C6354T C14408T C14520T A21137G A23403G G25563T T29867- C29870A

EPI_ISL_560812 MW049003
 2020-06-08 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0199/2020
 C21T T179C C241T C1059T C3037T A4905C A11439G C14408T C16260T A19153G C19488T C22570T A23403G G25563T G26690T C28821A A29881G A29884G

EPI_ISL_560814 MW049005
 2020-06-08 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0201/2020
 C241T C1059T C3037T C14408T C14649T A23403G G24751T A25271G G25563T G27621A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_566081
 2020-06-08 2020-10-01
 Russia hCoV-19/Russia/MOW-RII-MH254S/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1722T C3037T G11053T G11083T C14408T A23403G C27741T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_568995
 2020-06-08 2020-10-02
 France hCoV-19/France/IHU-0930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C10582T C14016T C14195T C14408T G19109T C22591T A23403G G25563T C26645T C27804T C28830A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_473501
 2020-06-09 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B4BBE/2020
 C241T A2554G C2650T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C24833T C25624T GGG28881AAC

EPI_ISL_475535
 2020-06-09 2020-06-23
 Sweden hCoV-19/Sweden/20-51955/2020
 C241T C3037T C5314T C14408T T22333C A23403G G25996T C28708T GGG28881AAC

EPI_ISL_477756
 2020-06-09 2020-06-30
 United Kingdom hCoV-19/England/BIRM-612DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4741C C14408T C16887T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477758
 2020-06-09 2020-06-30
 United Kingdom hCoV-19/England/BIRM-612F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478159
 2020-06-09 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A16882G G19542T G20679A A23403G T27576G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478338
 2020-06-09 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6C8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T G4642A G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479216
 2020-06-09 2020-06-30
 United Kingdom hCoV-19/England/SHEF-C580F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479765
 2020-06-09 2020-07-01
 United States hCoV-19/USA/FL-Miami-06_UMTL-A388/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T A10880G C14408T G16206T C21575T A23403G G25563T G25784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_480672 MT745653
 2020-06-09 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC1948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C8917T G9389A C13072T C14408T C14724Y A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480674 MT745655
 2020-06-09 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC1950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G376T C2416T C3037T G8371T T9642G G11083T C14408T G15543T C22477T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480676 MT745656
 2020-06-09 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC1952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480677 MT745657
 2020-06-09 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC1953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C2644Y C3037T C14408T C18877T T20973C A23403G G25563T C26735T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_481182
 2020-06-09 2020-07-02
 India hCoV-19/India/ILSCV34478/2020
 C241T C3037T C8917T G9389A C14408T G18756T A23403G C27807T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_481183
 2020-06-09 2020-07-02
 India hCoV-19/India/ILSCV34479/2020
 C241T C1059T C3037T C14408T C16260T G22346T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481184
 2020-06-09 2020-07-02
 India hCoV-19/India/ILSCV34480/2020
 C241T C3037T C8917T G9389A C14408T G18756T A23403G C27807T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482881
 2020-06-09 2020-07-06
 France hCoV-19/France/OCC-23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T C3784T G8371T G9191T G14122A C14408T G16075T A17192C A23403G C23635T T23965A G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_482973
 2020-06-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T G9136A C10319T C12043T C13665T C14408T A23403G G25563T T26160C C27964T C28531T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_482974
 2020-06-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T G393A C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T A25974G C27964T C28531T G28817T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_482975
 2020-06-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T G393A C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T A25974G C27964T C28531T G28817T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_482976
 2020-06-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G393A C1059T C1812T C3037T G3471A G5617T C6026T C10319T C13665T C14408T A23403G G25563T A25974G C27964T C28531T G28817T G28881A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_482977
 2020-06-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G393A C1059T C1812T C3037T G5617T C6026T C10319T C10969T C13665T C14408T A23403G G25563T A25974G G26062T C27964T C28531T G28817T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_482978
 2020-06-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1257/2020
 ATTA1- C241T G393A C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T A25974G C27964T C28531T G28817T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_482979
 2020-06-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G393A C1059T C1812T C3037T G3471A G5617T C6026T C10319T C13665T C14408T C15154T A23403G G25563T A25974G C27964T C28531T G28817T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_482980
 2020-06-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1259/2020
 ATTA1- C241T C1059T C1812T C3037T G5617T C6026T G9136A G10255T C10319T C12043T C13665T C14408T A23403G G25563T C27964T C28531T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_482981
 2020-06-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G393A C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T A25974G C27964T C28531T G28817T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_482982
 2020-06-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G393A C1059T C1469T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T A25974G C27964T C28531T G28817T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_482983
 2020-06-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T G26209T C27964T G28329T C28531T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_482984
 2020-06-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G393A C1059T C1812T A2713G C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T A25974G C27964T C28531T G28817T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_482985
 2020-06-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1812T C3037T G5617T C6026T G9136A C10319T C12043T C13665T C14408T A23403G G25563T C27964T C28531T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_482986
 2020-06-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1265/2020
 A1- C241T C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T A23403G G25563T A25974G C27964T C28531T G28817T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_482987
 2020-06-09 2020-07-06
 United States hCoV-19/USA/MN-MDH-1266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T G393A C1059T C1812T C3037T G5617T C6026T C10319T C13665T C14408T C17639T A23403G G25563T A25974G C27964T C28531T G28817T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_483899
 2020-06-09 2020-07-08
 United Kingdom hCoV-19/England/BIRM-608BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G11083T C14408T G18651T A23403G C23731T T24763C C28093T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484225
 2020-06-09 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6C9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484226
 2020-06-09 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6CAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8327T C14408T A23403G G25217T C25350T T25899C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484227
 2020-06-09 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6CBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3591G C9207T C9474T C14408T A23403G C25528T TTTTAAAGTTTCCATTTGGAATCTTGA27264- A28052G GGG28881AAC G29440A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484228
 2020-06-09 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6CC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484254
 2020-06-09 2020-07-08
 United Kingdom hCoV-19/England/LIVE-A198E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16616T C21575T C22498T A23403G GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484379
 2020-06-09 2020-07-08
 United Kingdom hCoV-19/England/NOTT-11240E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T G25563A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484382
 2020-06-09 2020-07-08
 United Kingdom hCoV-19/England/NOTT-112486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T G25563A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484407
 2020-06-09 2020-07-08
 United Kingdom hCoV-19/England/PORT-2D115E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G14310T C14408T T18398C A23403G G24781T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484461
 2020-06-09 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C61E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4801G G7675T T8908C C14408T G16377T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484848
 2020-06-09 2020-07-08
 United States hCoV-19/USA/FL-UW-473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1958A C3037T C6627T A9715G C11379T G11521- C14408T T15354C C18877T C19264T A23403G G25563T C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484849 MT750058
 2020-06-09 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T A696C C3037T G3871T T3931C C6906T A8390G C14408T A23403G G24926T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484850 MT750059
 2020-06-09 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484852 MT750061
 2020-06-09 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485608
 2020-06-09 2020-07-09
 United Kingdom hCoV-19/England/202561787/2020
 ATTAAAGGTTTATACCT1- C241T C3037T G5699R C9979T A10323G C14408T A20268G C21575Y G21778A A23403G G29195T C29272T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_488848
 2020-06-09 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A3DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C3397T T11526C C14408T C18877T A23403G G25563T C27697T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_488850
 2020-06-09 2020-07-14
 United Kingdom hCoV-19/England/HECH-259A3E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1918C C3037T C3397T T11526C C14408T C18877T A23403G G25563T C27697T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489848 EPI_ISL_491044
 2020-06-09 2020-07-14
 Romania hCoV-19/Romania/ROSV_12587/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T C17750T A20268G A23403G C23683T CGCTTC26351- C27707T A29827T G29830T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_489849 EPI_ISL_491045
 2020-06-09 2020-07-14
 Romania hCoV-19/Romania/ROSV_12615/2020
 A1C T3A C241T C3037T C5934T C14408T A23403G C26801T C28453T GGG28881AAC C29741T G29825A AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827T

EPI_ISL_489850 EPI_ISL_491046
 2020-06-09 2020-07-14
 Romania hCoV-19/Romania/ROSV_12618/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C5301T C10279T C14408T A20268G A23403G GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825A

EPI_ISL_489851 EPI_ISL_491047
 2020-06-09 2020-07-14
 Romania hCoV-19/Romania/ROSV_12619/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2140G C3037T T9697C C11866T C14408T A20268G A23403G T29726- A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_490234
 2020-06-09 2020-07-15
 United Kingdom hCoV-19/England/202822177/2020
 C218T C241T C3037T T10810C G11291A C14408T T15207A G17722T T17835C C21855T A23403G T24979C C25710T C28236T

EPI_ISL_490977
 2020-06-09 2020-07-15
 Spain hCoV-19/Spain/HUB-56574576/2020
 ATTAAAGGTTTATACCTT1- T25A C241T C1377T C3037T C14408T A20268G A23403G C27476T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_491258
 2020-06-09 2020-07-16
 Portugal hCoV-19/Portugal/IGC4478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20742C A23403G C23635T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491268
 2020-06-09 2020-07-16
 Portugal hCoV-19/Portugal/R1171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4409T C14408T A23403G C27610T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491269
 2020-06-09 2020-07-16
 Portugal hCoV-19/Portugal/R1172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7119T C14408T A23403G G25677T A26019C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491712
 2020-06-09 2020-07-17
 United Kingdom hCoV-19/England/202881376/2020
 C241T C745T C3037T GT5743SY C14408T A23403G GGG28881AAC

EPI_ISL_491713
 2020-06-09 2020-07-17
 United Kingdom hCoV-19/England/202881378/2020
 C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC

EPI_ISL_492020
 2020-06-09 2020-07-18
 Oman hCoV-19/Oman/205042822/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C3743T C5672T G10265A C14408T C16293T G17679T C20132T A23403G C25452T GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_492021
 2020-06-09 2020-07-18
 Oman hCoV-19/Oman/205042904/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T A3546C G10265A C14408T C16293T C17502T A23403G C25452T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_492022
 2020-06-09 2020-07-18
 Oman hCoV-19/Oman/205042917/2020
 ATTAAAGGTTTATACCTTCCCAG1- G24C C241T C3037T G3395T G10265A C14408T C16293T A23403G C27005T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_492023
 2020-06-09 2020-07-18
 Oman hCoV-19/Oman/205042975/2020
 ATTAAAGGTTTATACCTTCCC1- A22T C241T C3037T G10265A C14408T C16293T G18780T T18792C A23403G A25747G C28854T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_492024
 2020-06-09 2020-07-18
 Oman hCoV-19/Oman/205043002/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T G10265A C14408T C16293T C20132T A23403G C25452T GGG28881AAC AGGAGAA29860CTACAGG GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868TCT -29904TGTTTTTC

EPI_ISL_495200
 2020-06-09 2020-07-22
 India hCoV-19/India/CCMB_M359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C346T G2468A C3037T G4354A C6573T C14408T A23403G C25528T C25693T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495201
 2020-06-09 2020-07-22
 India hCoV-19/India/CCMB_M361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3774A G4354A C6573T G13503T C14408T C21304T A23403G C25528T C25693T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495203
 2020-06-09 2020-07-22
 India hCoV-19/India/CCMB_M437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6573T C12439T C14408T C15540T C21648T A23403G C25528T C25904T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495204
 2020-06-09 2020-07-22
 India hCoV-19/India/CCMB_M441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C9286T C9693T C10078T C10815T C14408T C16626T A23403G GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495205
 2020-06-09 2020-07-22
 India hCoV-19/India/CCMB_M446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6573T C14408T G16852T A23403G A23572G C25528T G27890A G27916T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495209
 2020-06-09 2020-07-22
 India hCoV-19/India/CCMB_M465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G124A C241T C313T C3037T C5700A G6476T C9693T C10815T C14408T C16626T C22450T A23403G C25587G GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495211
 2020-06-09 2020-07-22
 India hCoV-19/India/CCMB_M471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3774A G4354A C6573T C14408T C21304T A23403G C25528T C25693T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_497594 MT831224
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2166/2020
 ATTAAAGGTTTA1- C241T C1800T C3037T C11020T C14408T C15933T G16968T T19839C A23403G G25429T C28725T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497595 MT831276
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2167/2020
 C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_497654 MT831454
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2226/2020
 A1- C241T C3037T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497655 MT831192
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2227/2020
 A1- C241T C3037T T5335C C6445T G14186A C14408T G16813A G16852T C17747T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497656 MT831225
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2228/2020
 AT1- C241T C3037T C12513T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497657 MT831352
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2229/2020
 ATTAAAGG1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497660 MT831239
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2232/2020
 AT1- C241T C3037T C14408T G15260T C15933T G16968T T19839C A23403G G26428T C27213T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497661 MT831131
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2233/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T C19151T T19839C A23403G T28705C GGG28881AAC C29250T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497662 MT831254
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2234/2020
 ATTAAAGGTT1- C241T T508C C1059T C3037T G12817T C14408T G16301A T18513C T22054C A23403G T24499C G25563T C27297T C27752T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497663 MT831368
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2235/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G28080A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497664 MT831173
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2236/2020
 C241T C3037T C8334T C14408T C15933T G16968T T19839C A23403G C25710T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497665 MT831279
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2237/2020
 A1- C241T C3037T C6445T C14216T C14408T G15907T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497667 MT831216
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2239/2020
 ATTAAAGGTTT1- C241T C3037T T8559A G8561A T10190C C10507T C14408T C19145T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497668 MT831235
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1060T C3037T C14408T T19104C T19839C A23403G G25445A C28256T GGG28881AAC C29784T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_497669 MT831191
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2241/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G25313A C27110T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497670 MT831380
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2242/2020
 ATTAAAGGTTTA1- C241T C3037T C6445T G8726A G11083T C14408T G16813A G16852T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497671 MT831251
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2243/2020
 ATTAAAG1- C241T C539T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497672 MT831130
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2244/2020
 A1- C241T C3037T C3992T G4288T G4510T C14408T G15907T C15933T T19839C A23403G T25451C G25489T A27489T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497673 MT831177
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2245/2020
 ATTAAAGGTTTAT1- C241T C3037T C3540T A5538T C14408T C14980T G16813A G17058T A23403G T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497674
 2020-06-09 2020-07-24
 United States hCoV-19/USA/WA-S2246/2020
 ATTAAAGGTTTAT1- C241T C3037T C12085T C14408T C15933T G16968T C19688T T19839C A23403G G27676T G28851T GGG28881AAC G29764T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497675
 2020-06-09 2020-07-24
 United States hCoV-19/USA/WA-S2247/2020
 AT1- C241T C3037T C14408T C15933T C16954T G16968T C19688T T19839C A23403G G27676T G28851T GGG28881AAC C29642T G29764T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497676 MT831331
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2248/2020
 ATTAAAG1- C241T C3037T C14408T C15933T G16968T T19839C A21215G A23403G GGG28881AAC G29260T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497677 MT831158
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2249/2020
 A1- C241T T345G C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC G29431T C29784T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_497679 MT831410
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2251/2020
 ATTAAAGGTTTAT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497681 MT831337
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2253/2020
 AT1- C241T C3037T C12513T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497682
 2020-06-09 2020-07-24
 United States hCoV-19/USA/WA-S2254/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C14408T C15933T G16968T C19688T T19839C A23403G G27676T G28851T GGG28881AAC G29764T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497683 MT831150
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2255/2020
 AT1- C241T C3037T C3992T G4288T G4510T C14408T C15933T T19839C A23403G T25451C G25489T A27489T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497684 MT831301
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2256/2020
 ATT1- C241T C3037T C6445T C8160A C11497T C14216T C14408T G16813A A21875C A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497685 MT831409
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2257/2020
 A1- C241T C3037T C14408T C15933T T19839C A23403G T27384C GGG28881AAC C29466T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497686 MT831190
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2258/2020
 AT1- C241T C1060T C3037T T6329C C14408T T19839C A23403G G25445A C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497687 MT831377
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2259/2020
 ATTAAAGGTT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497688 MT831269
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2260/2020
 AT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C G21724T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497689 MT831394
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2261/2020
 ATTAAAGGTTTATACCTT1- C241T C2470T C3037T G6404T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497691 MT831340
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2263/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T G3345T A13444T C14408T C15933T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497692 MT831437
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2264/2020
 ATTAAAGGTTTAT1- C241T C3037T C5020T C14408T C18086T T19839C A23403G GGG28881AAC T29834C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497693 MT831272
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2265/2020
 AT1- C241T A2923G C3037T C7834T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497694 MT831463
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2266/2020
 AT1- C241T C3037T C6285T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497695 MT831381
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2267/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G26428T GGG28881AAC C29784T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_497696 MT831258
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2268/2020
 ATTAAAG1- C241T C3037T T4213C A4372G C14408T C15933T G16968T G19009T T19839C A23403G G24193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497697 MT831453
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2269/2020
 ATTAAAGGTTTAT1- C241T A2161G C3037T C5758T C14408T C16376T T18453C C18877T A23403G T25224C G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497698 MT831253
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2270/2020
 ATTAAAGGTTTAT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497702 MT831359
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2274/2020
 A1- CG241TT C3037T C14408T C18086T T19839C A23403G GGG28881AAC C29247T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_497704 MT831416
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2276/2020
 ATTAAAGGTTTAT1- CG241TT C3037T A7881G C14408T C18086T T19839C A23403G GGG28881AAC C29686T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497705 MT831425
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2277/2020
 AT1- CG241TT C3037T A7881G C14408T C18086T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497706 MT831162
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2278/2020
 AT1- C241T T833C C1059T C3037T C6472T C6548T C7860T C14408T T17108A G22592T A23403G G25537A G25563T C26822T C27964T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497708 MT831442
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2280/2020
 ATTAAAGGTT1- CG241TT C3037T C14408T C18086T T19839C A23403G GGG28881AAC C29247T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497717 MT831249
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2289/2020
 ATTAAAGGTTTATA1- C241T T833C C1059T C3037T C6548T C7860T C14408T T17108A G22592T A23403G G25537A G25563T C26822T C27964T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497718 MT831232
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2290/2020
 ATTAAAGGTTT1- C241T T833C C1059T C3037T C6548T C7860T C14408T T17108A G22592T A23403G G25537A G25563T C26822T C27964T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497719 MT831199
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2291/2020
 ATTAAAGGTTT1- C241T T833C C1059T C3037T C6548T C7860T C14408T T17108A G22592T A23403G G25537A G25563T C26822T C27964T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497720 MT831167
 2020-06-09 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2292/2020
 ATTAAAGGTTTAT1- C241T T833C C1059T C3037T C6548T C7860T C14408T T17108A G22592T A23403G G25537A G25563T C26822T C27964T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_498601
 2020-06-09 2020-07-27
 Singapore hCoV-19/Singapore/703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C6310A C6312A G11083T A12556G C13511T C13730T A15892C C19524T C21789T C23185T C23929T A25915C C28311T AAAAAAAAAAAA29892-

EPI_ISL_499355
 2020-06-09 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168E38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G1440A G2891A C16466T G19670A G28851T AAA29901-

EPI_ISL_499422
 2020-06-09 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16921D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T C15960T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C AAAAAAAAAAAAA29891-

EPI_ISL_500012
 2020-06-09 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A296F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C9924Y C14408T A23403G G25617T GGG28881AAC

EPI_ISL_500013
 2020-06-09 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A298D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C9491T C14408T C22624T A23403G GGG28881AAC

EPI_ISL_507788
 2020-06-09 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T1592Y C2416T C3037T C14408T C23185T A23403G T25392C G25429T A25470G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_508197
 2020-06-09 2020-08-04
 India hCoV-19/India/AR60/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C313T C3037T C14408T C19983T A23403G GGG28881AAC G29868A

EPI_ISL_508198
 2020-06-09 2020-08-04
 India hCoV-19/India/AR61/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C313T G910A C3037T G3056A A4060G G5194T A5887C C11124T C14408T C18570T C19983T A20055G A23403G C23997T G24116A GGG28881AAC T29748C G29868A

EPI_ISL_508200
 2020-06-09 2020-08-04
 India hCoV-19/India/AR63/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T T1947C G2035T C2973T C3037T C8982T C14408T C14741T A16356G C18877T A21137G G21974T C22444T A23403G G25563T C26735T C28854T G28922T G29868A

EPI_ISL_508201
 2020-06-09 2020-08-04
 India hCoV-19/India/AR65/2020
 ATTAAAGGTTTATACCTTCCCA1- C66A C241T C2485T C3037T A4501G C5884T C12672T C14408T A23403G T23470C C26060T C28256A GGG28881AAC G29868A

EPI_ISL_508202
 2020-06-09 2020-08-04
 India hCoV-19/India/AR66/2020
 A1- A4T C241T T1947C C3037T C14408T C18877T C22444T A23403G G25563T C26735T C26801T C28854T G29868A

EPI_ISL_509394
 2020-06-09 2020-08-05
 Singapore hCoV-19/Singapore/784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3261T C6040T C6310A C6312A G11083T C11460T C13730T C15277T C19524T C23520T C23929T C25460T G26828T T27499C C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510868
 2020-06-09 2020-08-07
 Sweden hCoV-19/Sweden/20-52048/2020
 C241T C506T C2306T C3037T C6633T A9193G C14408T C18744T C22712T A23403G C24174T GGG28881AAC

EPI_ISL_511922
 2020-06-09 2020-08-10
 India hCoV-19/India/AR64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2035T C2973T C3037T A8276T T8625G C14408T A16356G C18877T A21137G G21974T C22444T A23403G G25563T C26735T C27684A C28854T G28922T G29868A

EPI_ISL_512302
 2020-06-09 2020-08-11
 Poland hCoV-19/Poland/1157220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T G2001A C2523T C3037T G7798T C14408T C18395T A23403G GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_512303
 2020-06-09 2020-08-11
 Poland hCoV-19/Poland/1157821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T A9121G C14408T G19009T C21145A G23401T A23403G T25191C G28221T GGG28881AAC AGTGTAC29756- TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_514871
 2020-06-09 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2468/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_514872
 2020-06-09 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2469/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_514874
 2020-06-09 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2471/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T T16306C C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514875
 2020-06-09 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2472/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_516415
 2020-06-09 2020-08-20
 North Macedonia hCoV-19/North Macedonia/2819/2020
 ATTAAA1- C241T C313T C3037T C14408T A23403G C25487T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_516416
 2020-06-09 2020-08-20
 North Macedonia hCoV-19/North Macedonia/2851/2020
 ATTAA1- C241T C466T C3037T C6539T C7749T G10265A C10632T C14408T C14786T A15972G C19718T A23403G G25913T T28759C GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_516417
 2020-06-09 2020-08-20
 North Macedonia hCoV-19/North Macedonia/2856/2020
 AT1- C241T C313T C3037T C14408T A23403G G26769T G28361C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517875 MT966138
 2020-06-09 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0985/2020
 ATTAA1- C241T C3037T C14408T T22843C A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_521017 MT969906
 2020-06-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_523254
 2020-06-09 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T6082C T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523413
 2020-06-09 2020-08-26
 Netherlands hCoV-19/Netherlands/NH-EMC-44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A T23084C A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523558
 2020-06-09 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523576
 2020-06-09 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524044
 2020-06-09 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-22388V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C2268T C3037T C11956T C14408T A23403G G27415T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_524045
 2020-06-09 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-22478V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C3037T C3704T A5040G T11457C C14408T T20028C C23121T A23403G GGG28881AAC GAC29868A

EPI_ISL_525813
 2020-06-09 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0456/2020
 A1- C241T C3037T C14408T G20980A A23403G C25886T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525815
 2020-06-09 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0460/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T G20980A A23403G C25886T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_526088
 2020-06-09 2020-09-01
 United States hCoV-19/USA/WA-OHSU-0462/2020
 A1- A169G C241T G2632T C3037T C8818T C14408T C15952T G20980A A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_526089
 2020-06-09 2020-09-01
 United States hCoV-19/USA/WA-OHSU-0464/2020
 ATTAAAGGTT1- C241T C3037T C8818T C14408T C15952T G20980A A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_526284
 2020-06-09 2020-09-01
 Canada hCoV-19/Canada/ON-UHTC_0151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2040T C3037T G3692T C14408T C16887T A23403G G25563T G25593T C28093T G28368A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526882
 2020-06-09 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0766/2020
 ATTA1- C241T C1059T C3037T C10319T C14408T A18211C G19086T C20759T A23403G G25177T G25563T C27964T A29143C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_526883
 2020-06-09 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C10319T C14408T A18211C G19086T C20759T A23403G G25177T G25563T C27964T A29143C C29870A

EPI_ISL_526886
 2020-06-09 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0771/2020
 ATTAAAG1- C241T C1059T C3037T C10319T C14408T A18211C G19086T C20759T A23403G G25177T G25563T C27964T A29143C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_526887
 2020-06-09 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0772/2020
 C241T C1059T C3037T C10319T C14408T A18211C G19086T C20759T A23403G G25177T G25563T C27964T A29143C

EPI_ISL_526888
 2020-06-09 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0773/2020
 A1C C241T C829T C1059T C3037T G6422A C14408T C16260T A23403G C25317T G25563T G26690T C28821A C29077T

EPI_ISL_527693
 2020-06-09 2020-09-04
 United States hCoV-19/USA/MN-CDC-6286/2020
 C241T C539T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527889
 2020-06-09 2020-09-05
 Nigeria hCoV-19/Nigeria/ON705-CV153/2020
 ATTAAA1- C241T C3037T C4002T G7987T G10097A C13536T G14123A C14408T T19015C A23403G C23731T C27970T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_529006
 2020-06-09 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE77497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C3373A A6866W A6869W C9561T C14408T C23114T A23403G A25003G G26199A GGG28881AAC G28904T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_529967
 2020-06-09 2020-09-10
 Indonesia hCoV-19/Indonesia/JI-ITD-12202V/2020
 A1- C241T C3037T C9733T C14120T C14408T C18877T A23403G G25563T C25626T C26735T

EPI_ISL_537527
 2020-06-09 2020-09-16
 United States hCoV-19/USA/CA-UCLA-220/2020
 A1- C241T C3037T T4711C C14408T T17682C A23403G A28032T GGG28881AAC G29440T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_539545
 2020-06-09 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2013593/2020
 C241T C1912T C3037T C3173A T3579C C7303T G11083T C13458T C14408T C17288T C20480T A23403G GGG28881AAC C29296T C29530T

EPI_ISL_539882
 2020-06-09 2020-09-21
 Sweden hCoV-19/Sweden/20-51958/2020
 C241T GGTCTT1598- C3037T C14408T C16887T A23403G C26228T G28361A GGG28881AAC

EPI_ISL_540898
 2020-06-09 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-168524/2020
 ATTA1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_542014
 2020-06-09 2020-09-23
 United States hCoV-19/USA/NMDOH-2020117406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5365T C14408T A23403G C24130T G25563T C29870A

EPI_ISL_542017
 2020-06-09 2020-09-23
 United States hCoV-19/USA/NMDOH-2020117722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C5365T C14408T A23403G C24130T G25563T C29870A

EPI_ISL_542018
 2020-06-09 2020-09-23
 United States hCoV-19/USA/NMDOH-2020117725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C5365T C14408T A23403G C24130T G25563T C29870A

EPI_ISL_542019
 2020-06-09 2020-09-23
 United States hCoV-19/USA/NMDOH-2020117726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1059T C3037T C5365T C14408T A23403G C24130T G25563T C29870A

EPI_ISL_543847
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543848
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6896T C10319T C14408T C16308T C16694T A23403G C23506T G25563T A25986T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543850
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2882/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T G1742A C3037T T9107C C14408T C21597T A23403G C25469T G25563T A28254G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543852
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C10755T C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543853
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T C19019T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543854
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T G16853T A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543855
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C28657T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543857
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11464A C14408T C21627T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543858
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11464A C14408T C21627T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543859
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543861
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A23403G A23947G G25563T T26187C C26469G G26828T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543864
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2945A C3037T T5299G C12885T C14408T C15951T A23403G G24998C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543865
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543866
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10015T C11008T G11083T C14408T G14829T G18873A C23191T A23403G G25563T G26769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543868
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11273T C14408T A23403G A24129G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543869
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8320T C9996T C14408T C22311T C23191T A23403G G25563T G29239T A29396C G29440A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543872
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16877T C20474T A23403G G24998T GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543873
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10450T C14408T A20010T C20474T A23403G C23481T C25047T G26529A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543879
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3738T C14408T A23403G C27434T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543880
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G542A G1954A C3037T C7765T T13797C G14364T C14408T G16336A GA16591TG A23403G C25708T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543881
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2969G C3037T G3437A G4913T G8131T G11083T C14408T C17104T G18412T A23403G G25563T G26389T A26612T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543882
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T A2375C C3037T C14408T C16887T A23403G T23878C C28876T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543883
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543886
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C14408T G17278T C17573T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543888
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543902
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6067C C14408T C16733T G21778A A23403G G25563T C26131G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543903
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A A2568G C3037T G6404T T9742C A11678G C14408T C17639T A23403G C27005T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543904
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-2973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543978
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-3074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C218T C241T C1059T T1907C C3037T C10015T C14408T G14829T C15654T C17463T C23191T A23403G G25563T G26769T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543983
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-3082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14676T G16935T A23403G T24211C G25647T G25690T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543984
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-3083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543985
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-3084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T A23403G G25563T G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543990
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-3093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12076T C14408T A23403G G25563T C25844T G25907T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543991
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-3094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A A2568G C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544038
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-3162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544041
 2020-06-09 2020-09-24
 United States hCoV-19/USA/TX-HMH-3165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10277T C14408T C17639T A23403G C27812T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547539
 2020-06-09 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C3373A C6883T C12249T C14408T G18832A G21724A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551289
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951F55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635T C3037T A11279C T14331C C14408T A15278G A23403G C25350T G28487A C29535T G29764T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551290
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551295
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551302
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951F46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11279C T14331C C14408T A15278G A23403G C25350T T27384C G28487A C29535T G29764T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551309
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951FCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4011C C14408T G21424A A23403G G26918T GGG28881AAC G29290A T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551319
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551326
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951EEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551328
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951FFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22201T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551333
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C6270Y G11083T C14408T C18508T A20268G A23403G G27235A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551334
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9520F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6324G A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551341
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951F0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5812T G6717T C6762T G10097A G12098T C14408T A23403G C23731T C25000T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551347
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951FBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1426T C3037T T9518C C14408T G15743A A23403G GGG28881AAC G29332T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551348
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95232B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G315A C3037T T4885C G11230T C14408T G21724T C22326T A23403G G23587C G24781A GGG28881AAC G29033T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551350
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9522D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G922T C3037T G5704T C6541T C13431T C14408T A23403G G26185T GGG28881AAC CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_553390
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A87F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G24815C A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553631
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9520AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553636
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9521A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627Y C3037T A3111R G10097A C12231Y C14408T A23403G C23731T G25302T C25513T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553639
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95219A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3787T A9433T G10265A C11653T C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553641
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95207F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553642
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95218B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A6375G C9438T A10948G C14408T C21736T A23403G G24926T C25665T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553643
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95222E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2708T C3037T C3429T C6312A C8660T T9322C C10626T A10948G G12917A C14408T G22316A A23403G C26010T GGG28881AAC G29703T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553647
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1187G C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553651
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9520D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T5644C T6492Y T7357C T11418C C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553656
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553660
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9521D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G A28691C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553662
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95223D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T A8450G G9473A G10097A C14408T C14605T G17721T C18032T C21614T TTA21991- A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553666
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9521E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G A23403G G28378T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553675
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9521F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1862T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T G27375T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553683
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9520CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553687
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95225B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1862T C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T G27375K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553688
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9521B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C620T C3037T C13730T C14408T T16993Y C21575T A23403G A25296G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553698
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553879
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-9578DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2144T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553880
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-95771B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C11758T C14408T C18788T T19839C C23230T A23403G -25700CCC C28171T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553893
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C13708A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553894
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T G6839A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553897
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C4158T G5704T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553905
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A6068G G11083T C14322T C14805T G19252T C19374T C20736T C23707T G26144T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553921
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G8353A T9349C G10097A C12369T C13536T G13897T C14408T G17418A G20102T A23403G C23731T T24184C T27720C GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553930
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95266E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553934
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553935
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9525AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815T C3037T A3569G G3849T A6211G A8659G C14408T C19488T A23403G GGG28881AAC G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553939
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-95754E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553944
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95259E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553953
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95272F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G8353A T9349C G10097A C12369T C13536T G13897T C14408T G17418A G20102T A23403G C23731T T24184C T27720C GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553957
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C10369Y C14408T C15848T G19254T T19893C G21295T A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553962
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95269B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G24815C A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553963
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3961T C14183T C14408T G15894T T19893C A23403G G25523T G25785T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553981
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6195T G10097A C14408T C16045T A23403G C23731T C25702T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553987
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957C2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1825T C3037T A4894C C11674T A14266G C14408T C15960T A23403G A23416T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554006
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9526D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554015
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T A1103T C3037T C14408T A20268G C22482T A23403G A27156G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554028
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C841T C1714T C3037T C8092T C14408T G18816T A20268G C21772T A23403G C28854T A29089C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554038
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95265F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554041
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G463A C3037T C3373A T3615C C6539T C11442T C13225T C14408T C14688T G15535T C16887T A23403G C27999T GGG28881AAC C29625T T29728C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554042
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-95772A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C9438T C14408T A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554054
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-9578BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T C14408T C16173T C17733T C19140T C19374T A23403G G26620C A28211G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554056
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9526C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6532T C14408T T15648C A23403G GGG28881AAC C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554057
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-9577EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C841T C1714T C3037T C5724Y C8092T C14408T G18816T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554060
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6552C C6983T A8088G C14408T C19170T G19509A A23403G G27676C G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554064
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9525E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T A15189C C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554073
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C9803A A10786G C10833T C14408T C18687T A23403G C25844T T27811C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554080
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3787T A4926C C14408T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554137
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-956E53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4893Y C14408T A23403G C24624Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554180
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-956F05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4624G C14408T C18877T C20480T A23200G A23403G G24197T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554200
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957B3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A18642T G19398T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554223
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957AC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7561A C14408T C21952T C23086T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554255
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957AB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3287A G6653T T10573A C14408T C16289T C18508T A23403G G25249T G25429T C29445T C29518T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554261
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-956CD1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T -11075TTT G11083T C14408T A16615G G16861T C20844T A23403G G25563T C25688T C26882T T27539C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554636
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957DCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798C C10833T C14408T T15723C C19374T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554641
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-95853E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G19894A G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554647
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957F9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11095T G14202T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554659
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-958774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2583T C3037T C9430T G10097A C14408T C17012T A23403G C23731T G28580T GGG28881AAC G29703T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554671
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957F40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3622Y C4099T C4391A C7594T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554672
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-958792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T G2585T C2644T C3037T C7732T C10252T C14408T A23403G G23948T G25687T C26313T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554673
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957E16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10757W C14408T A16302G G19398T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554682
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-958273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T A20055G A23403G C23731T G23868T G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554700
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-958413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554701
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-9582DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A17202R A20268G G22201T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554705
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-958370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T G13520T C14408T T15978C T20109C A23403G C27804T G27967T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554719
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-958246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10277T C14408T C16596T G17572T A20255G C20844T A23403G C24223T G29755T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554720
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-958282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4099T C4391A C7594T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554744
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-9581A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C841T C1714T C3037T C8092T C14408T G18816T A20268G G21718K C21772T G21800K A23403G C28698Y C28854T A29089C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554762
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-957E25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G GGG28881AAC C29445T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554768
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-9586A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554770
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-9581B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T T18731C C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554774
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9586C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C775T C3037T C9438T G11083T C14408T G21160A A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554787
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-958361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T A6597G A8628G A10323G C14408T C21742T A23403G GGG28881AAC G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554790
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-9586B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554821
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-9583BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C4158T G5704T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554831
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-9586FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C2252A C3037T G11243T C14408T T18723C A20268G A23403G G25720T C27532T C28854T C29085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554844
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-95803D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5497T C14408T G17964T A20268G C20270T C22295T A23403G C25318T A25589R C26022T C28341T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554855
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-958747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T -11075TTT G11083T GG12268RS C14408T A16615G G16861T C20844T A23403G G25563T C25688T C26882T T27539C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555317
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95475A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C884Y T1683C C3037T C3768Y C6681T C7162T C10626T C14408T G15438T C19164T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555318
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9548FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G840A C3037T C11289T C14408T T15051C G17338T C17913T A20255G C20698A A23403G T23443C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555321
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95480C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3787T A4926C C14408T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555322
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9548B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323A C14408T C16859T C20555T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555324
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14408T G15438T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555335
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9546B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14408T G15438T C19343T A20268G A23403G C24026T C25904T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555345
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9545C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12070T C14408T C19032T A23403G T23849C G24933T G25218T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555348
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9546C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A23938G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555364
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C683Y C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G T23866Y T24958Y C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555370
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G17035A A20268G C22482T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555416
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95472D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323A C14408T C20555T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555420
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9548DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555424
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096Y T9070C G10097A C10833T T13216G G13564A C14408T T18488C G20014T A23403G C23731T T24887C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555426
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9547F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3787T A4926C C14408T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555427
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T G23401K A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555430
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1683C C3037T C6681T C7162T C10626T C14408T G15438T C19164T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555453
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2583T C3037T TTACAC8592- C9430T G10097A C14408T C17012T A23403G C23731T G28580T GGG28881AAC G29703T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555458
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555467
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95471E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6258Y C9502M C14408T A23403G GGG28881AAC AGGCCACGCGGAGT29735- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555476
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9547A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555494
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555529
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AD8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C11919T C14408T A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555543
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AD70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1367G C3037T C14408T C18877T A23403G G24197T G25563T C26151T C26735T C27143T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555559
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7397C C8090T G10905A T11932C C14016T C14408T A21323G A23403G C23895T C24904T C25578T T26318C G28373T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555581
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2675T C3037T C14408T C19102T G22427A A23403G G27754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555617
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-95AD52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555622
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9524CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A G5150T C13694Y C14408T C14688T T21670G A23403G GGG28881AAC G28908T C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555632
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20425G G21641T A23403G C25945A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555636
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555658
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9523A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2675T C3037T C14408T C19102T G22427A A23403G G27754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555678
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95ABD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555709
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5653C C14408T A23403G C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555711
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T C16750T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555735
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558242
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-55D47C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9223T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558322
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-55949E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14120T C14408T G20041A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558325
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-559DC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C T11078C C14408T A23403G C26029A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558353
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-56C4E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558374
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-56C53B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G GGG28881AAC C29445T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559277
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/MILK-4BEEB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9979T A10323G C14408T A20268G G21778A A23403G G29195T C29272T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559439
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AD9CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559452
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A5AA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559468
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A92C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25217T C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559472
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A931B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559474
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A94AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559479
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A4E88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559487
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4ADC76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559496
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A6044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12513Y C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559497
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A92F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127K C241T T1603Y C3037T C9430Y C14408T C17634Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559499
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A5DA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559509
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A5B53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6985R A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559513
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A922D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25217T C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559515
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A9339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559516
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A5EB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21123T A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559521
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A628A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559523
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A5E4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C18568T A19650G C21789T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559552
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A6008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6324G A9433T G10265A C14408T A19650G A23403G C25549Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559555
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A5A92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC G28980K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559556
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A5C14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559568
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A519D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559569
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AD863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559588
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A9551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C21145Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559589
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A924B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127K C241T T1603Y C3037T C9430Y C14408T C17634Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559592
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4ADBB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559606
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A635A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559613
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A631E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4668Y A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559615
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A9454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9430Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559617
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A94FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559620
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A91C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559621
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A5889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC G28980K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559626
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A5B71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559632
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AD915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559633
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A5EE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559634
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A4D6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559643
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4ADB00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G A28691C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559654
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AD793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559655
 2020-06-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A93C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2365Y C3037T C7086T C8334Y C14408T A14791T C17410T A23403G C25658Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT967945
 2020-06-09 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6286/2020
 C241T C539T C1059T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_471421
 2020-06-10 2020-06-21
 Romania hCoV-19/Romania/Iasi-296512/2020
 C241T C2268T T3142A G3216A T6605A T11236G G11241A C14408T A14597G T22126G A23403G A25286T

EPI_ISL_472414
 2020-06-10 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111E4D/2020
 G199T C241T C560T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC

EPI_ISL_473493
 2020-06-10 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B4ADF/2020
 C241T C3037T T3055C C3738T G10097A C10868T C13426T C14408T C18131T G19180A A22107G A23403G C23731T G28580T GGG28881AAC

EPI_ISL_473496
 2020-06-10 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B4B09/2020
 C241T C3037T C3738T G10097A C10868T C13426T C14408T C18131T G19180A A22107G A23403G C23731T G28580T GGG28881AAC

EPI_ISL_473498
 2020-06-10 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B4B36/2020
 C241T C3037T C3738T G10097A C10868T C13426T C14408T C18131T G19180A A22107G A23403G C23731T G28580T GGG28881AAC

EPI_ISL_473499
 2020-06-10 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B4B45/2020
 C241T C3037T C3738T G10097A C10868T G11083T C13426T C14408T C18131T G19180A A22107G A23403G C23731T T25319G G28580T GGG28881AAC

EPI_ISL_473500
 2020-06-10 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B4B63/2020
 C241T C3037T C3738T G10097A C10868T C13426T C14408T C18131T G19180A A22107G A23403G C23731T G28580T GGG28881AAC

EPI_ISL_476492
 2020-06-10 2020-06-25
 Senegal hCoV-19/Senegal/62365/2020
 C241T C1415T C3037T G13471A C14408T A20268G A23403G G28703C C28833T

EPI_ISL_476493
 2020-06-10 2020-06-25
 Senegal hCoV-19/Senegal/62368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T23287C A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_478394
 2020-06-10 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A0C68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A489G C3037T T5465C G6387A C14408T G21624T A23403G G24102A C24138T AA25800TT GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478395
 2020-06-10 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A0C95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C1376T C1915T C3037T C5310T G6476T C8140T G10097A G11083T T13216G C14408T C18606T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479455
 2020-06-10 2020-06-30
 United Kingdom hCoV-19/Wales/PHWC-165378/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C

EPI_ISL_480675
 2020-06-10 2020-07-02
 Australia hCoV-19/Australia/VIC1951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3665K C12036T C14408T C15235T C18877T A23403G G25563T C26735T G27915T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_480678 MT745658
 2020-06-10 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC1954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3250T C5301T T8737C C14408T C18877T A23403G G25563T C26735T C28657T G28975T C29274T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480749 MT745718
 2020-06-10 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18555T G22992A G23401A A23403G T24736Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_481185
 2020-06-10 2020-07-02
 India hCoV-19/India/ILSCV34933/2020
 C241T C3037T G3644A C14408T C16470T A23403G GTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29690-

EPI_ISL_481186
 2020-06-10 2020-07-02
 India hCoV-19/India/ILSCV34939/2020
 C241T C3037T C14408T C16470T T18144C A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481189
 2020-06-10 2020-07-02
 India hCoV-19/India/ILSCV35317/2020
 C241T C3037T C8917T G9389A C14408T G18412T C19374T G21422A A23403G GGG28881AAC G29645T

EPI_ISL_481190
 2020-06-10 2020-07-02
 India hCoV-19/India/ILSCV35333/2020
 C241T C3037T C8917T G9389A C14408T C19374T A23403G GGG28881AAC G29645T

EPI_ISL_481191
 2020-06-10 2020-07-02
 India hCoV-19/India/ILSCV35350/2020
 C241T C3037T G7010T C8917T G9389A C14408T G18412T C19374T G21422A A23403G GGG28881AAC G29645T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481192
 2020-06-10 2020-07-02
 India hCoV-19/India/ILSCV35351/2020
 C241T C3037T C8917T G9389A C14408T C19374T A21134G A23403G GGG28881AAC G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481193
 2020-06-10 2020-07-02
 India hCoV-19/India/ILSCV35353/2020
 C241T C3037T C8917T G9389A C14408T C19374T A23403G GGG28881AAC G29645T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481194
 2020-06-10 2020-07-02
 India hCoV-19/India/ILSCV35366/2020
 C241T C3037T C8917T G9389A C14408T G18412T C19374T G21422A A23403G GGG28881AAC G29645T

EPI_ISL_481195
 2020-06-10 2020-07-02
 India hCoV-19/India/ILSCV35376/2020
 C241T C3037T C8917T G9389A C14408T C19374T A23403G GGG28881AAC G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_481196
 2020-06-10 2020-07-02
 India hCoV-19/India/ILSCV35456/2020
 C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481197
 2020-06-10 2020-07-02
 India hCoV-19/India/ILSCV35457/2020
 C241T C3037T C14408T A23403G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481198
 2020-06-10 2020-07-02
 India hCoV-19/India/ILSCV35461/2020
 C241T C3037T C14408T G21123T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481199
 2020-06-10 2020-07-02
 India hCoV-19/India/ILSCV35475/2020
 C241T C3037T C14408T G21123T A23403G G24095T G25290T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_481200
 2020-06-10 2020-07-02
 India hCoV-19/India/ILSCV35476/2020
 C241T C3037T C14408T A23403G GTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29690-

EPI_ISL_482882
 2020-06-10 2020-07-06
 France hCoV-19/France/OCC-24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T C3784T C5544T G8371T C14408T G16075T A17192C A23403G C23635T G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_482883
 2020-06-10 2020-07-06
 France hCoV-19/France/OCC-25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T C3784T G7472A G8371T C14408T G16075T A17192C A23403G C23635T G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_482884
 2020-06-10 2020-07-06
 France hCoV-19/France/OCC-26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1135A C2416T C3037T C3784T C5544T G8371T C14408T A15553G G16075T A17192C A23403G C23635T G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_482888
 2020-06-10 2020-07-06
 France hCoV-19/France/OCC-30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2198A C2416T C3037T C3784T G7472A G8371T G9191T G11083T C14408T G16075T A17192C A23403G C23635T G25563T C29120A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_483573
 2020-06-10 2020-07-07
 Spain hCoV-19/Spain/HUB-52580776/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1377T C3037T A6833C C14408T A20268G A23403G C27476T A29827T GCTA29830- CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_483652
 2020-06-10 2020-07-08
 Switzerland hCoV-19/Switzerland/150012_411_F05_plus/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A3121R T3144K C5784Y C7299T C14408T C18877T A23403G C25207T C25521T G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483653
 2020-06-10 2020-07-08
 Switzerland hCoV-19/Switzerland/150014_413_H04_plus/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C999Y C3037T C3738T T7035Y G11083K A13852R C14408T A20742C A23403G T24097K C28341M GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_484229
 2020-06-10 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6CE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484230
 2020-06-10 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6D20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T A9997C G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484231
 2020-06-10 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6D3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T C19402T G22199T A23403G C23731T G25563A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484232
 2020-06-10 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6D4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484453
 2020-06-10 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C54DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T T4714C G10097A C13536T C14408T A23403G C23731T T25285C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484475
 2020-06-10 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C8A8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T T4714C G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484836 MT750046
 2020-06-10 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T T19839C A23403G C23707T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484854 MT750063
 2020-06-10 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1185T C2594T C3037T C4582T C11102T T14343C C14408T A20268G A23403G T23485C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486852
 2020-06-10 2020-07-11
 India hCoV-19/India/UN1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- G11083T C13730T A20364R A21251R C23929T C28311T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486854
 2020-06-10 2020-07-11
 Romania hCoV-19/Romania/ROSV_12646/2020
 TTAAA2CAGTG C241T A2140G C3037T G8516A T9697C C11866T C14408T A20268G A23403G A29827T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830T

EPI_ISL_489852 EPI_ISL_491048
 2020-06-10 2020-07-14
 Romania hCoV-19/Romania/ROSV_12723/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G1439T C3037T G6454T T9697C T10495C G10618A C14322T C14408T T17137C C19524T A20268G A23403G G28077A A29827T TGCT29829- CA29838TC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_490203
 2020-06-10 2020-07-15
 Spain hCoV-19/Spain/HUB-50378855/2020
 ATTAAAGGTTTATACCTTCC1- CA21TT C241T C1377T C3037T C14408T A20268G A23403G C27476T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_492025
 2020-06-10 2020-07-18
 Oman hCoV-19/Oman/205043071/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A5311G G10265A C14408T C16293T C20132T A23403G C25452T G28580T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_494006
 2020-06-10 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1664DE/2020
 ATTAAAGG1- C241T C1385T A1547W C3037T C9438T C14408T A23403G GGG28881AAC G29777T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494045
 2020-06-10 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-16681E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C775T C3037T C9438T C14408T G21160R A23403G GGG28881AAC G29777T AAAAAA29898-

EPI_ISL_494052
 2020-06-10 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C775T C3037T C9438T C14408T C18463T G21160R G22484A A23403G GGG28881AAC G29777T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494073
 2020-06-10 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166A54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547D C3037T C9438T C14408T G21160R A23403G GGG28881AAC G29777T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495212
 2020-06-10 2020-07-22
 India hCoV-19/India/CCMB_M489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C9693T C10815T C14408T C16626T C19170T A23403G GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495213
 2020-06-10 2020-07-22
 India hCoV-19/India/CCMB_M499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C3045T G4181A A6081G C6312A G11083T G11534A C13730T T18696C C23929T C28311T G28980T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495217
 2020-06-10 2020-07-22
 India hCoV-19/India/CCMB_M588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4276T G4354A C6026T C6573T C14408T A23403G C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_496960 MT831861
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2328/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C6445T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496961 MT831698
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2329/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T G15260T C15933T G16968T T19839C A23403G G26428T GGG28881AAC C29750G C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496963 MT831613
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2331/2020
 AT1- C241T C1449T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G C28708T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_496972
 2020-06-10 2020-07-24
 United States hCoV-19/USA/WA-S2340/2020
 ATTAAAG1- C241T C3037T C14408T C15933T G16968T C19688T T19839C A23403G G27676T G28851T GGG28881AAC G29764T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496993
 2020-06-10 2020-07-24
 United States hCoV-19/USA/WA-S2361/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496994 MT831776
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2362/2020
 ATTAAAGGTTT1- C241T C2470T C3037T G6404T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496995 MT831774
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2363/2020
 AT1- C241T C3037T C6445T C14216T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497003 MT831809
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2371/2020
 ATTAAAGGTTT1- C241T C2470T C3037T G6404T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497004 MT831813
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2372/2020
 ATTAAAG1- C241T C3037T C6445T C11497T C14216T C14408T G16813A A21875C A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497005 MT831546
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2373/2020
 A1- C241T C3037T C4534T G8075A G10996T C11956T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497658 MT831220
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2230/2020
 ATTAAAGGTTTATA1- C241T C3037T C10815T C14408T C15933T G16968T T19839C A21127G A23403G G25445T GGG28881AAC C29784T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_497690 MT831361
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2262/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497699 MT831423
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2271/2020
 ATTAAAGGTTTA1- C241T C3037T C7420T G8179T C14408T C19586T A23403G G26754T C27630T G28456A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497700 MT831237
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2272/2020
 A1- CG241TT A1829G C3037T C14408T C18086T T19839C A23403G G27430A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497707 MT831439
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2279/2020
 ATT1- C241T A2161G C3037T C5758T C14408T C16376T T18453C C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_497709
 2020-06-10 2020-07-24
 United States hCoV-19/USA/WA-S2281/2020
 ATT1- C241T C3037T G7393T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497710 MT831145
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2282/2020
 C241T C2937T C3037T G4510T C14408T C15933T T19839C T22690C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497711 MT831122
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2283/2020
 A1- C241T T1477A C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22208T C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497712 MT831354
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2284/2020
 ATTAAAGGTTTAT1- C241T C3037T T5335C C6445T G14186A C14408T G16813A G16852T A20223C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497713 MT831427
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2285/2020
 ATTAAAGGTTT1- C241T C3037T G7393T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497714 MT831137
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2286/2020
 AT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22208T C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_497715 MT831141
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2287/2020
 A1- C241T C3037T C14408T C15933T T19839C A23403G C23683T C26645T C26833T GGG28881AAC G29692T C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_497716 MT831418
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2288/2020
 A1- C241T C3037T C6445T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497721 MT831428
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2293/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497722 MT831433
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2294/2020
 ATTAAAGGTTTAT1- C241T C1489A T2114C C3037T C6445T C14408T G16813A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497723 MT831424
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2295/2020
 ATTAAAGGTTT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497724 MT831304
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2296/2020
 AT1- C241T C3037T C11572T G12067T C14408T C15933T G16968T T19839C A23403G G27556T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497725 MT831284
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2297/2020
 ATTAAAGGTTTAT1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC G28985A C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497726 MT831457
 2020-06-10 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2298/2020
 ATTAAA1- C241T A2161G C3037T C5758T C14408T C16376T T18453C C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_499811
 2020-06-10 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A29AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3228G AAC3632- C6633T C14408T G17014T A23403G C23481T C25777T C26947T G27746T C28725T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500566
 2020-06-10 2020-07-29
 Singapore hCoV-19/Singapore/752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4893T C6310A C6312A G11083T A11228G C13730T C19524T C23185T C23929T A24915T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500567
 2020-06-10 2020-07-29
 Singapore hCoV-19/Singapore/753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4893T C6310A C6312A G11083T A11228G C13730T C19524T C23185T C23929T A24915T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507778
 2020-06-10 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC20992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T A5011M C14408T C16393T A23403G G25563T T27071G C28893T G29540K TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_507780
 2020-06-10 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC20994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C715Y C1059T C2401T C3037T G4255A C11916T C14408T G16957T G17334S C18086T C18555T C22088T A23403G A23586G G25563T C27845T C29218Y AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_507786
 2020-06-10 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C715Y C1059T G1157R C2401T C3037T G4255A C11916T C14408T G16957T C18086T C18555T C22088T A23403G A23586G G25563T C27845T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_508315
 2020-06-10 2020-08-04
 India hCoV-19/India/IB36/2020
 ATTA1- A30T C241T C1218T C3037T C8917T C14408T C17373T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508487
 2020-06-10 2020-08-04
 India hCoV-19/India/S98/2020
 ATTA1- C241T C3037T G3251A C7390T C10039T C14408T C17639T C21409T A23403G G23593T G24095T A24298C G28221T G29868A

EPI_ISL_508709 MT834664
 2020-06-10 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0506/2020
 A1- C241T C3037T C12412T T14313C C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_508711 MT834666
 2020-06-10 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10188T C14408T T22220C A23403G T24982C G25563T C27964T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_511824
 2020-06-10 2020-08-08
 United States hCoV-19/USA/CA-IGI-0070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A6716G G11596T C14408T A23403G GGG28881AAC G29781T A29903-

EPI_ISL_511837
 2020-06-10 2020-08-08
 United States hCoV-19/USA/CA-IGI-0083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C2668T C3037T C14408T T19584C A23403G G25563T G29715T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_511928
 2020-06-10 2020-08-10
 India hCoV-19/India/MW39/2020
 ATTAA1- C241T C3037T C5884T C12809T C14408T C19186T G23401T A23403G C27442T C27493T A28254T GGG28881AAC G29868A

EPI_ISL_511976
 2020-06-10 2020-08-10
 United Kingdom hCoV-19/England/BRIS-13259C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C673Y C1441T C3037T G7873T C9365T G10097A C12499M C13372T C14408T C19524T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512407
 2020-06-10 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D166E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G14310T C14408T T18398C A23403G G24781T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514163 MT890296
 2020-06-10 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0817/2020
 A1- T13C C241T C1059T C3037T C14408T C15352T G18186T G20102T G20397T C22564T A23403G G25563T C25777T C29614T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514873
 2020-06-10 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2470/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T A29871G AAAAAAAAAAAAAAAA29888-

EPI_ISL_514876
 2020-06-10 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2473/2020
 ATTAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T A29866G C29870A

EPI_ISL_514877
 2020-06-10 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2474/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514878
 2020-06-10 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2475/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T A5570G C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514879
 2020-06-10 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2476/2020
 ATTAAA1- C241T C1059T T1831C C3037T C7528T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514880
 2020-06-10 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2477/2020
 ATTAAAGG1- C241T C829T C1059T C3037T C11916T C14408T C16650T A20675T C22450T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_516418
 2020-06-10 2020-08-20
 North Macedonia hCoV-19/North Macedonia/2907/2020
 ATTAAA1- C241T C1342T C3037T C7765T C14408T C17690T C18877T A23403G G25563T T27591G G28851C G29081T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_516419
 2020-06-10 2020-08-20
 North Macedonia hCoV-19/North Macedonia/2979/2020
 ATTA1- C241T C313T A2923G C3037T C7267T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_516420
 2020-06-10 2020-08-20
 North Macedonia hCoV-19/North Macedonia/3017/2020
 C241T C1170T C3037T C6762T C14408T G17058T T18132C G23401T A23403G GGG28881AAC C29167T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_521906 MT969382
 2020-06-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522350
 2020-06-10 2020-08-25
 Belgium hCoV-19/Belgium/rega-0710751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C24726T T28144C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522401 MT946890
 2020-06-10 2020-08-25
 United States SARS-CoV-2/human/USA/AK-PHL465/2020
 ATTAAAGGTT1- C241T C2143T C3037T C6336T C14408T A20268G G21800T A23403G G25244T C29370G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_523267
 2020-06-10 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T6082C T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523493
 2020-06-10 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T G4207T C7732T C11109T G12794A C14408T A23403G G25563T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523494
 2020-06-10 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T G4207T C7732T C11109T G12794A C14408T A23403G G25563T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525816
 2020-06-10 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0466/2020
 ATTA1- C241T C3037T C8818T C14408T C15952T G20980A A23403G AAAAAAAAAAAAA29891-

EPI_ISL_525817
 2020-06-10 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0468/2020
 AT1- C241T T833C C1059T C3037T G13435A C14408T C17734T T21594C A22753G C23086T A23403G G25563T C27964T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_526575 MT956706
 2020-06-10 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C601T C3037T G4904T C8389T C8950T C9936T C14408T G17122T C22432T A23403G G25563T G27915A C29272T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_526927
 2020-06-10 2020-09-02
 United States hCoV-19/USA/VA-DCLS-1044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A3133C C14408T T15096C A23403G C25517T G25563T C26873T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_526930
 2020-06-10 2020-09-02
 United States hCoV-19/USA/VA-DCLS-1047/2020
 ATTAAAGGTTT1- C241T C1059T C3037T T3172C G11083T C14134T C14408T G21624C A23403G G25563T C25693T T27384C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_526931
 2020-06-10 2020-09-02
 United States hCoV-19/USA/VA-DCLS-1048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T9172C A10948G C14408T A23403G C25553T C26527T G26730T G28287A GGG28881AAC

EPI_ISL_527898
 2020-06-10 2020-09-05
 Nigeria hCoV-19/Nigeria/OY592-CV167/2020
 ATTAAA1- C241T C1059T A1876G C3037T C3042T C10775T C14408T T15420C T16456C C17012T T23308C A23403G G25563T C27964T CTA28896- G29645T

EPI_ISL_528663
 2020-06-10 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A4364C C6040T A13712G C14408T G21641T A23403G G25563T G29868A C29870A

EPI_ISL_528664
 2020-06-10 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1056/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T T27733C C29870A

EPI_ISL_528665
 2020-06-10 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A34G C241T C1059T C1917T C3037T C14408T A23403G G25563T C29870A

EPI_ISL_528666
 2020-06-10 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1060/2020
 AT1-G C241T C3037T T9172C A10948G C14408T A23403G C24130T G26730T C27879T GGG28881AAC C29578A

EPI_ISL_528667
 2020-06-10 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1061/2020
 AT1- C241T C1059T G1085T C3037T A3245G G3340T C14408T G18583T A23403G G25563T C27752T

EPI_ISL_528668
 2020-06-10 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1064/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G5253A C10319T C14408T C15197T A20183G A23403G G25563T G25855T C27092T T27692C C27964T C28849T G28851T

EPI_ISL_528669
 2020-06-10 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1067/2020
 ATTAAAG1- T10G C241T C3037T T6294C C8664A G8851A C14408T C21711T A23403G T23716C A25505C G28077T GGG28881AAC C29870A

EPI_ISL_528670
 2020-06-10 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1071/2020
 ATTA1- C241T C1059T C3037T T5925C G6422A C14408T C16260T A23403G C25317T G25563T G26690T C28821A C29870A

EPI_ISL_528671
 2020-06-10 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1404T C3037T T6294C C8664A G8851A C14408T A23403G T23716C A25505C G28077T GGG28881AAC C29870A

EPI_ISL_528674
 2020-06-10 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1076/2020
 ATTAAAGGTT1- C241T AAGTCATTT686- C1059T C3037T C4230A C14408T T16977C A23403G C23430T A23985G C24198T C25318T G25563T

EPI_ISL_528675
 2020-06-10 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1077/2020
 ATTAAAGGT1- T11G C241T C3037T A12886G C14408T C18877T C21575T A22503T A23403G G25563T G27870T

EPI_ISL_528676
 2020-06-10 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T AAGTCATTT686- C3037T T3529C C8664A G8851A G11083T C14408T A23403G A25505C G26779T GGG28881AAC C29870M

EPI_ISL_528677
 2020-06-10 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T9172C C10623T A10948G C14408T A23403G A26612T G26730T C27059T GGG28881AAC

EPI_ISL_535306 MT997950
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1265/2020
 C241T G376T C1059T C1758T G2447T C3037T G4105A C10319T C14408T A23403G G25563T C27964T C28253T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535307 MT997951
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1266/2020
 C241T G376T C1059T C1758T G2447T C3037T T3070C C10319T C14408T A23403G C25513T G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535310 MT997954
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1269/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535311 MT997955
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1270/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535312 MT997956
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1271/2020
 C241T G376T C1059T C1758T G2447T C3037T T4264K C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535313 MT997957
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1272/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535318 MT997962
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1277/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T C19554T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535322 MT997966
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1281/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535323 MT997967
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1282/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535326 MT997970
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1285/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C C29679T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535328 MT997972
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1287/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T C16887T A23403G C24748T G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535334 MT997978
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1293/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535337 MT997981
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1296/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535338 MT997982
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1297/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C26681T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535339 MT997983
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1298/2020
 C241T G376T C1059T C1758T G2447T C3037T C4068T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535340 MT997984
 2020-06-10 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1299/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_537206
 2020-06-10 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B30FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2937Y C3037T G8179T A8821G C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541082
 2020-06-10 2020-09-22
 Czech Republic hCoV-19/Czech Republic/NRL_7000/20
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3874T G5830A G6894T C8352T C8890T C9344T C14408T A23403G T24634C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541726
 2020-06-10 2020-09-23
 India hCoV-19/India/MH-NIV-57622/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C8917T G12031A C14408T A23403G GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541727
 2020-06-10 2020-09-23
 India hCoV-19/India/MH-NIV-57774/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C14408T A23403G C28153T GGG28881AAC G28899C A29491G G29690T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541728
 2020-06-10 2020-09-23
 India hCoV-19/India/MH-NIV-58210/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C44T C241T C313T C3037T C4918T C5700A C6429T A12393G C14408T A23403G A28052G GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_543007
 2020-06-10 2020-09-23
 United States hCoV-19/USA/TX-HMH-3544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T G7798T T11134C C14408T A18535G C19011T T23245G A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543023
 2020-06-10 2020-09-23
 United States hCoV-19/USA/TX-HMH-3561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543969
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C4931A G9479T T12706A C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543970
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4694A T8477C G12514T C14408T G19563T C22450T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543972
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543973
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T C13860T C14408T G16236A A16978G C21575T A23403G C25517A G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543977
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C1059T C3037T C3784T C12452A C14408T A23403G G25563T G26840A A28959G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543979
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T G7798T T11134C C14408T A18535G C19011T T23245G A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543982
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6067C C14408T C16733T G21778A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543987
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T T5406G T8296C C14408T C18877T A23403G T25520C G25563T G28027T G28690T G28881T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543989
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543993
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A G26690A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543998
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1911T C3037T C6501T C6843T C9943T T10084C C10319T G13156A C14408T T17353C C17372T A23403G G25563T G25641T A26535C G27364T C27964T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836T

EPI_ISL_543999
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13680T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544009
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G213T C241T C1059T G1820A C3037T C14408T G15452T G17151T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544017
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544023
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1885C C3037T A10323G G11083T C14408T T15276A A23403G G25563T G28842T C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544024
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2995T C3037T G6352T C14408T C19011T C21057T C21575T A23403G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544028
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1150T C3037T G4399T G13459T C14408T G17808T A23403G G25563T G26152T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544030
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C14408T C15763T A23403G G25563T C27964T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544033
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1489T C3037T A6925G C14408T A20268G C23248T A23403G C24463T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544034
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1150T C3037T G4399T G10396T G11634T C14408T G17808T A23403G G25563T G26152T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544035
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15438T G22484T A23403G G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544036
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15438T G22484T A23403G G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544037
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544039
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5290C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544040
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T C21575T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544044
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544055
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544056
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544121
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544126
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544127
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A A2568G C3037T T9742C C14408T A15124G C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544130
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544160
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544207
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T T17137C A23403G G25563T C25584T C27964T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544218
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T C9521A C14408T A20268G A23403G C24904T C28854T G29422T A29567G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544220
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T A15334G C17069T T19497C A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544221
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C14408T A23403G G25088T G25563T C26750T C28890T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544223
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3738T C14408T A23403G A23416G C27434T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544224
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544226
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1102T C3037T A12410G C14408T C14937T G21624T A23403G T25990A A26114G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544235
 2020-06-10 2020-09-24
 United States hCoV-19/USA/TX-HMH-3541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T A23403G G25563T G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551291
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951DE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T C18681T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551293
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951E0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C534T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551299
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951B60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17016C G20274T G20940T C23277T A23403G C25300T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551301
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951B9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6825G G11083T C14408T C17118T T20526C A23403G GGG28881AAC C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551304
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951D6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G A23403G G24764A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551305
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951DD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T C18681T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551308
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951B33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17016C G20274T G20940T C23277T A23403G C25300T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551311
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951EA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G A23403G G24764A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551314
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951D97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C9565T C14408T C14925T G16245T G22094A A23403G C23638T C27684T C28399T GGG28881AAC G28899T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551316
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951BE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551317
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951CC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G A28691C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551320
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951EB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G A23403G G24764A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551323
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951C5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551325
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951FA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7397C C8090T C14408T A21323G A23403G C23895T C24904T C25578T T26318C GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551330
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951D88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7291G C9979T T10513C C14408T A23403G C26447T T27851C GGG28881AAC C29077T C29541T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551332
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951C6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6027T T6345C G11071C C11074T G11083T C14805T T18771C C18946T C23248T G26144T C27532T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551335
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951B24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G A23403G G28378T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551339
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951DC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T C14616T G17401A C22680Y A23403G C25844T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551340
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951DF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T C18681T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551342
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951F91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20931A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551345
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951E1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T G20679T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551346
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951C30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A C14408T A19650G T20556C G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553367
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-959FB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553440
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A02C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C534T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G C27945T T28136Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553475
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A00E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553507
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-959FE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T C19007T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553529
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A01D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553534
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-959FA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553546
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-959FF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T T20349C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553619
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-959FD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553896
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9578FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4396G C6633T C14408T A16140G G17443T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553929
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9575D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9438T C14408T G17808K A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553954
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-957405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083K C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553983
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9573F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554009
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-957696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4547G C9665T C12473T C13665T C14408T C18167T C21952T A23403G A26402G C27046T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554118
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-956CE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4054C C4320T -11075TTT G11083T C14408T A16615G G16861T C20844T A23403G G25563T C25688T C26882T T27539C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554123
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9572CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554133
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9579BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7429G C14120T C14408T G20041A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_554138
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-957BC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3177T C3622T G4510T C14408T G19481T A23403G G25654T C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554148
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-95702F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554154
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-957B88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1181T G1914A C3037T G4399T C8247T C8917T C11074T C14408T T16456C C18687T T18753C A23403G G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554159
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-95706B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1473T T2377C C3037T C12885T C14408T A23403G G28346A GGG28881AAC G29751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554166
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-956C59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T G3239T C12924T C14408T C15738T C20115T A23403G C28732T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554178
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9572FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T C25916T GGG28881AAC T29410C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554184
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-956D38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7258C T8941C G12911A C14408T G15438T A20268G A23403G T27977C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554205
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-956D83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1782T C3037T T5908Y C6861T C10747T C14408T C19170T G19509A A23403G G23663T C25572T A25718T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554208
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9572DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC C29002T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554217
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-95720B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554224
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9579AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7429G C14120T C14408T G20041A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554240
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-95713B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554243
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9570E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1647C C3037T C14408T A20712G A23403G G25429T C25611T T26418C C29585T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554244
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-957168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C8152T T9519C C14408T A23403G G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554258
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9570D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C C4927Y C5183Y C7768T C14408T A23403G G26660K G27376K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554269
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9579F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4741C C5310Y C6896T C14408T A23403G C25831T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554276
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9570F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12249Y C14408T G15380T C17321T G17516T T20664C A23403G G24821T G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554289
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-956C3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G C20693A A23403G TTA26159- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554297
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-95705C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC T29410C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554306
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-95704D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554312
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9572B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3961T C14183T C14408T G15894T T19893C A23403G G25523T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554315
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-957010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554317
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-956DCF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1473T T2377C C3037T C12885T C14408T A23403G G27621T G28346A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554437
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95324B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18511T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554449
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95166F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14408T G15438T A20268G A23403G C24026T C25904T G28690T C28866T C29679Y G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554461
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C11750T C14408T G15438T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554481
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95169C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11572T C14408T A23403G G25244T G28857T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554490
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554502
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9533A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554556
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11747A C14408T C16616T G17259T C21575T C22498T A23403G GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554786
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-958A99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554788
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-957D73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554819
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-958079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3199C A12949G C14408T C18143T A23403G G26724T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554839
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-958677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18169A A23403G C26606T C28290T G29717A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554901
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A0B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T C3045T C3373A A4571C C12528T C14408T C14688T C18657Y A23403G C26270T G27706T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554918
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A61B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19402T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554939
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A0A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G922T C3037T G5704T C6541T C13431T C14408T G17338T A23403G G25690T GGG28881AAC CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_555028
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A62A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T C19402T A20268G A23403G G28378T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555072
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T5644C T7357C C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555313
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9519C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2756G C3037T C6568T T10513C C14408T A23403G T27851C GGG28881AAC C29541T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555319
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9518C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C10189T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555327
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951C12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A21080C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555328
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9518E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1335C G2945A C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29567G A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555333
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951C03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C6927T C14408T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555341
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C9430T C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555343
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95182D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C8782T C14408T G17058T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555358
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951B06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T G5629T C14408T C20405T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555367
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95185A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T26418C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555376
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9518A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555386
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95191B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555394
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951ADC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3338T C3511T C14408T A22301G A23403G G28939T G29508A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555444
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951A45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555452
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951CF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C3768T C4158T C8318A G11083T C13554Y C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555454
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9518D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T G18186T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555456
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555468
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951AFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555469
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C10854T C13335T C14408T A20268G A23403G C28854T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555470
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95181E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3228G T4033Y C6633T C14408T G17014T C18491Y A23403G C23481T C25777T C26947T G27746T C28725T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555471
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95183C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C14408T G20352K A23403G GAACTGTAACTT25424- T27244C G28048K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555477
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951C21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555481
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555485
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95184B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T A9997C G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555488
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9517B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555490
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95192A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2156T C3037T A9433T G10265A C14408T A19650G A20067T A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555495
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9517F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C8782T C14408T G17058T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555496
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6582T A10479G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555504
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951A90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555526
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95B137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A453R C3037T T5653C C14408T A22970G A23403G C26955Y G27798T C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555580
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95B0FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5653C C14408T A22970G A23403G G27798T C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555582
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AEC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2675T C3037T C6681T C7162T C14408T G15438T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555593
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95B119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5653C C14408T A22970G A23403G G27798T C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555677
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-95ADF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556314
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A7DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7164T C7528Y C14408T T19590C G23282T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556419
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A7EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7164T C14408T T19590C G23282T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556461
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-949D38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T G13617T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558239
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-5642D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1834C C3037T C10851Y C11783A C14408T C18877T C21614T A23403G G24197T C25413T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558243
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-559ABA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T C14408T C16173T C19140T C19374T A23403G G26620C A28211G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558245
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-559DA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T C14408T C16173T C19140T C19374T A23403G G26620C A28211G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558252
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-563A62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5489A A6308C C14408T T19839C C21549T G21593C A23403G G25793T C26681T GGG28881AAC C29642T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558253
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-559EFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T C14408T C16173T C19140T C19374T A23403G G26620C A28211G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558257
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-55A3DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4300T C4780T C6638T T7792C C14408T C20759T G21724T A23403G C23758T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558258
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-5605FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6825G C10474T C14408T C17118T T20526C A23403G GGG28881AAC C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558273
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-56B217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2044A C3037T C14408T A23403G GGG28881AAC G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558279
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-569677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4547G C9665T C12473T C13665T C14408T C18167T C21952T A23403G A26402G C27046T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558284
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-569D72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558285
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-55F10A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2003Y C3037T C3593Y C8597T C14408T G19846A A23403G G24399K G28086T C28253Y G28487C GGG28881AAC T28894C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558286
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-55C52F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C1915T C3037T G6476T C8140T G10097A G11083T T13216G C14408T C18606T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558290
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-5630D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC C28171T GGG28881AAC A28995R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558294
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-562EC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21306T C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558295
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-56514D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635Y C3037T G9479T C14408T G22205T A23403G C25517A G27281T C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558297
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-5757FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C3042T C7764T C14408T A19810G G22112A A23403G G24236T C27092T C27679T GGG28881AAC C29466T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558298
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-559E27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T C14408T C16173T C19140T C19374T A23403G G26620C A28211G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558300
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-56133C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558301
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-559C3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T G2833K C3037T C3294Y C14408T C16173T C19140T C19374T A23403G G23568C G26620C A28211G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558303
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-576F7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G GGG28881AAC C29445T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558304
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-56381D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3403T A6308C C14408T T19839C TGG21294AAA A23403G G25793T G26383K C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558309
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-5637C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558314
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-565AE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T C4668T A6211G A8659G C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558315
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-562CA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6825G C10474T C14408T C17118T G18040T T20526C A23403G GGG28881AAC C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558323
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-59625F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7712T G10097A T13216G C14408T G15957A A23403G C23731T G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558334
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-55E165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6825G C14408T C17118T T20526C A23403G GGG28881AAC C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558336
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-55C079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G A27831G C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558337
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-565D2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558340
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-55C1FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26606T C28290T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558341
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-563929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C4002T G10097A C12213T C13536T C14408T A23403G C23731T G25456T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558342
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-568D37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T A23403G G23868T C25782Y GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558347
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-567A31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26606T C28290T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558358
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-559CF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T C14408T C16173T C19140T C19374T A23403G G26620C A28211G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558360
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-56710F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558372
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-562D6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C7772T G10097A C13536T C14408T A23403G C23731T C27513T C28697T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558381
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-568CD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2044A C3037T C14408T A23403G GGG28881AAC G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558385
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-568D0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1862T A2064G C3037T C4002T G10097A G11083T C13536T C14408T C18312T G18880T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558388
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-57314C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C64T C241T C3037T C5183T C9050Y C13730T C14408T A23403G G25429T C26895T C28253Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558391
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-559F15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T C14408T C16173T C19140T C19374T A23403G G26620C A28211G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558393
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-559DB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G12223K C14408T C16173T C19140T C19374T A23403G G26620C A28211G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558397
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-562E76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635Y C3037T A6825G C14408T C17118T T20526C A23403G C23422Y C28253Y GGG28881AAC C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558399
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-562ABE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2650T C3037T C14408T C16289T G16573T A22095G A23403G G25429T T29479C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558638
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-5715F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G T25245C G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558731
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-5747C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2583T C3037T C9430T G10097A C14408T T14451Y C16101Y C17012T A23403G C23731T G28580T GGG28881AAC G29703T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558923
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-51856B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7712T G10097A T13216G C14408T G15957A A23403G C23731T G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558928
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-50ED60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15540Y C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558980
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-50EF97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T C3037T C14408T C21637T A23403G T25202K A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559005
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-50D314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3551T G5425T T5573C C6380T C7420T G8179T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559009
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-511B15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3551T G5425T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559043
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-512376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C19554Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559047
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-50DD70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3569G C3695T A6211G A8659G C14408T C19488T A23403G C25160T C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559080
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-510B52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C1915T C3037T G6476T C8140T G10097A G11083T T13216G C14408T G17122K C18606T A23403G C23731T T26813A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559306
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AF3D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25217T C25350T C25731T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559333
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AF166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4396G C6633T C14408T C15546T G17443T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559485
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A63C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6324G A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559495
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A9E74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C18807T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559525
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AA16B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C18807T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559528
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A9885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T G20679T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559548
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AA5E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A18366R A23403G CAA25572YMW GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559553
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A975B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T C14408T G19894A G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559567
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A9DC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C18807T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559584
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A6721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C486T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559607
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A667F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6324G A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559612
 2020-06-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A9B7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_463987
 2020-06-11 2020-06-11
 Canada hCoV-19/Canada/ON_MU-S49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A687G TCATTT689- C1059T CGCACTCAAAGGGATT2397- C2574- CTGTTGAAGCTCCATTGGTTGGTACACCAGTTTGTATTAACGGGCTTATGTTGCTCGAAATCAAAGACACAGAAAA2583- C2667G CTTGCACCTAATATGATGGTAACAAACAATACCTTCACACTCAAAGGCGGTGCACCAACAAAGGTTACTTTTGGTGATGACACTGTGATAGAAGTGCA2669- T2781K C3037T AT3744MW C8092T TAAACATACTGACTTTTCAAGTGAAATCATAGGATACAAGGCTATTGATG8656- TCACTCGTGACATAGCAT8712- A8732C T8737C TT8740AG TTTGCTAACAAACATGCTGATTTTGACACATGGTTTAGCCAGCGTGGTGGTA8744- C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_469254
 2020-06-11 2020-06-17
 China hCoV-19/Beijing/IVDC-01-06/2020
 C241T C3037T C6026T C12085T C14408T A23403G GGG28881AAC A29694C

EPI_ISL_469255
 2020-06-11 2020-06-17
 China hCoV-19/Beijing/IVDC-02-06/2020
 C241T C3037T C6026T C14408T A23403G GGG28881AAC

EPI_ISL_469256
 2020-06-11 2020-06-17
 China hCoV-19/env/Beijing/IVDC-03-06/2020
 C241T C3037T C6026T A11910G C14408T A23403G GGG28881AAC A29694C G29868A

EPI_ISL_471150
 2020-06-11 2020-06-19
 United States hCoV-19/USA/WI-GMF-05945/2020
 C241T C715T C1059T G2036T C3037T C11916Y C14408T G23311T A23403G A23586G G25563T GC27882SY

EPI_ISL_471529 MT834849
 2020-06-11 2020-06-22
 Georgia SARS-CoV-2/human/GEO/Tb-27822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATC1- C241T C541T C1059T C3037T T11418C C14408T C15026T A23403G G25563T GTTA26158- G27430A AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_472416
 2020-06-11 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111E7A/2020
 C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789-

EPI_ISL_473503
 2020-06-11 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B4C15/2020
 C241T C1059T C1218T C3037T C9286T T14313C C14408T A23403G G25563T G28378T G28899C

EPI_ISL_473504
 2020-06-11 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B4C42/2020
 C241T C3037T A9548G C10252T C11379T C14408T CTTTACTTG22281- A23403G GGG28881AAC

EPI_ISL_475030 MT664143
 2020-06-11 2020-06-23
 India SARS-CoV-2/human/IND/GBRC205a/2020
 C241T A2292C C2836T C3037T G4300T C14408T A16512G C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_475031 MT664161
 2020-06-11 2020-06-23
 India SARS-CoV-2/human/IND/GBRC205b/2020
 C241T A2292C C2836T C3037T G4300T A16512G C18568T C18877T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_475032 MT664169
 2020-06-11 2020-06-23
 India SARS-CoV-2/human/IND/GBRC206/2020
 C241T C3037T T11118C C14408T A23403G A25590T

EPI_ISL_475033 MT664170
 2020-06-11 2020-06-23
 India SARS-CoV-2/human/IND/GBRC207a/2020
 C241T A2292C C2836T C3037T G4300T C14408T A16512G C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_475034 MT664172
 2020-06-11 2020-06-23
 India SARS-CoV-2/human/IND/GBRC207b/2020
 C241T A2292C C2836T C3037T G4300T C18568T C18877T G21724T C22444T A23403G G25563T C26735T C29750T

EPI_ISL_475035 MT664197
 2020-06-11 2020-06-23
 India SARS-CoV-2/human/IND/GBRC208a/2020
 C123T A2292C C2836T C3037T C7321T C8782T C18568T C20030T G22468T A23403G C25844T T28144C G28878A C29750T

EPI_ISL_475036 MT664201
 2020-06-11 2020-06-23
 India SARS-CoV-2/human/IND/GBRC208b/2020
 C123T C900T G4300T C8782T C14408T A16512G C18877T C19154T C22444T G25563T C26735T C28854T G28878A G29742A

EPI_ISL_475037 MT664202
 2020-06-11 2020-06-23
 India SARS-CoV-2/human/IND/GBRC209a/2020
 C241T A2292C C2836T C3037T G4300T C14408T C18568T C18877T G21724T A23403G G25563T C29750T

EPI_ISL_475038 MT664203
 2020-06-11 2020-06-23
 India SARS-CoV-2/human/IND/GBRC209b/2020
 C241T C3037T C14408T T14832C A16512G C19154T C22444T A23403G C26735T G28337A C28854T

EPI_ISL_475039 MT664205
 2020-06-11 2020-06-23
 India SARS-CoV-2/human/IND/GBRC210a/2020
 C241T A2292C C2836T C3037T G4300T C14408T A16512G C18568T C18877T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_475040 MT664209
 2020-06-11 2020-06-23
 India SARS-CoV-2/human/IND/GBRC210b/2020
 C241T C2836T C3037T C14408T C19154T A23403G A26148T C29750T

EPI_ISL_475041 MT676013
 2020-06-11 2020-06-23
 India SARS-CoV-2/human/IND/GBRC211/2020
 C241T C2836T C3037T T6745C G7798T C14408T G14829T A23403G GTTA26158- G26951T C29750T

EPI_ISL_475042 MT676014
 2020-06-11 2020-06-23
 India SARS-CoV-2/human/IND/GBRC212/2020
 C241T C3037T T6745C G7798T C14408T G14829T A18802C A23403G GTTA26158- G26951T

EPI_ISL_475045 MT664727
 2020-06-11 2020-06-23
 India SARS-CoV-2/human/IND/GBRC214a/2020
 C140T C241T C2836T C3037T C14408T C18568T G22346T A23403G G25563T C29750T

EPI_ISL_475046 MT664729
 2020-06-11 2020-06-23
 India SARS-CoV-2/human/IND/GBRC214b/2020
 C241T A2292C C3037T G4300T C8722T C14408T A16512G C18877T C19154T G21724T C22444T A23403G C26735T C28854T

EPI_ISL_475569
 2020-06-11 2020-06-23
 Sweden hCoV-19/Sweden/20-51988/2020
 C241T GGTCTT1598- C3037T C14408T C16887T A23403G GGG28881AAC

EPI_ISL_475571
 2020-06-11 2020-06-23
 Bangladesh hCoV-19/Bangladesh/JUST-GC40.38/2020
 A1163T C3037T C3961T C4897T G12170A C14408T G14973A G20274T G23108C A23403G AAAAAAAAAA29894-

EPI_ISL_475573
 2020-06-11 2020-06-23
 Bangladesh hCoV-19/Bangladesh/JUST-GC40.86/2020
 A1163T C1191T C3037T C14408T C15222T C18555T A23403G G25617T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_476863
 2020-06-11 2020-06-26
 India hCoV-19/India/GBRC226/2020
 C241T C920T C2836T C3037T G6352T C14408T G15444T C18877T G20433T C22444T A23403G G25563T C26735T G27842A G28077T C28854T

EPI_ISL_476864
 2020-06-11 2020-06-26
 India hCoV-19/India/GBRC227/2020
 C241T C2836T C3037T C13115T C14408T C18877T C22444T A23403G G23587T G25563T C26735T G27762T C28854T

EPI_ISL_476865 MT675944
 2020-06-11 2020-06-26
 India SARS-CoV-2/human/IND/GBRC228a/2020
 C241T C2836T C3037T C3429T T13006G C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29236A

EPI_ISL_476866 MT675945
 2020-06-11 2020-06-26
 India SARS-CoV-2/human/IND/GBRC228b/2020
 C241T C2836T C3037T C3429T C14408T C18877T C22444T A23403G G25563T C28854T C29236A

EPI_ISL_476869 MT675951
 2020-06-11 2020-06-26
 India SARS-CoV-2/human/IND/GBRC230/2020
 C241T C3037T C14408T A23403G

EPI_ISL_476870 MT675954
 2020-06-11 2020-06-26
 India SARS-CoV-2/human/IND/GBRC231a/2020
 C241T A2292C C2836T C3037T G4300T C14408T A16512G C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_476871 MT675955
 2020-06-11 2020-06-26
 India SARS-CoV-2/human/IND/GBRC231b/2020
 C241T A2292C C2836T C3037T G4300T A16512G C18568T C18877T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_476872 MT675957
 2020-06-11 2020-06-26
 India SARS-CoV-2/human/IND/GBRC232a/2020
 C241T A2292C C2836T C3037T G4300T C14408T A16512G C18568T C18877T G21724T C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_476873 MT675959
 2020-06-11 2020-06-26
 India SARS-CoV-2/human/IND/GBRC232b/2020
 C241T A2292C C2836T C3037T G4300T A16512G C18568T C18877T C19154T G21724T C22444T A23403G G25563T C28854T C29750T

EPI_ISL_477139
 2020-06-11 2020-06-28
 Bangladesh hCoV-19/Bangladesh/CHRF_0030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G3152K C14408T C18877T C22444T A23403G G25494T G25563T C26735T C28706A C28854T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_478160
 2020-06-11 2020-06-30
 United Kingdom hCoV-19/Scotland/CVR3866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A16882G G19542T G20679A A23403G T27576G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478343
 2020-06-11 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6E87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478370
 2020-06-11 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D718D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479365
 2020-06-11 2020-06-30
 United Kingdom hCoV-19/Wales/PHWC-164C7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G219T C241T T886W C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_480679 MT745659
 2020-06-11 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC1955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T C4206T G10097A C13536T C14408T C15720T C21952T C22523V A23403G C23731T G27798A GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_480682 MT745662
 2020-06-11 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC1958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C8917T G9389A C13072T C14408T A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_480686 MT745665
 2020-06-11 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C7728T T9937Y G13514S C14408T G16075S G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_481201
 2020-06-11 2020-07-02
 India hCoV-19/India/ILSCV35482/2020
 C241T C3037T C14408T A23403G TTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29726-

EPI_ISL_481202
 2020-06-11 2020-07-02
 India hCoV-19/India/ILSCV35574/2020
 C241T C313T C3037T C5700A C14408T A23403G A25442T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_482716
 2020-06-11 2020-07-05
 South Africa hCoV-19/SouthAfrica/KRISP-0201/2020
 C241T C3037T C14408T A23403G C23625T GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_482717
 2020-06-11 2020-07-05
 South Africa hCoV-19/SouthAfrica/KRISP-0202/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T A23403G C23625T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_482718
 2020-06-11 2020-07-05
 South Africa hCoV-19/SouthAfrica/KRISP-0205/2020
 C241T C3037T C14408T A23403G C23625T GGG28881AAC AAAAAAAAAAAAAAAA29888-

EPI_ISL_482720
 2020-06-11 2020-07-05
 South Africa hCoV-19/SouthAfrica/KRISP-0211/2020
 G174T C241T C3037T C14408T A23403G C23625T

EPI_ISL_483651
 2020-06-11 2020-07-08
 Switzerland hCoV-19/Switzerland/150006_408_G02_plus/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3725Y G5138C G6899S G7065K G11083T C14408T A20742C A23403G GGG28881AAC A29819W TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483820 MT740436
 2020-06-11 2020-07-08
 India SARS-CoV-2/human/IND/GBRC239/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C14571T A18046C C18877T A23403G G24197T G25563T C26735T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_483850 MT740923
 2020-06-11 2020-07-08
 India SARS-CoV-2/human/IND/GBRC259/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C123T C7321T C8782T G22468T C25844T T28144C G28878A G29742A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483851
 2020-06-11 2020-07-08
 India hCoV-19/India/GBRC260a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2292C C2836T C3037T G4300T C14408T C18568T C18877T G21724T C22444T A23403G G25563T C26735T G27852T C29750T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_483852 MT758402
 2020-06-11 2020-07-08
 India SARS-CoV-2/human/IND/GBRC260b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A16512G C18877T C19154T A23403G G25563T T25959C C26735T C28854T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_483853 MT758421
 2020-06-11 2020-07-08
 India SARS-CoV-2/human/IND/GBRC261a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T C14408T C19763T A23403G G28975T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483854 MT758436
 2020-06-11 2020-07-08
 India SARS-CoV-2/human/IND/GBRC261b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G2164T A2292C C3037T G4300T A4982G C14408T C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T G28975T C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483855 MT758439
 2020-06-11 2020-07-08
 India SARS-CoV-2/human/IND/GBRC262/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G599T G2237A C3037T G3085T C3634T G8179T C14408T C15324T G16738C C21646T C21789T A23403G G28001T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483897
 2020-06-11 2020-07-08
 United Kingdom hCoV-19/England/BIRM-6089D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2299T C3037T G3955T TCAAATTCG6329- C14408T A23403G C23655T T25663C C26936T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484234
 2020-06-11 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6D99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC AACAATGCTA29767- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484235
 2020-06-11 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6DB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T A8450G G9473A G10097A C14408T C14605T G17721T C18032T C21614T TTA21991- A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484238
 2020-06-11 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6DE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T C22858T A23403G C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484242
 2020-06-11 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6E3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T G13749T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484244
 2020-06-11 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6E69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15544T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484482
 2020-06-11 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C9847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2910T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484841 MT750051
 2020-06-11 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484861 MT750070
 2020-06-11 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9520T C12525T C14408T C16260T G21604T A23403G G25563T C25728T G28378T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484866 MT750074
 2020-06-11 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2003T C3037T C5310T C12294T C14408T T22825C A23403G C25511T G25563T CGGAGT29743- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484871 MT750079
 2020-06-11 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T T19839C A23403G C23707T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489957
 2020-06-11 2020-07-14
 United States hCoV-19/USA/WI-GMF-M00011/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C715T C1059T G2036T C3037T C11916T C14408T C20313T G23311T A23403G A23586G C25000T G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491049
 2020-06-11 2020-07-16
 Romania hCoV-19/Romania/ROSV_12812/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T G18867T A20268G C22550T A23403G A25385G C29025T GT29841TC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_492026
 2020-06-11 2020-07-18
 Oman hCoV-19/Oman/205043490/2020
 ATTAAAGGTTTATAC1- TCCCAG18- C241T C3037T G10265A C14408T C16293T G18780T T18792C A23403G A25747G C28854T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860GAT

EPI_ISL_494051
 2020-06-11 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T A1547D C3037T T3115C G8102T C9438T C14408T A23403G G28851T GGG28881AAC G29777T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494134
 2020-06-11 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166F82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G C26955T G27877T GGG28881AAC G29736T AAAAAAAAAAAAAA29890-

EPI_ISL_495222
 2020-06-11 2020-07-22
 India hCoV-19/India/CCMB_M664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C832T C6312A G11083T C13730T C14790T G17988T C19152T G23006A C23929T C28311T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495223
 2020-06-11 2020-07-22
 India hCoV-19/India/CCMB_M686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A G5345T C6026T C6573T C14408T A23403G C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495224
 2020-06-11 2020-07-22
 India hCoV-19/India/CCMB_M696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C8247T C9693T C10815T C14408T C16626T C19170T A23403G GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495229
 2020-06-11 2020-07-22
 India hCoV-19/India/CCMB_M711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C9693T C10815T C14408T C16626T A23403G T25640C GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495230
 2020-06-11 2020-07-22
 India hCoV-19/India/CCMB_M712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C7594T C9693T C14408T C16626T T17454C A23403G C27331T C27697T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495231
 2020-06-11 2020-07-22
 India hCoV-19/India/CCMB_M717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C9693T C10815T C14408T C16626T C19170T A23403G GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495232
 2020-06-11 2020-07-22
 India hCoV-19/India/CCMB_M722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6573T C9073T C14408T A23403G C25528T G25742A GGG28881AAC G29620C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495233
 2020-06-11 2020-07-22
 India hCoV-19/India/CCMB_M733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6573T C14408T A23403G G23405C C25528T G25742A A27756C GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495234
 2020-06-11 2020-07-22
 India hCoV-19/India/CCMB_M739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4331T G4354A C6573T C12525T C14408T T18834C C19145T A23403G C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495235
 2020-06-11 2020-07-22
 India hCoV-19/India/CCMB_M740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A4372G C5700A G8653C T8906C C9693T C14408T C16626T G21518T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_496933 MT831660
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2301/2020
 ATT1- C241T C3037T G8075A C11020T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496937 MT831578
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2305/2020
 ATT1- C241T C3037T T8559A G8561A T10190C C10507T C14408T C19145T T19839C A23403G C25688T C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496938 MT831741
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2306/2020
 ATTAAA1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496939 MT831627
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2307/2020
 ATTAA1- C241T C3037T C14408T C14768T C15933T G16206T G16968T T19809A T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496940
 2020-06-11 2020-07-24
 United States hCoV-19/USA/WA-S2308/2020
 ATT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496942 MT831874
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2310/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T G17334A A20268G A23403G T24076C C28854T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_496943 MT831838
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2311/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496947 MT831722
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2315/2020
 ATTAAAGGTTT1- C241T C1449T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G C28708T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496948 MT831685
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2316/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T G7798T T8473C C9286T G10642T G11083T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496949 MT831828
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2317/2020
 AT1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496951 MT831618
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2319/2020
 AT1- C241T C3037T C14408T C15237T G15260T C15933T G16968T T19839C A23403G G26428T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496952 MT831823
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2320/2020
 ATTAAAG1- C241T C3037T G7393T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496953 MT831654
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2321/2020
 AT1- C241T A2923G C3037T C7834T A12199G C14408T C15714T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496954 MT831642
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2322/2020
 AT1- C241T A2923G C3037T C7834T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_496955 MT831672
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2323/2020
 ATTAAAGG1- C241T C3037T C3619T C14408T C15352T C15933T G16968T C18747T T19839C A23403G G28086T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496956
 2020-06-11 2020-07-24
 United States hCoV-19/USA/WA-S2324/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496957 MT831683
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2325/2020
 AT1- C241T A2127G C3037T C3397T C14408T T15069C C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496958
 2020-06-11 2020-07-24
 United States hCoV-19/USA/WA-S2326/2020
 ATTAAA1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496964 MT831832
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2332/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T G16968T C17304T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496965
 2020-06-11 2020-07-24
 United States hCoV-19/USA/WA-S2333/2020
 AT1- C241T A2127G C3037T C14408T C15933T G16968T T19839C A23403G G26746T C27945T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496966 MT831751
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2334/2020
 AT1- C241T C1060T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496967 MT831815
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2335/2020
 ATTAAAGGTTTATAC1- C241T C1060T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496968 MT831581
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2336/2020
 A1- C241T C3037T C14408T G15260T C15933T G16968T T19839C A23403G G26428T C27213T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_496969 MT831621
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2337/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_496970 MT831667
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2338/2020
 ATTAAAG1- C241T C3037T G8075A A12199G C14408T G15243T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496988 MT831708
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2356/2020
 ATTAAAGGTTT1- C241T C3037T C3619T C14408T C15352T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496989 MT831690
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2357/2020
 ATTAAAGGTT1- C241T A2127G C3037T C3397T C14408T G15543T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496990 MT831585
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2358/2020
 AT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496991 MT831756
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2359/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T G7393T G8137T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_496992 MT831819
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2360/2020
 ATTAAAGGTTTAT1- C241T C3037T C6445T C14216T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496996 MT831793
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2364/2020
 ATTAAAGGTTTAT1- C241T G2144T C3037T C3768T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496998 MT831844
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2366/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1489A T2114C C3037T C6445T C14408T G16813A A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_496999 MT831837
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2367/2020
 ATTAAAGGTTT1- C241T A2161G C3037T C5758T C14408T C16376T T18453C C18877T A23403G G25563T A28901G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497000 MT831743
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2368/2020
 AT1- C241T C1060T C3037T C14408T T19839C A23403G G25445A C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497001 MT831717
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2369/2020
 ATTAAAGGTTTAT1- C241T A1176T T1847C T3011C C3037T C13059T C14408T G22205T A23403G T27869C G28079T T28853G G29755T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497006
 2020-06-11 2020-07-24
 United States hCoV-19/USA/WA-S2374/2020
 ATTAAAGGTT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497007 MT831634
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2375/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_497008 MT831589
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2376/2020
 AT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C C21575T A23403G C28674T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_497009 MT831746
 2020-06-11 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2377/2020
 AT1- C241T C3037T C12513T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_498603
 2020-06-11 2020-07-27
 Singapore hCoV-19/Singapore/705/2020
 ATTAAAGGTT1- A107R G1397A C6312A C8139T G11083T C13730T C23929T G25769A C26642T T28160C C28311T AAAAAAAAAAAA29892-

EPI_ISL_498605
 2020-06-11 2020-07-27
 Singapore hCoV-19/Singapore/707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGA1- C307T A1935G C3738T C3743T C14877T C16948T C23940T C27769Y A28792G G28985T AAAAAAAAAAAA29892-

EPI_ISL_501090
 2020-06-11 2020-07-30
 United States hCoV-19/USA/WA-UW-10582/2020
 ATTAAAGGTTTATACCTT1- C21T C36Y C241T C1059T C3037T T3733A C5822T T8883C TT8885AA T12181C AGG13512TTA TA14222GC C14408T T21146D A23403G G25563T G29543T -29904AAAAAAAAAAAAAAAAA

EPI_ISL_507107
 2020-06-11 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D54F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- ATG518- A1007C A2480G C2558T G11083T C13536T G13713T C14805T A16821G G18255T C22088T G26144T C26895T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_507787
 2020-06-11 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C1059T C3037T C14408T C21575T C22006T A23403G C25916Y C28603T C29724T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509375
 2020-06-11 2020-08-05
 Singapore hCoV-19/Singapore/765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G9500A G11083T C13730T G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_511806
 2020-06-11 2020-08-08
 United States hCoV-19/USA/CA-IGI-0051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2668T C3037T G3871T C6268T A10588C C14408T A23403G C23982T GGAACTGTA25423- G25563T

EPI_ISL_511809
 2020-06-11 2020-08-08
 United States hCoV-19/USA/CA-IGI-0054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C2668T C3037T G3871T C6268T A10588C C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_511830
 2020-06-11 2020-08-08
 United States hCoV-19/USA/CA-IGI-0076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C2668T C3037T G3871T C6268T A10588C C14408T A23403G G25563T

EPI_ISL_511831
 2020-06-11 2020-08-08
 United States hCoV-19/USA/CA-IGI-0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2668T C3037T G3871T C6268T A10588C C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_511839
 2020-06-11 2020-08-08
 United States hCoV-19/USA/CA-IGI-0085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2668T C3037T G3871T C6268T A10588C C14408T A23403G G25563T

EPI_ISL_511845
 2020-06-11 2020-08-08
 United States hCoV-19/USA/CA-IGI-0091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2668T C3037T G3871T C6268T A10588C C14408T A23403G G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_511849
 2020-06-11 2020-08-08
 United States hCoV-19/USA/CA-IGI-0095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2668T C3037T G3871T C6268T A10588C C14408T A23403G C23982T GGAACTGTA25423- G25563T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_511961
 2020-06-11 2020-08-10
 United Kingdom hCoV-19/England/BRIS-1325C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2488T C3037T C3551T T5573C C6380T G6662A C7420T G11801A C14408T T19839C A23403G G24586T G25552T GGG28881AAC T29607C CCACGCGGAGTACGATCGAGTGT29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512660
 2020-06-11 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T T15117C C15141T C15579T G19816T A23403G C25904T GGG28881AAC G28903T CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_512661
 2020-06-11 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C14408T T15117C C15141T C15579T G19816T A23403G C25904T GGG28881AAC G28903T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_513073
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1036/2020
 C241T C3037T C10808T C14408T C18877T G22604A A23403G G25563T C26735T

EPI_ISL_513089
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1072/2020
 C241T C3037T C14408T A20047G G25543T G25563T C26735T C28887T

EPI_ISL_513090
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1073/2020
 C241T C3037T C3045T C9979T C14408T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513091
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1074/2020
 C241T G1210T C9979T C14408T C22444T G25563T C26735T C28854T

EPI_ISL_513092
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1075/2020
 C241T G1210T C3037T C3045T C9979T C14408T C22444T G25563T C26735T C28854T

EPI_ISL_513093
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1076/2020
 C241T G1210T C3037T C3045T C9979T C14408T C18877T C22444T G25563T C26735T C28854T

EPI_ISL_513094
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1077/2020
 C241T C4206T C10789T C14408T A17236G C18877T C22444T G25563T C26735T C28854T

EPI_ISL_513096
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1079/2020
 C241T C3037T C6449T C9165T G11083T C14408T C17738T C18877T A23403G G25563T C26735T

EPI_ISL_513097
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1081/2020
 C241T C3037T C4890T C14408T A23403G G25563T C26735T G29747T

EPI_ISL_513098
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1085/2020
 C241T C3037T C14408T C18877T C22444T G25563T C26735T C27389T C28854T

EPI_ISL_513100
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1087/2020
 C241T G2720T C3037T C5184T C14408T G25563T C26735T

EPI_ISL_513101
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1090/2020
 C241T C3037T C14408T A17236G C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513102
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1093/2020
 C241T G2381T C3037T A5742C C14408T C18647T C22444T C25515T G25563T C26735T C28854T C29530T

EPI_ISL_513111
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1107/2020
 C241T C3037T C4890T C14408T A23403G G25563T C26735T

EPI_ISL_513112
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1108/2020
 C241T C3037T A5533G C6310T C11095T C14408T TTA21991- G25563T C26735T C28253T

EPI_ISL_513113
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1109/2020
 C241T G2921A C3037T C14408T C19972T G25563T C26735T

EPI_ISL_513116
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1112/2020
 C241T C10789T C14408T C22444T G25563T C26735T C28854T

EPI_ISL_513117
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1113/2020
 C241T C3037T G8867A C10789T C14408T A17236G C18877T C22444T A23403G G25563T C26735T C28854T C29218T G29742A

EPI_ISL_513118
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1114/2020
 C241T C3037T G8867A C10789T C14408T A17236G C18877T C22444T A23403G G25563T C26735T C28854T C29218T G29742A

EPI_ISL_513119
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1115/2020
 C241T C3037T G8867A C10789T C14408T A17236G C18877T C22444T A23403G G25563T C26735T C28854T C29218T G29742A

EPI_ISL_513120
 2020-06-11 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1116/2020
 C241T C3037T A10258G G14131A C14408T C16457T C22444T G23666C G24757T G25563T C26735T C28854T

EPI_ISL_514881
 2020-06-11 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2478/2020
 ATTAAAGGTTTAT1- C241T C829T C1059T C3037T C6354T G11521T C11916T C14408T C16650T A20675T C22450T A23403G G25563T G29179T C29358T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_514882
 2020-06-11 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2479/2020
 ATT1- A4G C241T C829T C1059T C3037T C6354T G11521T C11916T C14408T C16650T A20675T C22450T A23403G G25563T G29179T C29358T G29779T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_514883
 2020-06-11 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2480/2020
 ATTAAA1- C241T C829T C1059T C3037T C6354T G11521T C11916T C14408T C16650T A20675T C22450T A23403G G25563T G29179T C29358T G29779T AAAAAAAAAAAAAAA29889-

EPI_ISL_514884
 2020-06-11 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2481/2020
 ATTAAAGGTTTATA1- C241T C829T C1059T C3037T C6354T G11521T C11916T C14408T C16650T A20675T G20691T C22450T A23403G G25563T G29179T C29358T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_514885
 2020-06-11 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2482/2020
 ATTAAA1- C241T C829T C1059T C3037T C11916T C14408T C16650T A20675T C22450T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514886
 2020-06-11 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2483/2020
 ATTAAAG1- C241T C829T C1059T C3037T A9259G C11916T C14408T C16650T A20675T C22450T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_514887
 2020-06-11 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2484/2020
 ATTAAAGG1- C241T C829T C1059T C3037T C6354T G11521T C11916T C14408T C16650T A20675T C22450T A23403G G25563T G29179T C29358T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_514888
 2020-06-11 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2485/2020
 ATTAAAGGTTTAT1- C241T C829T C1059T C3037T C11916T C14408T C16650T A20675T C22450T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514889
 2020-06-11 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2486/2020
 ATTAAAG1- C241T C829T C1059T C3037T C11916T C14408T C16650T A20675T C22450T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_514890
 2020-06-11 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2487/2020
 ATTAAA1- C241T C829T C1059T C3037T C11916T C14408T C16650T A20675T C22450T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_514891
 2020-06-11 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2488/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G27047T G29179T G29779T A29871C AAAAAAAAAAAAAAAA29888-

EPI_ISL_514894
 2020-06-11 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2491/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C12459T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_516421
 2020-06-11 2020-08-20
 North Macedonia hCoV-19/North Macedonia/3122/2020
 ATTAAA1- C241T C313T C3037T G4148T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_521892 MT972135
 2020-06-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C7728T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521895 MT972136
 2020-06-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC1984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522402 MT946891
 2020-06-11 2020-08-25
 United States SARS-CoV-2/human/USA/AK-PHL471/2020
 ATTAAAGGTTTAT1- C241T C2143T C3037T C14408T A20268G A23403G C29077T C29370G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_523268
 2020-06-11 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T6082C T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523269
 2020-06-11 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T6082C T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523415
 2020-06-11 2020-08-26
 Netherlands hCoV-19/Netherlands/NH-EMC-46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A T23084C A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523502
 2020-06-11 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A C21707T G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523616
 2020-06-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524046
 2020-06-11 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-23386V/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A30G C241T C313T C3037T C3602T A6551C G11521A C14408T C21034T C21855T A23403G C26801T GGG28881AAC C29459T G29734A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_525495
 2020-06-11 2020-08-31
 Italy hCoV-19/Italy/FVG-ICGEB-S204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCT1- C241T C3037T C4321T G14055C C14408T G17632T G20398A A23403G A26530G C27945T G28079T C29870M A29903CGT

EPI_ISL_525496
 2020-06-11 2020-08-31
 Italy hCoV-19/Italy/FVG-ICGEB-S205/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C4321T C5974T G14055C C14408Y G17632T G20398A A23403G A26530G C27945T G28079T C29870-

EPI_ISL_526891
 2020-06-11 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0777/2020
 A1- C241T C1059T C3037T C14408T A18280G A23403G G25563T C25658T A29878M

EPI_ISL_526892
 2020-06-11 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0778/2020
 C241T C1059T C3037T C14408T A18280G A23403G G25563T C25658T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_527890
 2020-06-11 2020-09-05
 Nigeria hCoV-19/Nigeria/ON752-CV144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C2939T C3037T C14408T T23042C A23403G C23410A G25563T GCCTTT27798- C27920T C29485T TTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29822-

EPI_ISL_535305 MT997949
 2020-06-11 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1264/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535308 MT997952
 2020-06-11 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1267/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535314 MT997958
 2020-06-11 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1273/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T G21761T A23403G G25563T C27964T T28282C CG29750- AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535315 MT997959
 2020-06-11 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1274/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C C28531T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535316 MT997960
 2020-06-11 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1275/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14372T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535319 MT997963
 2020-06-11 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1278/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535320 MT997964
 2020-06-11 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1279/2020
 C241T G376T C1059T C1758T G2447T C3037T T4264K C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535321 MT997965
 2020-06-11 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1280/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535325 MT997969
 2020-06-11 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1284/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535329 MT997973
 2020-06-11 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1288/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535331 MT997975
 2020-06-11 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1290/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535333 MT997977
 2020-06-11 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1292/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A18336G A18793T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535335 MT997979
 2020-06-11 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1294/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535336 MT997980
 2020-06-11 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1295/2020
 C241T G376T C1059T C1758T G2447T C3037T C3787T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_539543
 2020-06-11 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2013591/2020
 C241T C3037T A5533G C14408T C16343T A17844G A23403G GGG28881AAC

EPI_ISL_539544
 2020-06-11 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2013592/2020
 C241T C3037T C14408T A23403G C24904T GGG28881AAC

EPI_ISL_540950
 2020-06-11 2020-09-22
 Peru hCoV-19/Peru/UCA-UPCH-0067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T G10265A C10440T C14408T G19566T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_541729
 2020-06-11 2020-09-23
 India hCoV-19/India/MH-NIV-59437/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A A10588C C14408T A23403G A24803G G25726T G26350A T26354C GGG28881AAC C29739T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541730
 2020-06-11 2020-09-23
 India hCoV-19/India/MH-NIV-59448/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A A10588C C14408T A23403G A24803G G25726T C26343T T26354C CG26356TT T26359C GGG28881AAC C29739T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_543197
 2020-06-11 2020-09-23
 United States hCoV-19/USA/TX-HMH-3792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C12348T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543199
 2020-06-11 2020-09-23
 United States hCoV-19/USA/TX-HMH-3795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2102T C3037T C5339T C6606T A8580T C10188T G12332T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543221
 2020-06-11 2020-09-23
 United States hCoV-19/USA/TX-HMH-3817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15438T A18818G A23403G G25494T G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543227
 2020-06-11 2020-09-23
 United States hCoV-19/USA/TX-HMH-3823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2945A C3037T T5299G C14408T C15951T A23403G A24710T G24998C T27212C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543229
 2020-06-11 2020-09-23
 United States hCoV-19/USA/TX-HMH-3825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3286A C14408T T16993C C17550T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543235
 2020-06-11 2020-09-23
 United States hCoV-19/USA/TX-HMH-3832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2102T C3037T C5339T C6606T A8580T C10188T G12332T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543237
 2020-06-11 2020-09-23
 United States hCoV-19/USA/TX-HMH-3834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T19284C A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543239
 2020-06-11 2020-09-23
 United States hCoV-19/USA/TX-HMH-3836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C280T G1890A C3037T C14408T C20474T A23403G C25708T G27074T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543246
 2020-06-11 2020-09-23
 United States hCoV-19/USA/TX-HMH-3843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544003
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544004
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1885C C3037T A10323G G11083T C14408T T15276A A23403G G25563T G28842T C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544005
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T A23403G G25563T G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544006
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T C14408T G15243T T22196C A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544007
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544008
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2618G C3037T A4899G G10642T G11146T G11417T C13774T C14408T C15540T C20474T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544010
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6926T C11916T C14408T C18998T A23403G G25563T T28250C G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544011
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544014
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C26461T C27964T C28472T C28531T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544018
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T C6278T C10319T C14408T G17509T C17894T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544019
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T C7926T T9742C C14408T C17639T A23403G C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544020
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4890T C5055T C14408T T20769C C22444T G23224T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544021
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1376T C3037T T12247C C14408T A18887G C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544022
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T C3037T T3808C C14408T C19011T A23403G G26193T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544042
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C11979A C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544045
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1836T C3037T C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544046
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9559T C14408T C19862T A20268G C23248T A23403G C27503A C28854T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544047
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14870G C23185T A23403G G28179C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544048
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544051
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13680T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544053
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T5159C T9742C C14408T C17639T A23403G T24733C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544054
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T G21624T A23403G A26186G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544097
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13975T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544098
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C10755T C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544100
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544101
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4158T C7011T C9967T G10902A C14408T A23403G G25563T C27964T C29281T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544105
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3738T C14408T A23403G C27434T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544106
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14097T C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544110
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12076T C14408T A23403G G25563T C25844T G25907T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544112
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T G17331T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544113
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544114
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544115
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544117
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11464A C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544118
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T19284C A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544120
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1911T C3037T C6843T C9943T T10084C C10319T C14408T T17353C C17372T A23403G G25563T G25641T A26535C G27364T C27964T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836T

EPI_ISL_544123
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C14408T A18751G A23403G G25563T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544164
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T8134C C10319T C12374T C14408T C15763T C21638T A23403G G25563T C27964T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544166
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C657T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544190
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10626T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544196
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G5903A C10156T C14408T A23403G C25427T G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544200
 2020-06-11 2020-09-24
 United States hCoV-19/USA/TX-HMH-3446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553362
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954CA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553363
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A39C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T G9049T C13430T C14408T C16289T A23403G G25429T G26230T C26681T A29385G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553379
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A5B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553429
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A37E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T A8450G G9473A G10097A C14408T C14605T G17721T C18032T T19107Y C21614T TTA21991- A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553431
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954B8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14178T C14408T G22104T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553444
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954C5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3464T C14408T G20931A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553448
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954A9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553451
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954FCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553452
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954F8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G8353A C8950T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553469
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954B7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553491
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T22774C A23403G C23683T C28674T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553495
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9549EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7878C G10097A C14408T T16348C C21575T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553498
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954BC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5743A C9491T C14408T A23403G C28313T GGG28881AAC C28892T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553540
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954E64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4006A T7666G C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553555
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954ABB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3647G C9039Y C13730T C14408T A23403G C24378Y G25429T G28851T TACGATCGAGTGTACAGTGAACAATGC29748- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553576
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13111C AT13388CA C14408T C15237T A18735G A23403G G25784T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553608
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954FE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T -11072TTC C14220T C14408T T19893C A23403G C24370T C25728T GGG28881AAC C29409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553630
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954FF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553632
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952D96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20429T G20995T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553633
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9530D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T G18462K A20268G C21306T C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553634
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952DD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G11083T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553637
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95308D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2939T C3037T C4455T C13965T C14408T C14786T G21606T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553644
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9538FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C843T C3037T C8683T C13335T C14408T C14676T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553645
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952E57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G C28725Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553653
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952E93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553655
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952E2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T C26681T A29385G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553661
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952D69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553668
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952EEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C140Y C241T C1419T C3037T C4158T C8318A C14408T G18859T G19429K G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553670
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952F72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553671
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952F36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553672
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952F81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G C25517Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553673
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952EDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553677
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952FFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20425G C20429Y G21641T A23403G C25945A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553679
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952E66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553680
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952F27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11572T C14408T A23403G G25244T G28857T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553681
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553685
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95309C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6843T C11345T C14408T G20940T C22208T A23403G C27509T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553686
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952E48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6843T C11345T C14408T G20940T C22208T A23403G C27509T GGG28881AAC G29674T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553693
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9530C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553694
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952F09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553695
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952DA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G11083T C14408T G18859T G21624T A23403G GGG28881AAC G29648K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553696
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95306F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C1915T C3037T G6476T C8140T G10097A G11083T T13216G C14408T C18606T A23403G C23731T C25708T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553697
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952E84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6723T C8290T C14408T A23403G GTT26155- C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553763
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954AF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323A C14408T C16859T C20555T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553877
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952BF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T A2641G C3037T C3622T C14408T C14676T T15385Y A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553895
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9527B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T G2117T C3037T G13520T C14408T T15978C A23403G C27925T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553918
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9561D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815T C3037T A3569G G3849T A6211G A8659G C14408T C19488T A23403G GGG28881AAC G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553932
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T G2180A C2416T C3037T T6025C G8371T G10533T G11083T C14408T G15766T C22477T A23403G G25563T T25679C G29783T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553933
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952A26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3647G C13730T C14408T T21314Y A23403G C24715A G25429T G28851T TACGATCGAGTGTACAGTGAACAATGC29748- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553950
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T606Y C3037T G4006A C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553951
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9527F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12231Y A13992R C14178T C14408T G22104T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553955
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-957915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C841T C1714T C3037T C8092T C14408T G18816T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553956
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-95749C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2112C C3037T T5926A T14331C C14408T G22973C A23403G C25350T G28487A G29745T G29755T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553968
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95281D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3647G C13730T C14408T A23403G G25429T G28851T TACGATCGAGTGTACAGTGAACAATGC29748- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553975
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9527A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553976
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-952CD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A489G C3037T T5465C G6387A C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553992
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-955ECD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T G11083T C14408T A23403G GGG28881AAC G29825A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553994
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-9576F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335Y G1946T C3037T A3569G A6211G A8659G C14408T T18438C C19488T A23403G C26681T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554017
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95282C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554023
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95276B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4006A T7666G C14408T C21637T A23403G G25769K A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554024
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-95755D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C3037T A10286G G10642T G14364A C14408T A23403G C28603T G28899T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554026
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-9575E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3403T A6308C C6578T C14408T T19839C TGG21294AAA A23403G G25793T C26681T G26834A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554035
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952BE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C7764T C14408T A19810G G21830T G22112A A23403G G24236T C27092T C27679T GGG28881AAC C29466T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554039
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952CF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A489G C3037T T5465C G6387A C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554058
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-957924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C841T C1714T C3037T C8092T C14408T T15978C G18816T A20268G C21772T A23403G C28854T A29089C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554062
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952A17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10833T C14408T T15723C C19374T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554070
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95284A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554091
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955E81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323A C14408T C16859T C20555T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554093
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9527D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G8353A C8950T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554100
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-957371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16342G C18877T G23401T A23403G G25563T G25617T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554102
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G11906C C14408T A23403G C23731T C26198T G28580T C28720T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554106
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95277A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3984T G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554107
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-955EDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T C21727T C22450Y A23403G T26446Y C28253Y C28744Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554114
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9527C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G8353A C8950T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554117
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95280E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14178T C14408T G22104T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554152
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-957AD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C13824Y C14408T A23403G C23731T GGG28881AAC T29410C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554179
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-9571C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7258C T8941C G12911A C14408T G15438T A20268G A23403G T27977C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554214
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-957274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1490A C3037T C9979T C14408T G22335T A23403G C25613T C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554228
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-957599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T T7852C C14408T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554231
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-957A7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T G1946T C3037T A3569G A6211G A8659G C14408T T18438C C19488T A23403G C26681T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554256
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-95707A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T14744C C19554T C21781T A23403G G24098T G25217T G25563T G26775T C29415T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554264
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-957B97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C841T C1714T C3037T C8092T C14408T T15978C G18816T A20268G C21772T A23403G C28854T A29089C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554327
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95317B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C1915T C3037T G6476T C8140T G10097A G11083T T13216G C14408T C18606T A23403G C23731T C25708T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554329
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G A28691C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554343
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9532A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554345
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95367C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554352
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95332A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G11083T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554364
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11074T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554385
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C1059T C3037T C14408T C18744T A18978G A23403G G25563T TTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCAC27554- A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554388
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95323C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2583T C3037T C9430T G10097A C14408T C17012T C22227T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554398
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2156T C3037T A9433T G10265A C14408T A19650G A20067T A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554410
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2983T C3037T C7834T C14408T C16997T C17336T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554413
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95316C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554440
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95325A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623C C3037T C4577T T7009A C14408T A23403G C27046T C27143T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554443
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5826Y C11074T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554447
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952FAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554452
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9532B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554462
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-95320F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2836T C3037T T3049C A12329C C14408T G21624T A23403G G27877T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554465
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9531A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9630C C14408T A17460G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554473
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554495
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95313F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554501
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952FDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T C18681T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554513
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952F63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623C C3037T C4577T T7009A C14408T G17058T G18756T A23403G C26858T C27046T C27143T T28026C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554536
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C24700A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554544
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9533EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554546
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G A28691C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554564
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95330C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554565
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-955856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C775T C3037T C9438T C14408T G21160A A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554607
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G922T C3037T C6541T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554614
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9532D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554628
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-9585E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G C6151T A6211G A8659G G12514T C14408T C18171T C19488T A23403G C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554668
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-9584C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554670
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-9585A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G C6151T A6211G A8659G G11596A G12514T C14408T C18171T C19488T A23403G C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554684
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-9587ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1087G C3037T C7029T A10948G C14408T A22975G A23403G A26069G C27542T C28791T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554731
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-95862C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T A23403G C25844T C28087T G28557T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554775
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-95839E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T C3037T C4002T T4258G G10097A C13536T C14408T A23403G C23731T G25012T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554785
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-9586D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C T11078C C14408T G20718T A23403G C26029A G28178T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554814
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-958589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T C3037T A3569G G3849T G5023T A6211G A8659G C14408T C19488T G20953T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554851
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-9584F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC T29410C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554919
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-95AAD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554994
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AB0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T23581C C26710T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555005
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-95AB2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555325
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952B32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T134C C241T C3037T A4926C G11083K C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555371
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-952C4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555389
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952C7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T -11072TTC C14220T C14408T T19893C A23403G C24370T C25728T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555396
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952C6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3647G C13730T C14408T A23403G G25429T G28851T TACGATCGAGTGTACAGTGAACAATGC29748- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555406
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-952C5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T C21727T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555409
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952C99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555431
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952B7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555448
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95457E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T G28559K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555461
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952B50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555520
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95ACDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10513C C11669T C14408T C17678T G19086T G22484T A23403G T27851C GGG28881AAC C29541T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555623
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AB85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555728
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95ACEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555731
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95ABA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC G29773K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555767
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B98D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3177T C3622T G4510T C14408T G19481T A23403G G25654T C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555770
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555771
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6013T C14408T C21637T A23403G G25302T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555780
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6013T C14408T C21637T A23403G G25302T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555782
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A9BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C11919T C14408T A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555795
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A63C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7291G C7423T C9979T T10513C A11782R C14408T G15907K A23403G C26447T T27851C GGG28881AAC C29077T C29541T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555796
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94BB78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555799
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A65A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T G704A C3037T C5051T C14408T A23403G A24425C GTT26155- GGG28881AAC G29781T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555802
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94BB69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555805
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B39E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555811
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C3037T C6990T G9584T C10702T C14408T T16993C A23403G C25836T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555817
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A99D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555818
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B6B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C3037T C6990T G9584T C10702T C14408T T16993C TTA21991- A23403G C25836T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555821
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94BB4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C10279T C14408T C22858T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555823
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B3BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C2508Y C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555825
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94AA03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11743R C14408T A23403G G27364T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555830
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A9F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T G25563A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556306
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94AF7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C21428Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556310
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-949C2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556311
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C4672Y C8318A C8782T C14408T G17058T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556327
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A05C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A12410G C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556331
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-949B2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556333
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B6A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G8353A T9349C G10097A C12369T C13536T G13897T C14408T G17418A G20102T A23403G C23731T T24184C T27720C GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556335
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9487B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C3817T G13503T C14408T A23403G G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556336
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A6F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556343
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G A27918R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556345
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94AF13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556355
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A4F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T G22014T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556356
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A71B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T A9433T G10265A G11335K C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556358
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A07A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2908G C3037T C14408T G21606T A23403G C24374T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556359
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-949D65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556362
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1800A G2035T C3037T T10257C C14408T A23403G C23854T G25972A G27842T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556365
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A06B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C3096Y C4815Y C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556369
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A57B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3228G C6633T C14408T G17014T A23403G C23481T C25777T C26947T G27746T C28725T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556370
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18511T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556375
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A4E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556379
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94AF22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556381
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21306T C21614T A23403G C28854T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556389
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94AEDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556390
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94AF40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17280T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556391
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B8EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1976R C3037T C8991T C11289T C14408T T15051C A20255G A23403G C23896T G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556395
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A04D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9803T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556400
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A56C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556415
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B8F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8950Y C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556418
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B5B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556424
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94AA8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C G11029A C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556426
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-949C3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556427
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B5C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G9479T G11083T C14408T A20268G C21614T A23403G C24700A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556431
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21123T A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556437
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94AF04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556448
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A4BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T C26681T C29167T A29385G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556450
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A6D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2407T C3037T A6013T C14408T C21637T A23403G G25302T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556452
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94AF6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556454
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94AEE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556456
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94ABC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556457
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94AEF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556465
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B1C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11335T C14408T C16289T A23403G G25429T C26681T A29385G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556468
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A03E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556470
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G C28435T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556477
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94999E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556480
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94AEBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556483
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-949C4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556486
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G5513A A6851G G8371T G11083T C14408T G20616T G22335C C22477T A23403G G25563T G26918T C27889T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556493
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A C9474T A10948G C14408T A20136G A23403G C24138T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556507
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94ABF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C19454T T23255C A23403G A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556513
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B1B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11335T C14408T C16289T C21595T G22014T A23403G G25429T C26681T A29385G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556515
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94AF31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558251
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-576ECA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C7119T A9713G T13827C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558254
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-58FF34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C13548T C14408T C21017T A23403G G28371T GGG28881AAC A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558255
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-59460A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T A9052G G13520T C14408T T15978C A23403G C27849T C27925T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558266
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-576F4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2074W C3037T C4782T C14408T A23403G G26918T C28695T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558296
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-5932DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558313
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-5678CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A18108R G18169A A23403G C26606T C28290T G29717A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558318
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-576ED9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C7119T T9292C A9713G T13827C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558319
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-57024C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19999T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558331
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-5974EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6336T C8683T C13335T C14408T A20268G A23403G G26173T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558351
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-570446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19999T A23403G T25502C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558352
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-58FB7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558357
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-599474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558359
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-598123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C775T C3037T C9438T C14408T G21160A A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558363
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-590BF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T C6031T A9433T G10265A C14408T A19650G G21538A A23403G G25407T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558365
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-56DF0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C7119T T9292Y A9713G T13827C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558369
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-567D0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18169A A23403G C26606T C28290T G29717A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558376
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-592763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T A9052G G13520T C14408T T15978C A23403G C27849T C27925T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558380
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-56B89D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6843T C11345T C14408T G20940T C22208T A23403G C27509T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558382
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-57A163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878A C3037T A6366T C14408T C14583T G19072T G22349T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558384
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-55F322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13153R C14408T G19999T A23403G G28747T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558386
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-56BFD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T108C C241T G1820A C3037T C14408T T19839C A23403G C26681T G28001T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558400
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-594FF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25217T C25350T C25731T G25906K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558914
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-50FCEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3199C A12949G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558932
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-5149CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G21624T A23403G G25266T G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558965
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-50E38C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16828C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558970
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-515012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7777T C14408T A23403G GGG28881AAC G29745C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559011
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-50A1D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C4752T C8152T C11020T C14408T C22000T A23403G C27679T G28809T GGG28881AAC T29698G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559028
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-5104B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2488T C3037T C3551T T5573C C6380T C7164T C7420T G11801A C12781T C14408T T19839C A23403G G24586T T25202K G25552T GGG28881AAC T29607C G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559081
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/MILK-5135E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T G1729T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T C26570Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559322
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49BB50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4547G C9665T C12473T C13665T C14408T C18167T C19718T C21952T A23403G A26402G C27046T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559327
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49BA80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559328
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49B5E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559329
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49BE84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559330
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49B525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G9190T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559332
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49BDD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559340
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49B631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7973Y A9433T G10265A C14408T C17410T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559347
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49B9B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559360
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49B74D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G9190T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559438
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A875C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559462
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49C7D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16101T A18616G A23403G C27920T GGG28881AAC T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559473
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A8428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T C17676T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559476
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A7C4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11279C T14331C C14408T A15278G A23403G C25350T T27384C G28487A C29535T G29764T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559488
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A86E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C900T C3037T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559493
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A8367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815Y C3037T G3896T C8664Y A11991R C12528Y C14408T G14430T A22766G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559501
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49CB04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559506
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A80BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25217T C25350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559510
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A7A09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559533
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A8A44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GGG28881AAC C29203T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559535
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A8376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T C17676T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559542
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A8570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T C6031T A9433T G10265A C14408T A19650G G21538A A23403G G25183T G25407T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559571
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AAE28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6336T G6742K C8683T C13335T C14408T A20268G A23403G G26173T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559579
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AE835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G A28691C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559580
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A7C21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559582
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A7C12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A G11065C C14408T A19650G G21538A A23403G G24095A G25407T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559593
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AAC1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130T C3037T C3170T C6336T C11572T C14408T C19961T G20006T G22344T A23403G C27673T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559596
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A7C03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C13536T C14408T C21639T A23403G C23731T C25731Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559599
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A82B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T C17676T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559629
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A8868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559635
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A822E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A22766G A23403G C25916T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559645
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A7D88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C171A C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559656
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A7EEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559657
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49C991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A G11065C C14408T A19650G G21538A A23403G G24095A G25407T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559661
 2020-06-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A869B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T G10097A C14408T C14605T G17721T C18032T C21614T TTA21991- A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560560
 2020-06-11 2020-09-29
 United States hCoV-19/USA/AK-PHL463/2020
 ATTAAAGGTTTATACC1- C241T C2143T C3037T C6336T C14408T A20268G G21800T A23403G G25244T C29370G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_560561
 2020-06-11 2020-09-29
 United States hCoV-19/USA/AK-PHL473/2020
 ATTAAAGGTTTA1- G61T C241T C3037T C3045Y T7991K C12733A C14408T A14421M C16457T G21452T C21658T A23403G T27409C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_560563
 2020-06-11 2020-09-29
 United States hCoV-19/USA/AK-PHL479/2020
 ATTAAAGGTTTA1- C66T C241T A538G C1059T C3037T T4324G T9107C G10262T C14408T C23029T A23403G G25563T T26543A A28254G C29358A C29466T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_568996
 2020-06-11 2020-10-02
 France hCoV-19/France/IHU-0933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C10582T C14016T C14195T C14408T G19109T C22591T A23403G G25563T C26645T C27804T C28830A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT940483
 2020-06-11 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_471151
 2020-06-12 2020-06-19
 United States hCoV-19/USA/WI-GMF-06001/2020
 C241T C1059T C3037T C4534Y C5526T C9866T C14408T A14747G A18195G A20755C G22017T A23403G G25563T C27005G

EPI_ISL_471152
 2020-06-12 2020-06-19
 United States hCoV-19/USA/WI-GMF-06054/2020
 C241T C715T C1059T G2036T C3037T C11916T C14408Y G23311T A23403G A23586G G25563T AA29865CG

EPI_ISL_473507
 2020-06-12 2020-06-23
 United Kingdom hCoV-19/England/CAMB-1B4D03/2020
 C241T C3037T C8605T C14408T C17002T A23403G G26918T GGG28881AAC T29464C

EPI_ISL_476514
 2020-06-12 2020-06-25
 Senegal hCoV-19/Senegal/63742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1625T C3037T G3431T C14408T T16404C A20268G G22706T A23403G C28833T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_476867 MT675950
 2020-06-12 2020-06-26
 India SARS-CoV-2/human/IND/GBRC229a/2020
 C241T C2836T C3037T C5730T C14408T C18877T T21703G C22444T A23403G G25563T C26735T C28854T C29750T

EPI_ISL_476868 MT675952
 2020-06-12 2020-06-26
 India SARS-CoV-2/human/IND/GBRC229b/2020
 C241T A2292C C2836T C3037T G4300T C14408T C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_476874 MT676288
 2020-06-12 2020-06-26
 India SARS-CoV-2/human/IND/GBRC233a/2020
 C241T A1989G C3037T C14408T A23403G C25669T C28887T

EPI_ISL_476875 MT676290
 2020-06-12 2020-06-26
 India SARS-CoV-2/human/IND/GBRC233b/2020
 C241T A1989G C2836T C3037T C14408T A23403G G23593T C25669T C28887T

EPI_ISL_476876 MT676291
 2020-06-12 2020-06-26
 India SARS-CoV-2/human/IND/GBRC235a/2020
 C241T A2292C C2836T C3037T G4300T C14408T C18568T C18877T G21724T C22444T A23403G G25563T C29750T

EPI_ISL_476877 MT676390
 2020-06-12 2020-06-26
 India SARS-CoV-2/human/IND/GBRC235b/2020
 C241T C3037T C14408T A16512G C19154T A23403G C26735T C28854T

EPI_ISL_476878 MT676289
 2020-06-12 2020-06-26
 India SARS-CoV-2/human/IND/GBRC236/2020
 C241T C3037T C14408T A23403G

EPI_ISL_476879 MT676388
 2020-06-12 2020-06-26
 India SARS-CoV-2/human/IND/GBRC237a/2020
 C241T C3037T C5869T A10761G G13348T T14136C C14408T G22335T A23403G

EPI_ISL_476880 MT676366
 2020-06-12 2020-06-26
 India SARS-CoV-2/human/IND/GBRC237b/2020
 C241T A2292C C2836T C3037T C14408T C18568T G21724T G22335T A23403G C29750T

EPI_ISL_476881 MT676369
 2020-06-12 2020-06-26
 India SARS-CoV-2/human/IND/GBRC238a/2020
 C241T A1989G C3037T C14408T A23403G C25669T C28887T

EPI_ISL_476882 MT676367
 2020-06-12 2020-06-26
 India SARS-CoV-2/human/IND/GBRC238b/2020
 C241T A2292C C2836T C3037T G4300T C14408T C18568T G21724T C22444T A23403G C28887T

EPI_ISL_477133
 2020-06-12 2020-06-28
 Bangladesh hCoV-19/Bangladesh/CHRF_0023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T G8003K C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477183
 2020-06-12 2020-06-29
 India hCoV-19/India/GBRC234/2020
 C241T C3037T T6745C G7798T C14408T G14829T A18802C A23403G GTTA26158- G26951T

EPI_ISL_478396
 2020-06-12 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A0D38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G376T C3037T C14408T G18020A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479362
 2020-06-12 2020-06-30
 United Kingdom hCoV-19/Wales/PHWC-164C41/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T C9438T C14408T A23403G GTT26155- C27630T GGG28881AAC G29777T

EPI_ISL_479403
 2020-06-12 2020-06-30
 United Kingdom hCoV-19/Wales/PHWC-164F75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C

EPI_ISL_480701 MT745673
 2020-06-12 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23063T A23403G C26984T T28196C GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_480750 MT745719
 2020-06-12 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C13275Y C14408T C16247T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480756 MT745724
 2020-06-12 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C13356Y C14408T A23063T A23403G C26984T T28196C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_480757 MT745725
 2020-06-12 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23063T A23403G C26984T T28196C GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_481203
 2020-06-12 2020-07-02
 India hCoV-19/India/ILSCV35614/2020
 C241T C1059T C3037T C14408T C16260T G22346T A23403G G25563T C28821A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_481204
 2020-06-12 2020-07-02
 India hCoV-19/India/ILSCV35615/2020
 C241T C1059T C3037T C14408T C16260T G22346T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_481205
 2020-06-12 2020-07-02
 India hCoV-19/India/ILSCV35750/2020
 C241T C3037T C14408T AA21550CT A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_482886
 2020-06-12 2020-07-06
 France hCoV-19/France/OCC-28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G227A C241T C2416T C3037T C3784T C5544T G8371T C14408T G16075T A17192C A23403G C23635T G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_482889
 2020-06-12 2020-07-06
 France hCoV-19/France/OCC-31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T C3784T G8371T C14408T G16075T A17192C A23403G CCT23453TTC C23635T G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_483622
 2020-06-12 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_175/2020
 C241T A1163T C3037T C4113T C4321T C14408T A23092G A23403G C27881T GGG28881AAC

EPI_ISL_483623
 2020-06-12 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_176/2020
 C241T A1163T C2910T C3037T C3961T G5950T G13201T C14408T C22858T A23403G C27389T GGG28881AAC G29254T

EPI_ISL_483624
 2020-06-12 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_177/2020
 C241T A1163T C3037T A8026G C11572T C14408T A23403G A26319G C27213T GGG28881AAC

EPI_ISL_483627
 2020-06-12 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_174/2020
 G199T C241T A1163T C3037T A8026G C9502T G11083T C14408T A23403G C26895T GGG28881AAC

EPI_ISL_483649
 2020-06-12 2020-07-08
 Switzerland hCoV-19/Switzerland/150001_407_A02_plus/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C14408T C19524T G22205C A23403G C25731T C28253T GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483829 MT758197
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC248a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T T15163C G15906T G18636T C18877T G22104C A23403G G25563T C26735T C28744T G28851T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483830 MT758202
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC248b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2292C C2836T C3037T C14408T T15163C G15906T G18636T C18877T G22104C A23403G G25563T C26735T C28744T G28851T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483831 MT740617
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC249a/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1585T C2836T C3037T A12595G C14408T C18877T G21724T C22444T A23403G G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483832 MT740618
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC249b/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A2292C C2836T C3037T G4300T C13077T C14408T A16512G C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C28854T C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483833 MT740619
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC250a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T C12076T C14408T C18877T C22444T A23403G G23593T G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483834 MT740684
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC250b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2292C C2836T C3037T G4300T C14408T C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C28854T C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483835 MT740686
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC251a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T G15535T G17721T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483836 MT740688
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC251b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2292C C2836T C3037T C14408T G15535T C18568T G21724T A23403G C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483837 MT740706
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T G362A C2836T C3037T C7334T C14408T C18877T G21724T C22444T G22468T A23403G A23632C G25563T C25638T C26735T G28562A C28854T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_483838 MT758213
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC253a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2292C C2836T C3037T C14408T C18568T C18877T G21724T C22444T A23403G G25563T C26735T G28562A C28854T C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483839 MT758215
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC253b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G362A C2836T C3037T G4300T C7334T C14408T A16512G C18877T C19154T G21724T C22444T G22468T A23403G A23632C G25563T C25638T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483840 MT740708
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC254a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C304T C958T C2836T C3037T C14408T C18877T C22444T C22987T A23403G C23625T G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483841 MT740717
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC254b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2292C C2836T C3037T G4300T C14408T C18568T C18877T G21724T C22444T C22987T A23403G G25563T G25793T C26735T C28087T C28854T C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483842 MT740723
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC255a/2020
 ATTAAAGGTTTATACCTT1- C241T G1820A C2836T C3037T G9479T C14408T C18877T C21597T C22444T A23403G G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483843 MT740724
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC255b/2020
 ATTAAAGGTTTATACCTT1- C241T G1820A C2836T C3037T G9479T C14408T C18395T C18877T C21597T C22444T A23403G G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483844 MT758240
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC256a/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C3737T G4866T A6748G C8043T C14408T C14425A T21890C A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483845 MT758314
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC256b/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2836T C3037T A6748G C14408T C18568T G21724T C22444T A23403G G25563T C26735T C27928A C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483846 MT758346
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC257a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2292C C2836T C3037T C7334T C14408T C18568T C18877T G21724T C22444T A23403G G25563T C26735T C28854T C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483847 MT758375
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC257b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T G4300T C14408T A16512G C18877T C19154T G21724T C22444T G22464T A23403G A23632C G25563T C25638T C26735T G28562A C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483848 MT740820
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC258a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2292C C2836T C3037T C14408T C18568T C18877T G21724T C22444T A23403G G25563T C26735T C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483849 MT740896
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC258b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T G4300T C5869T C14408T A16512G C19154T G20962T A23403G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483856 MT758471
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC263a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2292C C2836T C3037T G4300T A16512G C18568T C18877T G21724T C22444T A23403G G25563T C26735T C28854T G28878A C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483857 MT758683
 2020-06-12 2020-07-08
 India SARS-CoV-2/human/IND/GBRC263b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2292C C2836T C3037T C8782T C14408T C18568T C18877T C19154T G21724T G22468T A23403G T28144C G29742A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483896
 2020-06-12 2020-07-08
 United Kingdom hCoV-19/England/BIRM-6088E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A19946G T21808C A23403G C23731T G24193C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484245
 2020-06-12 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6E96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T G18055A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484249
 2020-06-12 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6ED2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T C16057T C18131T A23403G C23731T T23849C T26442C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484451
 2020-06-12 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C44FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T T4714C G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484484
 2020-06-12 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C9A8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1267T C2910T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484511
 2020-06-12 2020-07-08
 United Kingdom hCoV-19/England/SHEF-D0458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484851 MT750060
 2020-06-12 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1471T C3037T A7807G C11916T A12820G C14408T A23403G G25563T C29733T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485715
 2020-06-12 2020-07-09
 Senegal hCoV-19/Senegal/64033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3956G C9559T C14408T C15324T A23403G A25347C A29147G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_485716
 2020-06-12 2020-07-09
 Senegal hCoV-19/Senegal/64076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G219T C241T C1059T T1666C C3037T G7760A G11083T C11152T C14408T C14770G T17793C G17964T G19072T T21980C A23403G G25563T G29227T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_490851
 2020-06-12 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-166201/2020
 ATTAAAGGTTT1- C241T C3037T C3695Y C9438T C14408T G21160R A23403G T27342Y GGG28881AAC G29777T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_491262
 2020-06-12 2020-07-16
 Portugal hCoV-19/Portugal/IGC4549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4409T C14408T A23403G C27610T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491263
 2020-06-12 2020-07-16
 Portugal hCoV-19/Portugal/IGC4560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7119T C14408T A23403G G25677T A26019C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491264
 2020-06-12 2020-07-16
 Portugal hCoV-19/Portugal/IGC4570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7119T C14408T G18973T A23403G G25677T C25836T A26019C GGG28881AAC GCCACGCGGAGTAC29737- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494015
 2020-06-12 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C775T A1547D C3037T C9438T A13780W C14408T G21160R A23403G GGG28881AAC G29777T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494021
 2020-06-12 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1665DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A489G C3037T T5465C G6387A C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494082
 2020-06-12 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166B06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A489G C3037T T5465C G6387A C14408T C19938T G21624T A23403G G24102A AA25800TT GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495079 MT799972
 2020-06-12 2020-07-22
 India SARS-CoV-2/human/IND/GBRC323a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2164T C2836T C3037T C10969T C14408T C18877T C22444T A23403G G25563T C26947T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495080 MT799967
 2020-06-12 2020-07-22
 India SARS-CoV-2/human/IND/GBRC323b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C10969T T20751C C22444T A23403G C26735T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495236
 2020-06-12 2020-07-22
 India hCoV-19/India/CCMB_M750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C9693T C10815T C14408T C16626T A23403G GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495238
 2020-06-12 2020-07-22
 India hCoV-19/India/CCMB_M772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3259T G4354A C6573T G13118T C14408T A23403G G25135T C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495240
 2020-06-12 2020-07-22
 India hCoV-19/India/CCMB_M780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3259T G4354A C6573T G13118T C14408T A23403G C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495241
 2020-06-12 2020-07-22
 India hCoV-19/India/CCMB_M785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A4372G C5700A C9693T C14408T C16626T G19947T A23403G A27662G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495247
 2020-06-12 2020-07-22
 India hCoV-19/India/CCMB_M812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3259T G4354A C6573T C14408T A23403G C25528T A26178G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495249
 2020-06-12 2020-07-22
 India hCoV-19/India/CCMB_M818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C832T C3037T C4423T C5700A C9693T C10815T C14408T C16626T A23403G GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495253
 2020-06-12 2020-07-22
 India hCoV-19/India/CCMB_M840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3652G G4354A C6573T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495256
 2020-06-12 2020-07-22
 India hCoV-19/India/CCMB_M844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3259T G4354A C6573T G13118T C14408T C20759T A23403G C24023T C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495257
 2020-06-12 2020-07-22
 India hCoV-19/India/CCMB_M845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9693T C14408T A23403G G24959T G27281T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_496931 MT831769
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2299/2020
 ATTAAAGGTTTAT1- C241T C3037T C12513T C14408T C14768T C15933T G16968T T19839C A23403G C27294T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496932 MT831782
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2300/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A21215G A23403G G23628T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496934 MT831692
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2302/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496935 MT831753
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2303/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496936 MT831826
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2304/2020
 ATTAAAG1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_496945
 2020-06-12 2020-07-24
 United States hCoV-19/USA/WA-S2313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C14408T C15933T G16968T C19688T T19839C A23403G G27676T G28851T GGG28881AAC G29764T C29784T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_496974 MT831795
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2342/2020
 ATTAAAGGTTTAT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496975 MT831587
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2343/2020
 AT1- C241T C3037T C5052T C14408T C15933T G16968T T19839C C22088T A23403G C25710T G25838T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496976 MT831856
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2344/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496977 MT831724
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2345/2020
 AT1- C241T C3037T A4197G G9479T C14408T G16813A A23403G G24368C T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_496978 MT831658
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2346/2020
 ATT1- C241T G1111A C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC A29507G C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_496979 MT831900
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2347/2020
 ATTAAAGG1- C241T C3037T C14408T C14768T C15933T G16968T T19839C G21724T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_496984 MT831649
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2352/2020
 AT1- C241T C1387T T1978C C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_496985 MT831588
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2353/2020
 AT1- C241T C3037T T3256C G8075A C12043T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496987 MT831691
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2355/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497010 MT831705
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2378/2020
 ATTAAAGGTTTAT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497011 MT831773
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2379/2020
 AT1- C241T C1060T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_497012 MT831740
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2380/2020
 AT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497013 MT831825
 2020-06-12 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2381/2020
 ATTAAAGGTT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_501091
 2020-06-12 2020-07-30
 United States hCoV-19/USA/WA-UW-10613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T T8883C TT8885WA G12080A TA14222GC C14408T A23403G G25563T G29553A A29700G -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_508489
 2020-06-12 2020-08-04
 India hCoV-19/India/TF1/2020
 ATTAAAGGTT1- C241T T1947C C3037T C14408T C16178T C18877T C22444T A23403G G25563T C26735T G27217T C28854T T29595C G29868A

EPI_ISL_508716 MT834671
 2020-06-12 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0513/2020
 A1- C241T C3037T C14408T T22843C A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_508717 MT834672
 2020-06-12 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0514/2020
 A1- C241T C3037T C14408T T22843C A23403G C25452T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_508718 MT834673
 2020-06-12 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0515/2020
 A1- C241T C3037T C14408T T22843C A23403G GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_509633
 2020-06-12 2020-08-05
 Spain hCoV-19/Spain/COV005137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1601A C3037T C5784T T7897C C14408T A20268G A23403G C23664T C27982T G29734C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_510866
 2020-06-12 2020-08-07
 Sweden hCoV-19/Sweden/20-52025/2020
 C186T C241T C3037T C3717T G6337T C14408T G22708T A23403G G27147T GGG28881AAC

EPI_ISL_511842
 2020-06-12 2020-08-08
 United States hCoV-19/USA/CA-IGI-0088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T A6716G G11596T C14408T A20604G A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_512070 MT940472
 2020-06-12 2020-08-10
 India SARS-CoV-2/human/IND/GBRC334a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2705G C8782T G14500T G22468T C24358A T27222C T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_512071 MT940473
 2020-06-12 2020-08-10
 India SARS-CoV-2/human/IND/GBRC334b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2705G C8782T C11758T G14500T C18877T G22468T A23403G C23506T T28144C G28878A G29742A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_512459
 2020-06-12 2020-08-11
 United Kingdom hCoV-19/Scotland/CVR3908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10448T C10798A C13862T C14408T A23403G G23593T C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512662
 2020-06-12 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T A5874G G7223A G10360A C14408T A23403G T24163C G26063T C26894A GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_514168 MT890301
 2020-06-12 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0822/2020
 ATT1- C241T C3037T A6821G C14408T C18877T A23403G G25563T G27670T G28086C GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_514169 MT890302
 2020-06-12 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C25777T C29614T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_514892
 2020-06-12 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2489/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514893
 2020-06-12 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2490/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T A5570G C11916T C14408T C16650T A20675T A23403G G25563T G27014T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_516422
 2020-06-12 2020-08-20
 North Macedonia hCoV-19/North Macedonia/3193/2020
 ATTAAA1- C241T C313T C3037T G12310A C14408T G22203T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_521907 MT969383
 2020-06-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C13275T C14408T C16247T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_523270
 2020-06-12 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C1059T T1537C C3037T G3893A C4048T T13006C C14408T C23191T A23403G C23664T G25563T C25688T G28812C C29750T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523409
 2020-06-12 2020-08-26
 Netherlands hCoV-19/Netherlands/NH-EMC-40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1619A T2537G C3037T G12191T C13647T C14408T T16479C A23403G C28311T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523412
 2020-06-12 2020-08-26
 Netherlands hCoV-19/Netherlands/NH-EMC-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523487
 2020-06-12 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21621T A23403G GGG28881AAC C29160T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523577
 2020-06-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446T C14408T A23403G T24214C G28812T GGG28881AAC A29763G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523578
 2020-06-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446T C14408T A23403G T24214C G28812T GGG28881AAC A29763G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_526863
 2020-06-12 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0743/2020
 ATTAAAGGTTTA1- C241T C1059T A2581C C3037T G6422A C14408T C16260T A23403G C25317T G25563T G26690T C28821A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_526864
 2020-06-12 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0746/2020
 ATTAAAGG1- C241T C1059T C3037T G6422A C14408T C16260T T19345W A23403G C25317T G25563T G26690T C28821A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527011
 2020-06-12 2020-09-03
 Australia hCoV-19/Australia/NSW2410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C925T C1059T C3037T C5310T C12778T C14408T A23403G C23635T G25563T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527901
 2020-06-12 2020-09-05
 Nigeria hCoV-19/Nigeria/OY605-CV170/2020
 ATTAAA1- C241T C3037T C6449T C6638T A9019G C10833T C14408T T20103C T22318C G22346T A23403G A23586G C25546T GGG28881AAC

EPI_ISL_527905
 2020-06-12 2020-09-05
 Nigeria hCoV-19/Nigeria/OY616-CV174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6449T C6638T A9019G C10833T C14408T T20103C T22318C G22346T A23403G A23586G C25546T GGG28881AAC

EPI_ISL_535309 MT997953
 2020-06-12 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1268/2020
 C241T G376T C1059T C1758T TTA2211- G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535332 MT997976
 2020-06-12 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1291/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T G11083T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_537530
 2020-06-12 2020-09-16
 United States hCoV-19/USA/CA-UCLA-223/2020
 A1- C241T C1059T C3037T C14318T C14408T C16260T C16575T G22484T A23403G G25563T C28821A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_541731
 2020-06-12 2020-09-23
 India hCoV-19/India/MH-NIV-60033/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C8240T C14408T A23403G A26347C GCGCT26350ATTAC C26356G G26720T G27047A G28079T GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541884
 2020-06-12 2020-09-23
 Spain hCoV-19/Spain/MD-IBV-99007102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C3768T T5047C C7869T A8257G G8881A T11485C T11852G C14408T C15346A G16117A C16733T A20268G C20468T A23403G T25496C C26681T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_543040
 2020-06-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-3582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543078
 2020-06-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-3626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14676T G16935T A23403G T24211C G25647T G25690T C28831A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543099
 2020-06-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-3654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C14919T G19947T A23403G C25047T G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543191
 2020-06-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-3786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6556A C9857T C10319T C12374T C14408T G17278T C17573T A23403G G25244T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543193
 2020-06-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-3788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543208
 2020-06-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-3804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T C25658T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543214
 2020-06-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-3810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543217
 2020-06-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-3813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543219
 2020-06-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-3815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G T24640C G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543231
 2020-06-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-3827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T422C C1059T C3037T C10188T G13201T C14408T C17550T A23403G T24982C G25563T C25989T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543292
 2020-06-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-4009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C11979A C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543311
 2020-06-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-4031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543631
 2020-06-12 2020-09-23
 United States hCoV-19/USA/TX-HMH-4454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544074
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544078
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1284T A2969G C3037T G4913T C5784T G8131T C12781T C14408T C14599T C17104T C23202A A23403G G25563T G26389T C27964T T27992C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544080
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8320T C10319T C12374T C14408T G17278T C17573T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544083
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544085
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544086
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G A11356T C14408T T16950C A23403G G26730T GGG28881AAC G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544087
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T C17550T A23403G T24982C G25563T C25989T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544088
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1836T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544091
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544102
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544107
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7488T C14408T G15006C A23403G A27362G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544124
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C335T C3037T C14408T C16017T A23403G C24718A G25644T T27212C G27561T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544137
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1960T C3037T G8105T C8123T C14408T C16308T A23403G G24812T C24919T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544145
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G15438T A18818G A23403G G25494T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544150
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13618T C14408T C20474T A23403G GGG28881AAC G28904T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544155
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544165
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T C11074T G11083T C11396A C11916T C14178A C14408T T17751G C18998T A23403G A23947G G25563T T25818A C26469G G26828T C29284T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544191
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6730T C9967T C14408T C19374T A23403G G25563T T26205C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544197
 2020-06-12 2020-09-24
 United States hCoV-19/USA/TX-HMH-3442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10188T C14408T A15498C C17550T A23403G T24982C G25563T C25989T C27964T G29781A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553351
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T A28260C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553353
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954D49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14119T C14408T G19648T A20268G T21158C A23403G GAT27382CTC C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553361
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T A23403G GGG28881AAC C29762T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553364
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95522B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T G8371T G11083T C14408T C17746T G19962T C22477T A23403G G25563T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553365
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9550B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553368
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A55A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553370
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954D94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553373
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9555AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553376
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95512E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553377
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T C19317T C19488T A23403G A24519G G27390T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553382
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC C28171T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553384
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A3D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C C21742Y A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553391
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95505E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC G27750T C28171T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553395
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954C2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G C25553T A26117R GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553399
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A50F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G G11083K A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553400
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9557E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7936C T12145G C14408T C15960T A23403G G25244A G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553401
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T C26681T A29385G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553402
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954C3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C14408T A23403G C25896T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553403
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553409
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553412
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95507C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553413
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954D85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C13994Y C14408T A18366G C18788T T19839C T21093C A23403G C25703T C25919T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553415
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A4F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553416
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954FBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C14408T A16638G A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553417
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A4C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600R A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553422
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954DB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600R A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553423
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954D58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18191R A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553424
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A54B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553425
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954EA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T C11824T A12410G C14408T A18366G C18788T G18826A T19839C T21093C C23202T A23403G C25703T C27294T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553426
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A6C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G A12792R C14408T A18366G C18788T T19839C T21093C C22388T A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553430
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553433
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C14408T A16638G A23403G C23709T C26464T A28294T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553436
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9554CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553438
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C534T C854T C3037T G5716T C8047T T10453C C11195T C14408T G14428T A23403G C26858T G28371T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553442
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954F9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G4913T G5716T T10453C C11195T C14408T G14428T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553443
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A3C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G G25660T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553449
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954EBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C G20062T T21093C A23403G C23758A C24621T C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553450
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C14408T A16638G A23403G C23709T C26464T A28294T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553461
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T C26681T A29385G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553464
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9554F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553467
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95571D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1800A G2035T C3037T T10257C C14408T A23403G C23854T G25972A G27842T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553470
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954DFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553477
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954E91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T C11514Y A12410G C14408T C15933Y A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553478
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553479
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9555B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553480
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954D1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C23613T C25703T C27247Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553487
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954AE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1426T C3037T T9518C C14408T G15743A A23403G GGG28881AAC G29332T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553488
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95506D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7397C C8090T G10905A T11932C C14016T C14408T A21323G A23403G C23895T C24904T C25578T T26318C G28373T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553489
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5695G T13827C C14408T G18756T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553493
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9549CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623C C3037T C6026T G10097A C14408T C14605T G17721T C18032T C21614T TTA21991- A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553496
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A52D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553500
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C11962T C14408T G19894A G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553508
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553509
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553517
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9554DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553519
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95530A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G A23403G G24764A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553521
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95504F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC G27750T C28171T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553524
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A44E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600R A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T G26493R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553525
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T G12361T C14408T A23403G C25896T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553537
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954DC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553538
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T G27467T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553543
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95559B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553544
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9550F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8644C T12136C C14408T A17943G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553549
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A4B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553553
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9111A C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553554
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A45D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G C8673Y A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553557
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553562
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954E0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C6472T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553569
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9553CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553575
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600R A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T G26439K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553582
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A43F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553586
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9552B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T C26681T A29385G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553587
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A5A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553591
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95509A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553593
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954CF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553594
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9551E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T A1389G A1788G C3037T C4206T C4795T C14408T G18186T A23403G C25693T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553596
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95508B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553600
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C8597T C14408T A20268G A23403G C28854T A29538T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553603
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954F07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553605
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9551F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553613
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A4D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553614
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9555E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C14396T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553615
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3426Y C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553618
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9553EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553620
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95523A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T C15240T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553621
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95520D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553623
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954BE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T C10202M T10453C C11195T C13115T C14408T G14428T A23403G C25553T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553629
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9554BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553737
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9541D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20429T G20995T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553738
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953EFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T G2164A C3037T T9519G C14408T C22290T A23403G C27294T TTTTGCTTGTCCTGACGGCGTAAAACACGTCTA27585- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553740
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95459C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T G16700T C18086T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553755
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9540C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C337T C3037T C7869T C14408T C18877T A23403G G25563T A25744G C26060T C26735T G28209T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553760
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9543ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C307T C3037T G10097A G11906C C14408T G16269A A23403G C23731T C26198T G28580T C28720T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553776
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T C3037T C14408T C18744T A18978G A23403G G25563T G27217K A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553780
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9540D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T AAGTCATTT686- G2164A C3037T T9519G C14408T C22290T A23403G C27294T TTTTGCTTGTCCTGACGGCGTAAAACACGTCTA27585- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553806
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953F44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G160T C241T C3037T C3743T T9070C G10097A T13216G G13564A C14408T G20014T A23403G C23731T T24887C C25046Y C26542T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553813
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95406E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10263T C12459T C13730T C14408T G18255T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553823
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9541A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2933T C3037T C6651T C14408T G14829T A23403G G27754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553828
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9540F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2756G C3037T C6568T T10513C C14408T A23403G T27851C GGG28881AAC C29541T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553842
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T C21638Y A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553843
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953F35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T G10097A C14408T A19946G A23403G C23731T G24193C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553844
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-9543A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C9438T C14408T A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553858
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95408C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553876
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955AE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553878
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955AC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553885
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-957450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T484C C1059T C3037T A14199T C14408T A23403G G23593T T24529C G25217T G25563T C29119T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553889
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-957502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6726T C14408T C18457T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553891
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955D39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T G5629T C14408T G19889T A23403G C27673T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553900
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955AF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4547G C9665T C12473T C13665T C14408T C18167T C18713T C21952T A23403G A26402G C27046T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553907
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-957353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7360A C14408T T19839C T21854C A23403G A24730T C25350T A25741G C26681T T27285C T27929C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553908
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955DFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553911
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955B99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553912
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955D93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A G10700A C14408T C15240T A19650G A23403G G27841T GGG28881AAC G29179T G29260T G29540T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553915
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955DC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553916
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T G22021T A23403G GGG28881AAC G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553940
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955B20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3464T C14408T G20931A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553947
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9528E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC G29179T G29260T G29540T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553948
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955CE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6016Y C14408T A16474R A23403G G26690K T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553960
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955E45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21306T C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553964
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-955EEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T G21624T A23403G G27877T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553967
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955D0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11124Y C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553973
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955B3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2644T C3037T A9433T G10265A C14408T C18568T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553988
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC C29802Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553989
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-95747E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TC3036CT C6628T G6872A C14408T T14970C A15177G G21850A A23403G G24535T GGG28881AAC G28960A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553995
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955CC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21111C C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554001
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955E09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21306T C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554010
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955AD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4547G C9665T C12473T C13665T C14408T C18167T C21952T A23403G C24133T A26402G C27046T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554018
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955DA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554036
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955B11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554040
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955DB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554044
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955B7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554049
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955D48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554053
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955FD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554059
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955E18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G G25302T C25703T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554066
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955DEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G G25352T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554072
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955D2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C6843T G10097A C13378T C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554074
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955D1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A G10700A C14408T C15240T A19650G A23403G G27841T GGG28881AAC G29179T G29260T G29540T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554075
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952A35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C14408T A23403G C25896T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554077
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955E27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G G25352T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554081
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC G29179T G29260T G29540T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554087
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955D75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554097
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-95761E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3567A C3583T C14408T G21724T T23047C A23403G C26013T G27441T G27598A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554113
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955F06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26606T C28290T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554158
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554168
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-957B5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16376T T17229C T18026C C18877T A21137G C21614T A23403G G24197T G25563T C26681T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554207
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95119B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554229
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950FED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554283
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9515CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C2638T C3037T A7705T C9246T C14408T A23403G A23416T A27938T GGG28881AAC A29430T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554294
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-9570B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4396G C6633T C14408T G17443T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554298
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9510DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554299
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G A23403G C28313T G28378T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554304
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-956864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G A6211G A8659G C14408T C19488T A23403G C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554332
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9558ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1800A G2398A C3037T C14408T A23403G C23854T G25972A G27842T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554334
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953D77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T G13520T C14408T T15978C G18756T T20109C G21099T A23403G G27967T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554339
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9557B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554347
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G C26527T C27416Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554348
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11511T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554357
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953DA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T G13520T C14408T T15978C G18756T T20109C G21099T A23403G G27967T C28411T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554369
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9634T G11083T C14408T A23403G C27263T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554373
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554374
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C4158T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554377
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554387
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-95572C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G T25694C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554394
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953E47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T G13520T C14408T T15978C A23403G C27925T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554411
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953DE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T G13520T C14408T T15978C G22336T A23403G C27925T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554417
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554425
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9558A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554429
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9557A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C19454T T19538C T23255C A23403G A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554431
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953E0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T G2117T C3037T G13520T C14408T T15978C A23403G C27925T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554446
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC G28960T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554453
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554456
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9558FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554466
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2933T C3037T C6651T A7687R C14408T G14829T A23403G G27754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554472
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G922T C2570Y C3037T C6541T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554485
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554486
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953E65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T G13520T C14408T T15978C A23403G G26450K C27925T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554517
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635T C3037T A9634T C14408T A23403G A24321R C27263T C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554520
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953E83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T C3261Y G13520T C14408T T15978C G19800A A23403G C27925T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554522
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9531B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1800A C3037T C5000Y C14408T A23403G C23854T G25972A G27842T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554523
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95581A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554525
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953CA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T G16700T C18086T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554531
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953ABC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1580T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554533
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554542
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7081Y T10513C C11669T C14408T C17678T G19086T A23403G T27851C GGG28881AAC C29541T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554550
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C6927T C14408T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554552
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554553
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9531D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2675T C3037T C6681T C7162T C14408T G15438T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554561
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953C5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2908G C3037T C14408T G21606T A23403G C24374T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554567
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95573B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C12651T C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554579
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953E1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T G13520T C14408T T15978C T20109C A23403G G24095K G27967T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554585
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3895C C12534T C14408T G17590T A19736G A23403G C28310A GGG28881AAC C29284T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554589
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C3037T C6195T C10969T G11083T C14408T T17568C A23403G GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554595
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9554AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7388A C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554604
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5314T T10513C C14408T C16887T A23403G C26882T T27851C GGG28881AAC C29077T A29273R C29537Y C29541T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554612
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9556C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3787T A4926C C14408T G21624T A23403G GGG28881AAC G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554644
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-95805B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5826T A7877G T11798C C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554714
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-9580B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13548T C13730T C14408T A15942G G23120T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554724
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-957D64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T C23230T A23403G -25700CCC C28171T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554745
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-9582BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T T5247C G5629T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554806
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-958097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554867
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AAB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T G15910T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554893
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AC73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11572T C14408T A23403G G25244T G26051R G28857T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554914
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AAC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554931
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95ABC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G11083T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554932
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T G4642A G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554948
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AC64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G11083T C14408T G18859T G21624T A23403G C25350T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555001
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AC82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555027
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18511T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555040
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T A6708G C14408T C14676T G23236R A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555095
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7341G T8857C A10130G C14408T C18252T C21638T A23403G G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555100
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AA6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C307T C3037T G10097A G11906C C14408T G16269A A23403G C23731T C26198T G28580T C28720T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555118
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T G3239T C11235T C12924T C14408T C15738T C20115T G21777A A23403G G28628K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555340
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955A50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555351
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-952CA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C775T C3037T C9438T C14408T G21160A A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555363
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955C3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5250G C14408T C21637T A23403G C25096T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555385
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955A32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T C17746Y A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555390
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955A05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T T4035G C6395T A12410G C14408T C14703T A18366G C18788T T19839C T21093C A23403G C25703T A26927G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555413
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-954936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C775T C3037T C9438T C14408T G21160A A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555414
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955A8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C14408T T17970C A23403G GGG28881AAC G29593T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555421
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955A41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555435
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955A7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T T17826Y A18366G C18788T T19839C G20062T T21093C A23403G C24621T C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555439
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955A23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C2488T C3037T C3817T C14408T C19944A T21124C A23403G T24793G G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555445
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95599F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C G6532T C14408T C20290T G21624T A23403G G25699A A26019G GGG28881AAC C29520T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555447
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955C4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555460
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-952C8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9438T C14408T A23403G C25521Y GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555482
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955C1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555483
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9559EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C823Y C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555489
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955BB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C9803A A10786G C10833T C14408T C18687T T22032C A23403G C25844T T27811C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555492
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9559CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7006Y G7936C T12145G C14408T C15960T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555501
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955A14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555749
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AE40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T C7749T C10755T C14408T G15652T G22093A A23403G TC28252- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556323
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556339
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-949A22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556352
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9498A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4396G C6633T C14408T C15546T G17443T G18677T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556384
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A58A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556394
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9498CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556408
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94A405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T T5492C C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556487
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-949A13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6324G A9433T G10265A C14408T A19650G T22648A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556491
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556492
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-949873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204A C241T G2035A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556503
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-949882/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556504
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9498BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558247
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-57B0FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T A7240G G8353A C8950T G10097A C13536T C14408T A23403G C23731T G25654T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558264
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-57B223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T A7240G G8353A C8950T G10097A C13536T C14408T A23403G C23731T G25654T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558265
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-562605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C875T A1207G C3037T C9491T C14408T C18788T T19839C C21691T A23403G C23625T C26270T T28177G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558287
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-57AA86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558317
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-576404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC T29410C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558326
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-56109F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T G2078A C3037T C14408T C18877T A23403G T24596C G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558361
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-566C5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11514T C13168T C14408T C18877T C22444T A23403G G24764T G25563T C26735T C28854T C29555Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558367
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-578BC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C14408T C19011T A23403G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558375
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-56259F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC T29410C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558383
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-5784E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6604R C14408T C16762Y G19999T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558641
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-5A05A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T C21727T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558816
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A219F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558920
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-51664C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3199C A12949G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558934
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-50C227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6981A C14408T C16111T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558951
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-50FEF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6732C G10097A C10369T C14408T A23403G C23731T T25356C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559088
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-5127F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A12040G C14408T A23403G G25563T C28214A C29724T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559299
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49B3C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G T26715K G26720R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559305
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49B464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C10519T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559309
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49B033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A C14408T A19650G G21538A A23403G G25407T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559321
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49B0F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559323
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49B19A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A C14408T A19650G G21538A A23403G G25407T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559366
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49B200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1862T C3037T C4002T C8772T G10097A A10323G G11083T C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559369
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49B0E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A C14408T A19650G C20320T G21538A A23403G G25407T C25831Y C26645T GGG28881AAC G29511K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559440
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A5661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559460
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4ABC69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559531
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49C16C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T C18676T G22021T A23403G GGG28881AAC G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559536
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A5607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G160T C241T C3037T T9070C G10097A T13216G G13564A C14408T G20014T G20269T -21857AAGGCTGAG A23403G C23731T C24381T T24887C C26542T T27850A GGG28881AAC C29200T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559560
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A52C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21920T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559602
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AB7FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G25352T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559614
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A55CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559625
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A5634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5526A T9630C G11083K C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559659
 2020-06-12 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4ABF24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560562
 2020-06-12 2020-09-29
 United States hCoV-19/USA/AK-PHL477/2020
 ATTAAAGGTTTATACCTT1- C241T T409C C3037T G13714R C14408T G14500T A20288G C21622T C21721T A23403G C26894T C28638A GGG28881AAC AAAAAAA29897-

EPI_ISL_560564
 2020-06-12 2020-09-29
 United States hCoV-19/USA/AK-PHL480/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T G13617T C14408T A23403G G25563T C26164T C27509T C27964T G28899A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

GWHANPA01000001
 2020-06-12 2020-06-21
 China SARS-CoV-2/human/CHN/Beijing_BJ0613-12-HJ/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C6026T C14408T A23403G GGG28881AAC A29694C A29874G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

GWHANPB01000001
 2020-06-12 2020-06-21
 China SARS-CoV-2/human/CHN/Beijing_BJ0613-09-Y/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C6026T C14408T G23282T A23403G GGG28881AAC A29694C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT740434
 2020-06-12 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_174/2020
 G199T C241T A1163T C3037T A8026G C9502T G11083T C14408T A23403G C26895T GGG28881AAC

MT740439
 2020-06-12 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_177/2020
 C241T A1163T C3037T A8026G C11572T C14408T A23403G A26319G C27213T GGG28881AAC

MT740476
 2020-06-12 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_175/2020
 C241T A1163T C3037T C4113T C4321T C14408T A23092G A23403G C27881T GGG28881AAC

MT740477
 2020-06-12 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_176/2020
 C241T A1163T C2910T C3037T C3961T G5950T G13201T C14408T C22858T A23403G C27389T GGG28881AAC G29254T

MT997203
 2020-06-12 2020-09-12
 United States SARS-CoV-2/human/USA/NC-SLPH-0001/2020
 C241T C1059T C3037T C3411T T6394C T7098G G8179A C10319T C14408T A15873G C15924T G18462A A23403G G25563T C27964T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

MT997204
 2020-06-12 2020-09-12
 United States SARS-CoV-2/human/USA/NC-SLPH-0002/2020
 ATTA1- C241T C1059T C2695T C3037T T6905G C7170T T7185A C14408T A23403G T25210C G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT997205
 2020-06-12 2020-09-12
 United States SARS-CoV-2/human/USA/NC-SLPH-0003/2020
 C241T C1059T C3037T C6040T C14408T C16092T G20491T A23403G G25563T AAAAAAAAAAAA29892-

MW001279
 2020-06-12 2020-09-14
 United States SARS-CoV-2/human/USA/269-ETA/2020
 C241T C1059T C3037T C14408T C16260T A23403G G25563T C28821A C29247T T29344C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_471153
 2020-06-13 2020-06-19
 United States hCoV-19/USA/WI-GMF-06127/2020
 C241T C1059T C3037T C14408T C16260T C21575T C22329Y A23403G T25502C G25563T C28821A

EPI_ISL_471154
 2020-06-13 2020-06-19
 United States hCoV-19/USA/WI-GMF-06190/2020
 C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T

EPI_ISL_471155
 2020-06-13 2020-06-19
 United States hCoV-19/USA/WI-GMF-06192/2020
 C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T

EPI_ISL_476562
 2020-06-13 2020-06-25
 Senegal hCoV-19/Senegal/64763/2020
 C241T C1059T C3037T C9891T C14408T G17808T A23403G G25563T C27416A

EPI_ISL_476564
 2020-06-13 2020-06-25
 Senegal hCoV-19/Senegal/64766/2020
 C241T C335T C1625T C3037T C14408T A20268G C22432T A23403G C25549T C25886T C28833T

EPI_ISL_476569
 2020-06-13 2020-06-25
 Senegal hCoV-19/Senegal/64932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T ATG1605- C3037T G6611T G9242A C14408T TTA21991- A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_477762
 2020-06-13 2020-06-30
 United Kingdom hCoV-19/England/BIRM-61331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T11191C C14408T A19946G A23403G C23731T G24193C G26529T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480698 MT745671
 2020-06-13 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2086/2020
 C241T A1163T C3037T T7540C C7728T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_480759 MT745727
 2020-06-13 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2068/2020
 C241T A1163T C3037T T7540C G11083K C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_482874
 2020-06-13 2020-07-06
 Senegal hCoV-19/Senegal/64771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T ATG1605- C3037T C3817T G6611T C12473T C14408T C16134T A23403G G23593C A25408C GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_483518
 2020-06-13 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1091-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1884T C3037T G9389A C14408T A20268G A23403G C28854T C28887T

EPI_ISL_483648
 2020-06-13 2020-07-08
 Switzerland hCoV-19/Switzerland/150000_406_D03_plus/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T A3010M C3037T A3097M A3126M A3129M T3144K T3537Y C3619Y C14408T T17675Y C19524T G22205C A23403G C25731T G26230S GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_483858 MT772215
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC264a/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A2292C C2836T C3037T G4300T A9204G C14408T C18568T C18877T G21724T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483859 MT772237
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC264b/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A16512G G17561A C19154T C22444T A23403G G25563T C26735T C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483860 MT772240
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC265/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T T9199G A10761G A11991G C14408T G19009T G19656T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_483861 MT772252
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC266/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_483862 MT759844
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC267a/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A2292C C2836T C3037T C14408T C18568T G18859T G21724T A23403G G28364C C29750T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_483863 MT760790
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC267b/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T G4300T C14408T A16512G C18877T C19154T C22444T A23403G G25563T C26735T C28854T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_483864 MT772253
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC268a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T C14408T C18568T TTTTGGGTG21981- A23403G G28001T C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483865 MT772256
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC268b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2292C C3037T G4300T G12482A C14408T C15324T T16035C A16512G C18877T C19154T G21724T C22444T A23403G G25563T C26735T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483866 MT758701
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC269/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T C21005T A23403G C27673G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483867 MT759820
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC270/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C313T C3037T C5700A C12242T C14408T G18525T A23403G G25459T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_483868 MT759582
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC271a/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- A2292C C2836T C3037T G4300T C8782T C18568T C18877T G21724T C22444T A23403G G25563T C26735T G28878A G29742A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483869 MT759588
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC271b/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C2836T C7321T C7732T T9643C C14408T A16512G C19154T C21575T G22468T G26842T T28144C C28854T C29696T C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483870 MT759714
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC272a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C2836T C8782T A21137G G22468T C23525T G26730T T28144C G28878A G29742A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483871 MT759742
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC272b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2292C C3037T G4300T A16512G C18568T C18877T C19154T A21137G G21724T C22444T A23403G G25563T C26735T T28144C G28878A C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483872 MT772271
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC273a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G1245A A7824G G8179T C8782T G20489A G22468T A24205T T28144C G28878A G29742A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483873 MT772293
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC273b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A2292C C2836T C3037T A7824G C8782T C18568T G22468T A23403G T28144C G28878A C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483874 MT772294
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC274/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C355T C3037T C14408T A23403G C26022T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483877 MT772297
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC276/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C5869T A10761G G13348T T14136C C14408T G22343A A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483878 MT741096
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC277a/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T G22026T A23403G C27673G G28812T C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483879 MT741490
 2020-06-13 2020-07-08
 India SARS-CoV-2/human/IND/GBRC277b/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A2292C C2836T C3037T G4300T C14408T C18568T C18877T C19154T G21724T G22026T C22444T A23403G G25563T G28812T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_484251
 2020-06-13 2020-07-08
 United Kingdom hCoV-19/England/LCST-24D6F2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G G24872T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484473
 2020-06-13 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C84F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T T4714C G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484506
 2020-06-13 2020-07-08
 United Kingdom hCoV-19/England/SHEF-CFD7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T14466C A15426G G21593A A23403G C27999T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484870 MT750078
 2020-06-13 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T G22051T A23403G C28977T G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490755
 2020-06-13 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165A37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_490759
 2020-06-13 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165A73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A489G C3037T T5465C G6387A C14408T C16293T C17304T G21624T A23403G G24102A AA25800TT GGG28881AAC

EPI_ISL_490818
 2020-06-13 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165F56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C775T C3037T C9438T C14408T A16121C G21160R A23403G T26248C GGG28881AAC G29777T AAAAAAAAAAA29893-

EPI_ISL_490859
 2020-06-13 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-1662B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G419A C829T C1059T G2281A C3037T G3994A C10956T G11670A C14408T C18508T A23403G G25563T G27415A G28371T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_494031
 2020-06-13 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166702/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C775T A1547D C3037T C9438T C14408T G21160R A23403G GGG28881AAC G29777T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495262
 2020-06-13 2020-07-22
 India hCoV-19/India/CCMB_M900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4276T G4354A C6026T C6573T C14408T A23403G C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495263
 2020-06-13 2020-07-22
 India hCoV-19/India/CCMB_M925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4276T G4354A C6026T C6573T C14408T A23403G C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495265
 2020-06-13 2020-07-22
 India hCoV-19/India/CCMB_M931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4276T G4354A C6026T C6573T C14408T A23403G C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495267
 2020-06-13 2020-07-22
 India hCoV-19/India/CCMB_M969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4276T G4354A C6026T C6573T C14408T A23403G C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495268
 2020-06-13 2020-07-22
 India hCoV-19/India/CCMB_M971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4276T G4354A C6026T C6573T C14408T A23403G C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495269
 2020-06-13 2020-07-22
 India hCoV-19/India/CCMB_M980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C6690T T8608C C9870T G11083T C13730T C28311T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495272
 2020-06-13 2020-07-22
 India hCoV-19/India/CCMB_N4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6573T C10029T C14408T C19895T A23403G G24626T C25528T GGG28881AAC C29272T G29553T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_496980 MT831777
 2020-06-13 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2348/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496981 MT831804
 2020-06-13 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2349/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496982 MT831866
 2020-06-13 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2350/2020
 ATTAAAGG1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_496983 MT831762
 2020-06-13 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2351/2020
 ATTAAAGGTTTAT1- C241T C1178T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497014 MT831702
 2020-06-13 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2382/2020
 AT1- C241T C1204T G1747A C3037T C5643T C5730T C14408T C16289T C18570T A23403G G25429T C26527T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497015 MT831860
 2020-06-13 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A2161G C3037T C5758T C14408T C16376T T18453C C18877T A23403G T25224C G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497016 MT831778
 2020-06-13 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2384/2020
 A1- C241T A2161G C3037T C5758T C14408T C16376T T18453C C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_497017 MT831763
 2020-06-13 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2385/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29762T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497018 MT831829
 2020-06-13 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2386/2020
 AT1- C241T C379A C1059T T2244C C3037T A10761G C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497019 MT831883
 2020-06-13 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2387/2020
 AT1- C8782T C17747T A17858G C18060T C21575T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497021 MT831898
 2020-06-13 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2389/2020
 AT1- C241T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497024 MT831652
 2020-06-13 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2392/2020
 AT1- C241T C1387T T1978C C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497025 MT831869
 2020-06-13 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2393/2020
 AT1- G1401A C8782T C17747T A17858G C18060T T28144C T28582C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_497026 MT831766
 2020-06-13 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2394/2020
 AT1- C241T C3037T G7393T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497031
 2020-06-13 2020-07-24
 United States hCoV-19/USA/WA-S2399/2020
 AT1- G1401A G2051A C8782T C16887T C17747T A17858G C18060T A19308G C20031T G23593T A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_498604
 2020-06-13 2020-07-27
 Singapore hCoV-19/Singapore/706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C307T G1736R A1935G C3738T C3743T C14877T C16948T C23940T A28792G G28985T AAAAAAAAAAAA29892-

EPI_ISL_499434
 2020-06-13 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169365/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C AAA29901-

EPI_ISL_499445
 2020-06-13 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2488T C3037T C3551T T5573C C6380T C6883Y C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C AAAAAAAAAA29894-

EPI_ISL_509393
 2020-06-13 2020-08-05
 Singapore hCoV-19/Singapore/783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3261T C6040T C6310A C6312A G11083T C11460T C13730T C15277T C19524T C23520T C23929T C25460T G26828T T27499C C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510867
 2020-06-13 2020-08-07
 Sweden hCoV-19/Sweden/20-52036/2020
 C241T C3037T G8017T C12970T C14408T G15822T A16638G A23403G A25960G C28335T G28703C GGG28881AAC

EPI_ISL_513074
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1038/2020
 C241T C12459T C14408T A17236G C22444T G25563T C28854T

EPI_ISL_513076
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1044/2020
 C241T C3037T C8092T C9693T C14408T G16269A G18466A C18877T T20664C A23403G G25563T C26735T C28887T C29171T

EPI_ISL_513077
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1046/2020
 C241T A2410G C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_513078
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1047/2020
 C241T C3037T C12853T C14408T A15911G C18877T G20991T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513079
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1048/2020
 C241T A2410G C3037T C14408T A23403G G25563T C26735T

EPI_ISL_513080
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1049/2020
 C241T C3037T C12853T C14408T A15911G G19999T C22444T G25563T C26735T C28854T

EPI_ISL_513081
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1051/2020
 C241T C2675T C3037T C14408T G21220T C22444T A23403G G25563T C26735T T27360C C28854T

EPI_ISL_513082
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1052/2020
 C241T C1267T C2455T C3037T C11249T A11908G C14408T C18877T G19419A G25563T C26735T T28888C

EPI_ISL_513083
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1053/2020
 C241T C3037T C12459T C14408T A17236G C22444T G25563T C26735T C28854T

EPI_ISL_513085
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1060/2020
 C241T C3037T C11747T C14408T G20102T C22444T A23403G G25563T C26735T C28854T G29620C

EPI_ISL_513086
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1061/2020
 C241T C3037T C14408T C18877T C23634T G25563T C26735T

EPI_ISL_513087
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1066/2020
 C241T C829T C3037T C14408T A23403G G25563T C26735T

EPI_ISL_513099
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1086/2020
 C241T C3037T C12459T C14408T A17236G C18877T C22444T A23403G C26735T C28854T

EPI_ISL_513103
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1094/2020
 C241T G1772T C3037T C3429T C14408T C18877T C19269T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_513104
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1095/2020
 C241T G1772T C3037T C14408T C18877T C19269T C22444T G25563T C26735T C28854T

EPI_ISL_513105
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1096/2020
 C241T C3037T T5434C C9924T C10582T C14408T C18877T C22444T G25563T C26735T C28854T

EPI_ISL_513106
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1099/2020
 C241T C3037T G8867A C10789T C14408T A17236G C22444T G25563T C26735T C28854T C29218T G29742A

EPI_ISL_513107
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1100/2020
 C241T C3037T C10252T C14408T C19269T C20647T A21651T C22444T G24998T G25563T C26735T C28854T

EPI_ISL_513108
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1102/2020
 C241T C3037T G3560T T7292C C8917T C9940T C14408T C21575T C21622T C21789T G25563T C26735T

EPI_ISL_513109
 2020-06-13 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1103/2020
 C241T C3037T C14408T T15537C A23403G G23593T

EPI_ISL_514895
 2020-06-13 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2492/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C27999T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_516423
 2020-06-13 2020-08-20
 North Macedonia hCoV-19/North Macedonia/3310/2020
 AT1- C241T C313T C3037T G4148T G11083T C14408T G16935T G20477T A23403G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_517790 MT966144
 2020-06-13 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0900/2020
 C241T C3037T C12412T T14313C C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_517791 MT966145
 2020-06-13 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0901/2020
 T13C C241T C1059T C3037T C14408T G18186T G20102T G20397T G20489T C22564T A23403G T23815G G25563T C25777T C29614T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_521909 MT969385
 2020-06-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_523336
 2020-06-13 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9866T C12076T C12357T C14408T C16887T C17135T G17632T C18877T C19512T G20718T C21637T C22444T A23403G G25563T C26735T C28854T C29719G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523452
 2020-06-13 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C1594T C3037T T8166C C11109T C14408T C15981T A23403G G25563T G27987T C29614T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523453
 2020-06-13 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G C18348T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523454
 2020-06-13 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T A6659G G12191T C13261T C14408T T16479C A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525845
 2020-06-13 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0612/2020
 A1- C241T C3037T C8818T C14408T C15952T G20980A A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_525846
 2020-06-13 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0614/2020
 ATTAAAGGTTTATAC1- C241T C3037T C8818T C14408T C15952T G20980A A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_525847
 2020-06-13 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C3037T A5311G C6762T G8881T C10507T C14408T A23403G T25729C G29543C AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_525848
 2020-06-13 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0616/2020
 ATTA1- C241T C1059T C3037T C4577T C11916T C14408T A23403G C25466T G25563T G28027T G29742T GATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29751-

EPI_ISL_525849
 2020-06-13 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5941C C8818T C14408T C15952T G20980A T22297C A23403G

EPI_ISL_525851
 2020-06-13 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8818T C14408T C15952T G20980A C21727T A23403G

EPI_ISL_525854
 2020-06-13 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0624/2020
 ATTAAAGGTT1- C241T A808T C3037T C8818T C14408T C15952T G20980A A23403G GTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29757-

EPI_ISL_525856
 2020-06-13 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A808T C3037T C8818T C14408T C15952T G20980A A23403G A29305G

EPI_ISL_525857
 2020-06-13 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10755T C11916T C14408T C14599T A23403G C25466T G25563T G28027T G29742T

EPI_ISL_525858
 2020-06-13 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C584T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_525860
 2020-06-13 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2775G C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_525862
 2020-06-13 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2775G C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_527012
 2020-06-13 2020-09-03
 Australia hCoV-19/Australia/NSW2411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6591G C14408T C20132T A23403G T27299C C27942A GGG28881AAC T29148C C29724Y T29727A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527735
 2020-06-13 2020-09-04
 United States hCoV-19/USA/MN-CDC-6593/2020
 C241T C1059T C1259Y C3037T A7770G C14408T C16848Y C22993T A23403R C24320Y G25563T C27524Y C28253T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527904
 2020-06-13 2020-09-05
 Nigeria hCoV-19/Nigeria/OY612-CV173/2020
 ATTAAAGGTT1- C37T C241T C3037T C10296T C14408T C18189T A20374G A23403G T25541C C26942T GGG28881AAC

EPI_ISL_527911
 2020-06-13 2020-09-05
 Nigeria hCoV-19/Nigeria/OY627-CV184/2020
 ATTAAA1- C241T C3037T C14408T A14607G A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527912
 2020-06-13 2020-09-05
 Nigeria hCoV-19/Nigeria/OY628-CV185/2020
 C241T C3037T G4146A T10093G C14408T T14970C A23403G G25352T C27752T G27762C C28695T C28744T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_528700
 2020-06-13 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/434/2020
 C241T C3037T C6781T T7171C C14408T G16914T A23403G C27002T GGG28881AAC

EPI_ISL_529007
 2020-06-13 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE79445/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- ACC31GAG A35T C37S C241T C3037T T3613Y A6866W A6869W C14408T A21851R A22005M G22927T C22986T A23403G C28253T GGG28881AAC C29119Y AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_537258
 2020-06-13 2020-09-16
 United Kingdom hCoV-19/England/SHEF-10B3151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8991T C11289T C14408T T15051C A20255G A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538506
 2020-06-13 2020-09-17
 Indonesia hCoV-19/Indonesia/PA-NIHRD-C0710717/2020
 C745T A4860G C11671T G26211T G28899T G29254A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_538507
 2020-06-13 2020-09-17
 Indonesia hCoV-19/Indonesia/PA-NIHRD-C0710684/2020
 A4860G A24118G G26211T G29254A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_543189
 2020-06-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-3784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543241
 2020-06-13 2020-09-23
 United States hCoV-19/USA/TX-HMH-3838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1734T C3037T C14408T A23403G C23664T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544057
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544059
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544060
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C244T C1059T C3037T C3602T A13901G C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544062
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T C29025T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544064
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4927T C13168T C14408T C16163T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544065
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544066
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4321T C6384T C10449T C14408T C20474T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544068
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1141T C3037T C9996T C11020T C14408T C16260T A23403G G25563T A26162G C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544069
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G G28456T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544075
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544079
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4162T C9163A C9430T C10188T C14408T C16694T A23403G T24982C G25563T G27390C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544081
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544084
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T G19861T A23403G G25459A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544089
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A20753G A23403G G25494T G25563T G26828T A29083G G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544090
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A20753G A23403G G25494T G25563T G26828T A29083G G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544092
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12781T C14408T C23191T A23403G G25563T T27104C G28242T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544094
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544095
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T C11396A C11916T C14178A C14408T C18998T A20753G A23403G G25494T G25563T G26828T A29083G G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544096
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3169C T5071C G11083T G12167A C14408T T20529C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544129
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544133
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A681G C1059T C3037T G3582A C4540T G9463T C9711T C14408T G19962T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544134
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T C4931A G9479T C14408T C17119A C18508T T22369C C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544140
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1059T C3037T C14408T C16260T A23403G G25563T G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544142
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22747T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544144
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13618T C14408T C20474T A23403G GGG28881AAC G28904T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544146
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T C4931A G9479T C14408T C17119A C18508T T22369C C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544148
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T T20037C A23403G G25563T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544151
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2618G C3037T C11747T C14408T C15540T C20474T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544153
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544156
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1820A C3037T C14408T G15452T G17151T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544179
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13576T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544184
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544185
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G198T C241T C1059T C3037T C14408T G15406T A23403G G25555A G25563T C26735T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544186
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544188
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544192
 2020-06-13 2020-09-24
 United States hCoV-19/USA/TX-HMH-3436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28378T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553352
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954B30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G A23403G G24764A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553366
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A4A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553369
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12973T C14408T T20401C A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553374
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954A15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8540R T8644C C14408T A17943G A23403G GGG28881AAC C29679M CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553405
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954B21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G C22530T A23403G G24764A C28854T C29171T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553406
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9549FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8644C C14408T A17943G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553411
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954B9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C A23403G C25638T G25687T C25919T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553428
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954E46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T C16084T T19893C A23403G C26625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553437
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A8BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6825G G11083T C14408T C17118T T20526C A23403G GGG28881AAC C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553439
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A8CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623C T2800C C3037T C4577T T7009A C9491T C9924T C14408T C19875T A23403G C27046T C27143T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553462
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954B4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G A23403G G24764A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553472
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553492
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-959F20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T A20055G A23403G C23731T G25947T T28723C GGG28881AAC G29315C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553501
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954C6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T G27857T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553503
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954BA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9630C C14408T C20589T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553528
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9551A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553585
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553590
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954E37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3787T A4926C C14408T G21624T A23403G GGG28881AAC G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553595
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954E55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884Y C3037T C3787T A4926C C14408T G21624T A23403G GGG28881AAC G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553598
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95562F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T20401C A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553607
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954A06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9744G C14408T C19011T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553624
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T20401C A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553733
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9543FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7042T T12247C C14408T A23403G C27752T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553735
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5974T C6706T C14408T G20931A C21928T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553736
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553745
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G G11083K C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553764
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553765
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553767
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9542D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553781
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95412F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21147A C21637T A23403G G27967T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553783
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19402T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553788
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553793
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553798
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95422C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19893C A23403G C24370T C25515T C25728T GGG28881AAC A29368T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553799
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953E56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T C17746Y A20268G C21306T C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553801
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1946T C3037T A3569G A6211G A8659G C14408T T18438C C19488T A23403G C26681T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553802
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954A60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6428T C6681T C7162T C10626T C14408T G15438T C19164T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553804
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95424A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C C18695Y C21772Y A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553805
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66Y C241T C3037T C3738T G10097A C10868T -11075TTT C11750T C13426T C14408T C18131T G19180A A22107G A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553814
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953ECF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14120T C14408T G18859T G21624T A23403G C25046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553816
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95382B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C11919T C14408T A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553830
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553834
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95430B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553836
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953F17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553837
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95381C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553857
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95417A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8991T C11289T C14408T T15051C A20255G C21575T A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553863
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9542FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G376T C3037T C14408T G18020A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553883
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9529CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T C18508T G22319T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553888
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952AAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T G19101K A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553904
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952B14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2044A C3037T C14408T A23403G GGG28881AAC G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553922
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952ABD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8644C C14408T A17943G A23403G T27436Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553923
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952ACC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G T28494C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553984
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9529ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554025
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-9573CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16376T T17229C T18026C C18877T A21137G C21614T A23403G G24197T G25563T C26681T C26735T C26873T A27980G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554051
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952A71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2675T C3037T T7759Y C14408T C19102T G22427A A23403G G27754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554076
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952A53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T C3037T C14408T C18744T A18978G A23403G G25273T G25563T C29249T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554084
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9529DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T C15654T G17280K C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554092
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952A62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C3037T C6990T G9584T C10702T C14408T T16993C A23403G C25836T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554108
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9528B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3961T C14183T C14408T G15894T T19893C A23403G G25523T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554109
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952ADB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554121
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-957292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T T5247C G5629T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554122
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95177B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1415T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554129
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3915C C13620T C14408T G17019T A23403G C27625T G28242T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554136
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4690C C8991T C11289T C14408T T15051C A20255G A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554143
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-957283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G25996T G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554156
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9512E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T T5507A C11074T G11083T C14408T A20268G G21010A C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554164
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-951359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6582T G7526A G8083T C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554171
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950EFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C337T C3037T C7869T C14408T C18877T A23403G G25563T A25744G C26060T C26735T G28209T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554172
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9512B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554175
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95133B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554190
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554194
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950FCF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G11083T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554197
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950F83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554198
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95118C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C6681T C7162T C9165T C14408T G15438T A20268G A23403G C24026T C25904T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554199
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9513C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T G25563A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554202
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575Y C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554215
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5826Y T6842K G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554219
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9514A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C13115T C14408T G14428T A23403G C25553T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554227
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554233
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9510BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C8958Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554235
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554238
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9512C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C12781T C14322T C14408T G15438T A20268G C21342T A23403G C24026T C28139A G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554252
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C13115T C14408T G14428T A23403G C25553T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554257
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9512D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554263
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95117D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4396G C6633T C14408T C15546T G17443T G18677T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554266
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9513E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T C15080T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554270
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95108F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554275
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C13115T C14408T G14428T A23403G C25553T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554278
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950FB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T G3606T C4158T C8318A G11083T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554279
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95116E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554280
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554282
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95109E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11665T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554288
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554301
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-951377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554302
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-957186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATG518- G1914A C3037T A6625C C8078T C14408T T16456C A23403G G25593T G26718T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554305
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G A23403G C28253Y C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554309
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C13115T C14408T G14428T A23403G C25553T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554324
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953C89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T A5836G C6401T C14408T G16700T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554372
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9556A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554384
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9514FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554389
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G599A T2153A C3037T C14408T A23403G G26589C A27083G C27128T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554397
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9508E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554406
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95127A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T C22432T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554414
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4149C CAG6501- A8031G C12525T C14408T G22661T A23403G G25599T GGG28881AAC C29353T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554418
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95141A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G11083T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554422
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9508A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C539T C3037T C3140T C14408T G20931A G23120T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554423
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9514ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G T25178Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554426
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554430
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953CE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T931G C3037T C8950T C14408T C18877T A23403G C23929T G25563T C26735T C27972T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554450
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953C98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5822T G10097A T13216G C14408T C14793T A23403G C23731T C26801T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554454
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953FDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554477
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554480
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9514DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T A8072G C8318A C14408T G18859T A21137R G21624T A23403G GGG28881AAC C29708Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554482
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953F80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554509
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T A2908G C3037T C14408T G21606T A23403G C24374T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554512
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950DD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3020Y C3037T G9479T G10097A T12236Y C14408T A19946G C21575T C22993T A23403G C23731T G24193C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554539
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554540
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95159F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4824T G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554557
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554573
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554576
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9514CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554586
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9513FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1683C C3037T C6681T C7162T T10339C C10626T C14408T G15438T A15779G C19164T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554597
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554603
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95078B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554605
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9540B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14408T G15438T A20268G A23403G C24026T C24130Y C25904T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554606
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953FBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T C16049T A23403G A25271G G25429T A25564C C27881T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554610
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9540AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554633
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-958862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T G6083T C6500A A13953G C14408T C20759T C21242T A23403G G26450T GGG28881AAC C28890T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554658
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-958219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8131T C8626T A9433T G10265A C14408T A19650G A23403G GGG28881AAC G29742K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554683
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-957C76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7397C C8090T G10905A T11932C C14016T C14408T A21323G A23403G C23895T C24904T C25578T T26318C G28373T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554713
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-957CA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7397C C8090T T11932C C14408T A21323G A23403G C23895T C24904T C25578T T26318C GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554715
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-95820A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882A C1884T C3037T A9433T G10265A C14408T T15927C A19650G G21538A A23403G C26645T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554747
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-957E61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T G11596T C14408T G15380T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554801
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-9583CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T T17353C A23403G C25844T C28087T GGG28881AAC C29160T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554838
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-95802E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1942T C3037T C3044T C7119Y G10097A C10332T G11417T C14408T A17205G A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554861
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-959E41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1314T C2676T C3037T C4582T G8540A C14408T A19782T A23403G GGG28881AAC G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554894
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A97C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554967
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A9B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T A11356T C14408T C22425T A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554968
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-959EBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1800A G2035T C3037T T10257C C14408T A23403G C23854T G25972A G27842T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554982
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A9A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2144T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555042
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A7BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18267T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555043
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-959D35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555052
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A9C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C13708A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555089
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-959D53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G G27364T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555121
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T C21575Y G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555320
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952CB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C3817T C14408T T21124C A23403G G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555349
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555350
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952BBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555352
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952C02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555356
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95466C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C9603T C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555365
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95449F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555407
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555429
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A C14408T A19650G G21538A A23403G G25407T C26645T GGG28881AAC C29743T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555442
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G19894A C21575Y G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555523
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AB49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21147A C21637T A23403G G27967T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555560
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-95AF10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C775T C3037T C9438T C14408T G21160A A23403G C25546T GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555673
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AE9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1941C C3037T C14408T G18674A A23403G A23779T GGG28881AAC G28968T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555694
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AF4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555695
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95B076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555702
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AC19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555732
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AF2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T G11083T C14408T C22477T A23403G G24959T G25563T C29253T C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555741
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AC28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555761
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AEAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A15647C A19182G A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555787
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B12B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9070C G10097A C10833T T13216G G13564A C14408T G17462R T18488C G20014T A23403G C23731T T24887C T27203C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555788
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B96F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555790
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C11644T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555814
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8986Y C9943T C14408T G19921S A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555824
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B13A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2583T C3037T C9430T G10097A G12243A C14408T C17012T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555827
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556476
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D0C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T G25720T C26681T A29385G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558241
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-597072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C875T A1207G C3037T ACA6524- C9491T C14408T C18788T T19839C C21691T A23403G C23625T C26270T T28177G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558244
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59BB9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558270
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59BC2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T C3096T C14408T G21624T A23403G GGG28881AAC G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558277
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59A279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20940T A23403G GGG28881AAC A29380R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558288
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59BC01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3903T C14408T G18020A A23403G C23664T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558289
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59CA7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558390
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-58F374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T C3037T C4002T C9195T G9479T G10097A C13536T C14408T A23403G C23731T T24063C G25409T A25948G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558396
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59C4DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T G11083T C14408T C22477T A23403G G24959T G25563T C29253T C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558650
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A6A63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558660
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A41D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558662
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59EB4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C4002T G10097A C13536T C14408T G19816T A23403G C23731T GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558668
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A7868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T A20055G A23403G C23731T G25947T T28723C GGG28881AAC G29315C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558678
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A67E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558692
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59CAD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C9803A A10786G C10833T C14408T C16017T C18687T A23403G C25844T T27811C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558698
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A8E38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T G10097A C14408T A19946G C21575T C22993T A23403G C23731T G24193C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558699
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59F06B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558734
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A626B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558786
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-5A8E92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A489G C3037T T5465C G6387A C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558805
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A48C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558838
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59DB02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558859
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A4142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G G28346T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558884
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A4528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4779C T8631C C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558973
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-5169F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T A23403G G25563T C26735T C27689T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559063
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-516D56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A T10771C C12085T G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559380
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49A41A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25217T C25350T T25899C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559383
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49A605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559386
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49A456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559395
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49A474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A12174G C13499T C13730T T14361C C14408T A23403G G25429T T26715K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559415
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49A3FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T G6734A C14408T A23403G T26715K GGG28881AAC A29350T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559416
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49A650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T A20458W G22199T A23403G C23731T T26715K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559419
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49A6AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A C14408T A19650G C20099T G21538A A23403G C26645T T26715K G26720R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559420
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49A465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559425
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49A5AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2983T C3037T C7834T G10565A C14408T C16997T C17336T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559428
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49A447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559453
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AA74B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9291R C10748Y C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559463
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A723E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19402T TTG20408ACA C21637T A23403G T26715K G26720R A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559466
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A726B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T A2641G C3037T C3177T C3622T G4510T C14408T G19481T A23403G G25654T C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559500
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A8E57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6324G C9430Y A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559503
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A6EFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T C4582T G9974T G10097A T10117G G11310T G11521T C13536T C14408T C21622T A23403G C23731T A26115G GGG28881AAC GTACGATCGAGT29747- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559546
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A7456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T T21937C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559572
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AA81B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559581
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AA981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C16338T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559646
 2020-06-13 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4A717D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G A28691C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560975
 2020-06-13 2020-09-30
 Sweden hCoV-19/Sweden/20-52037/2020
 C241T A1517G C3037T T7897C C9319T C14408T C15240T C22858T A23403G C24865T G25062T C27110T C27697T GGG28881AAC

MT811523
 2020-06-13 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1091-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1884T C3037T G9389A C14408T A20268G A23403G C28854T C28887T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT967910
 2020-06-13 2020-09-04
 United States SARS-CoV-2/human/USA/MN-CDC-6593/2020
 C241T C1059T C1259Y C3037T A7770G C14408T C16848Y C22993T A23403R C24320Y G25563T C27524Y C28253T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_471156
 2020-06-14 2020-06-19
 United States hCoV-19/USA/WI-GMF-06288/2020
 C241T C292T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T

EPI_ISL_472415
 2020-06-14 2020-06-23
 United Kingdom hCoV-19/England/NOTT-111E5C/2020
 C241T A2641G C3037T C3177T C3622T G4510T C14408T G19481T A23403G G25654T C25844T C28087T GGG28881AAC

EPI_ISL_476572
 2020-06-14 2020-06-25
 Senegal hCoV-19/Senegal/65030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1625T C3037T C14408T A20268G A23403G C25578T C25886T C28833T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_477134
 2020-06-14 2020-06-28
 Bangladesh hCoV-19/Bangladesh/CHRF_0024/2020
 ATTAAAGGTTTATACC1- C241T C2836Y C3037T C14408T C18877T C22444T A23403G G23909T G25563T C26735T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477135
 2020-06-14 2020-06-28
 Bangladesh hCoV-19/Bangladesh/CHRF_0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T G13920K C14408T C14599Y A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_480702 MT745674
 2020-06-14 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2090/2020
 C241T C3037T C14408T A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_480758 MT745726
 2020-06-14 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2069/2020
 C241T A1163T C3037T T7540C C14408T C16247T G16647T C18555T C20178T G22992A G23401A A23403G C28138Y GGG28881AAC

EPI_ISL_480761 MT745729
 2020-06-14 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2158/2020
 C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_482726
 2020-06-14 2020-07-05
 South Africa hCoV-19/SouthAfrica/KRISP-0245/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C6762T T12503C C14408T A23403G G25770T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_483530
 2020-06-14 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1106-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G11083T C13665T C14408T C16468T C17444T A23403G G26049T GGG28881AAC

EPI_ISL_483645
 2020-06-14 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_211/2020
 C241T A1163T C3037T C9050T A9828G C14408T T16939C C20628T A23403G GGG28881AAC

EPI_ISL_483646
 2020-06-14 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_212/2020
 C241T A1163T C2113T C3037T C6120T A8026G C9502T G11083T C12085T C14408T C15960T A23403G C26895T C28435T GGG28881AAC

EPI_ISL_483647
 2020-06-14 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_213/2020
 C241T A1163T C3037T GATTCCTAAAGAGGAAGTTAAGCCATT3880- C11514T C14408T C15180T G18994T T20424C A23403G G28080A GGG28881AAC G29734T

EPI_ISL_483691
 2020-06-14 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_210/2020
 C241T C2453T C3037T T10371G C14119T C14408T A23403G G26199T G28321T GGG28881AAC

EPI_ISL_483823 MT772210
 2020-06-14 2020-07-08
 India SARS-CoV-2/human/IND/GBRC242/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G252T C3037T T6826C G10688T C14408T G16078A C18877T C22444T G23311T A23403G G25563T C26735T C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_483824 MT740441
 2020-06-14 2020-07-08
 India SARS-CoV-2/human/IND/GBRC243/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G6083T C14408T C18877T C21811T A23403G T25123G G25563T C26735T G28851T C29836T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483825 MT740444
 2020-06-14 2020-07-08
 India SARS-CoV-2/human/IND/GBRC244/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1190G G2518T C2836T C3037T G4255T C14408T C18877T C22444T G23311T A23403G G25563T C26735T G28739T C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_483826 MT758203
 2020-06-14 2020-07-08
 India SARS-CoV-2/human/IND/GBRC245/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12616T C14408T C18877T G21795T A23403G C25517G G25563T C26735T G27240T C28744T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_484478
 2020-06-14 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C913D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484677
 2020-06-14 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR3895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A363G C2146T C3037T C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484812 MT750025
 2020-06-14 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C14408T T15354C C18646T C18877T A23403G G25456T G25563T C28737T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484817 MT750029
 2020-06-14 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7851T G10610T C14408T T17556G C19164T G19542T A23403G G25563T G25699T C26753T G28027T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484889 MT750095
 2020-06-14 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9520T C12525T C14408T C16260T G21604T A23403G G25563T C25728T G28378T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485609
 2020-06-14 2020-07-09
 United Kingdom hCoV-19/England/202561788/2020
 ATTA1- C241T C3037T C9979T A10323G C14408T A20268G G21778A A23403G G28985K G29195T C29272T AAAAAAAAA29895-

EPI_ISL_485713
 2020-06-14 2020-07-09
 Senegal hCoV-19/Senegal/65601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1625T C3037T C14408T G19406A A20268G A23403G C25886T C28833T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_490722
 2020-06-14 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-16577C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C775T C3037T C9438T C14408T G21160R A23403G GGG28881AAC G29777T AAA29901-

EPI_ISL_490747
 2020-06-14 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A489G C3037T T5465C G6387A C12623T C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_490773
 2020-06-14 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165B8F/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_490781
 2020-06-14 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165C04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3049C C14408T G21624T A23403G G27877T GGG28881AAC TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_490782
 2020-06-14 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165C13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T T3049C C14408T G21624T T22618G A23403G G27877T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_490829
 2020-06-14 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-166061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_490835
 2020-06-14 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-1660DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2488T C3037T C3551T T5573C C6380T C6883Y C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C AAAAAA29898-

EPI_ISL_490840
 2020-06-14 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-166140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C AA29902-

EPI_ISL_490857
 2020-06-14 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-166298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2488T C3037T C3551T T5573C C6380T C7420T C7564T G11801A C14408T T19839C A23403G G24586T C25275T G25552T G26172T GGG28881AAC T29607C

EPI_ISL_491714
 2020-06-14 2020-07-17
 United Kingdom hCoV-19/England/202881379/2020
 C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC

EPI_ISL_494003
 2020-06-14 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1664A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G G27877T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494004
 2020-06-14 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1664B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A489G C3037T T5465C G6387A G11693A C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494093
 2020-06-14 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166BF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C9438T C14408T A23403G GGG28881AAC G29777T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_497020
 2020-06-14 2020-07-24
 United States hCoV-19/USA/WA-S2388/2020
 AT1- C241T C3037T C14408T C15933T G16968T C19688T T19839C A23403G G27676T G28851T GGG28881AAC G29764T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497022 MT831808
 2020-06-14 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2390/2020
 AT1- C241T C3037T C6445T A6604G C14216T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497027 MT831876
 2020-06-14 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2395/2020
 ATTAAAGGTT1- C241T C3037T C13994T C14408T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497028 MT831886
 2020-06-14 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2396/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C A23403G C28256T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497032 MT831833
 2020-06-14 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2400/2020
 AT1- C8782T G11083T C17747T A17858G C18060T G19872T G21724T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_497033 MT831632
 2020-06-14 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2401/2020
 ATTAAAGGTTTA1- C241T C3037T T3556C T6226C C6636T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497039 MT831640
 2020-06-14 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2407/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C14768T C15933T G16968T T19839C C22591T T22825C A23403G G25249T G28193T GGG28881AAC C29784T C29835T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497061 MT831637
 2020-06-14 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2429/2020
 AT1- C241T C3037T G7393T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497062 MT831736
 2020-06-14 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2430/2020
 ATT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497063 MT831679
 2020-06-14 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2431/2020
 AT1- C241T C3037T C13536T C14408T C15933T G16968T C17304T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497064 MT831576
 2020-06-14 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2432/2020
 AT1- C241T C3037T A12199G C14408T C15933T G16968T T19839C A23403G T23986C T28187C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497065 MT831569
 2020-06-14 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2433/2020
 AT1- C241T C3037T G3452A C3992T G4510T C8311T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497066 MT831657
 2020-06-14 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2434/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C3992T G4510T C14408T C15933T T19839C A23403G T25451C G25489T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497093 MT831899
 2020-06-14 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2461/2020
 AT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497095 MT831611
 2020-06-14 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2463/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_499387
 2020-06-14 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16906E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G419A C829T C1059T C3037T G3994A C9603T G11670A C14408T C17733Y C18508T C18788T A23403G G25563T G27415A G28371T

EPI_ISL_508496
 2020-06-14 2020-08-04
 India hCoV-19/India/TF2/2020
 C241T T1947C C3037T G7042T T10362G G11272T C14408T C17002T T18593C C18877T C22444T A23403G G25563T C26735T C28854T C29666T G29868A

EPI_ISL_508502
 2020-06-14 2020-08-04
 India hCoV-19/India/TF3/2020
 AT1- G204T C241T C313T C3037T C5700A C14408T A23403G C25614T GGG28881AAC G29868A

EPI_ISL_508505
 2020-06-14 2020-08-04
 India hCoV-19/India/TF4/2020
 AT1- C241T T1947C C3037T C14408T C18877T C22444T A23403G G25563T C26735T T27384C C28854T G29868A

EPI_ISL_508507
 2020-06-14 2020-08-04
 India hCoV-19/India/TF6/2020
 T3C C241T T1947C C3037T C14408T C16750T T18224C C18877T C22444T A23403G G25437T G25563T C26735T T27384C C28854T G29868A

EPI_ISL_511960
 2020-06-14 2020-08-10
 United Kingdom hCoV-19/England/BRIS-132DEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T G4300T C4780T C6638T T7792C C14408T C20759T G21724T A23403G C23758T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_511978
 2020-06-14 2020-08-10
 United Kingdom hCoV-19/England/BRIS-132E19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4300T C4780T C6638T T7792C C14408T C20759T G21724T A23403G C23758T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518014
 2020-06-14 2020-08-25
 Singapore hCoV-19/Singapore/849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G9500A G11083T C13730T G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_521953 MT972150
 2020-06-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_521954 MT972151
 2020-06-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2214/2020
 ATTAAAGGTT1- C241T A1163T C3037T C5806T C14408T G17601A C21855T A23403G C27884A GGG28881AAC G28939T

EPI_ISL_521956 MT972152
 2020-06-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C18877T C22986T A23403G G25563T C26735T C29743T

EPI_ISL_521957 MT972153
 2020-06-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2217/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_521961 MT972158
 2020-06-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2224/2020
 ATTAAAGGTT1- C241T A1163T C3037T C5497T T7540C C14408T C16247T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521962
 2020-06-14 2020-08-25
 Australia hCoV-19/Australia/VIC2225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTT1- C140- C241T G285T T287C C1059T C1758T C3037T C5183T C12534T C14408T T20602C A22320G ATGTGGGTTATCTTCAACCTAGGACTTTTCTATTAAAATATAATGAAAATGGAACC22359- A23403G G25563T G26172T

EPI_ISL_523011
 2020-06-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-13-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T G1757C G3251T A3642G G12795A G14274A C14408T A23403G A24862G C25936T C26013T GGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29527-

EPI_ISL_523012
 2020-06-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-13-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T AAT6506- G14274A C14408T A17008G T18509A A23403G A24862G C25936T C26013T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523013
 2020-06-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-13-16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T G3251T C6027T G14274A C14408T A23403G A24862G C25936T C26013T TAT26483- GGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29527-

EPI_ISL_523014
 2020-06-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-13-4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T G1599T C3037T G3251T G14274A C14408T A23403G A24862G C25936T TC26012CT GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523015
 2020-06-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-13-9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T G14274A C14408T A23403G A24862G C25936T C26013T C26078T G27857T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523017
 2020-06-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-14-21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A113G C241T C1457T C1594T C3037T G8572T C10369T C11109T G12794A C14408T C15848T A23403G G25563T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523018
 2020-06-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-14-25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A G13836A C14408T C15848T A23403G G25563T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523019
 2020-06-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-14-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C14408T C15848T G16741T A23403G G25563T T26047G C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523020
 2020-06-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-14-37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C14408T C15848T C20132T A23403G G25563T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523021
 2020-06-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-14-41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A548G C1457T C1594T C1609T C3037T C10369T C10560T C11109T G12794A C14408T C15848T A23403G G25563T C28854T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523364
 2020-06-14 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C203T C241T C449T C3037T C14408T A23403G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_535317 MT997961
 2020-06-14 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1276/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C C28531T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535324 MT997968
 2020-06-14 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1283/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535327 MT997971
 2020-06-14 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1286/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C C29679T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535330 MT997974
 2020-06-14 2020-09-14
 United States SARS-CoV-2/human/USA/LA-CDC-1289/2020
 C241T G376T C1059T C1758T G2447T C3037T C10319T C14408T A23403G G25563T C27964T T28282C AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_541768
 2020-06-14 2020-09-23
 United Kingdom hCoV-19/England/LOND-1286DD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G386A C1059T C2065T C3037T C9430T C14408T A23403G G24368T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543009
 2020-06-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-3546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543015
 2020-06-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-3553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C14408T A18751G A23403G G25266T G25563T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543017
 2020-06-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-3555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2228C C3037T C14408T C16163T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543194
 2020-06-14 2020-09-23
 United States hCoV-19/USA/TX-HMH-3789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1150T C3037T C10319T C14408T C17977T A23403G G24812T G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544138
 2020-06-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-3353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T T21942C A23403G G25563T C27297T C28821A C28957T G29405C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544147
 2020-06-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-3362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10015T C14408T G14829T G18873A C23191T A23403G G25563T G26769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544154
 2020-06-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-3370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544158
 2020-06-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-3374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T G7798T T11134C C14408T G18412T A18535G C19011T T23245G A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544161
 2020-06-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-3401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6896T C10319T C14408T C16308T C16694T A23403G G25563T A25986T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544162
 2020-06-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-3402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C18131T G19872T T20286C A23403G G25563T G25687T C27964T A29147G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544167
 2020-06-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-3407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13576T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544172
 2020-06-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-3412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1836T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544176
 2020-06-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-3417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4908A C10116T C14408T A23403G T24139C G25563T G27047T G27261T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544182
 2020-06-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-3424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1419T G2282A C3037T T9742C C14408T C17639T A23403G C25685T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544194
 2020-06-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-3438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C14408T C17119A C18508T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544215
 2020-06-14 2020-09-24
 United States hCoV-19/USA/TX-HMH-3515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CG241TA C1059T C3037T C5869T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A23403G A23947G G25563T C26469G G26828T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548252
 2020-06-14 2020-09-25
 Sweden hCoV-19/Sweden/20-52034/2020
 C241T AAGTCATTT686- C1059T G2527T C3037T C14408T C19011T A23403G G24368T G25563T A25823G

EPI_ISL_553408
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95556E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T G10565A A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553476
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A3E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553502
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954DEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553505
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D47B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553563
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94D693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553787
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3338T C3511T C14408T A22301G A23403G G29508A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553855
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9630C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554130
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950EC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554157
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-950F56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C A6604G C10755T C14408T G21624T A23403G G27877T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554170
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950E68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554189
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950EA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G11083T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554192
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950E95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554196
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950F92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554209
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950E3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C14408T G20352T A23403G GAACTGTAACTT25424- T27244C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554230
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950F38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C534T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G G28371T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554265
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950E77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1800A G2035T C3037T T10257C C14408T A23403G C23854T G25972A G27842T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554296
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950ED1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G C25553T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554318
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950F0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4076A C14408T C18877T T22165C A23403G C24771T GAA25437- G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554320
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950A64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G G27364T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554328
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950B61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C14408T A23403G GTT26155- C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554330
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9509EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554335
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950D4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3895C C12534T C14408T G17590T A19736G A23403G C28310A GGG28881AAC C29284T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554344
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950ABF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C14408T A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554349
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554354
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9512A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C4002T G10097A G11083T G11634T C13536T C14408T C21691T C22716T A23403G C23731T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554360
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950C8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15738T T18260C A20712G A23403G G25429T C25611T T26418C C29025T C29585T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554361
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950A73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G26063T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554362
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9511D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554363
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950B8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C14408T A23403G GTT26155- C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554370
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950D5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C8760T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554379
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19402T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554382
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950A37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GTGGACCCTCAGATT28326- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554383
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950A46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T C18322T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554393
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554395
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9507A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1729T C3037T T3100G G10097A C14408T A20055G A23403G C23731T G25947T T28723C GGG28881AAC G29315C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554396
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950C5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C11919T A13039G C14408T A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554415
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9509C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554434
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9507F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554435
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950DA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554436
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950A55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G G27364T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554439
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9509A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554442
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95091C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554445
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950B16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A12321C C13536T C14408T A23403G C23731T G26063T G27478T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554448
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95092B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G A24014G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554451
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9511B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12145G C14408T C19367T C20759T C21676T A23403G C24826M G27281T C28725T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554460
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950D10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3895C C12534T C14408T G17590T A19736G A23403G C28310A GGG28881AAC C29284T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554463
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950BDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C C20946T T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554464
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950E0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554468
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950ADD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C14408T A23403G GTT26155- C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554476
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950DB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A22320R A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554489
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950A19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G T28494C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554500
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9511F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTCATGTTA510- C2847T C3037T C4002T C9474T G10097A C13536T C14408T G23282T A23403G C23731T T28238C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554505
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95081F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554507
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554516
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950D01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C8760T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554524
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95123E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C534T C854T C3037T G5716T T10453C C11195T C14408T G14428T A21860T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554527
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950BBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12145G C14408T C20759T C21676T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554529
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950B9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554530
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95564D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554535
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950C22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1692C C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554545
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950C9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4076A C14408T C18877T T22165C A23403G C24771T GAA25437- G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554549
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-951201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554558
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95085B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8991T C11289T C14408T T15051C A20255G A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554562
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950B07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C14408T A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554566
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950D2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C3817T C14408T A23403G G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554568
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9509D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554569
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950A0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554570
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950D3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C8760T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554572
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950CE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C6606T C9803A A10786G C10833T C14408T C18687T A23403G C25844T T27811C G28371T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554578
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950B43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C14408T A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554588
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9508F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C9803A A10786G C10833T C14408T C18687T A23403G C25844T T27811C G28371T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554590
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950D89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G160T C241T C3037T T9070C G10097A T13216G G13564A C14408T G20014T A23403G C23731T T24887C C26542T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554592
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554594
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950CB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5974T C6706T C14408T G20931A C21928T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554596
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950E2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554599
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950B52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T T5507A C11074T G11083T C14408T A20268G G21010A C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554602
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95079A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554609
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950BE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G C25553T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554622
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-957CFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15380T C17321T G17516T T20664C A23403G G24821T G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554629
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-958194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T C14408T C16173T C19140T C19374T A23403G G26620C A28211G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554637
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-95812B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11164G C14408T G15406T G21538T G22332A A23403G G25429T G25947K G27583T G29140K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554643
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-958167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T973C C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T G25455T G25555T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554687
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-9581EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G9479T G10097A C13536T C14408T A23403G C23731T T24063C G25409T A25948G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554695
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-95846E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15380T C17321T G17516T T20664C A23403G G24821T G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554712
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-9581D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C5183T C7926T G10097A C13536T C14408T C15026T G16228A C18747T A23403G C23731T C27999A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554751
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-957FF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T973C C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T G25455T G25555T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554760
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-95847D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15380T C17321T G17516T T20664C A23403G G24821T G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554842
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-95806A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC T29410C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554892
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2434T C3037T A5891G A12618C G13690A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554921
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C337T C3037T C7869T C14408T C18877T A23403G G25563T A25744G C26060T C26735T G28209T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554950
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D7DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1926T C3037T T3049C C6312A C9438T A10948G C14408T T14740C A23403G T24313C C25521T C25609T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554952
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C14408T C14786T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554995
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D51E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555006
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D60C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T A3139G A3858G C7948T G8371T C10790T G11083T C14408T C19118T C22477T A23403G G25563T C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555026
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2561C C3037T T5507A G11083T C14408T A20268G A21132G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555029
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-959EE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T C3045T C3373A A4571C C12528T C14408T C14688T A23403G C26270T G27706T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555030
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D4D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C19454T G21142A T23255C A23403G A28065C C28310T GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555045
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D62A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T C8293T A12410G C14408T C15342Y A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555061
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D4E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C8809T C14408T T19839C C19895T A23403G GTT26155- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555082
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2983T C3037T C7834T C14408T C16997T G17278T G20679T A23403G G25429T C26873T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555544
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AF01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1415T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555626
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AEE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C3817T C14408T G17721T A23403G G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555635
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AF5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9630C C14408T A17460G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555683
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95B02B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623C T2800C C3037T C4577T T7009A C9491T C9924T C14408T C19875T A23403G C27046T C27143T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555776
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94B89F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555784
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94BBB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T C3045T C3373A A4571C C12528T C14408T C14688T A23403G C26270T G27706T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555861
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CAF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C14408T A23403G G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555863
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C95F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T G1946T C3037T A3569G A6211G A8659G C14408T T18438C C19488T A23403G C26681T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555899
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CF11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3932A G6961T G10097A C14408T G15982T G17144A C22713T G23401T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555901
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C61C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T A6867C G8353A C8950T G10097A C13536T C14408T C16915T A23403G C23731T GGG28881AAC G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555902
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CB95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21306T C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555907
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G AAC21547- AA21550CT A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555912
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9207T A9236C C14408T G21082C A21085M T21087C A21323G A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555919
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C62B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T T1753Y C3037T C4158T C8318A C12756T C14408T G18859T G21624T A23403G A25359R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555932
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C7CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555933
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D46C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555942
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C9E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555944
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555964
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CF20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C337T C3037T C7869T C14408T C18877T A23403G G25563T A25744G C26060T C26469T C26735T G28209T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555975
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CEF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683Y C3037T C14408T T19590C G23282T A23403G C27625Y T27922Y GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555985
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CD26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T C9073T T10278G C14408T A23403G C25441T G26951T GGG28881AAC CTA28896- T29760C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555988
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C99B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4547G C9665T C12473T A12949G C13665T C14408T C18167T C21952T A23403G A26402G C27046T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556008
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CF99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556040
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2561C C3037T T5507A G11083T C14408T A20268G A21132G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556052
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CF7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C9803A A10786G C10833T C14408T C18687T C22109G A23403G C25844T T27811C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556062
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C97D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556067
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163G C3037T A3481T C14408T C20429T G20995T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556110
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C2370T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556334
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D1A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2561C C3037T T5507A G11083T C14408T C15824T A20268G A21132G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556342
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D43F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T G9049T C13430T C14408T C16289T A23403G G25429T G26230T C26681T A29385G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556347
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556386
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3932A G6961T G10097A C14408T G15982T G17144A C22713T G23401T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556397
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556402
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D36F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A6068G G11083T C14322T C14805T G19252T C19374T C20736T C23707T G26144T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556416
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T A3139G A3858G C7948T G8371T C10790T G11083T C14408T C19118T C22477T A23403G G25563T C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556420
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556422
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D1ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4548G C11479T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556455
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556467
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D3E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T C14676T A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556473
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CB68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556479
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D44E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T T15927C A19650G G21538A A23403G C26645T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556485
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D0B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556514
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T444C C3037T A9634T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558260
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59B5BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C19454T T23255C A23403G A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558269
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59B7E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1817C C3037T C4455T C14408T C14786T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558338
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A01A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1415T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558348
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59B4CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558403
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-579C45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15738T G19388K A23403G G24821T T27718C GGG28881AAC GCCACGCGGAGTAC29737- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558614
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CF466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558619
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59E6B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1846G C3037T A9737G G11447A C14408T C17766T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558620
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A3A0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558631
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A88EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558635
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A2CAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3264T C4391A C11124T C14408T C15848T G18106T G19254T T19893C A23403G C25889T G28371T GGG28881AAC C29197A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558654
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A3B63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C23230T A23403G T23728A A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558671
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A329B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T A2641G C3037T C3622T C14408T C14676T G21119T A23403G C25844T C28087T C28311T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558681
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-5A2EB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T G3596R C14408T T15510C A23403G G27556T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558682
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A1F69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558683
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59DDFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1415T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558685
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59EA40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C1968T C3037T C4158T C8318A G11083T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558686
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A376F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13827C C14408T G18756T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558688
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59DE27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558697
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A2D22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T A2641G C3037T C3622T G11365R C14408T C14676T G21119T A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558704
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A94AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2940T C3037T C9474T C10341T C14408T C19524T T21467C A23403G C23972A G24056A C27046T ATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTT27579- T28693C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558713
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A2BEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3264T C4391A C11124T C14408T C15848T G18106T G19254T T19893C A23403G C25889T G28371T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558729
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A28B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4331T C14408T G17761A A23403G G24368T C25339T G25563T G28727T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558739
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A2D40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13860Y C14408T C15857Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558740
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59E12D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558747
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A3C06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2762A C3037T A8530G C9474T C14408T T17190C A23403G C25688T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558752
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A3019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18511T A23403G C26142T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558754
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59FDCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C10279T C14408T C22858T A23403G G23868T C26256T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558758
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59E8DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C10626T C14408T G15438T C19164T A20268G A23403G C24026T G28690T C28866T A28973T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558761
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A3B90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G25912T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558769
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A3DF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G A23403G G24764A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558773
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A2C07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19893C A23403G T23965C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558776
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A0629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558817
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59F775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13958A C14408T A23403G GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558819
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A2D6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C G19670A A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558821
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59FD28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1187G C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558822
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A77B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3787T A4926C C14408T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558850
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59F62D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T950C C3037T C13620T C14408T A23403G G26467A C27625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558858
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A392D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G25912T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558862
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59E55E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558869
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A15D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T G6589A C14408T A22528G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558874
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A2FA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T A2641G C3037T C3622T C14408T C14676T G21119T A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558892
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A2A49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T C18981T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558898
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A2E10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558899
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59F63C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17999T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558900
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A39E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C23230T A23403G T23728A A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559301
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AD21A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559303
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AD283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1800A G2035T C3037T T10257C C14408T A23403G C23854T G25972A G27842T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559307
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AECB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G A23403G G24764A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559308
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AD669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559324
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AD775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559339
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AD2DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559341
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AD362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559343
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AEBF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C414Y T1442C G2185R C3037T C14408T G18674A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559346
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AEB1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623C C3037T C4577T T7009A C9474T G10324T C14408T A23403G C27046T C27143T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559358
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AD5A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559362
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AEE24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1729K C3037T T3100G G10097A C14408T A20055G A23403G C23731T G25947T T28723C GGG28881AAC G29315C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559365
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AEE15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623C T2800C C3037T C4577T T7009A C9491T C9924T C14408T C19875T A23403G C27046T C27143T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559367
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AD423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559436
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4ACFE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559446
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4ACA13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATG518- C3037T G10265A C14408T C16887T A23207G A23403G G24872T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559448
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AD010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559454
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AC873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4782T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559455
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4ACE44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559471
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49CD86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C14408T A16638G A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559508
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4ACD0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C18568T A19650G C21789T A23403G GGG28881AAC A29647T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559511
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AC776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15544T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559514
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AD0E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559519
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49CE38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559529
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AC20C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559539
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4ACDA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559547
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49CD2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174T C241T C3037T G10265A C14408T G14580T C18252T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559554
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AC925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2508T C3037T C4084T C8208T C13430T C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559557
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4ACC95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559561
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49CD0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559601
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49CD59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10479G C13860T C14408T A23403G G26849T GGG28881AAC A28911T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559603
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AD1B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559619
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-4AC2C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T G21624T A23403G G27877T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559638
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-49CE1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10479G C13860T C14408T A23403G G26849T GGG28881AAC A28911T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559650
 2020-06-14 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AC363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A G11065C C14408T A19650G G21538A A23403G G24095A G25407T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560565
 2020-06-14 2020-09-29
 United States hCoV-19/USA/AK-PHL494/2020
 ATTAAAGGTTTA1- C66T C241T A538G C1059T C3037T T4324G T9107C G10262T C14408T C23029T A23403G G25563T T26543A A28254G C28256T C29358A C29466T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

GWHANPC01000001
 2020-06-14 2020-06-21
 China SARS-CoV-2/human/CHN/Beijing_BJ0617-01-Y/2020
 C241T C3037T C6026T C14408T A23403G GGG28881AAC

MT731743
 2020-06-14 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_210/2020
 C241T C2453T C3037T T10371G C14119T C14408T A23403G G26199T G28321T GGG28881AAC

MT731936
 2020-06-14 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_211/2020
 C241T A1163T C3037T C9050T A9828G C14408T T16939C C20628T A23403G GGG28881AAC

MT731937
 2020-06-14 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_212/2020
 C241T A1163T C2113T C3037T C6120T A8026G C9502T G11083T C12085T C14408T C15960T A23403G C26895T C28435T GGG28881AAC

MT731938
 2020-06-14 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_213/2020
 C241T A1163T C3037T GATTCCTAAAGAGGAAGTTAAGCCATT3880- C11514T C14408T C15180T G18994T T20424C A23403G G28080A GGG28881AAC G29734T

MT811535
 2020-06-14 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1106-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G11083T C13665T C14408T C16468T C17444T A23403G G26049T GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT919525
 2020-06-14 2020-08-22
 Denmark SARS-CoV-2/mink/DK/AD3_Farm1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5421G C14408T C15656T A22920T A23403G C25936T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT919526
 2020-06-14 2020-08-22
 Denmark SARS-CoV-2/mink/DK/AD4_Farm1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A5421G C14408T C15656T A22920T A23403G C25936T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT919527
 2020-06-14 2020-08-22
 Denmark SARS-CoV-2/mink/DK/AD6_Farm1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15656T A22920T A23403G C25936T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT919531
 2020-06-14 2020-08-22
 Denmark SARS-CoV-2/mink/DK/AL3_Farm1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15656T A23403G C25936T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT919532
 2020-06-14 2020-08-22
 Denmark SARS-CoV-2/mink/DK/AL25_Farm1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15656T A22920T A23403G C25936T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_478249
 2020-06-15 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25088T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478250
 2020-06-15 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1987G C3037T C6354T C14408T C20031T A23403G C28810T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478344
 2020-06-15 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6F66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T C21575T A22259G C22858T A23403G GGG28881AAC TTTTCCG29581-

EPI_ISL_478345
 2020-06-15 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6F84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478347
 2020-06-15 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6FB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478366
 2020-06-15 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D7132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T T21581C AAC22528-TT T22537G A23403G G25429T C26681T A29385G C29421T

EPI_ISL_478392
 2020-06-15 2020-06-30
 United Kingdom hCoV-19/England/LIVE-A0C2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9491T C14408T C16616T G17259T T18159G C21575T C22498T A23403G GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479555
 2020-06-15 2020-06-30
 India hCoV-19/India/NIV-64478/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T A21137G A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480704 MT745676
 2020-06-15 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2093/2020
 G1598T T5965Y C6312A G8287T G11083T C11668T C13730T G14874T C23585A C23929T C28311T

EPI_ISL_480709 MT745680
 2020-06-15 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2101/2020
 C241T A1163T C3037T T7540C C7728T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_480710 MT745681
 2020-06-15 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2102/2020
 C241T C3037T C14408T A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_480711 MT745682
 2020-06-15 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2103/2020
 C241T A1163T C3037T T7540C C7728T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_480712 MT745683
 2020-06-15 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2104/2020
 C241T A1163T C3037T T7540C C7728T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_480713 MT745684
 2020-06-15 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2105/2020
 C241T A1163T C3037T T7540C C7728T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_480721 MT745691
 2020-06-15 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2116/2020
 C241T A1163T C3037T T7540C C7728T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_480755 MT745723
 2020-06-15 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2065/2020
 C241T C1707T C3037T C14408T A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_482885
 2020-06-15 2020-07-06
 France hCoV-19/France/OCC-27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T C3784T C5544T G7472A G8371T C14408T A15553G G16075T A17192C A23403G C23635T G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_483498
 2020-06-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1068-SAN/2020
 AT1- C241T C3037T C14408T C14821A C18060A A20268G A23403G C28854T G29374T

EPI_ISL_483516
 2020-06-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1089-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T595C C1059T G2210A C3037T G6008A T6654C T9784C C11074T C12008T G12662A C14408T A23403G C23435T G25563T C25626G G26391A C26801T G28931A

EPI_ISL_483517
 2020-06-15 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1090-SAN/2020
 ATTAAA1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483626
 2020-06-15 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_178/2020
 C241T A1163T C3037T T4387C C10369T C14408T A23403G G25456T C26228T GGG28881AAC

EPI_ISL_483628
 2020-06-15 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_179/2020
 C241T A1163T C2040T C3037T G8174T C14408T G19723T A23403G C25504G GGG28881AAC

EPI_ISL_484219
 2020-06-15 2020-07-08
 United Kingdom hCoV-19/England/HECH-259A46E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T7020G C7420T C14408T A23403G G25563T T25577G C25904T G26842A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484469
 2020-06-15 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C7630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T T4714C G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484470
 2020-06-15 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C7876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2407T C3037T A3421G C4002T T4714C G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484495
 2020-06-15 2020-07-08
 United Kingdom hCoV-19/England/SHEF-CC255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3464T C14408T G20931A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484809 MT750022
 2020-06-15 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T G22051T A23403G C28977T G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484810 MT750023
 2020-06-15 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2037T C3037T T10372C T13641C C14408T A23403G C25469T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484813 MT750026
 2020-06-15 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484826 MT750038
 2020-06-15 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C10369T C14408T A23403G A23732G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484832 MT750042
 2020-06-15 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C14408T T15354C C18646T C18877T A23403G T23563C G25456T G25563T C28737T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484857 MT750066
 2020-06-15 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G16301A T18513C T22054C A23403G T24499C G25563T C27297T C27752T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485708
 2020-06-15 2020-07-09
 Senegal hCoV-19/Senegal/66298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A929G G1148T C1625T C3037T A6639T G8117T G12793T C14408T A20268G A23403G C24023G C25886T C28833T A29819G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_485710
 2020-06-15 2020-07-09
 Senegal hCoV-19/Senegal/66458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3373A C14408T C22227T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_486510 LR860631
 2020-06-15 2020-07-10
 Switzerland hCoV-19/Switzerland/160017_448_G09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2976M C3018M C3037T C5100Y A6491R T6972Y G10265A C14408T C15720T A15972G C19718T A23403G G26700T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486511 LR860627
 2020-06-15 2020-07-10
 Switzerland hCoV-19/Switzerland/160018_449_C05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C412Y G441R C593S C635Y C3037T A3740R G5329R C14408T C19524T G22205C A23403G G23486K C25731T G26230S GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486512 LR860632
 2020-06-15 2020-07-10
 Switzerland hCoV-19/Switzerland/160019_449_D03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C590Y C3037T A5353W C5482Y G5489R G6662R A9869R C10010Y C14408T G17462S T17556Y C19524T T19647Y A20370R G22205C C22347S T22387Y A23403G C25731T C26681Y GGG28881AAC AG29700WT TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486513 LR860628
 2020-06-15 2020-07-10
 Switzerland hCoV-19/Switzerland/160020_449_C07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C635Y T2974Y C3037T T3144K T3618Y A5563W T7022Y C14408T C19524T G22205C C23191Y A23403G C25731T C28253Y GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486514 LR860629
 2020-06-15 2020-07-10
 Switzerland hCoV-19/Switzerland/160021_450_B01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T G4904K C6070Y C7002M C14408T C19524T A21141R G22205C A23403G C25731T C28253T GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_487416
 2020-06-15 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-27/2020
 C241T C1059T C3037T C6406T C14408T G17266T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487417
 2020-06-15 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-28/2020
 C241T C1059T C3037T C6406T C14408T G18972A G21423T A23403G G25563T G29543T T29582C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487418
 2020-06-15 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-29/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T G29543T T29582C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487420
 2020-06-15 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-30/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489905
 2020-06-15 2020-07-14
 United States hCoV-19/USA/WI-GMF-06563/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490726
 2020-06-15 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-1657E5/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A489G C3037T T5465C G6387A C12623T C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_490791
 2020-06-15 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165CD7/2020
 ATTAAAGGT1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C AAAAAAAA29896-

EPI_ISL_490796
 2020-06-15 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165D2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2488T C3037T C3551T T5573C C6380T A6646R C7420T G11801A C14408T C15960T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C A29903-

EPI_ISL_490812
 2020-06-15 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165EC2/2020
 ATTAAAGGTTTATACC1- C36S C241T C775T A1547W C3037T C9438T C14408T G21160R A23403G GGG28881AAC G29777T AAAA29900-

EPI_ISL_490838
 2020-06-15 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-166113/2020
 ATTAAAGGTTTATACCTTC1- C241T C313T C2933T C3037T C6651T C14097T C14408T C18946Y A23403G C25452Y GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_490862
 2020-06-15 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-1662F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T T1871K A2903R C2933T C3037T C6651T C14408T A23403G GGG28881AAC AAAAAAA29897-

EPI_ISL_490865
 2020-06-15 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-16632C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G G27877T GGG28881AAC

EPI_ISL_490867
 2020-06-15 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-16634A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T C28677Y GGG28881AAC T29607C A29903-

EPI_ISL_491051
 2020-06-15 2020-07-16
 Romania hCoV-19/Romania/ROSV_13109/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G1439T C3037T T9697C T10495C G10618A A12875G C14322T C14408T T17137C A20268G A23403G C24865T A29776G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491275
 2020-06-15 2020-07-16
 Portugal hCoV-19/Portugal/R1320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8318A C14408T A20742C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494009
 2020-06-15 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G G27877T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_494069
 2020-06-15 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166A09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A489G C3037T T5465C G6387A A11315R C14408T C19938T G21624T A23403G G24102A AA25800TT GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_494084
 2020-06-15 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166B33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G G27877T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_495027 MT806192
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC290a/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A2292C C2836T C3037T C12213T C14408T C18568T C18877T G21724T C22444T C23039T A23403G G25563T C26735T C29750T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_495028 MT806191
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC290b/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1648T C3037T G4300T G12243T C14408T A16512G C17010T C19154T C23039T A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_495029 MT800024
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4016A C10604T C14408T T16993C A23403G G23611T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495030 MT800029
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC292a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C3743T C4084T G9526T C14408T C18526T C19862T A23403G GGTGAAATC25444- TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495031 MT800030
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC292b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C3743T C4084T C5822T G9526T C14408T C18526T C19862T A23403G GGTGAAATC25444- TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495032 MT806176
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC293a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2836T C3037T C14408T T17011A C18252T C23039T A23403G C23664T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_495033 MT800043
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC293b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2292C C3037T G4300T C14408T A16512G C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C29750T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_495034 MT800045
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC294/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A3427T C3743T C4084T G9526T C14408T C16293T C18526T C19862T A23403G GGTGAAATC25444- TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495035 MT800050
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC295/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2275G C3037T C4084T A9274G C14408T A23403G A25453C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495036 MT800105
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC296a/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C4084T C11020T C14408T A19201G A23403G A23947G TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_495037 MT800284
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC296b/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A2292C C2836T C3037T C4084T C11020T C14408T C18568T A23403G C29750T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_495038
 2020-06-15 2020-07-22
 India hCoV-19/India/GBRC297a/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1479A C3037T C4084T C12439T C14408T G21778A A23403G C29642T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495039 MT800515
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC297b/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A2292C C2836T C3037T C4084T C12439T C14408T G21778A A23403G C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495040 MT800542
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC298a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2836T C3037T C14408T C18568T A23403G C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495041 MT800758
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC298b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2292C C3037T G4300T A16512G T16993C C18877T C19154T G21724T C22444T A23403G G25354T G25563T C26735T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495042 MT800794
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC299a/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2836T C3037T C10138T G11335T C11396T C14408T G16117T C18568T C18877T A23403G G25563T C26735T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_495043 MT800816
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC299b/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A2292C C3037T G4300T C11620T C14408T A16512G C18877T C19154T G21724T C22444T A23403G G25563T C26735T C28854T C29750T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_495044 MT800818
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC300a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2836T C3037T C14408T C18877T C22444T A23403G G24535T G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495045 MT800820
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC300b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2836T C3037T C6573T C14408T C18877T C22444T A23403G G24535T G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495046 MT800845
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC301a/2020
 ATTAAAGGTTTATACCTTCC1- C241T C2836T C3037T C14408T C16443T C18877T A23403G G25563T C26735T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495047 MT800873
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC301b/2020
 ATTAAAGGTTTATACCTTCC1- C241T C313T A2292C C3037T G4300T C11620T C14408T C18568T C18877T C19154T G21724T A23403G G25563T C26735T C26882T C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495048 MT800896
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC302a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2292C C2836T C3037T C14408T C18568T C18877T G21724T C22444T A23403G G25563T C26735T G28881A C29750T T29809C AATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29814-

EPI_ISL_495049 MT800928
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC302b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C2836T C3037T G4300T A16512G C19154T C22444T A23403G G25563T C28854T GGGG28881AAAC C29750T T29809C AATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29814-

EPI_ISL_495050 MT800936
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC303a/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2836T C3037T C3775T C14408T C18568T C18877T C22444T A23403G G25563T C26735T C28854T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_495051 MT800940
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC303b/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C313T A2292C C2836T C3037T G4300T G8179T C14408T A16512G C18877T C19154T G21724T C22444T A23403G G25563T C26735T GGG28881AAC C29750T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_495052 MT800942
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC304a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T C4084T C11020T C14408T A23403G A23947G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495053 MT800977
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC304b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2292C C3037T G4300T C14408T A16512G C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495054
 2020-06-15 2020-07-22
 India hCoV-19/India/GBRC305a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1479A C3037T C4084T A7003G C7765T C11575T C12439T C14408T G19723T A23403G G26840T C27945A C29642T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_495055 MT800995
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC305b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T A2292C C2836T C3037T G4300T C14408T C18568T C18877T C19154T G21724T C22444T A23403G C24792T G25563T C26735T G26840T C29750T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_495056 MT800999
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC306a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2836T C3037T C12076T C14408T T18173A C18877T G21255A C22444T A23403G G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495057 MT801004
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC306b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2836T C3037T C12076T C14408T C18877T G21255A C22444T A23403G G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495058 MT801051
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC307a/2020
 ATTAAAGGTTTATACCTTCCCAG1- A26C C241T C1514T A2292C C3037T C4084T C14408T C21207T G22225T A23403G C25324T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_495059 MT801048
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC307b/2020
 ATTAAAGGTTTATACCTTCCCAG1- A26C C241T C313T C2836T C3037T G4300T G10396T C14408T A16512G C18568T C18877T G21724T G22225T C22444T A23403G C25324T G25563T C26735T C29750T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_495060 MT801043
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G11335T C11620T C14408T C15368T C18877T A23403G G25563T C26735T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495061 MT801006
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC309a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4084T C7728T G10396T C12890T C14408T C21207T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495062 MT800997
 2020-06-15 2020-07-22
 India SARS-CoV-2/human/IND/GBRC309b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2292C C2836T C3037T C14408T C18568T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_497023 MT831615
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2391/2020
 ATTAAAG1- C241T T833C C1059T C3037T C6548T C7860T C14408T T17108A G22592T A23403G G25537A G25563T C26822T C27964T C28887T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497029 MT831544
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2397/2020
 AT1- C241T C3037T C14408T C14768T C15933T G16968T T18123C T19839C C22591T T22825C A23403G G25249T G28193T GGG28881AAC C29784T C29835T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497030 MT831845
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2398/2020
 ATTAAAGGTT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497035 MT831742
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2403/2020
 ATTAAAGG1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G T23482A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497036 MT831531
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2404/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T C14768T C15933T G16968T T18123C T19839C C22591T T22825C A23403G G25249T G28193T GGG28881AAC C29784T C29835T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497037 MT831892
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2405/2020
 AT1- G3371A C8782T C17747T A17858G C18060T T19783C T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497038 MT831677
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2406/2020
 ATTAAAGGTT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497040
 2020-06-15 2020-07-24
 United States hCoV-19/USA/WA-S2408/2020
 ATTAAAGGTT1- C241T C3037T C5512T C14408T C15933T G16968T C19688T T19839C A23403G G27676T G28851T GGG28881AAC G29764T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497042 MT831559
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2410/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T G16968T C18676T T19839C A23354G A23403G A27899G GGG28881AAC C29546T C29686T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497043 MT831865
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2411/2020
 ATTAAAGGTTT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497044 MT831554
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2412/2020
 ATTAAAGGTTTATA1- C241T A2127G C3037T C14408T C15933T G16968T A17233G T19839C A23403G C25635T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497045 MT831728
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2413/2020
 ATT1- C241T C3037T G7393T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497046 MT831538
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2414/2020
 ATT1- C241T C1449T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G C28708T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497048 MT831897
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2416/2020
 ATTAAAG1- C241T A2161G C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497049
 2020-06-15 2020-07-24
 United States hCoV-19/USA/WA-S2417/2020
 ATTAAA1- G1401A G2051A C8782T C16887T C17747T A17858G C18060T A19308G C20031T G23593T C27864T A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497050
 2020-06-15 2020-07-24
 United States hCoV-19/USA/WA-S2418/2020
 ATTAAA1- G1401A G2051A C8782T C16887T C17747T A17858G C18060T A19308G C20031T G23593T A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497051
 2020-06-15 2020-07-24
 United States hCoV-19/USA/WA-S2419/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T G16968T C19688T T19839C A23403G G27676T G28851T GGG28881AAC G29764T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497052 MT831881
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2420/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C14408T T19839C A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497054 MT831721
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2422/2020
 AT1- C241T C3037T G7393T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497055 MT831706
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2423/2020
 AT1- C241T C1059T C3037T G4975T C14408T G15384T A23403G G25523T G25563T T27869C T29194C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497056
 2020-06-15 2020-07-24
 United States hCoV-19/USA/WA-S2424/2020
 AT1- G1401A G2051A C8782T C16887T C17747T A17858G C18060T A19308G C20031T G23593T A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497057 MT831590
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2425/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C14408T C14768T C15933T G16968T T18123C T19839C C22591T T22825C A23403G G25249T G28193T GGG28881AAC C29835T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_497058 MT831745
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2426/2020
 ATTAAAGGTTTATA1- C241T C379A C412T C934T C1059T C3037T C9724T G11083T G11893T C14408T G16707T A23403G A24922G G25563T A29307C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497059 MT831557
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2427/2020
 ATTAAA1- C241T C3037T C4534T G8075A G10996T C11956T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497060 MT831543
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2428/2020
 ATTAAAG1- C241T C3037T C14408T C15933T G16968T T18123C T19839C C22591T T22825C A23403G G25249T G28193T GGG28881AAC C29784T C29835T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497067 MT831549
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2435/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G25313A C27110T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497091 MT831730
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2459/2020
 ATTAAAGGTT1- C241T C3037T C14408T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497096 MT831877
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2464/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497097 MT831789
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2465/2020
 ATT1- C241T C3037T G11083T C14408T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497098 MT831807
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2466/2020
 A1- C241T C3037T G11083T C14408T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497099 MT831663
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2467/2020
 A1- C241T C3037T G11083T C14408T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497100 MT831571
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2468/2020
 A1- C241T C3037T G10549T C14408T C15352T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497101 MT831675
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2469/2020
 A1- C241T C3037T C9430T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497104 MT831665
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2472/2020
 AT1- C241T C3037T C5052T C14408T C15933T G16968T C18131T T19839C A23403G C25710T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497107 MT831719
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2475/2020
 ATTAAAG1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497109 MT831608
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2477/2020
 ATTAAAGGTTTATA1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497110 MT831601
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2478/2020
 ATTAAAGGTTTATA1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497111 MT831633
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2479/2020
 ATT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497112 MT831623
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2480/2020
 ATTAAAGG1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G C28045T G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497113 MT831707
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2481/2020
 ATTAAAGGTTT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497114 MT831655
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2482/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_497115 MT831711
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2483/2020
 ATTAAAGGTTTAT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497116 MT831536
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2484/2020
 C241T C3037T G6349T T8559A G8561A T10190C C10507T C14408T C19145T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_497146 MT831805
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2514/2020
 ATT1- C241T C3037T C6445T C14216T C14408T G16813A G16852T A20559C A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497147 MT831583
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2515/2020
 AT1- C241T A2127G C3037T C3397T C6016T C14408T C15933T G16968T T19839C A23403G C26681T T27210C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497148
 2020-06-15 2020-07-24
 United States hCoV-19/USA/WA-S2516/2020
 ATT1- C21T C241T G343T G970A C3037T C5284T C9565T C14408T C15933T G16968T T19839C A23403G C25587T G28068T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497149
 2020-06-15 2020-07-24
 United States hCoV-19/USA/WA-S2517/2020
 ATTAAAGGTTTAT1- C21T C241T G343T G970A C3037T C5284T C9565T C14408T C15933T G16968T T19839C A23403G C25587T G28068T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497150 MT831735
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2518/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G28028T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497151 MT831761
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2519/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G28028T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497152 MT831842
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2520/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497154 MT831734
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2522/2020
 AT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497155
 2020-06-15 2020-07-24
 United States hCoV-19/USA/WA-S2523/2020
 ATTAAAGG1- G1401A G2051A C8782T C15045T C16887T C17747T A17858G C18060T A19308G C20031T A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497163 MT831636
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2531/2020
 ATTAAAGGTTTATA1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497164 MT831785
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2532/2020
 ATTAAAGGTTT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497165 MT831668
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2533/2020
 ATTAAAGGTTTATA1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497166 MT831718
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2534/2020
 ATTAAAGGTTT1- C241T A1203G C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497168 MT831610
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2536/2020
 ATTAAAGGTTTATAC1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497169 MT831639
 2020-06-15 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2537/2020
 ATTAAAGGTTTAT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_500564
 2020-06-15 2020-07-29
 Singapore hCoV-19/Singapore/749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4893T C6310A C6312A G11083T A11228G C13730T C19524T C23185T C23929T A24915T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501100
 2020-06-15 2020-07-30
 United States hCoV-19/USA/WA-UW-11457/2020
 ATTAAAGGTTTATA1- TCCC18GGGA AAC34TTT C241T C3037T T3630C C14408T C15933T G16968T T19839C A23403G T27846C GGG28881AAC C29762T C29784T

EPI_ISL_501896
 2020-06-15 2020-07-31
 Latvia hCoV-19/Latvia/083/2020
 C241T C3037T C5183T C5822T C14408T A23403G GGG28881AAC

EPI_ISL_507123
 2020-06-15 2020-08-03
 United Kingdom hCoV-19/England/NORT-29BE3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20940T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507124
 2020-06-15 2020-08-03
 United Kingdom hCoV-19/England/NORT-29BE4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508282
 2020-06-15 2020-08-04
 India hCoV-19/India/GA87/2020
 A4T C241T C313T C2065T C3037T C5700A G10465A C14408T C20132T C22792T A23403G GGG28881AAC G29868A

EPI_ISL_508283
 2020-06-15 2020-08-04
 India hCoV-19/India/GA88/2020
 ATTAAAGGTT1- C241T C313T C2065T C3037T G4126T C5700A G10465A C12756T C14408T C22792T A23403G GGG28881AAC G29868A

EPI_ISL_508291
 2020-06-15 2020-08-04
 India hCoV-19/India/IB13/2020
 ATTAAAGGTTTATACCTTCCCA1- C28T C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508293
 2020-06-15 2020-08-04
 India hCoV-19/India/IB15/2020
 ATTA1- C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508294
 2020-06-15 2020-08-04
 India hCoV-19/India/IB16/2020
 ATTAAAG1- C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508296
 2020-06-15 2020-08-04
 India hCoV-19/India/IB18/2020
 A4T C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508302
 2020-06-15 2020-08-04
 India hCoV-19/India/IB24/2020
 AT1- C241T C3037T C8917T C14408T G22113T A23403G GGG28881AAC G29868A

EPI_ISL_508313
 2020-06-15 2020-08-04
 India hCoV-19/India/IB34/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1218T C3037T C8917T C14408T C21736T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508316
 2020-06-15 2020-08-04
 India hCoV-19/India/IB38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C8917T G9389A C13923T C14408T A23403G C27092T GGG28881AAC A29084G G29868-

EPI_ISL_508319
 2020-06-15 2020-08-04
 India hCoV-19/India/IB40/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508321
 2020-06-15 2020-08-04
 India hCoV-19/India/IB42/2020
 ATTAAAGGTTTAT1- T18A C20A C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508323
 2020-06-15 2020-08-04
 India hCoV-19/India/IB44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C8917T C14408T G22113T A23403G GGG28881AAC

EPI_ISL_508719 MT834674
 2020-06-15 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0516/2020
 C241T C1059T C1213T C3037T C10188T C14376T C14408T C17745T A19359G A23403G G23587C T24982C G25563T A26231C T27531C C27964T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_508721 MT834676
 2020-06-15 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0518/2020
 ATTA1- C241T C3037T C3828T C4456T G8131T C14408T C18647T G21204T A23403G C25916T T27299C GGG28881AAC T29148C C29769T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509634
 2020-06-15 2020-08-05
 Spain hCoV-19/Spain/COV005139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T G5665A G8371T C9430T C10336T C14408T G20002K A23403G C25513T G25563T C26111T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_510871
 2020-06-15 2020-08-07
 Sweden hCoV-19/Sweden/20-52071/2020
 C241T C1059T A2206C C3037T C3961T C6696T C7299T C13517T C14408T A23403G G24368T G25563T A29600G

EPI_ISL_510872
 2020-06-15 2020-08-07
 Sweden hCoV-19/Sweden/20-52073/2020
 C241T C1059T A2206C C3037T C3961T C6696T C7299T C13517T C14408T A23403G G24368T G25563T T29023A

EPI_ISL_510873
 2020-06-15 2020-08-07
 Sweden hCoV-19/Sweden/20-52074/2020
 C241T C1059T C3037T C14408T G19816T T23255G A23403G G23593T G24368T G25563T G25912T G25955A C26456T A29424G

EPI_ISL_510874
 2020-06-15 2020-08-07
 Sweden hCoV-19/Sweden/20-52077/2020
 C241T C1059T A2206C C3037T C3961T C6696T C7299T C13517T C14408T A23403G G24368T G25563T

EPI_ISL_510875
 2020-06-15 2020-08-07
 Sweden hCoV-19/Sweden/20-52078/2020
 C241T C1059T A2206C C3037T C3961T C6696T C7299T C13517T C14408T A23403G G24368T G25563T

EPI_ISL_510876
 2020-06-15 2020-08-07
 Sweden hCoV-19/Sweden/20-52079/2020
 C241T C3037T C5002T C14408T G17721T A23403G A23851G C26447T GGG28881AAC C28887T C29762T

EPI_ISL_510877
 2020-06-15 2020-08-07
 Sweden hCoV-19/Sweden/20-52080/2020
 G165A C241T C1059T C2937T C3037T C14408T A23403G G25352T G25563T C26060T C27532T

EPI_ISL_511862
 2020-06-15 2020-08-09
 United States hCoV-19/USA/CA-IGI-0066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T A6716G G11596T C14408T A23403G TTTAGCACTCAATTTGCTT27568- T27693C GGG28881AAC G29781T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_511974
 2020-06-15 2020-08-10
 United Kingdom hCoV-19/England/BRIS-132CA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1441T C3037T A7766G G7873T C9365T G10097A C14408T C19524T C20032T C21057T A23403G G23587T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514610
 2020-06-15 2020-08-17
 India hCoV-19/India/GBRC360/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1479A C3037T A3779G C4084T C12439T C14408T G21778A A23403G T24460C C29642T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514896
 2020-06-15 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2493/2020
 ATTAAAGGTTTATACC1- C241T C829T C1059T C3037T C11916T C14408T C16650T A20675T C21871T C22450T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514897
 2020-06-15 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2494/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514898
 2020-06-15 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2495/2020
 AT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514899
 2020-06-15 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2496/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514900
 2020-06-15 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2497/2020
 AT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514901
 2020-06-15 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2498/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T A5570G C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514905
 2020-06-15 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2502/2020
 C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514907
 2020-06-15 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2504/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29587A G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_516625
 2020-06-15 2020-08-21
 Mexico hCoV-19/Mexico/Tamaulipas-InDRE_39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C3992T C6696T C7104T C14408T A20268G A23403G G25996T G29477T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_516913
 2020-06-15 2020-08-24
 Israel hCoV-19/Israel/CVL4572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C683T C1059T C3037T C6402T T10249C G11083T C14408T G17427T G21193T A23403G G25563T C28320T C28854T

EPI_ISL_518013
 2020-06-15 2020-08-25
 Singapore hCoV-19/Singapore/834_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4893T C6310A C6312A A8547G G11083T A11228G C13730T C19524T C23185T C23929T A24915T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523340
 2020-06-15 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C854T C3037T C12357T C14408T C17135T C17410T G17632T C18877T G20718T C22444T A23403G G25563T C26735T C28854T C29520T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523385
 2020-06-15 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T G14274A C14408T A23403G A24862G C25936T C26013T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523455
 2020-06-15 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C7267T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523486
 2020-06-15 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C3602T A9848G C11109T C13297T C14408T A23403G C23415T G25563T C27493T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523556
 2020-06-15 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1449T C1594T C3037T G3259T C11109T C14408T A23403G G25563T G28221T T28867C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524730
 2020-06-15 2020-08-28
 India hCoV-19/India/GJ-GBRC-374a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C12076T C14408T C18877T G19999T C22444T A23403G G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524731
 2020-06-15 2020-08-28
 India hCoV-19/India/GJ-GBRC-374b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T G2900A C3037T C12076T C14408T C18877T G19999T C22444T A23403G G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_525823
 2020-06-15 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0484/2020
 ATTAAA1- C241T C1059T C3037T C4577T C11916T C14408T A23403G C25466T G25563T G28027T G29742T AAAAAAAAAAAAAA29890-

EPI_ISL_525831
 2020-06-15 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0526/2020
 ATTAAAGGTTTATACC1- C241T C3037T C8818T C14408T C15952T G20980A A23403G GTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29764-

EPI_ISL_525832
 2020-06-15 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0528/2020
 ATTAAAGGTTT1- C241T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_525873
 2020-06-15 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0660/2020
 ATTAAAGGTT1- C241T C3037T G4255T C14408T C15933T G16968T A17342G T19839C C21516T A23403G GGG28881AAC TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_526098
 2020-06-15 2020-09-01
 United States hCoV-19/USA/WA-OHSU-0525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A169G C241T C3037T C8818T G11083T C14408T C15952T G20980A A23403G C24797T GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_526865
 2020-06-15 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A35C C37G C241T C1059T C3037T G6422A C14408T C16260T A19298C T19541A A23403G C25317T G25563T G26690T T27956G C28821A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_526866
 2020-06-15 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0749/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G6422A C14408T C15738T C16260T A23403G C25317T G25563T G26690T C28821A C29870A

EPI_ISL_526867
 2020-06-15 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0750/2020
 ATTA1- C241T C1059T C3037T G6422A C14408T C16260T A23403G C25317T G25563T G26690T T27956G C28821A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_528702
 2020-06-15 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/484/2020
 C241T C3037T C14408T C16750T A21081G A23403G GGG28881AAC

EPI_ISL_529916 MT992731
 2020-06-15 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1114/2020
 ATTAA1- C241T G1659A C2113T C3037T A4838G T5941C C7765T C11455T C14220T C14408T C17690T C18877T A22438T A23403G G25563T C29363T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535272
 2020-06-15 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020126547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T760C C1059T C3037T T4756A C14408T C20555T A23403G G25563T

EPI_ISL_535273
 2020-06-15 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020126554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C14408T C20555T C21772T A22101T A23403G G25563T C28775T

EPI_ISL_535274
 2020-06-15 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020126556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T760C C1059T C3037T T4756A C14408T C20555T A23403G G25563T

EPI_ISL_535276
 2020-06-15 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020126568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C16428T C20555T C21772T A23403G G25563T

EPI_ISL_535694 MW001914
 2020-06-15 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4719/2020
 C241T C3037T A12820G C14408T C18981T A20268G G21204T A23403G C28854T C28887T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535695 MW001915
 2020-06-15 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4722/2020
 C241T T508C C2119T C3037T C3608A G7393T G11528T C14408T C18129T C18248T G19006T A20268G A23403G T24076C C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535697 MW001917
 2020-06-15 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4726/2020
 C241T T2145Y C3037T A14031R C14408T A20268G A23403G T24076C C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535698 MW001918
 2020-06-15 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4727/2020
 C241T C3037T C14408T A20268G A23403G T24076C C28854T G29081T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535700 MW001920
 2020-06-15 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4729/2020
 C241T C1912T C3037T C14408T T16380C A20268G A23403G T24076C G25062T C28854T C29503T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_537531
 2020-06-15 2020-09-16
 United States hCoV-19/USA/CA-UCLA-224/2020
 A1- T224C C241T C3037T C6781T C8626T C11916T C14408T C19185T C21622T A23403G C25919T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_539783
 2020-06-15 2020-09-20
 Ecuador hCoV-19/Ecuador/USFQ-208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T14079C C14408T A23403G G25690T GGG28881AAC

EPI_ISL_539838 MW020075
 2020-06-15 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T A5309G C8078T C10594T C14408T A15911G A23403G G25563T A29725T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539839 MW020076
 2020-06-15 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T C22498T A23403G G24368T G25563T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_540929
 2020-06-15 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C10755T G11365T C12880T C14408T A23403G G28580C GGG28881AAC ATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29725-

EPI_ISL_543018
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543030
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3924T C6196T C14408T T19839C A23403G GGG28881AAC C29085T T29515C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543031
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4890T C5055T C14408T T20769C C22444T G23224T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543036
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1820A C3037T C14408T G15452T G17151T A23403G G25563T C25782T G29179T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543050
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543055
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5840C C14408T C16260T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543062
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4890T C5055T A6502G C14408T T20769C C22444T G23224T A23403G A24772G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543063
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C13115T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543064
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C4931A G9479T C10078T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543065
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C799T C1059T C3037T C7299T C10319T C14408T C14768T C21682T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543071
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543072
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1820A C3037T C14408T G15452T G17151T A23403G G24794T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543073
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1141T C3037T C9163T C9996T C11020T C14408T C16260T A23403G G25563T A26162G C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543076
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4105T C10188T C14408T A23403G C23625T T24982C G25563T C27964T T28208C G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543077
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5869T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A23403G A23947G G25563T C26469G G26828T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543079
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1684T C3037T A3580G C4206T A12556C C14408T C15952T C16260T C18129T A23403G G25563T C26110T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543085
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T C6628T C9521A C12488T C14408T A20268G A23403G C24904T C25614T C28854T G29422T A29567G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543087
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543088
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543090
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6884A C11575T C14408T A16840C C19029T A20268G T22222C A23403G C28115T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543091
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T C14408T G19069T A23403G C27549T G28179C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543092
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C13115T C14408T A23403G G25563T C27964T G29000T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543093
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3702T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543101
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T G3433A C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543102
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T T17137C A23403G G25563T C25584T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543104
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543107
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C4931A G9479T C10202T C14408T C17119A C18508T G18790A C23191T A23403G G25563T C29409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543123
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543147
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1836T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543149
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T10093C C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543190
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T A14185G C14408T C16260T C19586A C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543200
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G T27212C G27561T C27600T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543207
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4148T G4399T C14408T C16611T G17808T A23403G G25563T C27964T T28705C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543253
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1684T C3037T C3397T A3580G C14408T C15952T C16260T C18129T A23403G G25563T C26110T C28453T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543272
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-3903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A9993G C14408T C16260T A23403G G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543305
 2020-06-15 2020-09-23
 United States hCoV-19/USA/TX-HMH-4023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T3112C A5097G C9491T G11083T C14408T C19263A C19524T C22264T A23403G G25273T G25563T C26601T C27005T A27633C C29025T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544203
 2020-06-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-3500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12076T C14408T A23403G G25563T C25844T G25907T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544208
 2020-06-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-3506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T9429C G11083T C14408T C20936T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544216
 2020-06-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-3516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C11976T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544228
 2020-06-15 2020-09-24
 United States hCoV-19/USA/TX-HMH-3532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C92T C241T C1059T T1936C C3037T C13487T C14408T C16260T C20429T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553348
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954D67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553506
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A51E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554392
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-955698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554488
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950DC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C8127T C10277Y G11083T G12052T C14408T A23403G G24368T G25563T G27987A G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554639
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-9588AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6843T C11345T C14408T G20940T C22208T A23403G C27509T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554660
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-95897E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1404T C3037T C4002T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554674
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-9589C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T C19488T A23403G GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554690
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-9589BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1853T T5065C C8782T C9223T G11230T C25046T T28144C C28146T T28867C G28878A C29686T CG29741TA CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554698
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-958B3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554706
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-95896F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A T10771C G13045T C13536T C14408T C20762T A23403G C23731T A25948G G26152T C27247T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554707
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-9588CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC T29410C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554717
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-9588F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC T29410C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554722
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-958941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T A5073C C9474T C14408T C19983T G21724T A23403G C24096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554729
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-958844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4596T T11915G A11992T C12100A C14408T G23120T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554739
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-9589F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C7488T C14396T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554766
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-958880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G A6211G A6518G A8659G G11335T C14408T T17178C C19488T A23403G C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554773
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-958853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C3037T C5482T C8318T A9737G C14408T G17944T C18490T C18747T TTA21991- A23403G GGG28881AAC A29389G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554789
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-9588EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1916G C3037T C4002T G10097A A11782G C13536T C14408T A14493M A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554825
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-958A3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C14396T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554852
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-958A11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C14396T C14408T A23403G G25429T C27686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554857
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-958A6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11164G C14408T G15406T G21538T G22332A A23403G G25429T G27583T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554860
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-958B4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3045Y C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554878
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D54B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554884
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CEA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1314Y A2641G C3037T C9803A A10786G C10833T C14408T C14931T C18687T A23403G C25844T T27811C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554943
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CE4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3267T C14408T A14791T G17561A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555017
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17546C G17551A A23403G T27264G C27849A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555047
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21123K A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555050
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D6EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T G7693K C8318A C14408T G18859T G21624T A23403G C25521Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555059
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D6B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21606T A23403G C24374T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555079
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D55A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8479G C11653Y C14408T G20931A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555094
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A264G C3037T A6324G A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555098
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D6FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635T C2675T C3037T C14408T C20235T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555099
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D61B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T A3139G A3858G C7948T G8371T C10790T G11083T C14408T C19118T C22477T A23403G G25563T C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555154
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555161
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555164
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FFF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C8597T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555185
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FD23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555193
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- C1415T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555209
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9502B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A1163G C2455T C3037T A3481T C14408T C20429T G20995T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555215
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9501F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555217
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FFA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3903T A6068G G8371T G11083T C14408T C15952T A20079G A20599G C22477T A23403G C25521T G25563T G28851T C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555227
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FAFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555235
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G A6211G A8659G G12514T C14408T T17928Y C18508T C19488T A23403G C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555242
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FD32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623C C3037T C4577T T7009A C14408T A23403G C27046T C27143T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555262
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F94D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4099T C4391A C7594T C14408T C15848T G17808T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555271
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FDE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555275
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FD7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T T17353C A23403G C25844T C28087T GGG28881AAC C29160T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555281
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95041B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C14408T C21637T A23403G A28169G GGG28881AAC G29557C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555285
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FC44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4933C C14408T C19402T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555287
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C8597T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555292
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9501D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1916R C3037T C4002T G10097A A11782G C12396Y C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555298
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FC62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T A9997C G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555300
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A G10700A C14408T C15240T A19650G A23403G G27841T GGG28881AAC G29179T G29260T G29540T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555508
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AF7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20931A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555516
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95ADBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10513C C11669T C14408T C17678T G19086T A23403G T27851C GGG28881AAC C29541T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555531
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95B094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5526A T9630C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555533
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95B00D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555548
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95ADCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8644C C14408T A17943G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555550
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95B0C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555570
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AE13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555585
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AFF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555587
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AF6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C C17913T A20255G C20698A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555592
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AE22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555642
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95B0A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11279C T14331C C14408T A15278G A23403G C25350T G28487A G29140K C29535T G29764T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555681
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95B0EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11279C T14331C C14408T A15278G A23403G C25350T G25429T G28487A C29535T G29764T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555685
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95ADDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7042T T12247C C14408T A23403G C27752T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555698
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95B058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1528T C3037T C14408T T19893C A23403G GGG28881AAC G29737T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555744
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AD9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10513C C11669T C14408T C17678T G19086T A23403G T27851C GGG28881AAC C29541T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555754
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95ADAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1989G C3037T C6582T C7321T C12484T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555798
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94F725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T G21624T A23403G G27877T GGG28881AAC G29179A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555804
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1426T C2070Y C3037T T9518C C14408T G15743A A23403G C24904Y GGG28881AAC G29332T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555836
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CEBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555837
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CE23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2983T C3037T C7834T C14408T C16997T C17336T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555841
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CA5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4300T T9880C A11736G C14408T A23403G C26606T C26894T C28290T G28882T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555845
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C9F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555847
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CEAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555849
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C6FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A23403G C26029A C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555851
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CF5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555854
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1442C C3037T C14408T G18674A A23403G GGG28881AAC G29239C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555857
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CD08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555867
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5689R A11772R C14408T C18555T G21974T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555871
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C54C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C19454T T23255C A23403G A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555872
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CE05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555876
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15738T T18260C A20712G A23403G G25429T C25611T T26418C C29025T C29585T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555878
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T A8450G G9473A G10097A C14408T C14605T G17721T C18032T C21614T TTA21991- A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555879
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D03B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555882
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CE7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555883
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CDAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1181T G1914A C3037T G4399T C8247T C8917T C14408T T16456C C18687T T18753C A23403G C23638T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555886
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C4B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555888
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94C737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C11653T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555889
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D02C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555890
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CD44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C11767Y C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555893
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CA3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T C17125T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555898
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CDCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T C16084T T19893C A23403G C26625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555900
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1188T C3037T A4801G G7675T T8908C C14408T G14547T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555903
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C5D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C19454T T23255C A23403G A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555908
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CE32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323A C14408T C16859T C20555T A23403G GGG28881AAC A28967C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555913
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CD35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C18807T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555915
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C5A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C19454T G22216R T23255C A23403G A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555917
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CBE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T A20055G A23403G C23731T G25947T T28723C GGG28881AAC G29315C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555920
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C46D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G25352T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555923
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C5B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C19454T T23255C A23403G A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555926
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CBB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4486A A11279C T14331C C14408T A15278G A23403G C25350T G28487A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555928
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94C746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555930
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6016T G10097A C14408T C21639T A21875C A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555935
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C52E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15738T T18260C A20712G A23403G G25429T C25611T T26418C C29025T C29585T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555936
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CD71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1048T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555938
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CB59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555943
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C6A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16049T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555946
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C14768T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555951
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CDBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T C16084T T19893C A23403G C26625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555954
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CDF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555956
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CDEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C26527Y C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555959
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D01D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555962
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CCDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C3817T C14408T G21641K A23403G G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555965
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CBA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555970
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16049T A23403G T27704Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555978
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94C764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555980
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CA7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G G28423T GGG28881AAC G29557T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555981
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CCB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G G25352T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555987
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C47C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555991
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C53D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15738T T18260C A20712G A23403G G25429T C25611T T26418C C29025T C29585T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555999
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C7BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556016
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CB3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C3037T T4690C C8991T C11289T C14408T T15051C A20255G A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556017
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CA2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556027
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CF3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C534T C854T C3037T G5716T T10453C C11195T C14408T G14428T A21860T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556028
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C48B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T T10213Y C14408T C19011T A23403G A26927G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556033
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C1968T C3037T C4158T C8318A G11083T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556036
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CCFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G A25974G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556038
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C9B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13548T C14408T C21017T A23403G GGG28881AAC A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556048
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CB1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8991T C11289T C14408T T15051C A20255G A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556051
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CFF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556057
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1314T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556070
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CD80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556071
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C56A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C19454T T23255C A23403G C24319T A28065C C28310T GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556072
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94CA10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556280
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95BE6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T G13201T C14408T C19011T A23403G A26927G C27679T G27996A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556315
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D37E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G G11083T C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556319
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D3AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T G17427K C21637T A23403G A28169G A28848M GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556320
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D2DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A513G C3037T T9139C C14408T A15580G C20936T C21691T A23403G C23709T G24821T A26197T C27630T TTA27698- G28436T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556346
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D1B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C9042T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556367
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C9042T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556441
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D39C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC TTC29728- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558238
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59AC8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G TGGAAC25422- C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558240
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59AC20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558256
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59AD0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T T5507A C11074T G11083T C14408T A20268G G21010A C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558259
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59A358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C2106T C3037T C3817T C14408T T21124C A23403G G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558262
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-5660D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T G15910T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558263
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59A4FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C2106T C3037T C3817T C14408T T21124C A23403G G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558276
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59A8FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C12473T C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558321
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59B2E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T T7061C C14408T A23403G C23664T C24374A T25257C G27261T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558329
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59A7E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558332
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59B0C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3787T A4926C C14408T G21624T A23403G GGG28881AAC G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558335
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59A992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21123K C21575Y A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558345
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59A8C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C934T C3037T A3342G C14408T C20320T A20475G A23403G C25626T C27684T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558350
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59A974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558355
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59AD69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558389
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59AAF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C18568T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558394
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59AB8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558395
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-59A8D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21123T A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558443
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CEC32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2583T C3037T C9430T G10097A C14408T C17012T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558457
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CF448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C504T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558461
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CF475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558495
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CF150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C7764Y C14408T T17353C A23403G C25844T C28087T GGG28881AAC C29160T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558526
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CEF57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8326Y C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558547
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CEFFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C504T C3037T A8031R A9433T G10265A A11887W C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558593
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CF0BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558623
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A9ACA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2675T C3037T C14408T C19102T C19884Y G22427A A23403G G27754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558625
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-5C2102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A489G C3037T T5465C G6387A C14408T C19524T G21624T A23403G G24102A AA25800TT GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558628
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AA9EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C C17913T A20255G C20698A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558629
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A55BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T C16376T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558632
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A9B7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11750T C14408T C16616T C21575T C22498T A23403G GGG28881AAC G29300C C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558639
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A525D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558657
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AA908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558658
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AB257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1528T C3037T C14408T T19893C A23403G GGG28881AAC G29737T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558669
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A56CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G9646T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558675
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A5563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G9646T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558677
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AA971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4400A C14408T A23403G C24378T C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558680
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A9F9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11750T C14408T C16616T C21575T C22498T A23403G GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558689
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AAF06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558693
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AA99F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558709
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AA829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558719
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AA610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G T28494C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558722
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A0C27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558727
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5BA228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13548T C14408T C21017T A23403G GGG28881AAC A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558728
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B8DDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T A4624G C14408T C18877T A23403G G24197T G25563T C26735T TT29726- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558735
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C1C6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T T7061C C14408T A23403G C23664T C24374A T25257C G27261T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558736
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AA65C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C C17913T A20255G C20698A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558744
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AB336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T T22831C A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558779
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A5080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14120T C14408T A23403G C23731T C28045T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558797
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A4C23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10513C C11669T C14408T C17678T G19086T A23403G T27851C GGG28881AAC C29541T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558815
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B9E70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558840
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B9B79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558841
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A5A91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558847
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AA80B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1723C C3037T T5507A C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558857
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AA698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G A24367G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558863
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A0BB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558873
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AAD93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T T4714C G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558876
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A5A82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5004G T5779C C14408T A23403G C25728T G25951T GTTCTA28090- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558881
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C191A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T T22831C A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558889
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AA7A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T A20268G A23403G A25974G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559310
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AEA99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5826Y T6842K G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559342
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AED45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4547G C9665T C12473T C13665T C14408T C18167T C21952T A23403G A26402G C27046T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559348
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AE99C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A19950G A20047G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559363
 2020-06-15 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AEA20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GGG28881AAC C29203T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560976
 2020-06-15 2020-09-30
 Sweden hCoV-19/Sweden/20-52076/2020
 C241T C1059T A2206C C3037T C3961T C4421T C6696T C7299T C13517T C14408T A23403G G24368T G25563T

EPI_ISL_566030
 2020-06-15 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T A5011M C7528T C14408T G17790A G22599A A23403G C24023T G25563T C28893T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_566052
 2020-06-15 2020-10-01
 United Kingdom hCoV-19/England/202540896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C6681T C7162T C10626T C14408T G15438T C19164T A20268G A23403G C24026T G28690T C28866T G29810T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT740435
 2020-06-15 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_179/2020
 C241T A1163T C2040T C3037T G8174T C14408T G19723T A23403G C25504G GGG28881AAC

MT740440
 2020-06-15 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_178/2020
 C241T A1163T C3037T T4387C C10369T C14408T A23403G G25456T C26228T GGG28881AAC

MT811503
 2020-06-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1068-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C14821A C18060A A20268G A23403G C28854T G29374T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811521
 2020-06-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1089-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- T595C C1059T G2210A C3037T G6008A T6654C T9784C C11074T C12008T G12662A C14408T A23403G C23435T G25563T C25626G G26391A C26801T G28931A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811522
 2020-06-15 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1090-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT953876
 2020-06-15 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-374a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C12076T C14408T C18877T G19999T C22444T A23403G G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT953877
 2020-06-15 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-374b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T G2900A C3037T C12076T C14408T C18877T G19999T C22444T A23403G G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MW006563
 2020-06-15 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020126547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T760C C1059T C3037T T4756A C14408T C20555T A23403G G25563T

MW006564
 2020-06-15 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020126554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C14408T C20555T C21772T A22101T A23403G G25563T C28775T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MW006565
 2020-06-15 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020126556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T760C C1059T C3037T T4756A C14408T C20555T A23403G G25563T

MW006567
 2020-06-15 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020126568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C16428T C20555T C21772T A23403G G25563T

EPI_ISL_468138
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Suceava-5709/2020
 ATTAAAGG1- C241T C3037T C14408T A20268G A23403G C27707T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_468139
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Suceava-5710/2020
 ATTAAA1- C241T T2593C C3037T C14408T A20268G A23403G TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_468140
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Suceava-5722/2020
 ATTAAAGGTTTATA1- C241T T2593C C3037T C14408T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_468141
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Suceava-5806/2020
 ATTAAAGG1- C241T T2593C C3037T C14408T A20268G A23403G C23481T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_468142
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Suceava-5816/2020
 A1CCA C241T C3037T C14408T G16365T A20268G A23403G T29867C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869GT

EPI_ISL_468143
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Suceava-5893/2020
 ATTAAAGGTTTAT1- C241T T2593C C3037T C14408T A20268G A23403G C23481T T25554G

EPI_ISL_468144
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Suceava-5894/2020
 ATTAAAGG1- C241T C3037T C14408T G17964T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_468145
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-6451/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C14408T T19839C A23403G GGG28881AAC -29904AAAAA

EPI_ISL_468146
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Suceava-11085/2020
 ATTAAAG1- C241T C3037T C14408T A20268G A20634G A23403G C25703T G29747T -29904AAAAAAAAAA

EPI_ISL_468147
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-12292/2020
 AT1- A4T C241T C3037T C14408T T19839C A20832C A23403G GGG28881AAC T29859A G29861C G29864T T29867C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869GT

EPI_ISL_468148
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-12296/2020
 A1T AAGGTTT5- C241T C3037T C14408T T19839C G22484T A23403G GGG28881AAC G29864T T29867C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869GT

EPI_ISL_468149
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-12546/2020
 ATTAAAGG1- C241T C3037T C14408T T19839C A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_468150
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-12547/2020
 ATTAAAGGT1- C241T A2270G C3037T C14408T C16049T T19772C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_468151
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-13907/2020
 ATT1CCG A6T TTT9GGG C241T C3037T C14408T C16049T A23403G GGG28881AAC G29861C G29864T T29867C ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869GT

EPI_ISL_468152
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-14251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T T6775- AAATATTATAATTTGGTTTTTACTATTAAGTGTTTGC6946- C14408T C16049T A23403G GGG28881AAC A29874C AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_468153
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-14545/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C16049T A23403G GGG28881AAC

EPI_ISL_468154
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-14658/2020
 ATTAAAGGTTTAT1- C241T C3037T A9744G C14408T C16049T A22803C A23403G C28603T GGG28881AAC A29874C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_468155
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Bucuresti-15503/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C16049T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_468156
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Mioveni-24095/2020
 ATTAAAGGT1- C241T C3037T C14408T T19839C A23403G GGG28881AAC -29904AAAAAAAAAA

EPI_ISL_468157
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Suceava-31645/2020
 ATTAAAGGTTTATACCTTCCC1- C241T A2140G T2537C C3037T T9697C C11866T C14408T C15141T A20268G CCTTAAATTAAGGGGTACTGCTGTTATGTCTTTAAAAGAAGGTCAAAT21411- C21575T A23403G A26487T T29726- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_468158
 2020-06-16 2020-06-16
 Romania hCoV-19/Romania/Suceava-31646/2020
 ATTAAAGGT1- C241T G1439T C3037T T9697C T10495C G10618A C14322T C14408T T17137C A20268G A23403G T27484C -29904AAAAAAAAAA

EPI_ISL_477136
 2020-06-16 2020-06-28
 Bangladesh hCoV-19/Bangladesh/CHRF_0027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T A10323G G12685T C14408T C15579T C21691T G21809K A23403G G26730T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_477140
 2020-06-16 2020-06-28
 Bangladesh hCoV-19/Bangladesh/CHRF_0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T A2026W T2201Y A2977W C3037T G4787S T4867W A7186W T10309W C13051T C14408T T15096W A15779G A16512G A17406G C18404Y G21255C G21809K T23281C A23403G A26178W A26986W GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_477233
 2020-06-16 2020-06-29
 India hCoV-19/India/InStem_NCBS_0032/2020
 A1T A4C -8CAGAAGACGGCATACGAGATGCGCGAGAGTGACTGGA T11C T13G -16GTGTGCT C21G GG23TC AAC26- C64T C241T C1218T C3037T C8917T C14408T C18364T T19914C G21974T A23403G C27110T T27384C GGG28881AAC

EPI_ISL_477237
 2020-06-16 2020-06-29
 India hCoV-19/India/InStem_NCBS_0036/2020
 AT28881GGGAG AA4TC GTT8ACG A12G A14G CT16TC C19T AGGTAACAAACCAA22GATC C36T C241T G1655T T1947C C3037T G8491A C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_477238
 2020-06-16 2020-06-29
 India hCoV-19/India/InStem_NCBS_0037/2020
 A1G AA4-C GTT8ACG A12G A14G CT16TC C19T AGGTAACAAACCAA22GATC C36T C241T C1218T C3037T C8917T C14408T A23003G A23403G C27110T T27384C GGG28881AAC ATGA29866GCTG AA29871CT A29874T AAA29876TGG A29881G AAAAA29883GCCCT AAAAA29890TGTGT AA29899TT A29903TTTTAGTAGTGCTATCCCCATGTGATTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

EPI_ISL_477796
 2020-06-16 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B4037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477798
 2020-06-16 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B4EC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3140T C3874T C10645T C11455T C13426T C14408T A20055G T21378C C21587T A21643G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478348
 2020-06-16 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6FC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T C21575T C22858T A23403G GGG28881AAC TTTTCCG29581-

EPI_ISL_478349
 2020-06-16 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6FDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478350
 2020-06-16 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6FEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478351
 2020-06-16 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D6FFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A C14408T A19650G G21538A A23403G G25407T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478721
 2020-06-16 2020-06-30
 United Kingdom hCoV-19/England/NOTT-112037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T A6708G C14408T C14676T C18657G A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478722
 2020-06-16 2020-06-30
 United Kingdom hCoV-19/England/NOTT-112046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C6429T C14408T A23403G T27264G C28093T GGG28881AAC G29543A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_479556
 2020-06-16 2020-06-30
 India hCoV-19/India/NIV-64850/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T A23403G C28153T GGG28881AAC G28899C A29491G G29690T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479557
 2020-06-16 2020-06-30
 India hCoV-19/India/NIV-64877/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A T6895C T10009C C10714T A12986G C14408T G14829T G15708T A23403G G25273T C27889T GGG28881AAC G29402T C29784T AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479558
 2020-06-16 2020-06-30
 India hCoV-19/India/NIV-64904/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C7101T C14408T A23403G C28054T GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479559
 2020-06-16 2020-06-30
 India hCoV-19/India/NIV-64905/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C2857T C3037T C5700A C7101T C14408T C22480T A23403G G25775T C28054T GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479560
 2020-06-16 2020-06-30
 India hCoV-19/India/NIV-64908/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T G2407T G2516T C3037T T3478C C5700A A10323G C12412T C14408T A23403G G28001T GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479562
 2020-06-16 2020-06-30
 India hCoV-19/India/NIV-65282/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5025T C5700A C14408T G16827A C19602T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479563
 2020-06-16 2020-06-30
 India hCoV-19/India/NIV-65417/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A G11417T C11620T C14408T A23403G C28256T GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479564
 2020-06-16 2020-06-30
 India hCoV-19/India/NIV-65433/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14206T C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479565
 2020-06-16 2020-06-30
 India hCoV-19/India/NIV-65813/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T A1639G C3037T G5230T C5700A G8024T C14408T A23403G C23896T GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479566
 2020-06-16 2020-06-30
 India hCoV-19/India/NIV-65829/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C190T C241T C313T C3037T C5700A C7600T A13189G C14408T G22708A A23403G G25838T GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479567
 2020-06-16 2020-06-30
 India hCoV-19/India/NIV-65835/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C190T C241T C313T C3037T G3955T C5700A C7600T C14318T C14408T G22708A A23403G G25838T GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479568
 2020-06-16 2020-06-30
 India hCoV-19/India/NIV-65847/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T G2879A C3037T C5700A C9451T G11243T C14408T A23403G C24337T G24933T G27676A GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479570
 2020-06-16 2020-06-30
 India hCoV-19/India/NIV-65877/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C190T C241T C313T G837T C3037T C5700A C7600T C14408T G16897T G22708A A23403G G25838T GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_479571
 2020-06-16 2020-06-30
 India hCoV-19/India/NIV-65880/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C1498T C3037T C5700A C14206T C14408T A23403G GGG28881AAC AGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29824-

EPI_ISL_480716 MT745687
 2020-06-16 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2110/2020
 C241T C3037T C8327Y G10097A C13620T C14408T C21365T C22388T A23403G

EPI_ISL_480717 MT745688
 2020-06-16 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2111/2020
 C241T C3037T G3250T G3728T C5301T T8737C C14408T C18877T A23403G G25563T C26735T C28657T G28975T C29274T

EPI_ISL_480760 MT745728
 2020-06-16 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2160/2020
 A39M C241T C3037T C14408T A22339M A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_480769 MT745737
 2020-06-16 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2156/2020
 C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_482867
 2020-06-16 2020-07-06
 South Africa hCoV-19/SouthAfrica/KRISP-0280/2020
 A1- C241T C3037T C6762T T12503C C14408T A23403G G25770T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_483515
 2020-06-16 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1088-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T T14910C A16052G A20268G A23403G T24076C GG25690TT C28854T

EPI_ISL_483632
 2020-06-16 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_187/2020
 G199T C241T A1163T C3037T C6990T A8026G C9502T G11083T C14408T A23403G C26895T GGG28881AAC

EPI_ISL_483633
 2020-06-16 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_188/2020
 C241T A1163T C3037T C14408T G20580T A23403G G26720T GGG28881AAC

EPI_ISL_483694
 2020-06-16 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_186/2020
 C241T C683T C2836T C3037T T3836A G4504T C14408T C14708T C18877T C22444T C23114A A23403G G25563T C26735T C28854T

EPI_ISL_483911
 2020-06-16 2020-07-08
 United Kingdom hCoV-19/England/BIRM-6098B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1365C C3037T G10097A G11083T C14408T G18651T A23403G G23608T C23731T T24763C G25757T C28093T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484262
 2020-06-16 2020-07-08
 United Kingdom hCoV-19/England/LIVE-A1B1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9491T C14408T C16616T G17259T T18159G C21575T C22498T A23403G GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484263
 2020-06-16 2020-07-08
 United Kingdom hCoV-19/England/LIVE-A1B4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T14217C C14408T C16616T C21575T C22498T A23403G GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484678
 2020-06-16 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR3896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A363G C2146T C3037T C14408T C16887T C19170T G19509A G20134T G21494A A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484820 MT750032
 2020-06-16 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1439A C3037T A6088G C14408T T15354C T17150C C18877T C19529T C22227T A23403G G25563T A27118G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484830 MT750041
 2020-06-16 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C14408T T15354C C18646T C18877T A23403G G25456T G25563T C28737T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484831
 2020-06-16 2020-07-08
 United States hCoV-19/USA/WI-UW-456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11521- C14408T G16301A T18513C T22054C A23403G T24499C G25563T C27297T C27752T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484840 MT750050
 2020-06-16 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9120T C14408T A19899T A21464G A23403G G25444A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487421
 2020-06-16 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-31/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489906
 2020-06-16 2020-07-14
 United States hCoV-19/USA/WI-GMF-06615/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489907
 2020-06-16 2020-07-14
 United States hCoV-19/USA/WI-GMF-06616/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489908
 2020-06-16 2020-07-14
 United States hCoV-19/USA/WI-GMF-06729/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_490202
 2020-06-16 2020-07-15
 Spain hCoV-19/Spain/HUB-50378813/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C1377T C3037T C14408T A20268G A23403G C23638T C27476T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_490413
 2020-06-16 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A4314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T C3037T C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490414
 2020-06-16 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A4323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T C3037T C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490415
 2020-06-16 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A4332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490417
 2020-06-16 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A436F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T C3037T C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490418
 2020-06-16 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A437E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T C3037T C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490419
 2020-06-16 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A438D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T C3037T C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490718
 2020-06-16 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C3037T T8944C C14408T C14741T A23403G A28294C AAAAAAAAAAAA29892-

EPI_ISL_490783
 2020-06-16 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165C40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C775T A1547W C3037T C9438T C14408T G21160R A23403G GGG28881AAC G29777T AAAAAAAAAA29894-

EPI_ISL_490799
 2020-06-16 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165D98/2020
 ATT1- C241T C3037T T8944C C14408T C14741T A23403G A28294C AAAAAAAAAAAAA29891-

EPI_ISL_490830
 2020-06-16 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-166070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8944C C14408T C14741T A23403G A28294C

EPI_ISL_490833
 2020-06-16 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-1660AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8944C C14408T C14741T G22484T A23403G G27382T A28294C AAAAAAAAAAA29893-

EPI_ISL_490850
 2020-06-16 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-1661F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_490855
 2020-06-16 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-16624D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8944C C14408T C14741T A23403G A28294C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_492209
 2020-06-16 2020-07-20
 United Kingdom hCoV-19/England/NORT-293361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G431A ATG1605- A2194G G6566A C9778T C16466T G18281T C20270T C25156T G26754A A29683T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493003
 2020-06-16 2020-07-20
 United Kingdom hCoV-19/England/20284212304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C228T C241T C2638T C3037T GT5743SY A7705T C9246T C14408T A23403G A23416T G23611K A27938T GGG28881AAC A29430T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_494016
 2020-06-16 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C12781T C14408T G21624T A23403G G27877T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494025
 2020-06-16 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C3037T T3049C C14408T G21624T A23403G G27877T GGG28881AAC C29642T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_497041 MT831748
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2409/2020
 A1- G701T C8782T G11417T G15406A T16993A C17010T C17747T A17858G C18060T T22291C T28144C C28292A AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_497068 MT831562
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2436/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_497069 MT831895
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2437/2020
 AT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_497070
 2020-06-16 2020-07-24
 United States hCoV-19/USA/WA-S2438/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497071 MT831863
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2439/2020
 ATTAAAGGTTT1- G1401A C7948T C8782T C17747T A17858G C18060T A19308G T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497072 MT831561
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2440/2020
 AT1- C241T C3037T A13755G C14408T C15352T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497074 MT831848
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2442/2020
 ATTAAAGGTTT1- C241T C3037T C12513T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497075 MT831891
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2443/2020
 AT1- C8782T C17747T A17858G C18060T C21575T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497076 MT831768
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2444/2020
 ATTAAAGG1- C241T C3037T C14408T C15237T G15260T C15933T G16968T T19839C A23403G G26428T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497077 MT831580
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2445/2020
 ATTAAA1- C241T C3037T T8559A G8561A T10190C C10507T C14408T C19145T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497078 MT831887
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2446/2020
 AT1- C8782T C17747T A17858G C18060T T21745C C24381T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497079 MT831709
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2447/2020
 ATTAAAGG1- C241T T2077C C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497080 MT831687
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2448/2020
 ATTAAAGG1- C241T C3037T C3992T G4510T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_497081 MT831868
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2449/2020
 ATTAAAGGTT1- C241T C3037T C6445T C14408T G16813A G16852T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497082 MT831595
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2450/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T T9091C C14408T A23403G C24382T G25563T C27630T GGG28881AAC G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497083 MT831896
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2451/2020
 ATTAAAGGTTT1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497085 MT831643
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2453/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C10815T C14408T C15933T G16968T C17502T T19839C A21127G A23403G G25445T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497086 MT831889
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2454/2020
 A1- C225T C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497087 MT831890
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2455/2020
 A1- C8782T C17747T A17858G C18060T T28144C AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_497088 MT831567
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2456/2020
 AT1- C241T C3037T G12256T C14408T C15933T T19839C A23403G C25452T GGG28881AAC G29260T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497089 MT831624
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2457/2020
 ATTAAAGGTTT1- C241T A2127G C3037T C3397T C14408T T15069C C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497090 MT831843
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2458/2020
 AT1- C241T C3037T C14408T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497092 MT831841
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2460/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497102 MT831750
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2470/2020
 AT1- C241T A2161G C3037T C4777T C5758T C14408T C15141T C16376T T18453C C18877T T22020C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497103 MT831816
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2471/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T G16968T C18747T T19839C C21575T A23403G C28674T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497105 MT831830
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2473/2020
 ATTAAAGGTTTAT1- C241T C3037T C6445T C14216T C14408T C14724T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497106 MT831779
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2474/2020
 AT1- C241T C3037T A4197G G9479T C14408T G16813A A23403G G24368C T25783C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497117
 2020-06-16 2020-07-24
 United States hCoV-19/USA/WA-S2485/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G A27488G C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497118 MT831674
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2486/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497119 MT831653
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2487/2020
 ATTAAAGGTTTAT1- C241T C3037T G3452A C3992T G4510T C8311T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497120 MT831744
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2488/2020
 ATTAAAG1- C241T C3037T T13234C C14408T C15352T C15933T G16968T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497121 MT831821
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2489/2020
 ATTAAAGGTTTATAC1- C241T C3037T C6445T C14408T G16813A A23403G G28003T GGG28881AAC C29750G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497122 MT831669
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2490/2020
 A1- C241T A2127G C3037T C3397T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_497123 MT831616
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2491/2020
 AT1- C241T A2127G C3037T C3397T C14408T C15933T G16968T G17658T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497124
 2020-06-16 2020-07-24
 United States hCoV-19/USA/WA-S2492/2020
 A1- C241T C3037T C5144T C14408T C15933T G16968T C19688T T19839C A23403G G27676T GGG28881AAC G29764T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497125 MT831630
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2493/2020
 A1- C241T G1157T A2161G C3037T C4993T G11083T G14335T C14408T A15593G C16376T C18877T A23403G G24933T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497126 MT831535
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2494/2020
 AT1- C241T C3037T C14408T C14768T C15933T G16968T T18123C T19839C C22591T T22825C A23403G G25249T G28193T GGG28881AAC C29784T C29835T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497156 MT831827
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497158 MT831704
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2526/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497159 MT831648
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2527/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497161 MT831568
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2529/2020
 ATTAAAG1- C241T T833C C1059T C3037T C6548T C7860T C14408T T17108A G22592T T22921C A23403G G25537A G25563T C26058T C26822T C27964T G29527A G29734A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497162 MT831534
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2530/2020
 AT1- C241T T833C C1059T C3037T C6548T C7860T C14408T T17108A G20033T G21985T G22592T A23403G G25537A G25563T C26822T C27964T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497173 MT831650
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2541/2020
 AT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497174 MT831678
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2542/2020
 AT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497175 MT831713
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2543/2020
 ATTAAA1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497176 MT831626
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2544/2020
 AT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497177 MT831884
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2545/2020
 AT1- C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_497179 MT831573
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2547/2020
 A1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497180 MT831558
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2548/2020
 AT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497181 MT831586
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2549/2020
 AT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497182 MT831885
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2550/2020
 A1- C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497183 MT831606
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2551/2020
 AT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497184 MT831609
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2552/2020
 AT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497185 MT831656
 2020-06-16 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2553/2020
 ATTAAAGGTTTAT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_498226
 2020-06-16 2020-07-27
 Latvia hCoV-19/Latvia/test1/2020
 A4- C241T C3037T TG13575CT C14408T A23403G C25831T GGG28881AAC

EPI_ISL_499777
 2020-06-16 2020-07-28
 United Kingdom hCoV-19/England/NORT-29338F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T A25201C C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501915
 2020-06-16 2020-07-31
 Latvia hCoV-19/Latvia/084/2020
 C241T C3037T C5183T C5822T C10456T C14408T A23403G GGG28881AAC

EPI_ISL_501922
 2020-06-16 2020-07-31
 Latvia hCoV-19/Latvia/085/2020
 C241T C3037T C5183T C5822T C14408T A23403G GGG28881AAC

EPI_ISL_507108
 2020-06-16 2020-08-03
 United Kingdom hCoV-19/England/LOND-124D56D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1440A G1857T G2891A G6463T C6781T C16466T C18568T A24178G C26681T A27669G C28453T C29364T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_508219
 2020-06-16 2020-08-04
 India hCoV-19/India/GA24/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C313T C2334T C3037T C5700A C14408T G15380T G20038T A23403G T27384C GGG28881AAC G29868A

EPI_ISL_508220
 2020-06-16 2020-08-04
 India hCoV-19/India/GA25/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C2334T C3037T C5700A C14408T G15380T G20038T A23403G T27384C GGG28881AAC G29868A

EPI_ISL_508221
 2020-06-16 2020-08-04
 India hCoV-19/India/GA26/2020
 C241T C313T C2334T C3037T C5700A C14408T G15380T G20038T A23403G T27384C GGG28881AAC G29868A

EPI_ISL_508222
 2020-06-16 2020-08-04
 India hCoV-19/India/GA27/2020
 AT1- C241T C313T C2334T C3037T C5700A C14408T G15380T G20038T A23403G T27384C GGG28881AAC G29868A

EPI_ISL_508326
 2020-06-16 2020-08-04
 India hCoV-19/India/IB48/2020
 ATTAAAGGTTTA1- C241T C3037T C8917T C8958T G11175T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508415
 2020-06-16 2020-08-04
 India hCoV-19/India/MN1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T T1947C C3037T C11355T C14408T A18702T C18877T C21648T C22444T A23403G G25563T C26305T C26735T C28139T C28854T G29868A

EPI_ISL_508720 MT834675
 2020-06-16 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10319T C14408T G16710T C16733T G20176T A23403G A25121T G25563T C27964T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508723 MT834678
 2020-06-16 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T T22843C A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509833 MT846517
 2020-06-16 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10449T C12025T C14408T C18312T T19839C A23403G C23707T G25249T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_511935
 2020-06-16 2020-08-10
 India hCoV-19/India/GA90/2020
 ATTAAAGGTTTATACCTT1- G23T C241T C313T C3037T C5700A G6443T G10465A C11671T C14408T G19348T A23403G C25413T G28371T GGG28881AAC G29734A G29868A

EPI_ISL_511966
 2020-06-16 2020-08-10
 United Kingdom hCoV-19/England/BRIS-132DA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878A C3037T A6366T C14408T C14583T G19072T C19955T G22349T A23403G T25514Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_511968
 2020-06-16 2020-08-10
 United Kingdom hCoV-19/England/BRIS-132D2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C5183T C7926T G10097A C13536T C14408T C15026T G16228A A23403G C23731T C27999A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_511972
 2020-06-16 2020-08-10
 United Kingdom hCoV-19/England/BRIS-132D85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878A C3037T A6366T C14408T C14583T G19072T G22349T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_511981
 2020-06-16 2020-08-10
 United Kingdom hCoV-19/England/BRIS-132D67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878A C3037T A6366T C14408T C14583T G19072T G22349T A23403G T25422A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512144
 2020-06-16 2020-08-10
 United States hCoV-19/USA/AK-PHL522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2143T C3037T C6336T C14408T A20268G G21800T A23403G G25244T G29348T C29370G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512333
 2020-06-16 2020-08-11
 United Kingdom hCoV-19/England/CAMB-1B5889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C556T C1912T C3037T C4002T G9479T G10097A C13536T C14408T G21220T A23403G C23731T T24063C A25948G C27476T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514629 MT892976
 2020-06-16 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C14408T G18186T G20102T G20397T G20489T C22564T A23403G T23815G G25563T C25777T C29614T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_514902
 2020-06-16 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2499/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G21468T A23403G G25563T G27261T G27703T G29179T G29779T AAAAAAAAAAAA29892-

EPI_ISL_514903
 2020-06-16 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2500/2020
 A1- A4G C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T CTTCTT29854- G29862A

EPI_ISL_514904
 2020-06-16 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2501/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_514906
 2020-06-16 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2503/2020
 C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G C23758T G25563T G29179T G29779T

EPI_ISL_514908
 2020-06-16 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2505/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_514909
 2020-06-16 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2506/2020
 AT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514910
 2020-06-16 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2507/2020
 AT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514911
 2020-06-16 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2508/2020
 ATTAAAGGTT1- C241T C829T C1059T C3037T C11916T C14408T C16650T A20675T C22450T A23403G G25563T G29179T G29779T

EPI_ISL_514912
 2020-06-16 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2509/2020
 ATT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514913
 2020-06-16 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2510/2020
 A1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_514914
 2020-06-16 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2511/2020
 ATTAAAGGTTTATACC1- C241T C829T C1059T C3037T C11916T C14408T C16650T A20675T C21871T C22450T A23403G G25563T G29179T G29779T A29871G AAAAAAAAAAAAAAAA29888-

EPI_ISL_514916
 2020-06-16 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2513/2020
 AT1- C241T C1059T C2623T C3037T C11916T C14408T C16650T C17304T A20675T G21468T A23403G G25563T G27703T G29179T G29779T CTTCTTAGGAGAATGA29854- A29899C

EPI_ISL_514923
 2020-06-16 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2520/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C28603T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_514924
 2020-06-16 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2521/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_514926
 2020-06-16 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517999
 2020-06-16 2020-08-25
 Singapore hCoV-19/Singapore/836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4893T C6310A C6312A C13730T C19524T C23185T C23929T A24915T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518016
 2020-06-16 2020-08-25
 Singapore hCoV-19/Singapore/836_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C4893T C6310A C6312A G11083T A11228G C13730T C19524T C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_520679
 2020-06-16 2020-08-25
 United Arab Emirates hCoV-19/United Arab Emirates/L2006032095/2020
 G6271T C8782T C9700T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_522019 MT969441
 2020-06-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522023 MT969445
 2020-06-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522041 MT969463
 2020-06-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522404 MT946893
 2020-06-16 2020-08-25
 United States SARS-CoV-2/human/USA/AK-PHL543/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T T6160Y C10319T C14408T T14775Y A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_522455
 2020-06-16 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2673/2020
 ATTAAAGGTTTAT1- C241T C829T C1059T C3037T G5194T C11916T C14408T C16650T A20675T C22450T A23403G G25563T G29179T G29779T

EPI_ISL_523378
 2020-06-16 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_524047
 2020-06-16 2020-08-27
 Russia hCoV-19/Russia/SPE-RII-24810V/2020
 ATTA1- A30G C241T G1401A C3037T A6415C C14408T G15743A A23403G G27415T C28432T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_525481
 2020-06-16 2020-08-31
 Sri Lanka hCoV-19/Sri Lanka/CDR-SL7066/2020
 ATTAAAGGTTTATACCTTCCCA1- C412T C884T G1397A G8653T G11083T G14062R G16117R C19170T AA21550CT G21800T C22995G CA23082MW C23191T A25381M C25603T G26365A C26735T CA27371SW TGGAGA27374KRKMKG GAT27382CTC GC27882SY T28688C C28830T G29742T A29767T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_525841
 2020-06-16 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_525842
 2020-06-16 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0548/2020
 ATTAAAGG1- C241T C3037T C8818T C14408T C15952T C20951T G20980A A23403G

EPI_ISL_525867
 2020-06-16 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0646/2020
 AT1- C241T C3037T C8818T C14408T C15952T G20980A A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_525868
 2020-06-16 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10755T C11916T C14408T C14599T A23403G C25466T G25563T G28027T G29742T

EPI_ISL_525869
 2020-06-16 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0648/2020
 A1- C241T C3037T A5706G C8818T A12579G C14408T C15952T G20980A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525870
 2020-06-16 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5706G C8818T A12579G C14408T C15952T G20980A A23403G

EPI_ISL_525874
 2020-06-16 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10755T C11916T C14408T C14599T A23403G C25466T G25563T G28027T G29742T

EPI_ISL_525876
 2020-06-16 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10755T C11916T C14408T C14599T A23403G C25466T G25563T G28027T G29742T

EPI_ISL_527914
 2020-06-16 2020-09-05
 Nigeria hCoV-19/Nigeria/OY633-CV189/2020
 ATTAAAG1- G61T C241T G3004T C3037T T11638C C14408T T15855C A16006G A23403G C23589T GGG28881AAC C29708T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_529071
 2020-06-16 2020-09-10
 Peru hCoV-19/Peru/LIM-UPCH-0014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A G11083T C13536T C14408T T16155C T16590C A22330T A23403G C23731T GGG28881AAC C29409T GTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29690-

EPI_ISL_529075
 2020-06-16 2020-09-10
 Peru hCoV-19/Peru/LIM-UPCH-0038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C4002T C7101T G10097A C13536T C14408T C17304T A23403G C23731T C24034T G27478T GGG28881AAC G29179T AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_529079
 2020-06-16 2020-09-10
 Peru hCoV-19/Peru/CAL-UPCH-0044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C2416T C3037T C14408T G15380T G20578T C21302A A22495C A23403G G25563T C28054T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_533226
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5EF1C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2299T C3037T G3955T TCAAATTCG6329- C14408T C21859T A23403G C24023T T25663C C25731T C26936T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533227
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5F03D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2299T C3037T G3955T TCAAATTCG6329- C14408T C17339T A23403G C23655T T25663C C26936T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533233
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5F0280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6636T C14408T C17288T C20775T C21622T A23403G T24835C C25587T C27046T C28344A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533235
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5F2716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3646T C4158T C6145T G8179T C14408T C18877T C21697T C23124G A23403G G25135T G25563T C27874T G28202A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533238
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5EDFDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9848G G10097A A10957G C14318T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533239
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5F0AC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2560G C3037T G9479T G10097A C14408T A19946G A23403G C23731T G24193C G28178T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533243
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5EF59A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4741C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533244
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-5EE926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T A1588G C3037T C7279T C14408T A23403G C25658T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533246
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5ED3ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14120T C14408T A23403G C23731T C28045T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533249
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5EF47F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7006T G7936C T12145G C14408T C15960T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533253
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5F1920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7766R C8809Y C9491T C14408T C22624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533255
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5EE434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C10078T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533257
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5F0420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G11083T C14408T G18651T A23403G C23731T T24763C G25757T C28093T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533259
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5F1665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A489G C3037T T5465C G6387A C12623T C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533264
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5EF9E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533273
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E819D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7878C G10097A C14408T T16348C C21575T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533296
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5EAC7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4741C C14408T C16887T G17592T C21648Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533299
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E9A19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A12075G C12153T G12223T C13862T C14408T C19186T C21618A A23403G C27350A C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533300
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E62AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C4158T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533301
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5EC4BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2560G C3037T C3162A G9479T G10097A C14408T A19946G A23403G C23731T G24193C G28178T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533314
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E751A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1442C C3037T C14408T G18674A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533315
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E8D20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T C19488T A23403G G23611T C27791T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533318
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E7B72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C9603T C12008Y C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533320
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5EB58F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7936C T12145G C14408T C14925Y C15960T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533322
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E8CD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6309T G10097A G11083T C14408T G18651T C20759T A23403G C23731T T24763C G25471T G25757T C28093T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533324
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E9114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T C19488T A23403G G23611T C27791T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533326
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E5D32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10833T C14408T T15723C C19374T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533337
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5EA5EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533341
 2020-06-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5EA18C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1442C C3037T C14408T G18674A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535696 MW001916
 2020-06-16 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4724/2020
 C241T C3037T C14408T A20268G A23403G T24076C G28436T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535699 MW001919
 2020-06-16 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4728/2020
 C241T C3037T G7393T C14408T A20268G A23403G T24076C C27804T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535701 MW001674
 2020-06-16 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4730/2020
 C241T T1877C C3037T C11074T C14408T A20268G T22342C A23403G T24076C C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535702 MW001921
 2020-06-16 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4731/2020
 C241T T1877C C3037T C11074T C14408T A20268G A23403G T24076C C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535703 MW001692
 2020-06-16 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4733/2020
 C241T C1912T C3037T C14408T G17334T A20268G A23403G T24076C C24809T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535704 MW001922
 2020-06-16 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4735/2020
 CG241TT C583T C3037T G7160A A10323G C14408T A20268G A23403G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535705 MW001923
 2020-06-16 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4739/2020
 C241T C3037T G4285T C14408T C16915T G16945A C17436T A20268G A23403G T24076C G28690T C28854T G29384K AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535706 MW001693
 2020-06-16 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4740/2020
 C241T C3037T C6196T C14408T T15432C A20268G A23403G T24076C C28290T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535707 MW001924
 2020-06-16 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4745/2020
 C241T A949G G1820A C3037T C4276T C7173T C9988T G11243T C14408T A20268G A20503G C21575Y A23403G T24076C C28498T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535708 MW001675
 2020-06-16 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4746/2020
 C241T C1288T C3037T C4698T C11575T C14408T A20268G A23403G G25690T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_539840 MW020077
 2020-06-16 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A17258C T19527C A21404G A23403G G25563T C27964T G28027C C28099T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_540927
 2020-06-16 2020-09-22
 Peru hCoV-19/Peru/CAL-UPCH-0026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C4002T C4327T G10097A C13138T C13536T C14408T A21131G A23403G C23731T C27213T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_540967
 2020-06-16 2020-09-22
 Peru hCoV-19/Peru/CAL-UPCH-0089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C3330T C4002T G10097A T10849C G12152T C13536T C14408T C19164T A23403G C23731T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540975
 2020-06-16 2020-09-22
 Peru hCoV-19/Peru/CAL-UPCH-0097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- G219T C241T C900T C3037T C4002T T7465A G10097A C13536T C14408T A23403G C23731T G27478T GGG28881AAC G29179T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540978
 2020-06-16 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C4002T G10097A C13536T C14408T A17409G A23403G C23731T G24794T A28356G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_540983
 2020-06-16 2020-09-22
 Peru hCoV-19/Peru/ANC-UPCH-0105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T T1753C C3037T C4002T G10097A A10323G C13536T C14408T G15906T A23403G C23731T GGG28881AAC G29072T G29179T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540984
 2020-06-16 2020-09-22
 Peru hCoV-19/Peru/ANC-UPCH-0106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A A10323G C13536T C14408T A17148T A23403G C23731T GGG28881AAC G29179T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_542021
 2020-06-16 2020-09-23
 United States hCoV-19/USA/NMDOH-2020132668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C8782T C10408T T10921C C17747T A17858G C18060T C23280T T28144C G29868A C29870A

EPI_ISL_543116
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3619T C14408T C17678T T18111C A23403G C23683T G24812T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543126
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543133
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1238T T1936C C3037T C13487T C14408T C16260T T20331C C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543138
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T C4931A G9479T C14408T C17119A C18508T C19206T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543142
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T582C C1059T C3037T C10319T C12374T C14408T C15763T C20031T A23403G G25563T G26763T C27964T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543144
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3117T C10319T C11575T C14408T A18468C C19032T C19118T A20262G G21305A C23086T A23403G G25563T C27944T C27964T C28868T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543145
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3117T C10319T C11575T C14408T A18468C C19032T C19118T A20262G G21305A C23086T A23403G G25563T C27944T C27964T C28868T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543146
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4890T C5055T C14408T T20769C C22444T G23224T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543157
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T T18173C A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543159
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T C14408T G19069T A23403G T23443C G28179C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543160
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543161
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C6568T C14408T C16017T G16853T A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543164
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10626T C14408T C17639T A23403G G25354T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543165
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1158A C3037T C14408T T18843C C19011T A23403G G24770T G25970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543166
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5144T C5654T C11620T C12525T C14408T C18877T C20480T A23403G G25563T G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543169
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C11979A C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543223
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543252
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C A5431G C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543259
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4090T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543264
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6099T C10319T C14408T G14829T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543266
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11246C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543267
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T G18745A A23403G C24718A C26606T G26690T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543270
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10626T C14408T C17639T A23403G C28744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543271
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543275
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1836T C3037T A10323G C14408T T15276A A23403G G25563T G27396T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543276
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543277
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3914/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543278
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6896T C10319T C14408T C16308T C16694T A23403G T25510C G25563T A25986T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543280
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T C2445T C3037T G12052T C14408T C19524T T21640C A23403G GGG28881AAC G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543281
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2228C C3037T C14408T C16163T G22014A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543282
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14870G C23185T A23403G G28179C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543285
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-3926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T A18730G C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543293
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-4010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9166T C14408T C19011T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543294
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-4011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T G7798T T11134C C14408T G18412T A18535G C19011T T23245G A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543298
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-4016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T G3483T T9742C C14408T C17639T C21855T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543301
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-4019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6283C C14408T C18129T C19718T C20368T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543303
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-4021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1545T C1884T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543304
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-4022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G248T C335T C1059T C3037T C9120T A12197C C14408T C15720T T16425G G17019T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543306
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-4024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T G4160T T9742C C14408T C17639T C18501T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543308
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-4028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2102T C3037T A4480G C6606T C10188T G12332T C14408T A23403G T24982C G25563T C27964T T28981C G29392T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543314
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-4034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24357T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543641
 2020-06-16 2020-09-23
 United States hCoV-19/USA/TX-HMH-4464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4579A C10645T C14408T C14585T C22313T A23403G G25563T C26977G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547575
 2020-06-16 2020-09-24
 Brazil hCoV-19/Brazil/SP-356/2020
 ATTAAAGGTTTATACCTTCCCAG1- GT24CG C241T C2450T C3037T C12053T C14408T G18122T A20294T C21575T A23403G G25088T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_553346
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95D26F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553355
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CF2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T G2782T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553372
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C87D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8479G C14408T G20931A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553380
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553386
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95D28D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T G8371T G11083T C14408T C17746T G19962T C22477T A23403G G25563T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553435
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C88C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T C14408T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553463
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D4A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553504
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CF4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553515
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A3F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553516
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CF1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553522
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D4B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G24815C A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553531
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95D241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553536
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D4C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553604
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CBFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12145G C14408T C19367T C20759T C21676T A23403G G27281T C28725T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553616
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G G28347A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553625
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CC08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13342T C14408T A23403G G25489T T27264G C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553807
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9540E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10513C C14408T T16742G C21658T A23403G T27851C C27911T GGG28881AAC C29085T C29541T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554101
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-9573EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T G15910T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554515
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950B25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T T5507A C11074T G11083T C14408T A20268G G21010A C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554862
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CE6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554872
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554873
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CD41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T C16222Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554874
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CE02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T G18055A C18828T A23403G GGG28881AAC G29227A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554879
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E86F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554880
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CE20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554888
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C79E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554895
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554899
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CD50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GGG28881AAC C29203T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554900
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G G27364T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554903
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95ABB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10513C C14408T T16742G C21658T A23403G T27851C C27911T GGG28881AAC C29085T G29348T C29541T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554922
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G17049T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554925
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C7AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T G15006T A23403G C23731T G28380T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554953
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554972
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-95C2CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T G11083T C14408T A23403G GGG28881AAC G29825A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554976
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94D781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T G11083T C14408T A23403G GGG28881AAC G29825A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554977
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CD14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2189Y C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554991
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CE11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1214A C1762T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC C29733T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554992
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CDE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C G18907T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554993
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94D790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T G11083T C13721T C14408T A23403G GGG28881AAC G29825A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554999
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CD05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555004
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CE5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C934T C3037T A3342G G10201K C14408T C20320T A20475G A23403G C25626T C27684T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555007
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T A8031G C8836T G10097A C13536T C14408T A23403G C23731T C25276T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555015
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CD23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555025
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4084T G5716A C6568T C6628T C7528T C8139T C9298T A10286G C14408T C18744T C19524T A22116G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555048
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C7528T C11124T C14408T C15848T G19254T T19893C A23403G C25889T T28143Y AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555054
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3153A A9433T G10265A C14408T C19140T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555057
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4084T G5716A C6568T C6628T C7528T C8139T C9298T A10286G C14408T C18744T C19524T A22116G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555069
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820R C3037T C6990Y G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555074
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C2F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4596T C5221Y T11915G A11992T C12100A C14408T G23120T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555090
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C2D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9693T G10097A C14120T C14408T A23403G C23731T C28045T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555092
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CD6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T C16222T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555103
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94D7AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C5724T C14408T T15047C C20984T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555115
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D8AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G G25598T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555124
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CD32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555126
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CDF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555131
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F9E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T G11083T C14408T A16638G T22228G A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555132
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F87D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G23611K A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555133
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FEB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623C C3037T C4577T A5582R T7009A C14408T A23403G C27046T C27143T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555134
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G A23403G G24764A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555135
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FA0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G C26150T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555141
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9504DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10884G C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555149
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-9502E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T G11083T C14408T A23403G GGG28881AAC G29825A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555151
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-9503B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555166
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C162T C241T C3037T C6606Y C14408T C16289T A23403G C25046Y G25429T C26681T C28253Y A29385G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555167
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FE20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T G10097A C14408T A19946G A23403G C23731T G24193C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555170
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FE7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2675T C3037T C6681T C7162T C14408T G15438T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555174
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555176
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FA77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C12651T C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555183
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FE4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G491T C3037T C3787T A3915C C13620T C14408T G17019T A23403G G25314R C27625T G28242T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555184
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9503C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555191
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-9503D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C9438T C14408T A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555198
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FC08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC C25936T C28171T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555199
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9504A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G23611T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555202
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FC35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555212
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FE5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A C8660T T9322C C10626T A10948G G12917A C14408T T21568A G22316A A23403G C26010T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555218
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9502D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8644C C14408T A17943G G18961A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555222
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C3817T C14408T A23403G A25347G G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555224
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FCBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3566A A10479G C13860T C14408T A23403G G26849T GGG28881AAC A28911T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555225
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G T27264G C28093T GGG28881AAC G29543A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555226
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F9B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C6040T G11083T C14408T G19879A A20268G A23403G G28378T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555229
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FA86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7712T G10097A T13216G C14408T G15957A A23403G C23731T G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555230
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FB74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555234
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FE6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C14408T G15438T A20268G A23403G T23797G C24026T C25904T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555238
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9503E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1800A G2035T C3037T T10257C C14408T A23403G C23854T G25972A G27842T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555239
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FD8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1415T C3037T C14408T T22981C A23403G C26681Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555241
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FCDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3551T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555245
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FB47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G C25553T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555246
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FBB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T G11083T C14408T A16638G T22228G A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555254
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F95C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1692C C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555256
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9504EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555257
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FA1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555258
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FC80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13458Y C14408T G18169A A23403G C26606T C28290T G29717A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555260
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F85F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G23611T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555265
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FB92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A A8995G C14408T C18788T T19839C C23230T A23403G -25700CCC C28171T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555270
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-9503F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555272
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F9D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555280
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FC9F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555282
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FC17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555286
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13608Y C14408T C21637T A23403G G23611T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555289
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FBFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G C25553T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555290
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FB83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C10507Y C14408T C18788T T19839C C23230T A23403G -25700CCC C28171T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555291
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9502F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C2040T C3037T C14408T A23403G C25276T G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555293
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FF69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2110T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555297
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FB65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13677T C14408T A23403G T25451C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555299
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94FF78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555301
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FD05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555302
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FE99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T C5654Y G5716T T10453C C11195T C14408T G14428T A16941R A23403G C25658Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555308
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FBCF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G C25553T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555310
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9502C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13827C A14328T C14408T G18756T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555323
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E0A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4528R G11083T C14408T A23403G G25471T C27005T GGG28881AAC T29619C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555330
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E8AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T G15006T A23403G C23731T G28380T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555336
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E0B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555366
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952B23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9634T G11083T C14408T A23403G C27263T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555373
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94DFB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555384
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E89C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A A12928G C14408T A19650G C23127Y A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_555392
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94E568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C775T C3037T C9438T C14408T G21160A A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555393
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DF6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C19454T T23255C A23403G A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555402
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E0EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C14396T C14408T A23403G G25429T C27434Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555405
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E4D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C13255Y C13329T C14408T G16741T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555415
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E51D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10202T A11782G C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555438
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94E6B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C5730T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555441
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T C3037T C8683T C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555443
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T C3037T C8683T C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555457
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E53B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T A6867C G8353A C8950T G10097A C13536T C14408T C16915T A23403G C23731T GGG28881AAC G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555478
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E8D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8179T A9433T G10265A C14408T C15935T G17944T C19140T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555491
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E8C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555498
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555527
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95B155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555566
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DF98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15738T T18260C A20712G C21110T A23403G G25429T C25611T T26418C C29025T C29585T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555601
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DF7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13482G C14408T G17331T C18877T C22444T A23403G G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555628
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AEB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555680
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AD43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T C29530M A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555765
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94FEE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C12473T C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555768
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F8AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555772
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F7AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555774
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94BBA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555777
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FAC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555779
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F7BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10737G C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555791
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FEC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555801
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FAB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9207T G11083T C14408T A21323G A23403G A27424G G27841T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555803
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F8C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6428T C6681T C7162T G8102T C10626T C14408T G15438T C19164T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555808
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F7DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G C28453Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555810
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FF0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T G21518T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555812
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F8B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C19454T T23255C A23403G A28065C T28738C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555816
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F89B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555820
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FF1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1387T C3037T C14408T C18714T C22564A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555839
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C8DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555840
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CA89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555850
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A22359G A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555866
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C3E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4352A C4391A C11095T G14202T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555880
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CA98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T G21518T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555885
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C2721Y C3037T T7357C C14408T A23403G G23868T C24771Y GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555909
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CC29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C10789Y C13536T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555914
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CB77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T A20055G A23403G C23731T G25947T T28723C GGG28881AAC G29315C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555918
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C8CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C18568T A19650G C21789T A23403G C26037Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555925
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C8BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555952
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C96E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G677R C3037T A11279C T14331C C14408T A15278G A23403G C25350T G25429K G26769R G28487A C29535T G29764T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555966
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D11A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13111C C14408T C15237T A23403G G25784T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555974
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CFC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556013
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C8AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1214A C3037T A9433T G10265A C14408T A19650G A23403G G25352T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556034
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CFA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1800A G2035T C3037T T10257C C14408T A23403G C23854T G25972A G27842T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556042
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CAA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T G21518T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556044
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C8F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556054
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C5F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556059
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C5E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556073
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CFD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5822T C6681T C6896A C7162T C14408T G15438T G19723T A20268G A23403G C24026T G28690T C28866T G29737T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556256
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EB48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G A23403G G24764A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556307
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D2F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556326
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94ED33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4741C C14408T C16887T G17592T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556399
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EFA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A C14408T A19650G G21538A A23403G G26257R C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556443
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D0A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T G8371T G11083T C14408T C17746T G19962T C22477T A23403G G25563T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556451
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EF88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T A2641G C3037T C3622T C12073T C14408T C14676T T20989C A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556496
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EE9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6582T A10479G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556501
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94F039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9438T C14408T A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558636
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A0656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C1915T C3037T G6476T C8140T G10097A G11083T T13216G C14408T C18606T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558637
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A3F58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T G15910T C19269T A23403G C27964T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558777
 2020-06-16 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A47F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1188T C3037T A4801G G7675T T8908C C14408T G14547T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560319
 2020-06-16 2020-09-28
 India hCoV-19/India/UT-IMT-AN32/2020
 C241T T1947Y C3037T C13989T C14408T C18877T C22444T A23403G C25047T G25563T C26735T C28854T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_566077
 2020-06-16 2020-10-01
 Russia hCoV-19/Russia/MOW-RII-MH249S/2020
 ATTA1- C241T C1780T C3037T C6120T C14408T C21292A C22458T A23403G G25244T C26681T C27434T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

MT731662
 2020-06-16 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_186/2020
 C241T C683T C2836T C3037T T3836A G4504T C14408T C14708T C18877T C22444T C23114A A23403G G25563T C26735T C28854T

MT740383
 2020-06-16 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_188/2020
 C241T A1163T C3037T C14408T G20580T A23403G G26720T GGG28881AAC

MT811520
 2020-06-16 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1088-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T T14910C A16052G A20268G A23403G T24076C GG25690TT C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT940482
 2020-06-16 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT940484
 2020-06-16 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT940486
 2020-06-16 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10440T C10834T C14408T C23127T A23403G G25563T C28887T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT940487
 2020-06-16 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T G29543T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT940488
 2020-06-16 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT940489
 2020-06-16 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT940491
 2020-06-16 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT940492
 2020-06-16 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT940494
 2020-06-16 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C6120T C10834T G11083T C14408T C23127T A23403G G25563T C28887T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT940496
 2020-06-16 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T G29179T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT940500
 2020-06-16 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT940501
 2020-06-16 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT940502
 2020-06-16 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10440T C10834T C14408T C23127T A23403G G25563T C28887T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT940505
 2020-06-16 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14265T C14408T C23127T A23403G G25563T C28887T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_469050
 2020-06-17 2020-06-17
 Italy hCoV-19/Italy/IZSPB_990/2020
 A1CCGCGCGA C241T TGGTCATGTTATGGT508- C3037T C14408T T15978C A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_469116
 2020-06-17 2020-06-17
 Singapore hCoV-19/Singapore/361/2020
 C190T T2791C C6310A C6312A G11083T C13730T C18928Y C19524T C23185T C23929T C28311T T28829C AAAAAAAAAAAA29892-

EPI_ISL_477015
 2020-06-17 2020-06-28
 Ecuador hCoV-19/Ecuador/USFQ-096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12880T C14408T A23403G G25563T G29553A ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_477016
 2020-06-17 2020-06-28
 Ecuador hCoV-19/Ecuador/USFQ-097/2020
 C241T C3037T C8025T A11983G C14408T A20268G A23403G G29734C

EPI_ISL_477138
 2020-06-17 2020-06-28
 Bangladesh hCoV-19/Bangladesh/CHRF_0029/2020
 ATTAAAGGTTTATACCTTC1- C241T A1163T A2026W C3037T C14408T G21809K A23403G G25352S C26549T C26645T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867W

EPI_ISL_477239
 2020-06-17 2020-06-29
 India hCoV-19/India/InStem_NCBS_0038/2020
 ATTAA1- GTT8ACG A12G A14G CT16TC C19T AGG22GATCT C241T C3037T G3514T C5812T C10582T G11521C C14408T C18877T G22094A C22444T A23403G G25563T C26735T C28854T

EPI_ISL_477241
 2020-06-17 2020-06-29
 India hCoV-19/India/InStem_NCBS_0040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC

EPI_ISL_477242
 2020-06-17 2020-06-29
 India hCoV-19/India/InStem_NCBS_0041/2020
 AT28881GGAG AA4TC GTT8ACG A12G A14G CT16TC C19T AGG22GATCT C241T C302T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC ATGA29866GCTG AA29871CT A29874T AAA29876TGG A29881G AAAAA29883GCCCT AAAAA29890TGTGT AA29899TT A29903TTTTAGTAGTGCTATCCCCATGTGATTTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

EPI_ISL_477809
 2020-06-17 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B4FD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4149C CAG6501- A8031G C9474T C12525T C14408T T14643C G22661T A23403G G25599T G27659T GGG28881AAC C29353T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477810
 2020-06-17 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B4FFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2554G C2650T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C24833T C25624T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478252
 2020-06-17 2020-06-30
 United Kingdom hCoV-19/Scotland/EDB6535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20031T A23403G C27476T C28810T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478353
 2020-06-17 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D7017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T C18646T G19894A G21624T A23403G G25106C C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478355
 2020-06-17 2020-06-30
 United Kingdom hCoV-19/England/LCST-24D7035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T G10265A A11595G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478719
 2020-06-17 2020-06-30
 United Kingdom hCoV-19/England/NORW-EA52B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A139G C241T C3037T A5267W G11771A C13499Y C14408T C19220Y A23403G A23570T G26062T GGG28881AAC

EPI_ISL_480414
 2020-06-17 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_130/2020
 C241T C3037T C10252T G13812T C14408T G19723T A23403G GGG28881AAC

EPI_ISL_480443
 2020-06-17 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_125/2020
 C241T A1163T C2040T C2388T C3037T C14408T G19723T A23403G C25504G C25624T GGG28881AAC

EPI_ISL_480444
 2020-06-17 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_126/202
 C241T T1017C A1163T T2314C C2388T C3037T C4331T A12187G C14408T G16014T G19723T C22450T A23403G C25521T G25552T GGG28881AAC C29614T G29755A

EPI_ISL_480718 MT745689
 2020-06-17 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2112/2020
 C241T C3037T C14408T A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_480719 MT745690
 2020-06-17 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2113/2020
 C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_480723 MT745693
 2020-06-17 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2118/2020
 C241T A1163T C3037T T7540C G9526K C14408T C15857Y G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_482853
 2020-06-17 2020-07-06
 South Africa hCoV-19/SouthAfrica/KRISP-0266/2020
 ATTA1- C241T C3037T C14408T C19152T C23380T A23403G G25644T G25753T C27416A GGG28881AAC G29711T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_482877
 2020-06-17 2020-07-06
 Senegal hCoV-19/Senegal/68488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C6354T C8950T T13006C C14408T C20404T C22208T A23403G G25563T C25688T C27563T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_483525
 2020-06-17 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1098-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3369T C10626T G11743T C14408T C18657T C20825T A22105T A23403G G25166C C25528T C25603T GGG28881AAC

EPI_ISL_483526
 2020-06-17 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1100-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G252T C3037T C12488T C14408T A23403G C25528T G27084A GGG28881AAC

EPI_ISL_483527
 2020-06-17 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1101-SAN/2020
 ATTAAAGG1- C241T C3037T C10039A C14408T A20268G A23403G T24076C G26167T C28854T

EPI_ISL_483634
 2020-06-17 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_192/2020
 C241T A1163T G2585T C3037T C3961T C14408T A19008C T20592C C21575T C21846T A23403G G23608T A24970G G25907T G26230T T26903C C28006G GGG28881AAC

EPI_ISL_483635
 2020-06-17 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_193/2020
 C241T A1163T C3037T A8026G C9502T G11083T C11653T C14408T A23403G C26895T GGG28881AAC

EPI_ISL_483695
 2020-06-17 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_190/2020
 C241T C2469T C2638T C3037T C8655T C14408T A23403G G23522C C25844T GGG28881AAC

EPI_ISL_484343
 2020-06-17 2020-07-08
 United Kingdom hCoV-19/England/NOTT-112116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C14408T A23403G T27264G C28093T GGG28881AAC G29543A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484807 MT750020
 2020-06-17 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484811 MT750024
 2020-06-17 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484815 MT750028
 2020-06-17 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G17722T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484821 MT750033
 2020-06-17 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2232T C2939T C3037T T4946G C7104T C12025T C14408T T19839C A23403G C23707T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484823 MT750035
 2020-06-17 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5310T C12294T C14408T A23403G C25511T G25563T CGGAGT29743- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484825 MT750037
 2020-06-17 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484828 MT750040
 2020-06-17 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484834 MT750044
 2020-06-17 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T A696C C3037T G3871T T3931C C6906T A8390G C12823T C14408T C22033A A23403G G24926T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484835 MT750045
 2020-06-17 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T T22657C A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484846 MT750056
 2020-06-17 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T G7865A C14408T C14838T C16887T A21043G A23403G C25587A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484847 MT750057
 2020-06-17 2020-07-08
 United States SARS-CoV-2/human/USA/IL-UW-472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484858 MT750067
 2020-06-17 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486509 LR860630
 2020-06-17 2020-07-10
 Switzerland hCoV-19/Switzerland/160015_446_G07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G942R A1071R C3037T C3747Y C4002T G5138K G5950K T7061Y C9951Y G9999R G10004K C10032Y T10084Y G10097R C10148S C12756Y C13536T C14408T T17486Y G17575R A17655R G17667K G19732T G20275K A20379W A20399R A20440W T21527Y C21638Y T21653Y T22354Y A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486853
 2020-06-17 2020-07-11
 India hCoV-19/India/UN2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G124A C241T C313T C3037T C5700A C9693T C10815T C14408T C16626T A23403G C25587G C26527T C26542T GGG28881AAC G29474T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_487271 MT745694
 2020-06-17 2020-07-12
 Australia SARS-CoV-2/human/AUS/VIC2119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6840T C14408T G15679A C18877T TAT22189- C22444T A23403G G25563T C26735T C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_487422
 2020-06-17 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-32/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487423
 2020-06-17 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-33/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487424
 2020-06-17 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-34/2020
 C241T C1059T A1925C C3037T C5796T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_487425
 2020-06-17 2020-07-14
 Germany hCoV-19/Germany/NRW-MPP-35/2020
 C241T C1059T C3037T C6406T C14408T G18972A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489857 EPI_ISL_491053
 2020-06-17 2020-07-14
 Romania hCoV-19/Romania/ROSV_13429/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2140G C3037T T9697C C11866T C14408T A20268G A23403G T29726- A29827T G29830T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_489909
 2020-06-17 2020-07-14
 United States hCoV-19/USA/WI-GMF-06776/2020
 A1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489910
 2020-06-17 2020-07-14
 United States hCoV-19/USA/WI-GMF-06787/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489911
 2020-06-17 2020-07-14
 United States hCoV-19/USA/WI-GMF-06792/2020
 ATTAAAGGTTTATACCT1- C241T C715T C1059T C2401T C3037T G4255A C11916T C14408T G16957T C18086T C18555T AA21550MW C22088T T22981C A23403G A23586G G25563T C27845T T29029C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489958
 2020-06-17 2020-07-14
 United States hCoV-19/USA/WI-GMF-M00012/2020
 ATTAAAGGTTTATACCTTC1- C241T C715T C1059T C1473T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490407
 2020-06-17 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A41CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1724G C3037T C14408T A23403G GGG28881AAC TTCACCGAGGCCACGCGGAGTACGATCGAGTGTA29728- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490408
 2020-06-17 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A41DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3228G AAC3632- C6633T C14408T G17014T A23403G C23481T C25777T C26947T G27746T C28725T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490409
 2020-06-17 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A41ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3228G AAC3632- C6633T C6926T C14408T G17014T A23403G C23481T C25777T C26947T G27746T C28725T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490410
 2020-06-17 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A4235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490412
 2020-06-17 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A42F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8644C C14408T A17943G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490420
 2020-06-17 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A43AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T C3037T C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490770
 2020-06-17 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165B43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C775T C3037T C9438T C14408T G21160R A23403G T26248C GGG28881AAC G29777T

EPI_ISL_490820
 2020-06-17 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165F92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8944C C14408T C14741T A23403G A28294C

EPI_ISL_490866
 2020-06-17 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-16633B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24173T G24586T C25275T G25552T GGG28881AAC T29607C

EPI_ISL_495070 MT800282
 2020-06-17 2020-07-22
 India SARS-CoV-2/human/IND/GBRC314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T A9737G C14408T A23403G T27495A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495071 MT800047
 2020-06-17 2020-07-22
 India SARS-CoV-2/human/IND/GBRC315a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T7185C C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495072 MT800041
 2020-06-17 2020-07-22
 India SARS-CoV-2/human/IND/GBRC315b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C18877T T21616C G21795T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495073 MT800036
 2020-06-17 2020-07-22
 India SARS-CoV-2/human/IND/GBRC316a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C12616T C14408T C18877T G21795T A23403G G25563T TTA26159- TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_495074 MT800031
 2020-06-17 2020-07-22
 India SARS-CoV-2/human/IND/GBRC316b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14408T G16975T A23403G TTA26159- C26735T G26951T G27933T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_495075 MT800021
 2020-06-17 2020-07-22
 India SARS-CoV-2/human/IND/GBRC318a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A10761G C14408T A23403G G25595T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495076 MT800015
 2020-06-17 2020-07-22
 India SARS-CoV-2/human/IND/GBRC318b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A10761G C14408T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495077 MT800010
 2020-06-17 2020-07-22
 India SARS-CoV-2/human/IND/GBRC319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T C14790T G22468T T28144C G28878A T29023A C29614T G29742A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495078 MT800002
 2020-06-17 2020-07-22
 India SARS-CoV-2/human/IND/GBRC320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14408T A23403G G25337T C29353T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_497127 MT831635
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2495/2020
 A1- C241T C1059T C1420T C3037T G4255A G10444T C14220T C14408T G15202T A23403G G25555T G25563T G29628T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497128 MT831542
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2496/2020
 AT1- C241T C3037T A4372G A6293G C14408T C15933T G16968T C18171T G19009T T19839C A23403G G24193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_497129
 2020-06-17 2020-07-24
 United States hCoV-19/USA/WA-S2497/2020
 AT1- G1401A G2051A C8782T C16887T C17747T A17858G C18060T A19308G C20031T G23593T A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497130 MT831552
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2498/2020
 A1- C241T C3037T T8559A G8561A T10190C C10507T C14408T G15243T C19145T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_497131 MT831619
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2499/2020
 AT1- C241T C3037T C4540T A5503G C12513T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497132
 2020-06-17 2020-07-24
 United States hCoV-19/USA/WA-S2500/2020
 ATTAAAGGTTTAT1- G1401A G2051A C8782T C16887T C17747T A17858G C18060T A19308G C20031T G23593T A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497133 MT831862
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2501/2020
 AT1- C241T C3037T C6445T C14408T G16813A G16852T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497134 MT831701
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2502/2020
 AT1- C241T C3037T C14408T C15933T G16968T G18951C T19839C A23403G GGG28881AAC G29024T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497135
 2020-06-17 2020-07-24
 United States hCoV-19/USA/WA-S2503/2020
 AT1- G1401A G2051A T6853A C8782T C13035T C15045T C16887T C17747T A17858G C18060T A19308G C20031T A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497136 MT831788
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2504/2020
 AT1- C241T C3037T C6445T C14408T G16813A G16852T A23403G GGG28881AAC A29413G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497137 MT831593
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2505/2020
 A1- C241T C1059T T1927C C3037T C10319T C14408T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T G29262T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497138 MT831716
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2506/2020
 AT1- C241T C1060T C3037T T6329C C14408T T19839C A23403G G25445A C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497139 MT831720
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2507/2020
 AT1- C241T C1060T C3037T T6329C C14408T T19839C A23403G G25445A C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497140 MT831612
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2508/2020
 ATTAAAGGTTTAT1- C241T T833C C1059T C3037T C6548T C7860T C14408T T17108A G22592T A23403G G25537A G25563T C26822T C27752T C27964T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497143 MT831858
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2511/2020
 ATTAAAGGTTT1- C3037T C5020T C12897T C14408T C18086T T19839C C20970T A23403G C27371T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497144 MT831812
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2512/2020
 AT1- C241T C3037T C14408T C15240T C15933T G16968T T19839C A23403G GGG28881AAC C29762T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497145 MT831847
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2513/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497170 MT831598
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2538/2020
 ATTAAAGGTTTATACC1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497171 MT831596
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2539/2020
 AT1- C241T C3037T G3452A C3992T G4510T C8311T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497172
 2020-06-17 2020-07-24
 United States hCoV-19/USA/WA-S2540/2020
 AT1- G1401A G2051A C8782T C15045T C16887T C17747T A17858G C18060T A19308G C20031T A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497187 MT831888
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2555/2020
 ATTAAAGGTTT1- C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497189 MT831566
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2557/2020
 AT1- C241T T833C C1059T C3037T C6472T C6548T C7860T C14408T T17108A G22592T A23403G G25537A G25563T C26822T C27964T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497191 MT831894
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2559/2020
 AT1- C241T C1059T C2508T C3037T C14408T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497192
 2020-06-17 2020-07-24
 United States hCoV-19/USA/WA-S2560/2020
 A1- G1401A G2051A C8782T C16887T C17747T A17858G C18060T A19308G C20031T G23593T A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497193 MT831857
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2561/2020
 ATTAAAGG1- C241T C1441T G2305T C3037T C4582T C13860T C14408T C15960T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497194
 2020-06-17 2020-07-24
 United States hCoV-19/USA/WA-S2562/2020
 ATTAAAG1- G1401A G2051A C8782T C15045T C16887T C17747T A17858G C18060T A19308G C20031T A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497195 MT831599
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2563/2020
 AT1- C241T C3037T C6445T G11083T C14216T C14408T G16813A G16852T G19947T A20559C A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497196 MT831757
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2564/2020
 C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497205 MT831840
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2573/2020
 C241T C3037T C14408T G18803T A22606G A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_497206 MT831867
 2020-06-17 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2574/2020
 ATTAAAGGTT1- C241T C3037T C8064T C14408T G15444T G21232A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_500947 MT806104
 2020-06-17 2020-07-28
 India SARS-CoV-2/human/IND/GBRC317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T G6352T C13584T C14408T C18877T A23403G G25563T C26735T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_500948
 2020-06-17 2020-07-30
 India hCoV-19/India/GBRC321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T T6745C G7798T C14408T G14829T A18802C A23403G GTTA26158- G26951T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_500949 MT799991
 2020-06-17 2020-07-27
 India SARS-CoV-2/human/IND/GBRC322a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C8782T G14829T C18877T G22468T A23403G G26951T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_500950
 2020-06-17 2020-07-30
 India hCoV-19/India/GBRC322b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C3874T C14408T A18802C G25563T GTTA26158- GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_508207
 2020-06-17 2020-08-04
 India hCoV-19/India/GA11/2020
 ATTAAAGGTTTA1- C241T C313T C3037T C5700A G6443T A8689G G10465A G11335T C14408T G19348T A20236G A23403G C25413T G28371T GGG28881AAC G29734A G29868A

EPI_ISL_508208
 2020-06-17 2020-08-04
 India hCoV-19/India/GA12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C313T G1264A C2395A C3037T C5700A G10465A A13498G C14408T A23403G GGG28881AAC G29734A G29868A

EPI_ISL_508209
 2020-06-17 2020-08-04
 India hCoV-19/India/GA13/2020
 AT1- C241T C313T C3037T C5700A C8480T G10465A C14408T C18457T A23403G G25690T GGG28881AAC G29868A

EPI_ISL_508210
 2020-06-17 2020-08-04
 India hCoV-19/India/GA14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C5700A C8480T G10465A C14408T A23403G G25690T GGG28881AAC G29868A

EPI_ISL_508211
 2020-06-17 2020-08-04
 India hCoV-19/India/GA15/2020
 ATTA1- C241T C313T C3037T C5700A C14408T C21648T G22104C A23403G G27915A GGG28881AAC C29754T G29868A

EPI_ISL_508212
 2020-06-17 2020-08-04
 India hCoV-19/India/GA16/2020
 AT1- C241T C313T C3037T C5700A C9907T G10465A C14408T C16575T A23403G G24095T C25714T GGG28881AAC G29868A

EPI_ISL_508213
 2020-06-17 2020-08-04
 India hCoV-19/India/GA17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C2453T C3037T C5700A G10465A G10870T C14408T G20663T A23403G G23608T GGG28881AAC G29868A

EPI_ISL_508214
 2020-06-17 2020-08-04
 India hCoV-19/India/GA19/2020
 ATTAAAGGTT1- C241T C313T C3037T C5700A A7066G G10465A C14408T C15654T A23403G C25714A GGG28881AAC G29868A

EPI_ISL_508215
 2020-06-17 2020-08-04
 India hCoV-19/India/GA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C313T C3037T C5700A G10465A C14408T A23403G A27533T GGG28881AAC G29868A

EPI_ISL_508216
 2020-06-17 2020-08-04
 India hCoV-19/India/GA20/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C28G C241T C313T C3037T C5700A G10465A C14408T A23403G GGG28881AAC C29284T G29734A G29868A

EPI_ISL_508217
 2020-06-17 2020-08-04
 India hCoV-19/India/GA21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C313T C3037T C5700A C11074T C14408T G20134T C21648T A23403G GGG28881AAC G29868A

EPI_ISL_508218
 2020-06-17 2020-08-04
 India hCoV-19/India/GA22/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C920T C3037T C5512T C5700A C10349T C14408T A23403G G25455T GGG28881AAC G29868A

EPI_ISL_508223
 2020-06-17 2020-08-04
 India hCoV-19/India/GA28/2020
 A1- A4G C241T C313T C3037T C5700A G10465A C14408T C16887T A23403G GGG28881AAC G29755T G29868A

EPI_ISL_508224
 2020-06-17 2020-08-04
 India hCoV-19/India/GA29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C313T C3037T C5700A A11947G C12225T C14408T C21648T G21974T A23403G G23909T T24295C GGG28881AAC G29868A

EPI_ISL_508234
 2020-06-17 2020-08-04
 India hCoV-19/India/GA4/2020
 AT1- C241T C313T C3037T C5700A G10465A C13944T C14408T G15327T G21316A A23403G C23635T G24348T GGG28881AAC G29734A G29868A

EPI_ISL_508244
 2020-06-17 2020-08-04
 India hCoV-19/India/GA5/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C313T C346T C3037T C5700A C14408T C19011T A23403G C28076T GGG28881AAC G29868A

EPI_ISL_508254
 2020-06-17 2020-08-04
 India hCoV-19/India/GA6/2020
 A4- T10G C241T C313T C3037T C5700A T7185C C10369T G10465A C14408T G20730T A23403G GGG28881AAC G29734A G29868A

EPI_ISL_508264
 2020-06-17 2020-08-04
 India hCoV-19/India/GA7/2020
 ATTAAAGGTTTATACCTTCC1- G23T C241T C313T C3037T C5700A G10465A C13821T C14408T A23403G G28077T GGG28881AAC G29734A G29759T G29868A

EPI_ISL_508274
 2020-06-17 2020-08-04
 India hCoV-19/India/GA8/2020
 AT1- C241T C313T C3037T C5700A C8480T G10465A C14408T A23403G G25690T GGG28881AAC G29868A

EPI_ISL_508284
 2020-06-17 2020-08-04
 India hCoV-19/India/GA9/2020
 ATTAAAGGTT1- C241T C313T C3037T C5700A C14408T C19011T A23403G GGG28881AAC G29868A

EPI_ISL_508285
 2020-06-17 2020-08-04
 India hCoV-19/India/GA93/2020
 ATTAAAGG1- T11G C241T C313T C3037T C5700A C8123A G12243A C14408T T20218G C21648T G22104C A23403G G23593T A27809T GGG28881AAC G29868A

EPI_ISL_508286
 2020-06-17 2020-08-04
 India hCoV-19/India/GA98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C313T C3037T C5700A C8480T G10465A C14408T A23403G G25690T GGG28881AAC G29868A

EPI_ISL_508289
 2020-06-17 2020-08-04
 India hCoV-19/India/IB11/2020
 ATTAAAG1- C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508297
 2020-06-17 2020-08-04
 India hCoV-19/India/IB19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1218T C3037T C8917T C14408T A23403G C24134T C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508299
 2020-06-17 2020-08-04
 India hCoV-19/India/IB21/2020
 ATT1- C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508304
 2020-06-17 2020-08-04
 India hCoV-19/India/IB26/2020
 ATTA1- T9G C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508307
 2020-06-17 2020-08-04
 India hCoV-19/India/IB29/2020
 ATTAAAGGTTTATACCTTCCCA1- A26T C241T C3037T C8917T C14408T G22113T A23403G GGG28881AAC G28960T G29868A

EPI_ISL_508308
 2020-06-17 2020-08-04
 India hCoV-19/India/IB3/2020
 ATTAAAG1- C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC

EPI_ISL_508317
 2020-06-17 2020-08-04
 India hCoV-19/India/IB39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1218T C3037T C8917T C14408T C21736T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508318
 2020-06-17 2020-08-04
 India hCoV-19/India/IB4/2020
 ATTAAAGGT1- C241T C1218T C3037T A5141G C8917T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508322
 2020-06-17 2020-08-04
 India hCoV-19/India/IB43/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1218T C3037T C8917T C14408T C21736T A23403G C27110T T27384C GGG28881AAC

EPI_ISL_508335
 2020-06-17 2020-08-04
 India hCoV-19/India/IB7/2020
 ATTA1- C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C A28761T GGG28881AAC G29868A

EPI_ISL_508490
 2020-06-17 2020-08-04
 India hCoV-19/India/TF10/2020
 A1- C66A C241T C676T C2485T C3037T C5884T C12672T C14408T A23403G T23470C C26060T C28256A GGG28881AAC G29868A

EPI_ISL_508491
 2020-06-17 2020-08-04
 India hCoV-19/India/TF12/2020
 T63C C241T T1947C C3037T G6446T C12534T C14408T C18877T C22444T A23403G T25556G G25563T C26735T C28854T T29524A G29868A

EPI_ISL_508492
 2020-06-17 2020-08-04
 India hCoV-19/India/TF13/2020
 ATTAAAGGTTTATACCTTCC1- C241T C629T C1627T T1947C C3037T C14408T G17592T C18576T C18877T C22444T A23403G C24418T G25563T C26735T C28854T G29212T G29868A

EPI_ISL_508493
 2020-06-17 2020-08-04
 India hCoV-19/India/TF14/2020
 ATTA1- G174A C241T T1947C C3037T C14408T C14786T C18877T G22104T C22444T A23403G G25563T C26735T C28854T G29868A

EPI_ISL_508494
 2020-06-17 2020-08-04
 India hCoV-19/India/TF15/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T T1947C C3037T G11272T C14408T C18877T C22444T A23403G G25563T C26735T C28854T G29868A

EPI_ISL_508495
 2020-06-17 2020-08-04
 India hCoV-19/India/TF17/2020
 ATTAA1- C241T A438G T1947C C3037T T6409A C14408T G17331T C18877T C22326T C22444T A23403G G24197T G25563T C26735T C28139T C28854T G29868A

EPI_ISL_508497
 2020-06-17 2020-08-04
 India hCoV-19/India/TF20/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A2645C C3037T C10039T T13150C C14408T C18877T C22444T A23403G G25563T C26735T C28651T C28854T G29868A

EPI_ISL_508508
 2020-06-17 2020-08-04
 India hCoV-19/India/TF7/2020
 C241T G419T C1545T T1947C C3037T A11446G C13458T C14408T C18877T C22444T A22525G A23403G GT25555TG G25563T C26735T C28854T G29868A

EPI_ISL_508509
 2020-06-17 2020-08-04
 India hCoV-19/India/TF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C10039T C14408T C18877T C22444T A23403G G25563T C26735T C28854T G29868A

EPI_ISL_509374
 2020-06-17 2020-08-05
 Singapore hCoV-19/Singapore/764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3951G C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509635
 2020-06-17 2020-08-05
 Spain hCoV-19/Spain/COV005143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T G5665A G8371T C9430T C10336T G13025K C14408T C17004Y A23403G C25513T G25563T G27014A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_511930
 2020-06-17 2020-08-10
 India hCoV-19/India/GA18/2020
 AT1- C241T C313T C3037T C5700A G6443T G10465A C11671T C14408T G19348T A23403G C25413T G28371T GGG28881AAC G29734A G29868A

EPI_ISL_511931
 2020-06-17 2020-08-10
 India hCoV-19/India/GA30/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C313T C3037T C4093T C5700A C14408T C19011T A23403G C26447T GGG28881AAC G29868A

EPI_ISL_512313
 2020-06-17 2020-08-11
 Latvia hCoV-19/Latvia/088/2020
 C241T C313T C2388T C3037T C3602T C9114A C14408T A23403G T26424C G27147T GGG28881AAC

EPI_ISL_512463
 2020-06-17 2020-08-11
 United Kingdom hCoV-19/Scotland/CVR3915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T C1101T C3037T C7011T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512663
 2020-06-17 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T A3058G C6318T G10360A A14033G C14408T G15957T A23403G C25096T C25703T A28574C GGG28881AAC CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_512878
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1007/2020
 C241T C3037T C10582T C14408T C20611T C22444T G22706T A23403G A25208G G25563T C26735T C28854T

EPI_ISL_512879
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1008/2020
 C241T C2232T C3037T G3307T C10582T G11521C C14408T C22444T G25563T C26461T C26735T C28854T

EPI_ISL_512880
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1009/2020
 C241T C3037T C14408T GGG28881AAC

EPI_ISL_512881
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1010/2020
 C241T C3037T C14408T C18877T C22000A A23403G G25563T G26144T C26735T

EPI_ISL_512884
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1013/2020
 C241T A1002G C3037T C14408T A23403G GGG28881AAC

EPI_ISL_512885
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1014/2020
 C241T A1002G C3037T C14408T GGG28881AAC

EPI_ISL_512886
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1015/2020
 C241T A2956G C3037T C14408T C27304A GGG28881AAC -T29866AACAACC

EPI_ISL_512887
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1016/2020
 C241T C3037T C11345T C14408T C17118T C18877T A23403G G25563T C26735T

EPI_ISL_512888
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1017/2020
 C241T C3037T C9924T C10582T A11782G C14408T C18877T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_512889
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1018/2020
 C241T C3037T C14408T GGG28881AAC

EPI_ISL_512896
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1026/2020
 C241T C3037T C14408T G21641T A23403G A28704G GGG28881AAC C29640T

EPI_ISL_512903
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1034/2020
 C241T C3037T A9782G C14408T GGG28881AAC

EPI_ISL_512905
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1055/2020
 C241T C3037T G10427A C14408T C25578G C28139T GGG28881AAC

EPI_ISL_513063
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH936/2020
 G105T C193T C241T C14408T G25563T C26735T

EPI_ISL_513066
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH992/2020
 C241T T1708C C3037T C14408T GGG28881AAC

EPI_ISL_513067
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH993/2020
 C241T C1191T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_513068
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH995/2020
 C241T C3037T C11109T C14408T GGG28881AAC G29745T -G29867AGCTTGGCACTGATCCT

EPI_ISL_513069
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH996/2020
 C241T C3037T C14408T T16456C C21008T G26372T GGG28881AAC

EPI_ISL_513070
 2020-06-17 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH997/2020
 C241T C3037T C14408T T16456C C21008T A23403G G26372T GGG28881AAC

EPI_ISL_514619 MT892966
 2020-06-17 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10376T T13339C C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514915
 2020-06-17 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2512/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29587A G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514917
 2020-06-17 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2514/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29587A G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514918
 2020-06-17 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2515/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C28311T G29179T G29587A G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514919
 2020-06-17 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2516/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514920
 2020-06-17 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2517/2020
 ATTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514921
 2020-06-17 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2518/2020
 ATTAA1- C241T C829T C1059T C3037T G5194T C11916T C14408T C16650T A20675T C22450T A23403G G25563T G29179T G29779T T29867A

EPI_ISL_514925
 2020-06-17 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2522/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514927
 2020-06-17 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2524/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514928
 2020-06-17 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2525/2020
 ATTAAAG1- C241T C1059T T2803A C3037T C11916T C14408T C16650T A20675T A23403G G25563T C28603T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_514931
 2020-06-17 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2528/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516424
 2020-06-17 2020-08-20
 North Macedonia hCoV-19/North Macedonia/3861/2020
 ATT1- C241T C313T G1738T C3037T G13617T C14408T A23403G G27463T G27598A GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_516749
 2020-06-17 2020-08-22
 United States hCoV-19/USA/SC-20-0946-T07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTC1- C241T C811T C1059T G1748A C3037T G4288T A8845G C14408T C16260T C17822T T22031C A23403G C23707T G25563T C28821A GTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29759-

EPI_ISL_517622
 2020-06-17 2020-08-24
 Suriname hCoV-19/Suriname/SR-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C15324T C16193T C18060T A22404T C22450T A23403G C28253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518015
 2020-06-17 2020-08-25
 Singapore hCoV-19/Singapore/835_2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C2094T C6310A C6312A C10319T G11083T C13730T A15249G G16014A C19524T C23185T C23929T G25644T G26769A C27998T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522018 MT969440
 2020-06-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522026 MT969448
 2020-06-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13275T C14408T C16247T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522027 MT969449
 2020-06-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522035 MT969457
 2020-06-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2314/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522403 MT946892
 2020-06-17 2020-08-25
 United States SARS-CoV-2/human/USA/AK-PHL529/2020
 ATTAAAGGTTTATAC1- C241T T1099G C2143T C3037T C14408T A20268G A23403G C29077T C29370G A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_523619
 2020-06-17 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525803
 2020-06-17 2020-09-01
 United States hCoV-19/USA/CA-OHSU-0690/2020
 ATT1- C241T C3037T C8818T C14408T C15952T G20980A A23403G CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_525878
 2020-06-17 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CG241T C3037T C14408T C18086T T19839C A23403G GGG28881AAC

EPI_ISL_525881
 2020-06-17 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1213T C2939T C3037T G7037A C12473T C14408T A23403G G25563T C26110T

EPI_ISL_525883
 2020-06-17 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1605C C3037T T11075C G12514T C14408T C17894T T19839C G21776A C22978T A23403G A23756G GGG28881AAC G29033T A29903-

EPI_ISL_525885
 2020-06-17 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G14500T A20268G A23403G C28854T C29274A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_525900
 2020-06-17 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0785/2020
 ATTAAAGGTT1- C241T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_527892
 2020-06-17 2020-09-05
 Nigeria hCoV-19/Nigeria/ON969-CV145/2020
 ATTAA1- C241T C3037T A3430C G6373T G12167T C14408T C18570T A23403G G25996T GGG28881AAC

EPI_ISL_527915
 2020-06-17 2020-09-05
 Nigeria hCoV-19/Nigeria/OY636-CV192/2020
 ATTAAA1- C37T C241T C3037T C14408T C18189T A20374G A23403G C26606T C26942T GGG28881AAC

EPI_ISL_529066
 2020-06-17 2020-09-10
 Peru hCoV-19/Peru/LIM-UPCH-0004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T T8800C C9521T C14408T C18568T A23403G C26110T A26530G A27562G TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_529069
 2020-06-17 2020-09-10
 Peru hCoV-19/Peru/LIM-UPCH-0012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C4002T A8825G G10097A C13536T C14408T A23403G C23731T T25520C T27412G G27414A G27478T GGG28881AAC G29179T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529070
 2020-06-17 2020-09-10
 Peru hCoV-19/Peru/CAL-UPCH-0013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4657T C5907T C6543T C14408T C15277T A21917G A23403G C24023T G24116T C25872T A26530G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529072
 2020-06-17 2020-09-10
 Peru hCoV-19/Peru/LIM-UPCH-0022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2040T C3037T C4002T T9065C G10097A C13536T C14408T A23403G C23536A C23731T A24905G G25947C T27465A A28508T GGG28881AAC G29179T CAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29686-

EPI_ISL_529074
 2020-06-17 2020-09-10
 Peru hCoV-19/Peru/CAL-UPCH-0037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C832T C3037T G4657T C5907T G12191T C14408T C15277T A21917G A23403G C25872T A26530G TTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29822-

EPI_ISL_529077
 2020-06-17 2020-09-10
 Peru hCoV-19/Peru/LIM-UPCH-0041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C4084T T8473C G10265A C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_529078
 2020-06-17 2020-09-10
 Peru hCoV-19/Peru/ANC-UPCH-0043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C4002T C6196T G10097A C12651T C13536T C14408T A23403G C23731T A28174C GGG28881AAC CAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29686-

EPI_ISL_529915 MT992730
 2020-06-17 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1113/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C3768T C11916T C11931T C14408T A16839G C18998T A23403G G25563T G29540A C29870A

EPI_ISL_533274
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DCC5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C2221A A2576T C3037T C5175T C6401T C14408T A23403G C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533278
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DB27C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2676T C3037T C4010T C4582T G8540A C13862T C14408T C21811Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533279
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E1AB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G11083T C14408T G18651T A23403G C23731T C24378T T24763C G25757T C28093T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533281
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-5E535E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11600G C14408T A14964G A23403G A25448G C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533282
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E0283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3932A G6961T G10097A C14408T G15982T G17144A C22713T G23401T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533284
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DF032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3932A G6961T G10097A C14408T G15982T G17144A C22713T G23401T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533286
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DB6DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2560G C3037T G9479T G10097A C14408T A19946G A23403G C23731T G24193C G28178T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533288
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DE6B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T C19488T A23403G G23611T C27791T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533290
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E1307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4331T C6318A C14408T G17761A A23403G G24368T C25339T G25563T G28727T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533293
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DEBD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6847T C7006T G7936C T12145G C14408T C15960T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533294
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E1E06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4741C C14408T C16887T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533295
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5D9FE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533302
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E004D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7878C G10097A C14408T T16348C C21575T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533305
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-5E542E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6378G C9491T A11600G C14408T A23403G A25448G C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533306
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DB4FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2676T C3037T C4010T C4582T G8540A C13862T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533309
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DD5BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10833T C14408T T15723C C19374T T22537C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533310
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DD18C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T G10097A C12403T C14408T A19946G A23403G C23731T G24193C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533311
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-5DCCB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3176T A5608G C7164Y A11794G A12026T C14408T C16470T C21365T A23403G T26298C G26450A A27399C A28856C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533316
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-5E5330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533319
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E4559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1181T G1914A C3037T G4399T C8247T C8917T C14408T T16456C C18687T T18753C A23403G G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533321
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DE4A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T G15906K G16700T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533325
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DF339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3932A G6961T G10097A C14408T G15982T G17144A C22713T G23401T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533327
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DAF1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G21468T T22849C C22993T A23403G G25606T ACTCTCCAATTTTTCTTA27683- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533329
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E2CA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T G2585T C2644T C3037T C7732T C10252T C14408T C16175T A23403G G23948T G25687T C26313T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533332
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DFB31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533335
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DA2C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C4002T G10097A C13536T C14408T C16293Y A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533338
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5E05D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C6843T G10097A C13378T C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533339
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DEA44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1442C C3037T C14408T G18674A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533340
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DABDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G21468T T22849C C22993T A23403G G25606T ACTCTCCAATTTTTCTTA27683- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533342
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DA170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T C16178T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533343
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-5E0F31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C875T C3037T C3874T C4002T G8353A C8950T G10097A C13536T C14408T C21575T G22592T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533344
 2020-06-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5DF7B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1442C C3037T C14408T G18674A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535709 MW001925
 2020-06-17 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4747/2020
 C241T C3037T C14408T A20268G A23403G C25433T C28854T C29249T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535710 MW001926
 2020-06-17 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4748/2020
 C241T C3037T C14408T A20268G A23403G C25433T C28854T C29249T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535711 MW001927
 2020-06-17 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4749/2020
 C241T C3037T C14408T A20268G A23403G C25433T C28854T C29249T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535712 MW001928
 2020-06-17 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4750/2020
 C241T C3037T C14408T A20268G A23403G C25433T C28854T C29249T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535713 MW001929
 2020-06-17 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4751/2020
 C241T C3037T C14408T A20268G A23403G C25433T C28854T C29249T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535714 MW001930
 2020-06-17 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4752/2020
 C241T C3037T C14408T A20268G A23403G C25433T C25702Y C28854T C29249T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535715 MW001931
 2020-06-17 2020-09-15
 United States SARS-CoV-2/human/USA/CA-CDC-4753/2020
 C241T C3037T C14408T A20268G A23403G C25433T C28854T C29249T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_540923
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/ANC-UPCH-0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T C8078T G10097A C13536T C14408T C19854T A23403G C23453T C23731T G28827T GGG28881AAC TGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29691-

EPI_ISL_540925
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T A3854C C4002T C5886T G10097A C10319T C12854T C13536T C14408T A21131G A23403G C23731T C27879A GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_540926
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C4002T C6336T G10097A C12854T C13536T C14408T A16550G G20752T A21131G A23403G C23731T GGG28881AAC TGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29689-

EPI_ISL_540928
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/CAL-UPCH-0027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T A1682G C3037T G3431T C6198T C14408T G16968A T19839C C22323T C22458T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_540930
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G5206T A7766G C13994T C14408T C18568T C21806T A23403G C25749T A26530G C29421T C29754T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_540932
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C3768T C4002T G10097A C13536T C14408T G15649T A19445G A23403G C23731T C27425T G27478T GGG28881AAC G29179T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_540933
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C4084T T8473C G10265A C14408T A23403G GGG28881AAC CATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29696-

EPI_ISL_540935
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/CAL-UPCH-0035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- G61T C241T C3037T C4002T A4420G G10097A A12448T C13536T C14220T C14408T C18486T A23403G C23604T C23731T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540936
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C4002T G10097A C13536T C13957T C14408T A23403G C23731T C26936T GGG28881AAC CCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29718-

EPI_ISL_540957
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T T4711C C14408T A16583C T19839C A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540958
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/CAL-UPCH-0080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2485T C3037T T5013G C6813T C7125T C14408T T19839C A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540960
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C398T C3037T C14408T G15444T C16293T C19572T T19839C A23403G G28655T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540962
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G10886A C14408T C18568T C19545T A23403G A26530G AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540963
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T T4111C T7730C AA8379GG C14408T C17304T A20055G A20268G A23403G AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_540966
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G10265A C14408T T14679C C18261T A23403G C27911A GGG28881AAC G29179T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_540968
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C4002T C4449A G10097A C13536T C14408T C22987T A23403G C23731T G24794T GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_540969
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T G10265A C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540970
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/CAL-UPCH-0092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1282T C3037T C3117T C4002T G10097A C13536T C14408T C18946T A23403G C23731T G27478T G28001T GGG28881AAC G29179T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540971
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T C8645T A9436G G10097A C10449T C13536T C14408T C18687T A21131G A23403G C23731T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540972
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T C14616T G16968A C17985T T19839C A23403G G25552T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_540976
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/CAL-UPCH-0098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T A1682G C3037T G3431T C6198T C10818T C14408T G16968A T19839C C22323T C22458T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540977
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C66T C241T C3037T C4002T G10097A C13536T C14408T C18888T A22330T T22828C A23403G C23731T A23989T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_540979
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C4815T C9996T C14408T T19839C A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_540980
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T A1124C C3037T C9962T C14408T C19572T T19839C A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540981
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C18568T A23403G C28093T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_540982
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C4002T A8825G G10097A C13536T C14408T A23403G C23731T T25520C T27412G G27414A G27478T GGG28881AAC G29179T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_540985
 2020-06-17 2020-09-22
 Peru hCoV-19/Peru/ANC-UPCH-0107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T T1753C C3037T C4002T G10097A A10323G C13536T G14268A C14408T C21952T A23403G C23731T T25476A GGG28881AAC G29179T A29684G TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_543256
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-3855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C3540T C14408T G16336A G20274T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543260
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-3859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A13938G C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543261
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-3861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14676T A23403G G25647T T27722C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543263
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-3864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543283
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-3924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T G10642A C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543312
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543318
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543319
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6781T C8905T C14408T A23403G A24389G G25563T C27294T G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543320
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4927T C13168T C14408T C16163T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543321
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1268A C3037T T6304G C14408T C16092T A23403G GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543322
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C A12458G C14408T T16425G G16935T C17639T A23403G G25563T C25611T C26455T C26936T C29738T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543323
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1677C C3037T C14408T C19524T A23083G A23403G C23536A A24129G G25563T G26257T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543324
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2969G C3020T C3037T G4913T G8131T C14408T C17104T C21767T A23403G G25563T G26389T A26743G C27964T T27992C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543326
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G G19006T C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543328
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543332
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A20753G A23403G G25494T G25563T G26828T A29083G G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543335
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11464A C14408T A23403G G26526T G27390T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543348
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C14408T A18751G T18921A A23403G G25266T G25563T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543358
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A5371G T6652C G6894T C14408T A23403G G25563T A25973G G27706T G28079T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543359
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543360
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C14408T A23403G G25088T G25563T C28890T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543361
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543367
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A A2568G C3037T C8752T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543369
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G16014T C16260T A23403G G25563T G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543394
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C664T G840A C1063T C3037T G9130T CC14407TT C19011T A23403G G26193T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543395
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C20233T A23403G G25563T G25641T G26439A C27964T C28391A C28849T G28899T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543550
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1722T T1907C C3037T C10015T C14408T G14829T C15654T C23191T A23403G G25563T G26769T G27670T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543551
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C3540T C14408T G16336A G20274T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543552
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12756T C14408T C20474T A23403G C23481T G25660T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543565
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T G13835T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543568
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10626T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543569
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A T10906C C14408T C18687T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543571
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543572
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T C20480T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543574
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C2062T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543575
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C10790T C13487T C14408T C16260T T20331C C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543576
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C8664T C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T G27225A C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543580
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543581
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13975T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543582
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T T11134C C14408T A18535G C19011T A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543583
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6352T C14408T C19011T C21057T C21575T A23403G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543585
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C17550T G19872A G22014T A23403G G26526T C26882T GGG28881AAC C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543586
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4546C G6532T A11201G C14408T A23403G G23868T A24129G G25563T C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543589
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C22313T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543590
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T G6307T C13487T C14408T C16192T C16260T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543591
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14676T A23403G G25647T T27722C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543594
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C21575T C22594A A23403G G25244T G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543597
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T T17751G A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T T29760C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543598
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T C23373T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543599
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1836T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543602
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C589A C1059T C3037T C6896T C9474T C10319T C14408T C16308T C16694T A23403G G25563T C25626T A25986T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543605
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T C29274A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543606
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543607
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4162T C9163A C9430T C10188T A13265G C14408T C16694T A23403G T24982C G25563T G27390C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543608
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543609
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C17850T G22346T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543611
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G16014T C16260T A23403G G25563T G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543612
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C988T C1059T C3037T C10319T C11674T C14408T C16580T A18424G C18681T G20069T C21304T A23403G G25563T G25907T C27964T C28472T C28507T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543615
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C398T C1057T G2282A C3037T A4452G T9742C C14408T C17639T C19255T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543619
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1495T C3037T T7332C T7831A C14408T C16376T A23403G G25563T C27498T G28362C G28845T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543621
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A G2599T C3037T T9742C C14408T C17639T A23403G C24026T G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543650
 2020-06-17 2020-09-23
 United States hCoV-19/USA/TX-HMH-4474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1820A C3037T A3297G C14408T G15452T G17151T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553482
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CBCF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G C25553T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553512
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-95C9C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553558
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95570E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083K C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553561
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CAE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C19454T T23255C A23403G G27572T A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553579
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95D074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C9803A A10786G C10833T C14408T C18687T A23403G G25217T C25844T T27811C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554225
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950DE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T G15910T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554262
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-956D65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T C22858T A23403G G23868T C25844G GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554863
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C28E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554865
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E9A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G G25598T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554870
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EA4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554875
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CC35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC T29559C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554883
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C29D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623C C3037T C4577T T7009A C14408T A23403G C27046T C27143T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554912
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CCEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554924
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554945
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G C28292A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554975
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T C6285T A8821G C10138T G11083T C14408T C15752T C18877T G22801T A23403G C23613T G24197T G25563T T26066C C26735T T28098C G29254T G29543T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554988
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C2AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3875T T9630C A12627G C14408T A23403G C26447T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555013
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555022
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C50D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T G10265A A11595G C14408T A23403G GGG28881AAC C29013Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555035
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C6EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555051
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C53A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555060
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555077
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23557Y C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555107
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G25912T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555108
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5018R C14408T C15738T T18260C A20712G A23403G G25429T C25611T T26418C C29025T C29585T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555114
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95A217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T G15910T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555116
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T A20055G A23403G C23731T C25701A G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555119
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CCCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555120
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C1AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11511T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555147
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DA3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4076A C14408T C18877T T22165C A23403G C24771T GAA25437- G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555152
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T C17766T A20136G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555155
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DA79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555156
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4149C CAG6501- A8031G C12525T C14408T G17523T A23403G G25599T GGG28881AAC C29353T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555157
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95018D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3787T A4926C C14408T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555159
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-9506F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C9438T C14408T G20944T A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555165
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DA4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4076A C14408T C18877T T22165C A23403G C24771T GAA25437- G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555169
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19140T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555177
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555179
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DED7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G C25553T G25598T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555200
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DA88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8991T C11289T C14408T T15051C A20255G C21575T A23403G CTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAG28006- G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555210
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DA6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T C8208T C8645T A12410G C14408T C17125T A18366G C18788T T19839C T21093C G21867T A23403G C25703T C26942T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555213
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DA5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5290Y C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555216
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DEF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G G25177T G25598T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555232
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DF2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A A11323T C12756T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555255
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DF10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G G25598T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555264
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DA2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T C8208T C8645T A12410G C14408T C17125T A18366G C18788T T19839C T21093C G21867T A23403G C25703T C26942T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555268
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6843T C7398T G10265A C14408T A15653G C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555273
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95028A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A10948G C14408T C17766T A20136G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555278
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DA97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C10854T C13335T C14408T A20268G A23403G C28854T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555294
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95030F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C8809T C14408T T19839C C19895T A23403G GTT26155- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555305
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DF01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A12174G C13730T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555309
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DA00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4076A C14408T C18877T T22165C A23403G C24771T GAA25437- G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555312
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E6CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T G9974T G10097A T10117G G11310T G11521T C13536T C14408T C21622T A23403G C23731T A26115G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555339
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555347
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C5392T C7735T C14408T C19454T T23255C A23403G G27572T A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555355
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E5E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555360
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G C28603T C28826M GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555372
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6013T C14408T C21637T A23403G G25302T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555375
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E7F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1377T C1962T C3037T C7735T C14408T C19454T T23255C A23403G A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555379
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E61A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6013T C14408T C21637T A23403G G25302T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555380
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A605G C3037T A4328G A8072G C11919T C14408T T18909C A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555381
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E50E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3766C C5183Y C10449T C14408T G16897T T19839C A23403G T24601C C27005T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555382
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C475T C3037T G4076A C14408T C18877T T22165C A23403G C24771T GAA25437- G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555388
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555395
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11095T G14202T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555397
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555401
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555403
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C5812Y C14408T A23403G T27264G C28093T GGG28881AAC G29543A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555408
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E45C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1102T C3037T C3587T C8727T C14408T C18246Y G20134T G22021T A23403G G25440T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555410
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E4B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C18401Y C19454T T23255C A23403G G27572T A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555412
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E37D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A453W C853T C3037T C9474T C12513T C14408T C15237T A23403G C26133T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555428
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8479G C14408T G20931A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555436
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555449
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E3AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3511T C14408T C20031T G22363R C22993A A23403G G23593T GGG28881AAC C29420T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555450
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E42F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555462
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DFE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T G1772A C3037T C4002T C7420T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C29738T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555465
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9547E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1989G C3037T C6582T C7321T C12484T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555472
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C4683T G10097A C13536T C14408T C18115T G22199T A23403G C23731T G25563A GGG28881AAC GTACAGTGAACAATGCTAG29759- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555479
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11095T G14202T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555480
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E54A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555484
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E98A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22520T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555486
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11095T G14202T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555499
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E47A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555503
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E3B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2919T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC T29410C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555506
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DE9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C12756T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555513
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DE6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C12756T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555517
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DEB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555535
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E1FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555541
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DBC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GGG28881AAC G29781S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555542
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DBA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A6898G A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555546
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DBD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4510T C7851T G10097A C14408T C14708T C18131T C19170T A23403G C23731T T23849C T26442C G28077T G28580T C28744T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555547
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E1A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C12374T C14408T G14428T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555553
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DE8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3511T C14408T C20031T C22993A A23403G G23593T G25835A GGG28881AAC C29420T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555567
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C14408T A23403G GTT26155- C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555596
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E1CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16338T G18803T C21614T A23403G T26821C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555602
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2485Y C3037T C6681T C7162T C10626T C14408T G15438T C19164T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555608
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5339Y T5507A G11083T C14408T A20268G C21614T A23403G C24700A C28854T G29081K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555653
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DE7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C4158Y T5507A G11083T C14408T A20268G G21010A C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555656
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DB67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4510T C7851T G10097A C14408T C14708T C18131T C19170T C19875T A23403G C23731T T23849C T26442C G28077T G28580T C28744T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555659
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DBB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555696
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DBEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T T18435C A23403G G28763A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555712
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DB58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555793
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94BA4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556085
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EEF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G G25302T C25703T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556111
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EB0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1528T C3037T C14408T T19893C A23403G GGG28881AAC G29737T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556118
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EB75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3811T G8371T G11083T C14408T G22225A C22477T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556131
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94ECCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G A27400G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556136
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EF2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556160
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EB66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3811T G8371T G11083T C14408T G22225A C22477T A23403G G25563T C27769G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556231
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EAF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556262
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EB84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5339T C10319T C11750T A12180G C12559T C14408T C19488T TTA20423- C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556297
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EDCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T A10323R G11083T C11962T C14408T G19894A G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556329
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94ED7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556337
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EE03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1692C C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556360
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EF97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556366
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EBA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22201T A23403G A28480G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556376
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EC63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8644C T12136C C14408T A17943G C21005T A23403G G25855C G27754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556387
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EDE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1692C C3037T C14408T C14925Y C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556392
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EDAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556393
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94EE30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556405
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EC72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T G18816R A23403G G25429T C26681T C29167T A29385G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556412
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94ED8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T444C C3037T A9634T C14408T A23403G G28690T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556413
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EE5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1692C C3037T C14408T C21637T A23403G A28169G GGG28881AAC C29095Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556436
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94ED60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11743T C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556440
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EE8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A G10642T C14408T C19367T A19650G G21776A A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556464
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EB93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G G22201T A23403G A28480G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556474
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EC45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556475
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EE21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1458R C3037T T5507A C8597T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556484
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EBB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C2706T C3037T T7357C C7834T C14408T G18782K A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556502
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EEB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558626
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AE245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558633
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5BE4E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2071G C3037T G4136A G4960T C11224T C12295A C14408T A20073G A20268G C21846T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558644
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B0A57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T A2000C G2424A C3037T C9763T G12243A C12513T T12811A C14396T C14408T G19525T A23403G A23572G C26607T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558651
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B0240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G C25658T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558664
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5BE172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T844A A2641G C3037T C3622T C14408T T17353C A23403G C25844T C28087T GGG28881AAC C29160T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558670
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5ADE51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12145G C14408T C20759T C21676T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558673
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B475C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T G5564T A9433T TAT9858- G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558696
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B1E2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C10854T C13335T C14408T A20268G A23403G C28854T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558700
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AF226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7815T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558759
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AE96E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8644C C8980T C14408T A17943G C21597T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558766
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AF01D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3932A G6961T G10097A C14408T G15982T G17144A C22713T G23401T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558789
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5BDF4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T844A A2641G C3037T C3622T C14408T T17353C A23403G C25844T C28087T GGG28881AAC C29160T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558802
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5BFDF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C10626T C14408T G15438T C19164T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558803
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5BBF02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T A6867C G8353A C8950T G10097A C13536T C14408T C16915T A23403G C23731T GGG28881AAC G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558804
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B465F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4893T C14408T G21624T A23403G C24378T G25471T C26464T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558809
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AE676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C1915T C3037T G6476T C8140T G10097A G11083T T13216G C14408T C18606T A23403G C23731T C25708T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558833
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5BE048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558837
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B142B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1946T C3037T A3569G A6211G A8659G C14408T T18438C C19488T C21008Y A23403G C26681T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558843
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5BF047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T A6867C G8353A C8950T G10097A C13536T C14408T C16915T A23403G C23731T GGG28881AAC G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558848
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5ADC1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C8597T C14408T A23403G A27946T G28086T G28487C GGG28881AAC T28894C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558852
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B0F3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7945T C10635T C13356T C14408T C21342T A23403G G25877T G27762T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558856
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B0D8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559370
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AB258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559543
 2020-06-17 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4AE352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560815 MW049006
 2020-06-17 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0202/2020
 C241T C3037T C6525T T9172C A10948G C14408T A16169G G23069T A23403G T26066C G26730T T27977C GGG28881AAC

EPI_ISL_561285
 2020-06-17 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C27883T G28703C C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565922
 2020-06-17 2020-09-30
 Spain hCoV-19/Spain/PV-IBV-98005142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4672Y G4951S G10563S T10606Y A14302W C14408T G15625S C16255Y A20268G C21781M C22593Y C22710Y A23403G C28344T A29491W G29734C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MT731663
 2020-06-17 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_190/2020
 C241T C2469T C2638T C3037T C8655T C14408T A23403G G23522C C25844T GGG28881AAC

MT740384
 2020-06-17 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_192/2020
 C241T A1163T G2585T C3037T C3961T C14408T A19008C T20592C C21575T C21846T A23403G G23608T A24970G G25907T G26230T T26903C C28006G GGG28881AAC

MT740396
 2020-06-17 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_193/2020
 C241T A1163T C3037T A8026G C9502T G11083T C11653T C14408T A23403G C26895T GGG28881AAC

MT740478
 2020-06-17 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_125/2020
 C241T A1163T C2040T C2388T C3037T C14408T G19723T A23403G C25504G C25624T GGG28881AAC

MT740479
 2020-06-17 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_126/2020
 C241T T1017C A1163T T2314C C2388T C3037T C4331T A12187G C14408T G16014T G19723T C22450T A23403G C25521T G25552T GGG28881AAC C29614T G29755A

MT811530
 2020-06-17 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1098-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C3369T C10626T G11743T C14408T C18657T C20825T A22105T A23403G G25166C C25528T C25603T GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811531
 2020-06-17 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1100-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C12488T C14408T A23403G C25528T G27084A GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811532
 2020-06-17 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1101-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C10039A C14408T A20268G A23403G T24076C G26167T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT919534
 2020-06-17 2020-08-22
 Denmark SARS-CoV-2/mink/DK/AL64_Farm1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15656T A23403G C25936T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT919535
 2020-06-17 2020-08-22
 Denmark SARS-CoV-2/mink/DK/KL11_Farm1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15656T A23403G C25936T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT919536
 2020-06-17 2020-08-22
 Denmark SARS-CoV-2/mink/DK/KL14_Farm1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15656T A23403G C25936T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT940507
 2020-06-17 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T G29179T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT940508
 2020-06-17 2020-08-28
 Iraq SARS-CoV-2/human/IRQ/USAFSAM-S092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1302T C3037T C10834T C14408T C23127T A23403G G25563T C28887T C29719T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_477800
 2020-06-18 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B4F1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3738T G10097A C10868T C13426T C14408T C18131T G19180A A22107G A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477802
 2020-06-18 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B4F49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3738T G10097A C10868T G11083T C13426T C14408T C18131T G19180A A22107G A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477805
 2020-06-18 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B4F94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3738T G10097A C10868T C13426T C14408T C18131T G19180A A22107G A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477806
 2020-06-18 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B4FA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3738T G10097A C10868T C13426T C14408T C18131T G19180A A22107G A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477807
 2020-06-18 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B4FB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1620G C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477808
 2020-06-18 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B4FC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C501T C3037T C3738T G10097A C10868T C13426T C14408T C18131T G19180A A22107G A23403G C23475T C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_480415
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_131/2020
 C241T C2388T C3037T C10252T G13812T C14408T G19723T A23403G GGG28881AAC

EPI_ISL_480416
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_132/2020
 C241T A1163T C2388T C3037T C14408T A23403G A23586G GGG28881AAC

EPI_ISL_480417
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_141/2020
 C241T A1163T C3037T C14408T C16830T A23403G GGG28881AAC

EPI_ISL_480418
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_144/2020
 C241T A1163T C2388T C3037T C10198T C14408T A23403G G25644T TTA26159- GGG28881AAC G28960T

EPI_ISL_480419
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_133/2020
 C241T A1163T C3037T C14408T G15260T A23403G G26268T GGG28881AAC

EPI_ISL_480420
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_135/2020
 C241T A1163T C3037T G10618T C12415T C14408T C14889T A23403G GGG28881AAC

EPI_ISL_480421
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_137/2020
 C241T A1163T C3037T C6813T G11083T A12061G C14408T A23403G GGG28881AAC

EPI_ISL_480424
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_138/2020
 C241T A1163T C3037T C14408T G15260T A23403G GGG28881AAC

EPI_ISL_480425
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_139/2020
 C241T A1163T C2395T C2470T C3037T A13712G C14408T A23403G GGG28881AAC

EPI_ISL_480426
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_145/2020
 C241T A1163T C3037T C3784T C6807T C14408T T21760C A23403G C25416T GGG28881AAC

EPI_ISL_480427
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_146/2020
 C241T A1163T C3037T C14408T A17645G A23403G GGG28881AAC

EPI_ISL_480439
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_150/2020
 C241T A1163T C3037T C14408T C19813T G21786T A23403G G23909T C24378T GGG28881AAC

EPI_ISL_480440
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_151/2020
 C241T A1163T T1651C C3037T C7165T C14408T G18255T A23403G C25603T T26551C GGG28881AAC

EPI_ISL_480441
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_152/2020
 C241T A1163T C3037T A3456G C14408T A23403G T24685C G26051A C28171T A28305G GGG28881AAC

EPI_ISL_480442
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_153/2020
 C241T A1163T C3037T T9016C C14408T A16275G A23403G T26726A GGG28881AAC

EPI_ISL_480445
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_154/2020
 C241T C3037T C14408T C21595T A23403G GGG28881AAC

EPI_ISL_480446
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_156/2020
 C241T C527T A1163T C1190T C3037T A4104G C14408T A23403G GGG28881AAC

EPI_ISL_480447
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_158/2020
 C241T C683T C2836T C3037T T3836A G4504T C14408T C14708T C18877T C22444T C23114A A23403G G25563T C26735T C28854T

EPI_ISL_480448
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_168/2020
 C241T A1163T C3037T T9016C C14408T A16275G A23403G T26726A GGG28881AAC

EPI_ISL_480449
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_172/2020
 C241T A1163T C3037T C3961T G12170A C12473T C14408T C22326T A23403G GGG28881AAC

EPI_ISL_480450
 2020-06-18 2020-07-02
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_173/2020
 C241T A1163T C2910T C3037T C3961T G5950T G13201T C14408T C22858T A23403G C27389T GGG28881AAC G29254T

EPI_ISL_480765 MT745733
 2020-06-18 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2151/2020
 C241T C3037T C6196T C14408T A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_482485
 2020-06-18 2020-07-04
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_155/2020
 C241T A1163T C2040T C2388T C3037T A3456G C14408T G19723T A23403G T24685C C25584T G26051A A28305G GGG28881AAC

EPI_ISL_482486
 2020-06-18 2020-07-04
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_160/2020
 C241T A1163T C2040T C2388T C3037T C5869T C14408T G19723T A23403G C27707T GGG28881AAC

EPI_ISL_482487
 2020-06-18 2020-07-04
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_118a/2020
 C241T C1190T C2040T C2388T C3037T C10252T G13812T C14408T G19723T A23403G GGG28881AAC

EPI_ISL_482488
 2020-06-18 2020-07-04
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_161/2020
 C241T A1163T C2040T C2388T C3037T C14408T G19723T A23403G C25504G C25624T GGG28881AAC

EPI_ISL_482489
 2020-06-18 2020-07-04
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_149/2020
 C241T A1163T C2388T C3037T C4113T C14408T T16828C G19723T A23403G C27707T GGG28881AAC

EPI_ISL_482700
 2020-06-18 2020-07-05
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_118/2020
 C241T C1190T C2040T C2388T C3037T C10252T G13812T C14408T G19723T A23403G GGG28881AAC

EPI_ISL_482878
 2020-06-18 2020-07-06
 Senegal hCoV-19/Senegal/68458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3373A C14408T C22227T A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_482887
 2020-06-18 2020-07-06
 France hCoV-19/France/OCC-29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2189T C2416T C3037T C3784T G7472A G8371T C14408T G16075T A17192C A23403G C23635T G25563T T27588A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_483520
 2020-06-18 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1093-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483522
 2020-06-18 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1095-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11083T C12488T C14408T A23403G C25528T G27084A GGG28881AAC

EPI_ISL_483523
 2020-06-18 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1096-SAN/2020
 ATTAAAGGTTTATACC1- C241T C3037T C4021T C6781T C6927T C11916T C13133T C14408T G16935T C19185T A23403G C26900T T27900A GGG28881AAC

EPI_ISL_483524
 2020-06-18 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1097-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1191T C3037T C4455T C7768T C11575T C14408T G15535T A20268G A23403G T26100A T27438C C28854T

EPI_ISL_483528
 2020-06-18 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1102-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1627T C3037T C9430T C14408T C14925T G19969A A20268G A23403G C24031T G28001C T28251G CA28253TC C28744T C28854T

EPI_ISL_483529
 2020-06-18 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1104-SAN/2020
 ATTAAAGG1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G G27461T A28225G C28854T

EPI_ISL_483533
 2020-06-18 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1110-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_483539
 2020-06-18 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1116-SAN/2020
 ATTA1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T

EPI_ISL_483891
 2020-06-18 2020-07-08
 United Kingdom hCoV-19/England/BIRM-60806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T AG3327GT A3569G C3695T A6211G A8659G C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484341
 2020-06-18 2020-07-08
 United Kingdom hCoV-19/England/NOTT-1120FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484346
 2020-06-18 2020-07-08
 United Kingdom hCoV-19/England/NOTT-112143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484508
 2020-06-18 2020-07-08
 United Kingdom hCoV-19/England/SHEF-CFFA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484679
 2020-06-18 2020-07-08
 United Kingdom hCoV-19/Scotland/CVR3897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T A16882G G19542T G20679A A23403G T27576G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484808 MT750021
 2020-06-18 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1463A G2305T C3037T G7557A C8818T C14408T C18377T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484814 MT750027
 2020-06-18 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484816
 2020-06-18 2020-07-08
 United States hCoV-19/USA/WI-UW-441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CGGTTTCGTCCGT197- C241T T2845C C3037T C6500T C14408T A20268G G22014T A23403G C27577T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484819 MT750031
 2020-06-18 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T C7417T C14408T T16425G C17639T A23403G G25563T C25611T C26455T C26936T C29738T G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484822 MT750034
 2020-06-18 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484824 MT750036
 2020-06-18 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5310T C12294T C14408T A23403G C25511T G25563T CGGAGT29743- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484833 MT750043
 2020-06-18 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5310T C12294T C14408T A23403G C25511T G25563T CGGAGT29743- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484843 MT750053
 2020-06-18 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G22021T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484845 MT750055
 2020-06-18 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484856 MT750065
 2020-06-18 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T C3037T C4182T C6539T C12488T C14408T C18877T A23403G G25563T C29784T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485635
 2020-06-18 2020-07-09
 Senegal hCoV-19/Senegal/68349/2020
 AT1-C A22T C241T C335T C1625T G2731A C3037T C14408T A20268G A23403G C23707T C25886T C26124T C28833T C29739T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_487304
 2020-06-18 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0336/2020
 ATTAAA1- C241T C3037T A7064G G11083T C14408T C22675T G22927T A23403G C26681T C26822T T27384C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_487308
 2020-06-18 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C815T C3037T C6762T T12503C C14408T G15672T A23403G G25455T G25770T GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_487319
 2020-06-18 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0368/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T A20387G A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_487322
 2020-06-18 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0371/2020
 ATTAA1- C241T C3037T C14408T A20387G A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489913
 2020-06-18 2020-07-14
 United States hCoV-19/USA/WI-GMF-06872/2020
 ATT1- C241T C715T C1059T G2036T C3037T C4686T C7165T C11916T C14408T AA21550MW G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490695
 2020-06-18 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR3899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3888G C5467T G9479T C14408T C21114T G21987T TT21994CA C22879A T23042C A23403G T23765G C25658T C26333T C26395Y T26605G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490751
 2020-06-18 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-1659EF/2020
 ATTAAAGGTT1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_490839
 2020-06-18 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-166122/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2638T C3037T G11083T C14408T A23403G GGG28881AAC G29825A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_494035
 2020-06-18 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-16675D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C9438T C14408T G21974C A23403G GTT26155- C27630T GGG28881AAC G29777T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_495016 MT799969
 2020-06-18 2020-07-22
 India SARS-CoV-2/human/IND/GBRC279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C3737T G3896T G4866T G5138T A6748G C14408T C14425A T21890C A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495017 MT799970
 2020-06-18 2020-07-22
 India SARS-CoV-2/human/IND/GBRC280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T G2164T C2836T C3037T G8368A C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29284T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_495018 MT799974
 2020-06-18 2020-07-22
 India SARS-CoV-2/human/IND/GBRC281/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G353A C3037T C14408T A23403G G23755T G24550A C25276T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495019 MT799976
 2020-06-18 2020-07-22
 India SARS-CoV-2/human/IND/GBRC282/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2836T C3037T C14408T C18877T C19367T C22444T A23403G G25563T C26082T C26710T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_497141 MT831680
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2509/2020
 ATTAAAG1- C241T T833C C1059T C3037T C6548T C7860T C14408T T17108A G20033T G22592T A23403G G25537A G25563T C26822T C27964T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497142 MT831620
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2510/2020
 AT1- C241T T833C C1059T C3037T C6548T C7860T C14408T T17108A G22592T T22921C A23403G G25537A G25563T C26822T C27964T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497178 MT831703
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2546/2020
 ATT1- C241T C3037T C14408T C14768T G18905A C22591T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497186 MT831540
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2554/2020
 ATTAAAGGTTT1- C241T G1085T C3037T C10292A C13335T C14408T C14670T C14768T C15933T G16968T T19839C A21717T C22591T A23403G G24781T C26681T G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497190 MT831694
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2558/2020
 A1- C241T C1204T C1441T G1747A C3037T C14408T C16289T C17745T C22675T A23403G G25429T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497197 MT831850
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2565/2020
 ATT1- C241T A2161G C3037T C5758T C14408T C16376T T18453C C18877T A23403G G25552A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497198 MT831855
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2566/2020
 AT1- C241T A2161G C3037T C5758T C14408T C16376T T18453C C18877T A23403G G25552A G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497199 MT831839
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2567/2020
 ATTAAAG1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497200 MT831644
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2568/2020
 AT1- C241T A2127G C3037T C3397T C14408T C15933T T19839C A23403G G23621T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497201 MT831820
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2569/2020
 AT1- C241T C3037T C6445T A6604G C14216T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497202 MT831798
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2570/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497203 MT831697
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2571/2020
 A1- C241T C1204T C1441T G1747A C3037T C9198T C14408T C16289T C17745T A23403G G25429T G28086T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497207 MT831574
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2575/2020
 AT1- C241T T2077C C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_497208 MT831689
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2576/2020
 AT1- C241T C3037T C14408T C15352T C15933T G16968T A17256T C18747T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_497210 MT831737
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2578/2020
 A1- C241T A2161G C3037T C5758T C14408T C15141T C16376T T18453C G18803T C18877T T22020C A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497211 MT831532
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2579/2020
 A1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C A21717T C22591T A23403G G28193T GGG28881AAC C29296T C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_497212 MT831661
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2580/2020
 A1- C241T G2144T C3037T C3768T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497213
 2020-06-18 2020-07-24
 United States hCoV-19/USA/WA-S2581/2020
 ATTAAAGGTTTATA1- C241T A2647G C3037T C14408T C15933T G16968T T19839C A23403G C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497214
 2020-06-18 2020-07-24
 United States hCoV-19/USA/WA-S2582/2020
 ATTAAAGGTTTAT1- C241T A2647G C3037T C14408T C15933T G16968T T19839C A23403G C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497215 MT831641
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2583/2020
 C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497219 MT831638
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2587/2020
 AT1- C241T C875T C3037T C14408T C14768T C15933T G16968T T19839C G21724T A23312G A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497220 MT831879
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2588/2020
 AT1- C241T C3037T C6445T C14408T G16813A G16852T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497221 MT831684
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2589/2020
 AT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C G21724T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497222
 2020-06-18 2020-07-24
 United States hCoV-19/USA/WA-S2590/2020
 AT1- G1401A G2051A C8782T C15045T C16887T C17747T A17858G C18060T A19308G C20031T A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497223 MT831723
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2591/2020
 A1- C241T C3037T C6445T A6604G C14216T C14408T G16813A A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497224 MT831594
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2592/2020
 ATT1- C241T C3037T A4372G A6293G C14408T C15933T G16968T G19009T T19839C A23403G G23593C G24193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497225 MT831781
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2593/2020
 A1- C241T C3037T C6445T C14408T G16813A G16852T A23403G C28093T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497226 MT831548
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2594/2020
 ATTAAAG1- C241T C3037T T8559A G8561A T10190C C10507T C14408T G15243T C19145T T19839C A23403G C28256T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497228 MT831875
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2596/2020
 ATTAAA1- C241T C3037T C6445T C14408T G16813A G16852T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497230 MT831859
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2598/2020
 ATTAAAGGTTT1- C241T C3037T C6445T C14408T G16813A G16852T A23403G GGG28881AAC G29254T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497232 MT831539
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2600/2020
 A1- C241T C313T T833C C1059T C3037T C6548T C7860T C14408T T17108A G20033T A21619G G21985T G22592T A23403G G25537A G25563T C26822T C27964T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497233 MT831872
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2601/2020
 AT1- C241T A2161G C3037T C5758T C14408T C16376T T18453C C18877T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497234 MT831799
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2602/2020
 ATTAAA1- C241T C3037T C10894T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497235 MT831727
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2603/2020
 AT1- C241T C1204T C1441T G1747A C3037T C14408T C16289T C17745T C19290T A23403G G25429T G28086T C29738T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497237 MT831739
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2605/2020
 ATTAAAG1- C241T C1060T C3037T C14408T T19839C A23403G G25445A G28183A GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497238 MT831852
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2606/2020
 AT1- C241T C1059T C3037T T12094C C14408T C16260T C18695T A23403G G25563T C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_497240 MT831767
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2608/2020
 A1- C241T C3037T G7393T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_497241 MT831733
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2609/2020
 AT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_497242 MT831673
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2610/2020
 AT1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497243 MT831584
 2020-06-18 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2611/2020
 A1- C241T C3037T G8075A A12199G A13042G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_498227 MT876431
 2020-06-18 2020-07-27
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_165/2020
 C241T C3037T C14408T C21595T A23403G GGG28881AAC

EPI_ISL_498228 MT876432
 2020-06-18 2020-07-27
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_167/2020
 C241T A1163T C3037T C3961T C14408T A23403G GGG28881AAC

EPI_ISL_498628
 2020-06-18 2020-07-27
 Belgium hCoV-19/Belgium/ULG-10246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T G12191T C14408T T15366C T16479C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498629
 2020-06-18 2020-07-27
 Belgium hCoV-19/Belgium/ULG-10247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T G12191T C14408T T15366C T16479C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501092
 2020-06-18 2020-07-30
 United States hCoV-19/USA/WA-UW-11089/2020
 ATTAAAGGTTTATA1- TCCC18GGGA AC35TT C241T C3037T C14408T C18877T A23403G G25563T C25904T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501094
 2020-06-18 2020-07-30
 United States hCoV-19/USA/WA-UW-11263/2020
 ATTAAAGGTTTATA1- TCCC18GGGA AACC34TTTA C241T C1059T C3037T T4441C G6125A T8883C TT8885AA T10554D A12557C AGG13512TTA TA14222GC C14225T C14408T TG17178GT G17182A C17639T T21146D A23403G T25191C G25563T C27654G TG29867AA C29870A

EPI_ISL_501102
 2020-06-18 2020-07-30
 United States hCoV-19/USA/WA-UW-11636/2020
 ATTAAAGGTTTATA1- TCCC18GGGA AACC34TTTH C241T C3037T C8950T TA14222GC C14408T C15933T G16968T C18881T T19839C A23403G C24381T GGG28881AAC C29784T -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_508259
 2020-06-18 2020-08-04
 India hCoV-19/India/GA65/2020
 A1- A4G C241T C313T C3037T C5700A G10465A G11447A C12880T C14408T C15738T G16786T G17278T C17766T T19449A C22916T A23403G G25440T GGG28881AAC G29734A G29868A

EPI_ISL_508260
 2020-06-18 2020-08-04
 India hCoV-19/India/GA66/2020
 A4- C241T C313T C3037T C5700A G10465A C14408T G15025T A23403G C25006T G28242T GGG28881AAC C29095T G29868A

EPI_ISL_508261
 2020-06-18 2020-08-04
 India hCoV-19/India/GA67/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A G10465A C14408T A23403G GGG28881AAC C29284T G29868A

EPI_ISL_508262
 2020-06-18 2020-08-04
 India hCoV-19/India/GA68/2020
 ATTAAAGGTTTATACCTTCCCA1- A26T C241T C313T C3037T C5700A C9693T G10465A C14408T A23403G GGG28881AAC C29614T G29868A

EPI_ISL_508263
 2020-06-18 2020-08-04
 India hCoV-19/India/GA69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C313T C3037T C5700A G12243A C14408T C21648T G22104C A23403G G23593T GGG28881AAC G29868A

EPI_ISL_508265
 2020-06-18 2020-08-04
 India hCoV-19/India/GA70/2020
 C241T C313T C3037T C5700A G12243A C14408T C21648T G22104C A23403G G23593T GGG28881AAC G29868A

EPI_ISL_508266
 2020-06-18 2020-08-04
 India hCoV-19/India/GA71/2020
 ATTA1- C241T C3037T C4423T C12053T C14408T A23403G G25088T G27214A C28507T GGG28881AAC G29868A

EPI_ISL_508267
 2020-06-18 2020-08-04
 India hCoV-19/India/GA73/2020
 ATTAAAGG1- T13- C15T C241T C313T C3037T G3230A C5700A C14408T T18358C G21724T G22708T A23403G GGG28881AAC G29868A

EPI_ISL_508268
 2020-06-18 2020-08-04
 India hCoV-19/India/GA74/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C313T C3037T C5700A C8480T G10465A C14408T G23282T A23403G G25690T GGG28881AAC G29868A

EPI_ISL_508269
 2020-06-18 2020-08-04
 India hCoV-19/India/GA75/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C313T C3037T C5700A G10465A C12499T C14408T A14421C A18902G G21974T A23403G G23587T G27463T GGG28881AAC G29868A

EPI_ISL_508270
 2020-06-18 2020-08-04
 India hCoV-19/India/GA76/2020
 ATTAA1- C241T C313T C3037T C5700A G10465A C12499T C14408T A14421C A18902G G21974T A23403G G23587T G27463T GGG28881AAC G29868A

EPI_ISL_508271
 2020-06-18 2020-08-04
 India hCoV-19/India/GA77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C313T C3037T C5700A G10465A C14408T A18902G G21974T A23403G G23587T GGG28881AAC G29868A

EPI_ISL_508272
 2020-06-18 2020-08-04
 India hCoV-19/India/GA78/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C245T C313T C3037T C5700A T11343C C12138T C14408T C21648T C21859T A23403G C23854T GGG28881AAC G29868A

EPI_ISL_508273
 2020-06-18 2020-08-04
 India hCoV-19/India/GA79/2020
 ATTA1- C21T C241T C313T C3037T C5700A C12138T C14408T C17762T C21648T C21859T A23403G C23854T GGG28881AAC G29868A

EPI_ISL_508275
 2020-06-18 2020-08-04
 India hCoV-19/India/GA80/2020
 A1- C241T C313T C3037T C5700A C8480T G8612T C10369T G10465A C14408T A23403G G25690T GGG28881AAC G29868A

EPI_ISL_508276
 2020-06-18 2020-08-04
 India hCoV-19/India/GA81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C5700A C14408T C19011T A23403G GGG28881AAC G29868A

EPI_ISL_508277
 2020-06-18 2020-08-04
 India hCoV-19/India/GA82/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C313T C3037T C5700A C14408T C19011T A23403G GGG28881AAC G29868A

EPI_ISL_508278
 2020-06-18 2020-08-04
 India hCoV-19/India/GA83/2020
 A4- C241T C313T C3037T C5700A G10465A C14408T A23403G G25690T GGG28881AAC G29868A

EPI_ISL_508279
 2020-06-18 2020-08-04
 India hCoV-19/India/GA84/2020
 ATTA1- C241T C313T C3037T C5700A G6443T A8689G G10465A G11335T C14408T G19348T A20236G A23403G C25413T G28371T GGG28881AAC G29868A

EPI_ISL_508280
 2020-06-18 2020-08-04
 India hCoV-19/India/GA85/2020
 ATTAAAGGTTTATACCTTCC1- C241T C313T C3037T C5700A C8480T G8612T C10369T G10465A C11668T C14408T C22388T A23403G G25690T GGG28881AAC G29868A

EPI_ISL_508281
 2020-06-18 2020-08-04
 India hCoV-19/India/GA86/2020
 A1- A4T C241T C313T C3037T C5700A A11947G C13620T C14408T C21648T A23403G G26727T G28109T GGG28881AAC G29864A G29868A

EPI_ISL_508292
 2020-06-18 2020-08-04
 India hCoV-19/India/IB14/2020
 A4- G5629T C6312A G11083T C13730T G17331T C23929T G26262T C28311T G29868A

EPI_ISL_508311
 2020-06-18 2020-08-04
 India hCoV-19/India/IB32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508333
 2020-06-18 2020-08-04
 India hCoV-19/India/IB6/2020
 ATTAAAGGTTTA1- C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508416
 2020-06-18 2020-08-04
 India hCoV-19/India/MN10/2020
 ATT1- C241T C313T C1572T C3037T C6681T C14408T T22016A A23403G C26111T T26171A GGG28881AAC G29868A

EPI_ISL_508417
 2020-06-18 2020-08-04
 India hCoV-19/India/MN11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C313T C1572T C3037T C6681T C14408T T22016A A23403G C26111T T26171A GGG28881AAC G29868A

EPI_ISL_508420
 2020-06-18 2020-08-04
 India hCoV-19/India/MN4/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T T1947C C3037T G5953A C14408T C18814T C18877T C19380T C22444T A23403G G23593T G25563T C26735T C28854T G29868A

EPI_ISL_508422
 2020-06-18 2020-08-04
 India hCoV-19/India/MN8/2020
 ATT1- C241T T1947C C3037T T4171C G4232T C14408T C18877T C18917T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_508724 MT834679
 2020-06-18 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0521/2020
 ATTA1- C241T A742G C3037T C14408T C23191T A23403G GGG28881AAC G29260T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_508725 MT834680
 2020-06-18 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0522/2020
 ATTAAAGGTTTA1- C241T A742G C3037T C14408T C23191T A23403G C24579T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509392
 2020-06-18 2020-08-05
 Singapore hCoV-19/Singapore/782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6312A C8139T G11083T C13019T C13730T C23929T G25049T G25740T G25769A C25844T C28311T G28436T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509636
 2020-06-18 2020-08-05
 Spain hCoV-19/Spain/COV005145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T C25710Y GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509819 MT846503
 2020-06-18 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C745T C1059T C3037T C11758T C14408T A23403G G25563T C25624T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_511832
 2020-06-18 2020-08-08
 United States hCoV-19/USA/CA-IGI-0078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11916T G12859A C14408T C18998T C21057T A23403G C24023T G25563T G25947C G29540A

EPI_ISL_511833
 2020-06-18 2020-08-08
 United States hCoV-19/USA/CA-IGI-0079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C2668T C3037T C14408T C17883T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_511934
 2020-06-18 2020-08-10
 India hCoV-19/India/GA72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C313T C3037T G5411T C5700A C12738T C14408T C14877T C15237T C21648T A23403G GGG28881AAC G29868A

EPI_ISL_512058 MT940449
 2020-06-18 2020-08-10
 India SARS-CoV-2/human/IND/GBRC324/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1302T C3037T A10323G C14408T G16078A A17959C C18877T C22444T G23311T A23403G G25563T C26228T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_512059 MT940451
 2020-06-18 2020-08-10
 India SARS-CoV-2/human/IND/GBRC325/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T G1820A C2836T C3037T G4300T C10138T C10449T C13862T C14408T C18877T A19779G C22444T A23403G C23525T G25563T C26735T C26907T C28854T G29179T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_512664
 2020-06-18 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T G3185A C5183T C14408T A20268G C21721T A23403G T25171C G28514C CGATC29750- CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_512665
 2020-06-18 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C5884T G8572T C10340T G10360A C14408T A23403G C24912T C28706T GGG28881AAC C29144T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_513774 MW036015
 2020-06-18 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2278/2020
 ATTAAAGGTTTATACCT1- T209W C241T G2258R C3037T G5539A C14408T A15820G G21468A T22555Y A23403G G25346R GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514581
 2020-06-18 2020-08-17
 India hCoV-19/India/GBRC341/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C5654T C12616T C14408T C18877T G21795T A23403G G25563T GTTA26158- C26735T C27476T G28881A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514582 MT941042
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC342a/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C304T C2836T C3037T C10889T C10969T C14408T A14788G C18877T C22444T A23403G C23625T G25563T C26735T C28087T C28854T ATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29752-

EPI_ISL_514583 MT941046
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC342b/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C304T C2836T C3037T C10889T C10969T C14408T A14788G C18877T C22444T A23403G C23625T G25563T C26735T C28854T ATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29752-

EPI_ISL_514584 MT941047
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC343a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T T3610C C12076T C14408T C17491T C18877T C22444T A23403G G25563T C26607T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514585 MT941052
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC343b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T1822C C2836T C3037T T3610C C12076T C14408T C17491T C18877T C22444T A23403G G25563T C26607T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514586 MT941055
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC344/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2836T C3037T C4206T C14408T C17766T C18877T C22444T A23403G G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514587 MT941056
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC345/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C8140T C14408T G16078A C18877T G18984T G21786T C22444T G23311T A23403G G25563T G25681T C26256T C26735T C28854T G29711T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514588 MT941059
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC346/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T C14408T C18877T C21516T C22077T C22444T A23403G G25563T C26735T C28854T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_514589 MT941060
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC347a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T C4901T C14408T C18877T G21724T C22444T A23403G G25563T C26735T C27005T C28854T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_514590 MT941061
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC347b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T C4901T G11521T C14408T C18877T G21724T C22444T A23403G G25563T C26735T C27005T C28854T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_514591 MT941067
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC348a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G362A C2836T C3037T C14408T C18877T G21724T C22444T G22468T A23403G A23632C G25563T C26735T G27762C C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514592
 2020-06-18 2020-08-17
 India hCoV-19/India/GBRC348b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T C14408T C18877T G21724T C22444T G22468T T23042C A23403G A23632C G25563T C26735T G27762C G28083T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514593 MT941272
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC349/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G C24865T G27358T G28845T C29546T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_514594 MT941274
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC350a/2020
 ATTAAAGGTTTATACCTTCCCA1- T25C -48A C241T C3037T G6349T C14408T G16078A C18877T C22444T G23311T A23403G G25437T G25563T C26607T C26735T G27703T C28087T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514595 MT941276
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC350b/2020
 ATTAAAGGTTTATACCTTCCCA1- T25C C241T C3037T G6349T C14408T G16078A A16661T A17871G C18877T A22259G C22444T G23311T A23403G G25437T G25563T C26607T C26735T G27703T C28087T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514596 MT941403
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC351a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C203T C241T C2836T C3037T C6573T T8983A C14408T C17410T C18388A C18877T T20196C C22444T A23403G G25563T C26735T C28854T C29718T TAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29811-

EPI_ISL_514597 MT950187
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC351b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C203T C241T C2836T C3037T C6573T C14408T C18877T C22444T A23403G G25563T C26735T C28854T TAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29811-

EPI_ISL_514598 MT950188
 2020-06-18 2020-08-17
 India SARS-CoV-2/human/IND/GBRC352a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C2836T C2910T C3037T C3817T T8910C C14408T C18877T A23403G G25563T C26735T C28854T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_514599
 2020-06-18 2020-08-17
 India hCoV-19/India/GBRC352b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T T8910C C14408T C18877T A23403G G25563T C26735T G28083T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_514929
 2020-06-18 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2526/2020
 ATTAAAGGTT1- C241T C1059T C3037T G4148T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514930
 2020-06-18 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T TCTTAGGAGAATG29856-

EPI_ISL_514932
 2020-06-18 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2529/2020
 ATT1- A6G C241T C1059T C3037T G4148T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T A29903-

EPI_ISL_514933
 2020-06-18 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T CTTCTTAGGAGAA29854- A29869T

EPI_ISL_514934
 2020-06-18 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2531/2020
 ATT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_514935
 2020-06-18 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_516425
 2020-06-18 2020-08-20
 North Macedonia hCoV-19/North Macedonia/3990/2020
 ATTAAA1- C241T C313T C3037T G6532T G8934A G14020A C14408T C19862T A23403G C26873T C28057T G28321T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_523210
 2020-06-18 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T C17304T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523350
 2020-06-18 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523601
 2020-06-18 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C622T C3037T G4657T T5182C C11758T C14408T C15324T G16846T C16887T A23403G C25075T C25904T C29733T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523620
 2020-06-18 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6446T G8179T C14408T C20930T A23403G T24214C G28812T GGG28881AAC A29763G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523621
 2020-06-18 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C622T C3037T G4657T T5182C C11758T C14408T C15324T G16846T C16887T A23403G C25075T C25904T C29733T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524713
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-362a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C7945T A10323G C14408T C17934A A23403G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524714
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-362b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C7945T C14408T C17934A A23403G C26735T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524715
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T G11389T C13720T C14408T C15141T C16575T C18877T G21724T C22444T A23403G G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524716
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-364a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T G2164T C2836T C3037T G8368A C14408T T14499G C18877T C22444T A23403G G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524717
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-364b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T G2164T C2836T C3037T C14408T T14499G C18877T C22444T A23403G G25563T C26735T G28083T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524718
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C6285T C12919T C14408T C17746T C18877T C22444T A23403G G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524719
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-366a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T C18877T A23403G G25563T C26058T C26735T G28851T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524720
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-366b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T C18877T A20262G T21543C A23403G G25563T G28851T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524721
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-367a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C3817T C14408T C18877T G21724T C22444T A23403G T24811A G25563T C26735T G28083T C28854T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_524722
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-367b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C3817T C14408T C18877T G21724T C22444T A23403G T24811A G25563T C26735T C28854T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_524725
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T A6058G T10297C C14408T C18877T C21057T A23403G G25563T C26735T G29742A ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_524726
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C12488T C13994T C14408T C18458T C18747T C18877T C20468T C22444T A23403G G25563T C26735T C27294T G28209T C28854T C29836T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524727
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T G1006T G2164T C2836T C3037T G8368A C11379T C14408T C18877T C22444T A23403G G25563T C26735T G28541T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524728
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- T111C C241T C2836T C3037T C14408T C18877T C22444T A23403G G25563T C26735T T27384C C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524729
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T C18877T A23403G G25563T C26735T G28975C G29706T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524737
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1102T C2836T C3037T C14408T C18877T C22444T A23403G G25500A G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524738
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C12710T C14183T C14408T C16111T C18877T G19348T G21724T C22444T A23403G G25563T G26051A C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524741
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C14408T C18877T T20994A C22444T A23403G G23663A C23997T G25563T C26735T C28854T T29335C C29835T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524742
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-383a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T T14501C C18877T T21582C C22444T A23403G C23997T T24811A G25563T C26735T C28854T TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807-

EPI_ISL_524743
 2020-06-18 2020-08-28
 India hCoV-19/India/GJ-GBRC-383b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T T10636A C14408T T14501C C18877T T21582C C22444T A23403G G23663A T24811A C26735T C26822T T27164G C28854T T29335C TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807-

EPI_ISL_525419
 2020-06-18 2020-08-29
 India hCoV-19/India/GJ-GBRC-382a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C14408T C18877T C22444T A23403G C23997T G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_525420
 2020-06-18 2020-08-29
 India hCoV-19/India/GJ-GBRC-382b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T T4477C C14408T G19681A C22444T A23403G G23663A G25563T C26735T T27164G C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_525700 MT946872
 2020-06-18 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C1684T C3037T C5822T C10138T C10645T C14408T A23403G C23673T G25552T G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_528678
 2020-06-18 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1084/2020
 ATTA1- C241T G640A A2127G C3037T C3397T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T C29870A

EPI_ISL_528679
 2020-06-18 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T T6691C C14408T A23403G G25563T C25614T G29736T C29870A

EPI_ISL_528681
 2020-06-18 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C619T C1059T C2523T C3037T C14408T A14912G C18864T A23403G G25563T C26447T G29868A C29870A

EPI_ISL_529073
 2020-06-18 2020-09-10
 Peru hCoV-19/Peru/CAL-UPCH-0036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G4657T C5907T C14408T C15277T G17632T A21917G A23403G C24130T C25872T A25948G A26530G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529076
 2020-06-18 2020-09-10
 Peru hCoV-19/Peru/LIM-UPCH-0039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C4002T G4510T T5566A G10097A C10156T C12854T C13536T C14408T A21131G A23403G C23731T GGG28881AAC TAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29826-

EPI_ISL_529239
 2020-06-18 2020-09-10
 United Kingdom hCoV-19/England/BIRM-61841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C337T C3037T C7869T C14408T C18877T G20940T A23403G G25354T G25563T A25744G C26060T C26735T G28209T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529912 MT992727
 2020-06-18 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1108/2020
 ATTA1- C241T C1059T C3037T C11866T C14408T A23403G G25563T C27925A C28290T C29870A

EPI_ISL_529914 MT992729
 2020-06-18 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1111/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C18998T A23403G G25563T G25947C G29540A

EPI_ISL_529919 MT992734
 2020-06-18 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C715T C1059T G1729A G1836A C3037T A10124G C11916T C14408T A23403G A23586G G25563T A29653G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_529921 MT992736
 2020-06-18 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C774T C1059T C3037T C14408T C16163T A23403G C23625T G25563T C28887T C29870A

EPI_ISL_534753
 2020-06-18 2020-09-14
 United Kingdom hCoV-19/England/LIVE-A982F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T C3037T C5339T C10319T C11750T A12180G C12559T C14408T C19488T TTA20423- C21575T G22661K A23403G GGG28881AAC C29870A

EPI_ISL_535278
 2020-06-18 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020134982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1288T C3037T C10156T C14408T C20555T C21772T A23403G G25563T

EPI_ISL_535280
 2020-06-18 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020134985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T TAG423- C1059T C1288T C3037T C10156T C14408T C17762T C20555T C21772T A23403G G25563T

EPI_ISL_535282
 2020-06-18 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020134990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C14408T C20555T C21772T A22101T A23403G G25563T C27635T C28775T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_535283
 2020-06-18 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020134991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C14408T C20555T C21772T A22101T A23403G G25563T C28775T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535288
 2020-06-18 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020135001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C14408T C20555T C21772T A22101T A23403G G23426T G25563T

EPI_ISL_535292
 2020-06-18 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020135005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C14408T C20555T C21772T A22101T A23403G G25563T

EPI_ISL_535295
 2020-06-18 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020135016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C14408T C20555T C21772T A22101T A23403G G24872T G25563T

EPI_ISL_537542
 2020-06-18 2020-09-16
 United States hCoV-19/USA/CA-UCLA-236/2020
 AT1- C241T C1059T C3037T C4993T C12896T A13169G C14408T A23403G G25563T T27384C C27964T G29751A GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_540931
 2020-06-18 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C4002T C6968T G10097A C13536T C14408T T20295C A23403G C23731T G25507A GGG28881AAC AGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29776-

EPI_ISL_540961
 2020-06-18 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C10202T C14115T C14408T T19839C C22450T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540964
 2020-06-18 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C4002T T7984C G10097A C12854T C13536T C14408T A21131G A23403G C23731T C28409T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_540973
 2020-06-18 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0095/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C4002T A8825G G10097A C13536T C14408T A23403G C23731T T25520C T27412G G27414A G27478T GGG28881AAC G29179T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_540992
 2020-06-18 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6347T A9377G C9808T C12053T C14408T A19298T C20719T A23403G C28706T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_542022
 2020-06-18 2020-09-23
 United States hCoV-19/USA/NMDOH-2020136739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T T8041C C14408T G22225T A23403G G25563T C28005T G29868A C29870A

EPI_ISL_543331
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8371T C10319T C14408T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543338
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543341
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12756T C14408T C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543343
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T8053C T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543346
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A4044C C10319T C14408T A18424G C20483T C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543354
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T T25689A C25721T C26455T G29372A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543364
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543368
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10626T C14408T C16859T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543371
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C14708T C17639T A23403G C26195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543372
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C A5431G C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543374
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14676T A23403G G25647T T27722C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543375
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1102T C3037T A7493G C14408T G20275T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543378
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4044C C14408T A18424G C20936T A23403G G25907T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543381
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1734T C3037T C14408T A23403G C23664T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543382
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C11979A C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543386
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543387
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543388
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C10790T C13487T C14408T C16260T T20331C C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543389
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543390
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G598T C1059T C3037T C14408T G18412T C23191T A23403G G25563T C28093T T29789C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543396
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C335T C3037T C14408T C16017T A23403G C24718A G25644T T27212C G27561T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543397
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543398
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6304G C14408T A23403G GGG28881AAC C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543399
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4927T C13168T C14408T C16163T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543400
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543401
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8905T C14408T A23403G A24389G G25563T G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543405
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T G11083T C14408T A18424G A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543406
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10626T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543407
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1836T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543409
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4890T C14408T T20769C C22444T G23224T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543415
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543416
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T19284C C21614T A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543419
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4276T C11916T T13914C C14408T C18998T C19186T A20541G A23403G G25563T G29449C G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543420
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T C2445T C3037T G12052T C14408T C19524T A23403G GGG28881AAC G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543455
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2102T C3037T A4480G C6606T C10188T G12332T C14408T A23403G T24982C G25563T C27964T T28981C G29392T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543460
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12756T C14408T C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543470
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C14408T A23403G G25088T G25563T C28890T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543471
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C190T C241T G2282A C3037T T9742C C10626T A12334G C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543474
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11083T G11464A C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543475
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543477
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6099T C10319T C14408T G14829T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543478
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G3004T C3037T A3933G C14408T C14676T A23403G G25647T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543479
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6099T C10319T C14408T G14829T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543486
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1307G C3037T G13975T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543487
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6843T C10319T C14408T G16014A T17353C C23315T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543490
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5416T C10279T T10800C C14408T A14747G A20755C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543491
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12756T C14408T C20474T A23403G C23481T G25660T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543493
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1836T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543494
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T19284C A22206G A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543495
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3872G C4890T C5055T C14408T T20769C C22444T G23224T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543498
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1820A C3037T C14408T G15452T G17151T C21648T A23403G G25563T C26789T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543502
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543504
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4510T C7420T G7798T T11134C C14408T A18535G C19011T T23245G A23403G G25819A C26681T T27499C GGG28881AAC G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543506
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T T13794C C14178A C14408T T17142C C18998T A23403G A23947G G25563T C26469G G26828T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543507
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C527T C1059T C3037T C8357T C14408T T16425G A23403G A25104G G25563T G28908T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543509
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1734T C3037T C14408T A18702C A23403G C23664T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543511
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T C2445T C3037T G12052T C14408T C19524T T21640C A23403G GGG28881AAC G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543512
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543513
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C G2118A C3037T G3871T T3931C C4965A G11083T C14408T C22323T A23403G A27759G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543515
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1820A C3037T A3297G C14408T G15452T G17151T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543518
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C335T C3037T C12325T C14408T C16017T A23403G A24710G C24718A T27212C G27561T A29299G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543519
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12756T C14408T C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543521
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A C14408T A19433T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543524
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6099T C10319T C14408T G14829T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543527
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3498T A12446G G13858T C14408T C18877T C21707T A23403G A24170G G25563T A25980G C29409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543529
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1061C C3037T T6372C C7420T A11983G C14408T A23403G G25563T C27964T G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543534
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T G625T C1059T C3037T C14408T C15342T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543537
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6255T C9967T C13860T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543541
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T A2251G C3037T T5290C C14408T G15093A T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543567
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C335T C3037T C14408T C16017T A23403G C24718A G25644T T27212C G27561T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543635
 2020-06-18 2020-09-23
 United States hCoV-19/USA/TX-HMH-4458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T C28603T G28842T C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544573
 2020-06-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-5167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2102T C3037T C6606T C6636T C10188T G12332T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544905
 2020-06-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-5616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A A2568G C3037T C8752T T9742C C14408T C17639T G20578T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544915
 2020-06-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-5629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6843T C10319T C14408T G16014A T17353C C23315T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546070
 2020-06-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-6544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2618G C3037T C7945T C8092T C14408T C14786T C15540T G18948T C20474T C21597T G23311T A23403G T26490G T27863C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546955
 2020-06-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-5703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546991
 2020-06-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-5755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547002
 2020-06-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-5770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11464A C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547182
 2020-06-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-6036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12756T C14408T C20474T A23403G C23481T G25660T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547359
 2020-06-18 2020-09-24
 United States hCoV-19/USA/TX-HMH-6276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4810A C14408T C18486T A20268G T22162C A23403G C28854T G29688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553360
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95D205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25587T C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553383
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95D1EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553396
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C93E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4328G A8072G C11919T C14408T T18909C A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553419
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C9A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2334Y C3037T C14408T A23403G C23673Y T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553474
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CA3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T G6337K C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553484
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95D0B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553513
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95D180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553533
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95D153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C G20623T T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553535
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C96B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11572T C14408T A23403G G25244T G28857T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553556
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95D0DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553566
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95D0CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553599
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CA4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T G6337T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553609
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95D135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553617
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-95CC71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553827
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-9543B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C775T C920Y C3037T C9438T C14408T G21160A A23403G G26730K GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554438
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-953FF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T A9433T G10265A C14265Y C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554911
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D5A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16394T C21637T A23403G C26607Y A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554917
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CFE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C22498T A23403G C26801T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554942
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CF69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16828C C17012T A23403G C25672T C27434T G27506T T27555C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554989
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95D029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1910G C3037T G3514T C8311T G10097A A11991G T12184C C14408T A17615G A23403G C23731T C25000T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555002
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D7CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T G8371T G11083T C14408T C17746T G19962T C22477T A23403G G25563T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555009
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95AA79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3109K C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555044
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D5D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16394T C21637T A23403G G28077T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555085
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EA96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555088
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CFF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1910G C3037T G3514T C8311T G10097A A11991G T12184C C14408T A17615G A23403G C23731T C25000T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555117
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95D01A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555130
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C18568T A19650G A23403G C27577Y C28253Y C28603Y GGG28881AAC C29732Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555137
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9506D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8097A C14408T C16859T A23403G A26612G C27476T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555139
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9500DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C10626T C14408T G15438T C19164T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555143
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95035A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A T6637C G11083T C14408T A20268G C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555153
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C875T C3037T T5507A T6637C G11083T C14408T A20268G C21614T A23403G C26768T C26985Y C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555160
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C10854T C13335T C14408T A20268G A23403G C28854T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555162
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9506BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2061Y C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555171
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FA59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C12651T C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555172
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1825T C3037T A4894C C11674T A14266G C14408T C15960T A23403G A23416T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555189
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T C4540T C9073T T10278G C14408T A23403G G26951T GGG28881AAC CTA28896- T29760C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555201
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95031E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A T6637C G11083T C14408T A20268G C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555207
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T G10097A C14408T A19946G A23403G C23731T G24193C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555211
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A655G C3037T C3157T C11902T C12923T C14408T C21575T A23403G G23426R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555214
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555228
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95033C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C13115T C14408T G14428T A23403G C25553T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555233
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9505DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C19454T T23255C A23403G G27572T A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555240
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95069D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T G4642A G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555244
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555251
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E6FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A C20555Y A23403G C24378T GGG28881AAC G28985T T29568C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555252
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95032D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C13115T C14408T G14428T A23403G C25553T GGG28881AAC G29474T T29793Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555263
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9500CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C10626T C14408T G15438T C19164T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555269
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555283
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555307
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E36E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T G1946T C3037T A3569G A6211G A8659G C14408T T18438C C19488T A23403G G23417K C26681T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555311
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-950660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T G22014T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555524
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DC37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C4002T G10097A G10877A C13536T C14408T A23403G C23731T C27509T C28542T GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555552
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D95E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T T4714C G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555576
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DC55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3085K C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555627
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555629
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DB3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555672
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D97C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555682
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DC46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G A11822R A13319G C14408T C15752T C18877T A23403G G24197T G25563T T26066C C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555726
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94D912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G C24130T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555764
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F7F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555834
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D0E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555846
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F41F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G C25658T C25904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555859
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F29D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3177T C3622T G4510T C14408T G19481T A23403G G25654T C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555870
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3177T C3622T G4510T A11782R C14408T G19481T A23403G G25654T C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555881
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F60A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555884
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94F585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1385T C3037T C9438T C14408T A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555892
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G25912T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555894
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F4E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C11919T C14408T A23403G A25243G C25919T C26801T C28006T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555897
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94C834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4396G C6633T C14408T C15546T G17443T G18677T A23403G G23429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555924
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C12242M C14408T A15647C A19182G A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555958
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94CD53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GGG28881AAC C29203T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555960
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G T28494C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555969
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A15647C A19182G A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555979
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F2CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3177T C3622T G4510T C14408T G19481T A23403G G25654T C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555984
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F2AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101Y C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555995
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94F594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556006
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556015
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F44C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556019
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F51C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556020
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C10626T C14408T G15438T C19164T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556031
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F53A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G11083T C14408T G18859T G21624T A23403G C25350T G25654T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556045
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F5EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A15647C A19182G A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556064
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F3E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A T12874C C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556187
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-95DBFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4076A C10015T C12923T C14408T C18877T T22165C A23403G C24771T GAA25437- G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556199
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-95DBEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8644C C14408T A17943G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556340
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2164A C3037T T9519G C14408T C22290T A23403G C27294T TTTTGCTTGTCCTGACGGCGTAAAACACGTCTA27585- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556373
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13701C C14408T G18994T A23403G C23896Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556377
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1800A C3037T C5000T C14408T A23403G C23854T G25972A G27842T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556396
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F0A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556438
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F46A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T C18828T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556449
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F0C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558076
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-649463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558425
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D4C84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1399G C1613T C2416T C3037T C5974T G8371T G11083T C12008Y C14408T T18603C C22477T A23403G G25563T G28378C G28878A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558453
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CB215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T G13520T C14408T T15978C T20109C A23403G G24095T G27967T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558465
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D52BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T TAAAAATTA6516- G10265A T13794G C14408T A23403G T28494C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558468
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CBAE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C8809T C14408T T19839C C19895T A23403G GTT26155- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558473
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CE1BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558491
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C936F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T G13520T C14408T T15978C A23403G C27925T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558494
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C5837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A15647C C17958T A19182G A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558504
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C961B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T G13520T C14408T T15978C A23403G C27925T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558517
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C4FBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4510T C7851T G10097A C14408T C14708T C18131T C19170T A23403G C23731T T23849C T26442C G28077T G28580T C28744T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558549
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D5360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26918T GGG28881AAC G29290A T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558584
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CC8B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T G11083T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558587
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-5C49BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C13297T C14408T T19839C A23403G G24586T C25275T G25552T C28253Y GGG28881AAC C29274Y T29607C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558589
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C606B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558606
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CB8B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1314T C2676T C3037T C4582T G8540A C14408T A19782T A23403G GGG28881AAC G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558618
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C3ECE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10479G C13860T C14408T A23403G G26849T GGG28881AAC A28911T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558663
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B49DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558703
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5ACD82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T358W C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558711
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B4042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4779C T8631C C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558718
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B4938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C12473Y C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558743
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5BFE5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558749
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5ACB6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A T6637C G11083T C14408T T17124C A20268G C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558768
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AC942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8650T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558795
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B94F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A15647C A19182G A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558839
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AFBFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558855
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5BCB94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1941C C3037T C14408T C16289T A23403G G25429T C26681T A29385G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558890
 2020-06-18 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B1959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C3037T C6195T C10969T G11083T C14408T T17568C A18579G A23403G GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560566
 2020-06-18 2020-09-29
 United States hCoV-19/USA/AK-PHL534/2020
 ATTAAAGGTTT1- C241T T409C C3037T C14408T G14500T A20288G G20615C C21622T C21721T A23403G C26894T C28638A GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_566053
 2020-06-18 2020-10-01
 United Kingdom hCoV-19/England/202580750/2020
 ATTAAAGGTTTATACC1- C241T A435G C1437T T2053A C3037T C8950Y C14408T A23403G GGG28881AAC G29745T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_566082
 2020-06-18 2020-10-01
 Russia hCoV-19/Russia/MOW-RII-MH255S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C9050T C13356T C14408T A23403G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_566083
 2020-06-18 2020-10-01
 Russia hCoV-19/Russia/MOW-RII-MH256S/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C3373A C6883T T11078C C13059T C14408T T16211G C16215A G21724A A23403G A26555G C28606T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_568513
 2020-06-18 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C8895T T9710C G10265A C14408T G19800T A23403G C25916T GGG28881AAC C29625T AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_568517
 2020-06-18 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T A2261G C3037T C4002T G5230T G10097A C13536T C14408T C14877T C15654T G16935T C18557T T20988C A23403G C23731T G24834T GGG28881AAC TGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29691-

MT731653
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_118a/2020
 C241T C1190T C2040T C2388T C3037T C10252T G13812T C14408T G19723T A23403G GGG28881AAC

MT731654
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_155/2020
 C241T A1163T C2040T C2388T C3037T A3456G C14408T G19723T A23403G T24685C C25584T G26051A A28305G GGG28881AAC

MT731655
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_156/2020
 C241T C527T A1163T C1190T C3037T A4104G C14408T A23403G GGG28881AAC

MT731656
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_158/2020
 C241T C683T C2836T C3037T T3836A G4504T C14408T C14708T C18877T C22444T C23114A A23403G G25563T C26735T C28854T

MT731657
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_160/2020
 C241T A1163T C2040T C2388T C3037T C5869T C14408T G19723T A23403G C27707T GGG28881AAC

MT731658
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_168/2020
 C241T A1163T C3037T T9016C C14408T A16275G A23403G T26726A GGG28881AAC

MT731659
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_172/2020
 C241T A1163T C3037T C3961T G12170A C12473T C14408T C22326T A23403G GGG28881AAC

MT731660
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_173/2020
 C241T A1163T C2910T C3037T C3961T G5950T G13201T C14408T C22858T A23403G C27389T GGG28881AAC G29254T

MT731733
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_133/2020
 C241T A1163T C3037T C14408T G15260T A23403G G26268T GGG28881AAC

MT731734
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_135/2020
 C241T A1163T C3037T G10618T C12415T C14408T C14889T A23403G GGG28881AAC

MT731735
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_137/2020
 C241T A1163T C3037T C6813T G11083T A12061G C14408T A23403G GGG28881AAC

MT731736
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_138/2020
 C241T A1163T C3037T C14408T G15260T A23403G GGG28881AAC

MT731737
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_139/2020
 C241T A1163T C2395T C2470T C3037T A13712G C14408T A23403G GGG28881AAC

MT731931
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_130/2020
 C241T C3037T C10252T G13812T C14408T G19723T A23403G GGG28881AAC

MT731932
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_131/2020
 C241T C2388T C3037T C10252T G13812T C14408T G19723T A23403G GGG28881AAC

MT731933
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_132/2020
 C241T A1163T C2388T C3037T C14408T A23403G A23586G GGG28881AAC

MT731934
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_141/2020
 C241T A1163T C3037T C14408T C16830T A23403G GGG28881AAC

MT731935
 2020-06-18 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_144/2020
 C241T A1163T C2388T C3037T C10198T C14408T A23403G G25644T TTA26159- GGG28881AAC G28960T

MT740381
 2020-06-18 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_145/2020
 C241T A1163T C3037T C3784T C6807T C14408T T21760C A23403G C25416T GGG28881AAC

MT740382
 2020-06-18 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_146/2020
 C241T A1163T C3037T C14408T A17645G A23403G GGG28881AAC

MT740390
 2020-06-18 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_149/2020
 C241T A1163T C2388T C3037T C4113T C14408T T16828C G19723T A23403G C27707T GGG28881AAC

MT740391
 2020-06-18 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_154/2020
 C241T C3037T C14408T C21595T A23403G GGG28881AAC

MT740392
 2020-06-18 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_184/2020
 C241T A1163T C3037T G3250T G11330T C14408T A23403G G25534T C25710T GGG28881AAC

MT740393
 2020-06-18 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_187/2020
 G199T C241T A1163T C3037T C6990T A8026G C9502T G11083T C14408T A23403G C26895T GGG28881AAC

MT740394
 2020-06-18 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_150/2020
 C241T A1163T C3037T C14408T C19813T G21786T A23403G G23909T C24378T GGG28881AAC

MT740395
 2020-06-18 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_151/2020
 C241T A1163T T1651C C3037T C7165T C14408T G18255T A23403G C25603T T26551C GGG28881AAC

MT740401
 2020-06-18 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_152/2020
 C241T A1163T C3037T A3456G C14408T A23403G T24685C G26051A C28171T A28305G GGG28881AAC

MT740402
 2020-06-18 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_153/2020
 C241T A1163T C3037T T9016C C14408T A16275G A23403G T26726A GGG28881AAC

MT810590
 2020-06-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1110-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810596
 2020-06-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1116-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C18486T A20268G T22162C A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811525
 2020-06-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1093-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811527
 2020-06-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1095-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G11083T C12488T C14408T A23403G C25528T G27084A GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811528
 2020-06-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1096-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C4021T C6781T C6927T C11916T C13133T C14408T G16935T C19185T A23403G C26900T T27900A GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811529
 2020-06-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1097-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1191T C3037T C4455T C7768T C11575T C14408T G15535T A20268G A23403G T26100A T27438C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811533
 2020-06-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1102-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1627T C3037T C9430T C14408T C14925T G19969A A20268G A23403G C24031T G28001C T28251G CA28253TC C28744T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811534
 2020-06-18 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1104-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T C3037T C7768T C11575T C14408T A20268G A23403G G27461T A28225G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT919529
 2020-06-18 2020-08-22
 Denmark SARS-CoV-2/mink/DK/AD38_Farm2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15656T A22920T A23403G C25936T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT950532
 2020-06-18 2020-09-02
 India SARS-CoV-2/human/IND/GBRC-362a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C7945T A10323G C14408T C17934A A23403G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT950684
 2020-06-18 2020-09-02
 India SARS-CoV-2/human/IND/GBRC-362b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C7945T C14408T C17934A A23403G C26735T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT950725
 2020-06-18 2020-09-02
 India SARS-CoV-2/human/IND/GBRC-363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T G11389T C13720T C14408T C15141T C16575T C18877T G21724T C22444T A23403G G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT950761
 2020-06-18 2020-09-02
 India SARS-CoV-2/human/IND/GBRC-364a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T G2164T C2836T C3037T G8368A C14408T T14499G C18877T C22444T A23403G G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT951157
 2020-06-18 2020-09-02
 India SARS-CoV-2/human/IND/GBRC-365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C6285T C12919T C14408T C17746T C18877T C22444T A23403G G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT951170
 2020-06-18 2020-09-02
 India SARS-CoV-2/human/IND/GBRC-366a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T C18877T A23403G G25563T C26058T C26735T G28851T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT951177
 2020-06-18 2020-09-02
 India SARS-CoV-2/human/IND/GBRC-366b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T C18877T A20262G T21543C A23403G G25563T G28851T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT951181
 2020-06-18 2020-09-02
 India SARS-CoV-2/human/IND/GBRC-367b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C3817T C14408T C18877T G21724T C22444T A23403G T24811A G25563T C26735T C28854T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

MT951208
 2020-06-18 2020-09-02
 India SARS-CoV-2/human/IND/GBRC-369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T A6058G T10297C C14408T C18877T C21057T A23403G G25563T C26735T G29742A ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

MT953868
 2020-06-18 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T G1006T G2164T C2836T C3037T G8368A C11379T C14408T C18877T C22444T A23403G G25563T C26735T G28541T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT953874
 2020-06-18 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- T111C C241T C2836T C3037T C14408T C18877T C22444T A23403G G25563T C26735T T27384C C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT953875
 2020-06-18 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C14408T C18877T A23403G G25563T C26735T G28975C G29706T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT953894
 2020-06-18 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C1102T C2836T C3037T C14408T C18877T C22444T A23403G G25500A G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT953895
 2020-06-18 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C12710T C14183T C14408T C16111T C18877T G19348T G21724T C22444T A23403G G25563T G26051A C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT953925
 2020-06-18 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C14408T C18877T T20994A C22444T A23403G G23663A C23997T G25563T C26735T C28854T T29335C C29835T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT953978
 2020-06-18 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-382b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T T4477C C14408T G19681A C22444T A23403G G23663A G25563T C26735T T27164G C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT953980
 2020-06-18 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-383a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T T14501C C18877T T21582C C22444T A23403G C23997T T24811A G25563T C26735T C28854T TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807-

MT953981
 2020-06-18 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-383b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T T10636A C14408T T14501C C18877T T21582C C22444T A23403G G23663A T24811A C26735T C26822T T27164G C28854T T29335C TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807-

MT965769
 2020-06-18 2020-09-04
 India SARS-CoV-2/human/IND/GBRC-382a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C14408T C18877T C22444T A23403G C23997T G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MW006569
 2020-06-18 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020134982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1288T C3037T C10156T C14408T C20555T C21772T A23403G G25563T

MW006571
 2020-06-18 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020134985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T TAG423- C1059T C1288T C3037T C10156T C14408T C17762T C20555T C21772T A23403G G25563T

MW006573
 2020-06-18 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020134990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C14408T C20555T C21772T A22101T A23403G G25563T C27635T C28775T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MW006574
 2020-06-18 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020134991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C14408T C20555T C21772T A22101T A23403G G25563T C28775T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MW006579
 2020-06-18 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020135001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C14408T C20555T C21772T A22101T A23403G G23426T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MW006583
 2020-06-18 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020135005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C14408T C20555T C21772T A22101T A23403G G25563T

MW006586
 2020-06-18 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020135016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C14408T C20555T C21772T A22101T A23403G G24872T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_476018
 2020-06-19 2020-06-25
 United States hCoV-19/USA/MO-WUSTL070/2020
 ATTAAAGGTTTAT1- C241T G252T C3037T C6861T C14408T C19170T G19509A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_476019
 2020-06-19 2020-06-25
 United States hCoV-19/USA/MO-WUSTL066/2020
 -2AGCACACTTTCCTCGTGAAGGTGTCTTTGTTTCAAATGGCACACACTGGTTTGTAACACAAAGGAA -4TTTA C241T C3037T A11425G C14408T A23403G G25687A G26158T C28115T C29523T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874C

EPI_ISL_476020
 2020-06-19 2020-06-25
 United States hCoV-19/USA/MO-WUSTL065/2020
 A1TTATATGGAAGAGCCCTAATGTGTAAAA -5ATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTT C241T T833C C1059T C3037T -11075TTTTTT C14408T A23403G G25290T G25563T C27964T A29882G AAAA29885CTGC A29891G AA29893TC A29896T AA29899TG -29904CTTGTCA

EPI_ISL_476021
 2020-06-19 2020-06-25
 United States hCoV-19/USA/MO-WUSTL032/2020
 ATTAAAGGTTT1- C241T C3037T C8311T C14408T T15264C A23403G C26873T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874C

EPI_ISL_480728 MT745698
 2020-06-19 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2129/2020
 G1397A A7903G C8290T -11075TTT G11083T G20887A C21627T G22100A C24919T C25924T T28688C C28830T G29742T G29781T

EPI_ISL_480729 MT745699
 2020-06-19 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2130/2020
 C241T C3037T C14408T A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_480731 MT745701
 2020-06-19 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2133/2020
 C241T A1163T C3037T T7540C C14183Y C14408T G16647T C18555T G22992A G23401A A23403G C23520Y GGG28881AAC

EPI_ISL_480733 MT745703
 2020-06-19 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2135/2020
 C241T A1163T C3037T T7540C G11083K C14183Y C14408T G16204R G16647T C18555T G22992A G23401A A23403G G25650K GGG28881AAC

EPI_ISL_480734 MT745704
 2020-06-19 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2125/2020
 G1397A A7903G C8290T -11075TTT G11083T G20887A C21627T G22100A C24919T C25924T T28688C C28830T G29742T G29781T

EPI_ISL_480736 MT745706
 2020-06-19 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2127/2020
 C241T A1163T A2251R C3037T T7540C C14408T C16247T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_480743 MT745713
 2020-06-19 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2142/2020
 C241T C3037T G3250T G3728T C5301Y T8737C C14408T C18877T A23403G G25563T C26735T C28657T G28975T C29274T

EPI_ISL_480771 MT745739
 2020-06-19 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2164/2020
 C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC G29402K

EPI_ISL_483480
 2020-06-19 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1044-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2143T C3037T T3144C C7768T C11575T A14041G C14408T A20268G A23403G A24777T C28854T

EPI_ISL_483521
 2020-06-19 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1094-SAN/2020
 ATTA1- G208T C241T C3037T G11083T C14408T A20268G A23403G G23522A A25747C C28854T

EPI_ISL_483582
 2020-06-19 2020-07-08
 Singapore hCoV-19/Singapore/559/2020
 ATTAAAG1- A3951G C6310A C6312A A8363W G9500A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T AAAAAAAAAAAA29892-

EPI_ISL_483827 MT740483
 2020-06-19 2020-07-08
 India SARS-CoV-2/human/IND/GBRC246/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1225T G2309T C3037T G6094T C14408T C16575T T17589A C19017T A23403G G25459T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_483828 MT740485
 2020-06-19 2020-07-08
 India SARS-CoV-2/human/IND/GBRC247/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T C6402T C13584T C14408T C16323T C18877T C22444T A23403G G25552T G25563T C26735T C26907T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_483893
 2020-06-19 2020-07-08
 United Kingdom hCoV-19/England/BIRM-60833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T G10097A G10540T C14408T A19946G A23403G C23731T G24193C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484381
 2020-06-19 2020-07-08
 United Kingdom hCoV-19/England/NOTT-112459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484460
 2020-06-19 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C5D1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484474
 2020-06-19 2020-07-08
 United Kingdom hCoV-19/England/SHEF-C8945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T C3817T A8821G A13319G C14408T C15752T C18877T A23403G G24197T G25563T C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484494
 2020-06-19 2020-07-08
 United Kingdom hCoV-19/England/SHEF-CB53F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4548G C11479T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484818 MT750030
 2020-06-19 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C12880T C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484947 MT750151
 2020-06-19 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAAGTC685- C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484948 MT750152
 2020-06-19 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T A23403G G25563T G27147T C27964T C28708T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484951 MT750155
 2020-06-19 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C G11083T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484961 MT750165
 2020-06-19 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C12880T C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484964 MT750168
 2020-06-19 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6627T C11379T C12921T C14408T T15354C C18877T A21852C A23403G G25563T C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484966 MT750170
 2020-06-19 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C12880T C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486505 LR860615
 2020-06-19 2020-07-10
 Switzerland hCoV-19/Switzerland/160008_441_A12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T G3731R A9876W C14408T A16210W A16216M A16218M T16401W T17675Y C19524T G22205C A23403G C25731T GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486507 LR860620
 2020-06-19 2020-07-10
 Switzerland hCoV-19/Switzerland/160010_442_H06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G94T C241T C3037T C5365T T7035W C13708A C14408T T20172K C20233T C21057Y C22210T A23403G G28003T GGG28881AAC G29540K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_487314
 2020-06-19 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G10097A C12513T C13536T C14408T C18747T A23403G C23731T C27600T C28831T GGG28881AAC G29425T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_487324
 2020-06-19 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0373/2020
 AT1- C241T T2029C C3037T C14408T C16376T A23403G C24034T G25699T G28632T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489914
 2020-06-19 2020-07-14
 United States hCoV-19/USA/WI-GMF-06932/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490338
 2020-06-19 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A17B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C9491Y C14408T C16616T G17259T T18159G C21575T C22498T A23403G GGG28881AAC C29614T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_490339
 2020-06-19 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A17EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A489G C3037T T5465C G6387A C14408T G21624T A23403G G24102A C24138T AA25800TT G28003T GGG28881AAC

EPI_ISL_490845
 2020-06-19 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-16619B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C2638T C3037T C14408T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_492074 MT856691
 2020-06-19 2020-07-19
 United States SARS-CoV-2/human/USA/SC-USC-PH00769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A4034G C10156T A10972C C14408T C16349T C21110T A23403G G25563T G25906T C27964T G29781C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493069
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL031/2020
 A610T C8782T G11327T A21768G T28144C

EPI_ISL_493070
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL034/2020
 C3037T C14408T G25049T

EPI_ISL_493071
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL036/2020
 C241T C3037T C14408T A15005T C18175T A23403G G25563T

EPI_ISL_493072
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL037/2020
 C241T C3037T C18060T G18268T C19586T A23403G T28144C

EPI_ISL_493073
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL042/2020
 C241T C3037T C14408T A23403G G26158T

EPI_ISL_493074
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL043/2020
 C241T C3037T C14408T A23403G G26158T C29358T

EPI_ISL_493075
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL046/2020
 C241T G252T C3037T C6861T T11015C C14408T G19509A A23403G

EPI_ISL_493076
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL047/2020
 C241T C3037T A23403G G25563T C28112T

EPI_ISL_493077
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL050/2020
 C241T C3037T A8307G G14055T C14408T A23403G

EPI_ISL_493078
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL055/2020
 C241T C3037T C5497T C10851T C14408T C18175T A23403G G25563T TGTAGTTGATGACCCGTGTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGG27986-

EPI_ISL_493079
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL060/2020
 C241T T833C C1059T C3037T C14408T G22927T A23403G G25563T C27964T

EPI_ISL_493080
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL061/2020
 C3037T A6028T C8782T C11003T C18060T C23606T T28144C

EPI_ISL_493081
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL062/2020
 C241T C3037T C14408T C19819T A23403G G26158T C28115T

EPI_ISL_493082
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL063/2020
 C241T C3037T T11713C A23403G G26158T C28115T

EPI_ISL_493083
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL064/2020
 C8782T G12328C T28144C

EPI_ISL_493084
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL067/2020
 C241T C3037T G20881C A23403G

EPI_ISL_493085
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL068/2020
 C241T G3259T C10626T C14408T A23403G G25563T G26550A C27964T G28851C A29790-

EPI_ISL_493086
 2020-06-19 2020-07-20
 United States hCoV-19/USA/MO-WUSTL069/2020
 T6064C T6348C C8782T G13295C ACTAATTCTCCTCGGCGGGCACGTAGTGTAGCTAGT23594- T28144C T28853A -29812A

EPI_ISL_493702
 2020-06-19 2020-07-21
 United Kingdom hCoV-19/England/SHEF-CB6F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494065
 2020-06-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T A1547W C3037T C9438T C14408T A23403G GTT26155- GGG28881AAC G29777T AAAAAAA29897-

EPI_ISL_494085
 2020-06-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166B42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T T4696C C6541T C9438T C14408T A23403G GTT26155- GGG28881AAC G29777T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494108
 2020-06-19 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166D4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A489G C3037T T5465C G6387A C12623T C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_495063 MT800994
 2020-06-19 2020-07-22
 India SARS-CoV-2/human/IND/GBRC310a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2292C C2836T C3037T G4300T C14408T A16512G C18568T C18877T G21724T C22444T A23403G G25563T C26735T C28854T C29750T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_495064 MT800978
 2020-06-19 2020-07-22
 India SARS-CoV-2/human/IND/GBRC310b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2836T C3037T C16323T C18877T C19154T C22444T A23403G G25563T C26735T C28854T C29750T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_497209 MT831666
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2577/2020
 AT1- C241T T2077C C3037T G8075A A10874G A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497216 MT831754
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2584/2020
 ATTAAAGGTTTATAC1- C241T G2527T C3037T C4780T C7428T C14408T A20268G C20719T G22813A A23403G C26527T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497217 MT831537
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2585/2020
 AT1- C241T C3037T T8559A G8561A T10190C C10507T C14408T C19145T T19839C A23403G G25563C C28256T AG28877TC GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497218 MT831787
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2586/2020
 C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497236 MT831800
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2604/2020
 C241T C3037T C14408T C15933T G16377T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_497244 MT831603
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2612/2020
 A1- C241T C3037T C13994T C14408T C15933T G16968T T19839C A20055G C21859T A23403G G25691T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497246 MT831731
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2614/2020
 ATTAAAG1- C241T C3037T C3992T G4510T C5284T T12722C C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497247 MT831533
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2615/2020
 A1- C241T C3037T C4534T G8075A G10996T C11956T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497248 MT831714
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2616/2020
 AT1- C241T C3037T G3452A C3992T G4510T C8311T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497250 MT831824
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2618/2020
 ATTAAAGGTTTAT1- C241T C1204T G1747A C3037T G3340T C5643T C5730T C14408T C16289T C18570T A23403G G25429T C26527T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497251 MT831780
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2619/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497252 MT831564
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2620/2020
 AT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T C17747T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497253 MT831565
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2621/2020
 AT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T C17747T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497254 MT831607
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2622/2020
 ATTAAA1- C241T C3037T C10292A C14408T C14768T C15933T G16968T C17747T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497255 MT831572
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2623/2020
 AT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T C17747T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_497256 MT831547
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2624/2020
 A1- C241T C3037T C10292A C14408T C14768T C15933T G16968T C17747T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497257 MT831545
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2625/2020
 C241T C3037T C10292A C14408T C14768T C15933T G16968T C17747T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497258 MT831555
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2626/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T C17747T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497299 MT831700
 2020-06-19 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2667/2020
 AT1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G14874T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_508287
 2020-06-19 2020-08-04
 India hCoV-19/India/IB1/2020
 C241T C1218T C3037T C8917T A9634T C14408T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508329
 2020-06-19 2020-08-04
 India hCoV-19/India/IB51/2020
 ATTA1- A1846G C6312A G11083T C13730T T16732G C23929T C28311T A29866G

EPI_ISL_508337
 2020-06-19 2020-08-04
 India hCoV-19/India/IB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1218T C3037T C4795T C8917T C14408T G19518C A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508498
 2020-06-19 2020-08-04
 India hCoV-19/India/TF24/2020
 ATT1- G7T A12- G2659T C6312A G11083T C13730T C21145T C23929T G25677T C26885T G27382T C28311T T28823C G29868A

EPI_ISL_508499
 2020-06-19 2020-08-04
 India hCoV-19/India/TF25/2020
 A4- C241T C1670T T1947C C3037T C4560T C14408T G14718A C18877T C22444T A23403G G25563T G26452T C26735T C28854T G29868A

EPI_ISL_508726 MT834681
 2020-06-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3828T C4456T G8131T C14408T C18647T G21204T A23403G C25916T T27299C GGG28881AAC T29148C C29769T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_508727 MT834682
 2020-06-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0524/2020
 ATTA1- C241T C1059T C3037T C10319T C14408T G16710T C16733T G20176T A23403G A25121T G25563T C27964T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_508729 MT834684
 2020-06-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3828T C4456T G8131T C14408T C18647T G21204T A23403G C25916T T27299C GGG28881AAC T29148C C29769T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508730 MT834685
 2020-06-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0527/2020
 ATT1- C241T C3037T C3828T C4456T G8131T C14408T C18647T G21204T A23403G C25916T T27299C GGG28881AAC T29148C C29769T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_508731 MT834686
 2020-06-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T A23403G G25563T C28087T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_508732 MT834687
 2020-06-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0529/2020
 AT1- C241T C1059T C3037T C9940T C14408T A23403G G25563T C27509T C27964T C28893T G28899A C29420T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_508733 MT834688
 2020-06-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C20703T C21707T A23403G G25563T C28087T G29332T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_508734 MT834689
 2020-06-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0531/2020
 ATTAAA1- C241T C1059T C3037T C4276T C11916T T13914C C14408T C18998T C19186T A23403G G25563T G28842A G29540A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_508735 MT834690
 2020-06-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0532/2020
 ATT1- C241T C3037T C14408T T22843C A23403G C25680T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_508736 MT834691
 2020-06-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0533/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T T22843C A23403G C25680T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_508737 MT834692
 2020-06-19 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0534/2020
 A1- C241T C3037T C14408T T22843C A23403G C25680T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509373
 2020-06-19 2020-08-05
 Singapore hCoV-19/Singapore/763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3951G C6310A C6312A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509391
 2020-06-19 2020-08-05
 Singapore hCoV-19/Singapore/781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1302T A2818C C6310A C6312A G11083T C13730T G17539A C19524T TTA21991- C23185T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509637
 2020-06-19 2020-08-05
 Spain hCoV-19/Spain/COV005147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2727Y C3037T C4002T C8650Y G10097A C13536T C14408T C21952T A23403G C23731T G25456K GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509638
 2020-06-19 2020-08-05
 Spain hCoV-19/Spain/COV005148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1213Y C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T C25710Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509639
 2020-06-19 2020-08-05
 Spain hCoV-19/Spain/COV005149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T C7011T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC G29543T G29779K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509640
 2020-06-19 2020-08-05
 Spain hCoV-19/Spain/COV005150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T C7011T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC G29543T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509818 MT846502
 2020-06-19 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12049T C14408T C14599T G15732T T19143C A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510889
 2020-06-19 2020-08-07
 Portugal hCoV-19/Portugal/PT1521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7165T C14408T A19182G A23403G C25046T G27014T G27877T G28621T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511808
 2020-06-19 2020-08-08
 United States hCoV-19/USA/CA-IGI-0053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T2126C T2128A C3037T A6716G G11596T C14408T A23403G C24802T GGG28881AAC

EPI_ISL_511819
 2020-06-19 2020-08-08
 United States hCoV-19/USA/CA-IGI-0064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A6716G G11596T C14408T A23403G GGG28881AAC AA29902-

EPI_ISL_511825
 2020-06-19 2020-08-08
 United States hCoV-19/USA/CA-IGI-0071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G1148T C2997T C3037T C4582T C14408T T16161C A20268G A23403G C28854T G28985T C29769T

EPI_ISL_511958
 2020-06-19 2020-08-10
 United Kingdom hCoV-19/England/BRIS-132F8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2488T C3037T C3551T T5573C C6380T C7420T T11112Y G11801A G13348K C14408T T19839C A23403G G24586T C25275T G25552T C27889Y GGG28881AAC T29461Y T29607C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512549 MT893661
 2020-06-19 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0743/2020
 A1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T A23403G G25563T C28087T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_512666
 2020-06-19 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T C3037T G10360A C14408T G16236A A18047C A23403G GGG28881AAC CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_512668
 2020-06-19 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0062/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T A6907C C13011T C14408T C17288T A23403G G24368T G25494A G25563T A29567G TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_512670
 2020-06-19 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C3037T C3832T C14408T T15117C C15579T G18186T G19816T A23403G C26936T GGG28881AAC CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_513075
 2020-06-19 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-MADINAH1043/2020
 C241T C3037T C6128T C14408T A17236G A18187G C18877T C22444T G25563T C26735T C28854T

EPI_ISL_513775 MW035988
 2020-06-19 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGC1- C241T C1059T C1593T C3037T C14408T C16260T C17750Y C18828T C22329Y A23403G G25563T C28821A C29718-

EPI_ISL_513776 MW036019
 2020-06-19 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2281/2020
 C241T C1059T C1593T C3037T C14408T C16260T C22329Y A23403G G25563T C28821A C29718- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_513777 MW036017
 2020-06-19 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2282/2020
 C241T C1059T C1593T C3037T C14408T C16260T C22329Y A23403G G25563T C28821A C29718-

EPI_ISL_514176 MT890309
 2020-06-19 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C15656T A23403G G25563T G25996T C28087T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_514177 MT890310
 2020-06-19 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0831/2020
 ATTAAAGGT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T A23403G G25563T C28087T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_514178 MT890311
 2020-06-19 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0832/2020
 ATT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T A23403G G25563T C28087T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_514183 MT890316
 2020-06-19 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C853T C1059T C1385T G1738T C3037T G3242A C11916T C14120T C14408T A23403G G25563T C28087T G29431A G29434T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_514936
 2020-06-19 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2533/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G22592T A23403G G25563T G29179T G29779T

EPI_ISL_514939
 2020-06-19 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2536/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T A16216G C16650T A20649T A20675T A23403G G25563T C28603T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_514940
 2020-06-19 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2537/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C28603T G29179T G29779T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_515924
 2020-06-19 2020-08-20
 United States hCoV-19/USA/CA-CDPH033/2020
 A1- C241T C710M C3037T G11417T C14408T T16461C C18526T T19449A A20268G A23403G T24076C C27630T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516620
 2020-06-19 2020-08-21
 Mexico hCoV-19/Mexico/Coahuila-InDRE_40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C106T C241T G2809T C3037T C5869T C14408T C18828T A23403G C26042T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_521912 MT972139
 2020-06-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3250T G3728T C5301T T8737C C14408T C18877T A23403G G25563T C26735T C28657T G28975T C29274T

EPI_ISL_521916 MT972137
 2020-06-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_523211
 2020-06-19 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T C17304T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523366
 2020-06-19 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A C26464T C28171T G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523456
 2020-06-19 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523623
 2020-06-19 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523625
 2020-06-19 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525892
 2020-06-19 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0721/2020
 ATTAAAGGTTTA1- C241T C3037T C8818T C14408T C15952T C20951T G20980A A23403G AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_525893
 2020-06-19 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0725/2020
 ATTAAAGGT1- C241T C1059T C3037T T5731G C14408T G19962T G20616T A23403G G25563T G29553A A29700G

EPI_ISL_527013
 2020-06-19 2020-09-03
 Australia hCoV-19/Australia/NSW2415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C6449T G10097A C13536T C14408T A23403G C23731T G28329A G28703C GGG28881AAC G29134T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527740
 2020-06-19 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T G2458T C2716T C3037T C7482T C14408T C17010T C19560G A21487G A23403G G25563T C25810T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_528682
 2020-06-19 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T T6905G C13994T C14408T C17518T G21468T G21724T G23120T A23403G G25563T C25667T C27603T C27654T C29870A

EPI_ISL_529032
 2020-06-19 2020-09-09
 Egypt hCoV-19/Egypt/C-CU002b-S3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2841T C3037T C4002T G10097A C12534T C13536T C14408T C17766T C21597T A23403G G23593T C23731T G24000T GGG28881AAC G28908T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_529085
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0545/2020
 C241T C3037T G4511A C4540T C10376T T13339C C14408T C16575T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529086
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T T13339C C14408T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_529087
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0548/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T C29503T G29540A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529088
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0549/2020
 ATTAAAGGT1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_529090
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529092
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2143T C3037T C11916T C14230T C14408T A16839G C18998T A23403G G25563T G29540A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529093
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0584/2020
 ATTAA1- C241T C1059T C3037T C11916T C14230T C14408T A16839G C18998T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529094
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11916T C11956T C14408T A16839G C18998T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_529095
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0586/2020
 ATTAAAGGTT1- C241T C1059T C3037T C3768T C11916T C14408T A16839G C18998T C23277T A23403G G25563T G29540A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529096
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C11916T C14408T G15906T A16839G C18998T A23403G G25563T C25572T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_529097
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G C26456T A28165G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529098
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11916T C14408T A16839G C18998T A23403G G25563T C25710T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529099
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2676T C3037T G4511A C10376T T13339C C14408T A23403G C27434T G28378C GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529100
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0591/2020
 ATTAAAGGTTTATACCT1- C241T C3037T G4511A C10376T T13339C C14408T T22016A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529101
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C4540T C10376T T13339C C14408T C16575T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529103
 2020-06-19 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0657/2020
 ATTAAAGGTT1- C241T G1466A C3037T C3777T G4511A C10376T T13339C C14408T A23403G A28165G GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_529911 MT992726
 2020-06-19 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T GTTATG515- AAGTCATTT686- C1059T G1268A C3037T A6790G C9430T C14408T C14925T C16946T A23403G G25563T C28706T C29870A

EPI_ISL_529917 MT992732
 2020-06-19 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C14408T A23403G G25217T G25563T C25658T G29868A C29870A

EPI_ISL_529918 MT992733
 2020-06-19 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38C C241T C1059T C3037T C14408T A23403G G24781T G25563T T28902A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_538422
 2020-06-19 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0597/2020
 ATTA1- C241T C1059T C2143T C3037T C11916T C14230T C14408T A16839G C18998T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_538423
 2020-06-19 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0598/2020
 ATTA1- C241T C1059T C3037T C8389T G12832T C14408T A23403G G25563T G27915A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_538425
 2020-06-19 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10376T T13339C C14408T C20016T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_538426
 2020-06-19 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0618/2020
 ATTAAAGGTTTA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G G26233A GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_538427
 2020-06-19 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0619/2020
 ATTAAAGGTTTATACC1- C241T C3037T G4511A A10090G C10376T T13339C C14408T A23403G A28165G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_538428
 2020-06-19 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0644/2020
 ATTAAAGGTTTA1- C241T C3037T T7153C C14408T C16349T A16373C C21110T A23403G G25563T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_538430
 2020-06-19 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T T7153C C7735T C14408T C15720T C16349T A16373C C21110T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_538431
 2020-06-19 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C11916T C14408T G15380T A16839G C18998T A23403G G25563T C25572T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_541733
 2020-06-19 2020-09-23
 India hCoV-19/India/MH-NIV-69925/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C14206T C14408T A23403G GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_543421
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G376T C1059T C3037T C5147T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543427
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543429
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C13774A C14408T A23403G C25521T G25563T C26111T G29736C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543430
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5840C C14408T C16260T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543431
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1135T C3037T A3867T C12513T C14408T A20181G A20268G C20775T A23403G A25050T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543433
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10156T C10319T C14408T A23403G C25294T G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543434
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1454T C3037T T3169C T5071C G12167A C14408T T20529C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543435
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A20753G A23403G G25494T G25563T G26828T A29083G G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543438
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C593T C1059T C3037T C4931A C14408T T21988C C23191T A23403G G23873T A24862T T25547A G25563T G28690T G29449T G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543439
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2228C C3037T A4572G C14408T C16163T A23403G GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543440
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7081T G7798T T11134C C14408T A18535G C19011T A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543441
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T G2282A C3037T C5144T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543442
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C8327T C14408T C16017T G17259T A23403G C24718A T27212C G27459C G27561T C29421T C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543443
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2086T C3037T C10319T G11113T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543456
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C2044T C3037T C3737T C14408T A23403G G25769T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543464
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10626T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543469
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543473
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543525
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6884A C11575T C13487T C14408T A16840C C19029T A20268G C20762T T22222C A23403G C24138T C28115T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543538
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T19284C A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543540
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C13115T C14408T A23403G G25563T C27964T G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543544
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1108T C3037T C14408T C16260T A23403G G25088T G25563T G25606T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543545
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4890T C5055T C14408T T20769C C22444T G23224T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543546
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T A15211G T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543547
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543549
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8371T C10319T C14408T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543553
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T A23403G T24548C G24586T G25340T G25563T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543555
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25019T G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543558
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G252T C313T C3037T C14408T C14676T G15850T G16935T A23403G T24211C G25647T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543655
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543658
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543662
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1150T C3037T C10319T C14408T C17977T A23403G G24812T G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543668
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543671
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543672
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1820A C3037T C14408T G15452T G17151T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543673
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6905G C13994T C14408T C17518T G21468T G21724T G23120T A23403G G25563T C25667T C27603T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543674
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C2434T C3037T G5572T A6546G G10705T C14408T A23403G A27961T G28179C GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543677
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543687
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T T11134C C14408T A18535G C19011T A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543691
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6421T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543692
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10626T C14408T C17639T A23403G C25585A A29380C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543742
 2020-06-19 2020-09-23
 United States hCoV-19/USA/TX-HMH-4596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T202C C241T G2282A C3037T T9742C C14408T T17290C C17639T C22675T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544246
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-4672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T C3037T C3874T C5544T C11916T C14408T C18555T T19311C A21027G C22591T A23403G A23586G G25563T G27281T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544247
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-4673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A8254G C10319T C14120T C14408T A23403G C23701G G25563T G25907T T26723C C27964T C28657T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544271
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-4703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C17678T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544279
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-4710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5806T C14408T C20474T A23403G A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544281
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-4715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C14408T A18751G A23403G G25266T G25563T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544354
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-4820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A23403G A23947G G25563T T26187C C26469G G26828T C28087T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544386
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-4864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C147T C241T C1059T C3037T C9166T C12781T C14408T G19851T C20762T G22616T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544457
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544460
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G C24374T G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544493
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1135T C3037T A3867T C8802T C12513T C14408T A20268G A23403G A25050T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544502
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T G26690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544611
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A4870G C12754T C14408T A18082G A23403G C23410T G25563T C27964T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544630
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2980T C3037T G7042T C9050T G9802T C10458T G11083T C11396A C11916T C14178A C14408T C18998T C20790T A23403G A23947G G25563T T26187C C26469G G26828T C28087T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544642
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4162T G7042T C9163A C9430T C10188T C14408T C16694T A23403G T24982C G25563T G27390C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544664
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C22945T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544917
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544922
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544933
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4548G C9226T C14408T C23185T A23403G G28179C GGG28881AAC G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545722
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-7938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G248T C335T C1059T C3037T C9120T G9383A C14408T C15720T G17019T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546967
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T G4105T C11653T C14408T C16017T T22315C A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546973
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11653T C14408T T14565A C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546989
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2086T C3037T C10319T G11113T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547037
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5140T G8591T C10030T C10319T C14408T C16694T A23403G G25563T C27964T C28892T C29642T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547071
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547152
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-5993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T C1469T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547323
 2020-06-19 2020-09-24
 United States hCoV-19/USA/TX-HMH-6221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547574
 2020-06-19 2020-09-24
 Brazil hCoV-19/Brazil/SP-354/2020
 ATTAAAGGTTTA1- C203T C241T C745T C3037T G11083T C14408T C20133T G21604T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAAAAAA29887-

EPI_ISL_548104
 2020-06-19 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C2973T C3037T G9434T C14408T G16917T C18877T C22444T A23403G G25563T C26735T C28854T GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_549173
 2020-06-19 2020-09-28
 Norway hCoV-19/Norway/3171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16734G A20268G A23403G G24794T C28006T A28951G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553570
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CB92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C22498T A23403G C26801T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553580
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CB65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21147A C21637T A23403G G27967T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553592
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CBA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12861T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554944
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EA69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15738T C18877T C22444T A23403G G25455A G25563T C25782T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554973
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555142
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DD07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T G3164T C4002T C7528T G10097A C13536T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555296
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DCEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4803G G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555473
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E5B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G11083T C14408T G18859T G21624T A23403G GGG28881AAC G29648T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555604
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DD34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T G3125K C4002T G10097A G11083T G11634T C13536T C14408T C21691T C22716T A23403G C23731T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555619
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E2DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C14408T A16638G A23403G C23709T C26464T A28294T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555620
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E2BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555664
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E3E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3498T C5822T C7528Y T8234Y C13501T C14408T C19170T G19509A A23403G C28253Y GGG28881AAC G29440T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555669
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555725
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DCDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130T C3037T C3170T C6336T C14408T C19961T G20006T A23403G C27673T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555752
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94DB1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555838
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C4002T G10097A G10877A G11083T C13536T G14335T C14408T A23403G C23731T C27509T C28542T GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555842
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4548G C11479T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555855
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130T C3037T C3170T C6336T C12403T C14408T C19961T G20006T A23403G C27673T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555873
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-94F3A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C775T C3037T C9438T C11379T C14408T C17718Y G21160A A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555989
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4149C CAG6501- A8031G C12525T C14408T G17523T A23403G G25599T GGG28881AAC G29000K C29353T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556003
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F4A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21660T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556076
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-95D997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T G27415A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556087
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-95DAFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556233
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/Northern Ireland/MILK-95D9A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11600G C14408T A14964R A23403G A25448G C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556235
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-95DA49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C775T C3037T C9438T C14408T G21160A A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556244
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-95D79D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C12756T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556285
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-95DAEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C12068G C12756T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556298
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-95D7AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A A11323T C12756T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556304
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-95DA85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C775T C3037T C9438T C14408T G21160A A23403G GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556430
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EFE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4084T G5716A C6568T C6628T C7528T C8139T C9298T A10286G C14408T T17313C C19524T A22116G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558404
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D28FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558406
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D04BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C12068G C12756T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558409
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CAAB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6255Y C6395T C8208T C8645T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T C26942T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558410
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C70D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1549T C2416T C3037T G3231T C4331T G8371T G11083T C14408T C22477T A23403G A24922G G25563T T25719C C28093T C28399T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558411
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D1B02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G94T C241T ATG518- C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29567G A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558412
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D44B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8991T C11289T C14408T T15051C A20255G A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558413
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D3818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558414
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C9068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1989G C3037T C6582T C7321T C12484T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558417
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D65C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T -11072TTC C14220T C14408T T14739Y T19893C A23403G C24370T C25728T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558418
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C998B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7279T A9433T G10265A C14408T A19650G A23403G GGG28881AAC G29751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558420
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D0514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4338T C14408T T21147A C21637T T21771K A23403G G27967T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558421
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D1829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6013T C14408T C21637T A23403G G25302T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558424
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C705B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1549T C2416T C3037T G3231T C4331T G8371T G11083T C14408T C22477T A23403G A24922G G25563T T25719C C28093T C28399T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558426
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D4B1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558427
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CB136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558429
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C6D55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A G11083T C14408T C15848T C16084T T19893C A23403G C26625T GGG28881AAC A29356C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558431
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D5F5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G G25598T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558433
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D05D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21147A C21637T A23403G G27967T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558436
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C8834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623C C3037T C4577T T7009A C8240T G9543T C14408T A23403G C27046T C27143T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558438
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C756B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5084G T5158C C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558442
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CC9A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C8836Y G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC T29410C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558445
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C7EAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C12439Y C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558447
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CA7F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T G4642A T4949C G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558454
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D02FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558455
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D63BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G G25598T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558460
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CCD22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558467
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D2A04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11279C T14331C C14408T A15278G A23403G C25350T G28487A C29535T G29764T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558469
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C88AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623C C3037T C4577T T7009A C14408T A23403G C27046T C27143T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558475
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D149E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558478
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C789F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9611T A11298G C14408T C21637T G22319R A23403G A28169G C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558479
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C96EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T G13520T C14408T T15978C A23403G C27925T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558480
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D1461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558482
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C70C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323A C14408T C16859T C20555T A23403G C23638Y GGG28881AAC A28967C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558483
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D78BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T T11261C C14408T A23403G T27264G C28093T GGG28881AAC C29366Y G29543A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558484
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CD1DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T C23280Y A23403G G25429T C26681T A29385G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558488
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CB38B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5290Y C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558489
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D1CA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T C22636M A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558490
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C6D37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3961T C14183T C14408T G15894T T19893C A23403G G25523T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558493
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D1838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558496
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D173B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C14396T C14408T A23403G G25429T T26987Y C27686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558497
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C97DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CG241TT C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558498
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D49C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558499
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D4738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C C17913T A20255G C20698A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558501
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C7B78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G C25553T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558502
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D31A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16092T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558503
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D271C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2675T C3037T C6681T C7162T A8165G C14408T G15438T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558505
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D0BB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13684T C14408T C17818T C21637T A23403G A28169G GGG28881AAC A29638T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558506
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CDC24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558507
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D0A60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5004G T5779C C14408T A23403G C25728T G25951T GTTCTA28090- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558508
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CE485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A A28482G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558511
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D8C53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T C5654Y G5716T T10453C C11195T C14408T G14428T A16941R A23403G C25658Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558512
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C5819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C635Y C1437T G2458K C3037T C14408T C19269T A23403G GGG28881AAC C29370Y G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558513
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D7B84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558515
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CD1BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T C26681T A29385G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558516
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D8AE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C12651T C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558518
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CAAA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T C8208T C8645T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T C26942T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558520
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C701F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G922T T1863C C3037T C6541T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558521
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D1F15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558525
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D1FAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558527
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CB0C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T A4305R G13520T C14408T T15978C G20548K C22083Y A23403G C26091T C27925T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558528
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CB50D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T G13520T C14408T T15978C A23403G C27925T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558532
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D2BA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C401T G922T C3037T G5704T C6541T C13431T C14408T A23403G G26185T GGG28881AAC CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_558534
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D0189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21147A C21637T A23403G G27967T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558535
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D356C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GGG28881AAC C29203T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558536
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D347E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558538
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C99D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1527A C3037T A6324G A9433T G10265A C14408T A19650G T22648A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558539
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D19BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1692C C3037T A13003G C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558540
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D3DEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1154G C3037T C14408T C18877T A23403G G25563T G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558541
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D3960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17999T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558542
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CD0DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T C26681T C29167T A29385G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558544
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D210F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558546
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C87A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558548
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C711C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G G25598T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558550
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D3C58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3811T G8371T G11083T C14408T G22225A C22477T A23403G G25563T C27769G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558551
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C9D52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1527A C3037T A6324G A9433T G10265A C14408T A19650G T22648A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558555
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D41D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G529T C3037T C8991T C11289T C14408T T15051C A20255G A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558560
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CCCDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C5512T C13095T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558562
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C9657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G C25624T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558563
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C7C66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4803G G10265A T13794G C13860Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558566
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C7765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T C7735T C14408T C19454T T23255C A23403G A28065C C28310T GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558569
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D1BD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4963T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558570
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D18ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4963T T5507A C5526T G11083T C14408T A20268G C21614T A23403G C28854T A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558571
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D5C1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6681T C7162T C10626T C14408T G15438T C19164T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558573
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D87DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C12651T C14408T G21624T A23403G G23856K G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558575
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D4D72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T21147A C21637T A23403G G27967T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558580
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C9790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T G13520T C14408T T15978C A23403G C27925T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558583
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D67EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A T9596C G11083T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558590
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D2390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558591
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D5EC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11279C T14331C C14408T A15278G A23403G C25350T G28487A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558595
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D1C69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T C3037T A11356T C14408T C14980T T22565C A23403G G24368T C24553T G25563T C27944T C27960T C29269T G29348T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558596
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D3195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4547G G9417T C9665T C10252Y C12473T C13665T C14408T C18167T C21952T A23403G C23709T A26402G C27046T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558599
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D33CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4547G G9417T C9665T C12473T C13665T C14408T C18167T C21952T A23403G C23709T A26402G C27046T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558600
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CAC18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T C8208T C8645T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T C26942T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558602
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CA313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C18568T A19650G A23403G GGG28881AAC C29274S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558603
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C746E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1549T C2416T C3037T G3231T C4331T G8371T G11083T C14408T C22477T A23403G A24922G G25563T T25719C C28093T C28399T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558604
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CA97B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T G4642A T4949C G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558607
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C9F5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5301T C14408T T15648C G18907T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558611
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D2D38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11279C C14097Y T14331C C14408T A15278G A23403G C25350T G28487A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558612
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CAFA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATG1605- A2641G C3037T A9492C A10323G C14408T C21707T A23403G C25844T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558616
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C94A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T G13520T C14408T T15978C A23403G C25511T C27493T C27925T GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558621
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C12D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3338T C3511T C14408T A22301G A23403G C27393T G29508A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558622
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B6D1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C11962T C14408T G19894A G21624T G21786K A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558643
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B69FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21123T A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558648
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AF0FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4328G A8072G C11919T C14408T T18909C A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558659
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B76C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C706T C2706T C3037T T7357C C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558684
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C466B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C4683T G10097A C13536T C14408T C18115T G22199T A23403G C23731T G25563A GGG28881AAC GTACAGTGAACAATGCTAG29759- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558705
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B7434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558706
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B713D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T C16084T G17259T T19893C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558717
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B68B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T G21518T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558732
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B5023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T G21518T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558742
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B5876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T T5507A G11083T A13692R C14408T A20268G G21010A C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558745
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C2542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T -11072TTC C14220T C14408T T19893C A23403G C24370T C25728T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558764
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C0993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8097A C14408T A23403G A26612G C27476T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558765
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AF5E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558771
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B57B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C8597T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558772
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C3909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558774
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C3A7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1387T C3037T C14408T C18714T C22564A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558781
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5BC5F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11279C T14331C C14408T A15278G A23403G C25350T G28487A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558782
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5ABDED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558791
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B7935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11866T C14408T A23403G C23934T G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558807
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C0DE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3338T C3511T T13678C C14408T G16558T A22301G A23403G C27393T G29508A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558808
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B2B8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T C3037T A9433T G10265A C14408T C17502T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558823
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C4382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6628Y G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558824
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B6C6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T G21518T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558829
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5AC1FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12145G C14408T C20759T C21676T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558831
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B53A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A489G C3037T T5465C G6387A C12623T C14408T G21624T A23403G G24102A AA25800TT C27903T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558844
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5BF92E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21123T A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558845
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B2BE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T T5507A G11083T C14408T A20268G G21010A C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558849
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B6B12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T T4579A C7735T C14408T C19454T T23255C G23282T A23403G A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558853
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B63FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C T9157C C12741A C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558854
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A4494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558864
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B50F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G199T C241T A2526C C3037T C3464T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558865
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B4FDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6324G A9433T G10265A C14408T A19650G A23403G C28335T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558870
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B674B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A476G C1457T T2537G C3037T C6573T G12191T C14408T T16479C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558871
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5A85F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C14408T A16638G A23403G G25396T C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558885
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5B4E66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17722T A23403G T24226A G25340T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558893
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C42FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558895
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C3866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558897
 2020-06-19 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5BC47B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4145A A11279C T14331C C14408T A15278G A23403G C25350T C26542T G28487A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565923
 2020-06-19 2020-09-30
 Spain hCoV-19/Spain/PV-IBV-98005146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_566079
 2020-06-19 2020-10-01
 Russia hCoV-19/Russia/MOW-RII-MH251S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A C5175T C6883T C14408T C21575T G21724A A23403G G28166A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

MT811487
 2020-06-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1044-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T C3037T T3144C C7768T C11575T A14041G C14408T A20268G A23403G A24777T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811526
 2020-06-19 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1094-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G11083T C14408T A20268G A23403G G23522A A25747C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT981423
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0545/2020
 C241T C3037T G4511A C4540T C10376T T13339C C14408T C16575T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT981424
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T T13339C C14408T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

MT981425
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0548/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T C29503T G29540A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT981426
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0549/2020
 ATTAAAGGT1- C241T C1059T C3037T C4113T C11916T C14408T C18998T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MT981428
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT981430
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2143T C3037T C11916T C14230T C14408T A16839G C18998T A23403G G25563T G29540A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT981431
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0584/2020
 ATTAA1- C241T C1059T C3037T C11916T C14230T C14408T A16839G C18998T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT981432
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11916T C11956T C14408T A16839G C18998T A23403G G25563T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT981433
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0586/2020
 ATTAAAGGTT1- C241T C1059T C3037T C3768T C11916T C14408T A16839G C18998T C23277T A23403G G25563T G29540A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT981434
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C11916T C14408T G15906T A16839G C18998T A23403G G25563T C25572T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT981435
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G C26456T A28165G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT981436
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11916T C14408T A16839G C18998T A23403G G25563T C25710T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT981437
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2676T C3037T G4511A C10376T T13339C C14408T A23403G C27434T G28378C GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT981438
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0591/2020
 ATTAAAGGTTTATACCT1- C241T C3037T G4511A C10376T T13339C C14408T T22016A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT981483
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C4540T C10376T T13339C C14408T C16575T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT981485
 2020-06-19 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0657/2020
 ATTAAAGGTT1- C241T G1466A C3037T C3777T G4511A C10376T T13339C C14408T A23403G A28165G GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT990450
 2020-06-19 2020-09-09
 Egypt SARS-CoV-2/human/EGY/CU002b_S3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2841T C3037T C4002T G10097A C12534T C13536T C14408T C17766T C21597T A23403G G23593T C23731T G24000T GGG28881AAC G28908T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

MW006595
 2020-06-19 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0597/2020
 ATTA1- C241T C1059T C2143T C3037T C11916T C14230T C14408T A16839G C18998T A23403G G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

MW006596
 2020-06-19 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0598/2020
 ATTA1- C241T C1059T C3037T C8389T G12832T C14408T A23403G G25563T G27915A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

MW006598
 2020-06-19 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10376T T13339C C14408T C20016T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MW006599
 2020-06-19 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0618/2020
 ATTAAAGGTTTA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G G26233A GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MW006600
 2020-06-19 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0619/2020
 ATTAAAGGTTTATACC1- C241T C3037T G4511A A10090G C10376T T13339C C14408T A23403G A28165G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MW006601
 2020-06-19 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0644/2020
 ATTAAAGGTTTA1- C241T C3037T T7153C C14408T C16349T A16373C C21110T A23403G G25563T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MW006603
 2020-06-19 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T T7153C C7735T C14408T C15720T C16349T A16373C C21110T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MW006604
 2020-06-19 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C11916T C14408T G15380T A16839G C18998T A23403G G25563T C25572T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_480738 MT745708
 2020-06-20 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2137/2020
 C241T C3037T G14294A C14408T A23403G A23746G G24077A A29622C

EPI_ISL_480739 MT745709
 2020-06-20 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2138/2020
 C241T AAGTCATTT686- C3037T C4002T C4206T G10097A G11083T G13043S C13536T C14408T C15720T T21021C C21952T A23403G C23731T GGG28881AAC

EPI_ISL_480741 MT745711
 2020-06-20 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2140/2020
 C241T T1947C C3037T G6446T C14408T C18877T C22444T A23403G T25556G G25563T C26735T C28854T

EPI_ISL_480744 MT745714
 2020-06-20 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2143/2020
 C241T G1598T C3037T C4965T A8072G C8733T G11083T C14408T A16011G C20016T A21213G C21575Y A23403G A24353G G27703T GGG28881AAC

EPI_ISL_483487
 2020-06-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1056-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C6558T C14408T C16830T A20268G A23403G A28401T C28854T

EPI_ISL_483488
 2020-06-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1057-SAN/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T G6422A C10319T C14408T T16926C A18424G A19974G C21304T G22225T A23403G G25563T G25907T C27964T C28472T C28869T

EPI_ISL_483489
 2020-06-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1058-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1386G C3037T G3971T G7393A C10156T C14408T A20268G C21595T A23403G T24076C C28854T

EPI_ISL_483490
 2020-06-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1059-SAN/2020
 ATTA1- C241T C1059T C3037T C14408T G17014T A23403G G25563T A25822T

EPI_ISL_483491
 2020-06-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1060-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1593T T1983C G2914C C3037T C14408T A20268G A23403G C28854T

EPI_ISL_483492
 2020-06-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1061-SAN/2020
 ATTAAAGGTTT1- C241T C2881T C3037T C6628T C11572T C14408T C19550T A20268G A23403G A24667G C28854T

EPI_ISL_483493
 2020-06-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1062-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1486C C3037T G4925T T8426C G13617T C14408T C16887T C17285T G18816T A20268G A23403G T24076C G27226T C28854T G29468A

EPI_ISL_483494
 2020-06-20 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1063-SAN/2020
 ATTAAA1- C241T C1059T C3037T A4197G C14408T C15720T C17550T A23403G G25563T

EPI_ISL_483629
 2020-06-20 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_181/2020
 C241T A1163T C3037T C6541T C8760T G11417T T12535G C14178T C14408T C15925T C18744T A23329T A23403G G28280T GGG28881AAC

EPI_ISL_483630
 2020-06-20 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_182/2020
 C241T C3037T C14408T C21595T A23403G GGG28881AAC

EPI_ISL_483631
 2020-06-20 2020-07-08
 Bangladesh >hCoV-19/Bangladesh/BCSIR-NILMRC_184/2020
 C241T A1163T C3037T G3250T G11330T C14408T A23403G G25534T C25710T GGG28881AAC

EPI_ISL_483636
 2020-06-20 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_196/2020
 C241T A1163T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_483641
 2020-06-20 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_195/2020
 C241T A1163T T2211C A2870G C3037T A8026G C14408T A23403G GGG28881AAC

EPI_ISL_483642
 2020-06-20 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_198/2020
 C241T C2453T C3037T T10371G C14119T C14408T A23403G G26199T G28321T GGG28881AAC

EPI_ISL_483643
 2020-06-20 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_199/2020
 C241T A1163T G1727A C3037T C10340T G11083T G12566T C14408T C19813T C21058T A23403G G26211T GGG28881AAC

EPI_ISL_483644
 2020-06-20 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_201/2020
 C241T A1163T C3037T C4113T C4321T C8016T C14408T A23092G A23403G G26152T GGG28881AAC

EPI_ISL_483693
 2020-06-20 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_180/2020
 C241T A1163T G2585T C3037T C3961T C14408T A19008C T20592C C21575T C21846T A23403G G23608T A24970G G25907T G26230T T26903C C28006G GGG28881AAC

EPI_ISL_483699
 2020-06-20 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_194/2020
 C241T C1288T C2048T C3037T G11521T T12607C C13255T C14408T G19824T A22193T A23403G G24368T GGG28881AAC

EPI_ISL_483700
 2020-06-20 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_203/2020
 C241T A1163T C3037T C14408T T20246C G20489T A23403G A23541T GGG28881AAC

EPI_ISL_484348
 2020-06-20 2020-07-08
 United Kingdom hCoV-19/England/NOTT-112161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484965 MT750169
 2020-06-20 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9120T C14408T A19899T A21464G A23403G G25444A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486503 LR860622
 2020-06-20 2020-07-10
 Switzerland hCoV-19/Switzerland/160006_440_H05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G3025R C3037T G3122K T3144D G6986K T7035W A9859W T9913W G11083T C14408T C19366Y A20742C G22203K A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486504 LR860618
 2020-06-20 2020-07-10
 Switzerland hCoV-19/Switzerland/160007_440_A06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C751Y T2954Y T2996K C3037T A5094R T6905W A6939R T7035W G11083T C14408T C20148Y A20742C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489915
 2020-06-20 2020-07-14
 United States hCoV-19/USA/WI-GMF-07162/2020
 ATTAAAGGTTTATACCTT1- C241T C313T C715T C1059T G2036T C3037T A3744W C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490733
 2020-06-20 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A2903R C3037T T8944C C14408T C14741T A23403G G24000T A28294C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_492065
 2020-06-20 2020-07-19
 Oman hCoV-19/Oman/810962/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G10265A C14408T C16293T C20132T A23403G C25452T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_495065 MT800939
 2020-06-20 2020-07-22
 India SARS-CoV-2/human/IND/GBRC311a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T A5176G C14408T C18877T C21742T A21851C G22273A A23403G G25563T C26735T C29750T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495066 MT800934
 2020-06-20 2020-07-22
 India SARS-CoV-2/human/IND/GBRC311b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T A2292C C2836T C3037T G4300T C14408T C18568T C18877T C19154T G21724T C22444T A23403G G25563T C26735T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_497249 MT831771
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2617/2020
 ATT1- C241T C3037T G14290T C14408T C15933T G16968T T19839C A23403G G25494T C25513T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497259 MT831577
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2627/2020
 AT1- C241T C3037T A4372G A6293G C14408T C15933T G16968T G19009T T19839C A23403G G24193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_497260
 2020-06-20 2020-07-24
 United States hCoV-19/USA/WA-S2628/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497261 MT831570
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2629/2020
 ATTAAAGGTTTATA1- C241T C1059T T2827C C3037T G7798T T8473C C9286T G11083T A11846G C14408T G16912T G20069A A23403G G25563T C25916T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497262 MT831796
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2630/2020
 AT1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497263 MT831729
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2631/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T G1957A C2453T C3037T G7360T A9656G C11322T C14408T T21048C A23403G C25433T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497265 MT831605
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2633/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T C18508T G20069A A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497267 MT831834
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2635/2020
 ATTAAAG1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497268 MT831645
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2636/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T C16466T G16912T A23403G G25563T G29553A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_497269 MT831747
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2637/2020
 ATT1- C241T C1059T G1957A C2453T C3037T G7360T A9656G C11322T C14408T T21048C A23403G C25433T G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_497270 MT831811
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2638/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C9286T A9744G G11083T C14408T G16912T A23403G G25563T G29553A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_497271 MT831835
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2639/2020
 ATTAAAG1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497272 MT831725
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2640/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T G20069A A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497273 MT831818
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2641/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497274 MT831786
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2642/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497275
 2020-06-20 2020-07-24
 United States hCoV-19/USA/WA-S2643/2020
 ATT1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T G20069A A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497276 MT831836
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2644/2020
 ATTAAA1- C241T C478T C1059T C2508T C3037T C14408T C16393T T18278A T21826A A23403G G25563T G25720T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497277 MT831851
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2645/2020
 AT1- C241T C478T C1059T C2508T C3037T C14408T C16393T T18278A T21826A A23403G G25563T G25720T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497278 MT831854
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2646/2020
 ATTAAAGGTT1- C241T C478T C1059T C2508T C3037T C14408T C16393T T18278A T21826A A23403G G25563T G25720T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497279 MT831710
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2647/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T G20069A A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_497280 MT831806
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2648/2020
 ATT1- C241T C478T C1059T C2508T C3037T C14408T C16393T T18278A T21826A A23403G G25563T G25720T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497281 MT831688
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2649/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T G20069A A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497282 MT831792
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2650/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497283 MT831846
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2651/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T A23403G G25563T G27382C G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497284 MT831810
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2652/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T G20069A A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497285 MT831783
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2653/2020
 ATT1- C241T C1059T C3037T G7798T T8473C C9286T G11083T C14408T G16912T G20069A A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497293 MT831749
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2661/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C14768T C15933T T15939C G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497294
 2020-06-20 2020-07-24
 United States hCoV-19/USA/WA-S2662/2020
 AT1- C241T A2127G C3037T C5481T C14408T C15933T G16968T T19839C A23403G C27945T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_497295 MT831873
 2020-06-20 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2663/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497296
 2020-06-20 2020-07-24
 United States hCoV-19/USA/WA-S2664/2020
 AT1- G1401A G2051A C8782T C16887T C17747T A17858G C18060T A19308G C20031T G23593T A27950C T28144C C29642T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_501093
 2020-06-20 2020-07-30
 United States hCoV-19/USA/WA-UW-11142/2020
 ATTAAAGGTTTATACCTTCCC1- AAC34TTT C241T G1495T T1591C T2698C C3037T T8883C TT8885AA T10554A AGG13512TTA TA14222GC C14225T C14408T A20288G C21721T C23220T A23403G C26894T C28638A GGG28881AAC TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501097
 2020-06-20 2020-07-30
 United States hCoV-19/USA/WA-UW-11300/2020
 ATTAAAGGTTTATA1- TCCC18GGSM A34H C36T C241T C1059T T1927C C3037T G6961T C10319T C14408T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T C29870A

EPI_ISL_507125
 2020-06-20 2020-08-03
 United Kingdom hCoV-19/England/NORT-29BF65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2523T C3037T C14408T A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_508225
 2020-06-20 2020-08-04
 India hCoV-19/India/GA31/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C14408T C21648T A23403G GGG28881AAC G29868A

EPI_ISL_508226
 2020-06-20 2020-08-04
 India hCoV-19/India/GA32/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C313T C3037T C5700A G10465A C14408T G15025T A22975C A23403G GGG28881AAC C29095T G29868A

EPI_ISL_508227
 2020-06-20 2020-08-04
 India hCoV-19/India/GA33/2020
 ATTAAAGGT1- C241T C313T C3037T C5700A G6443T A8689G G10465A G11335T C14408T G19348T A20236G A23403G C25413T G28371T GGG28881AAC G29734A G29868A

EPI_ISL_508228
 2020-06-20 2020-08-04
 India hCoV-19/India/GA34/2020
 ATTAAAGGTTTA1- C241T C313T C3037T C3736T C5700A A11947G A12471G C14408T C21648T A23403G GGG28881AAC G29868A

EPI_ISL_508229
 2020-06-20 2020-08-04
 India hCoV-19/India/GA35/2020
 ATTAAAGGTT1- C241T C313T C3037T C5700A C8480T G10465A C14408T A23403G G25690T GGG28881AAC C29274T G29868A

EPI_ISL_508231
 2020-06-20 2020-08-04
 India hCoV-19/India/GA37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C313T A2066G C3037T C5700A G10465A C14408T A18902G G21974T A23403G G23587T GGG28881AAC G29868A

EPI_ISL_508232
 2020-06-20 2020-08-04
 India hCoV-19/India/GA38/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A G10465A C14408T A23403G G25690T GGG28881AAC G29868A

EPI_ISL_508233
 2020-06-20 2020-08-04
 India hCoV-19/India/GA39/2020
 ATTAAAGGTTTATACCT1- C241T C313T C3037T C5700A C14408T C21648T A23403G G28001T GGG28881AAC G29868A

EPI_ISL_508235
 2020-06-20 2020-08-04
 India hCoV-19/India/GA40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C1185T C3037T C5700A G6349T C14184T C14408T C15848T C21648T A23403G GGG28881AAC G29868A

EPI_ISL_508236
 2020-06-20 2020-08-04
 India hCoV-19/India/GA41/2020
 AT1- C241T C313T C2449T C3037T G3644A C5700A G10465A C14408T A23403G G26718T GGG28881AAC G29868A

EPI_ISL_508237
 2020-06-20 2020-08-04
 India hCoV-19/India/GA42/2020
 AT1- T13C C241T C313T C3037T C5700A G10465A C14408T A23403G A24069T C27752T GGG28881AAC G29868A

EPI_ISL_508238
 2020-06-20 2020-08-04
 India hCoV-19/India/GA43/2020
 ATTAA1- C241T C313T C3037T C5700A G10465A C14408T A23403G A24069T C24773G C27752T GGG28881AAC

EPI_ISL_508239
 2020-06-20 2020-08-04
 India hCoV-19/India/GA45/2020
 A1- A4T C241T C313T C3037T C5700A C14408T C19011T A23403G GGG28881AAC G29868A

EPI_ISL_508240
 2020-06-20 2020-08-04
 India hCoV-19/India/GA46/2020
 ATTAAAGGTTTA1- G91T C241T C313T C3037T C5700A G10465A C14408T A23403G GGG28881AAC G29734A G29868A

EPI_ISL_508241
 2020-06-20 2020-08-04
 India hCoV-19/India/GA47/2020
 A1- G91T C241T C313T C3037T C5700A G10465A C14408T A23403G GGG28881AAC G29734A

EPI_ISL_508242
 2020-06-20 2020-08-04
 India hCoV-19/India/GA48/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C1960T C3037T C5700A G10465A C14408T A23403G GGG28881AAC G29734A G29868A

EPI_ISL_508243
 2020-06-20 2020-08-04
 India hCoV-19/India/GA49/2020
 ATTAAAGGTTTATAC1- C20G A22G G91T C241T C313T C3037T C5700A G10465A C14408T A23403G GGG28881AAC G29734A G29868A

EPI_ISL_508245
 2020-06-20 2020-08-04
 India hCoV-19/India/GA50/2020
 G91T C241T C313T C3037T C5700A G10465A C14408T A23403G GGG28881AAC G29734A G29868A

EPI_ISL_508246
 2020-06-20 2020-08-04
 India hCoV-19/India/GA51/2020
 ATTAAAGGT1- G91T C241T C313T C3037T C5700A G10465A C14408T A23403G GGG28881AAC G29734A G29868A

EPI_ISL_508247
 2020-06-20 2020-08-04
 India hCoV-19/India/GA52/2020
 ATTAAAGGTTTATACCTTCCCAG1- G91T C241T C313T A2109G C3037T C5700A G10465A C14408T A23403G GGG28881AAC G29734A G29868A

EPI_ISL_508248
 2020-06-20 2020-08-04
 India hCoV-19/India/GA53/2020
 A4- G91T C241T C313T C3037T C5700A G10465A C14408T A15860G A23403G GGG28881AAC G29734A G29868A

EPI_ISL_508249
 2020-06-20 2020-08-04
 India hCoV-19/India/GA54/2020
 ATTA1- C241T C313T C3037T C5700A C8480T G10465A C14408T A23403G C25460T G25690T G25784C GGG28881AAC G29868A

EPI_ISL_508250
 2020-06-20 2020-08-04
 India hCoV-19/India/GA55/2020
 A1- A4T C241T C313T C3037T C5700A C8480T G10465A C14408T A23403G C25460T G25690T G25784C GGG28881AAC G29868A

EPI_ISL_508251
 2020-06-20 2020-08-04
 India hCoV-19/India/GA56/2020
 ATTAAAGG1- C241T C313T C3037T C5700A T7919C C8480T G10465A C14408T A23403G G25690T GGG28881AAC G29868A

EPI_ISL_508252
 2020-06-20 2020-08-04
 India hCoV-19/India/GA57/2020
 ATTAAAGGTTT1- C241T C313T C3037T C5147T C5700A C8480T G10465A C14408T A23403G G25690T GGG28881AAC C29274T G29868A

EPI_ISL_508253
 2020-06-20 2020-08-04
 India hCoV-19/India/GA59/2020
 ATTAAAGGTTTATACCTTCCCAG1- A29T C241T C313T C3037T C5147T C5700A C8480T G10465A C14408T A23403G G25690T GGG28881AAC C29274T G29868A

EPI_ISL_508255
 2020-06-20 2020-08-04
 India hCoV-19/India/GA60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C313T C3037T C5147T C5700A C8480T G10465A C14408T A23403G G25690T GGG28881AAC C29274T G29868A

EPI_ISL_508256
 2020-06-20 2020-08-04
 India hCoV-19/India/GA61/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C313T C3037T C5700A C8480T G8612T C10369T G10465A C14408T A23403G G25690T GGG28881AAC G29868A

EPI_ISL_508257
 2020-06-20 2020-08-04
 India hCoV-19/India/GA62/2020
 A4- C241T C313T C1594T C3037T C5700A C14408T C19011T A23403G GGG28881AAC A29756T G29868A

EPI_ISL_508258
 2020-06-20 2020-08-04
 India hCoV-19/India/GA63/2020
 ATTAAAGGTTTATACCTT1- G23T A26- C241T C313T C3037T C5700A C8480T G8612T C10369T G10465A C14408T A19337G A23403G G25690T GGG28881AAC AA29865TC G29868A

EPI_ISL_508288
 2020-06-20 2020-08-04
 India hCoV-19/India/IB10/2020
 A1- A4G C241T C635T C3037T C8917T G9389A T9892C C14408T A23403G G28300T GGG28881AAC G29868A

EPI_ISL_508295
 2020-06-20 2020-08-04
 India hCoV-19/India/IB17/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C G28048T G28237T GGG28881AAC G29751C G29868A

EPI_ISL_508306
 2020-06-20 2020-08-04
 India hCoV-19/India/IB28/2020
 ATTAAAGGTTTATACCTTCCCA1- C28T C241T C1218T C3037T C8917T C14408T T14949C C19145T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508312
 2020-06-20 2020-08-04
 India hCoV-19/India/IB33/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1218T C3037T C8917T C14408T C19145T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508331
 2020-06-20 2020-08-04
 India hCoV-19/India/IB54/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T T7623G A7626G T8625G G10907C C14408T G14452T C14599T C17876T C19097T T19371C C19881T A23403G C24616T C27110T T27384C GGG28881AAC

EPI_ISL_508336
 2020-06-20 2020-08-04
 India hCoV-19/India/IB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1218T C3037T C8917T C14408T C19983T A23403G G23593T C25867T C27110T T27384C GGG28881AAC

EPI_ISL_508418
 2020-06-20 2020-08-04
 India hCoV-19/India/MN26/2020
 ATTAAAGGTTTATACCTTCCCA1- C28- C241T C3037T C10039T C14408T T15366C C18877T C22444T A23403G A23923G G25563T C26735T C28854T G29868A

EPI_ISL_511932
 2020-06-20 2020-08-10
 India hCoV-19/India/GA44/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C313T C3037T C5700A G10465A C14408T A23403G G25690T GGG28881AAC G29868A

EPI_ISL_511933
 2020-06-20 2020-08-10
 India hCoV-19/India/GA58/2020
 C241T C313T C3037T C5147T C5700A C8480T G10465A C14408T A23403G G25690T GGG28881AAC C29274T G29868A

EPI_ISL_511964
 2020-06-20 2020-08-10
 United Kingdom hCoV-19/England/BRIS-132FAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11164G C14408T G15406T G21538T G22332A A23403G G25429T G27583T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_511980
 2020-06-20 2020-08-10
 United Kingdom hCoV-19/England/BRIS-132F61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T A16142G A22069G G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512547 MT893659
 2020-06-20 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0741/2020
 ATTAAAGGTTT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C15656T A23403G G25563T G25996T C28087T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_512552 MT893664
 2020-06-20 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0746/2020
 AT1- C241T C1059T C3037T C10319T C14408T G16710T G20176T A23403G A25121T G25563T C27964T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_512667
 2020-06-20 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C3037T G10360A C14408T A18047C A23403G T26497C GGG28881AAC CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_512669
 2020-06-20 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C751T C1059T G2144T C2716T C3037T C7482T C14325T C14408T T16398C C17010T A23403G G25563T G27226T G28209C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837T

EPI_ISL_513778 MW036063
 2020-06-20 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2284/2020
 C21M C241T C3037T G7960T C14408T A20268G A23403G T24076C C27847T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513779 MW036007
 2020-06-20 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2285/2020
 ATT1- C241T C3037T G7960T C14408T A14827G A20268G A23403G T24076C A25048R C27847T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513782 MW036079
 2020-06-20 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2289/2020
 ATT1- G72R C3037T G7960T C14408T A20268G C21691Y A23403G T24076C C27847T C28854T

EPI_ISL_513783 MW036027
 2020-06-20 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGC1- C241T C3037T C3486Y G7960T C14408T A20268G A23403G T24076C C27847T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513784 MW035998
 2020-06-20 2020-08-13
 United States SARS-CoV-2/human/USA/CA-CZB-2293/2020
 ATTAAAGGTT1- C241T C3037T G7960T G11083T C14408T A20268G A23403G T24076C C27847T C28854T

EPI_ISL_514187 MT890320
 2020-06-20 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0841/2020
 ATTAAAGGTT1- C241T C379A C1059T T2153C C2268T C3037T G4657A G7393T C8950T G11851A C14408T G21578T A23403G G25563T C25703T G28842T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_514937
 2020-06-20 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C313T C823T C3037T C14408T C19763T A23403G G26104T GGG28881AAC

EPI_ISL_514941
 2020-06-20 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2538/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G27703T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514942
 2020-06-20 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2539/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T G11083T C11833T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T G29864A ACAAAAAAAAAAAAAA29869-

EPI_ISL_514943
 2020-06-20 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2540/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514952
 2020-06-20 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2549/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T G22335T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_517623
 2020-06-20 2020-08-24
 Suriname hCoV-19/Suriname/SR-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9803T C14408T C15324T C16193T C18060T G19999T A22404T C22450T A23403G C28253T G29742T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_521914 MT972141
 2020-06-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521963 MT972159
 2020-06-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522123 MT972302
 2020-06-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2412/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522405 MT946895
 2020-06-20 2020-08-25
 United States SARS-CoV-2/human/USA/AK-PHL550/2020
 ATTAAAGGTTTAT1- C241T C900T C2061T C3037T G11243T C14408T C18647T A20268G G21099T C21682T A23403G T24076C G25654T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_523457
 2020-06-20 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G18105C G21255C C22227T A23403G C26801G C28932T G29645T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523626
 2020-06-20 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523664
 2020-06-20 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C13046T C14408T G19480A A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525701 MT946871
 2020-06-20 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C1684T C3037T C5822T C10138T C10645T C14408T A23403G C23673T G25563T G27147T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_525759 MT946894
 2020-06-20 2020-08-31
 United States SARS-CoV-2/human/USA/AK-PHL549/2020
 ATTAAAGGTTTAT1- C241T C2143T C3037T C6336T C14408T G16285K A20268G A21794G G21800T A23403G G25244T C29370G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525899
 2020-06-20 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3452A C3992T G4510T C8311T C14408T C15933T T19839C A23403G T25451C GGG28881AAC

EPI_ISL_529913 MT992728
 2020-06-20 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1110/2020
 ATTAAAGGTT1- C241T C1059T C3037T C10319T C12068T A12820G C14408T C16308T A23403G G25563T C27964T C29870A

EPI_ISL_537546
 2020-06-20 2020-09-16
 United States hCoV-19/USA/CA-UCLA-240/2020
 A1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_537547
 2020-06-20 2020-09-16
 United States hCoV-19/USA/CA-UCLA-241/2020
 A1- C241T C854T C1059T C1758T C3037T C5183T C12534T C14408T A22320G A23403G G25563T G26172T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_537554
 2020-06-20 2020-09-16
 United States hCoV-19/USA/CA-UCLA-252/2020
 ATTAAAGGTTTATA1- C241T C3037T G4925T T8426C G13617T C14408T C16887T C17285T G18816T A20268G A23403G T24076C G27226T C28854T G29468A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_541734
 2020-06-20 2020-09-23
 India hCoV-19/India/MH-NIV-71548/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T T3547C C5700A C6395T C14408T G17658T A23403G G23587C GGG28881AAC G29511T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541735
 2020-06-20 2020-09-23
 India hCoV-19/India/MH-NIV-71791/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2062T C3037T C4560T C5700A G11634T C14184T C14408T A23403G A27663T C28409T GGG28881AAC G29759T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541736
 2020-06-20 2020-09-23
 India hCoV-19/India/MH-NIV-72638/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC C29274T G29513A GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_543458
 2020-06-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-4245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6884A C11575T C13487T C14408T A16840C C19029T A20268G C20762T T22222C A23403G C24138T C28115T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543461
 2020-06-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-4249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12756T C14408T C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543530
 2020-06-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-4321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C11103T C14408T A23403G G25088T G25563T C28890T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543699
 2020-06-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-4533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T G21422A A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543706
 2020-06-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-4542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T G248T C335T C1059T T2330G C3037T T6334C C9120T A12197C C14408T T16425G C22450T A23403G G25563T T27384C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543709
 2020-06-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-4546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A17637C A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543711
 2020-06-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-4551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T G3433A C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543730
 2020-06-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-4580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T T20565G A22382G A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543744
 2020-06-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-4598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543757
 2020-06-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-4616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T C14408T C19186T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543759
 2020-06-20 2020-09-23
 United States hCoV-19/USA/TX-HMH-4618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T A23403G T24548C G24586T G25340T G25563T G28321T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544255
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-4684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T T11134C C14408T A18535G C19011T A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544358
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-4827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2324A A2969G C3037T C13274T C14408T C17104T G19816T A23403G G25563T G26389T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544362
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-4831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C14408T C15763T C21638T T22981C A23403G G25563T T27206C C27964T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544363
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-4833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G T29689C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544366
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-4837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544367
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-4839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4908A C10116T G11083T C14408T A23403G T24139C G25563T G27047T G27261T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544376
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-4852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544389
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-4867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15452T G17151T C21648T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544396
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-4878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4890T C5055T C14408T T20769C C22444T G23224T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544423
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-4948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T19284C A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544428
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-4954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A T2959C C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544429
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-4955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T A23403G G25563T G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544431
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-4957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544496
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-5061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544504
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-5072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A23403G G25563T G26828T A29083G G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544506
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-5076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C10450T T12022C C14408T T15276A C16428T G20397A A23403G G25563T G25913A G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544528
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-5105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544553
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-5142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5840C C11956T C14408T C16260T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544587
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-5192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T A14502G C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544646
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-5277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544883
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-5587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C11824T C14408T A23403G G25563T C28890T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544904
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-5615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544932
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-5648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G G25424A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546080
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-6555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G A11356T C14408T C14688T T16950C C17550T A23403G G26730T GGG28881AAC G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546949
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-5695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5840C C11956T C14408T C16260T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546983
 2020-06-20 2020-09-24
 United States hCoV-19/USA/TX-HMH-5743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G T27212C G27561T C27600T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551362
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-932734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T T5507A G11083T C14408T A20268G G21010A C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551386
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92EF7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC C28171T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551397
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-932813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17491T C19402T C21637T A23403G A28169G A28482G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551424
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92FFAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC G29447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551452
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-930A5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11279C T14331C C14408T A15278G A23403G C25350T G28487A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551486
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92CF44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3787Y C14408T G18157K C21637T A23403G T28026Y A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551498
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92D022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551522
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-933ED4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A A10957G C14318T C14408T A23403G C23731T G28580T GGG28881AAC CTCCTGCTAGAA28890- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551532
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92E3DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T C20290T G21624T A23403G G25699A A26019G C27567Y C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551558
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92DF34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8917T G9389A -11075TTT G11083K C14408T G17608T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552901
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9303D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163G C3037T A3481T T7633Y C14408T C20429T G20995T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552913
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-93036F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9737G C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552958
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-932084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553354
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C8D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6184R C6628T G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554128
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-956FE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8982T A9433T G10265A C14408T C18807T A19650G A23403G T23727C GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554864
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94EA5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C3817T C14408T A23403G G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554885
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C60A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A14691G G15451A C17125T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554891
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-95C0A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T14789C G18020A G19816T A23403G G24038T GGG28881AAC G29254T C29640T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554904
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C1BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554905
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C39A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C6843T G10097A C13378T C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554915
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C36D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A19950G A20047G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554920
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C38B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A19950G A20047G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554926
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C42E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1102T C3037T C3587T C8727T C14408T G20134T G22021T A23403G T24957C G25440T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554935
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E97B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5826T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554937
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5826T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554940
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5826T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554941
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C5EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C8597T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554946
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C4B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T T5507A G11083T C14408T A20268G G21010A C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554947
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3338T C3511T T13678C C14408T G16558T T22016A A22301G A23403G C27393T G29508A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554951
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13326T C14408T C21637T A23403G G24977C A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554955
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C43D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2110T C3037T A4926C C14408T G15602A G21624T A23403G G24197T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554956
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C3B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C G6850T C12439T C12651T C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554960
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C5B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C G6850T C12651T C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554961
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E7BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5884T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554985
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C22227T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554998
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A18001C C21637T G22316A A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555024
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E95D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21123T A23403G G25459T C25511T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555037
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C34F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G G24872T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555038
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C37C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555039
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E94E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G TC27039AA GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555053
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E79F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16092T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555055
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C35E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C843T T1623C C3037T G3606T C4577T T7009A C9438T C14408T T18471C A23403G C27046T C27143T C27532Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555058
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C3C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T A7981G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555066
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E93F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T G4642A T4949C G10265A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555067
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C12651T C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555071
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C0DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555075
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C21952T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555076
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C3A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555078
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2675T C3037T G7736A C7851Y C14408T C20235T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555083
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E96C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2675T C3037T G7736A C14408T C20235T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555101
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C0EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T C16084T G17259T T19893C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555102
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C5FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T A2641G C3037T C3622T C14408T C14676T G21119T A23403G C25714T C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555110
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C22480T A23403G A28169G C28512Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555168
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D9B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C T9157C C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555187
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D9A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T C16084T G17259T T19893C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555196
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3338T C3511T C14408T A22301G A23403G C27393T G29508A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555208
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D8CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3338T C3511T C14408T A22301G A23403G C27393T G29508A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555277
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94D9C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T C16084T G17259T T19893C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555537
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DDDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21123T A23403G G25459T C26570Y G27841T G28195T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555565
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DDBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T C14408T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555579
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DDCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130T C3037T C3170T C6336T C14408T C19343T C19961T G20006T A23403G C27673T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555615
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DDAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G21123T A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555668
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DDF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2156T C3037T A9433T G10265A C14408T A19650G A20067T A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555759
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94DD8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T A9433T G10265A C14408T A19650G G21123T A23403G G24020A G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555797
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FAD1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555977
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F38B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T G5564T A9433T TAT9858- G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555994
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C3037T C6990T G9584T C10702T C14408T T16993C A23403G C25836T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555998
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T C16084T G17259T T19893C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556025
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F36D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T G5564T A9433T TAT9858- G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556060
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F37C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T G18651T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556095
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-95DB91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3569G C3695T A6211G A8659G C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556104
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-95DBA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C5183T C7926T G10097A C13536T C14408T C15026T G16228A C18747T A23403G C23731T C27999A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556176
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-95DBDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C2252A C3037T G11243T C14408T T18723C A20268G A20667G A23403G G25720T C27532T C28854T C29085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556211
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-95D900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C841T C1714T C3037T C8092T C14408T G18816T A20268G C21772T A23403G C28854T A29089C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556328
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F1AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A A8031G G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556361
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556380
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94ECFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556385
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94ECEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556429
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F1DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6016T G10097A C14408T C21639T A23403G C23731T GGG28881AAC C29311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556444
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F1FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A23403G C26029A C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556481
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6016T G6922T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558299
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-59718E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1442C C3037T C14408T G18674A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558450
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D009B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C16111T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558451
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CFE86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15544T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558472
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D9D40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1910G C3037T G3514T C8311T G10097A C11511T A11991G T12184C C14408T A17615G A23403G C23731T C25000T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558486
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D9A0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A605G C3037T A4328G A8072G C11919T C14408T T18909C A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558514
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D9AB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558519
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D9D13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C18526T C19269T A23403G C23655T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558531
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CFC40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7856T C14408T A16981G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558615
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5CF9EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1910G C3037T G3514T C8311T G10097A A11991G T12184C C14408T A17615G A23403G C23731T C25000T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558725
 2020-06-20 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5BF85E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1946T C3037T A3569G A6211G A8659G C14408T C15746T T18438C C19488T A23403G C26681T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568471
 2020-06-20 2020-10-01
 United Kingdom hCoV-19/Scotland/MILK-95D9E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10798A G12163A C13862T C14408T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT731661
 2020-06-20 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_180/2020
 C241T A1163T G2585T C3037T C3961T C14408T A19008C T20592C C21575T C21846T A23403G G23608T A24970G G25907T G26230T T26903C C28006G GGG28881AAC

MT731664
 2020-06-20 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_194/2020
 C241T C1288T C2048T C3037T G11521T T12607C C13255T C14408T G19824T A22193T A23403G G24368T GGG28881AAC

MT731665
 2020-06-20 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_203/2020
 C241T A1163T C3037T C14408T T20246C G20489T A23403G A23541T GGG28881AAC

MT740397
 2020-06-20 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_196/2020
 C241T A1163T C3037T C14408T A23403G GGG28881AAC

MT740403
 2020-06-20 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_195/2020
 C241T A1163T T2211C A2870G C3037T A8026G C14408T A23403G GGG28881AAC

MT740404
 2020-06-20 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_198/2020
 C241T C2453T C3037T T10371G C14119T C14408T A23403G G26199T G28321T GGG28881AAC

MT740431
 2020-06-20 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_181/2020
 C241T A1163T C3037T C6541T C8760T G11417T T12535G C14178T C14408T C15925T C18744T A23329T A23403G G28280T GGG28881AAC

MT740432
 2020-06-20 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_182/2020
 C241T C3037T C14408T C21595T A23403G GGG28881AAC

MT740480
 2020-06-20 2020-07-10
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_199/2020
 C241T A1163T G1727A C3037T C10340T G11083T G12566T C14408T C19813T C21058T A23403G G26211T GGG28881AAC

MT811492
 2020-06-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1056-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C6558T C14408T C16830T A20268G A23403G A28401T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811493
 2020-06-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1057-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G6422A C10319T C14408T T16926C A18424G A19974G C21304T G22225T A23403G G25563T G25907T C27964T C28472T C28869T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811494
 2020-06-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1058-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1386G C3037T G3971T G7393A C10156T C14408T A20268G C21595T A23403G T24076C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811495
 2020-06-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1059-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T G17014T A23403G G25563T A25822T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811496
 2020-06-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1060-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1593T T1983C G2914C C3037T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811497
 2020-06-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1061-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2881T C3037T C6628T C11572T C14408T C19550T A20268G A23403G A24667G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811498
 2020-06-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1062-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1486C C3037T G4925T T8426C G13617T C14408T C16887T C17285T G18816T A20268G A23403G T24076C G27226T C28854T G29468A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811499
 2020-06-20 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1063-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A4197G C14408T C15720T C17550T A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_477811
 2020-06-21 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B5018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477812
 2020-06-21 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B5027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T C3037T A3940G C14408T G20995T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_477813
 2020-06-21 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B5036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T G15006T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483476
 2020-06-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1036-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1486C C3037T G4925T T8426C C9943T G13617T C14408T C16887T C17285T G18816T A20268G A23403G T24076C G27226T C28854T G29468A

EPI_ISL_483477
 2020-06-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1038-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1135T C3037T G7393A A10028G C10416T C12049T C14408T G14743T A20268G A23403G C25578T C28854T T29293C

EPI_ISL_483478
 2020-06-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1039-SAN/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T G6422A C10319T C14408T T16926C A18424G A19974G C21304T G22225T A23403G G25563T G25907T C27964T C28472T C28869T

EPI_ISL_483479
 2020-06-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1042-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G1659T C3037T C14408T A20268G A23369C A23403G T24076C C27972A C28854T

EPI_ISL_483481
 2020-06-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1045-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C14821A C18060A G18907T A20268G C21662T C21711T A23403G C28854T G29374T

EPI_ISL_483482
 2020-06-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1049-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T A2015G C3037T A6360G C9541T G11083T C14408T C20629T A23403G C24502A GGG28881AAC

EPI_ISL_483483
 2020-06-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1050-SAN/2020
 ATTA1- C241T C3037T C12488T C14408T A22108G A23403G C25528T G27084A C28344T GGG28881AAC

EPI_ISL_483484
 2020-06-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1052-SAN/2020
 ATTAAAGG1- C241T C835T C3037T C14408T T18488C A20268G A23403G G24620T G27364T C28854T G28975T

EPI_ISL_483485
 2020-06-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1053-SAN/2020
 ATTAAAGGTTTATA1- C241T C835T C3037T C14408T T18488C A20268G A23403G G24620T G27364T C28854T G28975T

EPI_ISL_483534
 2020-06-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1111-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2143T A2596G C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483541
 2020-06-21 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1118-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_484955 MT750159
 2020-06-21 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2933T C3037T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484956 MT750160
 2020-06-21 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T T22657C A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489917
 2020-06-21 2020-07-14
 United States hCoV-19/USA/WI-GMF-07214/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T A23403G G25563T C28087Y AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_493696
 2020-06-21 2020-07-21
 United Kingdom hCoV-19/England/SHEF-CA9F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A27237G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493709
 2020-06-21 2020-07-21
 United Kingdom hCoV-19/England/SHEF-CD069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493987
 2020-06-21 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_494024
 2020-06-21 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C2638T C3037T C9442T C14408T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494041
 2020-06-21 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1667D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494055
 2020-06-21 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1668C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C2638T C3037T C9442T C14408T C21575T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494068
 2020-06-21 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1669EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C2638T C3037T C14408T TTT14659AAA A23403G C25339T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494070
 2020-06-21 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166A18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T G22427K A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494074
 2020-06-21 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166A63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494076
 2020-06-21 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166A81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494087
 2020-06-21 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166B7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C2638T C3037T C9442T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494089
 2020-06-21 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166BAC/2020
 ATTAAAGGTTTAT1- C241T C2638T C3037T C14408T G19962T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494105
 2020-06-21 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166D00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T A23403G A23570W GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494123
 2020-06-21 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166E85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494144
 2020-06-21 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-167042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_497287 MT831579
 2020-06-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2655/2020
 ATTAAAGGTTTATACCT1- C241T T833C C1059T C3037T G4583A C6548T C7860T C14408T T17108A G22592T T22921C A23403G G25537A G25563T C26822T C27964T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497288 MT831629
 2020-06-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2656/2020
 ATTAAAGGTTT1- C241T T833C C1059T C3037T C6548T C7860T C14408T T17108A G20033T A21619G G21985T G22592T A23403G G25537A G25563T C26822T C27964T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497289 MT831631
 2020-06-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2657/2020
 ATTAAAGGTTT1- C241T T833C C1059T C3037T C6548T C7860T C14408T T17108A G19802A G22592T T22921C A23403G G25537A G25563T C26822T C27964T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497290 MT831671
 2020-06-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2658/2020
 ATTAAAG1- C241T T833C C1059T C3037T C6472T C6548T C7860T C14408T T17108A G22592T A23403G G25537A G25563T C26822T C27964T G29527A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497292 MT831693
 2020-06-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2660/2020
 AT1- C241T C3037T C14408T C14768T C15933T T15939C G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_497297 MT831686
 2020-06-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2665/2020
 ATTAAAG1- C241T C3037T C11379T C14408T C15933T G16968T T19839C A21215G A23403G GGG28881AAC G29260T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497298 MT831752
 2020-06-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2666/2020
 C241T C3037T C6445T T12730G C14408T G16813A G16852T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_497315 MT831765
 2020-06-21 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2683/2020
 AT1- C241T A2127G C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_499457
 2020-06-21 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16957E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T T279Y C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T C15960T T19839C C22858Y A23403G G24586T C25275T G25552T GGG28881AAC T29607C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_501095
 2020-06-21 2020-07-30
 United States hCoV-19/USA/WA-UW-11279/2020
 ATTAAAGGTTTATA1- AAC34TTT C241T C1059T C3037T T8883C TT8885AA T11025A AGG13512TTA TA14222GC C14408T T19839C A20304C A23403G A24775T C28256T GGG28881AAC C29784T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501096
 2020-06-21 2020-07-30
 United States hCoV-19/USA/WA-UW-11293/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AACC34TTTA C241T C3037T T8883C TT8885AA AGG13512TTA TA14222GC C14408T C18486T A20268G T22162C A23403G C28854T -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501101
 2020-06-21 2020-07-30
 United States hCoV-19/USA/WA-UW-11538/2020
 ATTAAAGGTT1- AACC34TTTA C241T C335T C1059T C1545T C3037T C7081T C10188T G11234A TA14222GC C14408T G17893T C19017T T21146A T21886C A23403G C23638T T24982C G25563T C27964T A29770T C29870A

EPI_ISL_508290
 2020-06-21 2020-08-04
 India hCoV-19/India/IB12/2020
 C241T TGGTTG519- C1218T C3037T C8917T C14408T C21597T A23403G C27110T T27384C GGG28881AAC G29868A

EPI_ISL_508298
 2020-06-21 2020-08-04
 India hCoV-19/India/IB2/2020
 C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC

EPI_ISL_508301
 2020-06-21 2020-08-04
 India hCoV-19/India/IB23/2020
 C241T C3037T C4809T C13665T C14408T T14828C G15438T C21721T A23403G A28847T G29868A

EPI_ISL_509641
 2020-06-21 2020-08-05
 Spain hCoV-19/Spain/COV005153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C635Y C1601A C3037T C5784T T7897C C14408T A20268G A23403G C23664T C27982T G29734C C29754Y TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_512671
 2020-06-21 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C44A TCT47GAA C241T C3037T C4455T G7223A G10360A C14408T A23403G A25336T C25904T G26063T C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_513585
 2020-06-21 2020-08-13
 United Kingdom hCoV-19/England/KGHT-2684527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1946T C3037T A3569G A6211G A8659G C14408T T18438C C19488T A23403G C26681T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_513588
 2020-06-21 2020-08-13
 United Kingdom hCoV-19/England/KGHT-26844FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1946T C3037T A3569G A6211G A8659G C14408T T18438C C19488T A23403G C26681T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514944
 2020-06-21 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2541/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G27703T G29179T G29779T A29869G AAAAAAAAAAAAAAAA29888-

EPI_ISL_514945
 2020-06-21 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2542/2020
 A4- C241T C3037T C3990T T8604C C8917T G9092A G9389A A11438G C14408T C17818A A23403G C24370T AG28877TC GGG28881AAC

EPI_ISL_514948
 2020-06-21 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGC1- C241T A2869G C3037T A10829G C14408T G16377A C23191T A23403G C24382T GGG28881AAC C29095T A29871C AAAAAAAAAAAAAAAA29888-

EPI_ISL_514949
 2020-06-21 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTC1- C241T A2869G C3037T A10829G C14408T G16377A C23191T A23403G C24382T GGG28881AAC C29095T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514950
 2020-06-21 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCA1- C241T A2869G C3037T A10829G C14408T G16377A C23191T A23403G C24382T GGG28881AAC C29095T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514951
 2020-06-21 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCA1- C241T A2869G C3037T A10829G C14408T G16377A C23191T A23403G C24382T GGG28881AAC C29095T A29871G AAAAAAAAAAAAAAAA29888-

EPI_ISL_515267 MT897464
 2020-06-21 2020-08-18
 United States SARS-CoV-2/human/USA/MN-MDH-1458/2020
 ATTAAAGGTTTA1- C241T C3037T G9973A C10376T T13339C C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_516917
 2020-06-21 2020-08-24
 Israel hCoV-19/Israel/CVL5421/2020
 C241T C313T C1387T C3037T G3969A G4510A C8905T C14408T G15438T T17748A A20262G C20930T A23403G G25785T GGG28881AAC

EPI_ISL_521913 MT972140
 2020-06-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521925 MT972165
 2020-06-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2176/2020
 ATTAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521964 MT972160
 2020-06-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C583T C3037T C11824T C14408T C16915T C18877T G21569T C23277T A23403G T24202C G25563T C26735T G28899T

EPI_ISL_521965 MT972161
 2020-06-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- A79- C241T C1415T C3037T C14408T T16170C C18395T C18877T TAT22189- C22444T A23403G G25563T C26735T C27679T C28854T

EPI_ISL_521966 MT972162
 2020-06-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2229/2020
 ATTAAAGGTTT1- C19M C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521967 MT972163
 2020-06-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2230/2020
 AT1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_521968 MT972164
 2020-06-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2231/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_523023
 2020-06-21 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-15-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T5028A C17410T A22920T C26078T C26224T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523024
 2020-06-21 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-15-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T5028A C17410T A22920T TCTCTA25707- C26078T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523025
 2020-06-21 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-15-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T5028A C17410T A22920T C26078T G27390T A28284C A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523026
 2020-06-21 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-15-7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T5028A C17410T A22920T TCTCTA25707- C26078T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523027
 2020-06-21 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-15-8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T5028A C17410T A22920T C26078T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523029
 2020-06-21 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-16-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T T2926C C3037T G3251T C5173T G14274A C14408T A22920T A23403G A24862G C25936T C26013T ATATTAGTTTTTCTGTTTGG26487- G28237A C28471T GAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29711-

EPI_ISL_523030
 2020-06-21 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-16-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T T2926C C3037T G3251T C5173T G14274A C14408T A22920T A23403G A24862G C25936T C26013T ATATTAGTTTTTCTGTTTGG26487- C28471T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523031
 2020-06-21 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-16-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T T2926C C3037T G3251T C5173T G14274A C14408T A22920T A23403G A24862G C25936T C26013T ATATTAGTTTTTCTGTTTGG26487- C28471T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523032
 2020-06-21 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-16-14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T T2926C C3037T G3251T C4586T C11412T G14274A C14408T A22920T A23403G A24862G C25936T C26013T ATATTAGTTTTTCTGTTTGG26487- C28471T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523033
 2020-06-21 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-16-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T T2926C C3037T G3251T C5173T C5833A G14274A C14408T A22920T A23403G A24862G C25936T C26013T ATATTAGTTTTTCTGTTTGG26487- C28471T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_527014
 2020-06-21 2020-09-03
 Australia hCoV-19/Australia/NSW2429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T G11083T C14408T C22477T A23403G G23593T G25563T G29392C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_529909 MT992724
 2020-06-21 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1102/2020
 ATTA1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_529910 MT992725
 2020-06-21 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_543697
 2020-06-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-4531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1813A T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543698
 2020-06-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-4532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T C25267T C25553T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543700
 2020-06-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-4534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543712
 2020-06-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-4552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T T27656C C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543717
 2020-06-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-4559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A4044C C10319T C14408T A18424G C20483T C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543723
 2020-06-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-4569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C13115T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543725
 2020-06-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-4571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3811T G4521T G13897T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543732
 2020-06-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-4582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1685A T2228C C3037T C14408T C16163T A17805G A23403G T24380G C24588G C27247T T28031C GGG28881AAC A29307C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543734
 2020-06-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-4584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C G12211A C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543735
 2020-06-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-4585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13618T C14408T C20474T A23403G GGG28881AAC C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543737
 2020-06-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-4587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T T11134C C14408T A18535G C19011T C21767T A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543740
 2020-06-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-4593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T C14408T A17709G T18231C A23403G G28079T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543756
 2020-06-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-4615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G11335A C14408T G19340T A23223T A23403G G25563T C27964T G29759T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543760
 2020-06-21 2020-09-23
 United States hCoV-19/USA/TX-HMH-4619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7011T C7119T C9967T G10902A C14408T C17766T A23403G G25563T C27964T C29281T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544249
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13576T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544264
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6843T C10319T C14408T G16014A T17353C C23315T A23403G G25563T G25641T A27510T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544309
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1820A C3037T C14408T G15452T G17151T A23403G G25563T C29025T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544314
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G C23481T C27575T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544356
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G C14408T G20578T A23403G C28278A GGG28881AAC G29224T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544364
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544370
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544372
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T G25907T T26903C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544377
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14676T A23403G G25647T T27722C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544380
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C3037T C4084T C14408T G18412T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544384
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544412
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544421
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2969G C3037T G4913T G8131T C14408T C17104T A23403G G23426T G25563T G26389T C27964T T27992C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544422
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T C20825T A23403G C24718A C25096T C26606T T27212C G27561T C27600T C29421T C29545T C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544430
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544436
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-4984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5840C C14408T G14831T C16260T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544466
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-5020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544498
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-5063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T T27656C C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544508
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-5078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T G5690A C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544512
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-5083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T A4851G C4931A G9479T C14408T C17119A C18508T C23191T A23403G C23638T G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544514
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-5086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7869T A10323G C14408T T15276A G19684T A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544523
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-5098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6926T C11916T C14225A C14408T C14877T C18998T T22387C A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544542
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-5127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A23403G A23947G G25563T T26187C C26469G G26828T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544548
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-5132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1813A T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544562
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-5153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1150T C3037T C10319T C14408T C17977T A23403G G24812T G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544568
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-5161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544578
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-5179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11876A C14408T G15406T C17118A T19839C A23403G G26840T T26975C C28833T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545744
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-7962/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G C23551T G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547322
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-6219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T T21942C A23403G G25563T C27297T C28821A C28957T G29405C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547365
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-6286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1507C C3037T T9779C C10319T C14408T A23403G C23589T C24919T G25563T G25641T C27964T C28849T G29204A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547397
 2020-06-21 2020-09-24
 United States hCoV-19/USA/TX-HMH-6333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17012T C17639T A23403G C25480T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548132
 2020-06-21 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20VR3755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5298T C14408T G16245T G16741A A20268G C21928T A23403G G25726C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551355
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9389FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5826T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551360
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9387E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C3037T A9433T G10265A G11065C C14408T A19650G G21538A A23403G G24095A G25407T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551379
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9387F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G25352T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551395
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-937B60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C22498T A23403G C26801T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551408
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92CFAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G315A C3037T T3154C T4885C T5306C G11230T C14408T G21724T C22326T A23403G G23587C G24781A GGG28881AAC G29033T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551411
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92D2E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551425
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-938A80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551426
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-936FDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683Y T10453C C11195T C14408T G14866R T19590Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551427
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-93890B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551441
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-936985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4006A C6428T C6681T C7162T C10626T C14408T G15438T C19164T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551449
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9378E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C1915T G2585R C3037T G6476T C8140T G10097A G11083T T13216G C14408T C18606T A23403G C23731T C25708T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551457
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-938B32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C22550T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551478
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-93679A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G9854R G10097A C10369T C13536T C14408T A17063G G19723R C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551505
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92D17A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1282T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551507
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92D14D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G315A C3037T T3154C T4885C G11230T C14408T G21724T C22326T A23403G G23587C G24781A GGG28881AAC G29033T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551508
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92D1F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551525
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-933D40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G G25563T G28001A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551552
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-936FFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552797
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-935C6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G G24872T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552799
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93A0E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3338T C3511T T13678C C14408T G16558T A22301G A23403G C27393T G29508A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552802
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93A462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3569G C3695T A6211G A8659G C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552806
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-93138C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G17049T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552811
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93CFE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1387T C3037T C14408T C18714T C22564A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552815
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9353B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C8597T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552823
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93873E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552824
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-93719B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T G10097A C14408T A19946G C22987Y A23403G G23501K C23731T G24193C C26735Y G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552825
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-936B07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623C C3037T C4577T A5582G T7009A C14408T A23403G C27046T C27143T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552829
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-935B08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1214A C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552835
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-935959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C25916T C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552837
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9355A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4801G G7675T T8908C G11801A C14408T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552842
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93F5C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T T17353C A23403G C25844T C28087T GGG28881AAC C29160T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552846
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-93732C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7877G T11798C C14408T C16289T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552852
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93D13B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16092T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552860
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9358E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A A28482R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552864
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92CAF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C14408T A21137G A23403G G25429T G26062T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552865
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-935625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4328G A8072G C11919T C14408T T18909C A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552867
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93D11D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9559T G10265A C14408T C16887T A23207G A23403G G24872T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552875
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93DE34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4320T -11075TTT G11083T C14408T A16615G G16861T C20844T A23403G G25563T C25688T C26882T T27539C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552879
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93BA32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C3817T C14408T A23403G G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552881
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-937C7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552896
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-937016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552899
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-935BBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1214A C3037T A9433T G10265A C14408T A19650G A23403G G25947S C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552902
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-935AA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552903
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-935564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4328G A8072G C11919T A13364C C14408T T18909C A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552904
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9317F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552907
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-931674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A23403G C26029A C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552910
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93B73B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T A3627W C3817T C14408T G21004K A23403G C25160T G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552919
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-935E2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552921
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-936E2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15738T T18260C A20712G A23403G G25429T C25611T T26418C C29025T C29585T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552925
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-935ACF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C8986Y C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552926
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-931270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C506T C3037T A3421G C4002T T4714C G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552928
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-939CC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552933
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9348B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T C3037T C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552934
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-936BE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C534T C854T C3037T G5716T T10453C C11195T C14408T G14428T A21860T A23403G C27920Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552936
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93D3BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G G24872T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552937
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-93578C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552938
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93D678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14322T C14408T A23403G C25669T GGG28881AAC A29222C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552939
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93D10E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G C28698T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552945
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9336BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552947
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93BB8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T C20148T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552949
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93D3EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1387T C3037T C14408T C18714T C22564A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552950
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93C0B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T11164G C14408T G15406T G21538T G22332A A23403G G25429T G27583T G29427K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552953
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-93AF16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552956
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-935555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C534T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552957
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-939ECF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C22550Y A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552964
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-933BBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C14408T C21637T A23403G A28169G GGG28881AAC G29557C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552969
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92CAE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C14408T A21137G A23403G G25429T G26062T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552970
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-9362B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T T20653Y G21624T A23403G G27877T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552977
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-935D8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552978
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-934802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3876T C4002T G10097A C11572T C13536T C14408T A23403G C23731T G25909T GGG28881AAC G28895T C29367T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552979
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93C828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1971C C3037T G10265A C14408T A23403G G26803T G27364T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552982
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-919C9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6701T A11595G T13880C C14408T C14741T C16178T G21624T C22997T A23403G T24923C G25459T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552984
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-93153B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T T5507A C11074T G11083T C14408T A20268G G21010A C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552988
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-933A76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G25912T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552990
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93F2BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T T17353C A23403G C25844T C28087T GGG28881AAC C29160T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552994
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-933830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G4643R C9344Y G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552995
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93A1E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G9479T G10097A C13536T C14408T A23403G C23731T T24063C G25409T A25948G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552999
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-931735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A23403G C26029A C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553003
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9358C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T T1606C C3037T C4002T G10097A C11704T C13536T C14408T G16558T C21952T A23403G C23731T GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553005
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-935E4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553270
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93CAC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25217T C25350T T25899C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553275
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93E413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC C29743T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553276
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93C9F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G C19662Y G21123T A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553295
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-93C873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6324G A9433T G10265A C14408T C14520T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553456
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-954B6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C100T C241T C3037T A3569G A6211G C7164Y A8659G C14408T C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553707
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-93A875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C22498T A23403G C26801T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554085
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-952A44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5924A C14408T G16852T G18984T T21775G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554866
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C7DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2110T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554876
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C8B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554889
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2675T C3037T C14408T C20235T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554934
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C1EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554971
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CA95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554974
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CAA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G G25302T C25703T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_554986
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CA86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555032
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T A1305M C3037T C5654T G5716T T10453C C11195T C14408T G14428T A23403G C25658T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555065
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C8AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T T22831C A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555081
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C7E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C7119T T9292C A9713G T13827C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555112
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4563T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555113
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CAC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555175
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556077
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-95D86D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3338T C3511T T3718C T13678C C14408T G16558T A22301G A23403G C27393T T29278Y G29508A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556097
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-95D7CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A652G C1170T C3037T C4002T C7420T G10097A G11083T C13536T C14408T A23403G C23731T GGG28881AAC C29738T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556170
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-95D7D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T G2078A C3037T C14408T C18877T A23403G T24596C G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556208
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-95D830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C13548T C13730T C14408T A15942G G23120T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556251
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-95D8A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3338T C3511T C14408T A22301G A23403G G29508A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556293
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-95D8E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C556T C1912T C3037T G3692T C4002T G9479T C9611T G10097A C13536T C14408T G21220T A23403G C23731T T24063C A25948G C27476T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556613
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-90B0A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C G21641T A23403G G24586T C25275T G25552T GGG28881AAC T29607C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558510
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D58DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1306T C3037T C14408T T21147A C21637T A23403G G27967T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558753
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-5AED35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2488T C2610T C3037T C3551T T5573C C6380T C7420T G11801A C14408T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558832
 2020-06-21 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5BD42F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11083T C14408T C16996T A23403G C26894T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810591
 2020-06-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1111-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T A2596G C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810598
 2020-06-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1118-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811483
 2020-06-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1036-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A1486C C3037T G4925T T8426C C9943T G13617T C14408T C16887T C17285T G18816T A20268G A23403G T24076C G27226T C28854T G29468A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811484
 2020-06-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1038-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1135T C3037T G7393A A10028G C10416T C12049T C14408T G14743T A20268G A23403G C25578T C28854T T29293C CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811485
 2020-06-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1039-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G6422A C10319T C14408T T16926C A18424G A19974G C21304T G22225T A23403G G25563T G25907T C27964T C28472T C28869T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811486
 2020-06-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1042-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G1659T C3037T C14408T A20268G A23369C A23403G T24076C C27972A C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811488
 2020-06-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1045-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C14821A C18060A G18907T A20268G C21662T C21711T A23403G C28854T G29374T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811489
 2020-06-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1049-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- A2015G C3037T A6360G C9541T G11083T C14408T C20629T A23403G C24502A GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811490
 2020-06-21 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1050-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C12488T C14408T A22108G A23403G C25528T G27084A C28344T GGG28881AAC CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

EPI_ISL_477180
 2020-06-22 2020-06-29
 Singapore hCoV-19/Singapore/268nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483495
 2020-06-22 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1065-SAN/2020
 C241T C3037T T6199A G7675T C14408T G17679A G17790T C18457T G19969A A20268G A23403G C28854T A29436T C29730T

EPI_ISL_483496
 2020-06-22 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1066-SAN/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483497
 2020-06-22 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1067-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G6422A C10319T C14408T T16926C A18424G A19974G C21304T G22225T A23403G G25563T G25907T C27964T C28472T C28869T

EPI_ISL_483499
 2020-06-22 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1070-SAN/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C1758T C3037T C5183T C12534T C14408T G16795T A22320G A23403G G25563T

EPI_ISL_483500
 2020-06-22 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1072-SAN/2020
 ATTAAAGGTTTATACC1- C241T C3037T C9195T C14408T G16245T G16741A A20268G C21928T A23403G G25726C C28854T

EPI_ISL_483503
 2020-06-22 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1076-SAN/2020
 ATTA1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483504
 2020-06-22 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1077-SAN/2020
 AT1- A34T C241T C1059T C3037T C14408T C16260T C16575T C20032T G22484T A23403G G25563T C27371T C28821A

EPI_ISL_483509
 2020-06-22 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1082-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T3011C C3037T G5704T C14408T G22205T G22484T A23403G G23611T T27869C T28853G

EPI_ISL_483535
 2020-06-22 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1112-SAN/2020
 ATTAAA1- C241T C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483619
 2020-06-22 2020-07-08
 Singapore hCoV-19/Singapore/596/2020
 ATTAA1- C6310A C6312A G8174A G11083T C13730T C16694T C19524T C23185T C23929T G28180T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483913
 2020-06-22 2020-07-08
 United Kingdom hCoV-19/England/CAMB-1B5124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1620G C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484683
 2020-06-22 2020-07-08
 United Kingdom hCoV-19/Scotland/EDB6608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T G7065T C7815T C14408T A20268G G22363T C22995A A23403G T26972C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484684
 2020-06-22 2020-07-08
 United Kingdom hCoV-19/Scotland/EDB6609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G G22363T C22995A A23403G T26972C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484919 MT750124
 2020-06-22 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C10279T C14408T G19677T G20056A A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484957 MT750161
 2020-06-22 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9120T C14408T A19899T A21464G A23403G G25444A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484958 MT750162
 2020-06-22 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C A5553G C7823T C11074T C14408T G21438T A23403G C25710T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484960 MT750164
 2020-06-22 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1471T C3037T A7807G C11916T A12820G C14408T A23403G G25563T T28372C C29733T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484963 MT750167
 2020-06-22 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T T27384C C28892T G29766T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484986 MT750187
 2020-06-22 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C G11596T C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484987 MT750188
 2020-06-22 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G2036T C3037T G11204A C11916T C14408T G23311T A23403G A23586G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484988 MT750189
 2020-06-22 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484990 MT750191
 2020-06-22 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486501 LR860614
 2020-06-22 2020-07-10
 Switzerland hCoV-19/Switzerland/160002_436_A06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G1590R A3027M C3037T G3062R T3568Y G3621R A3643R C12789Y C14408T G18525K C19524T G22205C A23403G C25731T GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_487266
 2020-06-22 2020-07-13
 United States hCoV-19/USA/UT-07024/2020
 A1- C241T C959T C1059T C3037T G10947A C14408T G14857T C15352T C21364T A23403G C24378T G25563T C26645T TTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACAC27701- C27964T C29095T

EPI_ISL_487270 MT745584
 2020-06-22 2020-07-13
 Bahrain SARS-CoV-2/human/BHR/340217593/2020
 ATTA1- C241T C2416T C2937T C3037T G8371T C14408T G18782T A23403G G25563T G26065C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_487272 MT745767
 2020-06-22 2020-07-13
 Bahrain SARS-CoV-2/human/BHR/920267586/2020
 ATTA1- C241T C2416T C2937T C3037T G8371T C14408T C22326T A23403G G25563T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_489834
 2020-06-22 2020-07-14
 Spain hCoV-19/Spain/HUB-56592455
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1377T C3037T C14408T A20268G A23403G C27476T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489918
 2020-06-22 2020-07-14
 United States hCoV-19/USA/WI-GMF-07392/2020
 ATTAAAGGTTTATACC1- C241T C715T C1059T G2036T C3037T C11916T C14408T AA21550MW G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489920
 2020-06-22 2020-07-14
 United States hCoV-19/USA/WI-GMF-07403/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C715T C1059T G2036T C3037T C4686T C11916T C14408T AA21550MW G23311T A23403G A23586G G25563T GC27882SY AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_491715
 2020-06-22 2020-07-17
 United Kingdom hCoV-19/England/202881380/2020
 C241T C3037T C7165T G10265A C14408T C15720T A15972G C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC

EPI_ISL_491716
 2020-06-22 2020-07-17
 United Kingdom hCoV-19/England/202881382/2020
 G1397A G2246A C5512T G11083T G13558K C20132T A23586G C26822T T27384C T27484C T28688C G28975T G29639T G29742T

EPI_ISL_493352
 2020-06-22 2020-07-21
 Norway hCoV-19/Norway/2781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323A C14408T C18864T A23403G C26985T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494017
 2020-06-22 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-16659F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T A1547W C2638T C3037T C3096Y C14408T GA23402RG GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_494079
 2020-06-22 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166ADC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C14408T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_494090
 2020-06-22 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166BBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T A489G C3037T T5465C G6387A C7860T C12116T C14408T G21624T A23403G G24102A C24442T AA25800TT GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494128
 2020-06-22 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166ED0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T A23403G G25281T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_497300 MT831553
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2668/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C10292A C14408T C14768T C15933T G16968T C17747T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497301 MT831676
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2669/2020
 ATTAAAGGTT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497302 MT831760
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2670/2020
 AT1- C241T C1204T G1747A C3037T C5643T C5730T C14408T C16289T C18570T A23403G G25429T C26527T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497304 MT831625
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2672/2020
 AT1- C241T C1204T G1747A C3037T C5643T C5730T C14408T C16289T C18166T C18570T A23403G G25429T C26527T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497305 MT831755
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2673/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C15933T G16968T G18394T T19839C A23403G G26065T GGG28881AAC C29330T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497306 MT831541
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2674/2020
 A1- C241T C3037T G4207T G13505T C14408T C14768T C15933T G16968T T19839C G21724T G21985T A23403G C27649G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_497307 MT831646
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2675/2020
 AT1- C241T C3037T C14408T C15933T G16968T G18394T T19839C A23403G G26065T GGG28881AAC C29330T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_497308 MT831670
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2676/2020
 A1- C241T C3037T C3992T G4510T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497310 MT831853
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2678/2020
 AT1- C241T C1441T G2305T C3037T C4582T C13860T C14408T C15960T A20268G A23403G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497311 MT831822
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2679/2020
 ATTAAAGGTTT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C G21724T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497316 MT831699
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2684/2020
 AT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C A23403G C26447T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497317 MT831695
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2685/2020
 ATTAAAGGTTTAT1- CG241TT C3037T C5020T C9443T C12897T C14408T C18086T T19839C C20970T A23403G C27371T GGG28881AAC T29821G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497318 MT831791
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2686/2020
 A1- CG241TT C3037T C14408T C18086T T19839C A23403G GGG28881AAC C29247T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_497319 MT831550
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2687/2020
 C241T C3037T G3340T G8075A A12199G C14408T C15933T G16968T T19839C C22675T A23403G C27828T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497321 MT831617
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2689/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G G25313A C27110T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_497322 MT831597
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2690/2020
 AT1- C241T C3037T G3452A C3992T G4510T C8311T C14408T C15933T T19839C A23403G T25451C GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497323 MT831664
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2691/2020
 AT1- C241T C3037T G8075A G10996T A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497324 MT831604
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2692/2020
 ATTAAAGGTTTA1- C241T C3037T A4372G C5365T A6293G C14408T C15933T G16968T G19009T T19839C A23403G G24193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497325 MT831602
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2693/2020
 ATTAAAGGTTTAT1- C241T C3037T A4372G C5365T A6293G C14408T C15933T G16968T G19009T T19839C A23403G G24193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_497326 MT831659
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2694/2020
 AT1- C241T C3037T A4372G C5365T A6293G C14408T C15933T G16968T G19009T T19839C A23403G G24193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497327 MT831563
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2695/2020
 A1- C241T C3037T A4372G C5365T A6293G C14408T C15933T G16968T G19009T T19839C A23403G G24193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_497329 MT831582
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2697/2020
 ATTAAAGGTTT1- C241T C3037T A4372G C5365T A6293G C10078T C14408T C15933T G16968T G19009T T19839C A23403G G24193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497330 MT831662
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2698/2020
 AT1- C241T C3037T C14408T C15933T G16968T C18747T A19671G T19839C A23403G G25019T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_497331 MT831614
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2699/2020
 A1- C241T C3037T G8075A A12199G C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_497332 MT831770
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2700/2020
 A1- C241T C3037T C14408T C14768T C15933T G16968T T19839C G21724T A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_497335 MT831784
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2703/2020
 ATTAAAGGTTTAT1- C241T G1661T C3037T C6445T C14216T C14408T G16813A T19395C A23403G C23604T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497337 MT831575
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2705/2020
 A1- C241T C3037T A4372G C5365T A6293G C14408T C15933T G16968T G19009T T19839C A23403G G24193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497339
 2020-06-22 2020-07-24
 United States hCoV-19/USA/WA-S2707/2020
 AT1- C241T C3037T C13356T C14408T C15933T G16968T T19839C A23403G C26873T C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497340 MT831732
 2020-06-22 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2708/2020
 ATTAAAGGTTTAT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_497770
 2020-06-22 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C2416T C3037T G8371T G11083T C12053T C14408T G17815A C18452T G19455A A21165G C21855T C22477T A23403G G25563T T26711G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498569
 2020-06-22 2020-07-27
 Singapore hCoV-19/Singapore/671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T CG21304MR C23929T T26957C C28311T G29616T AAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29796-

EPI_ISL_499974
 2020-06-22 2020-07-28
 United Kingdom hCoV-19/England/LCST-24D71C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499975
 2020-06-22 2020-07-28
 United Kingdom hCoV-19/England/LCST-24D71D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500539
 2020-06-22 2020-07-29
 Singapore hCoV-19/Singapore/733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1489T C4893T C6310A C6312A G11083T A11228G C13730T C19524T C23185T C23929T A24915T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500540
 2020-06-22 2020-07-29
 Singapore hCoV-19/Singapore/734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C75T A3951G C6310A C6312A G9500A G11083T G13397T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500550
 2020-06-22 2020-07-29
 Singapore hCoV-19/Singapore/729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G9500A G11083T C13730T C13740T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500551
 2020-06-22 2020-07-29
 Singapore hCoV-19/Singapore/730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1594T C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500552
 2020-06-22 2020-07-29
 Singapore hCoV-19/Singapore/731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3261T C6040T C6310A C6312A C10747T G11083T C11460T C13730T C15277T C19524T C23520T C23929T T27499C C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500553
 2020-06-22 2020-07-29
 Singapore hCoV-19/Singapore/732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G9500A G11083T C13730T C13740T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500562
 2020-06-22 2020-07-29
 Singapore hCoV-19/Singapore/748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3951G C6310A C6312A C6633T G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501099
 2020-06-22 2020-07-30
 United States hCoV-19/USA/WA-UW-11455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- A34T C36T C241T C3037T G7360T C13994T C14408T C15933T G16968T T19839C A20055G C21859T A23403G G25691T GGG28881AAC C29784T G29862A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_507959
 2020-06-22 2020-08-03
 United States hCoV-19/USA/MN-MDH-1371/2020
 AT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C16260T A23403G G23900C A24253T G25563T C28821A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_508503
 2020-06-22 2020-08-04
 India hCoV-19/India/TF30/2020
 A12G A22T T224C C241T C313T C657T T1947C T2484C C3037T C6310T C14408T C18877T C20736T C22444T A23403G G25563T C26735T C28854T

EPI_ISL_509601
 2020-06-22 2020-08-05
 Spain hCoV-19/Spain/COV005155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T ATG1605- C3037T T3682C C4456T G6611T C10252T TCTGGTTTT11288- C14408T C19032Y TTA21991- A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509642
 2020-06-22 2020-08-05
 Spain hCoV-19/Spain/COV005154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_509820 MT846504
 2020-06-22 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1439A C3037T A6088G C14408T T15354C C15356T T17150C C18877T C19529T C22227T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509996
 2020-06-22 2020-08-05
 United States hCoV-19/USA/WI-UW-811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T G1727- C3037T C14408T T16479C A16541G C21627T A23403G G23518A G25563T C27964T C28770T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510890
 2020-06-22 2020-08-07
 Portugal hCoV-19/Portugal/PT1522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C7165T C14408T A19182G A23403G C25046T G27014T G27877T G28621T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_511973
 2020-06-22 2020-08-10
 United Kingdom hCoV-19/England/BRIS-133012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T A16142G A22069G G26144T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512148
 2020-06-22 2020-08-10
 United States hCoV-19/USA/AK-PHL575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6566T G8861A G10265A C14408T A15972G C17678T A17864G C19718T C21575T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512555 MT893667
 2020-06-22 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0749/2020
 ATTA1- C241T C815T C3037T C3411T T10795C T13447C C14408T G16912T G17721T C18452T A23403G G25437T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_512556 MT893668
 2020-06-22 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0750/2020
 ATT1- C241T C3037T T11675C C14408T T22843C C23185T A23403G C25452T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_512559 MT893671
 2020-06-22 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0753/2020
 ATTAAA1- C241T C1059T G1685A C3037T C10188T C14408T G17122T C18570T C19151T A20431G T22220C A23403G T24982C G25563T C27964T C29013A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_514188 MT890321
 2020-06-22 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0842/2020
 ATT1- C241T C1059T C2536T C3037T C10376T C14408T C14931T A23403G C24082T G25563T C27005T A28880G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_514189 MT890322
 2020-06-22 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2536T C3037T C10376T C14408T C14931T A23403G C24082T G25563T C27005T A28880G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_514946
 2020-06-22 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2543/2020
 ATTA1- C241T C3037T A4761G C10030T C13946T C14408T C18928T A23403G GGG28881AAC G29862A T29867G C29870-

EPI_ISL_514947
 2020-06-22 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2544/2020
 ATTAAAGGTTTATA1- C241T C3037T A4761G C10030T C13946T C14408T C18928T A23403G GGG28881AAC G29864A T29867A

EPI_ISL_514953
 2020-06-22 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2550/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16375T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_514954
 2020-06-22 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2551/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_514955
 2020-06-22 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2552/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_515263 MT897460
 2020-06-22 2020-08-18
 United States SARS-CoV-2/human/USA/MN-MDH-1454/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T G5612T C6040T C8140T C8208T C14408T C15952T C16260T A23403G G25440T G25563T C28821A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515922
 2020-06-22 2020-08-20
 United States hCoV-19/USA/CA-CDPH031/2020
 AT1- C241T C539T C3037T A3249G C4582T C10748Y C11102T C14408T A20268G A23403G C29445T

EPI_ISL_516800
 2020-06-22 2020-08-23
 Indonesia hCoV-19/Indonesia/YO-202449/2020
 C241T C3037T C5184T C10507T C14408T C18744T C18877T A23403G G25563T C26735T A26867G

EPI_ISL_520615 MT970277
 2020-06-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3903/2020
 ATTA1- C241T A1163T C3037T C4795T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T28351C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521918 MT972172
 2020-06-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521927 MT969386
 2020-06-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_521969 MT972166
 2020-06-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2232/2020
 ATTA1- C5544T C6026T C6543T G6865T C8782T G11230T T28144C G28167A G28878A G29742A

EPI_ISL_521971 MT972168
 2020-06-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C8327T G10097A C13620T C14408T C21365T C22388T A23403G

EPI_ISL_521989 MT969408
 2020-06-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522055 MT972185
 2020-06-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_524744
 2020-06-22 2020-08-28
 India hCoV-19/India/GJ-GBRC-384a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T AA3829GC T3873A C18877T C21541G C22444T A23403G C23997T T24811A G25563T C26735T T27164G C28854T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_524745
 2020-06-22 2020-08-28
 India hCoV-19/India/GJ-GBRC-384b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T T14501C T21582C A23403G G23663A T24811A C26735T C26822T T27164G C28854T T29335C TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807-

EPI_ISL_524911
 2020-06-22 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T G7936T C14408T G15908A A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524938
 2020-06-22 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T G3403T C6541T C11379T C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524946
 2020-06-22 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C5884T G7936A C13487T C14408T C16887T G17562T C22858T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524955
 2020-06-22 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T T1357G C3037T C9360T A12110G C13261T C14408T C14657A GG15907TA A22320G A23403G G25563T C27964T G28882T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524969
 2020-06-22 2020-08-28
 United States hCoV-19/USA/UT-UPHL-2009376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T T833C C1059T C3037T G6443A C14408T A22320G A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525760 MT946896
 2020-06-22 2020-08-31
 United States SARS-CoV-2/human/USA/AK-PHL561/2020
 ATTAAAGGTTTAT1- C66T C241T A538G C1059T C3037T T4324G T9107C G10262T C11094T C14408T G19999T C23029T A23403G G25563T T26543A A28254G C29358A C29466T A29876C AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_525902
 2020-06-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T A4834G C14408T A20268G A23403G C28854T

EPI_ISL_525903
 2020-06-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4834G C14408T A20268G A23403G C28854T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_525904
 2020-06-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10793T C14408T C18877T A23403G A25076G G25563T G25660C C26192T G27613A

EPI_ISL_525905
 2020-06-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1927C C3037T C10319T C14408T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T

EPI_ISL_525906
 2020-06-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0811/2020
 ATTAAA1- C241T A808T C3037T C8818T C14408T C15952T G20980A G21724T A23403G

EPI_ISL_528745
 2020-06-22 2020-09-09
 Indonesia hCoV-19/Indonesia/JB-TFRIC19-R24754/2020
 A1- C241T T1623C C3037T A5725T A8446G C14120T C14408T C15141T C18877T G19539T A23403G G25563T C26735T AAAAAAAAA29895-

EPI_ISL_540959
 2020-06-22 2020-09-22
 Peru hCoV-19/Peru/LIM-UPCH-0081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C8782T T12364A A19719T C26088T T28144C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_541737
 2020-06-22 2020-09-23
 India hCoV-19/India/MH-NIV-73012/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3828T C5700A T8176A G11634T G11939A C14408T C21575T C21621T A23403G C25075A C27149T GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541738
 2020-06-22 2020-09-23
 India hCoV-19/India/MH-NIV-73500/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C14408T C17999T C20384T A23403G G25677T GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541739
 2020-06-22 2020-09-23
 India hCoV-19/India/MH-NIV-74837/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C12003T A12393G C14408T C17002T C21575T A23403G G28376A GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_543696
 2020-06-22 2020-09-23
 United States hCoV-19/USA/TX-HMH-4530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1820A C3037T C14408T G15452T G17151T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543701
 2020-06-22 2020-09-23
 United States hCoV-19/USA/TX-HMH-4536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T C5284T C6696T C8357T G11417T C14408T T16425G C17639T A23403G G25563T C26455T G27226T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543715
 2020-06-22 2020-09-23
 United States hCoV-19/USA/TX-HMH-4556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543729
 2020-06-22 2020-09-23
 United States hCoV-19/USA/TX-HMH-4579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C G11083T C14408T C17639T C21627T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543762
 2020-06-22 2020-09-23
 United States hCoV-19/USA/TX-HMH-4623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4890T C5055T C14408T T20769C C22444T G23224T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543763
 2020-06-22 2020-09-23
 United States hCoV-19/USA/TX-HMH-4624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25019T G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543768
 2020-06-22 2020-09-23
 United States hCoV-19/USA/TX-HMH-4630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T T13963C C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543770
 2020-06-22 2020-09-23
 United States hCoV-19/USA/TX-HMH-4632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A A2568G C3037T G3251T T9742C C14408T G17338T C17639T A23403G G27706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543773
 2020-06-22 2020-09-23
 United States hCoV-19/USA/TX-HMH-4636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543782
 2020-06-22 2020-09-23
 United States hCoV-19/USA/TX-HMH-4654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G G20489T C21304T A23403G A23845G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_543785
 2020-06-22 2020-09-23
 United States hCoV-19/USA/TX-HMH-4659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6926T C11916T C14225A C14408T C14877T C18998T T22387C A23403G G25563T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544240
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26718T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544242
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G C26195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544245
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6354T G6421T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544254
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2110T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544265
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7869T A10323G C14408T T15276A G19684T A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544275
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4890T C5055T C14408T T20769C C22444T G23224T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544282
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1495T C3037T T7332C T7831A A9634T G11083T C11379T C14408T A23403G G25563T C25638T G28845T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544283
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544318
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C29614T G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544325
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6304G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544334
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8296C C14408T C16887T C17372T C18877T A23403G C24502T G25563T G28027T G28209T G28690T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544351
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544352
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544355
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C12854T A13526C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544359
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10626T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544365
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544369
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G18677T A23403G G25563T C27964T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544371
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544373
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544374
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11758T C13989T CC14407TT C16260T C17550T A23403G G25563T C25665T C25844T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544387
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T C23111T A23403G A23947G G25563T T26187C C26469G G26828T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544390
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T19284C A23403G C24718A G25785T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544391
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544394
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C4560T A4860G C6070T G11083T C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544397
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T6691C T9742C C10626T G13726A C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544403
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373T G7798T C8092T T11134C C14408T C19011T A23403G G25819A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544404
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C292T C1059T C3037T C14408T C18877T C20178T A23403G G25563T C26735T C28310T C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544416
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T T11134C C14408T A18535G C19011T A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544425
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544439
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C853T C1059T C3037T A10323G C12897T C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544440
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-4989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T A23403G G25563T G26314A G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544461
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544473
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T9106C A10323G C14408T T15276A A23403G C24198T G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544483
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10202T C14408T G22487C C23191T A23403G G25563T C26111T G27987T G28085A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544505
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544513
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C11575T C14408T C17304T A18468C C19032T C20115T A20262G G21305A T22408G A23403G G25563T C27964T T28105C C28868T G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544522
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13168T C14408T C16163T C17976T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544541
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14676T A23403G G25647T T27722C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544551
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6421T A10323G C14408T T15276A C15960T A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544556
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544576
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544596
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T4265A T9742C C14408T C17639T C23373T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544601
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2618G C3037T C11747T C14408T C15540T C20474T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544658
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12171T C14408T G15438T A18818G A23403G G25494T G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544873
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8140T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544882
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3431T C7299T C10319T C14408T C14768T C21682T A23403G G25481T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544890
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T G19162T C21614T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544903
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A C14408T A23403G G24893C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545708
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-7920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28167A G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546069
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-6543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T T25689A C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546120
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-6615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25019T G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546129
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-6627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13576T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547074
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-5866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T G4207T C14408T C16017T A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547205
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-6063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2102T C3037T C5339T C6606T A8580T C10188T G12332T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547286
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-6167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T T14067C C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T T27656C C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547294
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-6178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1997T C3037T A10323G C14408T T15276A A23403G T24544C G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547313
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-6208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9474T C10319T C14408T A18424G C19269T C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547315
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-6212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547324
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-6223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2102T C3037T C5339T C6606T A8580T C10188T G12332T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547328
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-6230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547335
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-6242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6905G G11335T C13994T C14408T C17518T G21468T G21724T G23120T A23403G G25563T C25667T C27603T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547348
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-6263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2102T C3037T C5339T C6606T A8580T C10188T G12332T C14408T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547350
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-6265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C G10360A C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547360
 2020-06-22 2020-09-24
 United States hCoV-19/USA/TX-HMH-6279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T22175G C23191T A23403G G25563T C28603T A29396C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551357
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90B8D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A A935G C3037T C5482T C14408T C17762T G17944T C18747T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551363
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9065A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6633T G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551370
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90C78E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6633T G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551371
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92ACA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4803G G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551372
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9101A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G A23403G G24764A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551373
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92BD2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A15572R C15720Y C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551387
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92AEFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1214A C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551389
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92B112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8650T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551390
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92BB50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551391
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90B488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096Y A9548G C10252Y C11379T C14036Y C14408T G17110K G18379K A22422R A23403G C23683Y T27953Y C28253T C28706Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551392
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92DD49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T T7061C C9474Y G13503T C14408T A23403G C23664T C24374A T25257C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551393
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91B607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551399
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91012F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T444C C3037T A9634T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551420
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-909420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T444C C3037T A9634T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551421
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92A3FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20931A C21789T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551422
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90F211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10369T C14408T G18674A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551435
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-916AD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551454
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-927FFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551455
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92BBBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551458
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-917A78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C4158T C9811T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551460
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92AF37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4963T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551461
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90F624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10369T C14408T G18674A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551462
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-904BD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551463
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90C79D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6633T G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551465
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9081DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10369T C14408T G18674A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551467
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91629F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T A23403G G25088T G25647T GGG28881AAC A29746C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551468
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90A4E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551474
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-917A5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C4158T C9811T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551475
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90812A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551490
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90CEB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C5835Y A8031G G11083T C14408T A20268G C21614T C21846Y A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551492
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-905442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T444C C3037T A9634T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551501
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92B0E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551514
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-916C46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551533
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90C7AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551536
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92EA50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C843T C3037T C8683T C13335T C14408T C14676T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551551
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90F3B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC T29410C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551554
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9050C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551572
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90A164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8650T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552803
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-928977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552804
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-929026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552807
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92992B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130T C3037T C3170T C6336T C14408T C19961T G20006T A23403G C27673T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552813
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-929D4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552821
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-928E87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552822
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92D532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T G21786T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552832
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90A8AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A489G C3037T T5465C G6387A C12623T C14408T G21624T A23403G G24102A AA25800TT C27903T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552834
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92C2B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G8353A C8950T G10097A C13536T C14408T G19009T A23403G C23731T G27632T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552849
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-929CC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1214A C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552850
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-918EE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552866
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-928AED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552870
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92926C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4803G G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552871
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-929FB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G G25302T C25703T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552882
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92AACD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G G25302T C25703T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552885
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-928DC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552888
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92C560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552890
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-929DF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552895
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-907D09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C3037T C5482T C14408T G17944T C18747T C20320T A22182G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552914
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-903505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C1915T C3037T G6476T C8140T G10097A G11083T T13216G C14408T C18606T A23403G C23731T C25708T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552922
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-928C6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1846G C3037T A9737G G11447A C14408T C17766T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552927
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92B570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4328G A8072G C11919T C14408T T18909C A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552930
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-929220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC C29545T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552941
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92841C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11866T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552954
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92A966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C12756T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552955
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92933C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130T C3037T C3170T C6336T C14408T C19961T G20006T A23403G C27673T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552966
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92B3C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C4002T G10097A G11083T G11634T C13536T C14408T C21691T C22716T A23403G C23731T C27970T GGG28881AAC C28909T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552968
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92B5F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C4002T C7518T G10097A C13536T C14408T A23403G C23731T G26063T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552980
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-928B71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1846G C3037T A9737G G11447A C14408T C17766T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552985
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-929080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130T C3037T C3170T C6336T C14408T C19961T G20006T A23403G C27673T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552989
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92887A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T C20762T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552991
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-929448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3122T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552992
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-926D22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5695G C6628Y T13827C C14408T G18756T A23403G C23683Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552993
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-928FEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130T C3037T C3170T C6336T C14408T C19961T G20006T A23403G T24491Y C27673T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552997
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-938640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C12473T C14408T A19650G G21538A A23403G C26645T GGG28881AAC G29315T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553000
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92D787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8644C C14408T A17943G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553287
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90BBFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T G22487C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553291
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-912F14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G599A A1630C C3037T C14408T C19011T A23403G A26927G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553297
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90CA0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T G2078A C3037T G11851A C14408T C18555T C18698T C18877T A23403G T24596C G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553301
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-907264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4815Y T12145G C14408T C20759T C21676T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553302
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90CAB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T G2078A C3037T G11851A C14408T C18555T C18698T C18877T A23403G T24596C G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553303
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9072FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T9006Y C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553314
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-907343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9207T A9236C C14408T G21046K G21082S A21085M T21087C A21323G A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553326
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91A811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9207T A9236C C14408T G21082S A21085M T21087C A21323G A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553705
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91BACF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9207T A9236C C14408T T21087C A21323G A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553712
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-90E2A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9438T C10808A C14408T A23403G GTT26155- GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555188
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94FB0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5695G T13827C C14408T G18756T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555487
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E6A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G17049T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555934
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6601G G11842A C14408T G15535T C16092T C21721T C21952T C23086T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556407
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8097A C14408T A23403G A26612G C27476T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556489
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6601G G11842A C14408T G15535T C16092T C21721T C21952T C23086T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557137
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90DAA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G24815C C25480T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558407
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5C7E9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6336Y G10265A T13794G C14408T A23403G GGG28881AAC G29134T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558476
 2020-06-22 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D92AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G G26428K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560816 MW049007
 2020-06-22 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T T7237C T8729C C9661T C14408T A23403G G25563T G29777T AGA29863CAG TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_564276
 2020-06-22 2020-09-30
 Australia hCoV-19/Australia/VIC7196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_566055
 2020-06-22 2020-10-01
 United Kingdom hCoV-19/England/202620695/2020
 ATTAAAGGTTT1- C241T C1973T C3037T C3261T C5621T G9479T C14408T A20288C A23403G G28476T GGG28881AAC G29755A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_566078
 2020-06-22 2020-10-01
 Russia hCoV-19/Russia/MOW-RII-MH250S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1780T C3037T C6120T C14408T C21292A C22458T A23403G G25244T C26681T C27434T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_568872
 2020-06-22 2020-10-02
 Kenya hCoV-19/Kenya/C21582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1177C C3037T C8092T C14408T C14676T C19269T C19317T A23403G G25563T G28857A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT810592
 2020-06-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1112-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811500
 2020-06-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1065-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T T6199A G7675T C14408T G17679A G17790T C18457T G19969A A20268G A23403G C28854T A29436T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811501
 2020-06-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1066-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811502
 2020-06-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1067-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T G6422A C10319T C14408T T16926C A18424G A19974G C21304T G22225T A23403G G25563T G25907T C27964T C28472T C28869T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811504
 2020-06-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1070-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C1758T C3037T C5183T C12534T C14408T G16795T A22320G A23403G G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811505
 2020-06-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1072-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C9195T C14408T G16245T G16741A A20268G C21928T A23403G G25726C C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811508
 2020-06-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1076-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811509
 2020-06-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1077-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T C14408T C16260T C16575T C20032T G22484T A23403G G25563T C27371T C28821A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811514
 2020-06-22 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1082-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- T3011C C3037T G5704T C14408T G22205T G22484T A23403G G23611T T27869C T28853G CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT953984
 2020-06-22 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-384a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T AA3829GC T3873A C18877T C21541G C22444T A23403G C23997T T24811A G25563T C26735T T27164G C28854T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

MT953991
 2020-06-22 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-384b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T T14501C T21582C A23403G G23663A T24811A C26735T C26822T T27164G C28854T T29335C TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807-

EPI_ISL_474995
 2020-06-23 2020-06-23
 Israel hCoV-19/Israel/CVL-n-14266/2020
 C241T C1059T C3037T C14408T A23403G G25563T

EPI_ISL_475266
 2020-06-23 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0C30/2020
 C241T A1461G A3003T C3037T C5730T C7231T C14408T G19542T A23403G G24328A GGG28881AAC

EPI_ISL_475304
 2020-06-23 2020-06-23
 United Kingdom hCoV-19/England/PORT-2D0F0A/2020
 A2480G C2558T G11083T C14805T G23593C G26144T

EPI_ISL_483486
 2020-06-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1055-SAN/2020
 ATTAAAGGTT1- G105T C241T C3037T C7600T G13201A C14408T A20268G A23403G C28854T

EPI_ISL_483501
 2020-06-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1074-SAN/2020
 ATTAAAGGTTTA1- C241T C3037T C6633T C14408T C18060A A20268G A23403G T27656C C28854T G29374T

EPI_ISL_483502
 2020-06-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1075-SAN/2020
 ATTAA1- C241T C3037T C3987T G11335T C14408T G15226A G16197T C18877T G21220T A23403G G25049T G25563T C26735T C28961T G29511A

EPI_ISL_483505
 2020-06-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1078-SAN/2020
 ATTAAAGGTTTATACC1- C241T C1059T T1936C C3037T C13487T C14408T C16260T C20389T C21707T A23403G C23557T G25563T G26690T C28821A C29095T

EPI_ISL_483506
 2020-06-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1079-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A187G C241T C3037T C13860T C14408T C16017T A23403G C24718A C25046T T27212C G27561T C27600T C29421T

EPI_ISL_483507
 2020-06-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1080-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T T1936C C3037T C13487T C14408T C16260T C20389T C21707T A23403G C23557T G25563T G26690T C28821A

EPI_ISL_483508
 2020-06-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1081-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3259T C11067T C14408T A20268G C20762T A23403G C23589T G26167C C28854T C29118T C29420T

EPI_ISL_483510
 2020-06-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1083-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2946A C3037T C14408T A20268G A23403G C28332T C28854T

EPI_ISL_483511
 2020-06-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1084-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C15240T C18486T A20268G T22162C A23403G C28854T

EPI_ISL_483512
 2020-06-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1085-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483513
 2020-06-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1086-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A4197G C14408T C15720T C17550T A21583G A23403G A23899C G25563T

EPI_ISL_483536
 2020-06-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1113-SAN/2020
 ATTA1- T13C C241T C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483538
 2020-06-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1115-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483540
 2020-06-23 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1117-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483914
 2020-06-23 2020-07-08
 United Kingdom hCoV-19/England/CAMB-1B51D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5301T C7945T C9430T C14408T A20904G A23403G G26918T C28093T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483915
 2020-06-23 2020-07-08
 United Kingdom hCoV-19/England/CAMB-1B51F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC T29599C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484350
 2020-06-23 2020-07-08
 United Kingdom hCoV-19/England/NOTT-1121CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C C27223T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484376
 2020-06-23 2020-07-08
 United Kingdom hCoV-19/England/NOTT-11237A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16887T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484903 MT750108
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484904 MT750109
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1385T G1738T C3037T G3242A C7318T C11916T C14408T A23403G C24031T G25563T C28087T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484905 MT750110
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484907 MT750112
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/IL-UW-532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484910 MT750115
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C A5553G C7823T C11074T C14408T G21438T A23403G C25710T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484917 MT750122
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/IL-UW-542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C14408T C16175A G21867T A23403G G25563T G26720T C28253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484926 MT750131
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T T4917C C5672T A7837C C10279T C14408T G19677T G20056A A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484927 MT750132
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T C6255T A7837C C10279T C14408T G19677T G20056A A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484949 MT750153
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484950 MT750154
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C10279T C14408T G19677T G20056A A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484954 MT750158
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484959 MT750163
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/NY-UW-584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484985 MT750186
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T T27384C C28892T G29766T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484989 MT750190
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1463A G2305T C3037T G7557A C8818T C14408T C18377T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484991 MT750192
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484996 MT750197
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CGGTTTCGTCCGT197- C241T T2845C C3037T C6500T C14408T A20268G G22014T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484997 MT750198
 2020-06-23 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G16301A T18513C T22054C A23403G T24499C G25563T C27297T C27752T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485401 MT731346
 2020-06-23 2020-07-08
 Bahrain SARS-CoV-2/human/BHR/Wuhan-Hu-1/2020
 T41G C241T C2416T C2937T C3037T G8371T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_485401 MT731346
 2020-06-23 2020-07-08
 Bahrain SARS-CoV-2/human/BHR/Wuhan-Hu-1/2020
 T41G C241T C2416T C2937T C3037T G8371T C14408T A23403G G25563T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_486535 LR860652
 2020-06-23 2020-07-10
 Switzerland hCoV-19/Switzerland/170023_471_F06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C10833T C14408T C15324T A23403G G28747T G28917T G29543T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486538 LR860653
 2020-06-23 2020-07-10
 Switzerland hCoV-19/Switzerland/170026_474_D08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G94T C241T C3020Y C3037T T3725K C5365T C13708A C14408T T20042Y C20233T C22210T A23403G G28003T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486887
 2020-06-23 2020-07-12
 Bahrain hCoV-19/Bahrain/02/2020
 G219T C241T C313T T658C C3037T C5700A G11083T C14408T A23403G G24751T GGG28881AAC G29868T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_486888
 2020-06-23 2020-07-12
 Bahrain hCoV-19/Bahrain/03/2020
 ATTAAAGGTTTAT1- C241T C2416T C2937T C3037T G8371T C14408T A22546G A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_486889
 2020-06-23 2020-07-12
 Bahrain hCoV-19/Bahrain/04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- G188T G210T C241T C313T G662T C3037T C3045T C5700A C9996T C14408T C15235T C19273T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_487297
 2020-06-23 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T12503C C14408T A23403G GGG28881AAC G29179T C29721T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489900
 2020-06-23 2020-07-14
 United States hCoV-19/USA/MN-GMF-07592/2020
 ATTAAAGGTTTA1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G G23441T A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489921
 2020-06-23 2020-07-14
 United States hCoV-19/USA/WI-GMF-07491/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C715T C1059T C1473T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489922
 2020-06-23 2020-07-14
 United States hCoV-19/USA/WI-GMF-07607/2020
 ATTAAAGGTTTATACCTTC1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T C29762T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489923
 2020-06-23 2020-07-14
 United States hCoV-19/USA/WI-GMF-07684/2020
 ATTAAAGGTTTA1- C241T C715T C1059T C1473T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490698
 2020-06-23 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR3902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C12710T T14574C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493002
 2020-06-23 2020-07-20
 United Kingdom hCoV-19/England/20284212204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C228T C241T C2638T C3037T A7705T C9246T C14408T C20660Y A23403G A23416T C24588Y A27938T GGG28881AAC A29430T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_493355
 2020-06-23 2020-07-21
 Norway hCoV-19/Norway/2785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3695T G5206T G8371T G11083T C14408T G15652T A17205G T17907C C22477T A23403G G25563T C28291T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_494005
 2020-06-23 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1664CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C2638T C3037T C5730T C12924T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494013
 2020-06-23 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C2638T C3037T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494027
 2020-06-23 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-16667E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T A20027R A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494038
 2020-06-23 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C2638T C3037T C9442T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494049
 2020-06-23 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-16685A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T G13714A C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494066
 2020-06-23 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1669B1/2020
 AT1- C241T C3037T T3049C C14408T G18907K G21624T A23403G G27877T GGG28881AAC AAAAAAAAA29895-

EPI_ISL_494071
 2020-06-23 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166A36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C2638T C3037T C7239Y C9442T C14408T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494107
 2020-06-23 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166D3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T G23282T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494122
 2020-06-23 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166E67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C2638T C3037T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494127
 2020-06-23 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166EC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C3666T C9442T C14408T G23311S A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494132
 2020-06-23 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166F55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1547R C2638T C3037T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494140
 2020-06-23 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-167006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C14408T C16457Y G22899T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494570
 2020-06-23 2020-07-22
 United States hCoV-19/USA/CA-ALSR-1379/2020
 ATTA1- C241T AAGTCATTT686- C3037T G5164A G10642T C13458T C14408T G21255C A23403G C25614T C27476T GGG28881AAC G28960T G28979A

EPI_ISL_495530
 2020-06-23 2020-07-23
 South Africa hCoV-19/SouthAfrica/KRISP-0405/2020
 ATTA1- G174T C241T C2939A C3037T C9857T C14408T A23403G A23920G A26530G G27561T G29254A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_495534
 2020-06-23 2020-07-23
 South Africa hCoV-19/SouthAfrica/KRISP-0409/2020
 C241T C3037T C4002T G10097A C13536T C14408T C18747T A23403G C23731T GGG28881AAC G29425T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_497333 MT831772
 2020-06-23 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2701/2020
 A1- C241T C3037T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_497338 MT831591
 2020-06-23 2020-07-24
 United States SARS-CoV-2/human/USA/WA-S2706/2020
 AT1- C241T C3037T C10292A C14408T C14768T C15933T G16968T T19839C C22591T A23403G G28193T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_498141
 2020-06-23 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499367
 2020-06-23 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168F17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC AAAAA29899-

EPI_ISL_499376
 2020-06-23 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168FBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C2638T C3037T C14408T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_499390
 2020-06-23 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16909B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC AAA29901-

EPI_ISL_499417
 2020-06-23 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1691C5/2020
 ATTAAAGGTT1- C241T T279Y C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T C15960T T19839C C22858Y A23403G G24586T C25275T G25552T GGG28881AAC T29607C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_499418
 2020-06-23 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1691D4/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A489G A1547W C3037T T5465C G6387A C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC

EPI_ISL_499421
 2020-06-23 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16920E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T G13714A C14408T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_499423
 2020-06-23 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16924A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8944C C14408T C14741T G18181A A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_499424
 2020-06-23 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C14408T A23403G C25624T GGG28881AAC AAAAAAAA29896-

EPI_ISL_499430
 2020-06-23 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16931A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C775T C3037T C9438T C14408T G21160R A23403G GGG28881AAC G29777T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_499435
 2020-06-23 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169383/2020
 ATTAAAGG1- C241T C3037T T8944C C14408T C14741T G18181A A23403G AAAAAAAAA29895-

EPI_ISL_500548
 2020-06-23 2020-07-29
 Singapore hCoV-19/Singapore/727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3951G C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501098
 2020-06-23 2020-07-30
 United States hCoV-19/USA/WA-UW-11399/2020
 ATTAAA1- T10W TCC18GSS AACC34TTTH C241T C313T C3037T A4372G C5700A T8883C TT8885AA C8956T C9693T AGG13512TTA TA14222GC C14225T C14408T C16626T G19947T A23403G C27741T GGG28881AAC C29870A

EPI_ISL_509644
 2020-06-23 2020-08-05
 Spain hCoV-19/Spain/COV005157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A G11083K C13536T C14408T C21952T A23403G C23731T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509645
 2020-06-23 2020-08-05
 Spain hCoV-19/Spain/COV005158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T C7011T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC G29543T G29779T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509646
 2020-06-23 2020-08-05
 Spain hCoV-19/Spain/COV005159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T C7011T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC G29543T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509647
 2020-06-23 2020-08-05
 Spain hCoV-19/Spain/COV005161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_510528 MT789712
 2020-06-23 2020-07-22
 Bahrain SARS-CoV-2/human/BHR/140008296/2020
 ATTAAA1- C884T G1397A C1420T G8653T G11083T C12890T C13721T C17634T A19073G G19735T T25461C C25678T G27915T T28688C C28868T C29077T G29711T G29742T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_512155
 2020-06-23 2020-08-10
 United States hCoV-19/USA/AK-PHL600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2143T C3037T C6336T C14408T A20268G A21794G G21800T A23403G G25244T C29370G CCACGCGGAGTACGATCGAGTGT29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512508
 2020-06-23 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A C14408T C15960T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C

EPI_ISL_512557 MT893669
 2020-06-23 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0751/2020
 ATTA1- C241T C3037T T11675C C14408T T22843C A23403G C25452T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_512558 MT893670
 2020-06-23 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0752/2020
 ATTA1- C241T C1059T C3037T G7936A C10188T C14408T T22220C T22229C A23403G T24982C G25563T T25713C C27964T C29614T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_512560 MT893672
 2020-06-23 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0754/2020
 A1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C20703T A23403G G25563T C28087T G29332T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_512561 MT893673
 2020-06-23 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0755/2020
 ATT1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T C28657T GGG28881AAC C29585T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_512597
 2020-06-23 2020-08-11
 Ukraine hCoV-19/Ukraine/203100317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G8102T C14408T G22021T A23403G G28237T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_512598
 2020-06-23 2020-08-11
 Ukraine hCoV-19/Ukraine/203100318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1489T C3037T G5015A C6701T C9344T T9630C G10157A G11083T C14408T C17639T C19694T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_512599
 2020-06-23 2020-08-11
 Ukraine hCoV-19/Ukraine/203100319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9344T C14408T C17125T A23403G A24005C C29679T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_512600
 2020-06-23 2020-08-11
 Ukraine hCoV-19/Ukraine/203100320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T T2992C C3037T C9344T C12025T C14408T C18657T A23403G C25469T A28715G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_512628
 2020-06-23 2020-08-11
 Ukraine hCoV-19/Ukraine/203100349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T G3091A G6894T C8352T C8890T C9344T C14408T G18079T C18744T A23403G T24022Y T24634C AAAAAAAAAAAAAAAA29888-

EPI_ISL_512874
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1000/2020
 C241T C3037T C14408T C16869T C18877T A23403G G25311A G25563T C26735T

EPI_ISL_512875
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1001/2020
 C241T C14408T C18877T A23403G C26735T

EPI_ISL_512876
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1002/2020
 C241T C3037T T13069C C14408T G22706T G24577A GGG28881AAC

EPI_ISL_512877
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1003/2020
 C241T C3037T C5497T C14408T C14937T C18877T G25563T C26735T

EPI_ISL_512882
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1011/2020
 C241T C3037T C10582T G11521C C14408T T22090C C22444T G25563T C26735T C28854T

EPI_ISL_512883
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1012/2020
 C217T C241T C3037T C4543T C14408T G25563T C25721T C26735T

EPI_ISL_512890
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1020/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_512891
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1021/2020
 C241T C3037T C14408T GGG28881AAC -T29866AAACC

EPI_ISL_512892
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1022/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512893
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1023/2020
 C241T C3037T C14408T GGG28881AAC

EPI_ISL_512894
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1024/2020
 C241T C3037T C14408T GGG28881AAC

EPI_ISL_512895
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1025/2020
 C84T C241T C14408T C18877T G25563T C25721T C26735T T29128C

EPI_ISL_512897
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1027/2020
 C241T C3037T C14408T GGG28881AAC -29867ATCAGAGGCTGCTCGTGT

EPI_ISL_512898
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1028/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_512899
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1030/2020
 C241T C3037T C14408T C20930T A23403G GGG28881AAC C29563T

EPI_ISL_512900
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1031/2020
 C241T C3037T C9924T C10582T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C28915T

EPI_ISL_512901
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1032/2020
 C241T C3037T C14408T G26020T GGG28881AAC

EPI_ISL_512902
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1033/2020
 C241T C1191T C3037T G3563A C8293T C14376T C14408T C18877T T21146G G25563T C26735T

EPI_ISL_512904
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1054/2020
 C241T C3037T C10507T C10834T C14408T A23403G G24577A C24863T GGG28881AAC

EPI_ISL_512906
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1057/2020
 C241T C14408T A23403G GGG28881AAC

EPI_ISL_512907
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH1058/2020
 C241T C1191T C3037T C14408T GGG28881AAC C29585T

EPI_ISL_513071
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH998/2020
 C241T C3037T C14408T T16456C GGG28881AAC

EPI_ISL_513072
 2020-06-23 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH999/2020
 C241T T13069C C14408T A23403G G24577A GGG28881AAC

EPI_ISL_513267
 2020-06-23 2020-08-12
 United States hCoV-19/USA/FL-AB4M/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C673T G1580A C3037T T4125C C14408T A23403G AC26347TT G26350A GCT26352- C26356G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_513268
 2020-06-23 2020-08-12
 United States hCoV-19/USA/FL-ABAN/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C673T G1580A C3037T T4125C C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_514630 MT892977
 2020-06-23 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1758T C3037T C5183T C6701T C12534T C14408T A22320G A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514631 MT892978
 2020-06-23 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10376T T13339C C14408T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_514632 MT892979
 2020-06-23 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10376T T13339C C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514957
 2020-06-23 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2554/2020
 ATTAAAGGTTTATACC1- C241T C829T C1059T C3037T C11916T C14408T C16650T A20675T C22450T A23403G G25563T G29179T G29779T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514959
 2020-06-23 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2556/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_518049
 2020-06-23 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002466/2020
 ATTAAA1- C241T C3037T T7012A C14408T C19402T A23403G G28326T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_521919 MT972174
 2020-06-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521928 MT969390
 2020-06-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521929 MT969391
 2020-06-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521931 MT969393
 2020-06-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521933 MT969395
 2020-06-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6354T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521934 MT969397
 2020-06-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521935 MT969398
 2020-06-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A6721T C14408T A23063T A23403G C26984T C27509T T28196C GGG28881AAC

EPI_ISL_521978 MT972171
 2020-06-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A6721T A10555G C14408T A23063T A23403G C26984T C27509T T28196C GGG28881AAC

EPI_ISL_521985 MT972181
 2020-06-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521991 MT969409
 2020-06-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522016 MT969438
 2020-06-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522029 MT969451
 2020-06-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2308/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522045 MT969467
 2020-06-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522063 MT972193
 2020-06-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T C19716T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_525907
 2020-06-23 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0817/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T G10793T C14408T C18877T A23403G A25076G G25563T G25660C C26192T G27613A

EPI_ISL_525908
 2020-06-23 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13994T C14408T C15933T G16968T T19839C A20055G C21859T A23403G G25691T GGG28881AAC

EPI_ISL_525909
 2020-06-23 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8729A C14408T G20980A A23403G G24751T A29903-

EPI_ISL_526099
 2020-06-23 2020-09-01
 United States hCoV-19/USA/WA-OHSU-0821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A169G C241T C3037T C8818T T11274C C14408T C15952T G20980A A23403G

EPI_ISL_526868
 2020-06-23 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0752/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C9561T C14408T T22213C A23403G G25563T C25658T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_526877
 2020-06-23 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T6294C C8664A G8851A T12383C C14408T A23403G C25350T A25505C C26521T GGG28881AAC G29427T C29870A

EPI_ISL_529105
 2020-06-23 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0699/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T T7153C C14408T C16349T A16373C C21110T A23403G G25563T C27964T C28846T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_529830
 2020-06-23 2020-09-10
 United States hCoV-19/USA/MI-MDHHS-SC21711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C3587T C11916T A12820G A13768G C14408T C15216T A23403G G25563T C29733T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_529936 MT992751
 2020-06-23 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1189/2020
 ATTAAAGGTTTA1- C241T C1059T C1722T C3037T C6525T C14408T T20175C A23403G G25563T C26151T C28311G

EPI_ISL_541741
 2020-06-23 2020-09-23
 India hCoV-19/India/MH-NIV-76773/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A T10009C C12880T C14408T G15708T A23403G C27889T GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541742
 2020-06-23 2020-09-23
 India hCoV-19/India/MH-NIV-77268/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T G3871A C4918T C5700A C6429T C7926T A12393G C14408T C19862T A23403G A28052G GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_544462
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544474
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544480
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11464A C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544481
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1907C C3037T C10015T C14408T G14829T C15654T C23191T A23403G G25563T G26769T C28854T G29235A G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544501
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544520
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T T5406G T8296C C14408T C18877T A23403G G25250A T25520C G25563T G28027T A28293G G28690T G28881T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544527
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25019T G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544533
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1954A C3037T T13797C G14364T C14408T G16336A GA16591TG C18814T AT23403GC A23614G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544543
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544580
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1171C G2282A C3037T T9742C C10626T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544593
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3241T C6990T A7921G C14408T C18877T G20580T T22744C A23403G G25563T C29284T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544620
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A681G C1059T C1684T C3037T G3582A C4540T G9463T C9711T C14408T G19962T G21624C A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544639
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C799T C1059T C3037T C7299T C10319T C14408T C14768T C21682T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544641
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4579A C4582T C10645T C14408T C14585T A23403G G25563T C26977G C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544645
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T C4931A G9479T C14408T A14634G C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544647
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2102T C3037T C6606T C10188T G12332T C14408T A23403G T24982C G25563T C27964T T28981C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544649
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T19284C A23403G C24718A G25838T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544677
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2324A A2969G C3037T C8991T C13274T C14408T C17104T G19816T A23403G G25563T G26389T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544680
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1495T C3037T T7332C T7831A G10265A C14408T G22225T A23403G G23587C G25563T C27498T G28362C G28845T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544682
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544703
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544715
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1150T C3037T C10319T C14408T C17977T A23403G G24812T G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544720
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1907C C3037T C10015T C14408T G14829T C15654T C23191T A23403G G25563T G26769T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544773
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6627T C14408T C19011T C21057T A23403G C25484T C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544795
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544835
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C27964T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544839
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T C8655T T9742C C14408T A14502G C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544884
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544886
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T C1377T C3037T C4927T G8258A C13168T C14408T C16163T A23403G GGG28881AAC G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544889
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C10376T C13487T C14408T C16192T C16260T G19666T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544893
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A18378G T21144C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544899
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544906
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544921
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T G19816T T19839C C21707T A23403G C23557T C25267T C25553T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544935
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11246C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544937
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25019T G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544954
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T G11273T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546073
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-6547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2324A A2969G C3037T C13274T C14408T C17104T G19816T A23403G C25546T G25563T G26389T C27964T G28703C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546081
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-6556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546082
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-6557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1734T C3037T C12855T C14408T G18651T C21036T A23403G C23664T A24367G G25563T G25816A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546083
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-6558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T G7798T C10313T T11134C C14408T G18412T A18535G C19011T T23245G A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546137
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-6639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2228C C3037T C14408T C16163T C20133T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546956
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546974
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14676T C19934T A23403G G25647T T27722C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546988
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1684T C3037T A3580G C14408T C15853T C15952T C16260T C18129T A23403G G25563T C26110T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547004
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A A2568G C3037T C8752T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547040
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-5819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A A2568G C3037T C8752T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547159
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-6003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547215
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-6078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5183T C14408T A23403G G24197T GGG28881AAC G29224T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547280
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-6159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T C11396A C11916T C14178A C14408T C18998T A23403G A23947G G25563T T26187C C26469G G26828T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547283
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-6163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8208T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547342
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-6254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2340T C3037T C6040T C6539T A8887C C14408T C15341T C18086T C19151T T22304C C22987T A23403G G25563T C29732T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547353
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-6268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547354
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-6269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G248T C335T C1059T T2330G C3037T C9120T A12197C C14408T T16425G C22450T A23403G C24130T G25563T T27384C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547399
 2020-06-23 2020-09-24
 United States hCoV-19/USA/TX-HMH-6335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C643T C1059T C3037T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547576
 2020-06-23 2020-09-24
 Brazil hCoV-19/Brazil/SP-358/2020
 ATTAAAGGTTTATACCTTCCCAG1- G24T C241T C3037T T3359C C13608T C14408T T19119C C21707T G21786T A23403G G25088T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_551361
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90EC14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T G13930K C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551364
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-923DBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G G24794K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551377
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-923772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6428T C6681T C7162T C10626T C14408T G15438T C19164T A20268G A23403G C24026T G25401A G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551429
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-923B3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551437
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92542E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551444
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-923E8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A19950G A20047G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551447
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-923FF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551451
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9229AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5653C C14408T A22970G A23403G G25437T G27798T C27945T G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551456
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-923F3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8650T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551459
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91AF94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A23403G C26029A C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551471
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-925FC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551477
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91A1CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551481
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-924EC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3344R C5173T A9433T G10265A C12473T CC14407TT A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551482
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92650C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18169A C21302T CG21304AA A23403G T26436C C26606T C27883T C28290T C29108A G29717A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551494
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-923F4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A19950G A20047G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551495
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FB53E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23099T A23403G G24932T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551518
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-924A2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6145T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551529
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91DA72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4548G C11479T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551542
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-924A1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4803G G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551543
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90E573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1102T C3037T C8290T C14408T A16638G A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551544
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-925DAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551553
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-924CBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551556
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91A18F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551563
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92400D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130T C3037T C3170T C6336T A13182T C14408T C19961T G20006T A23403G C27673T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551565
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-925FD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551570
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-923D16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3486A C3653T C14408T A23403G C24919Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552798
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-913E43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T C14408T G14866A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552801
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-925A2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C12053T C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552812
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92686D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T G10265A C14408T C16887T T19215C A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552817
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9241BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552828
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-925567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C843T C3037T A9433T G10265A C12970T C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552830
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9205A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552831
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920A30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T G6710A C8318A C10615T C14408T G18859T G21624T A23403G G27366T GAT27382SWY GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552839
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91D650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552840
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92065A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552843
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-925813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1971C C3037T G10265A C14408T A23403G G26803T G27364T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552844
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-925840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130T C3037T C3170T C6336T A13182T C14408T C19961T G20006T A23403G C27673T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552845
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-925725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T4519C G4642A G10265A C14408T A14510G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552847
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-926AA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G GGG28881AAC C29203T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552848
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9257F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2570Y C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552853
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920B1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T G6710A C8318A C10615T C14408T G18859T G21624T A23403G G27366T GAT27382SWY GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552856
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-926C07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552857
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920B2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552861
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-923E9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16859T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552862
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9255A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552868
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920A12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552873
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920C85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A C14408T A19167R A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552878
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552883
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920AE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552884
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91FF44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6538T C14408T A20268G T22942C A23403G C28170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552887
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91D22F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9491T C14408T C22624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552891
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9214C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6843T C11345T C14408T G20940T C22208T A23403G C27509T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552892
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92138F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3464T C14408T G20931A C21410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552893
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920AF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335Y C1419Y C3037T C4158Y T5507A C8318M C10615Y G11083K C14408T A20268G C21614Y G21624K A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552894
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91D68D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552908
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91FF62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G11083T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552909
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920DCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T A19167R A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552911
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9150C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15251T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552917
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-926A94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3476A A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552918
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920A5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552923
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920D28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552929
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92677F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T A8450G G9473A G10097A C14408T C14605T G17721T C18032T C21614T TTA21991- A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552931
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920E70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552935
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9256A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552944
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9240D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552946
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920C67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T G6710A C8318A C10615T C14408T G18859T G21624T A23403G G27366T GAT27382SWY GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552971
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6538T C14408T A20268G T22942C A23403G C28170A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552974
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-920C2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T A19167R A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552981
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9241CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A23403G T28494C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552986
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920A6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552998
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92693D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T G10265A C14408T C16887T T19215C A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553001
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-920D19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T G6710A C8318A C10615T C14408T G18859T G21624T A23403G G27366T GAT27382SWY GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553269
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91F919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553271
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91F621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553273
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-922193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T G11083T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553274
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91E65F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1914A C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553277
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91F76A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T C14408T C19011T A23403G A26927G C27679T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553278
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92239D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553280
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91F7C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553281
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9221DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16853T G21255T C21637T A23403G A23933R A28169G GGG28881AAC A29638T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553282
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-922FA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553283
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-921D72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C4002T G10097A G11083T G11634T C13536T C14408T C21691T C22716T A23403G C23731T C27970T GGG28881AAC C28909T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553284
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91C6E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A23403G C26029A C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553286
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-921D09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6723T C8290T C14408T A23403G GTT26155- C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553288
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92248B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553289
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91E7C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T T5507A G11083T A11991G C14408T A20268G G21010A C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553290
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91F278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5695G C10116T T13827C C14408T G18756T A23403G C23855T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553292
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-915139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553298
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-921E33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C4002T G10097A G11083T G11634T C13536T C14408T C21691T C22716T A23403G C23731T C27970T GGG28881AAC C28909T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553300
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91F64F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T G17278T A23403G C26270T C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553305
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91E859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T T5507A G11083T A11991G C12008Y C14408T A20268G G21010A C21614T A23403G C26768T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553307
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-922CFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19402T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553309
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9230A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A22330G A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553310
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91F8EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553311
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91F542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3464T C14408T G20931A C21410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553312
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-921EF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C4002T C7518T G10097A C13536T C14408T A23403G C23731T G26063T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553313
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91E0E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553315
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-922360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063Y C3037T A4801G G7675T T8908C G11801A C14408T A23403G C25603T G28378A GGG28881AAC A29115T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553316
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91F700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C3037T C13665T C14408T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553318
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91E4A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553319
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-921D45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C4002T C7518T G10097A C13536T C14408T A23403G C23731T G26063T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553321
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91C90D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A A8031G G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553325
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91E7D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8290T C9979A C14408T A23403G C26464T C28253Y GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553328
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-92460B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553329
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91F603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3464T C14408T G20931A C21410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553331
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-924692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553333
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9151DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T G18055A A23403G GGG28881AAC G29033S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553334
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-921C93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G G25951T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553335
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90C5EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T62C C241T C1973T C3037T C3261T C5621T G9479T C14408T A20288C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553337
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91CF92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6428T C6681T C7162T C10626T C14408T G15438T C19164T A20268G A23403G C24026T G28690T C28866T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553338
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-924735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553339
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-921E7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7397C C8090T G10905A T11932C C14016T C14408T A21323G A23403G C23895T C24904T C25578T T26318C G28373T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553340
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91F885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553341
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91E82C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C3817T C14408T T21124C A23403G G25429T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553342
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-915184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T G18055A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553343
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-922500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C22550T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553344
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-923095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C3037T C3817T C14408T C14790Y A23403G G25429T C28099T C28253Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553345
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91CF29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4328G A8072G C11919T C14408T T18909C A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553708
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-919F4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A23403G C26029A C26464T GGG28881AAC C29167Y G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555034
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95C51C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T G10265A A11595G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556075
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-95DA67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556090
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-95DAD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T G4642A G10265A C14408T A23403G T26511C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556623
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91D720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A18585R A23403G GGG28881AAC C29203T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556630
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8F2670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11279C T14331C C14408T A15278G A23403G C25350T C26455Y G28487A C29535T G29764T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556992
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E036F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557012
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9149E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T C4084Y G4180T T10453C C11195T C14408T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559112
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FB1B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G G25598T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559128
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-501538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T G1946T C3037T A3569G A6211G A8659G C14408T T18438C C19488T A23403G C26681T C28312T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559134
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5074AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G599A T2153A C3037T C14408T A23403G G26589C A27083G C27128T GGG28881AAC C29520T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559137
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FC786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14120T C14408T A23403G C23731T C28045T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559138
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FF659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T G1946T C3037T A3569G C4633Y A6211G A8659G C14408T T18438C C19488T A23403G C26681T C28312T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559140
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FEEBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1440T C3037T T3100G G10097A G10324A C14408T A20055G G21295T A23403G C23731T G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559144
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FF8CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559146
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F9482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21660T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559160
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FBAAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559177
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-50341B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16092T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559188
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FD776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4328G A8072G C11919T C14408T T18909C A23403G A25243G C25919T C26801T C28651Y GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559191
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FF97E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16092T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559193
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FF8BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16092T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559211
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FC1C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11279C T14331C C14408T A15278G A23403G C25350T G28487A C29535T G29764T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559234
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FF10D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20931A C21789T G22661K A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559255
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F9200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T T16605C C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559276
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FB4F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20931A C21789T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559280
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FE678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T G2585T C2644T C3037T C7732T C10252T C14408T C16175T A23403G G23948T G25687T C26313T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559286
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FC1E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T C20148T G21624T A23403G C26571A G26898K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559292
 2020-06-23 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FBE19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2116W C2706T C3037T T7357C C13517Y C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566056
 2020-06-23 2020-10-01
 United Kingdom hCoV-19/England/202640035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A435G C1437T C3037T C5806T C14408T C16887T C19269T A19727G A23403G GGG28881AAC G29477T G29745T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_568467
 2020-06-23 2020-10-01
 United Kingdom hCoV-19/Scotland/ALDP-9128CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C292T C3037T C9808T C10798A C13862T C14408T C21575T A23403G C28836T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT742782
 2020-06-23 2020-07-12
 Bahrain SARS-CoV-2/human/BHR/Wuhan-Hu-1/2020
 G219T C241T C313T T658C C3037T C5700A G11083T C14408T A23403G G24751T GGG28881AAC G29868T AAAAAAAAAAAAAAAAAA29886-

MT742783
 2020-06-23 2020-07-12
 Bahrain SARS-CoV-2/human/BHR/wuhan-hu-1/2020
 ATTAAAGGTTTAT1- C241T C2416T C2937T C3037T G8371T C14408T A22546G A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

MT742784
 2020-06-23 2020-07-12
 Bahrain SARS-CoV-2/human/BHR/Wuhan-HU-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCAC1- G188T G210T C241T C313T G662T C3037T C3045T C5700A C9996T C14408T C15235T C19273T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT810085
 2020-06-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1379-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- AAGTCATTT686- C3037T G5164A G10642T C13458T C14408T G21255C A23403G C25614T C27476T GGG28881AAC G28960T G28979A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810593
 2020-06-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1113-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810595
 2020-06-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1115-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810597
 2020-06-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1117-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811491
 2020-06-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1055-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C7600T G13201A C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811506
 2020-06-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1074-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C6633T C14408T C18060A A20268G A23403G T27656C C28854T G29374T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811507
 2020-06-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1075-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C3987T G11335T C14408T G15226A G16197T C18877T G21220T A23403G G25049T G25563T C26735T C28961T G29511A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811510
 2020-06-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1078-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1936C C3037T C13487T C14408T C16260T C20389T C21707T A23403G C23557T G25563T G26690T C28821A C29095T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811511
 2020-06-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1079-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C13860T C14408T C16017T A23403G C24718A C25046T T27212C G27561T C27600T C29421T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811512
 2020-06-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1080-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T T1936C C3037T C13487T C14408T C16260T C20389T C21707T A23403G C23557T G25563T G26690T C28821A CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811513
 2020-06-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1081-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T G3259T C11067T C14408T A20268G C20762T A23403G C23589T G26167C C28854T C29118T C29420T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811515
 2020-06-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1083-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- G2946A C3037T C14408T A20268G A23403G C28332T C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811516
 2020-06-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1084-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C3037T C14408T C15240T C18486T A20268G T22162C A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811517
 2020-06-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1085-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT811518
 2020-06-23 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1086-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C1059T C3037T A4197G C14408T C15720T C17550T A21583G A23403G A23899C G25563T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT981487
 2020-06-23 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0699/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T T7153C C14408T C16349T A16373C C21110T A23403G G25563T C27964T C28846T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_475762
 2020-06-24 2020-06-24
 United States hCoV-19/USA/OK_08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17747T A17858G C18060T A27455G T28144C C29149T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483590
 2020-06-24 2020-07-08
 Singapore hCoV-19/Singapore/567/2020
 ATTAA1- A976G C4560T C6310A C6312A G11083T C13730T T17112C C19524T C23185T C23929T G25273T T26780C C28311T AAAAAAAAAAAA29892-

EPI_ISL_483620
 2020-06-24 2020-07-08
 Singapore hCoV-19/Singapore/597/2020
 AT1- C6310A C6312A G11083T C13730T C19524T T22270C C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483692
 2020-06-24 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_217/2020
 G174T C241T A1163T C3037T A8026G C9502T C14408T T16764C A23403G C26533T C28312T C28531T GGG28881AAC G29742T

EPI_ISL_483703
 2020-06-24 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_216/2020
 C241T C683T C2836T C3037T T3836A G4504T C14408T C14708T C18877T C22444T C23114A A23403G G25563T C26735T C28854T

EPI_ISL_483705
 2020-06-24 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_218/2020
 C241T A1163T C3037T G3250T G11330T C14408T A23403G G25534T C25710T GGG28881AAC

EPI_ISL_483707
 2020-06-24 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_219/2020
 C241T A1163T C3037T C14408T G16158T G20164T G22030T A23403G GGG28881AAC

EPI_ISL_483710
 2020-06-24 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_220/2020
 C241T C1060A C3037T C4276T C14408T C18877T C22444T A23403G C23557T G25494T G25563T C26735T G28727T C28854T

EPI_ISL_484892 MT750097
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2232T C2939T C3037T T4946G C7104T C12025T C14408T T19839C A23403G C23707T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484893 MT750098
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484894 MT750099
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G23501T G25563T G28881T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484895 MT750100
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G T27212C C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484896 MT750101
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484897 MT750102
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5310T C12294T C14408T A23403G C25511T G25563T CGGAGT29743- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484898 MT750103
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484899 MT750104
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484900 MT750105
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/IL-UW-525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9120T C14408T A19899T A21464G A23403G G25444A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484901 MT750106
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C20703T A23403G G25563T A27343G C28087T G29332T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484902 MT750107
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484906 MT750111
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/IL-UW-531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484908 MT750113
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484909 MT750114
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1463A G2305T C3037T G7557A C8818T C14408T C18377T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484911 MT750116
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1463A G2305T C3037T G7557A C8818T C14408T C18377T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484916 MT750121
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1463A G2305T C3037T G7557A C8818T C14408T C18377T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484952 MT750156
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1463A G2305T C3037T G7557A C8818T C14408T C18377T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484953 MT750157
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484962 MT750166
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1463A G2305T C3037T G7557A C8818T C14408T C18377T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484993 MT750194
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484994 MT750195
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484998 MT750199
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T G25654T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484999 MT750200
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9120T C14408T A19899T A21464G A23403G G25444A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_485000 MT750201
 2020-06-24 2020-07-08
 United States SARS-CoV-2/human/USA/IL-UW-625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486531 LR860648
 2020-06-24 2020-07-10
 Switzerland hCoV-19/Switzerland/170019_467_F04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5138S T7022Y G10265R G11083K C14408T T17675Y A20742M A23403G G26700K T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486532 LR860649
 2020-06-24 2020-07-10
 Switzerland hCoV-19/Switzerland/170020_468_G02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10265A C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_487274 MT745875
 2020-06-24 2020-07-13
 Bahrain SARS-CoV-2/human/BHR/023232093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- T1927C C3037T C4893T C5700A G6975R G10481A TC10484GA TG10487AT G12163A C14408T C20825T A23403G T26488C GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_489925
 2020-06-24 2020-07-14
 United States hCoV-19/USA/WI-GMF-07816/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C715T C1059T C1473T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_495529
 2020-06-24 2020-07-23
 South Africa hCoV-19/SouthAfrica/KRISP-0404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T T12503C C14408T A23403G C24374A G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_499356
 2020-06-24 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168E47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C14408T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_499450
 2020-06-24 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1694EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C14408T A23403G GGG28881AAC AAAAAAAAA29895-

EPI_ISL_499778
 2020-06-24 2020-07-28
 United Kingdom hCoV-19/England/NORT-2934D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499779
 2020-06-24 2020-07-28
 United Kingdom hCoV-19/England/NORT-29352F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T A25201C C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499786
 2020-06-24 2020-07-28
 United Kingdom hCoV-19/England/NORT-29C2F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C1059T G1599T C3037T C8016T C14408T T18741C A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499976
 2020-06-24 2020-07-28
 United Kingdom hCoV-19/England/LCST-24D725D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500542
 2020-06-24 2020-07-29
 Singapore hCoV-19/Singapore/721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T2992C C6310A C6312A G9500A G11083T C13730T C13740T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500543
 2020-06-24 2020-07-29
 Singapore hCoV-19/Singapore/722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3569G C6310A C6312A A9419G G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500544
 2020-06-24 2020-07-29
 Singapore hCoV-19/Singapore/723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3569G C6310A C6312A A9419G G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500545
 2020-06-24 2020-07-29
 Singapore hCoV-19/Singapore/724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G9500A G11083T C13730T C13740T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500546
 2020-06-24 2020-07-29
 Singapore hCoV-19/Singapore/725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3569G C6310A C6312A A9419G G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500547
 2020-06-24 2020-07-29
 Singapore hCoV-19/Singapore/726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501105
 2020-06-24 2020-07-30
 United States hCoV-19/USA/WA-UW-11918/2020
 ATTAAAGGTTTAT1- CCCAGGTAACAAACCAA19- C36T C241T A1103G C3037T C14408T C15933T G16968T T19839C A20055G C21859T A23403G G25691T GGG28881AAC C29784T T29867A -29904AAAAAAAA

EPI_ISL_501106
 2020-06-24 2020-07-30
 United States hCoV-19/USA/WA-UW-12027/2020
 ATTAAAGGTTTATACCTT1- AAC34TTT C241T C1059T C3037T A4197G C14408T C15720T C17550T A23403G G25563T C29870A

EPI_ISL_509648
 2020-06-24 2020-08-05
 Spain hCoV-19/Spain/COV005163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1601A C3037T C4276T C5784T A7591C T7897C C14408T A20268G C23086T A23403G C23664T C27982T G29734C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_509649
 2020-06-24 2020-08-05
 Spain hCoV-19/Spain/COV005168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509821 MT846505
 2020-06-24 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T C5301T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512612
 2020-06-24 2020-08-11
 Ukraine hCoV-19/Ukraine/203100333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1473T C3037T C9344T C14408T C17639T A23403G C29743T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_512631
 2020-06-24 2020-08-11
 Ukraine hCoV-19/Ukraine/203100352/2020
 ATTAA1- C241T G2654A C3037T A5366G C6354T G9928T C14408T G17302T G18049A A23403G G29764T TTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29822-

EPI_ISL_514620 MT892967
 2020-06-24 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C16260T A23403G G23900C A24253T G25563T C28821A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514635 MT892982
 2020-06-24 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C5388T C14408T C18486T A20268G T22162C A23403G C28854T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_514958
 2020-06-24 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2555/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514960
 2020-06-24 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2557/2020
 ATTAAAGGTTTATACC1- C241T C3037T G13348T C14408T G15372T C18267A A23403G G28857T GGG28881AAC C29137T ACAAAAAAAAAAAAAA29869-

EPI_ISL_514961
 2020-06-24 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2558/2020
 ATTAAAGGTTTATAC1- C241T G1590T C3037T C3817A G7684A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAA29888-

EPI_ISL_514962
 2020-06-24 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2559/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T ACAAAAAAAAAAAAAA29869-

EPI_ISL_514963
 2020-06-24 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_515264 MT897461
 2020-06-24 2020-08-18
 United States SARS-CoV-2/human/USA/MN-MDH-1455/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C16260T A23403G G23900C A24253T G25563T C28821A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515265 MT897462
 2020-06-24 2020-08-18
 United States SARS-CoV-2/human/USA/MN-MDH-1456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C10376T T13339C C14408T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515266 MT897463
 2020-06-24 2020-08-18
 United States SARS-CoV-2/human/USA/MN-MDH-1457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C16260T A23403G G23900C A24253T G25563T C28821A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_515268 MT897465
 2020-06-24 2020-08-18
 United States SARS-CoV-2/human/USA/MN-MDH-1459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C7081T C10376T T13339C C14408T G22898S A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_515837
 2020-06-24 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001352/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C635T C3037T C6312T C11003T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_517624
 2020-06-24 2020-08-24
 Suriname hCoV-19/Suriname/SR-13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15324T C16193T C18060T A19182G G19999T A22404T C22450T A23403G C28253T G28300T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517792 MT966146
 2020-06-24 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0902/2020
 A1- C241T C1059T C3037T C10188T C14408T C17745T T18231C A23403G T24982C G25563T A26231C T27531C C27964T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_517794 MT966148
 2020-06-24 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0904/2020
 ATTAAAGG1- C241T C1812T C3037T G6533T C6558T C14408T C16830T T18012C A23403G A28910T C29025T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_517795 MT966149
 2020-06-24 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C823T C3037T A8565C C14408T A23403G A28847T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_519322 MT972904
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521922 MT972184
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G10540A C14408T A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_521939 MT969399
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521940 MT969400
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21597T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521941 MT969401
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A5353G T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G A28624G GGG28881AAC

EPI_ISL_521942 MT969402
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521943 MT969403
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_521944 MT969404
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T A6721T C14408T A23063T A23403G C26984T C27509T T28196C GGG28881AAC

EPI_ISL_521986 MT972182
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C11455T C14408T C18877T TAT22189- C22444T A23403G G25563T C26735T C28854T G29645T

EPI_ISL_521995 MT969413
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522021 MT969443
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522037 MT969459
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522038 MT969460
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522056 MT972186
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522057 MT972187
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522058 MT972188
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522059 MT972189
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2338/2020
 ATTAAAGGTTTATACCTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522064 MT972194
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522101 MT972231
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2382/2020
 ATTAAAGGTTTATACCTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522120 MT972299
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522121 MT972300
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2410/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522122 MT972301
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2411/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522143 MT972241
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522144 MT972242
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522145 MT972243
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2439/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522153 MT972251
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522241 MT972200
 2020-06-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_523458
 2020-06-24 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G17259T G19480A G21193T A23403G G27827T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523459
 2020-06-24 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523460
 2020-06-24 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7945T G11842A A12759G C14408T G18292T A20268G A23403G C26607T C28854T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523516
 2020-06-24 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20268G C22997T A23403G C24865T G26951T C28849T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523666
 2020-06-24 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523667
 2020-06-24 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523668
 2020-06-24 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T TT7275GG A7750G C14408T G22592T A23403G A24862G A27674T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_523672
 2020-06-24 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T TT7275GG A7750G C14408T A23403G A24862G A27674T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_523674
 2020-06-24 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523675
 2020-06-24 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_523678
 2020-06-24 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525894
 2020-06-24 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1514T C3037T A7068G C8078T G11837T C14408T C14786T A23403G G25563T A28870T

EPI_ISL_525911
 2020-06-24 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8729A C14408T G20980A C22480T A23403G G24751T

EPI_ISL_525912
 2020-06-24 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2668T C3037T G4300T A5041C C10582T G11083T C14408T A23403G G25563T G27463T G28077T

EPI_ISL_526876
 2020-06-24 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T6294C C8664A G8851A T12383C C14408T A23403G C25350T A25505C C26521T GGG28881AAC G29427T G29868A C29870A

EPI_ISL_533260
 2020-06-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5F5616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17126C A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533262
 2020-06-24 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-5F41DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3776G A8072G C14408T C21855T A23403G G25166C C26111T C26195T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533265
 2020-06-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5F4E4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C14408T A23403G C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536522
 2020-06-24 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-124/2020
 ATTAAAG1- C241T C3037T C4002T G10097A G13213A C13536T C14408T C19164T A23403G C23731T C25460T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_539881
 2020-06-24 2020-09-21
 Sweden hCoV-19/Sweden/20-19745/2020
 C203T C241T C1263T C3037T C14408T A23368C A23403G C27920T GGG28881AAC C29546T

EPI_ISL_539883
 2020-06-24 2020-09-21
 Sweden hCoV-19/Sweden/20-52156/2020
 C241T C3037T C10954T C14408T G22299C A23403G C26461T C27920T GGG28881AAC

EPI_ISL_541743
 2020-06-24 2020-09-23
 India hCoV-19/India/MH-NIV-77702/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C4891T C5700A C14408T A23403G C28153T GGG28881AAC G28899C A29491G G29690T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_544454
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G C25460T G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544468
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T C24130T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544469
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T G22309A A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544470
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1836T C3037T A10323G C14408T T15276A T19710C A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544476
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1820A C3037T C14408T G15452T G17151T C21648T A23403G G25563T C26789T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544482
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1238T T1936C C3037T C11416T C13487T C14408T C16260T G16900C T20331C C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544487
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1722T T1907C C3037T C10015T C14408T G14829T C15654T C23191T A23403G G25563T G26769T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544489
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1594T T1936C C3037T C13487T C13862T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544491
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544495
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T19284C A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544497
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5840C C14408T C16260T G17116A A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544507
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T G4720T T9742C C14408T C17639T A23403G C27493T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544511
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16260T T20331C C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544518
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A C15450T A23403G G25563T T27384C G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544519
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2086T C3037T C10319T G11113T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544524
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544613
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2324A A2969G C3037T A8667C C13274T C14408T C17104T G19816T A23403G G25563T G26389T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544651
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C22594A A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544681
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177A C3923T C14408T T21158C C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544690
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C7267T C14408T C14676T G16935T C18247T A23403G T24211C G25647T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544694
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1820A C3037T A3297G G8414A C14408T G15452T G17151T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544697
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544700
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C5173T C8895T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544702
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544706
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544722
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C2340T G2599T C3037T T9742C C14408T C17639T A23403G C24026T G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544724
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10543T C12756T C14408T G14712T C20474T A21137G A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544725
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2801T C3037T C4345T T9208A C10641T C14408T G17658T A23403G G25563T G28085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544730
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544734
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T C9803T T11134C C14408T G14557T A16819G A18535G C19011T A23403G G25819A C26681T T27499C C27972T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544767
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10543T C12756T C14408T C20474T A21137G A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544820
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T G19861T A23403G G25459A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544841
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A681G C1059T C2973T C3037T G3582A C4540T G9463T C9711T C14408T G19962T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544867
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11464A C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544879
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C21646T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544888
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1729T C3037T C13862T C14408T A23403G G25563T C27964T C28344T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544896
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6025C C10319T C14408T A18424G C21304T A23403G G25302T G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544907
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11464A C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544923
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A798G C1057T G2282A C3037T T9742C C14408T C17639T C23380A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545723
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-7939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T C1469T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546071
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C5284T G9190A C14408T C16092T T19479C T19839C G21941T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546072
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546084
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546088
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546090
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T C27389T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546093
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C22388T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546095
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546096
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A742G C3037T C14408T C19011T C21057T C21575T C23086T A23403G C26151T GGG28881AAC G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546097
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C180T C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G A26105G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546098
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6896T C10319T C11967T C14408T C16308T C16694T A23403G T25510C G25563T A25986T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546099
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C7029T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546100
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546101
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T T25689A C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546102
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C G12211A C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546103
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5770T C8140T G10096A C14408T C18377T A21852G A23403G A25158C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546105
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2618G C3037T G10642T G11146T C13774T C14408T C15540T C20474T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546108
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2086T C3037T C10319T G11113T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546109
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546110
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6896T C10319T C14408T C16308T C16694T C20987T A23403G T24141C G25563T A25986T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546111
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546113
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9742C T9959A C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546114
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546116
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T A13712G C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546117
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16741A A20268G T21418C A23403G G28109T T28678C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546119
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C26461T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546121
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T A3184G T9742C C14408T C17639T A21511G A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546123
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C3037T T9107C C14408T G19861T A23403G G25459A G25563T G26263A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546127
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546128
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1836T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546136
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T T11134C C14408T T16548G G18412T A18535G C19011T T23245G A23403G G25819A T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546138
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546139
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546147
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546148
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T C24130T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546178
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10202T G10688T C14408T C23191T A23403G G25563T C26111T G27987T G28085A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546179
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546181
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T G4207T C14408T C14821T C16017T A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546184
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546190
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6304G C14408T A23403G GGG28881AAC T28924C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546194
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2228C C3037T C14408T C16163T C20133T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546211
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T C4931A G9479T C11455T C14408T C17119A C18508T C23191T A23403G G25563T C29409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546219
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546220
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546222
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546225
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18055A G19525T A23403G C28657T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546233
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C28657T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546241
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2644T C3037T C10965T C11020T C14408T C16260T T16695A A23403G G25563T C28821A C29085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546247
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T T14238C C14408T G15202C A23403G G25563T C26456T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546251
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546254
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4890T C5055T C14408T T20769C C22444T G23224T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546255
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A23403G A23947G G25563T T26187C C26469G G26828T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546256
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A C14408T A19433T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546259
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T2998C C3037T C14408T G22021T A23403G G25563T C27964T C28253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546297
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2969G C3020T C3037T G4080A G4913T G8131T C14408T C17104T C21767T A23403G G25563T G26389T A26743G C27964T T27992C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546332
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11464A C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546979
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546990
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5730T G7751T C11339T C14408T C16260T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546992
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547124
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-5960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547321
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3514T G4162T C9163A C9430T C10188T C14408T C16694T A23403G T24982C G25563T G27390C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547375
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547376
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G T29128C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547408
 2020-06-24 2020-09-24
 United States hCoV-19/USA/TX-HMH-6350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551356
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-905970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G G24872T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551367
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-900F55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551368
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FEC72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T G21786T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551369
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-908834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T G22487C A23403G C23731T G26754K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551375
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FC1EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337Y C3037T C14408T A23403G GGG28881AAC C29774T C29784T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551378
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FBE60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551381
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90D6AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3776G A8072G C14408T C21855T A23403G G25166C C25831T C26111T C26195T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551382
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90604D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A6375G A10948G C14408T A23403G G24926T C25665T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551388
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FB2BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C10138T C14408T G20134T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551396
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FD930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1971C C3037T G10265A G11083T C14408T A23403G G25135T G27364T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551401
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FDC64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551407
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FCDEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27641T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551413
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FCD53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T C14408T G14866A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551417
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9055F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G315A C3037T T3154C T4885C G11230T C14408T G21724T C22326T A23403G G23587C G24781A GGG28881AAC G29033T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551418
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FBB69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4911G C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551419
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FBEE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3154C C14408T T15231C A23403G G25687T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551430
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FCF99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3156T C6016T G10097A C14408T G19518T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551433
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FEDAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T C17028T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551446
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-905A6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G A6211G A8659G C10833T C14408T A16474G A18141G C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551464
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-904795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551469
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-900702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G C21145A A23403G G24764A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551476
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FD87F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1971C C3037T G10265A G11083T C14408T A23403G G25135T G27364T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551485
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-904391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27641T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551489
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-900A90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3486A C3653T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551491
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9044BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5650G A8072G C11753T C11919T A14355G C14408T A23403G A25243G C25919T C26801T GGG28881AAC CTG28893AAA G28899A A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551499
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FD8F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T18660C A23403G GGG28881AAC C29774T C29784T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551510
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9060D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312A A6375G A10948G C14408T A23403G G24926T C25665T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551523
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90069C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1528T C3037T C14408T T19893C A23403G GGG28881AAC G29737T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551526
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FD38D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21800T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551528
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FC272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551531
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9002A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3486A C3653T C14408T A23403G G26466A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551535
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90CDD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5695G T13827C C14408T G18756T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551537
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9060F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551539
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9058A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19698T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551547
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90606B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C2710T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551550
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FD8D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14322T C14408T A23403G C25669T GGG28881AAC A29222C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551557
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9087DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G960A C3037T C14408T G18028T G18674A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551560
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-907765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16981G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551562
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90080F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C9962T C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551564
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-909AF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551567
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9018C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551571
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90222D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C G6850T C12651T C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551573
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-905DCF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C12756T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552836
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9031E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1581C C3037T C4931T C14408T T19893C A23403G GGG28881AAC G29628C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552855
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-902A70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4084T G5716A C6568T C6628T C7528T C8139T C9298T A10286G C14408T T17313C C19524T A22116G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552872
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-903875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8644C C14408T A17943G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552889
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-903286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G11083T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552906
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-903356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C751T T1581C C3037T C4931T C14408T T19893C A23403G GGG28881AAC G29628C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552942
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9032A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1528T C3037T C14408T T19893C A23403G GGG28881AAC G29737T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552996
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90320E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1581C C3037T C4931T C5055Y C14408T T19893C A23403G GGG28881AAC G29628C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553308
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9231B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G C23655T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553610
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-95CAD1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3052T C6781A C14408T C16887T G17193T G18674A G19656T A23403G T27384C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553723
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91073C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T G4136T C6395T C11575T A12410G C14408T C17125T A18366G C18788T T19839C C21017T T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555181
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94E708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1102T C3037T C8290T C14408T A16638G A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556580
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8F766C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16374Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556591
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8F79EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC C28171T GGG28881AAC A28995G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556600
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8F6D95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G C23655T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556602
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8F7602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T T5824C C8318A C10615T C14408T G18859T G21624T A23403G C26571A A28482G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556605
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8F6928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G C23655T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556611
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8F7918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26164T C26571A A28482G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556986
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FEFF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556993
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FEF00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T C8208T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T C26942T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556995
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D8379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T T4714C C7101T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556997
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FF163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C8597T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557010
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D4173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G599A T2153A C3037T C14408T A23403G G26589C A27083G C27128T GGG28881AAC C29520T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557013
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D71CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557017
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D9C8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C12473T C14408T C16762T A19650G G21538A A23403G C26645T GGG28881AAC G29315T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557019
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D3244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G599A T2153A C3037T C14408T A23403G G26589C A27083G C27128T GGG28881AAC C29520T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557020
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D5549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557028
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FF87D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557044
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E02DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3622T C8092T C14408T T17353C A23403G C25844T C28087T GGG28881AAC C29160T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557047
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D1774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557050
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90FCE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557054
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DBA9F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7138C C8991T C11289T C14408T T15051C A20255G A23403G G23593S G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557058
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D41CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A A12928G C14408T A19650G C22079A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557061
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-901437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557062
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FEF3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557068
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D7125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G G28423T GGG28881AAC G29557T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557069
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9011E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557070
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D453B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557073
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D634E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C12473T C14408T A19650G G21538A A23403G C26645T GGG28881AAC G29315T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557086
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8CF83A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G T24870G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557102
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FFEF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4803G G10265A T13794G C14408T A23403G GGG28881AAC G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557104
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FF9A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13684T C14408T C17818T C21637T A23403G A28169G GGG28881AAC A29638T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557105
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D64D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557107
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FE067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C23709T C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557108
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D741D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A A12928G C14408T A19650G C22079A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557114
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D728C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G G28423T GGG28881AAC G29557T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557116
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FE1DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T A6097G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557118
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FDEF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C23709T C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557126
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-8D984C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557130
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FFCF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6026T C8016T A8450G G9473A G10097A C14408T C14605T G17721T C18032T C21614T TTA21991- A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557131
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FF8C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G G25302T C25703T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557136
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D1255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1800A C3037T C5000T C14408T A23403G C23854T G25972A G27842T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557144
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D4771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T C5654Y G5716T T10453C C11195T C14408T G14428T A16941R A23403G C25658Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557147
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90DB90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557152
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90FB70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C2706T C3037T C4367A T7357C C7834T C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557154
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9014EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T A3569G C6151T A6211G A8659G T9013A G12514T C14408T C19488T A23403G C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557155
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8CF849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3847A C4002T G10097A C13536T C14408T A23403G C23731T G26063T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557160
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D736B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T G10265A A11595G C14408T A17361R A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557161
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9011F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174T C241T C3037T C3393T G10265A C11931T C12318T C14408T G14580T A23403G TGCACTGACTTGCTTTAGCACTCA27555- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557162
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90DA39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T A2641G C3037T C3622T T13857C C14408T C14676T G21119T A23403G C25844T C28087T G28690T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557164
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8FFDBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C G18907T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559098
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F587B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T T17742C A23403G GGG28881AAC C29203T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559107
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-505482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559108
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FA490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T G4642A G10265A C14408T C18115T A23403G T25711C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559109
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FA4AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T G4642A G10265A C14408T C18115T A23403G T25711C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559110
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F7035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T G11083T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559113
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FEB1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T A9507C T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559115
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F4C25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559127
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F536B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4328G A8072G C11919T C14408T G18859T T18909C A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559135
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F3F2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13684T C14408T C17818T C21637T A23403G A28169G GGG28881AAC A29638T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559148
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F8061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1154G C3037T C14408T C18877T A23403G G25563T G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559156
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F7C9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20931A A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559183
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F4092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1627T C3037T C4320T C11494T C14076T C14408T T18309C G20670A G22335T A23403G G25563T C25688T C29529T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559185
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F8D2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559197
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F4F0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C4002T C7518T G10097A C13536T C14408T A23403G C23731T G26063T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559199
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FFC66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1581C C3037T C4931T C14408T T19893C A23403G GGG28881AAC G29628C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559209
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FA375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6628T G10265A T13794G C14408T A23403G C24916T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559212
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F48F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C843T C3037T A9433T G10265A C12970T C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559216
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F7F0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6628T G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559217
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F6A56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6672G C14408T G18169A A23403G C26606T C27883T C28290T G29717A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559219
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F7105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29774T C29784T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559220
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FA4BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23533Y T24175Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559225
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F43A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7878C G10097A C14408T T16348C C21575T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559237
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F5CF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G A23403G G27841T GGG28881AAC C29545T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559239
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F7CAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4328G A8072G C11919T C14408T T18909C A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559248
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F551A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559258
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F50DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559260
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F8C6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T G6710A C8318A C10615T C14408T G18859T G21624T A23403G G27366T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559270
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-4F500A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T G11083T C14408T A23403G GGG28881AAC G29825A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559271
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F8F55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T G6710A C8318A C10615T C14408T G18859T G21624T A23403G G27366T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559279
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F7D89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C539T G599A A871G C3037T C3140T C14408T C14697T G20931A G23120T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559285
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F909D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4076A G6653T C14408T C18877T T22165C A23403G C24771T GAA25437- G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559288
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F40DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559289
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F5B45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C C22550Y A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559291
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F7EE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4328G A8072G G11083T C11919T C14408T T18909C A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559298
 2020-06-24 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F7044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A3569G G3849T A6211G A8659G C13665T C14408T G17122T C19317T C19488T A23403G A24519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566057
 2020-06-24 2020-10-01
 United Kingdom hCoV-19/England/202660056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT731666
 2020-06-24 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_216/2020
 C241T C683T C2836T C3037T T3836A G4504T C14408T C14708T C18877T C22444T C23114A A23403G G25563T C26735T C28854T

MT731667
 2020-06-24 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_218/2020
 C241T A1163T C3037T G3250T G11330T C14408T A23403G G25534T C25710T GGG28881AAC

MT731668
 2020-06-24 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_219/2020
 C241T A1163T C3037T C14408T G16158T G20164T G22030T A23403G GGG28881AAC

MT731669
 2020-06-24 2020-07-08
 Bangladesh SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_220/2020
 C241T C1060A C3037T C4276T C14408T C18877T C22444T A23403G C23557T G25494T G25563T C26735T G28727T C28854T

MT731744
 2020-06-24 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_217/2020
 G174T C241T A1163T C3037T A8026G C9502T C14408T T16764C A23403G C26533T C28312T C28531T GGG28881AAC G29742T

MW030279
 2020-06-24 2020-09-22
 Peru SARS-CoV-2/human/PER/covper048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C2388T C3037T C5907T C14408T C15277T A21917G A23403G C25872T C26456T A26530G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_483531
 2020-06-25 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1107-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2143T A2596G C3037T C7768T C11575T C14408T A20268G C21859T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_483532
 2020-06-25 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1108-SAN/2020
 ATTAAAGGTTTATAC1- C241T C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_483537
 2020-06-25 2020-07-07
 United States hCoV-19/USA/CA-ALSR-1114-SAN/2020
 ATTAAAG1- C241T C2143T A2596G C3037T C7768T C11575T C14408T A20268G C21859T A23403G C28854T

EPI_ISL_484220
 2020-06-25 2020-07-08
 United Kingdom hCoV-19/England/HECH-259A48C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10202T C14408T G21255T A23403G C23731T C27538A G28580T G28803A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484931 MT750135
 2020-06-25 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484932 MT750136
 2020-06-25 2020-07-08
 United States SARS-CoV-2/human/USA/NJ-UW-557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T G25654T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484935 MT750139
 2020-06-25 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T A16387T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484938 MT750142
 2020-06-25 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484940 MT750144
 2020-06-25 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484944 MT750148
 2020-06-25 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1463A G2305T C3037T G7557A C8818T C14408T C18377T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484945 MT750149
 2020-06-25 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T G25654T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484970 MT750173
 2020-06-25 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484971 MT750174
 2020-06-25 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9721C C12025T C14408T T19839C C19955T A23403G C23707T G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484975 MT750178
 2020-06-25 2020-07-08
 United States SARS-CoV-2/human/USA/IL-UW-600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T G18985T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484976 MT750179
 2020-06-25 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2549A C3037T C9448T C10815T C14408T C14599T G15732T T19143C C19806T A20268G A23403G C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484978 MT750180
 2020-06-25 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484979 MT750181
 2020-06-25 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T G25654T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484980
 2020-06-25 2020-07-08
 United States hCoV-19/USA/WI-UW-605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6627T -10387T C11379T C12921T C14408T T15354C C18877T A21852C A23403G G25563T C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486524 LR860635
 2020-06-25 2020-07-10
 Switzerland hCoV-19/Switzerland/170010_461_F02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6633T C10833T G13459T C14408T C15324T C15600T A21137R T23062C A23403G C27804Y G28747T G28917T G29543T G29745T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486525 LR860637
 2020-06-25 2020-07-10
 Switzerland hCoV-19/Switzerland/170011_462_E01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G3638R T3727Y A3735R C3743Y G3770S A5563R A6875W G6877K G10265A C14408T C15720T A15972G A16210W C19718T T20454Y A23403G G23405C G24098T G26700T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486526 LR860640
 2020-06-25 2020-07-10
 Switzerland hCoV-19/Switzerland/170013_463_E08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5194T C6026T C11095T C14408T T14958C C15324T C15857T C18747T C22642Y A23403G T27264K T29834C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486527 LR860645
 2020-06-25 2020-07-10
 Switzerland hCoV-19/Switzerland/170014_464_E10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G5950K G10097R C10207Y A10211R T10307Y C13536T C14408T T17675Y G19732T A23403G C23731T C24082Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486530 LR860647
 2020-06-25 2020-07-10
 Switzerland hCoV-19/Switzerland/170018_466_G09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G1590R C3037T T7035W C12789Y C14408T C19524T G22205C A23403G C25731T GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_487273 MT745836
 2020-06-25 2020-07-13
 Bahrain SARS-CoV-2/human/BHR/110003611/2020
 ATT1- C241T C2416T C2937T C3037T G8371T C14408T A23403G G25563T T29859A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_487288
 2020-06-25 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0300/2020
 ATTAAAGGTTTATACCT1- G174T C241T C3037T C9857T C14408T A23403G A23920G A26530G G27561T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_487316
 2020-06-25 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A929G C3037T C5974T C14408T A23403G C23520T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_487320
 2020-06-25 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0369/2020
 ATTA1- C241T C3037T C5144T C5974T C14408T A23403G C23520T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_487321
 2020-06-25 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0370/2020
 AT1- G174T C241T C3037T C9857T C14408T A23403G A23920G A26530G G27561T G28899T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_491322 MT772403
 2020-06-25 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T G18985T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491365 MT772461
 2020-06-25 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491366 MT772462
 2020-06-25 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T C6651T C12053T C14408T T16425G C17639T C22388T A23403G A23669G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492076
 2020-06-25 2020-07-19
 North Macedonia hCoV-19/North Macedonia/ChVir7904/2020
 ATTAAAGGTTTATA1- C241T C1342T C3037T C7765T C9891T C14408T C17690T C18570T C18877T A23403G G25563T C26060A T27591G T28098C G28851C G29081T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_492082
 2020-06-25 2020-07-19
 North Macedonia hCoV-19/North Macedonia/ChVir7912/2020
 ATTAAAGGTTTAT1- C241T C313T G1181T C3037T G3971T C14408T A23403G T27582A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_492083
 2020-06-25 2020-07-19
 North Macedonia hCoV-19/North Macedonia/ChVir7913/2020
 ATTAAAGGTTTATA1- C241T C313T G1181T C3037T C14408T A23403G T27582A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_492084
 2020-06-25 2020-07-19
 North Macedonia hCoV-19/North Macedonia/ChVir7914/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C313T C3037T A10317G C14408T A23403G C25731T GGG28881AAC G29701T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_492085
 2020-06-25 2020-07-19
 North Macedonia hCoV-19/North Macedonia/ChVir7915/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C313T C2189T C3037T G5017A C14408T A23403G C28253T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_492086
 2020-06-25 2020-07-19
 North Macedonia hCoV-19/North Macedonia/ChVir7918/2020
 ATTAAAGGTTTATACC1- C241T G530A C3037T C3130T C5784T C12754T C14408T G19962T A23403G C28153T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_493360
 2020-06-25 2020-07-21
 Norway hCoV-19/Norway/2794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6402T C14408T A16734G A20268G T22207C A23403G G24794T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493362
 2020-06-25 2020-07-21
 Norway hCoV-19/Norway/2796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5273A C14408T A23403G G24368T G25074T G25563T G28212T G28798T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493974
 2020-06-25 2020-07-21
 United Kingdom hCoV-19/Scotland/EDB6718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6472T C7815T C14408T A20268G G22363T A23403G T26972C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499368
 2020-06-25 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168F26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C2638T C3037T C9442T C14408T G23282T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_499380
 2020-06-25 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168FF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C10332T C14408T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_499395
 2020-06-25 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T T8944C C14408T C14741T G18181A A23403G AAAAA29899-

EPI_ISL_499415
 2020-06-25 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16914D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C2638T C3037T C9442T C14408T A23403G GGG28881AAC AAAAA29899-

EPI_ISL_499419
 2020-06-25 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1691E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T C21789T A23403G GGG28881AAC

EPI_ISL_499420
 2020-06-25 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1691F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T G19518K A23403G GGG28881AAC AAAAAAAA29896-

EPI_ISL_499425
 2020-06-25 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC AAAAAA29898-

EPI_ISL_499437
 2020-06-25 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1693B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_499438
 2020-06-25 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1693DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T A1547W C2638T C3037T C9442T C14408T G23282T A23403G GGG28881AAC AAAAA29899-

EPI_ISL_499446
 2020-06-25 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16949F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T C9442T C14408T G23282T A23403G GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_499449
 2020-06-25 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1694CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C2638T C3037T C9442T C14408T G23282T A23403G GGG28881AAC

EPI_ISL_499459
 2020-06-25 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1695AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T A1547W C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T AAAAAAAA29896-

EPI_ISL_499977
 2020-06-25 2020-07-28
 United Kingdom hCoV-19/England/LCST-24D727B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T T16056C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499978
 2020-06-25 2020-07-28
 United Kingdom hCoV-19/England/LCST-24D72B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G410T C3037T G10265A C14408T C16887T A23207G A23403G G24872T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501103
 2020-06-25 2020-07-30
 United States hCoV-19/USA/WA-UW-11829/2020
 ATTAAAGGTTTATAC1- AAC34TTT C241T C3037T T8883C TT8885AA AGG13512TTA TA14222GC C14225T C14408T T19839C C20148T A23403G GGG28881AAC C29784T G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501104
 2020-06-25 2020-07-30
 United States hCoV-19/USA/WA-UW-11832/2020
 ATTAAAGGTTTATACC1- AAC34TTT C241T C3037T C4777T T8883C TT8885AA C9559T G13514A TA14222GC C14408T A20268G C23248T A23403G C28854T C28887T

EPI_ISL_501107
 2020-06-25 2020-07-30
 United States hCoV-19/USA/WA-UW-12149/2020
 ATTAAAGGTTTATA1- TCCC18GGSM AAC34TTT C241T C3037T T8883C TT8885AA AGG13512TTA TA14222GC C14225T C14408T C15933T G16968T T19839C A23403G T25852C G26428T GGG28881AAC C29784T C29870A

EPI_ISL_511955
 2020-06-25 2020-08-10
 United Kingdom hCoV-19/England/BRIS-13308B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G319A C5310T G6337T G11083T C12455T C12924T C14805T T18632G C21727T G25361A G26144T C26625T T26715K G26720R G27896T C28399T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512060 MT940452
 2020-06-25 2020-08-10
 India SARS-CoV-2/human/IND/GBRC326/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A1585T C2836T C3037T G3053T C14408T C17502T C18877T A20294G G21724T G22180A C22444T A23403G G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_512063
 2020-06-25 2020-08-10
 India hCoV-19/India/GBRC328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C2836T C3037T C3817T T3833G C3876T A6520G C8772T T11642C C14408T T14499G C18877T C22444T G22592A A23403G T24811A G25563T C26735T G28083T C28854T ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_512064 MT940458
 2020-06-25 2020-08-10
 India SARS-CoV-2/human/IND/GBRC329/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A1585T C2836T C3037T C14408T C18877T A19416G G21724T C22444T A23403G G25563T C26735T C28854T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_512065 MT940459
 2020-06-25 2020-08-10
 India SARS-CoV-2/human/IND/GBRC330/2020
 ATTAAAG1- C241T C2836T C3037T C3817T C14408T C18877T C22444T A23403G G25563T C26028T C26735T C27752T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_512156
 2020-06-25 2020-08-10
 United States hCoV-19/USA/AK-PHL621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T409C C3037T C14408T G14500T A20288G C21622T C21721T A23403G C26894T C28638A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512157
 2020-06-25 2020-08-10
 United States hCoV-19/USA/AK-PHL622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4180T C6781T C9430T C11916T C14408T C14724T C16329T C19185T A23403G C25584T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512256
 2020-06-25 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_512257
 2020-06-25 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_512266
 2020-06-25 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1963/2020
 ATTAA1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_514601 MT950189
 2020-06-25 2020-08-17
 India SARS-CoV-2/human/IND/GBRC354a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1876C C3037T C3737T G4866T A6748G G13958A C14408T C14425A T21890C A23403G C26735T TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807-

EPI_ISL_514602
 2020-06-25 2020-08-17
 India hCoV-19/India/GBRC354b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2836T G2944A C3037T C3737T C14408T C18877T T21890C A23403G G28083T TGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29807-

EPI_ISL_514603 MT950191
 2020-06-25 2020-08-17
 India SARS-CoV-2/human/IND/GBRC355a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T C14408T G17334T C18877T C22444T A23403G G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514604 MT950190
 2020-06-25 2020-08-17
 India SARS-CoV-2/human/IND/GBRC355b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T A12529G C14408T G17334T C18877T C22444T A23403G G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514605 MT950193
 2020-06-25 2020-08-17
 India SARS-CoV-2/human/IND/GBRC356/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T C14408T C18877T T20994A C22444T A23403G G23663A C23997T G25563T C26735T T27164G C28854T T29335C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514606 MT950192
 2020-06-25 2020-08-17
 India SARS-CoV-2/human/IND/GBRC357a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G127T C241T C1441T C2836T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514607
 2020-06-25 2020-08-17
 India hCoV-19/India/GBRC357b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2836T C3037T C14408T C18877T G19872T G21724T C22444T A23403G G25563T C26735T G28083T C28854T T29335C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514609 MT950195
 2020-06-25 2020-08-17
 India SARS-CoV-2/human/IND/GBRC359/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A1585T C2836T C3037T G3053T C14408T C17502T C18877T A20294G G21724T G22180A C22444T A23403G G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514623 MT892970
 2020-06-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C16260T T16993C G22316A A23403G G23900C A24253T G25563T C28821A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_514624 MT892971
 2020-06-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T G26713C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514633 MT892980
 2020-06-25 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C16260T A17553C A23403G G23900C A24253T G25563T C28821A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514964
 2020-06-25 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2561/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16457T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_514965
 2020-06-25 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2562/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16457T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514966
 2020-06-25 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2563/2020
 ATTAAAGGTTTATACC1- C241T C829T C1059T C3037T C11916T C14408T C16650T A20675T C22450T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514967
 2020-06-25 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2564/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16457T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_514969
 2020-06-25 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2566/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514970
 2020-06-25 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2567/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514971
 2020-06-25 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2568/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514972
 2020-06-25 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2569/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16457T C16650T A20675T A23403G G25563T G29179T G29779T ACAAAAAAAAAAAAAA29869-

EPI_ISL_514973
 2020-06-25 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2570/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_514974
 2020-06-25 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2571/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T T21934A A22766G A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_515928
 2020-06-25 2020-08-20
 United States hCoV-19/USA/CA-CDPH037/2020
 ATTA1- C241T C3037T G4211T C14408T C19875Y A20268G C20759T A23403G T24076C A24287G C28725A C28854T

EPI_ISL_516426
 2020-06-25 2020-08-20
 North Macedonia hCoV-19/North Macedonia/5016/2020
 ATTAAA1- C241T G530A C3037T C3130T C5784T C12754T C14408T G19962T A23403G C28153T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_516919
 2020-06-25 2020-08-24
 Israel hCoV-19/Israel/CVL5786/2020
 AT1- C241T C683T C1059T C3037T T4030A A4044G C6402T T10249C G11083T A12969G C14408T G17427T G21193T A23403G G25563T C28320T C28854T C28876T

EPI_ISL_517625
 2020-06-25 2020-08-24
 Suriname hCoV-19/Suriname/SR-14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C15324T C16193T C18060T A22404T C22450T A23403G C28253T C28335T C28751A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517626
 2020-06-25 2020-08-24
 Suriname hCoV-19/Suriname/SR-15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C15324T C16193T C18060T A22404T C22450T A23403G C28253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517627
 2020-06-25 2020-08-24
 Suriname hCoV-19/Suriname/SR-16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C398T G704A T1813A T3034A C3037T C14408T C14676T C15324T C16193T C18131T A22404T A23403G C25549T C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517628
 2020-06-25 2020-08-24
 Suriname hCoV-19/Suriname/SR-17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C398T G704A T1813A T2953C T3034A C3037T C14408T C15324T C16193T C18131T A22404T A23403G C25549T C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517629
 2020-06-25 2020-08-24
 Suriname hCoV-19/Suriname/SR-18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C398T G704A T1813A T2953C T3034A C3037T C14408T C15324T C16193T C18131T A22404T A23403G C25549T C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517630
 2020-06-25 2020-08-24
 Suriname hCoV-19/Suriname/SR-19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C398T G704A T1813A T3034A C3037T C14408T C15324T C16193T C18131T A22404T A23403G C25549T C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517631
 2020-06-25 2020-08-24
 Suriname hCoV-19/Suriname/SR-20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C398T G704A T1813A T3034A C3037T C14408T C15324T C16193T C18131T A22404T A23403G C25549T C25904T G27271T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517633
 2020-06-25 2020-08-24
 Suriname hCoV-19/Suriname/SR-22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C398T G704A T1813A C2462T C3037T C14408T C15324T C16193T C18131T A22404T A23403G C25549T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517638
 2020-06-25 2020-08-24
 Suriname hCoV-19/Suriname/SR-27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C398T G704A T1813A C3037T C14408T C15324T C16193T C18131T A22404T A23403G C25549T C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517639
 2020-06-25 2020-08-24
 Suriname hCoV-19/Suriname/SR-28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C398T G704A T1813A C3037T C14408T C15324T C16193T C18131T A22404T A23403G C25549T C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517640
 2020-06-25 2020-08-24
 Suriname hCoV-19/Suriname/SR-29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C398T G704A T1813A C3037T C14408T C15324T C16193T C18131T A22404T A23403G C25549T C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517641
 2020-06-25 2020-08-24
 Suriname hCoV-19/Suriname/SR-30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C398T G704A T1813A C3037T C14408T C15324T C16193T C18131T A22404T A23403G C25549T C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517644
 2020-06-25 2020-08-24
 Suriname hCoV-19/Suriname/SR-33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C398T G704A T1813A T3034A C3037T C14408T C15324T C16193T C18131T A22404T A23403G C25324T C25549T C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517645
 2020-06-25 2020-08-24
 Suriname hCoV-19/Suriname/SR-34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C398T G704A T1813A T3034A C3037T G5180A C14408T C15324T C16193T C18131T A22404T A23403G C25549T C25904T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518048
 2020-06-25 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002465/2020
 AT1- C241T C722A C3037T A7064G C14408T C22675T C23191T A23403G C27612T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_521945 MT972142
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521946 MT972143
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521947 MT972144
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521948 MT972145
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521950 MT972147
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521951 MT972148
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2211/2020
 ATTAAAGGTTTATAC1- C241T A1163T C3037T C3990T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521952 MT972149
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521996 MT969414
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522017 MT969439
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522025 MT969447
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2304/2020
 A1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522036 MT969458
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G6254T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522042 MT969464
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522043 MT969465
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T T1285A C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522046 MT969468
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7600T G7798T C14408T C14599T A23403G T23548C GGG28881AAC

EPI_ISL_522047 MT969469
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522048 MT969470
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T C14599T A23403G T23548C GGG28881AAC

EPI_ISL_522051 MT969473
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522053 MT969475
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522061 MT972191
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522062 MT972192
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522065 MT972195
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2344/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522067 MT972197
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_522068 MT972198
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C17747T C18555T C19217T C22413T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522069 MT972199
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2349/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522084 MT972216
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2364/2020
 ATTAA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522091 MT972223
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A5353G T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G A28624G GGG28881AAC

EPI_ISL_522102 MT972232
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2384/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522103 MT972233
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4893T C5869T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522146 MT972244
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2440/2020
 ATTAAAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522149 MT972247
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522152 MT972250
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522162 MT972259
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2456/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522165 MT972263
 2020-06-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_523662
 2020-06-25 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1288T T2537G C3037T G8858A G12191T C13647T C14408T T16479C A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523734
 2020-06-25 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C17977T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525421
 2020-06-25 2020-08-29
 India hCoV-19/India/GJ-GBRC-397a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_525422
 2020-06-25 2020-08-29
 India hCoV-19/India/GJ-GBRC-397b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C14408T C18877T C22444T A23403G G25563T C26735T G28083T C28854T G29179T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_525702
 2020-06-25 2020-09-01
 United States hCoV-19/USA/WA-S2712/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C5392T A11246T C14408T C18877T A23403G A23949G G25563T C29013T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_525969
 2020-06-25 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1603G C3037T C11916T C14362T C14408T A20935G A23403G C25466T G25563T G28001A G28027T G29742T

EPI_ISL_526869
 2020-06-25 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T T22213C A23403G G25563T C25658T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_526893
 2020-06-25 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0779/2020
 ATTAAA1- C241T C1059T C3037T C14408T A18280G A23403G G25563T C25658T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_526894
 2020-06-25 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0780/2020
 AT1- C241T C1059T C3037T C14408T A18280G A23403G G25563T C25658T

EPI_ISL_529596
 2020-06-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-6189C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7360A C14408T T19839C T21854C A23403G A24730T A25741G C26681T T27285C G28086T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533231
 2020-06-25 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-5F6466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20031T A23403G T26076A C27434T GGG28881AAC G29262T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533252
 2020-06-25 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-5F8CB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3776G T8023C A8072G C14408T C21855T A23403G G25166C C26111T C26195T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533271
 2020-06-25 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-5F6624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T C1101T G2381T C3037T T4579A C7011T C14408T A23403G A25798G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541747
 2020-06-25 2020-09-23
 India hCoV-19/India/MH-NIV-81270/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C5700A C13554T C14408T G21786T A23403G T23803A G28350T GGG28881AAC G29000T T29512C GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_542023
 2020-06-25 2020-09-23
 United States hCoV-19/USA/NMDOH-2020153389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C335T C1059T C3037T T5290C C5884T C14408T T16425G C17639T A23403G G25563T C26455T C29870A

EPI_ISL_544574
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T T12673C C14408T A16978G G20578T C23170A A23403G C25046T G25563T G25855T T26816C C27945T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544659
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544673
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22747T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544675
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C527T C1059T C3037T C5031T C8357T C14408T T16425G A23403G A25104G G25563T G28908T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544676
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C15495T C16192T C16260T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544683
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T G7553T T9742C C14408T C17639T A23403G C24026T C26521T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544695
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T C8092T T11134C C14408T C19011T A23403G G25819A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544708
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C22594A A23403G G25563T G25907T C27434T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544711
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A23403G A23947G G25563T T26187C C26469G G26828T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544714
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G C24138T C29311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544723
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1907C C3037T C10015T C14408T G14829T C15654T C23191T A23403G G25563T G26769T C28854T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544726
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1495T C3037T T7332C T7831A C14408T C22227T A23403G G25563T C27498T G28362C G28845T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544733
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T G1463A C3037T A3337C C14408T T16425G C17639T A23403G G25563T C26455T C27600T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544737
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T G13966A C14408T G15202C C22388T A23403G G25563T C27964T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544742
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544748
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T C9521A C14408T A20268G A23403G C24904T C28854T G29081T G29422T A29567G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544756
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544762
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C7834T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A23403G G25563T G26828T A29083G G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544768
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T T12827C C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544775
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T C26464T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544784
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T C1059T C3037T G6421T A10323G C14408T T15276A T20421C A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544799
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544815
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C14408T A16719G G17278T C17573T A19686G A23403G G25563T C27964T C28344T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544830
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C G12211A C14408T C17639T T20508C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544838
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1343G C3037T G3431T C7299T C10319T C14408T C14768T C21682T A23403G G25563T G25593C C26060T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544852
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5822A C14408T C19011T C21057T A23403G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544853
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T G3433A C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C27679T C27972T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544876
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6304G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544910
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C763T C1059T C3037T T5840C C11956T C14408T C16260T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545698
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C4931A G7675T G9479T C14408T C17119A C18508T C23191T A23403G G25563T G28851A C29409T G29744T C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545995
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2324A A2969G C3037T C13274T C14408T C17104T G19816T A23403G C25546T G25563T G26389T C27964T G28703C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546146
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T C17745T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546183
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546193
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25019T G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546196
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T G2282A A2568G C3037T T9742C C11572T C14408T C17639T A18366G A22519G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546197
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A23403G A23947G G25563T T26187C C26469G G26828T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546200
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1238T T1936C C3037T C13487T C14408T C16260T T20331C C21707T A23403G C23557T G25563T G26690T G27214T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546201
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546207
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A3933G C14408T C14676T G21624C A23403G G25647T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546208
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T G3433A C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C27679T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546209
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10626T C14408T C17639T A23403G T25628C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546213
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546216
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17010T T17607C C17649T C19011T C21057T A23403G C26151T T26442C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546217
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T G1323T C3037T C7749T C7834T C8140T G11083T C12876T C14408T C21365T G22017T A23403G T25400C G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546218
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A742G C3037T C12073T C14408T C19011T C21057T C21575T C23086T A23403G C26151T GGG28881AAC G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546221
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G C24865T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546227
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546232
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2324A A2969G C3037T C13274T C14408T C17104T G19816T A23403G C25546T G25563T G26389T C27964T G28703C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546234
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A G20578T A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546235
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T C5392T T9742C C14408T C17639T A19902G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546236
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A4870G C12754T C14408T A18082G A23403G C23410T G25563T C27964T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546240
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G T29128C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546243
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T T25689A C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546244
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5840C C14408T C16260T G17116A A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546245
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C157T C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546248
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C1059T C3037T C3784T A10323G C10449T C14408T A23403G G25563T C26395T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546252
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11653T C14408T T14565A C23191T A23403G C23422T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546253
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1734T C3037T G10396T C14408T A18702C A23403G C23664T G25563T T25651C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546257
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4090T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546258
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1820A C3037T A3297G C14408T G15452T G17151T A23403G G25563T T26597C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546262
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546264
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C173T C241T A538G C1059T G2249A C3037T T9107C C14408T G19861T A23403G G25459A G25563T T27722C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546272
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2695T C3037T C10319T C14408T A23403G G23868T G25563T C27964T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546290
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T C14408T C23202T A23403G C25294T G25563T C26625T C27964T C28432T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546294
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18568T C20474T G21220T A23403G A28296T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546296
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12067T C14408T C23185T A23403G G28179C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546300
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2324A A2969G C3037T C13274T C14408T C17104T G19816T A23403G G25563T G26389T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546302
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546308
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T C24130T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546310
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C14408T G16912T C17766T A18751G A23403G G25563T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546311
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C2044T C3037T C3737T C10626T C14408T C15720T A23403G GGG28881AAC G28985A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546312
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12756T C14408T C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546313
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C355T C1059T C3037T A10323G G12793T C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546314
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1592C G2398A C2416T C3037T C14408T C23185T A23403G T25392C G25429T A25470G G25552T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546316
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10191T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546319
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C26947T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546320
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1549T C3037T C10319T C14408T A18424G C21304T A23403G G25009A G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546322
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6421T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546326
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G248T C335T C1059T C3037T C9120T A12197C C14408T C15720T T16425G G17019T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546328
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1890A C3037T C14408T C18804T C20474T A23403G C25708T G27074T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546333
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1907C C3037T C10015T C14408T G14829T C15654T C23191T A23403G G25563T G26769T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546336
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6896T C10319T C14408T C16308T C16694T A23403G G25563T A25986T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546337
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546363
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T C22624T A23403G C23557T C25267T G25563T G26690T C27630T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546808
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C21930T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546811
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C10748T C13274T C14408T G20578T A23403G G25563T G25855T C27945T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546815
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T G16935T A23403G G25563T G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546816
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546819
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T582C C1059T C3037T C10319T C12374T C14408T C15763T C20031T A23403G G25563T C27964T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546825
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546827
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546829
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A16140G A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546831
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546833
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2618G C3037T T4858C C11747T C14408T C15540T C20474T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546837
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14097T C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546841
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G T26780C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546842
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546844
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546850
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G373A C1059T C3037T C10319T C14408T C20233T A23403G G25563T G25641T C27654T C27964T C28391A C28849T G28899T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546853
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1813A T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546860
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A G15438T T17863C A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546861
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2618G C3037T G10642T G11146T C13774T C14408T C15540T C20474T C20703T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546862
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2969G C3020T C3037T G4913T G8131T C14408T C17104T C21767T A23403G G25563T G26389T A26743G C27964T T27992C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546864
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5840C C14408T C16260T C16954A A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546871
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10626T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546880
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-7597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1684T C3037T C3397T A3580G C14408T C15952T C16260T C18129T A23403G G25563T C26110T C28453T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547035
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-5813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A13938G C14408T C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547191
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2025T C3037T G3692T G4399T A9750G C14408T A23403G G25563T G29736T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547312
 2020-06-25 2020-09-24
 United States hCoV-19/USA/TX-HMH-6207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T T23239C A23403G A23947G G25563T T26187C C26469G G26828T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549258 MW040686
 2020-06-25 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1476/2020
 AT1- C241T C1059T C3037T G11083T C14408T G15906T C18591T C20759T A23403G G25563T G28233T G28812C GGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29794-

EPI_ISL_549259 MW040687
 2020-06-25 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1477/2020
 ATTAAAGGTTT1- C241T C875T C1059T C3037T C5812T C14408T C20148T A23403G C25469T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_551549
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9025BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553710
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91BD11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C337T C3037T C7869T C14408T C18877T A23403G G25563T A25744G C26060T C26735T G28209T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556010
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-94F43D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1102T C3037T C8290T C14408T A16638G A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556595
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E328D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C534T C854T C3037T T5182C G5716T T10453C C10605T C11195T C14408T G14428T A23403G G28371T GGG28881AAC AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_556597
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E5397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556599
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E68B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G A24367G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556604
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E63A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C9073T C14408T A23403G G23868T G28378T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556609
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E617E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6825G C14408T C17118T T20526C A23403G GGG28881AAC C29530T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556614
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E623F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6825G C14408T C17118T T20526C A23403G GGG28881AAC C29530T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_556626
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E4B45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556991
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DF7D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T T16764Y C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556994
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DEDFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T C17028T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556996
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DF4E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557001
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E39F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T T16605C C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557004
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E153B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C G10097A C13536T C13730T C14408T T20427A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557005
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DF6F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T C17028T A17063G G17443T G18148T C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557022
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DDFBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G26724T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557024
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DE100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T C8208T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T C26942T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557026
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E0E9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10870K C14408T C16289T A23403G G25429T C26681T C29167T A29385G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557027
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DE08B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4741C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557046
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DA650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557051
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DD09B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T C17028T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557052
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E1762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C G10097A C13536T C13730T C14408T T20427A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557055
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E2F2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557057
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DFFD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557059
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DCD0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14708T A23403G C28232T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557060
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DDEFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C2062T A2810G C3037T C6395T A10317G A12410G C14408T C16323T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557066
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DE30A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10660C C13730T C14408T A23403G G25429T C28087T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557067
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DB75C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13730T C14408T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557076
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DE1C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557080
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E1814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T T16764Y C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557082
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E388B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2232T C3037T A3569G G3849T A6211G A8659G C14408T T16605C C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557083
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E2E8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557092
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D5646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T T4714C C7101T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557097
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E2B65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G315A C3037T T3154C T4885C G11230T C12439T C14408T G21724T C22326T A23403G G23587C G24781A GGG28881AAC G29033T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557106
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DEC69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A G10324A C14408T A20055G A23403G C23731T G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557109
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E2FF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A23403G C26029A C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557115
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D3CA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A A12928G C14408T A19650G C22079A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557123
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E2C26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550Y A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557124
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DD1F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7138C C8991T C11289T C14408T T15051C A20255G A23403G G28166A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557128
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DCF17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1400R C3037T C4002T G10097A C10369T C13536T C14408T C17028T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557135
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E2C53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A21972G A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557143
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E25EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557145
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B9402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11095T G14202T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557148
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DE249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G G24872T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557151
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D5190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A489G C3037T T5465C G6387A C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557157
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8DF7B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557159
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8E3988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C23525T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557163
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D5619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C18526T C19269T A23403G C23655T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559099
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-500469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559101
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-502652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7878C G10097A C14408T T16348C C21575T A23403G C23731T G28580T GGG28881AAC C29274Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559102
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-50335A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C14408T A23403G C28725T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559105
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5087B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G C23655T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559111
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5000B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2458T C3037T A4926C G6850T C12651T C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559116
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-502BDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1581C C3037T C4931T C5055T C14408T T19893C A23403G GGG28881AAC G29628C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559118
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-503ED1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559121
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-503F0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G C25614Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559122
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-503E2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559145
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-50287A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C G6850T C12651T C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559150
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-503B34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8650T G10265A C14408T C16887T G18907K A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559153
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-502F48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6525T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559155
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-508179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4741C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559161
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-508F33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130T C3037T C3170T C6336T A13182T C14408T C19961T G20006T A23403G C27673T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559162
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FE0B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C G6850T C12651T C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559165
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-503CB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8650T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559170
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-50229A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7126Y C9559T A9848G G10097A A10957G C14318T C14408T A23403G C23731T C28171M G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559175
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-502E2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559178
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-501ED3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630C C3037T G5012T C7764T G9479K C14408T A19810G G22112A A23403G G24236T C27092T C27679T C28603T GGG28881AAC C29466T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559179
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-502F39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24160G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559180
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-50859B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559182
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5089EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G C23655T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559184
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-508935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C9803A A10786G C10833T C14408T C18687T A23403G C25844T T27811C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559198
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-507DC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559200
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5092FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T C17028T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559208
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5026F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9559T A9848G G10097A A10957G C14318T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559210
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-508DC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G A6211G A8659G C14408T C14503Y A18141G C19488T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559214
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-500144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T G16741T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559229
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-50316F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19698T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559238
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-503396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24160R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559242
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-502EF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559251
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-505DF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C6638T G8371T G11083T C14408T T17351C C22477T A23403G G24124T G25563T G26199A C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559262
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5031D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559269
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-503BF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25217T C25350T C25731T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559272
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-50631B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559273
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-506409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6601G G11842A C14408T G15535T C16092T C21721T C21952T C23086T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559274
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-50040F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T A2641G C3037T C3622T T13857C C14408T C14676T G21119T A23403G C25844T C28087T G28690T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559293
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-508E81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21844T A23403G T24073C C27849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559297
 2020-06-25 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4FFF30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1581C C3037T C4931T C5055T C14408T T19893C A23403G GGG28881AAC G29628C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560637
 2020-06-25 2020-09-29
 France hCoV-19/France/IdF8679/2020
 ATTAAAGGTTTATACCTTCCC1- A26- C28T C241T A2097T T2537C C2710T C3037T T12226C C14408T A18777G A23403G C23802T T27299C C27923T GGG28881AAC C28915T T29148C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_560638
 2020-06-25 2020-09-29
 France hCoV-19/France/IdF8683/2020
 ATTAAA1- C241T G713T G2995T C3037T C4002T G10097A C13536T C14408T C18441T C21952T A23403G C23731T C25658T T26274C G26520A A27711T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_566080
 2020-06-25 2020-10-01
 Russia hCoV-19/Russia/MOW-RII-MH252S/2020
 ATTAAA1- C241T C3037T C3373A C6883T C14408T T16211G C16215A G21724A A23403G G28166A GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_566087
 2020-06-25 2020-10-01
 United States hCoV-19/USA/GA-CDC-5099/2020
 C241T C1288T G1298A C3037T C8208Y C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_566088
 2020-06-25 2020-10-01
 United States hCoV-19/USA/GA-CDC-5100/2020
 C241T C1288T G1298A C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_568997
 2020-06-25 2020-10-02
 France hCoV-19/France/IHU-0941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C10582T C11704T C14408T A20655G A23403G G25563T C27752T CCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29801-

MT810588
 2020-06-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1107-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T A2596G C3037T C7768T C11575T C14408T A20268G C21859T A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810589
 2020-06-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1108-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T C3037T C6636T C7768T C11575T C14408T A20268G A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT810594
 2020-06-25 2020-07-29
 United States SARS-CoV-2/human/USA/SEARCH-1114-SAN/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAAAGGTAAG1- C2143T A2596G C3037T C7768T C11575T C14408T A20268G C21859T A23403G C28854T CAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29675-

MT919769
 2020-06-25 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-3304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11083T C13051T C14408T C16726T C21597T A23403G A27224C GGG28881AAC C29144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MT947587
 2020-06-25 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2712/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C5392T A11246T C14408T C18877T A23403G A23949G G25563T C29013T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

MT955354
 2020-06-25 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-397a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_483608
 2020-06-26 2020-07-08
 Singapore hCoV-19/Singapore/585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C6310A C6312A G6653A C10833T G11083T A12556G C13730T C19524T C23185T C23929T T25333C C28311T AAAAAAAAAAAA29892-

EPI_ISL_483614
 2020-06-26 2020-07-08
 Singapore hCoV-19/Singapore/591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C6310A C6312A G11083T C13730T C19524T T22270C C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483615
 2020-06-26 2020-07-08
 Singapore hCoV-19/Singapore/592/2020
 ATTAAAGGTTTATA1- C21T C241T C3037T C3634T C9693T G11083T C14408T G14874T C15324T A23403G C27879T AAAAAAAAAAAA29892-

EPI_ISL_483618
 2020-06-26 2020-07-08
 Singapore hCoV-19/Singapore/595/2020
 A976G C4560T C6310A C6312A G11083T C13730T T17112C C19524T C23185T C23929T G25273T T26780C C28311T AAAAAAAAAAAA29892-

EPI_ISL_483686
 2020-06-26 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_204/2020
 C241T C1060A C3037T C4276T C14408T C18877T C22444T A23403G C23557T G25494T G25563T C26735T G28727T C28854T

EPI_ISL_483687
 2020-06-26 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_205/2020
 C241T A1163T C3037T A8026G C9502T G11083T C14408T A23403G C26895T GGG28881AAC

EPI_ISL_484686
 2020-06-26 2020-07-08
 United Kingdom hCoV-19/Wales/PHWC-1655EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C7119T T9292C A9713G T13827C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486517 LR860633
 2020-06-26 2020-07-10
 Switzerland hCoV-19/Switzerland/170002_454_B03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C584Y G910K G1319K G1619R T1873Y C2416Y C3037T T3142K T3144K T3477Y C3768Y G5138S T5260W A5563R C6696Y T6965Y T7527Y T7861Y C10029Y A10075W G11083K G11350K G11999K C14408T G14767K C15010Y G15307S C17044Y C18131Y A20742C A20979W C21658M T22516W A23403G A23531R C23816Y C24896Y G24933K C25386Y C25441Y G25447R C25936Y G26277R C26645Y A26993R C27643Y G28300R GGG28881AAC C29218Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486518 LR860642
 2020-06-26 2020-07-10
 Switzerland hCoV-19/Switzerland/170003_455_D02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3092M A3137R T3144W G3585R C10833T C14408T C15324T A23403G G28747T G28917T C29247T G29543T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486519 LR860639
 2020-06-26 2020-07-10
 Switzerland hCoV-19/Switzerland/170004_456_D01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2907W C3015Y C3037T T3073Y C6633T C10833T G13459T C14408T C15324T C15600T T23062C A23403G C27804Y G28747T G28917T G29543T G29745T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_486522 LR860636
 2020-06-26 2020-07-10
 Switzerland hCoV-19/Switzerland/170007_458_A03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3144D C4002T G5950K G10097R G10265R C13536T C14408T A15196R G19732T A23403G C23731T GGG28881AAC C29205S TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_487277
 2020-06-26 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0286/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C5974T C14408T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_489926
 2020-06-26 2020-07-14
 United States hCoV-19/USA/WI-GMF-07962/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C715T C1059T C1473T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489928
 2020-06-26 2020-07-14
 United States hCoV-19/USA/WI-GMF-08126/2020
 C241T C715T C1059T C1473T G2036T C3037T C11916T C14408Y G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490701
 2020-06-26 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR3936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491308 MT772404
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/IL-UW-627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491311 MT772447
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/IL-UW-670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C20703T A23403G G25563T A27343G C28087T G29332T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491312 MT772463
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/IL-UW-686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491317 MT772450
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/MA-UW-673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C A5553G C7823T C11074T C14408T C20104T C20698T G21438T A23403G C25710T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491318 MT772449
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/MN-UW-672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491321 MT772428
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/NY-UW-651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T G25654T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491324 MT772407
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T G10753T C14408T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491328 MT772412
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491335 MT772421
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G18985T A23403G G25563T G27147T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491336 MT772422
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491337 MT772423
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491339 MT772425
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491340 MT772426
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6627T C11379T C12921T C14408T T15354C C18877T A21852C A23403G G25563T C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491341 MT772427
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T G28881T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491342 MT772430
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T G28881T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491343 MT772433
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T4346C C9120T C14408T A19899T A21464G A23403G G25444A G25563T G28362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491344 MT772434
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491345 MT772435
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491347 MT772437
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9120T C14408T A19899T A21464G A23403G G25444A G25563T T26460C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491348 MT772438
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491349 MT772440
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8179T C9120T C14408T A19899T A21464G A23403G G25444A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491350 MT772441
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T G25654T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491351 MT772443
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491353 MT772445
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491356 MT772452
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491357 MT772453
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8016T C14408T A23403G G25563T T27384C C28892T G29766T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491358 MT772454
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491359 MT772455
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491363 MT772459
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491364 MT772460
 2020-06-26 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T C2401T C3037T A8651G C11916T C14408T C16114T G16957T C18555T G22403C A23403G A23586G G25563T C26753T C27845T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492075
 2020-06-26 2020-07-19
 North Macedonia hCoV-19/North Macedonia/ChVir7903/2020
 ATTAAAGGTTTAT1- C241T C313T C3037T G4148T C14408T A23403G C25169T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_492079
 2020-06-26 2020-07-19
 North Macedonia hCoV-19/North Macedonia/ChVir7908/2020
 ATTAAAGGTTTA1- C241T C313T C3037T T6547C C14408T C19343T A23403G C25731T A26435G C28677T GGG28881AAC G29701T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_492080
 2020-06-26 2020-07-19
 North Macedonia hCoV-19/North Macedonia/ChVir7909/2020
 ATTAAAGGTTTA1- C241T C313T C3037T G11083T C11455T C14408T A23403G GGG28881AAC G29427T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_493357
 2020-06-26 2020-07-21
 Norway hCoV-19/Norway/2790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6402T C14408T A16734G A20268G T22207C A23403G G24794T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493363
 2020-06-26 2020-07-21
 Norway hCoV-19/Norway/2797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6402T C14408T A16734G A20268G T22207C A23403G G24794T C28854T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493364
 2020-06-26 2020-07-21
 Norway hCoV-19/Norway/2798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11650A C14408T A23403G C23481T GG25203TT GGG28881AAC A29307G C29642T G29737T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493366
 2020-06-26 2020-07-21
 Norway hCoV-19/Norway/2800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16734G A20268G A23403G C23638T G24794T C28006T A28951G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493368
 2020-06-26 2020-07-21
 Norway hCoV-19/Norway/2802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6402T C14408T A16734G A20268G T22207C A23403G G24794T C28854T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_493371
 2020-06-26 2020-07-21
 Norway hCoV-19/Norway/2806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6402T C14408T A16734G A20268G A23403G G24794T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498143
 2020-06-26 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3624A C4052A C10029T C10449T C14408T T19839C C21646T A23403G C26846T GGG28881AAC C28915T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498144
 2020-06-26 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C241T C3037T C5467T C10954T C14408T C17285T C18877T C20698T A23403G G25563T C26735T G28166T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501108
 2020-06-26 2020-07-30
 United States hCoV-19/USA/WA-UW-12264/2020
 ATTAAA1- A31W AAC34TTT C241T A1556G C3037T C14408T C18486T A20268G T22162C A23403G C28854T C29870A -29904AAAAAAAAAAAAAA

EPI_ISL_501110
 2020-06-26 2020-07-30
 United States hCoV-19/USA/WA-UW-12396/2020
 ATTAAAGGTTTATA1- TCCC18GGGA C241T C1059T T1927C C3037T C7945T T8883C TT8885AA C10319T TA14222GC C14408T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_509651
 2020-06-26 2020-08-05
 Spain hCoV-19/Spain/COV005172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_511957
 2020-06-26 2020-08-10
 United Kingdom hCoV-19/England/BRIS-13312E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A11217R C14408T G19816K A23403G C25511Y G25563T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_511971
 2020-06-26 2020-08-10
 United Kingdom hCoV-19/England/BRIS-13314C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T G4300T C4780T C6638T T7792C C14408T C20759T G21724T A23403G C23758T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512254
 2020-06-26 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1949/2020
 ATTAAAGGTTTA1- C241T C3037T A14041G C14408T A20268G C23277T A23403G T24076C G25459T G25618A C28854T

EPI_ISL_512260
 2020-06-26 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1955/2020
 ATTAAAGGTTTA1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_512261
 2020-06-26 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_512262
 2020-06-26 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1959/2020
 C241T AAGTCATTT686- C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_512264
 2020-06-26 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_512265
 2020-06-26 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1962/2020
 ATTAAAGGTTTATACCT1- C241T C2143T C3037T C7768T C11575T G13126A C14408T A20268G A23403G C28854T

EPI_ISL_512269
 2020-06-26 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2143T C3037T C7768T C11575T C14408T A20268G C21707T A23403G G26196T C28854T

EPI_ISL_512270
 2020-06-26 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G C23277T A23403G T24076C G25459T G25618A C28854T

EPI_ISL_512647
 2020-06-26 2020-08-11
 Latvia hCoV-19/Latvia/092/2020
 C241T C313T C3037T C3602T C9114A C14408T A23403G T26424C G27147T GGG28881AAC

EPI_ISL_513269
 2020-06-26 2020-08-12
 United States hCoV-19/USA/FL-ACYG/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T A10323G C14408T T15276A A23403G C24198T G25563T G28842T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_513270
 2020-06-26 2020-08-12
 United States hCoV-19/USA/FL-ACYH/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G C24198T G25563T G28842T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_513271
 2020-06-26 2020-08-12
 United States hCoV-19/USA/FL-AD68/2020
 A1G C241T C1059T C3037T T3478C C4582T C13356T C14408T A22429G A23403G G25563T G28221T A28294C G29742T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_513272
 2020-06-26 2020-08-12
 United States hCoV-19/USA/FL-ADA1/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T G15906T C16457T C20759T C21058T A23403G G25563T G28812C C29838T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858C

EPI_ISL_513273
 2020-06-26 2020-08-12
 United States hCoV-19/USA/FL-ADA3/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T G14622A C20941T A23403G C23635T G25563T G28396A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_513275
 2020-06-26 2020-08-12
 United States hCoV-19/USA/FL-ADNP/2020
 ATTAAAGGTTTATACCTTCCCAG1- G24T C241T C1059T C3037T G3286A C14408T T16993C C17550T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_513277
 2020-06-26 2020-08-12
 United States hCoV-19/USA/FL-ADNR/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C673T C3037T T4125C C5700A C14408T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_514621 MT892968
 2020-06-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T GTTATG515- C3037T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514622 MT892969
 2020-06-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T G709T C1059T C3037T C3773T C7086T T14191C C14408T C16092T C16260T A23403G G23900C A24253T G25563T C28821A G29808T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_514625 MT892972
 2020-06-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C16260T A23403G G23900C A24253T G25563T C28821A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514626 MT892973
 2020-06-26 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A696C C3037T G3871T T3931C C6285T C14408T C19524T C20429T A23403G C28977T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514968
 2020-06-26 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2565/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16457T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514975
 2020-06-26 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2572/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T ACAAAAAAAAAAAAAA29869-

EPI_ISL_514976
 2020-06-26 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2573/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T T19680C A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514977
 2020-06-26 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2574/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AGAATGACAAAAAAAAAAAAA29863-

EPI_ISL_514978
 2020-06-26 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2575/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514979
 2020-06-26 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2576/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514980
 2020-06-26 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2577/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514981
 2020-06-26 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2578/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16457T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_514986
 2020-06-26 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2583/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T T28912C G29179T C29370T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_516613
 2020-06-26 2020-08-21
 Mexico hCoV-19/Mexico/Chihuahua-InDRE_43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C3768T G6421T T6640A C8739T C10319T C11575T C14408T C17502T A20262G G21305A A23403G G25563T C27964T C28087T C28868T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_516920
 2020-06-26 2020-08-24
 Israel hCoV-19/Israel/CVL5972/2020
 C241T C340T C1059T C3037T C11916T C13384T C14408T C18998T A23403G G25563T G26217T C27431T G29540A A29752T

EPI_ISL_517646
 2020-06-26 2020-08-24
 Suriname hCoV-19/Suriname/SR-35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T937C G1843T C3037T C14408T C15324T C16193T C18060T A22404T C22450T G22988A A23403G C28253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517648
 2020-06-26 2020-08-24
 Suriname hCoV-19/Suriname/SR-37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1558G G1843T C3037T C14408T C15324T C16193T C18060T A22404T C22450T A23403G C28253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517650
 2020-06-26 2020-08-24
 Suriname hCoV-19/Suriname/SR-39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C15324T C16193T C18060T A22404T C22450T A23403G C28253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517651
 2020-06-26 2020-08-24
 Suriname hCoV-19/Suriname/SR-40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C15324T C16193T C18060T A22404T C22450T A23403G C28253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517652
 2020-06-26 2020-08-24
 Suriname hCoV-19/Suriname/SR-41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C10741T C14408T C15324T C16193T C18060T A22404T C22450T A23403G C28253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517653
 2020-06-26 2020-08-24
 Suriname hCoV-19/Suriname/SR-42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7081T C14408T C15324T C16193T C18060T A22404T C22450T A23403G C28253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518231 MT971880
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G A27932G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520278 MT972653
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3529/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520291 MT972666
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3542/2020
 ATTA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520371 MT972746
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521489 MT972344
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2643/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521490 MT972345
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2644/2020
 ATTA1- C241T C3037T A6721T C14408T G21624C A23063T A23403G C26984T C27509T T28196C GGG28881AAC

EPI_ISL_521999 MT969419
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522004 MT969424
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522005 MT969425
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522030 MT969452
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522044 MT969466
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G343A A1163T C3037T T7540C A11600G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522070 MT972202
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_522071 MT972203
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522073 MT972205
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522075 MT972207
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522077 MT972209
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2357/2020
 ATTAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G C24082T GGG28881AAC

EPI_ISL_522078 MT972210
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522082 MT972214
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522083 MT972215
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2363/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_522085 MT972217
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522089 MT972221
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2369/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522104 MT972234
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2386/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522114 MT969478
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522115 MT969479
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522116 MT969480
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522130 MT972286
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522147 MT972245
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A25506G GGG28881AAC

EPI_ISL_522148 MT972246
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C10969T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522150 MT972248
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2444/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28674T GGG28881AAC C28961T

EPI_ISL_522151 MT972249
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2445/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522154 MT972252
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2448/2020
 ATTAAAGG1- C241T C1102T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522155 MT972253
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522160 MT972258
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2454/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522161 MT972260
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522163 MT972261
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522164 MT972262
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2458/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522166 MT972264
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G21255C G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522167 MT972265
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522168 MT972266
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2462/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522169 MT972267
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2463/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522170 MT972268
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2464/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522196 MT969492
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C10641T C14408T G16647T C18555T C21855T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522242 MT972201
 2020-06-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2558/2020
 AT1- C241T A1163T C2445T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_523461
 2020-06-26 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21621T A23403G G28090T GGG28881AAC C29739T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523462
 2020-06-26 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11222C C14408T C21621T A23403G G24620T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523602
 2020-06-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C622T C3037T G4657T T5182C C11758T C13059T C14408T C15324T G16846T C16887T C18744T A23403G C25075T C25904T C29733T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523627
 2020-06-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C622T C3037T G4657T T5182C C11758T C13059T C14408T C15324T G16846T C16887T C18744T A23403G C25075T C25904T C29733T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523629
 2020-06-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523630
 2020-06-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523663
 2020-06-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A A23403G G25523T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523669
 2020-06-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_523673
 2020-06-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_523676
 2020-06-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T TT7275GG A7750G C14408T A22106G G22592T A23403G A24862G A27674T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_523677
 2020-06-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_523681
 2020-06-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523682
 2020-06-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523684
 2020-06-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T TT7275GG A7750G C14408T A22106G G22592T A23403G A24862G A27674T C29409T TAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29826-

EPI_ISL_525492
 2020-06-26 2020-08-31
 Indonesia hCov19/Indonesia/JT-202538/2020
 ATT1- A26G C241T C3037T C5184T C10507T G14055T C14408T C18744T C18877T A23403G G25563T C26735T A26867G C27610T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525706 MT946870
 2020-06-26 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2716/2020
 ATTAAAGGTTTAT1- C241T C401T G487A C635T C1059T C3037T G11083T C14408T A19960G A23403G G25563T A27379C C27630T C28253T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525970
 2020-06-26 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1103/2020
 ATTAAAGGTTTATA1- C241T C313T C3037T C5183T A9162G C12357T C14408T C21575T G21586T T22276C A23403G GGG28881AAC

EPI_ISL_527018
 2020-06-26 2020-09-03
 Australia hCoV-19/Australia/NSW2456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5934T G13617T C14408T T15684C A23403G G25563T C25613T C26164T C27509T C27964T G28899A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528703
 2020-06-26 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/529/2020
 C241T C3037T A14266G C14408T G16677A G19824T A21081G C21306T A23403G C26681T G27708T GGG28881AAC

EPI_ISL_529106
 2020-06-26 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10376T T13339C C14408T G19525A A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_529107
 2020-06-26 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0709/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C3365T C11916T A12916T C13694T C14408T A23403G G25563T G28376T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_529108
 2020-06-26 2020-09-08
 United States hCoV-19/USA/SC-DHEC-0710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2143T C3037T C9561T C11916T C14230T C14408T A16839G C18998T A23403G G25563T G29540A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_533228
 2020-06-26 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-5FC442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3776G T8023C A8072G C14408T C21855T A23403G G25166C C26111T C26195T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533241
 2020-06-26 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-5FBFF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3776G T8023C A8072G C14408T C21855T A23403G G25166C C26111T C26195T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533247
 2020-06-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5FD0C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2939T C3037T C4455T C13965T C14408T C14786T G21606T A23403G G28044T GGG28881AAC A28972T G29465T C29679T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533248
 2020-06-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5F9885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533256
 2020-06-26 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-5FBE36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3176T A5608G A11794G A12026T C14408T C16470T C21365T A23403G T26298C G26450A A27399C A28856C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534237
 2020-06-26 2020-09-11
 Sweden hCoV-19/Sweden/20-52304/2020/P1
 C241T C3037T G4444T C5817T C11020T C14408T C18570T A23403G G28727T GGG28881AAC

EPI_ISL_534754
 2020-06-26 2020-09-14
 United Kingdom hCoV-19/England/LIVE-A983E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C2842Y C3037T C8683T C10432T C10854T C13335T C14408T A20268G A23403G C28854T C29870A

EPI_ISL_538390
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G4285A G6421C C11916T G14028T C14408T C18998T A20553G A23403G G25563T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_538391
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0768/2020
 C241T C1059T C3037T T7153C C14408T C16349T A16373C C21110T A23403G G25563T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_538392
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0772/2020
 ATTAAAGGTT1- C241T C3037T G4511A C10376T C10833T T13339C C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_538393
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10376T T13339C C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_538395
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C10376T T13339C C14408T G19525A A23403G G29540A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_538396
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G4285A G6421C C11916T C14408T C16173T C18998T A20553G A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_538397
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G G29540A AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_538399
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0863/2020
 ATTA1- C241T G246A C1059T C3037T C11916T C14408T A16839G C18109A C18998T A23403G G25563T C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_538400
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C745T C3037T C3540T A3722G G11417T C14408T G18213T A20268G A23403G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_538401
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2704T C3037T C5481T T7153C C14408T C16349T A16373C C21110T A23403G G25563T C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_538402
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C745T C3037T A3722G G11417T C14408T G18213T A20268G A23403G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538406
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0874/2020
 C241T C3037T C10376T T13339C C14408T A23403G C27964T C28846T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_538407
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C5147T C14408T C23185T A23403G T25392C G25429T A25470G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_538409
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T C13261T T13339C C14408T C16575T A23403G TTATAACAC27719- -28491CAATTAACA TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_538410
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C745T C3037T A3722G G11417T C14408T G14512T G18213T A20268G A23403G G29540A AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_538411
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G G29540A AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_538412
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G G29540A AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_538413
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0893/2020
 ATTAAAGGTTTA1- C241T C1059T G1408T C3037T C11916T C14408T C18998T A20553G A23403G C24023T G25563T G29540A AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_538417
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G G29540A AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_538418
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0925/2020
 ATTAAAGGTTTATACCT1- C241T C3037T G4511A C10376T C11074T T13339C C14408T C21846T A23403G C27532A G29540A AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_538420
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5826T C10376T T13339C C14408T T21775G A23403G G29540A AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_538421
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0930/2020
 ATTAAAGGTT1- C241T C3037T G4511A C10376T T13339C C14408T A23403G G28460T G29540A AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_538432
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11916T C14408T A16839G C18998T A23403G G25563T C25572T G29540A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_538433
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0882/2020
 T490A C3177T C6040T C8782T G12478A C17762T T18736C G18854A C24034T T25309G T26729C C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538434
 2020-06-26 2020-09-15
 United States hCoV-19/USA/SC-DHEC-0883/2020
 ATTAAAGGTTT1- C241T C745T C3037T A3722G G11417T C14408T G18213T A20268G A23403G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_539548
 2020-06-26 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2013597/2020
 C241T T445C C3037T C6286T C14408T C19017T C22227T A23403G C25665T C26801G C28932T G29645T

EPI_ISL_541663
 2020-06-26 2020-09-21
 United States hCoV-19/USA/SC-DHEC-1037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G1408T C3037T C11916T C14408T C18998T A20553G A23403G C24023T G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_541672
 2020-06-26 2020-09-21
 United States hCoV-19/USA/SC-DHEC-0932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10376T T13339C C14408T G19525A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_541673
 2020-06-26 2020-09-21
 United States hCoV-19/USA/SC-DHEC-0934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2447T C3037T C10376T C10789T T13339C C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_541674
 2020-06-26 2020-09-21
 United States hCoV-19/USA/SC-DHEC-0935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C745T C3037T A3722G G11417T C14408T G18213T A20268G A23403G C28854T C29363T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_541675
 2020-06-26 2020-09-21
 United States hCoV-19/USA/SC-DHEC-0937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C843T C3037T C10376T T13339C C14408T T18660C A23403G G26849T GGG28881AAC G29254T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_541677
 2020-06-26 2020-09-21
 United States hCoV-19/USA/SC-DHEC-0942/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T A16839G C18998T A23403G G25563T C25572T G29540A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_541678
 2020-06-26 2020-09-21
 United States hCoV-19/USA/SC-DHEC-0943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C10376T T13339C C14408T G19525A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_541679
 2020-06-26 2020-09-21
 United States hCoV-19/USA/SC-DHEC-0945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G1408T C3037T C11916T C14408T C18998T A20553G A23403G C24023T G25563T G29540A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_544569
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C3593T A3933G C14408T C14676T A23403G G25647T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544572
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C2044T C3037T C3737T G4105T C14408T C15720T A23403G GGG28881AAC G28985A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544602
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25019T G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544607
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16914T C20474T A23403G T23443C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544623
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544661
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1545T C1884T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544716
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2062T C3037T A3956G C9967T G10902A T10906C C14408T C18687T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544738
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G2534A C3037T C11916T C14408T A23403G A23586G G25563T G27478T A29653G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544757
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10202T C14408T C23191T A23403G G25563T C26111T G27987T G28085A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544760
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G2534A C3037T C11916T C14408T A23403G A23586G G25563T G27478T A29653G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544764
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T CC1059TT G2849A C3037T C14408T C23277T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544766
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G A28984G C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544797
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544800
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C20233T A23403G G25563T G25641T C27964T C28391A C28849T G28899T G29540T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544848
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C1059T C3037T C14408T G15438T A18818G C20404T A23403G G25494T G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544850
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1225T G2030A C3037T C9430T C14408T C16616T C19011T G19429A A23403G C25156T A26519G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544860
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544875
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A A2568G C3037T C8752T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545582
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545583
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1907C C3037T C3737T C10015T C14408T G14829T C15654T C23191T A23403G G25563T C26082T G26769T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545587
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A C14408T A19433T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545589
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G C29311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545591
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2324A A2969G C3037T C11124T C13274T C14408T C17104T G19816T A23403G G25563T G26389T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545595
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11758T C14408T C16260T A23403G C23625T G25563T C27294T G27955A C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545596
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1545T C1884T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545599
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1836T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545600
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3069G T6658C G7798T T11134C C14408T C19011T C19185T A23403G C25463T G25819A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545606
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2102T C3037T C6606T A8580T C10188T G12332T C13356T C14408T A23403G C23683T T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545614
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545615
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9073T C14408T C22747T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545619
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G C29311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545625
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T G11842T C13487T C14408T C15495T C16192T C16260T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545633
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T T14067C C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T T27656C C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545721
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5106C G8006A C9907T A10042G T12094C C14408T C18189T C18246T A23403G GGG28881AAC G29734A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546065
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-6538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1820A C3037T C14408T G15452T G17151T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546066
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-6540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546067
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-6541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2070T G2282A A2317T C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546231
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-6768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546299
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-6863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12119T C12754T C14408T A23403G T25622C C27549T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546306
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-6870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T T17137C A23403G G25563T C25584T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546443
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546688
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4890T C5055T C14408T T20769C C22444T G23224T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546709
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4890T C5055T T6868C C14408T T20769C C22444T G23224T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546792
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G213A C241T C3037T T3169C T5071C G11083T G12167A C14408T T20529C A23403G C28706T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546793
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G C25460T G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546794
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2510T C3037T A10323G C14408T T15276A A23403G G25563T G28842T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546795
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A23403G A23947G G25563T T26187C C26469G G26828T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546869
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C12484T C14408T C16017T C18568T T19284C A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546879
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546885
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T G3433A C13487T C13647T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546889
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1268A C3037T C3817T T9232C C10507T C11747T C14408T A23403G G25563T A26319G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546892
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1685A C3037T A10323G C14408T T15276A G22241A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546893
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546895
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T C18568T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546896
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T G4136T C14408T G19069T A23403G G28179C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546897
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A385T C958T C1059T G1526T C3037T C14408T C23170T A23403G G23587T G25456T G25563T C27964T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546900
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T3127C G4148T G4399T C14408T G17808T A23403G G25563T C27964T T28705C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546902
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T C3768T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546904
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T G8861A C9565T T9742C C14376T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546905
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1890A C3037T C9870T C14408T C20474T A23403G C25708T G27074T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546906
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T C4931A G9479T T11182C C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546907
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T A4851G C4931A G9479T C14408T C17119A C18508T C23191T A23403G C23638T G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546908
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1836T C3037T A10323G G11083T C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546909
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T C14408T A23403G G25563T C26625T C27964T G29781T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546911
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1059T C3037T C10319T C14408T T17751G A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T T29760C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546914
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1495T C3037T T7332C T7831A C14408T C16376T A23403G G25563T C27498T G28362C G28845T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546920
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6421T A10323G C14408T T15276A G18255T A23403G G25284T G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546921
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12756T C14408T C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546922
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1551T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546925
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G1085A G2282A C3037T C9298T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546932
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-7676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4162T C9163A C9430T C10188T C12534T C14408T C16694T C21998T A23403G T24982C G25302T G25563T G27390C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546957
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546968
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6304G G9220A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546999
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C22594A A23403G G25563T G25907T C27434T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547000
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-5768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547162
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-6007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2324A A2969G C3037T C13274T C14408T C17104T G19816T A23403G C25546T G25563T G26389T C27964T G28703C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547168
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-6013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T G8861A C9565T T9742C C14376T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547394
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-6330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G248T C335T C1059T C3037T C4524T C9120T A12197C C14408T C15720T T16425G G17019T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547402
 2020-06-26 2020-09-24
 United States hCoV-19/USA/TX-HMH-6340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553322
 2020-06-26 2020-09-28
 United Kingdom hCoV-19/England/ALDP-91AC51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9479T G10097A G10540T C14408T A19946G A23403G C23731T G24193C G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553330
 2020-06-26 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-90C77F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6633T G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556987
 2020-06-26 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D19D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T C14408T C22224T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557023
 2020-06-26 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D2290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G199T C241T A2526C C3037T C10440T C14408T C17163T C21575T A23403G G25186T T25316C A27086W GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557078
 2020-06-26 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8CF454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T A17841G C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557088
 2020-06-26 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8CED1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557090
 2020-06-26 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D1E9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C5730T C14408T A23403G GGG28881AAC G29017T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557100
 2020-06-26 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8CF09C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6638T A9433T G10265A C14408T A19650G G19788A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557139
 2020-06-26 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8CF1A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2893T C3037T C14408T G21586T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559114
 2020-06-26 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F486D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C14408T C21575Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559123
 2020-06-26 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F7C31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9994T G10265A T13794G C14408T A23403G GGG28881AAC G29543T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560308
 2020-06-26 2020-09-28
 Russia hCoV-19/Russia/SVE-RII-MH182S/2020
 ATTA1- C217T C241T A2775G C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_564288
 2020-06-26 2020-09-30
 Australia hCoV-19/Australia/VIC7215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_566025
 2020-06-26 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G248T C335T C1059T T2330G C3037T C5672T C9120T A12197C G12731A C14408T T16425G C21846T C22450T A23403G G25563T T27384C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_566102
 2020-06-26 2020-10-01
 United States hCoV-19/USA/GA-CDC-5122/2020
 C241T C1288T G1298A C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

MT731738
 2020-06-26 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_204/2020
 C241T C1060A C3037T C4276T C14408T C18877T C22444T A23403G C23557T G25494T G25563T C26735T G28727T C28854T

MT731739
 2020-06-26 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_205/2020
 C241T A1163T C3037T A8026G C9502T G11083T C14408T A23403G C26895T GGG28881AAC

MT919770
 2020-06-26 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-3353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3938C C14408T A23403G GGG28881AAC G28908T A29735G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT981488
 2020-06-26 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10376T T13339C C14408T G19525A A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT981489
 2020-06-26 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0709/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C3365T C11916T A12916T C13694T C14408T A23403G G25563T G28376T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT981490
 2020-06-26 2020-09-08
 United States SARS-CoV-2/human/USA/COVID20-0710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2143T C3037T C9561T C11916T C14230T C14408T A16839G C18998T A23403G G25563T G29540A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MW002806
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G4285A G6421C C11916T G14028T C14408T C18998T A20553G A23403G G25563T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

MW002807
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0768/2020
 C241T C1059T C3037T T7153C C14408T C16349T A16373C C21110T A23403G G25563T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

MW002808
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0772/2020
 ATTAAAGGTT1- C241T C3037T G4511A C10376T C10833T T13339C C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

MW002809
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10376T T13339C C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

MW002811
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C10376T T13339C C14408T G19525A A23403G G29540A AAAAAAAAAAAAAAAAAAAAA29883-

MW002812
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G4285A G6421C C11916T C14408T C16173T C18998T A20553G A23403G G25563T G29540A AAAAAAAAAAAAAAAAAAAAAAAA29880-

MW002813
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G G29540A AAAAAAAAAAAAAAAAAAAAAA29882-

MW002815
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0863/2020
 ATTA1- C241T G246A C1059T C3037T C11916T C14408T A16839G C18109A C18998T A23403G G25563T C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MW002816
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C745T C3037T C3540T A3722G G11417T C14408T G18213T A20268G A23403G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MW002817
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2704T C3037T C5481T T7153C C14408T C16349T A16373C C21110T A23403G G25563T C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MW002818
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C745T C3037T A3722G G11417T C14408T G18213T A20268G A23403G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MW002822
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0874/2020
 C241T C3037T C10376T T13339C C14408T A23403G C27964T C28846T AAAAAAAAAAAAAAAAAAAAAAA29881-

MW002823
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C5147T C14408T C23185T A23403G T25392C G25429T A25470G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MW002825
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T C13261T T13339C C14408T C16575T A23403G TTATAACAC27719- -28491CAATTAACA TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MW002826
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C745T C3037T A3722G G11417T C14408T G14512T G18213T A20268G A23403G G29540A AAAAAAAAAAAAAAAAAAAA29884-

MW002827
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G G29540A AAAAAAAAAAAAAAAAAAAA29884-

MW002828
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G G29540A AAAAAAAAAAAAAAAAAAAA29884-

MW002829
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0893/2020
 ATTAAAGGTTTA1- C241T C1059T G1408T C3037T C11916T C14408T C18998T A20553G A23403G C24023T G25563T G29540A AAAAAAAAAAAAAAAAAAAA29884-

MW002833
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4511A C10376T T13339C C14408T A23403G G29540A AAAAAAAAAAAAAAAAAAAAAAA29881-

MW002834
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0925/2020
 ATTAAAGGTTTATACCT1- C241T C3037T G4511A C10376T C11074T T13339C C14408T C21846T A23403G C27532A G29540A AAAAAAAAAAAAAAAAAAAA29884-

MW002836
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5826T C10376T T13339C C14408T T21775G A23403G G29540A AAAAAAAAAAAAAAAAAAAA29884-

MW002837
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0930/2020
 ATTAAAGGTT1- C241T C3037T G4511A C10376T T13339C C14408T A23403G G28460T G29540A AAAAAAAAAAAAAAAAAAAA29884-

MW006605
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11916T C14408T A16839G C18998T A23403G G25563T C25572T G29540A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MW006606
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0882/2020
 T490A C3177T C6040T C8782T G12478A C17762T T18736C G18854A C24034T T25309G T26729C C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MW006607
 2020-06-26 2020-09-15
 United States SARS-CoV-2/human/USA/COVID20-0883/2020
 ATTAAAGGTTT1- C241T C745T C3037T A3722G G11417T C14408T G18213T A20268G A23403G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MW021454
 2020-06-26 2020-09-21
 United States SARS-CoV-2/human/USA/COVID20-1037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G1408T C3037T C11916T C14408T C18998T A20553G A23403G C24023T G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MW021463
 2020-06-26 2020-09-21
 United States SARS-CoV-2/human/USA/COVID20-0932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10376T T13339C C14408T G19525A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MW021464
 2020-06-26 2020-09-21
 United States SARS-CoV-2/human/USA/COVID20-0934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2447T C3037T C10376T C10789T T13339C C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MW021465
 2020-06-26 2020-09-21
 United States SARS-CoV-2/human/USA/COVID20-0935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C745T C3037T A3722G G11417T C14408T G18213T A20268G A23403G C28854T C29363T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

MW021466
 2020-06-26 2020-09-21
 United States SARS-CoV-2/human/USA/COVID20-0937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C843T C3037T C10376T T13339C C14408T T18660C A23403G G26849T GGG28881AAC G29254T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MW021468
 2020-06-26 2020-09-21
 United States SARS-CoV-2/human/USA/COVID20-0942/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T A16839G C18998T A23403G G25563T C25572T G29540A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MW021469
 2020-06-26 2020-09-21
 United States SARS-CoV-2/human/USA/COVID20-0943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C10376T T13339C C14408T G19525A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MW021470
 2020-06-26 2020-09-21
 United States SARS-CoV-2/human/USA/COVID20-0945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G1408T C3037T C11916T C14408T C18998T A20553G A23403G C24023T G25563T G29540A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_483611
 2020-06-27 2020-07-08
 Singapore hCoV-19/Singapore/588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C6310A C6312A G11083T C13730T C19524T T22270C C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_483688
 2020-06-27 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_206/2020
 C241T A1163T G2585T C3037T C3961T C14408T A19008C T20592C C21575T C21846T A23403G G23608T A24970G G25907T G26230T T26903C C28006G GGG28881AAC

EPI_ISL_483689
 2020-06-27 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_207/2020
 C241T A1163T C3037T A8026G C9502T G11083T C14408T A23403G C26895T GGG28881AAC

EPI_ISL_483690
 2020-06-27 2020-07-08
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_208/2020
 C241T A1163T C3037T T9016C C14408T A16275G A23403G T26726A GGG28881AAC

EPI_ISL_484691
 2020-06-27 2020-07-08
 United Kingdom hCoV-19/Wales/PHWC-165633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_484967 MT750171
 2020-06-27 2020-07-08
 United States SARS-CoV-2/human/USA/IL-UW-592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484968
 2020-06-27 2020-07-08
 United States hCoV-19/USA/WI-UW-593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C -10387T C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484969 MT750172
 2020-06-27 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T A16387T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484972 MT750175
 2020-06-27 2020-07-08
 United States SARS-CoV-2/human/USA/NY-UW-597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T G18985T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484973 MT750176
 2020-06-27 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484981 MT750182
 2020-06-27 2020-07-08
 United States SARS-CoV-2/human/USA/CA-UW-606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486516 LR860634
 2020-06-27 2020-07-10
 Switzerland hCoV-19/Switzerland/170001_454_D09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C906Y G1590R G1727R C1968Y C3037T C3236Y T3352W C3464M C3486Y T3555W C3702S T4213K G4488R A5198R T5779Y A7786R A8348R C8394Y G8522K T10076W T11112Y T11147Y C11171Y C11300Y C11471Y T11654Y G11851K A13367M C13862Y C14408T C15324Y G17370S T18748Y T19189Y T20261W C20628Y A20743R T20783W A21261W G21569R A21791W G22158K G22205C G22989K A23167R A23403G C24621Y G24693R A25873R G26227K A27745R GGG28881AAC G28985R G29105K G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_490702
 2020-06-27 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR3938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T C23029T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490763
 2020-06-27 2020-07-15
 United Kingdom hCoV-19/Wales/PHWC-165ACE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_491299 MT772432
 2020-06-27 2020-07-16
 United States SARS-CoV-2/human/USA/AZ-UW-655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491316 MT772410
 2020-06-27 2020-07-16
 United States SARS-CoV-2/human/USA/MA-UW-633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T G18985T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491333 MT772419
 2020-06-27 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTTATG515- C3037T C14408T C22747T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491361 MT772457
 2020-06-27 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9721C C12025T C14408T T19839C C19955T A23403G C23707T G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491367 MT772464
 2020-06-27 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491371 MT772469
 2020-06-27 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C A5553G C7823T C11074T C14408T G21438T A23403G C25710T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492077
 2020-06-27 2020-07-19
 North Macedonia hCoV-19/North Macedonia/ChVir7905/2020
 ATTAAAGGTT1- C241T C313T C3037T G3403T C6548T G11540T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_492078
 2020-06-27 2020-07-19
 North Macedonia hCoV-19/North Macedonia/ChVir7907/2020
 ATTAAAGGTT1- C241T C313T C3037T A3780G G4148T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_492081
 2020-06-27 2020-07-19
 North Macedonia hCoV-19/North Macedonia/ChVir7911/2020
 ATTAAAGGTTT1- C241T C313T C3037T CA10259GT C14408T G19101T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_493370
 2020-06-27 2020-07-21
 Norway hCoV-19/Norway/2805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6402T C14408T A16734G A20268G T22207C A23403G G24794T C26228T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493985
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166359/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_493990
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1663A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_493992
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1663C2/2020
 ATTAAAGGTT1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_493993
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1663D1/2020
 ATTAAAGGTTTATACC1- C241T C3037T C6500A C13019Y A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494001
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166474/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_494008
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1664FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494010
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166517/2020
 ATTAAAGGTTTATACC1- C241T C3037T C6500A T11587C A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_494020
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1665CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T C29870M

EPI_ISL_494026
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-16666F/2020
 ATTAAAGGTTTA1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494028
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-16668D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T G28904T

EPI_ISL_494036
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-16676C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494043
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1667F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494044
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-16680F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C17249Y C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494050
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166869/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C6500A T11587C A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_494053
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166896/2020
 AT1- C241T C3037T C6500A C10341T T11587Y A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T AAAAAAAAAAAA29892-

EPI_ISL_494057
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1668E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494058
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-1668F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494059
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-16690C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A9343G A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494060
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-16691B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C21242T A21611T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494062
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C20199Y C21242T A23403G G26450T GGG28881AAC C28890T C29870M

EPI_ISL_494075
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166A72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_494077
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166ABE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C6500A A13953G C14408T C21242T A21611T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494078
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166ACD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T G29742C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494080
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166AEB/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_494088
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166B8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1188T C3037T C4668Y C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494091
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166BCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A2726R C3037T C6500A A13953G C14408T C18431Y C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494094
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166C03/2020
 ATTAAAGGTTTATACC1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494099
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166C8B/2020
 ATTAAA1- C241T C3037T C6500A T11587C A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T AAAAAAAAA29895-

EPI_ISL_494106
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166D2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1188T C3037T C4668T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494109
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166D6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C17249Y C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494115
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166DD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494118
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166E1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494121
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166E58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T G28727K GGG28881AAC C28890T

EPI_ISL_494130
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166F0A/2020
 ATT1- C241T C3037T C6500A T11587C A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_494133
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-166F64/2020
 ATTAAAGGTTT1- C241T C3037T C6500A T11587C A13953G C14408T C21242T A23403G G24764R G26450T GGG28881AAC C28890T

EPI_ISL_494146
 2020-06-27 2020-07-21
 United Kingdom hCoV-19/Wales/PHWC-167060/2020
 ATTA1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T

EPI_ISL_499377
 2020-06-27 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168FCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2488T C3037T C3551T T5573C C6380T C7420T G11801A G13624K C14408T C15960T T19839C A23403G G24586T C25275T G25552T GGG28881AAC T29607C

EPI_ISL_499780
 2020-06-27 2020-07-28
 United Kingdom hCoV-19/England/NORT-29361D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501109
 2020-06-27 2020-07-30
 United States hCoV-19/USA/WA-UW-12372/2020
 ATTAAAGGTTTATACCTTCCCAGG1- AAC34TTT C241T C1059T T1927C C3037T C10319T C14408T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501111
 2020-06-27 2020-07-30
 United States hCoV-19/USA/WA-UW-12446/2020
 ATTAAAGGTTTATA1- TCCC18GGGA A34T C36T C241T C3037T T14222B C14408T C18486T A18640G A20268G C20759T T22162C C23029T A23403G C28854T C29743T -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501112
 2020-06-27 2020-07-30
 United States hCoV-19/USA/WA-UW-12596/2020
 ATTAAAGGTTTATACCTTCC1- G23D AAC34TWT C241T C3037T G9928A C12488T C14408T A23403G C25528T G27084A GGG28881AAC G29402C G29868A C29870A

EPI_ISL_508419
 2020-06-27 2020-08-04
 India hCoV-19/India/MN32/2020
 A4- C241T T1947C C3037T C11669T C14408T C18877T C22444T A23403G G23593T G25563T C26735T C26801T C28854T

EPI_ISL_509652
 2020-06-27 2020-08-05
 Spain hCoV-19/Spain/COV005173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13501T C13536T C14408T C21575T C21952T A23403G C23731T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509653
 2020-06-27 2020-08-05
 Spain hCoV-19/Spain/COV005174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_509654
 2020-06-27 2020-08-05
 Spain hCoV-19/Spain/COV005175/2020
 ATTAAAGG1- C241T C3037T C4002T G10097A C13501T C13536T C14408T C21575T C21952T A23403G C23731T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509997
 2020-06-27 2020-08-05
 United States hCoV-19/USA/WI-UW-814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TAAAGTCATT684- A696C C3037T G3871T T3931C C4226T C5055T C5672T A7837C G9856T C14408T T14700C G16647C A23403G C25854T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512562 MT893674
 2020-06-27 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0756/2020
 ATTAAAGGTTTA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T A23403G G25563T C28087T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_512563 MT893675
 2020-06-27 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C3828T C4456T G8131T C12747T C14408T C18647T C20016T G21204T A23403G C25916T T27299C GGG28881AAC T29148C C29769T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_512565 MT893677
 2020-06-27 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0759/2020
 ATTAAAGGTT1- C241T C815T C3037T C3411T C8956T T10795C C14408T C18452T A23403G G25437T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_513276
 2020-06-27 2020-08-12
 United States hCoV-19/USA/FL-ADNQ/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C673T G1580A C3037T T4125C C14408T C19269T A23403G G27561T GGG28881AAC GG29861TC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_514197 MT890330
 2020-06-27 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0851/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C10319T C14408T G16710T G20176T A23403G A25121T G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514982
 2020-06-27 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2579/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16457T C16650T A20675T A23403G G25563T G29179T G29779T ACAAAAAAAAAAAAAA29869-

EPI_ISL_514983
 2020-06-27 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2580/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T C29370T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514984
 2020-06-27 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2581/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T C29370T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_514985
 2020-06-27 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2582/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C16650T C19983T A20675T A23403G G25563T G29179T G29779T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_514987
 2020-06-27 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2584/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C14408T G16647T C16650T A20675T A23403G G25563T G29179T C29370T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_514988
 2020-06-27 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2585/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T G7599A T7605A A10124G C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516427
 2020-06-27 2020-08-20
 North Macedonia hCoV-19/North Macedonia/5220/2020
 ATTA1- C241T C313T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516609
 2020-06-27 2020-08-21
 Mexico hCoV-19/Mexico/BC-InDRE_45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C11074T C14408T A16052G A20268G A23403G T24076C G25690T C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_517654
 2020-06-27 2020-08-24
 Suriname hCoV-19/Suriname/SR-43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C10741T C14408T C15324T C16193T C18060T A22404T C22450T A23403G A23901C C28253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_520617 MT970279
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3905/2020
 ATTAAAGGTTTATACCTTC1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521645 MT969483
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G6553T T7540C C14408T G16647T C16887T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521993 MT969411
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18275T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521994 MT969412
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T ATG3546- T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521997 MT969417
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522001 MT969421
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522002 MT969422
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C14408T A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_522003 MT969423
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A5323G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522006 MT969426
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2284/2020
 ATTAAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522007 MT969427
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522008 MT969428
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522009 MT969429
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2287/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522010 MT969430
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2288/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C11514T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522011 MT969431
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_522013 MT969433
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522080 MT972212
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522131 MT972287
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522132 MT972288
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2422/2020
 ATTA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522133 MT972289
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2423/2020
 ATTAAAGGTT1- C241T A1163T C3037T C5812T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522134 MT972290
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522135 MT972291
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2425/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522136 MT972292
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522137 MT972293
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522141 MT972297
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2432/2020
 ATTAAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522159 MT972257
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522175 MT972273
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522176 MT972274
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2473/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C17135T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522177 MT972275
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522200 MT969436
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C3037T C14408T A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_522235 MT972312
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2548/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522236 MT972313
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2549/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522237 MT972314
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A5353G T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G A28624G GGG28881AAC

EPI_ISL_522238 MT972315
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522239 MT972316
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2553/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522240 MT972317
 2020-06-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_523463
 2020-06-27 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12733T C14408T C21621T A23403G G26918A G28090T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523508
 2020-06-27 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T C17304T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523631
 2020-06-27 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523680
 2020-06-27 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1912T C3037T TT7275GG C14408T C18555T C22450T A23403G A24862G A27674T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_525804
 2020-06-27 2020-09-01
 United States hCoV-19/USA/CA-OHSU-0857/2020
 ATTAAAG1- C241T C3037T C14408T A20268G C20759T G21761T A23403G T24076C C24149T C28854T

EPI_ISL_525891
 2020-06-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18486T C18568T A20268G T22162C A23403G C28854T

EPI_ISL_525895
 2020-06-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1346T C3037T C7765T T13472C C14408T G18816T A20268G A23403G C28854T G29050T G29557T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_525897
 2020-06-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8818T C14408T C15952T G20980A A23403G A29538G

EPI_ISL_525898
 2020-06-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G425C C1059T T2680C C3037T G3182A C3768T T7057C C14408T C16323T G22203T A23403G G25563T C28311T T29536C

EPI_ISL_533232
 2020-06-27 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-5FDA9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T C1101T G2381T C3037T T4579A C7011T C14408T A23403G A25798G G27463A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533234
 2020-06-27 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-5FF39D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C3037T C6026T C6255T C7164T C13264Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533236
 2020-06-27 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-5FE932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- GTCATGTTA510- A2480G C2558T G11083T C14805T C16178T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533263
 2020-06-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5FE64A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9355A C14408T T22774C A23403G C23683T C28674T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533266
 2020-06-27 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-5FF88F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1387T C1420T C3037T C9967Y C14408T A19887R A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533268
 2020-06-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5FE000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7764T C10833T T11078C C12473Y C14408T T15723C C19374T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534238
 2020-06-27 2020-09-11
 Sweden hCoV-19/Sweden/20-52306/2020/P1
 G204T C241T C1059T G1784A C3037T C14408T G15380T G15438T G20940T A23403G G25563T T25885C T29612C G29736T

EPI_ISL_541002
 2020-06-27 2020-09-22
 South korea hCoV-19/South Korea/IHC17695/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T G16647T C16650T A20675T A23403G G25563T G29179T C29370T G29779T ACAAAAAAAAAAAAAA29869-

EPI_ISL_546006
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T C10319T C14408T A23403G G25563T G25641T C26078T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546007
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AC1058GT C1150T C3037T C3966T C10319T C14408T C17977T T18927C A23403G G24812T G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546008
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T G14829T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546009
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3069G T6658C G7798T T11134C C14408T C19011T C19185T A23403G C25463T G25819A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546010
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6052A C10319T C14408T G19872T C20178T C21304T A23403G G25563T G25855T C27964T G29254T G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546011
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T C8106T T9742C C10626T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546014
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G A28305G C29095T T29128C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546017
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4105T C10188T C14408T A23403G T24982C G25563T C27964T T28208C G29140A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546020
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6052A C10319T C14408T G19872T C20178T C21304T A23403G G25563T G25855T C27964T G29254T G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546021
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11758T C14408T C16260T A23403G C23625T G25563T C27294T G27955A C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546022
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G16014T C16260T A23368G A23403G G25563T G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546025
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T3256C A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546026
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6896T C10319T C11455T C14408T C16308T C16694T A23403G G25445T G25563T A25986T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546027
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1150T C3037T C10319T C14408T C17977T A23403G G24812T G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546028
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C794A G2282A C3037T T9742C C14408T C17639T A23403G C24026T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546029
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2536T C3037T C7072T A10286G C14408T G16852T A23403G C24374T C25513T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546031
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T G2448A C3037T C13862T C14408T T16425G C17639T A23403G T23776C G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546033
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T T9861C C10319T C14408T C16289T A23403G G23755T G25563T G25641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546036
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C10376T C13487T C14408T C16192T C16260T G19666T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546037
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1907C C3037T C10015T C14408T G14829T C15654T C19586T C23191T A23403G G25563T G26769T C28854T C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546038
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10626T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546039
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2228C C3037T C14408T C16163T C20133T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546040
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5822A C14408T C19011T C21057T A23403G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546041
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T C1059T C3037T C9967T G10902A C14408T C18687T C20429T A23403G G25563T G27842T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546042
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546043
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29425A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546044
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21622T C21707T C22295T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546045
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546046
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4810A C14408T C18486T A20268G T22162C A23403G C28854T G29688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546047
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2086T C3037T C10319T G11113T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546048
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2228C C3037T C14408T C16163T C20133T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546049
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2919T C3037T C5822A C14408T C19011T C21057T A23403G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546051
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T G24368T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546055
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546056
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G A29567G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546058
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546059
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G T13794C C14408T T15276A C19402T A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546060
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9712T C14408T T19839C T20257G A23403G T25435C GGG28881AAC C29085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546061
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546062
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12756T C14408T C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546335
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1729T C3037T C13862T C14408T A23403G C24023T G25563T C27964T C28344T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546361
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T3256C A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546365
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C12534T C14408T C17639T C19170T A23403G C24912T C28006T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546489
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-7082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1150T C3037T C10319T C14408T T16993C C17977T A18410G A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547181
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C774A C1059T C2025T C3037T G3206C G3692T C8606T A9750G C14408T C22639T C23230T A23403G T24295C G25563T C26313T G29736T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547222
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13126T C14408T C18508T C20474T A23403G C23481T C25465T G26909T C27575T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547293
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C11471T C14408T G17562T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547390
 2020-06-27 2020-09-24
 United States hCoV-19/USA/TX-HMH-6322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T T11134C C14408T A18535G C19011T T23227G A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549262 MW040690
 2020-06-27 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1480/2020
 AT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T T16857A A23403G G25563T C28087T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_551365
 2020-06-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9051F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A C3037T C14408T T19059C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556588
 2020-06-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8BD240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G18433T A19650G A22459G A23403G G27841T A27938G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556610
 2020-06-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8C8E8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21844T A23403G G23755K T24073C G25437T C27849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556619
 2020-06-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8C95B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6659G G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557007
 2020-06-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8BAD33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5183T A8072G C8739Y C14408T T21154G A23403G G25166C GGGGAACTT28881- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557679
 2020-06-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FF806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559205
 2020-06-27 2020-09-28
 United Kingdom hCoV-19/England/ALDP-4F4F3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16853T G21255T C21637T A23403G G24872T A28169G GGG28881AAC A29638T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561212
 2020-06-27 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-1168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C14408T G17679T C18490A A20268G C20480T G21830T G23349T A23403G C25886T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564268
 2020-06-27 2020-09-30
 Australia hCoV-19/Australia/VIC7185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566096
 2020-06-27 2020-10-01
 United States hCoV-19/USA/GA-CDC-5112/2020
 C241T C1288T G1298A C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_566104
 2020-06-27 2020-10-01
 United States hCoV-19/USA/GA-CDC-5124/2020
 C241T C1288T G1298A C3037T C13536T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

MT731740
 2020-06-27 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_206/2020
 C241T A1163T G2585T C3037T C3961T C14408T A19008C T20592C C21575T C21846T A23403G G23608T A24970G G25907T G26230T T26903C C28006G GGG28881AAC

MT731741
 2020-06-27 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_207/2020
 C241T A1163T C3037T A8026G C9502T G11083T C14408T A23403G C26895T GGG28881AAC

MT731742
 2020-06-27 2020-07-08
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_208/2020
 C241T A1163T C3037T T9016C C14408T A16275G A23403G T26726A GGG28881AAC

EPI_ISL_484689
 2020-06-28 2020-07-08
 United Kingdom hCoV-19/Wales/PHWC-165615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_484939 MT750143
 2020-06-28 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484941 MT750145
 2020-06-28 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484974 MT750177
 2020-06-28 2020-07-08
 United States SARS-CoV-2/human/USA/WI-UW-599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C A1982G C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_484977
 2020-06-28 2020-07-08
 United States hCoV-19/USA/WI-UW-602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C -10387T C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_489930
 2020-06-28 2020-07-14
 United States hCoV-19/USA/WI-GMF-08324/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490703
 2020-06-28 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR3939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491111
 2020-06-28 2020-06-28
 Germany hCoV-19/Germany/Tv4-20-Tier-4/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C12747T A23064C A23403G A29869T A29874T A29878T A29882T AAAAAAAAAAAAAAA29889-

EPI_ISL_491112
 2020-06-28 2020-06-28
 Germany hCoV-19/Germany/Muc_IMB1/2020
 A1GGATCGAAAGTTGA C241T C3037T A23403G AAAAAAAAAAAAAAA29889-

EPI_ISL_491305 MT772448
 2020-06-28 2020-07-16
 United States SARS-CoV-2/human/USA/FL-UW-671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491309 MT772416
 2020-06-28 2020-07-16
 United States SARS-CoV-2/human/USA/IL-UW-639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491313 MT772467
 2020-06-28 2020-07-16
 United States SARS-CoV-2/human/USA/IL-UW-690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491320 MT772418
 2020-06-28 2020-07-16
 United States SARS-CoV-2/human/USA/NY-UW-641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491323 MT772405
 2020-06-28 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T ATG1605- C3037T C10319T C14408T G19398T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491325 MT772408
 2020-06-28 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491326 MT772409
 2020-06-28 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491327 MT772411
 2020-06-28 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T G18985T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491332 MT772417
 2020-06-28 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C A5553G C7823T C11074T C14408T G15191T G21438T A23403G C25710T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491346 MT772436
 2020-06-28 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T G18985T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491352 MT772444
 2020-06-28 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5310T C12294T C14408T A23403G C25511T G25563T CGGAGT29743- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491362 MT772458
 2020-06-28 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491368 MT772465
 2020-06-28 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491369 MT772466
 2020-06-28 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499436
 2020-06-28 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169392/2020
 ATTA1- C241T A489G A681G C3037T T5465C G6387A C14408T G21624T A23403G G24102A AA25800TT G28328A GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_499781
 2020-06-28 2020-07-28
 United Kingdom hCoV-19/England/NORT-293668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501113
 2020-06-28 2020-07-30
 United States hCoV-19/USA/WA-UW-12612/2020
 ATTAAAGGTTTATA1- TCCC18GGSM AAC34TTT C241T C1059T T1927C C3037T C10319T C14408T G17193T A18424G C21304T C21727T A22255T A23403G G25563T G25907T C27964T C28472T C28869T C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_512566 MT893679
 2020-06-28 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0761/2020
 ATTAA1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_512567 MT893680
 2020-06-28 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0762/2020
 AT1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_512568 MT893681
 2020-06-28 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0763/2020
 ATT1- C241T C2416T C3037T C14408T C16616T A19865G A23403G G25563T C26885T C27603T C28770T C28887T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_512570 MT893683
 2020-06-28 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0765/2020
 ATTA1- C241T C815T C3037T C3411T T10795C C14408T C18452T A22422G A23403G T24945C G25437T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_512571 MT893684
 2020-06-28 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_513278
 2020-06-28 2020-08-12
 United States hCoV-19/USA/FL-ADPH/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T G3728T A8590G C14408T G18186T G20102T G20397T C22564T A23403G G25563T C25777T C29614T G29734C AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_513279
 2020-06-28 2020-08-12
 United States hCoV-19/USA/FL-ADPJ/2020
 ATTAAAGGTTTATACCTTC1- AGG22- C241T C673T C3037T T4125C C14408T G14638T A23403G C23812T GGG28881AAC G29711T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_513280
 2020-06-28 2020-08-12
 United States hCoV-19/USA/FL-AF28/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2416T C3037T CAGTCAGCTGATGCACAATCGTTTTTAAACGGGTTTGCGGTGTAAGTGCAGCCCGTCTTACACCGTGCGGCAC13439- C14408T C16616T A23403G G25563T C26885T C27603T C28887T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_514202 MT890335
 2020-06-28 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C815T C3037T C3411T T10795C C14408T G16245A C18452T A23403G G25437T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_514203 MT890336
 2020-06-28 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0857/2020
 ATTAAAGG1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_514627 MT892974
 2020-06-28 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1408/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_514989
 2020-06-28 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2586/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T C29370T G29779T ACAAAAAAAAAAAAAA29869-

EPI_ISL_514990
 2020-06-28 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2587/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T T28912C G29179T C29370T G29779T AGGAGAA29860-

EPI_ISL_514993
 2020-06-28 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2590/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T GAGA29862- G29868A

EPI_ISL_514994
 2020-06-28 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2591/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_516906
 2020-06-28 2020-08-24
 Israel hCoV-19/Israel/CVL1198/2020
 AT1- C241T C313T G839T T911C C1528T C2836T G2965C C3037T G4510A T5653C C8389T T8838C C8905T G10900T T11084C C14408T G15438T C15738T T16993C G18651T A23125T A23403G G23628T G25617T G25785T G26709T T27221A G28851T GGG28881AAC

EPI_ISL_520749 MT972437
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3036/2020
 ATTAAAGGTTTATACCT1- C241T C3037T A6721T C14408T G19816T G21624C A23063T A23403G C26984T C27509T T28196C GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520909 MT972496
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521483 MT972338
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2637/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521486 MT972341
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2640/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G23593T GGG28881AAC

EPI_ISL_521488 MT972343
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521491 MT972346
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13424A C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521493 MT972348
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_521714 MT969618
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2883/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521998 MT969418
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18267T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522015 MT969437
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522093 MT972224
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522094 MT972225
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7334T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522098 MT972228
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2378/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C28629T GGG28881AAC

EPI_ISL_522126 MT972305
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522127 MT972306
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522139 MT972295
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2430/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522140 MT972296
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522142 MT972298
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2433/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_522157 MT972255
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2451/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G AG28877TC GGG28881AAC

EPI_ISL_522158 MT972256
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2452/2020
 ATTAAA1- C241T A1163T C3037T A5353G T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G A28624G GGG28881AAC

EPI_ISL_522171 MT972269
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26262A GGG28881AAC C28961T

EPI_ISL_522172 MT972270
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G23608T GGG28881AAC C28961T

EPI_ISL_522173 MT972271
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2470/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522174 MT972272
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522178 MT972276
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2475/2020
 ATTAAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522179 MT972277
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2476/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522180 MT972278
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522182 MT972280
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522183 MT972281
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C203T C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522184 MT972282
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522185 MT972283
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15546T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522186 MT972284
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522187 MT972285
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18267T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522197 MT969493
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522201 MT969498
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522230 MT969530
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522233 MT972310
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522243 MT969496
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522244 MT969497
 2020-06-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2560/2020
 ATTAAAGGTTTATACC1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_523533
 2020-06-28 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21621T A23403G G28090T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523598
 2020-06-28 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29543C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523632
 2020-06-28 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T G17278T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523633
 2020-06-28 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29543C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525913
 2020-06-28 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15024T C16260T C20429A A23403G G25563T C28821A

EPI_ISL_528747
 2020-06-28 2020-09-09
 Indonesia hCoV-19/Indonesia/JB-TFRIC19-R30535/2020
 ATTAAA1- C241T A2031R C3037T A4228W C5806T C14408T G19549T A23403G C28253Y GGG28881AAC

EPI_ISL_533237
 2020-06-28 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-5FFF8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1514T G2095T C2416T C3037T G8371T G11083T C14408T T18119G C22477T A23403G G25563T C25672T A25983G G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533245
 2020-06-28 2020-09-11
 United Kingdom hCoV-19/England/QEUH-5FFCCF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C4158T C9811T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539547
 2020-06-28 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2013595/2020
 C241T C683T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T

EPI_ISL_539896
 2020-06-28 2020-09-21
 United Kingdom hCoV-19/England/BRIS-13355F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7043Y G11447A C14408T G18105T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546052
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2324A A2969G C3037T T5290C C6541T C13274T C14408T G19816T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546372
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G A29089G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546373
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C A11991G C14408T C17639T A23403G C24026T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546379
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C355T C1059T C3037T A10323G G12793T C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546384
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C11651T C14408T C14676T G16935T A23403G T24211C G25647T G25690T A27259T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546390
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1820A C3037T A3297G C14408T G15452T G17151T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546397
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T C26611T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546400
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C367T C1059T C3037T G4162T C9163A C9430T C10188T G11083T C14408T C16694T A23403G T24982C G25563T G27390C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546406
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546409
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8320T C9857T C14408T C16289T C16887T C22311T C23191T A23403G G25563T A29396C G29440A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546414
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T C16247T T16425G C17639T A23403G G25563T T25689A C26256T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546423
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2086T C3037T C10319T G11113T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546425
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C853T C1059T C3037T A10323G C12897T C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546426
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T T27656C C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546437
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6052A C10319T C14408T G19872T A23403G G25563T G25855T C27964T G29254T G29474T G29764T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546438
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T C28093T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546440
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T G22346T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546444
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A385T C958T C1059T G1526T C3037T C14408T C23170T A23403G G23587T G25456T G25563T C27964T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546447
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T T17751G A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T T29760C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546448
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1549T C3037T C10319T C11031T C14408T A18424G C21304T A23403G G25009A G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546450
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G C23481T C27575T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546451
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546454
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T A2475G C3037T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T T28255C C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546463
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T A3569G C14408T C16017T A16514G C19019T G19417T A20055G A23403G C24718A T27212C G27561T C29421T C29509T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546464
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546465
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546468
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C2044T C3037T C3045T C3737T C6633T G9010A C14408T A23403G C27092T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546469
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3514T G4162T C9163A C9430T C10188T C14408T C16694T A23403G T24982C G25563T G27390C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546475
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2618G C3037T C3737T A4899G G10642T G11146T C13774T C14408T C15540T A15645G C20474T A23403G GGG28881AAC G29081T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546476
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546477
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T G16935T A23403G G25563T G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546478
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T G2914A C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546479
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A4558G C14408T C16260T A23403G G25563T G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546480
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5310T G7042T C10458T C11396A C11916T T13794C C14178A C14408T C18998T A23403G A23947G G25563T C26469G G26828T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546482
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546483
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T C18322T G19648A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546484
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G A29089G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546486
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4048A C4777T G9479T C9502T T11587C C14408T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546487
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11464A C14408T A17153G A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546488
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T25622C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546490
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546494
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12756T C14408T C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546498
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T T11134C C14408T A18535G C19011T A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546499
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T2572C C3037T C10188T G11083T C14408T C17550T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546500
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3177T C9907T C14408T C17125T T18144C C23191T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546502
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3583T C14408T C16260T A23403G G25563T G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546503
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1812T C3037T G6052A C10319T C14408T G19872T A23403G G25563T G25855T C27964T G28077T G29254T G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546504
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C6385G G11464A C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546505
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T C18705T A23403G G23900C C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546506
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10626T C14408T C17639T A23403G G24977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546507
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6421T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546512
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T G5953A T9742C C10626T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546515
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2118A C3037T G3871T T3931C C4965A C14408T A23403G A27759G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546517
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C11824T C14408T A23403G G25563T C28890T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546518
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T T19284C C21622T A23403G C24718A T27212C G27561T C27600T A28513T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546519
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C335T C3037T C14408T C16017T A23403G C24718A T27212C G27561T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546571
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-7175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T C9714T C14408T T16425G C23277T A23403G A25104G G25563T G28908T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547013
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-5786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2086T C3037T C10319T G11113T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547014
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-5787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4486A A10317G C10319T C14408T G20578T A23403G G25563T G25855T C27945T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547029
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-5807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T A5368G C13487T C14408T C16192T C16260T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547076
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-5870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T A5368G C13487T C14408T C16192T C16260T C21707T A23403G C23557T C25267T T25365C G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547104
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-5912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T C10319T C14408T C17125T T23398C A23403G G25563T G25641T C27964T C28849T C29762T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547135
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-5972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1238T T1936C C3037T C6494T C13487T C14408T C16260T T20331C C21707T A23403G C23557T C25231T G25563T G26690T G27214T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547166
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T C1059T C1420T C3037T C6402T C10319T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547170
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547184
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C1329A C3037T C3874T C8407T C14408T A23403G GGG28881AAC C29445T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547347
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C A5431G C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547363
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T A3569G C14408T C16017T A16514G C19019T G19417T A20055G A23403G C24718A T27212C G27561T C29421T C29509T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547380
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1813A T1936C C3037T C10319T C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C28821A G29543T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547405
 2020-06-28 2020-09-24
 United States hCoV-19/USA/TX-HMH-6346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G248T C335T C1059T T2330G C3037T C9120T A12197C C14408T T16425G C22450T A23403G G25563T T27384C T28245G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549265 MW040693
 2020-06-28 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T T1536C C3037T C5812T C14408T T18876C A23403G C23506T C24748T C25469T G25563T C29733T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549266 MW040694
 2020-06-28 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549267 MW040695
 2020-06-28 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T C16616T A23403G A25201G G25563T C26885T C27603T C28887T C29774T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_557009
 2020-06-28 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B9D16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C2062T A2810G C3037T C6395T A10317G A12410G C14408T C16323T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557029
 2020-06-28 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B9CFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C8964T G10097A C13536T C14408T C21855T A23403G C23731T G26063T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557036
 2020-06-28 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D452C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C4002T G10097A G11083T G11634T C13536T C14408T C21691T C22716T A23403G C23731T C27970T GGG28881AAC C28909T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557041
 2020-06-28 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B9F4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7029T A9339G C14408T C17766T T19791Y C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557122
 2020-06-28 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8BA0A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7029T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557138
 2020-06-28 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B9FD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G26063T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557165
 2020-06-28 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B9E6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C2062T A2810G C3037T C6395T A10317G A12410G C14408T C16323T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557579
 2020-06-28 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7215D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2508T C3037T C4084T C8208T C13430T C14408T G21724T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564284
 2020-06-28 2020-09-30
 Australia hCoV-19/Australia/VIC7209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T A21944R G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_477247
 2020-06-29 2020-06-29
 India hCoV-19/India/InStem_NCBS_0047/2020
 A1T T3C A5G G7C T10G ATA12GCT C16T -18CCGATC C6310A C6312A G11083T C13730T T19452C TGTATAA19456- C19470G A19472G T19475C GT19478AC -19481T G19486A C19524T G22592T C23929T T24706C C28311T

EPI_ISL_477254
 2020-06-29 2020-06-29
 India hCoV-19/India/InStem_NCBS_0054/2020
 A1T T3C A5G G7C T10G ATA12GCT C16T -18CCGA C20T C241T C2836T C3037T A3097G C5672T C14408T C18877T C22444T A23403G G25563T C26735T C28854T A29878G AA29883GG AA29886TT AA29890TC

EPI_ISL_489960 LR861491
 2020-06-29 2020-07-14
 Switzerland 180003
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T469Y C591M G1533S C3037T T3144K T3771Y G4216S A5563R T8482Y C9402Y T9927K T9976Y T10076W G10265R C10527Y C14408T C15324Y C15720T A15972G A16965R C17403Y C17414Y C17747Y C18395Y C18421Y A18818M C19718T G20069S A22904W A22941M A22956W C23248Y A23403G C24174M C24509Y C24795T C25349Y C25413Y A25512M C25568Y C25571M A26179W G26700T C27352M G27933R T28759C GGG28881AAC C29218Y C29774Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489961 LR861485
 2020-06-29 2020-07-14
 Switzerland 180004
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A3084R C4002T G5950K T6923Y C6982M G10097R C13536T C14408T T17675Y G19732T A23403G C23731T G23868C C24082Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489962 LR861496
 2020-06-29 2020-07-14
 Switzerland 180005
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G5950K T6991K C7008M C7011M G10097R C13536T C14408T G19732T A23403G C23731T G23868C C24082Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489963 LR861670
 2020-06-29 2020-07-14
 Switzerland 180007
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C635Y G1590R C3037T G3606K T3658Y A5331R T5349Y T5380Y T5393Y A5536R G5561S T7020Y T10076W C11471T C12789Y C14408T T17675Y C19524T G22205C A23403G G24193S C25731T GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489964 LR861689
 2020-06-29 2020-07-14
 Switzerland 180008
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C300T C3037T T3169C C6267Y C7765T T9961C G10265A G10396T G12052T C14408T A15972G C16178T T17675Y G19648T C19718T C20178Y A23403G A25492G T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489966 LR861675
 2020-06-29 2020-07-14
 Switzerland 180018
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2905W A3003R C3037T C4002T A5391W A5563R G5950K T7035W T9865Y G10097R A10312W C13536T C14408T G19732T A23122M A23403G C23731T C24082Y C25702Y C27881T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489967 LR861677
 2020-06-29 2020-07-14
 Switzerland 180019
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G1590R C3037T C8819Y C11471T C12789Y C14408T C19524T G22205C A23403G C25731T GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489968 LR861484
 2020-06-29 2020-07-14
 Switzerland 180020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313Y G1590R T2998Y CT3037TW T3144K G4016R C4543Y CA4980YW C5079M A5563R T7018Y T7305K T8063W T8391Y T9919Y T9927Y T10076W C11471T C12789Y T12997Y C13072Y G13074K T13518Y C14408T C19524T T20613K A21067R C21815Y G22205C A23403G G24124K C24627Y C25731T T26498Y GGG28881AAC G29175R G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489970 LR861494
 2020-06-29 2020-07-14
 Switzerland 180023
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2433A C3037T T3144K TT5327KK T5338K C5340M CT5343MK C5370M CT5376MK T5386K G5515R A5563W G6566T G10265A C14408T G15327T A15972G C17678Y A17864G C18117T C19718T G22918R A23122M A23403G C23707T T28759Y GGG28881AAC C29167T G29422T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489971 LR861490
 2020-06-29 2020-07-14
 Switzerland 180024
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C635Y T2911Y T2981Y A3019W C3037T C3096Y T3144W C4002T G5950K G10097R C13536T C14408T G19732T A23122M A23403G C23731T C24082Y C28253Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489983 LR861687
 2020-06-29 2020-07-14
 Switzerland 180047
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3177A C4002T T4917C G5950K G10097R C13536T C14408T C14670T G19732T A20461G A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489984 LR861486
 2020-06-29 2020-07-14
 Switzerland 180049
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C609Y C3037T T3144K A5522R A5552R C6633T T6962Y T6972W C10833T G13459T C14408T C15324T C15600T A21137G G22933K C23053Y T23062C A23122M A23403G C27804T C27855M A28081M G28747T G28917T G29543T G29745T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489985 LR861674
 2020-06-29 2020-07-14
 Switzerland 180051
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C6633T C10833T G13459T C14408T C15324T C15600T A21137G T23062C A23403G C27804Y G28747T G28917T G29543T G29745T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_490398
 2020-06-29 2020-07-15
 United Kingdom hCoV-19/England/LIVE-A3F4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C A12121T C12763T C14408T G21624T A23403G G27877T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491304 MT772510
 2020-06-29 2020-07-16
 United States SARS-CoV-2/human/USA/CO-UW-739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491314 MT772483
 2020-06-29 2020-07-16
 United States SARS-CoV-2/human/USA/IL-UW-707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491373 MT772471
 2020-06-29 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9120T C14408T A19899T A21464G A23403G G25444A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491376 MT772474
 2020-06-29 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491377 MT772475
 2020-06-29 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A6465C A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491384 MT772482
 2020-06-29 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2003T C3037T C5310T C12294T C14408T T22825C A23403G C25511T G25563T CGGAGT29743- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491386 MT772485
 2020-06-29 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G23501T G25563T G28881T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491387 MT772487
 2020-06-29 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G A24694C G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491389 MT772489
 2020-06-29 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6627T C11379T C12921T C14408T T15354C C18877T A21852C A23403G G25563T C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491390 MT772490
 2020-06-29 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2549A C3037T G4288A C10815T C14408T C14599T G15732T T19143C G19657A A20268G A23403G C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491391 MT772491
 2020-06-29 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491394 MT772494
 2020-06-29 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491395 MT772495
 2020-06-29 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491417 MT772515
 2020-06-29 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493373
 2020-06-29 2020-07-21
 Norway hCoV-19/Norway/2808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3122T C14408T A16734G A20268G A23403G G24794T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493375
 2020-06-29 2020-07-21
 Norway hCoV-19/Norway/2810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3122T C14408T A16734G A20268G A23403G G24794T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493376
 2020-06-29 2020-07-21
 Norway hCoV-19/Norway/2811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C3037T C6402T C14408T A16734G A20268G T22207C A23403G G24794T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493377
 2020-06-29 2020-07-21
 Norway hCoV-19/Norway/2812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3122T C14408T A16734G A23403G G24794T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493378
 2020-06-29 2020-07-21
 Norway hCoV-19/Norway/2813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6402T C14408T A16734G A20268G T22207C A23403G G24794T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493387
 2020-06-29 2020-07-21
 Norway hCoV-19/Norway/2834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6402T C14408T A16734G A20268G A23403G G24794T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499439
 2020-06-29 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1693ED/2020
 ATTAAAGGTTTATAC1- C241T C2638T C3037T C8597T G11083T C14408T C20132T A23403G GGG28881AAC G29825A

EPI_ISL_499810
 2020-06-29 2020-07-28
 United Kingdom hCoV-19/England/LCST-24D735A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1874T C3037T C8683T G11083T C14408T G19894A G21624T A23403G C28093T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499979
 2020-06-29 2020-07-28
 United Kingdom hCoV-19/England/LCST-24D732D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14322T C14408T A23403G C25669T GGG28881AAC A29222C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499980
 2020-06-29 2020-07-28
 United Kingdom hCoV-19/England/LCST-24D733C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2983T C3037T C7834T A12564G C14408T C16997T A23403G G25429T C26873T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499981
 2020-06-29 2020-07-28
 United Kingdom hCoV-19/England/LCST-24D734B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1103T C3037T C14408T C16308T A20268G C22482T A23403G A27156G G28357T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500776
 2020-06-29 2020-07-29
 Norway hCoV-19/Norway/2853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C241T C3037T G3774A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500777
 2020-06-29 2020-07-29
 Norway hCoV-19/Norway/2854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C241T C3037T G3774A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501114
 2020-06-29 2020-07-30
 United States hCoV-19/USA/WA-UW-12689/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A31T AAC34TTT C241T C1059T T1927C C3037T C10319T C14408T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T -29904AAAAAAAAAAAAAAAA

EPI_ISL_501115
 2020-06-29 2020-07-30
 United States hCoV-19/USA/WA-UW-12705/2020
 ATTAAAGGTTTATAC1- AAC34TTT C241T C1059T C3037T C6027T C10335T C14408T A23403G G25563T C25925T A27253G G27390T C27804T T28861G

EPI_ISL_501116
 2020-06-29 2020-07-30
 United States hCoV-19/USA/WA-UW-12706/2020
 ATTAAAGGTTTATA1- C36T C241T G932C C1059T G2755T C3037T C3602T C6445T C14408T C16762T A23403G G25563T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501117
 2020-06-29 2020-07-30
 United States hCoV-19/USA/WA-UW-12727/2020
 ATTAAA1- A31H AAC34TTT C241T C313T C3037T A13581G C14408T A23403G C25321T G28747T GGG28881AAC G29734T

EPI_ISL_501123
 2020-06-29 2020-07-30
 United States hCoV-19/USA/WA-UW-13233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- AAC34TTT C241T C3037T AGG13512TTA C13994T TA14222GC C14408T C15933T G16968T T19839C A20055G C21859T A23403G G25691T GGG28881AAC C29784T G29862A G29864A TG29867AA C29870A

EPI_ISL_501127
 2020-06-29 2020-07-30
 United States hCoV-19/USA/WA-UW-13268/2020
 ATTAAAGGTTTATAC1- C36T C241T C3037T C13994T C14408T C18486T A20268G T22162C A23403G C28854T G29862A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_508175
 2020-06-29 2020-08-04
 India hCoV-19/India/AR28/2020
 ATTAAAGG1- C241T T1947C A2045T G2639A C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T G29868A

EPI_ISL_510524
 2020-06-29 2020-08-06
 United States hCoV-19/USA/WI-UW-717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TAAAGTCATT684- A696C C3037T G3871T T3931C C4226T C5672T A7837C C12525T C14408T A23403G C26151T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512572 MT893685
 2020-06-29 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0767/2020
 AT1- C241T C1059T C2110T C3037T C6582T C11173T C14408T C16260T C20429T A23403G G25563T C26028T T28029C A28401G C28821A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_512575 MT893688
 2020-06-29 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C14408T T22843C A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_512578 MT893692
 2020-06-29 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0774/2020
 A1- C241T C1059T C1385T G1738T C3037T G3242A C7318T C11916T C14408T A23403G G25563T C28087T C29686T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_513281
 2020-06-29 2020-08-12
 United States hCoV-19/USA/FL-AFFD/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A187G C241T C3037T C14408T C16017T T19284C A23403G C24502T C24718A C26256T T27212C G27561T C27600T C29421T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_513282
 2020-06-29 2020-08-12
 United States hCoV-19/USA/FL-AFFG/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- A187G C241T C3037T C14408T C16017T T19284C A23403G C24502T C24718A C26256T T27212C G27561T C27600T C29421T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_513283
 2020-06-29 2020-08-12
 United States hCoV-19/USA/FL-AFFK/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C10319T C14408T G16912T A23403G G25563T C27945T C27964T A28995T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_513284
 2020-06-29 2020-08-12
 United States hCoV-19/USA/FL-AFQQ/2020
 A1T TAAAGG3GTGCTT C241T C1059T C3037T C3117T C5467T C14408T G21907A A23403G G25563T C25777T C29614T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_513292
 2020-06-29 2020-08-12
 United States hCoV-19/USA/PR-AGN5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T G18984A C19011T A22285G A23403G C26807T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_514204 MT890337
 2020-06-29 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0858/2020
 ATTAAAGGTT1- C241T C1059T C1385T G1738T C3037T G3242A C7318T C11916T C14408T A23403G G25563T C28087T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_514205 MT890338
 2020-06-29 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0859/2020
 ATTA1- C241T C1059T C1191T C3037T A6035G T6435C C10319T C11650T C14408T G17014T A23403G G25563T C27964T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_514207 MT890340
 2020-06-29 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G210T C241T T833C C1059T C3037T G3692T C14408T G15438T C16954T C19185T A20142G A23403G G25563T G25906T C27964T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_514628 MT892975
 2020-06-29 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C16260T A23403G G23900C A24253T G25563T C28821A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514991
 2020-06-29 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2588/2020
 A1- A4G C241T C3037T A4297G A4762G A5040G T8158C C14408T C21642T A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_514992
 2020-06-29 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- C241T G680A T2698C C3037T C10156T G14118T C14408T A15008G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516901
 2020-06-29 2020-08-24
 Israel hCoV-19/Israel/CVL1060/2020
 A1- C241T C313T C1758T C3037T G4510A T8854C C14408T G15438T A23403G G25785T GGG28881AAC G29260T

EPI_ISL_516902
 2020-06-29 2020-08-24
 Israel hCoV-19/Israel/CVL1130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C66A C241T T514C C1059T C3037T C7768T A8773G C10726A C11916T C14408T C17304T C18998T A23403G T24805C G25563T G25726T G29540A A29866G

EPI_ISL_516903
 2020-06-29 2020-08-24
 Israel hCoV-19/Israel/CVL1133/2020
 C241T C1059T C3037T G7295T C8639A G11083T C14408T T22150C A23403G G23678T G25523T G25563T C27297T G28346T G28917T

EPI_ISL_516905
 2020-06-29 2020-08-24
 Israel hCoV-19/Israel/CVL1196/2020
 C241T C313T C1758T C3037T G4510A C14408T G15438T A23403G G25785T GGG28881AAC G29260T

EPI_ISL_518052
 2020-06-29 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002474/2020
 AT1- C241T C722A C3037T A7064G C14408T C19524T C22675T C23191T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_520618 MT970281
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520619 MT970282
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C12784T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520875 MT972462
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3188/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_520905 MT972492
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3220/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520910 MT972497
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3227/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520911 MT972498
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3228/2020
 A1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520913 MT972500
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521467 MT972322
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521481 MT972336
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521487 MT972342
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521492 MT972347
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521508 MT972363
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2664/2020
 ATTAAAG1- T10A C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521520 MT972374
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521521 MT972375
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521522 MT972376
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2681/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521523 MT972377
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521524 MT972378
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521711 MT969615
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521713 MT969617
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2882/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521855
 2020-06-29 2020-08-25
 Australia hCoV-19/Australia/VIC3026/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18555T G22992A G23401A A23403G TTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAG27554- GGG28881AAC

EPI_ISL_522014 MT969432
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522054 MT969476
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522105 MT972235
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- T19065C T22303G G26144T CGATCGAGTG29750-

EPI_ISL_522106 MT972236
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C882T C3037T C6990T C8980T C14408T T16242A C18877T C21575T A23403G G25563T C25710T G25971T C26735T

EPI_ISL_522108 MT972238
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4160T C14408T C18877T TAT22189- C22444T A23403G C25452T G25563T C26735T C27143T G27621T G28703T C28854T

EPI_ISL_522109 MT972239
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T G8371T C9491T G11083T C11455T C14408T C21997T C22477T A23403G G25563T

EPI_ISL_522111 MT969415
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C8247T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522118 MT969482
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522124 MT972303
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C C26936T GGG28881AAC

EPI_ISL_522125 MT972304
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522128 MT972307
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2417/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522129 MT972308
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2418/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522181 MT972279
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2478/2020
 AT1- C241T A543C A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522188 MT969484
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522192 MT969488
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522203 MT969500
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_522204 MT969501
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522205 MT969502
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2510/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_522206 MT969503
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2511/2020
 ATTAAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522207 MT969504
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522208 MT969505
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G14547T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522209 MT969506
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522212 MT969509
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2517/2020
 ATTAAAGGTTTATACCTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522213 MT969510
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2518/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C28732T GGG28881AAC

EPI_ISL_522214 MT969511
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522217 MT969514
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522231 MT969531
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2538/2020
 ATTA1- C241T A1163T C3037T T7540C C12784T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522234 MT972311
 2020-06-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2547/2020
 ATTA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_523634
 2020-06-29 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C C28603T G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523679
 2020-06-29 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525703
 2020-06-29 2020-09-01
 United States hCoV-19/USA/WA-S2713/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_525704
 2020-06-29 2020-09-01
 United States hCoV-19/USA/WA-S2714/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T T1927C C3037T C10319T C14408T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525705
 2020-06-29 2020-09-01
 United States hCoV-19/USA/WA-S2715/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T T1927C C3037T C10319T C14408T A18424G G19999T C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525914
 2020-06-29 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C1059T C3037T G5008T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T

EPI_ISL_525915
 2020-06-29 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1603G C3037T C11916T C14362T C14408T A20935G A23403G C25466T G25563T G28027T C29144T G29742T

EPI_ISL_525916
 2020-06-29 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10793T C14408T C18877T A23403G A25076G G25563T G25660C C26192T G27613A

EPI_ISL_525918
 2020-06-29 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10793T C14408T C18877T A23403G A25076G G25563T G25660C C26192T G27613A

EPI_ISL_525920
 2020-06-29 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T C29274A

EPI_ISL_526880
 2020-06-29 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T6294C C8664A G8851A T12383C C14408T A23403G C25350T A25505C C26521T GGG28881AAC G29427T A29865G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_527025
 2020-06-29 2020-09-03
 Australia hCoV-19/Australia/NSW2496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2700T C3037T A3569G C4965T A8072G G13812T C14408T A16011G A21213G C23114T A23403G GGG28881AAC C29149T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527026
 2020-06-29 2020-09-03
 Australia hCoV-19/Australia/NSW2497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1223T T1813C C3037T A10378G G12345A C13721T G13858C C14408T G21295T A23403G G24095T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527741
 2020-06-29 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0073/2020
 AT1- A4T C241T C3037T C5884T G8572T C10340T G10360A C14408T A23403G C24912T C28706T GGG28881AAC C29144T A29873G AA29875CT AAAA29882TGTT A29887C A29892G AAAAAAAAA29895-

EPI_ISL_527743
 2020-06-29 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0075/2020
 ATTAAAGGTTTATACC1- C241T C3037T C5884T G8572T C10340T G10360A C14408T A23403G C24912T C28706T GGG28881AAC C29144T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527744
 2020-06-29 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C5884T G8572T C10340T G10360A C14408T A23403G C24912T C28706T GGG28881AAC C29144T T29867A ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869G

EPI_ISL_539541
 2020-06-29 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2013585/2020
 C96T C241T C3037T C4230A C5178T A11923C G12761A G12769T C14408T C16375T A20268G A23403G A23870G

EPI_ISL_539542
 2020-06-29 2020-09-18
 Spain hCoV-19/Spain/CT-ISCIII-2013586/2020
 C96T C241T C3037T C4230A C5178T A11923C G12761A G12769T C14408T C16375T A20268G A23403G A23870G

EPI_ISL_541003
 2020-06-29 2020-09-22
 South korea hCoV-19/South Korea/IHC18094/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_544534
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T G3433A T12139C G12817A C13487T C14408T C16260T C21707T A23403G C23557T T24028C G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544552
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C703T C1059T G2086T C3037T C10319T G11113T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544558
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544561
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T G3433A C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C27679T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544575
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T G19117T A23403G T27233C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544684
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C T7648C C14408T T16425G C17639T G18985T C20483T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544698
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5840C C14408T G14831T C16260T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544707
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544721
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A C15324T A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544727
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G124A C241T C1059T C3037T C4276T G5690A C14408T C23191T A23403G C23655T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544741
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T G28851A C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544759
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1684T C3037T C3397T A3580G C10755T C14408T C15952T C16260T C18129T A23403G G25563T C26110T C28453T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544772
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C13252T G13618T C14408T C20474T A23403G GGG28881AAC C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544798
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1495T C3037T T7332C T7831A C14408T C16376T A23403G G25563T C27498T G28362C G28845T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544806
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544807
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C14408T C15763T A23403G G25563T C27964T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544822
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T G14923A T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_544936
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1545T C1884T C3037T G11083T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545695
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T C24130T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545697
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545737
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545739
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C4931A G7675T G9479T C14408T C17119A C18508T C23191T A23403G G25563T G28851A C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545745
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T A2475G C3037T C4534T C5129T G12382A C14408T C16017T A23403G C24718A C26606T T27212C G27561T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545748
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T G5564A C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545751
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545757
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C17104T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29425A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545759
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T T7651C C9521A C14408T A20268G G20853T A23403G G24197T C24370T C24904T C28854T G29422T A29567G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545760
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1238T T1936C C3037T C13487T C14408T C16260T T20331C C21707T A23403G C23557T G25563T G26690T G27214T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545778
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5567A C5806T C6582T A13278G C14408T C20474T A23403G C26270T A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545832
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-8067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11758T C14408T C16260T A23403G C23625T G25563T C27294T G27955A C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546385
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-6958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C180T C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G T28053C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546392
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-6965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6843T C10319T C14408T G16014A T17353C C23315T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546466
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G C26195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546509
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C1912T C3037T G7798T T11134C C14408T C19011T A23403G G25785T G25819A C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546510
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C1912T C3037T G7798T T11134C C14408T C19011T A23403G G25785T G25819A C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546522
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A81G C241T C1059T C3037T A10323G C14408T T15276A A23403G G24794T G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546524
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T C16611T A23403G C24718A C26606T T27212C G27561T C27600T C29421T C29762T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546525
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6664T C9967T G10902A T10906C C14408T C18687T A23403G G25563T C26464T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546526
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546527
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1545T C1884T C3037T C14408T G20060T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546529
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T T1159C C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546531
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546538
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A22107G A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546541
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C1059T C3037T C14408T G15438T A18818G A23403G G25494T G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546547
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C11575T C14408T C17403T A18468C C19032T A20262G G21305A A23403G G25563T C27964T C28868T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546556
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6664T C9967T G10902A T10906C C14408T C18687T A23403G G25563T C26464T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546557
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546563
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5023T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546564
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C1912T C3037T G7798T T11134C C14408T C19011T A23403G G25785T G25819A C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546566
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C1912T C3037T G7798T T11134C C14408T C19011T A23403G G25785T G25819A C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546569
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1890A C3037T C7086T C11671T C14408T C18804T C20474T A23403G C25708T G27074T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546570
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C556T C1059T T1623C C3037T C5140T C10030T C10319T C13446T C14408T C16694T A23403G G25563T G27459T C27689T C27964T C28892T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546574
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1836T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546581
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T G22346T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546585
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G11464A C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546586
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C1912T C3037T G7798T T11134C C14408T C19011T A23403G G25785T G25819A C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546594
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A A2568G C3037T T9742C C14408T C17639T C21871T A23403G T26424A C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546598
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G T13273C C14408T T15276A A23403G G25563T C27297T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546599
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546604
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T C19019T A23403G T29233A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546607
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2467G C3037T G8105T C8123T G11083T C14408T A14955G A23403G G24812T C24919T G28237T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546610
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6843T C10319T C14408T G16014A T17353C C23315T A23403G G25563T G25641T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546612
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A T10906C C14408T C18687T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546613
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2005T C3037T G4162T C8660T C9163A C9430T C10188T C14408T C16694T A23403G T24982C G25563T G27390C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546614
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T T1183A C3037T T5290C C14408T T16425G C17639T A23403G G25563T T25689A C26455T C27847T G29372A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546615
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2324A A2969G C3037T C13274T C14408T C17104T G19816T A23403G G25563T G26113T G26389T G26660T C27964T G28968T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546617
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2751T C3037T C7528T C14408T A18751G A23403G G25563T C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546619
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T G15761A C17639T G19816T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546621
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4321T C6384T C10449T C14408T C20474T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546623
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T C19320T A23403G G25563T T25689A C26455T G29372A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546624
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C12789A C14408T G14500T G16935T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546629
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T G14829T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546631
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G248T C335T C1059T C3037T C9120T A12197C C14408T C15720T T16425G G17019T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546632
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C17639T A23403G G25563T C25844T G25907T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546636
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T G11273T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546639
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T G11273T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546647
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C1912T C3037T G7798T T11134C C14408T C19011T A23403G G25785T G25819A C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546652
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A23403G C24378T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546653
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T C1469T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546657
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14676T A23403G G25647T T27722C C27828T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546659
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C3037T C14408T A23403G G24197T GGG28881AAC G29224T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546660
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1907C C3037T T8862C C10015T C14408T G14829T C15654T C23191T A23403G G25563T G26769T C28854T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546667
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C3037T C4084T C13667T C14408T G18412T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546669
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T C5284T C8357T C14408T T16425G C17639T A23403G G25563T C26455T G27226T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546670
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C10615T G12211A C14408T C17639T T20508C A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546671
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T T17751G A18424G T18669C C21304T A23403G G25563T G25907T C27964T C28472T C28869T T29760C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546672
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1124G C3037T C10319T C12789T C14408T A15564G A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29425A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546674
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A802C C1059T C3037T C13517T C14408T C19185T A23403G G25563T C27964T A28779G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546675
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C1912T C3037T G7798T T11134C C14408T C19011T A23403G G25785T G25819A C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546677
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1684T C3037T C14408T C15952T C16260T C18129T A23403G G25563T C26110T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546680
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A G20038T A23403G A25385G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546681
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A798G C1057T G2282A C3037T T9742C C14408T C17639T C23380A A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546683
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A23403G A23947G G25563T T26187C C26469G G26828T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546687
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5210T C10015T C10202T G11083T C14408T G14829T C20233T C23191T A23403G G25563T G26769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546689
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7756T C10188T C14408T G16377C C19763T A20232G A23403G T24982C G25563T C26804T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546691
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1710T G2324A A2969G C3037T C11173T C13274T C14408T C17104T A23403G G25563T C26204G G26389T G27463T T27866C C27964T A28210G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546692
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546700
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T C27389T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546702
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1280A C3037T T5840C C14408T C15810T C16260T G19684T A23403G G25563T C28821A C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546704
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1957A C3037T C14408T C16457T A23403G G25563T C28253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546706
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17172T C21812T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546707
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1420T C1912T C3037T G7798T T11134C C12295T C14408T C19011T A23403G G25785T G25819A C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546710
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C1567T C3037T C9521A C14408T A20268G G20383A A23403G C24904T C28854T G29081T G29422T A29567G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546711
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546712
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546713
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T C6031T T9742C C14408T C17639T C21614T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546714
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T G5148A C13957T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546718
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5806T C14408T C20474T A23403G A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546721
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A81G C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546722
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1907C C3037T C10015T C14408T G14829T C15654T C23191T A23403G G25563T G26769T C28854T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546723
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17010T C19011T C21057T A23403G C26151T T26442C C28585G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546729
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C1825A C3037T C6402T C9962T C10319T C10369T C14408T C21614T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546730
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C4931A G9479T C14408T C17119A C18508T C23191T A23403G G25563T A27674C G28851A C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546731
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546736
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546740
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546741
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T G11083T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546743
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-7404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A23403G A23947G G25563T T26187C C26469G G26828T C28087T G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546997
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C14396T C14408T C15251G C15763T A23403G G25563T C26340T C27964T G28302C C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547022
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A T10906C C14408T C18687T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547027
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C1962T C3037T C6402T C10319T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547034
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547062
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4931A C14408T T21988C G22216A C23191T A23403G G23873T T25547A G25563T G29449T G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547087
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-5886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13618T C14408T C20474T A23403G GGG28881AAC C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547333
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-6238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T C21638T A23403G T24212G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547395
 2020-06-29 2020-09-24
 United States hCoV-19/USA/TX-HMH-6331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6304G C14408T A23403G GGG28881AAC T28924C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549268 MW040696
 2020-06-29 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1486/2020
 ATTAAA1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_551569
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-90671B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C534T C854T C3037T G5716T T10453C C11195T G13714A C14408T G14428T A21860T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553299
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-921FD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G8353A C8950T G10097A C13536T C14408T C18693T G19009T A23403G C23731T G27632T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556985
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B8B1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C G6850T C12651T C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557015
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B42FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T C28332T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557018
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B7F9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19402T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557025
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B41B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557037
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B6A6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557038
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B8922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C9442T C14408T C19944T G23282T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557049
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B9903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T A23403G C24023Y G25699A C28807T GGG28881AAC G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557072
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B672A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C11003T T13417C C14408T A23403G C25896T G25963A GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557075
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B6283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557091
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B5D83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557098
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B6F9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T C27641T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557099
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B9842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557111
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B8CFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557113
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B7273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557121
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B48B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27604A C27641T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557133
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B5E35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557153
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8B65F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8650T A11854G C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557351
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-6FA9F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2395A C2638T C3037T C9442T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557354
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-745C22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16887T C21637T G22104T A23403G G25049T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557356
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FB8FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A C9024T G11083T C14408T G15906T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557361
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-74622F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5653C C14408T A22970G A23403G G27798T C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557373
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FBFF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A23403G G24755T C26029A C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557375
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-74CE52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2015G C3037T A6360G C9541T G11083T C14408T A23403G C24502A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557390
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FAD0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6633T G10265A T13794G C14408T C19862T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557395
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-7521AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C320T C1973T C3037T C3261T C4456T C5621T G9479T C14408T A20288C A23403G C25624T G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557398
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-745A82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T C3037T C12036T C14408T C16367Y C18744T A18978G A21706G A23403G G25563T A25592G C29197T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557399
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FCA6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G3638R G4180T T10453C C11195T C14408T G15380T G15444T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557404
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-744986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G C24384T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557405
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-74592B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706Y C3037T T5507W T7357Y G11083K C14408T C16163Y A20268R C21614T A23403G G23868K A28169G C28854Y GGG28881RRS C29625Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557408
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-74982A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557411
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-747C3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557417
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-745721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557419
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FD6B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557425
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-6FA6D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557433
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-745E77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G11083T C14408T G18651T A23403G C23731T C24378T T24763C G25757T C28093T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557439
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-749A24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G18433T A19650G T23113C A23403G G27281T G27841T A27938G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557440
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-748B8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557447
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-749505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7638A C8683T C13335T C14408T A20268G C22088T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557449
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7474FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T G10255T C14408T A23403G G27467T GGG28881AAC G29745T A29752T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557453
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FCAC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A G10105K C10615T G13920K C14408T C16470T G18859T G21624T A23403G C26571A GGG28881AAC C29215Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557454
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-746FBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C8208T C12747A C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557458
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-74D1B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1314T C2676T C3037T C4582T G8540A C12102T C14408T A19782T C21855T A23403G T25159C T26609C GGG28881AAC G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557466
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-6FA9EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T C22480T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557468
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FD7CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T G15906T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557469
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-74419D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9207T A9236C C14408T G21082S A21085M T21087C A21323G A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557476
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-745378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T A17841G C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557481
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-744054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC G29227K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557482
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FD62C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC C28171T C28725T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557484
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FD70B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C G10097A C13536T C13730T C14408T T20427A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557485
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-744449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A G12817T C13536T C14408T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557487
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7478B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G C26213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557488
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-74431F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9207T A9236C C14408T G21046K G21073K G21082C A21085M T21087C A21323G A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557492
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-751BF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10369T C14408T G18674A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557499
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-746984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T C16163T A20268G C21614T A23403G C24130Y C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557507
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7440CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G315A C3037T T3154C T4885C G11230T C14408T G21724T C22326T A23403G G23587C G24781A GGG28881AAC G29033T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557511
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-745730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557518
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FD880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557527
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-74533C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557533
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-746DD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C8208T C12747A C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557537
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7444FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7393T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557539
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-74527B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T T3925G G8371T G11083T C14408T C17746T G19962T G22240T C22477T A23403G T24142C G25563T A28591T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557541
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FCE9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A666G C1973T C3037T C4391A C11511T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557543
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-748551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C3037T C6990T T7357C C14408T C18877T A23403G G25563T C25710T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557544
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FBBE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T T14744C C19554T C21781T A23403G G24098T G25217T G25563T G26775T C29415T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557551
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-745448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C14408T T15648C A23403G G26140A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557553
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FAF24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6633T G10265A T13794G C14408T C19862T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557569
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7004EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557578
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FFDDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A C19145T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557584
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-72158B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C14408T T15648C A23403G G28423T GGG28881AAC G29557T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557589
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7016BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1692C C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557600
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E9C4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C12750Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557622
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E9ADC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635Y C1878T C3037T C14408T A23403G C28253Y GGG28881AAC C29627Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557636
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E51BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557659
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7214CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17135T C20936T A23403G G25217T C25350T T25899C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557688
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-723598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C14408T C14790Y G15380T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557714
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FF8BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T G8371T G11083T C14408T C17746T G19962T C22477T A23403G G25563T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557717
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7000BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557736
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-700C32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C13501T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557835
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BAB59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C11620T C14408T C22993T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557851
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B7284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557887
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B714B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T C17028T A17063G G17443T G18148T G20679K C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557920
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B7002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10733M C11289T C14408T T15051C C19185T A20255G A23403G G28079K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557929
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BB226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3153A C6573T C11208T C14408T C20221A A23403G G25278T T25496A G26918T GGG28881AAC G28904T T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557934
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B663E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557935
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B9FF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9207T A9236C C14408T G21073K G21082S A21085C T21087C A21323G A23403G C26625T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557939
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BB5D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3153A C6573T C11208T C14408T C20221A A23403G G25278T T25496A G26918T GGG28881AAC G28904T T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557950
 2020-06-29 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B9FB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560636
 2020-06-29 2020-09-29
 France hCoV-19/France/IdF8589/2020
 A26- C28T C241T C1059T C3037T A4233G C5178T C9214T T9629G C10889T C11941T C14408T A23403G C24138T C25324T G25563T C25821T C26461T C29144T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_560640
 2020-06-29 2020-09-29
 France hCoV-19/France/IdF8702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T19839C A23403G G25489T C25710T A27658G G28280T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560641
 2020-06-29 2020-09-29
 France hCoV-19/France/IdF8706/2020
 ATTAAA1- T10W C28T C241T G713T G2995T C3037T C4002T G10097A G12988T C13536T C14408T C21952T A23403G C23731T C25658T T26274C G26520A A27711T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_560642
 2020-06-29 2020-09-29
 France hCoV-19/France/IdF8707/2020
 ATTAAAGGTTTATACCTTCCC1- A26- C28T C241T G713T G2995T C3037T C4002T G10097A G12988T C13536T C14408T C21952T A23403G C23731T C25658T T26274C G26520A A27711T GGG28881AAC A29874G AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_564280
 2020-06-29 2020-09-30
 Australia hCoV-19/Australia/VIC7203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C2445T C3037T T7540C C12325Y C14408T G16647T C17463Y C18555T G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_566085
 2020-06-29 2020-10-01
 United States hCoV-19/USA/GA-CDC-5095/2020
 C241T C1288T G1298A C3037T C7162T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_566086
 2020-06-29 2020-10-01
 United States hCoV-19/USA/GA-CDC-5097/2020
 C241T C1288T G1298A C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_566089
 2020-06-29 2020-10-01
 United States hCoV-19/USA/GA-CDC-5101/2020
 C241T C1288T G1298A C1593T C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_566090
 2020-06-29 2020-10-01
 United States hCoV-19/USA/GA-CDC-5102/2020
 C241T C1288T G1298A C3037T C6196T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29742T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_566094
 2020-06-29 2020-10-01
 United States hCoV-19/USA/GA-CDC-5108/2020
 C241T C1288T G1298A C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_566097
 2020-06-29 2020-10-01
 United States hCoV-19/USA/GA-CDC-5113/2020
 G105T C241T C1288T G1298A C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_566098
 2020-06-29 2020-10-01
 United States hCoV-19/USA/GA-CDC-5115/2020
 C241T C1288T G1298A C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_566105
 2020-06-29 2020-10-01
 United States hCoV-19/USA/GA-CDC-5125/2020
 C241T C1288T G1298A C3037T A5637R A5648R C8208T T11805Y C14408T TT17262YY C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

MT919528
 2020-06-29 2020-08-22
 Denmark SARS-CoV-2/mink/DK/AD37_Farm3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15656T A22920T A23403G C25936T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT919530
 2020-06-29 2020-08-22
 Denmark SARS-CoV-2/mink/DK/AD40_Farm3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15656T A22920T A23403G C25936T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT919533
 2020-06-29 2020-08-22
 Denmark SARS-CoV-2/mink/DK/AL35_Farm3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C15656T A22920T A23403G C25936T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT919771
 2020-06-29 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-3477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G61T C241T C3037T C6726T C14408T G14414T C21597T A23403G C26607T GGG28881AAC C29144T G29543T G29654A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MT919772
 2020-06-29 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-3493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3938C C14408T A23403G GGG28881AAC A29735G C29774T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MT919773
 2020-06-29 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-3563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11083T C13051T C14408T C16726T C21597T A23403G A27224C GGG28881AAC C29144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MT919774
 2020-06-29 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-3593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7165T G11083T C13051T C14408T C21597T A23403G C23934T A27224C GGG28881AAC C29144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MT947546
 2020-06-29 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2715/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T T1927C C3037T C10319T C14408T A18424G G19999T C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT947571
 2020-06-29 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2714/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T T1927C C3037T C10319T C14408T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT947595
 2020-06-29 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2713/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C14408T A23403G G25563T G29553A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

MW001284
 2020-06-29 2020-09-14
 United States SARS-CoV-2/human/USA/290-NP-OP/2020/P1
 C241T G625T C1059T A2219G C2262T C3037T C11916T G13975T C14408T C17010T A18650T A23403G G25563T G28068T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_477786
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/CAMB-1B1B39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8322A C14408T C17738T C20611T A23403G ATCAGTTTCACCT27633- C27689T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29730- AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_478280
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/EXET-135F40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GACTA1312- C3037T A4079- TACTTGT11635- CG14293TT C14408T A20268G G21870C A23403G

EPI_ISL_478515
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/NORT-283A23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T TACATG21765- G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478519
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/NORT-283B11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15237T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478623
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/NORT-294F7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_478730
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF364/2020
 C241T C3037T C14408T G19072T A23403G GGG28881AAC

EPI_ISL_478733
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF3EC/2020
 C241T C3037T C14408T A23403G G26389T GGG28881AAC

EPI_ISL_478737
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF425/2020
 C241T C3037T C14408T A23403G G24038T GGG28881AAC

EPI_ISL_478745
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF4E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T42W A1515G C9223T C10277T G11083T C14805T T17247C G26144T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_478762
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF6A7/2020
 C241T C3037T C14408T T18398C A23403G G24781T C27864T GGG28881AAC AAA29890WWM AAAAAAAA29896-

EPI_ISL_478765
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF72C/2020
 A2480G C2558T C3737T G11083T C14805T C19269T G25354T G26144T C27679T

EPI_ISL_478778
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF865/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_478781
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF8A1/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_478793
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AF9EA/2020
 C241T C3037T C10818T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_478796
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFA23/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_478804
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFAE7/2020
 C241T C3037T C14408T T18398C A23403G G24781T G28580A GGG28881AAC

EPI_ISL_478805
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFB20/2020
 C241T C3037T T13972C C14408T A23403G G28655T GGG28881AAC AAAAAAAA29896-

EPI_ISL_478817
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFC69/2020
 C241T C3037T C14408T C16260T T19839C A23403G C26681T ATT27759- GGG28881AAC A29899R

EPI_ISL_478818
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFCA5/2020
 C241T C3037T C14408T A23403G GGG28881AAC AA29902-

EPI_ISL_478821
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFCE1/2020
 C241T C3037T C14408T C19488T A23403G GGG28881AAC

EPI_ISL_478825
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFD66/2020
 C241T C3037T T6769C C14408T A20796G A23403G G24038T GGG28881AAC G29050A

EPI_ISL_478831
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFE63/2020
 ATTAAAGGTTT1- C1346T A2817G G11083T G13627T C14805T C15540T C20178T G26144T C26882T A28338G A28455G

EPI_ISL_478833
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-AFEAF/2020
 C241T C3037T C14408T A23403G G24038T GGG28881AAC

EPI_ISL_478846
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B002D/2020
 C241T C3037T C14408T A23403G GGG28881AAC AA29902-

EPI_ISL_478849
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0069/2020
 C241T C3037T C14408T G19072T A23403G GGG28881AAC A29896R A29900R

EPI_ISL_478862
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B01A2/2020
 C241T C3037T C14408T T18398C A23403G G24781T GGG28881AAC AA29902-

EPI_ISL_478883
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B04A9/2020
 C241T C3037T C3373A C3923A C11195T C14408T C18252T G19455T A23403G GGG28881AAC

EPI_ISL_478885
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B052E/2020
 ATTAAAGGTTTA1- C241T C3037T C14074T C14408T G19072T C21597T A23403G C25066T G25494T GGG28881AAC A29895M AAAAAA29898-

EPI_ISL_478892
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B062B/2020
 C241T C3037T C14408T C19102T A23403G G24038T GGG28881AAC AAAAAAAAAAAAAA29890-

EPI_ISL_478896
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0667/2020
 C241T C3037T C14408T A23403G G24077T

EPI_ISL_478899
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B06A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19072T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_478910
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B07EC/2020
 C241T C3037T C14408T A23403G GGG28881AAC A29900R

EPI_ISL_478913
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0825/2020
 C176T C241T C3037T T3143C C6633T G9653T C14408T G17280A A23403G GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_478921
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C75M C147A C162S C4540T G6894T C8782T T9477A C14805T C18928T A21489C G25979T T28144C C28311T C28657T C28863T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_478925
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B09AA/2020
 C241T C3037T C14408T A20796G A23403G G24038T GGG28881AAC AAAA29900-

EPI_ISL_478941
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0BA4/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_478961
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0D62/2020
 C241T C3037T C14408T A23403G G25429T C26461T

EPI_ISL_478965
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0DAE/2020
 C241T C1059T G1599T C3037T G9595A C12786T C14408T A23403G G24368T G25563T C28310T AAAAAA29898-

EPI_ISL_478970
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0E6F/2020
 A2480G C2558T C6538T C11074T G11083T C14805T G26144T

EPI_ISL_478973
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0EAB/2020
 C241T C3037T C14408T A20796G A23403G G24038T GGG28881AAC

EPI_ISL_478981
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0F6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAAT1- A2480G C2558T G3483T C9180T G11083T C14805T A18956G C21658T C25521T C25603T G26144T C28253T C29520T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_478985
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B0FE4/2020
 C241T C3037T C6525T C14408T T18398C C22482A A23403G G24781T GGG28881AAC

EPI_ISL_478988
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B102C/2020
 A12M C241T A1154G C3037T C14408T T18398C A23403G G24781T G26416T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_478990
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1068/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_478993
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B10A4/2020
 T17K A1515G C9223T C10277T G11083T C14805T T17247C G26144T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_478996
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B10E0/2020
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_479005
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1332/2020
 C241T C3037T C14408T G19072T A23403G GGG28881AAC

EPI_ISL_479007
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1350/2020
 C241T C3037T C14408T G22592T A23403G GGG28881AAC

EPI_ISL_479011
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B13F6/2020
 C241T C3037T C14074T C14408T G19072T C21597T A23403G C25066T GGG28881AAC

EPI_ISL_479013
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1411/2020
 C241T C3037T C14408T C19488T C22009T A23403G C27046T C27595T C28826T GGG28881AAC

EPI_ISL_479015
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B145D/2020
 C241T C3037T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_479016
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B147B/2020
 C241T C3037T G10097A C14408T A23403G C23731T G28580T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_479019
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B14B7/2020
 C241T C3037T C14408T A20796G A23403G G24038T GGG28881AAC

EPI_ISL_479024
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B151E/2020
 C241T C3037T C14408T A23403G G25429T C26461T

EPI_ISL_479025
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1596/2020
 C241T C3037T C9333T G11083T C14408T A23403G G27238T G28077T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_479032
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1657/2020
 C241T C3037T C14408T G19072T A23403G GGG28881AAC

EPI_ISL_479040
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1736/2020
 C241T C3037T C5340T C14408T A19459G A23403G G25429T C25487T C28887T A29892W AAAAA29899-

EPI_ISL_479055
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B195E/2020
 C241T C3037T C10818T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_479063
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1A1F/2020
 C241T C3037T C14408T A23403G GGG28881AAC G29736T

EPI_ISL_479070
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1AD3/2020
 C241T C3037T C9891T C14408T T15051C C18322T T18398C A23403G G24781T GGG28881AAC G29868S AA29893CC

EPI_ISL_479077
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1B76/2020
 C241T C3037T C10818T C14408T A23403G G24781T GGG28881AAC

EPI_ISL_479081
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1C55/2020
 C241T C3037T A14291C C14408T G22785T C23059A A23403G GGG28881AAC AAA29901-

EPI_ISL_479088
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1CFB/2020
 C241T C3037T C3373A C3923A C11195T C14408T C18252T G19455T A23403G GGG28881AAC

EPI_ISL_479092
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1DDA/2020
 C241T C2142T C3037T G8102T C12741A C14408T C18814T C19170T G19509A T21015C A23403G GGG28881AAC A29871T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_479094
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B1DF8/2020
 C241T C3037T C3373A C3923A C11195T C14408T C18252T G19455T A23403G GGG28881AAC

EPI_ISL_479106
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B201C/2020
 C241T C1059T C3037T T7302C C7764T C14408T G22141A A23403G G25563T C28932T C29067T AAAAAAAAA29895-

EPI_ISL_479107
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B203A/2020
 C241T C3037T G10097A C14408T C19862T A23403G C23731T C25609T G28580T GGG28881AAC G29543T

EPI_ISL_479115
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B20FE/2020
 C241T C3037T C9333T C14408T C19007T A23403G G27238T G28077T AAAAAAAAAAA29893-

EPI_ISL_479168
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/OXON-B26FC/2020
 C241T C3037T C3373A C3923A C11195T C14408T C18252T G19455T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_479182
 2020-06-30 2020-06-30
 United Kingdom hCoV-19/England/PORT-2D132B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T C11074T G11083T C11355T C11884T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486845
 2020-06-30 2020-07-11
 Ecuador hCoV-19/Ecuador/USFQ-110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T26512C TAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29823-

EPI_ISL_486846
 2020-06-30 2020-07-11
 Ecuador hCoV-19/Ecuador/USFQ-111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_486847
 2020-06-30 2020-07-11
 Ecuador hCoV-19/Ecuador/USFQ-1112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T26512C TAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29823-

EPI_ISL_486848
 2020-06-30 2020-07-11
 Ecuador hCoV-19/Ecuador/USFQ-113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T T3793C C14408T A23403G A26530G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_486849
 2020-06-30 2020-07-11
 Ecuador hCoV-19/Ecuador/USFQ-114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_486850
 2020-06-30 2020-07-11
 Ecuador hCoV-19/Ecuador/USFQ-118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_486851
 2020-06-30 2020-07-11
 Ecuador hCoV-19/Ecuador/USFQ-119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC

EPI_ISL_489932
 2020-06-30 2020-07-14
 United States hCoV-19/USA/WI-GMF-08638/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T G26116T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489933
 2020-06-30 2020-07-14
 United States hCoV-19/USA/WI-GMF-08666/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489935
 2020-06-30 2020-07-14
 United States hCoV-19/USA/WI-GMF-08729/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489965 LR861488
 2020-06-30 2020-07-14
 Switzerland 180011
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C207T C241T A2905W T2985Y C3037T G3125K C4002T G5950K A6911M G10097R C13536T C14408T G19732T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489969 LR861666
 2020-06-30 2020-07-14
 Switzerland 180021
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G1590R G3030R C3037T C6730Y C10626Y C11471T C12789Y C14408T C19524T G22205C A23403G C25731T GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489972 LR861489
 2020-06-30 2020-07-14
 Switzerland 180030
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C775Y C2940Y C3037T C3140Y C4002T G5950K C6896Y G10097R C13536T C14408T G19732T C21846T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489986 LR861676
 2020-06-30 2020-07-14
 Switzerland 180052
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G11842A A12759G C14408T G18292T A20268G A23403G C27813T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_490330
 2020-06-30 2020-07-15
 United Kingdom hCoV-19/England/CVR3937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T C23029T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490700
 2020-06-30 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR3935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T C3276T G3483T G10097A T10992C C11001T C14408T C23029T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491302 MT772486
 2020-06-30 2020-07-16
 United States SARS-CoV-2/human/USA/CA-UW-710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T A23403G C25162A G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491306 MT772512
 2020-06-30 2020-07-16
 United States SARS-CoV-2/human/USA/FL-UW-741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491372
 2020-06-30 2020-07-16
 United States hCoV-19/USA/WI-UW-694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CGGTTTCGTCCGT197- C241T T2845C C3037T C6500T C14408T A20268G G22014T A23403G C27577T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491381 MT772479
 2020-06-30 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T G25654T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491383 MT772481
 2020-06-30 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491397
 2020-06-30 2020-07-16
 United States hCoV-19/USA/WI-UW-722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CGGTTTCGTCCGT197- C241T T2845C C2939T C3037T C6500T C14408T A20268G G22014T A23403G C27577T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491398 MT772496
 2020-06-30 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10202T C14408T C23191T A23403G G25563T C26111T G27987T G28085A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491401 MT772498
 2020-06-30 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G T27212C C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491402 MT772499
 2020-06-30 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9120T C14408T A19899T A21464G A23403G G25444A G25563T G29543T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491405 MT772502
 2020-06-30 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491407 MT772504
 2020-06-30 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C23929T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491413 MT772509
 2020-06-30 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- TTACGGTTTCGTCCGTG194- C241T C1059T C3037T T3049C G4972A C14408T A23403G A24129G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491416 MT772514
 2020-06-30 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491421 MT772519
 2020-06-30 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T G25654T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491717
 2020-06-30 2020-07-17
 United Kingdom hCoV-19/England/202881383/2020
 C241T C3037T C7165T G10265A C14408T C15720T A15972G C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC

EPI_ISL_491718
 2020-06-30 2020-07-17
 United Kingdom hCoV-19/England/202881384/2020
 C241T C3037T C7165T G10265A C14408T C15720T A15972G C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC

EPI_ISL_491719
 2020-06-30 2020-07-17
 United Kingdom hCoV-19/England/202881385/2020
 C241T C3037T GT5743SY C7165T G10265A C14408T C15720T A15972G C19718T G22381A A23403G C24795T G25838K G26700T T28759C GGG28881AAC

EPI_ISL_491720
 2020-06-30 2020-07-17
 United Kingdom hCoV-19/England/202881386/2020
 C241T C3037T C7165T G10265A A11430G C14408T C15720T A15972G C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC

EPI_ISL_491936
 2020-06-30 2020-07-17
 Ecuador hCoV-19/Ecuador/USFQ-139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G A26530G C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491937
 2020-06-30 2020-07-17
 Ecuador hCoV-19/Ecuador/USFQ-147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8266T C14408T C15222T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_491938
 2020-06-30 2020-07-17
 Ecuador hCoV-19/Ecuador/USFQ-150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G A26530G C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492988
 2020-06-30 2020-07-20
 Latvia hCoV-19/Latvia/043/2020
 C241T C313T C2388T C3037T C3602T C9114A C14408T A23403G T26424C G27147T GGG28881AAC

EPI_ISL_493385
 2020-06-30 2020-07-21
 Norway hCoV-19/Norway/2832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C5497T C8752T C9520T G10097A C10125T C13536T C14408T T17067C C19979A T20874C A23403G C23731T G27261T G27877T C28093T GGG28881AAC C29546T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493389
 2020-06-30 2020-07-21
 Norway hCoV-19/Norway/2836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5273A C14408T A23403G G24368T G25563T G28212T G28798T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495021
 2020-06-30 2020-07-22
 India hCoV-19/India/GBRC284a/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2836T C3037T C3817T C14408T C18877T G21724T C22444T A23403G G25563T C26735T G28083T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495022
 2020-06-30 2020-07-22
 India hCoV-19/India/GBRC284b/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1346A C2836T C3037T C3817T C14408T C18877T G21724T C22444T A23403G G25563T C26735T G28083T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_498146
 2020-06-30 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3624A C4052A C10029T C10449T C14408T T19839C C21646T A23403G C26846T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499385
 2020-06-30 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C775T C3037T C9438T C14408T G21160A A23403G GGG28881AAC G29777T AAA29901-

EPI_ISL_499443
 2020-06-30 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C815T C3037T T3049C C14408T G21624T A23403G G27877T GGG28881AAC

EPI_ISL_499675
 2020-06-30 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A601B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C1190T C3037T C14408T C18744T A18978R A23403G G25563T A29391G C29870M

EPI_ISL_499982
 2020-06-30 2020-07-28
 United Kingdom hCoV-19/England/LCST-24D7387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500029
 2020-06-30 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A4499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2807G C3037T T4615Y A10990G T13827C C14408T G18756T A23403G C26176T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500554
 2020-06-30 2020-07-29
 Singapore hCoV-19/Singapore/744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C11779T C13730T C13740T T16542C G17427T C18894T C19524T C23929T G27047T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500555
 2020-06-30 2020-07-29
 Singapore hCoV-19/Singapore/601nan/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A C7334T A10323G G11083T C12400T C13730T A15954G C19524T T21775C C23929T A23989T A25822G C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501084
 2020-06-30 2020-07-30
 United States hCoV-19/USA/UN-UW-13432/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T C3037T A3424G C11916T C14408T G18636A C18654T A23403G G25563T G26020T G29864A TG29867AA C29870A -29904AAAAAA

EPI_ISL_501085
 2020-06-30 2020-07-30
 United States hCoV-19/USA/UN-UW-13444/2020
 ATTAAAG1- TCCC18GGGA AAC34HTT C241T C1059T C3037T A3424G C11916T C14408T G18636A C18654T A23403G G25563T G26020T TG29867AA C29870A

EPI_ISL_501121
 2020-06-30 2020-07-30
 United States hCoV-19/USA/WA-UW-13227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- A31T AAC34TTT C241T C913T C1059T C1758T C3037T C5183T C5907T C7471T G11083T C12534T C14408T A15942G A22320G A23403G G25563T G29868A C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501122
 2020-06-30 2020-07-30
 United States hCoV-19/USA/WA-UW-13232/2020
 AT1- T3Y C36T C241T C3037T C14408T G18803T C19961T A22606G A23403G GGG28881AAC TG29867AA C29870A

EPI_ISL_501125
 2020-06-30 2020-07-30
 United States hCoV-19/USA/WA-UW-13262/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- C36T C241T C3037T T10554D TA14222GC C14408T C18486T A20268G T21146D T22162C A23403G C28854T G29862A G29864A TG29867AA C29870A

EPI_ISL_501126
 2020-06-30 2020-07-30
 United States hCoV-19/USA/WA-UW-13264/2020
 ATTAAAGGTTTATA1- TCCC18GGGA AACC34TTTA C241T C3037T C12073T AGG13512TTA TA14222GC C14408T C18486T A20268G T21146A G21151T T22162C A23403G C27654G C28854T G29862A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501128
 2020-06-30 2020-07-30
 United States hCoV-19/USA/WA-UW-13274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T G7393T C8950T T10554A AGG13512TTA TA14222GC C14408T C15933T G16968T TG17178GT G17182A T19839C A23403G C27654G A27658T A27660G GGG28881AAC C29784T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_507957
 2020-06-30 2020-08-03
 United States hCoV-19/USA/MN-MDH-1369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C18486T A20268G T22162C T22463W A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_507960
 2020-06-30 2020-08-03
 United States hCoV-19/USA/MN-MDH-1372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_508756 MT834693
 2020-06-30 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0553/2020
 AT1- C241T C815T C3037T C3411T C8389T T10795C C14408T A17521G C18452T A23403G G25563T G27915A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_508758 MT834695
 2020-06-30 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0555/2020
 ATTAA1- C241T C1059T C3037T C14408T T22220C A23403G T24982C G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_508759 MT834696
 2020-06-30 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0556/2020
 A1- C241T C1059T C3037T C10188T C14408T T22220C A23403G T24982C G25563T T25713C C27964T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_508760 MT834697
 2020-06-30 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0557/2020
 C241T C920T C1059T C3037T G6036T C10188T C14408T T22220C A23403G C23439T T24982C G25563T G26814T C27964T C29625T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509822 MT846506
 2020-06-30 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T T11773A C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509854 MT846538
 2020-06-30 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512332
 2020-06-30 2020-08-11
 United Kingdom hCoV-19/England/CAMB-1B586B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C556T C1912T C3037T C4002T G9479T G10097A C13536T C14408T G21220T A23403G C23731T T24063C A25948G C27476T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512573 MT893686
 2020-06-30 2020-08-11
 United States SARS-CoV-2/human/USA/FL-BPHL-0768/2020
 ATT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T A23403G G25563T C28087T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_513285
 2020-06-30 2020-08-12
 United States hCoV-19/USA/FL-AG7J/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T T1536C C3037T C5812T C14408T T18876C A23403G C23506T C24748T C25469T G25563T C29733T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_513286
 2020-06-30 2020-08-12
 United States hCoV-19/USA/FL-AH8N/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C673T G1580A C3037T T4125C G7936T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_513293
 2020-06-30 2020-08-12
 United States hCoV-19/USA/PR-AHAA/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C5547T C10319T C14408T G16710T T17323C G17964T G20176T A23403G T24274C A25121T G25563T C27964T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_514634 MT892981
 2020-06-30 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5310T C12294T C14408T A23403G C25511T G25563T CGGAGT29743- GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514995
 2020-06-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T G29861- G29868A

EPI_ISL_514996
 2020-06-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2593/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C14408T C15024T C16650T A20675T A23403G G25563T G29179T G29779T AGGAG29860-

EPI_ISL_514997
 2020-06-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_514998
 2020-06-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2595/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C27643T G29179T G29779T ACAAAAAAAAAAAAAA29869-

EPI_ISL_514999
 2020-06-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2596/2020
 ATTAAAGGT1- A12G C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T G29861- G29864A

EPI_ISL_515000
 2020-06-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2597/2020
 A1- A4G C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T C29370T G29779T AGAA29863- C29870A

EPI_ISL_515001
 2020-06-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2598/2020
 AT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T GGAGAAT29861-

EPI_ISL_515002
 2020-06-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2599/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G27987T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_515003
 2020-06-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2600/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C5365T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_515004
 2020-06-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2601/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C27643T G29179T G29779T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_515012
 2020-06-30 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2609/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C27643T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_515525
 2020-06-30 2020-08-19
 Brazil hCoV-19/Brazil/SP-600/2020
 ATTAAAGGT1- TAC13CTA TT17AA C20A GGT23ACA C241T C3037T C14408T A23403G T27299C GGG28881AAC T29148C AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_515584
 2020-06-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002185/2020
 ATT1- C241T C3037T A3891G C5974T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_515585
 2020-06-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5144T C5974T C14408T A23403G C23520T C27213T GGG28881AAC C29724T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515835
 2020-06-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001350/2020
 ATTAAAGGTTTATAC1- C241T C3037T A7064G C14408T G19429A C22675T A23403G C26822T T27384C GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_516753
 2020-06-30 2020-08-22
 United States hCoV-19/USA/SC-20-1273-T07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T A23403G G25563T C28087T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_520616 MT970278
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520646 MT970280
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521459 MT969375
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521460 MT969376
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2587/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521461 MT969377
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2588/2020
 ATTAAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521463 MT972318
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521464 MT972319
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521465 MT972320
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521468 MT972323
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_521469 MT972324
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2623/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_521470 MT972325
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_521471 MT972326
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4586T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C28629T GGG28881AAC

EPI_ISL_521472 MT972327
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521473 MT972328
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521474 MT972329
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2628/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521475 MT972330
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521477 MT972332
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2631/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T C7528T T7540C C12153T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521478 MT972333
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521502 MT972357
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521503 MT972358
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521504 MT972359
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521506 MT972361
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2660/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521517 MT972371
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521519 MT972373
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521653 MT969553
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2822/2020
 C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521672 MT969572
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521853 MT972427
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521862 MT972098
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/NT53/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522113 MT969477
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18652T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522189 MT969485
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522193 MT969489
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G11083T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522195 MT969491
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T A14920G G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522198 MT969494
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522199 MT969495
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2502/2020
 A1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26885T GGG28881AAC

EPI_ISL_522202 MT969499
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522210 MT969507
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C T27484C GGG28881AAC

EPI_ISL_522211 MT969508
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522215 MT969512
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522218 MT969515
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2524/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522219 MT969516
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2525/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C25665T GGG28881AAC

EPI_ISL_522220 MT969517
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C28629T GGG28881AAC

EPI_ISL_522222 MT969519
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522223 MT969520
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522225 MT969522
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522226 MT969523
 2020-06-30 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522467
 2020-06-30 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A35T C222- C241T G2086T C3037T C3809T C14408T A23403G GGG28881AAC A29869T

EPI_ISL_523596
 2020-06-30 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C186T C241T C3037T G6446T G8179T C14408T G15451A C20930T A23403G T24214C G28812T GGG28881AAC A29763G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523597
 2020-06-30 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523609
 2020-06-30 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C622T C3037T G4657T T5182C C11758T C13059T C14408T C15324T G16846T C16887T A23403G C25075T C25889T C25904T C29733T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525805
 2020-06-30 2020-09-01
 United States hCoV-19/USA/CA-OHSU-0925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T18392C A20268G C20759T A23403G T24076C G27163T C28854T

EPI_ISL_525922
 2020-06-30 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0899/2020
 ATTA1- C241T C3037T G3452A C3992T G4510T C8311T C14408T C15933T T19839C A23403G T25451C GGG28881AAC

EPI_ISL_525923
 2020-06-30 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0901/2020
 A1- C241T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_525930
 2020-06-30 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8729A C14408T C19586T G20980A A23403G G24751T

EPI_ISL_525939
 2020-06-30 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4133A C4320T C14408T C18486T A20268G T22162C A23403G C28854T

EPI_ISL_526879
 2020-06-30 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2585R C3037T T6294C C8664A G8851A T12383C C14408T A23403G C25350T A25505C C26521T GGG28881AAC G29427T C29870A

EPI_ISL_526881
 2020-06-30 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T6294C C8664A G8851A T12383C C14408T A23403G C25350T A25505C C26521T GGG28881AAC G29427T C29870M

EPI_ISL_527022
 2020-06-30 2020-09-03
 Australia hCoV-19/Australia/NSW2486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2700T C3037T A3569G C4965T A8072G G13812T C14408T A16011G A21213G C23114T A23403G GGG28881AAC C29149T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527023
 2020-06-30 2020-09-03
 Australia hCoV-19/Australia/NSW2487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2700T C3037T A3569G C4965T A8072G G13812T C14408T A16011G A21213G C23114T A23403G GGG28881AAC C29149T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527024
 2020-06-30 2020-09-03
 Australia hCoV-19/Australia/NSW2495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C3037T C6195T C10969T G11083T C14408T T17568C G17679T G20679T A23403G G25785T C26841T T28098C C28153T GGG28881AAC C29722T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527742
 2020-06-30 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T A3058G C6318T G10360A A14033G C14408T G15957T A23403G C25096T C25703T A28574C GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_528705
 2020-06-30 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/558/2020
 C241T C3037T C10854T C14408T G19872A A20268G T23257C A23403G T28031C C28854T

EPI_ISL_529661
 2020-06-30 2020-09-10
 United Kingdom hCoV-19/England/HECH-259A47D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10202T C14408T G21255T A23403G C23731T C27538A G28580T G28803A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529662
 2020-06-30 2020-09-10
 United Kingdom hCoV-19/England/HECH-259A4AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C10202T C14408T G21255T A23403G C23731T C27538A G28580T G28803A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530174 MT997696
 2020-06-30 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10376T T13339C C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536482
 2020-06-30 2020-09-16
 Peru hCoV-19/Peru/ANC-INS-083/2020
 ATTAAAG1- C241T G1306A C3037T C4002T A5958G G10097A A10323G C13247T C13536T C14408T A23403G C23731T GGG28881AAC G29179T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_541004
 2020-06-30 2020-09-22
 South korea hCoV-19/South Korea/IHC18561/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C5365T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T ACAAAAAAAAAAAAAA29869-

EPI_ISL_545593
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C14408T A23403G G25563T C27964T C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545609
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T G3433A C13487T C14408T C16260T C21575T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545621
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6352T A10323G C14408T T15276A C23191T A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545630
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T A1305G C3037T C10401T C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545636
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C11514T C14408T C16017T T19284C A23403G C23444G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545638
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T G25963A C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545644
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545650
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C11514T C14408T C16017T T19284C A23403G C23444G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545651
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C11514T C14408T C16017T T19284C A23403G C23444G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545660
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T A1547G C3037T C14408T C16017T A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545661
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1912T T1936C C3037T G3433A C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C27679T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545662
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T C7104T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545663
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2969G C3037T G3437A G4913T G8131T C14408T C17104T G17331T G21641T A23403G G25563T G26389T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545666
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9474T C10319T C14408T C15546T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545669
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545670
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5023T G9968A C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545671
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545672
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545675
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3069G T6658C G7798T G11114A T11134C C14408T C19011T A23403G G25819A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545676
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A19212G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545677
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27641T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545678
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8105T C8123T C14408T A23403G G24812T C24919T GGG28881AAC C29733T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545680
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545683
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545684
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1813A T1936C C3037T C4331T G11888T C13487T C14408T C16192T C16260T C18981T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545685
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4148T G4399T C14408T G17808T A23403G G25563T C27964T T28705C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545687
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T G19872T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545689
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C27143T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545700
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T C10319T C14408T A23403G G25563T G25641T C27964T C28849T C29762T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545720
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8140T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545734
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545758
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T T14238C C14408T G15202C A23403G G25563T C26456T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545761
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T5840C C14408T C16260T A23403G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546567
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1205A C3037T C4784T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546650
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546749
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546750
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G G19006T C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546790
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-7479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C28657T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546950
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6120T C6843T C10319T C14408T G16014A T17353C C21054T C23315T A23403G G25563T G25641T A27510T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546980
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T3781C G11464A C14408T A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546984
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546995
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2025T C3037T G3692T G4399T A9750G C14408T A23403G G25563T G29736T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547003
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547007
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4794T C7932T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547008
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T T14067C C14408T C16017T A23403G C24718A C26606T T27212C G27561T C27600T T27656C C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547009
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C9967T C14408T C17639T A18172T A23403G C29721T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547010
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T G4508T T9742C C10336T C14408T C17639T A23403G G29511A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547011
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T C10319T C14408T G16365T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547016
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20536G A23403G C27641T GGG28881AAC G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547020
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C11514T C14408T C16017T T19284C A23403G C23444G C24718A T26145C T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547021
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A6639T C10319T C13608T C14408T G20438A A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547031
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A15436G A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547046
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T T14619C C16017T A23403G C24718A C26606T T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547048
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11003T C12756T C14408T C20474T A23403G C23481T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547056
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2025T C3037T G3692T G4399T A9750G C14408T A23403G G25563T G29736T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547072
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2025T C3037T G3692T G4399T A9750G C14408T A23403G G25563T G29736T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547077
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547079
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2086T C3037T C10319T G11113T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547088
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2258A C3037T A6441G C8140T A9204G C14408T A20268G A23403G C28854T C29445T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547092
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T T11134C C14408T A18535G C19011T G20734A A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547095
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G T25392C G25563T G25907T G26589T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547096
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C20823T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547097
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T A23403G G25563T C25680T G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547100
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G24197T C25886T GGG28881AAC G29224T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547106
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22747T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547107
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13618T C14408T C20474T A23403G GGG28881AAC C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547111
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2618G C3037T C3737T A4899G G10642T G11146T C13774T C14408T C15540T C20474T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547118
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2324A A2969G C3037T C13274T C14408T C17104T G19816T A23403G C25546T G25563T G26389T C27964T G28703C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547119
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C G11083T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547122
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4276T C5575T C11916T T13914C C14408T C18998T C19186T A23403G G25563T G29449C G29540A T29581C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547123
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C2062T C3037T C9521A C14408T A20268G A23403G C24904T C28854T G29422T A29567G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547139
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A3933G C11208T C14408T C14676T A23403G G25647T GGG28881AAC C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547144
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G669A G2035T C3037T C14408T G19086T C21812T A23403G G27561T C28320T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547146
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547155
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-5998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547158
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T G14923A T15276A A23403G C25000T G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547160
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14676T A23403G G25647T T27722C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547163
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1113T C3037T C9967T G10902A G12163T C14408T C18687T C20429T A23403G G25563T C26464T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547169
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T T1390G C3037T A4340G C9565T C10319T C14408T C21646T A23403G G25287T G25563T G25641T C25667T C27641T C27964T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547173
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547175
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547176
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5884T C11758T C14408T C16260T A23403G C23625T G25563T C27294T G27955A C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547177
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2086T C3037T T7292C C10319T G11113T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547178
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C G11083T A11155G C14408T C17639T G17679T A19212G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547180
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547183
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16914T A23403G GGG28881AAC G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547188
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547190
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T T1390G C3037T C9565T C10319T C14408T C17028T C22264T A23403G G25563T G25641T C27964T C28849T C29296T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547195
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T G1661A C2003T A2658T C3037T G4444T C10029T C10277T C11050T C14408T A16941G G17320T C18877T A23403G G25563T C28435T C29274T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547200
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T C21638T A23403G T24212G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547202
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T C21306T A23403G C25613T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547204
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16899C C22747T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547372
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T C13860T C14408T C15960T C16952T C19269T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547383
 2020-06-30 2020-09-24
 United States hCoV-19/USA/TX-HMH-6312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549269 MW040697
 2020-06-30 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1487/2020
 AT1- C241T T833C C1059T C3037T C14408T T14867C C18508T A23403G G25563T C25904T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_551786
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-6938B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1960T C3037T A4328G C14408T G18186T A23403G T23866A G24535T C26885T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551800
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-693A4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C5621T G9479T C14408T A20288C A23403G G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556081
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CC1AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C11758T C14408T C18788T T19839C C23230T A23403G -25700CCC C28171T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556084
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CC7F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556101
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6DA986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C5730T C14408T A23403G C27855Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556106
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6DAA74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556107
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CA497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T C14408T C21637T A23403G A28169G GGG28881AAC G29557C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556122
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CA109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4455T G12989A C14408T C21637T A23403G A28169G GGG28881AAC G29557C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556230
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D68D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G25912T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556989
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D85EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16289T A23403G G25429T C26681T A29385G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557127
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D4D06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A15647C A19182G A23403G C26464T C28253T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557363
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FC9D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T T6667W A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC C29236M CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557367
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-74B0F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3569G C3695T A6211G A8659G A9883G C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557380
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FC72A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557381
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FBB01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T T3862C C14408T G18880A A23403G T28149C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557386
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-6F81D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13548T C13730T C14408T A15942G G23120T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557389
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-74EE41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C1973T C3037T C3261T C4456T C5621T G9479T C14408T A20288C A23403G A25201W C25624T C26894Y G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557401
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-74BA22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C4456T C5621T G9479T C14408T A20288C A23403G C25624T G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557410
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-6F5A0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C4784T C5621T G9479T C14408T A20288C A23403G G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557418
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-74B530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3569G C3695T A6211G A8659G A9883G C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557435
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-74A838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C13548T C13730T C14408T A15942G G23120T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557445
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-6F9D67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G343T C3037T A8884G C14408T G21220T T22756C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557456
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-6F58B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1194G C1387T G1595A C3037T T3873C C6636T A8072G C14408T A23403G C27610T G28300T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557467
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-74B1A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3569G C3695T A6211G A8659G A9883G C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557496
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-6F65EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1194G C1387T G1595A C3037T T3873C C6636T A8072G C14408T A23403G C27610T G28300T GGG28881AAC C29409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557521
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-6F47F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1314T C2676T C3037T C4582T G8540A C12102T C14408T A19782T C21855T A23403G T25159C T26609C C27944T GGG28881AAC G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557526
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FC9E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC C29236A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557531
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6FD756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C11985T T13216G C14408T C17333T A23403G C23731T T25751C C28720T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557536
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-74DB0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C13548T C13730T C14408T A15942G G23120T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557545
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-6EECA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G T13764C C14408T C17999T C19488T G22225T A23403G T27501G GGG28881AAC G29736C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557546
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-6F0B84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2801T C3037T C10369T C14408T G18674A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557550
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-74B433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3569G C3695T A6211G A8659G A9883G C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557554
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6EBBD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8717T T9292C C14408T C21637T A23403G A28169G GGG28881AAC A29565G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557557
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7060F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557559
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7094F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C17762T A19650G A23403G G27841T C28333T GGG28881AAC C29367T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557560
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-708A12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1581C C3037T C4931T C5055T C14408T T19893C A23403G GGG28881AAC G29628C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557562
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E98D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T G21518T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557563
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-70B086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T -11072TTC G11083K C11704Y C14220T C14408T T19893C A20294W A23403G C24370T C25728T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557564
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-70409C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557565
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-704EFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5010T C14408T T15648C A23403G A27421G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557566
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E9052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5658C C9308Y C13665T C14408T C17304T A23403G A24367G C24621T C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557568
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6EA6C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9207T A9236C C14408T A21085M T21087C A21323G A23403G C26625T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557571
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-702C7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T C17333T C20823T A23403G C23731T T25751C C28720T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557574
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-704D1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G G24872T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557577
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-702EEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557580
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-70AB3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T C17333T G18169K C20823T A23403G C23731T T25751C C28720T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557586
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6EAC02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4803G G10265A T13794G C14408T A23403G C27002T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557590
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-7058FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557591
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-70414E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557592
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E9C6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T G13749T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557594
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-70847E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1972G C3037T C6525T C14408T G18020A G19816T A23403G G24038T G26784T GGG28881AAC G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557599
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-709668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C3393T C14408T A23403G C25561T G25563K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557601
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-70814A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557602
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-70720C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C583T C3037T T5507A C8597T C14408T C18457T A20268G A23403G G25494K C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557606
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-706CC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C11620T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557608
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E97E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4803G G10265A T13794G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557610
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6EB849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C26645T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557611
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E8994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T A28338G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557613
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7054AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8392C C8683T C13335T C14408T A20268G A23403G G24764A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557617
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6EA7B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6601G G11842A C14408T G15535T C16092T C21721T C21952T C23086T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557623
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-722D28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G A24367G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557628
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E9D88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4832T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557631
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-704A61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G G24872T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557633
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6DE16C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2040T C3037T C14408T A14791T G21518T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557634
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6EA9A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5658C C13665T C14408T C17304T A23403G A24367G C24621T C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557635
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E8F0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2110T C3037T A4926C C14408T G15602A G18469K G21624T A23403G G24095K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557637
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E8F38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557645
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E492F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3561Y G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557648
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6EB050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G A24367G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557656
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-70D39A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C3393Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557662
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-709905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4803G G10265A T13794G C14408T A23403G C27002T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557664
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-709F21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4803G G10265A T13794G C14408T A23403G GGG28881AAC C29095Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557665
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E21FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5050C A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557667
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6EB80D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A666G C3037T C4391A C11511T C14408T G14653T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557669
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-704CF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T A9433T G10265A C14408T C18568T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557671
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E95EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557674
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-70B4A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C11620T C14408T A20265M A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557682
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7091C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T A20055G C21614T A23403G C23731T C25701A G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557693
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E825D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T T8188A C14408T C17676T T21581C A23403G G27201T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557697
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7090A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C24700A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557699
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-704B5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G G24872T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557702
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-703437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557703
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6EAB14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5658C C13665T C14408T C17304T A23403G A24367G C24621T C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557706
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-70956B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557708
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-70A01E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557710
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-704DB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557712
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-708951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G A5877G G10097A C14408T A20055G A23403G C23731T G25947T T28723C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557718
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-704BE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557719
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E82D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T T8188A C14408T C17676T T21581C A23403G G27201T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557720
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6DE2C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2040T C3037T C14408T A14791T G21518T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557731
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6EAEDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4803G G10265A T13794G C14408T A23403G C27002T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557733
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E9D00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557734
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-70A5E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T T1728C C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557785
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B2A81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G599A T2153A C3037T C14408T A23403G G26589C A27083G C27128T GGG28881AAC C29520T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558070
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66E617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7279T A9433T G10265A C14408T A19650G A23403G GGG28881AAC G29751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558608
 2020-06-30 2020-09-28
 United Kingdom hCoV-19/England/ALDP-5D9706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G C24351Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560639
 2020-06-30 2020-09-29
 France hCoV-19/France/IdF8697/2020
 ATTAAAGGTTTATACCTTCCC1- A26- C28T C36T C241T G713T G2995T C3037T C4002T G10097A C13536T C14408T C21952T A23403G C23731T C25658T T26274C G26520A A27711T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_561215
 2020-06-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-1212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C6573T T9919C C14408T A20268G A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564279
 2020-06-30 2020-09-30
 Australia hCoV-19/Australia/VIC7202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564289
 2020-06-30 2020-09-30
 Australia hCoV-19/Australia/VIC7216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A5353G T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G A28624G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_566092
 2020-06-30 2020-10-01
 United States hCoV-19/USA/GA-CDC-5104/2020
 C241T C1288T G1298A C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_566093
 2020-06-30 2020-10-01
 United States hCoV-19/USA/GA-CDC-5107/2020
 C241T C1288T G1298A C3037T C3817T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_566099
 2020-06-30 2020-10-01
 United States hCoV-19/USA/GA-CDC-5117/2020
 C241T C1288T G1298A C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_566100
 2020-06-30 2020-10-01
 United States hCoV-19/USA/GA-CDC-5118/2020
 C241T C1288T G1298A C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

MW030238
 2020-06-30 2020-09-22
 Peru SARS-CoV-2/human/PER/covper007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T T1753C C3037T C4002T G10097A A10323G C13536T C14408T C18493T G21255T A23403G C23731T GGG28881AAC G29179T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_498543
 2020-06-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7318T C14408T C18877T A23403G G25563T C26735T G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509017
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/A_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C3037T C7224T C14220T C14408T C19662T C23114T A23403G C23415T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509018
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/B_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1686T C3037T G5572A A6366T T9440G G11410A C14408T A23403G G24872T G25776T GGG28881AAC A28973G G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509019
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/D_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C3037T T3547C G5572A A6366T T9440G G11410A C14408T C19488T A23403G G25776T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509020
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/E_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1686T C3037T G5572A A6366T T9440G G11410A C14408T C19488T A23403G G24872T G25337T G25776T GGG28881AAC A28973G G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509021
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/F_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C3037T C7224T C14408T C19662T C23114T A23403G C23415T GGG28881AAC G29751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509022
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/G_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1686T C3037T G5572A A6366T T9440G G11410A C14408T C19488T A23403G G24872T G25337T G25776T GGG28881AAC A28973G G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509023
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/H_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1686T C3037T G5572A A6366T T9440G G11410A C14408T C19488T A23403G G24872T G25337T G25776T GGG28881AAC A28973G G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509024
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/I_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5694T A6133G C14408T G20419T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509026
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/J_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A773G C829T C1059T C3037T C14408T C20132T A23403G G25563T A25873T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509028
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/K_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3587T G7936A C10626T C14408T A23403G C25886T C28354T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509029
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/L_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5694T A6133G C14408T G20419T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509031
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/M_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3587T G7936A C10626T C14408T A23403G C25886T C28354T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509033
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/O_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5694T A6133G C14408T T15930G G20419T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509035
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/P_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C3037T C7224T C14408T C19662T C23114T A23403G C23415T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509037
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/S_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C3037T C7224T G14030A C14408T C19662T C23114T A23403G C23415T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509038
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/W_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C3037T C7224T C14408T C19662T C23114T A23403G C23415T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509051
 2020-06-xx 2020-08-05
 Poland hCoV-19/Poland/X_348r/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5694T A6133G C14408T G20419T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510545 LC573289
 2020-06-xx 2020-07-30
 Japan SARS-CoV-2/Hu/KngFJ/23RD5
 A1CCACGTCCAACTTAGTTTGCCGGGGA C241T C313T G2305T C3037T C14408T A23403G G25563C G28178T GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_517620
 2020-06-xx 2020-08-24
 Suriname hCoV-19/Suriname/SR-09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T A13449G C14408T C15324T C16193T C18060T A22404T C22450T A23403G C28253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_548779
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00820/2020
 ATTAAAGGT1- C241T G1542A C3037T C3117T C14408T A23403G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548782
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C14408T C16580T C18501T C20669T T22324C A23403G G25690T C27538T GGG28881AAC TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_548783
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C16580T C20669T A23403G G25690T C27538T GGG28881AAC CGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29733-

EPI_ISL_548784
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T G3971T G5008T C6578T C14408T A19812G A23403G G25563T G28368A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548786
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01164/2020
 ATTAAAGGTT1- C241T C1059T C3037T C13297T C14408T C14937T C21304A A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548787
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C13297T C14408T C14937T C21304A A23403G G24882A G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548788
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C13297T C14408T C14937T C21304A A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548789
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C13297T C14408T C14937T C21304A A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548790
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C13297T C14408T C14937T C21304A A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548791
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C13297T C14408T C14937T C21304A A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548792
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C13297T C14408T C14937T C21304A A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548793
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C13297T C14408T C14937T C21304A A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548794
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G2458K C3037T C13297T C14408T C14937T C21304A A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548795
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C13297T C14408T C14937T C20483Y C21304A A23403G G25563T G25906T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548798
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C13297T C14408T C14937T C21304A A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548799
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01177/2020
 ATTAA1- C241T C3037T C14408T A23403G C27538T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_548800
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01178/2020
 ATTAA1- C241T C2399T C3037T G4300T C10702T C11200T C14408T C22227T G22468T A23403G C26013T C27247T C28093T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548801
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1348T T2049C C2416T C2919T C3037T A13396G C14408T A19134G A23403G G25563T C28377T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548802
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01180/2020
 ATTAAAGGTT1- G105T C241T A1423G C2416T C3037T C14408T A23403G G25563T C25587T C25658T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548803
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01181/2020
 ATTAAAGGTTTA1- C241T T1116C G2782T C3037T C10594T C14408T C19862T A23403G A25067C T27299C G28396A C28603T GGG28881AAC T29148C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548804
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01182/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T C15280T A21583G A23403G A25491G G25563T G28368A C28748T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548805
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01183/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T G3971T G5008T C6578T C14408T A19812G A23403G G25563T G28368A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548806
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11417T G13793A C14408T C18526T T19839C C21914T A23403G A23756G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548807
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C15280T A21583G A23403G A25491G G25563T G28368A C28748T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_548809
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C1779T A2172G C3037T C14408T C14724T T16479C A21137G A23403G GGG28881AAC G29781T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548810
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T1216C C3037T C5986T C7834T C14408T C21575T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548811
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T1216C C3037T C5986T C7834T C14408T C21575T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548813
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C1779T G2086T C3037T T4030A T7813C C12102T C14408T C14724T C14760T A23403G T26023Y GGG28881AAC G29781T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548814
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01192/2020
 ATTAAAGGTTTATACCT1- C241T C2399T C3037T G10324T C14408T A23403G C26801T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548815
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01193/2020
 ATTAAAGGTTTATACCT1- C241T C2399T C3037T G10324T C14408T A23403G C26801T GGG28881AAC G29825T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548816
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2399T C3037T G10324T C14408T A23403G C26801T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548817
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C632T C1059T C3037T C14408T C15280T C18029T A23403G A25491G G25563T G28368A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548818
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C3773T C7086T G11083T T14191C C14408T C16260T A23403G G23900C A24253T G25563T C28724A C28821A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548819
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C13176T C14408T T16239A A23403G G25563T G28280T G28368A G29321T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548820
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T G28280T G28368A T28444Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548821
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C16260T A23403G G23900C A24253T G25563T C28724A C28821A TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_548822
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548823
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01201/2020
 ATTAAAGGTTT1- C241T C1059T C1190T C3037T C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548824
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T C8106T C14408T T21414C A23403G G25563T G26152K G26526T T27280G G28368A T28711C C29675T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548825
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01203/2020
 ATTAAA1- C241T C1059T C1190T C3037T C8106T C14408T A23403G G25563T C25728T G26526T G28368A C28849T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548826
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01204/2020
 ATT1- C241T C1059T C1190T C3037T C4886T C5144T C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548827
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T C8106T C14408T T21414C A23403G G25563T G26526T T27280G G28368A T28711C C29675T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548828
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T C7926T C8106T C8290T A10159T C14408T A23403G G25563T G26526T T27280G G28368A T28711C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548829
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01207/2020
 ATTAAAGGTT1- C241T C1059T C1190T C3037T C8106T C14408T A23403G T25496C G25563T G26526T G28368A C28849T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548830
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T C4754A C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C C29769T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548831
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C1190T C3037T C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548832
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1190T C3037T C5144Y C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548833
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C C29409Y CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548834
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C1454T C3037T C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548835
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1190T C3037T C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548836
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1190T C3037T C8106T C14408T C22675T A23403G G25563T G26526T T27280G G28368A T28711C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548837
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548838
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T C8106T C14408T T21414C A23403G G25563T G26526T T27280G G28368A T28711C C29675T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548839
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1190T C3037T C8106T G11083T C14408T T21414C A23403G G25563T G26526T T27280G G28368A T28711C C29675T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548840
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01218/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C1190T C3037T C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548841
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T C8106T C14408T G17815A T21414C A23403G G25563T G26526T T27280G G28368A T28711C C29675T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548842
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T C8106T C14408T A23403G G25563T G26526T G28368A C28849T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548843
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1190T C3037T C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548844
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T C8106T C14408T A23403G G25563T G26526T G28368A C28849T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548845
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T C8106T C14408T C22450T A23403G G25563T G26526T T27280G G28368A T28711C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548846
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1190T C3037T C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548847
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T GTT521- C1059T C1190T C3037T C5826T T7045C C8106T C9940T C14408T A23403G C25160T G25563T G26526T T27280G G28368A T28711C GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548848
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1190T C3037T C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548849
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C8106T C14408T A23403G G25563T G26526T G28368A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548850
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C1190T C3037T C8106T C14408T T21414C A23403G G25563T G26526T T27280G G28368A T28711C A29397R C29675T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548852
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T C8106T C14408T A23403G G25563T G26526T T27280G C27431T G28368A T28711C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548853
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1190T C3037T C8106T C14408T T21414C A23403G G25563T G26526T T27280G G28368A T28711C C29675T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_548854
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T T4325C C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_548855
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T C8106T C14408T A23403G G25563T G26526T T27280G G28368A T28711C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548856
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1190T C3037T C8106T C14408T T21414C A23403G G25563T G26526T T27280G G28368A T28711C C29675T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_548858
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C13297T C14408T C14937T C21304A A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548859
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C13297T C14408T C14937T C21304A A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548860
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T G2229R C3037T C13297T C14408T C14937T C21304A A23403G G25563T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548861
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C13297T C14408T C14937T C21304A A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548862
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01240/2020
 ATTAAAGGTT1- C241T C1059T C3037T C13297T C14408T C14937T C21304A A23403G G25563T G25906T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548864
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T C13297T C14408T C14937T C21304A A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548865
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C13297T C14408T C14937T C21304A A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548868
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2399T C3037T C4113T C8964Y C14408T A23403G C26013T C27247T GGG28881AAC G29422T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548869
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2399T C3037T C14408T A23403G C26013T C27247T GGG28881AAC G29422T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548870
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2399T C3037T C14408T A23403G C26013T C27247T GGG28881AAC G29422T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548871
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C874T C1059T C2334T C3037T C5583T C5884T G9479T C14408T A23403G C24442T G25563T G28368A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548874
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T G11083K C14408T G22240K A23403G G25563T G28280T G28368A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548876
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2399T C3037T C14408T A23403G C26013T C27247T GGG28881AAC G29422T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548878
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T AAGTCATTT686- T1116C C3037T C14408T A23403G T27299C G28396A GGG28881AAC T29148C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548879
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C6270T C14408T A21169G A23403G A26927G C27247T G28077T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548884
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A18931G C19097T A23403G G29332T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548886
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01280/2020
 ATTAAAGGT1- C241T C874T C1059T C1734T C2334T C3037T C5583T G9479T C14408T A23403G C23481T C24442T G25563T G28368A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_548887
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T T18209C C18804T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548888
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01283/2020
 ATTAA1- C241T C874T C1059T C1734T C2334T C3037T C5583T G9479T C14408T A23403G C23481T C24442T G25563T G28368A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548889
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01284/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T T16008Y T18209C C18804T A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548890
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2399T C3037T G10324T C14408T T17865C A23403G C26801T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548894
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G167K C241T G674A C2416T C2919T C3037T C14408T C20844T A23403G C25452T G25563T C29738T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548895
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T T18209C C18804T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548896
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2106T C3037T T4804Y G8131T A8252C C13667T C14408T A23403G A23973C G25563T G28083T G28368A T29710A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548899
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11916T C13554Y T13731Y C14408T C16859T C17502T C18998T A23403G G25323K G25563T GAATGGCTG28899- G29540A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548900
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2399T C3037T C8733T G10870T T11092C C14408T A23403G C26013T C27247T GGG28881AAC G29422T G29711T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548901
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C1779T C3037T A3709G C6070Y C14408T C14724T A23403G C26110T GGG28881AAC G29781T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548902
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C15280T C18029T A23403G A25491G G25563T G28368A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548903
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T G28368A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548904
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2399T C3037T G4300T C10702T C11200T C14408T C22227T G22468T A23403G C26013T C27247T C28093T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548905
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2399T C3037T C8733T G10870T T11092C C14408T A23403G C26013T C27247T GGG28881AAC G29422T G29711T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548906
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2399T C3037T C8733T C14408T T21527Y A23403G C26013T C27247T GGG28881AAC G29422T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548908
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01305/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C874T C1059T C1734T C2334T C3037T C5583T G9479T C14408T C19554Y A23403G C23481T C24442T G25563T G28368A GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548911
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T A22310G G23401T A23403G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548914
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2399T C3037T C8733T G10870T T11092C C14408T A23403G C26013T C27247T GGG28881AAC G29422T G29711T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548915
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C2508T C3037T T8473C C8818T C9603T G11083T C14408T C17678T C22295T A23403G C23609T C27294T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548917
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2399T C3037T C14408T G22093R A23403G C26013T C27247T GGG28881AAC G29422T A29617G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548918
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C15280T A21583G A23403G A25491G G25563T G28368A C28748T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548919
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G10282T C13647T C14408T A23403G C27538T GGG28881AAC CGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29741-

EPI_ISL_548920
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6270T C14408T A23403G A26927G G28077T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548921
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C12534T C13297T C14408T C21304A A23403G G25563T G29348A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548922
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3373A C9733T C10279T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548923
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C13297T C14408T C21304A A23403G G25563T G29348A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548925
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2399T C3037T C14408T A23403G C26013T C27247T GGG28881AAC G29422T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548926
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01323/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2399T C3037T C8733T C14408T C19170T A23403G C26013T C27247T GGG28881AAC G29422T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548927
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2399T C3037T C14408T A23403G C26013T C27247T C27625Y GGG28881AAC G29422T C29614T A29617G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548928
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01325/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C6270T C14408T A23403G A26927G G28077T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548929
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2399T C3037T C14408T A23403G C26013T C27247T GGG28881AAC G29422T A29617G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_548930
 2020-06-xx 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-01327/2020
 ATTAAAGGTTTA1- C19T C241T C313T C1779T A2172G C3037T C14408T C14724T T16479C A21137G A23403G GGG28881AAC G29781T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

LC573273
 2020-06-xx 2020-07-30
 Japan TKYE618765_2020
 ATTAAAGGTTTA1- C241T C313T C3037T C12778T C14408T A23403G C26270T G26840A GGG28881AAC G28975T

LC573274
 2020-06-xx 2020-07-30
 Japan TKYE618795_2020
 ATTAAAGGTTTATACC1- C241T C313T C3037T C12778T C14408T A23403G G26840A GGG28881AAC G28975T

LC573275
 2020-06-xx 2020-07-30
 Japan TKYE618796_2020
 ATTAAAGGTTTATAC1- C241T C313T C3037T C12778T C14408T A23403G G26840A GGG28881AAC G28975T

LC573276
 2020-06-xx 2020-07-30
 Japan TKYE618928_2020
 ATTAAAGGTTTATAC1- C241T C313T C3037T T4346C C9286T C10376T C14408T C14708T T22020C A23403G C28725T GGG28881AAC G29692T

LC573277
 2020-06-xx 2020-07-30
 Japan TKYE618929_2020
 ATTAAAGGTTTATA1- C241T C313T C3037T T4346C C9286T C10376T C14408T C14708T T22020C A23403G C28725T GGG28881AAC G29692T

LC573278
 2020-06-xx 2020-07-30
 Japan TKYE618930_2020
 ATTAAAGGTTT1- C241T C313T C3037T T4346C C9286T C10376T C14408T C14708T T22020C A23403G C28725T GGG28881AAC G29692T

LC573279
 2020-06-xx 2020-07-30
 Japan TKYE618937_2020
 ATTAAAGGTTTATAC1- C241T C313T C3037T T4346C A5040G C9286T C10376T C14408T C14708T A23403G C28725T GGG28881AAC G29692T

LC573280
 2020-06-xx 2020-07-30
 Japan TKYE618735_2020
 ATTAAAGGTTTATACCT1- C241T C313T C3037T C12778T C14408T A23403G G26840A GGG28881AAC G28975T

LC573281
 2020-06-xx 2020-07-30
 Japan TKYE618727_2020
 ATTAAAGGTTTATAC1- C241T C313T C3037T C12778T C14408T C14676T A23403G G26840A GGG28881AAC G28975T

LC573282
 2020-06-xx 2020-07-30
 Japan TKYE618749_2020
 C241T C313T C3037T T4346C C9286T C10376T C14408T C14708T T22020C A23403G C28725T GGG28881AAC G29692T

LC573283
 2020-06-xx 2020-07-30
 Japan TKYE618779_2020
 ATTAAAGGTTTA1- C241T C313T C3037T T4346C C7728T C9286T C10376T C14408T C14708T A18529T A23403G C28725T GGG28881AAC G29692T

LC573284
 2020-06-xx 2020-07-30
 Japan TKYE620226_2020
 ATTAAAGGTTTAT1- C241T C313T C3037T C8917T C14408T C18167T G21518T A23403G GGG28881AAC G28975T

LC573285
 2020-06-xx 2020-07-30
 Japan TKYE620228_2020
 ATTAAAGGTTTA1- C241T C313T C3037T C8917T C14408T C18167T G21518T A23403G GGG28881AAC G28975T

LC573286
 2020-06-xx 2020-07-30
 Japan TKYE620260_2020
 ATTAAA1- C241T C313T C3037T C7417T C8917T C14408T C18167T G21518T A23403G GGG28881AAC G28975T

MT952631
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0743/2020
 ATTAAAGGTTTA1- C241T C1059T A2581C C3037T G6422A C14408T C16260T A23403G C25317T G25563T G26690T C28821A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT952632
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0746/2020
 ATTAAAGG1- C241T C1059T C3037T G6422A C14408T C16260T T19345W A23403G C25317T G25563T G26690T C28821A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MT952633
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A35C C37G C241T C1059T C3037T G6422A C14408T C16260T A19298C T19541A A23403G C25317T G25563T G26690T T27956G C28821A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT952634
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0749/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G6422A C14408T C15738T C16260T A23403G C25317T G25563T G26690T C28821A C29870A

MT952635
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0750/2020
 ATTA1- C241T C1059T C3037T G6422A C14408T C16260T A23403G C25317T G25563T G26690T T27956G C28821A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MT952636
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0752/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C9561T C14408T T22213C A23403G G25563T C25658T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT952637
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C14408T T22213C A23403G G25563T C25658T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

MT952644
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T6294C C8664A G8851A T12383C C14408T A23403G C25350T A25505C C26521T GGG28881AAC G29427T G29868A C29870A

MT952645
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T6294C C8664A G8851A T12383C C14408T A23403G C25350T A25505C C26521T GGG28881AAC G29427T C29870A

MT952647
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2585R C3037T T6294C C8664A G8851A T12383C C14408T A23403G C25350T A25505C C26521T GGG28881AAC G29427T C29870A

MT952648
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T6294C C8664A G8851A T12383C C14408T A23403G C25350T A25505C C26521T GGG28881AAC G29427T A29865G AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

MT952649
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T6294C C8664A G8851A T12383C C14408T A23403G C25350T A25505C C26521T GGG28881AAC G29427T C29870M

MT952650
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0766/2020
 ATTA1- C241T C1059T C3037T C10319T C14408T A18211C G19086T C20759T A23403G G25177T G25563T C27964T A29143C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT952651
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T C10319T C14408T A18211C G19086T C20759T A23403G G25177T G25563T C27964T A29143C C29870A

MT952654
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0771/2020
 ATTAAAG1- C241T C1059T C3037T C10319T C14408T A18211C G19086T C20759T A23403G G25177T G25563T C27964T A29143C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT952655
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0772/2020
 C241T C1059T C3037T C10319T C14408T A18211C G19086T C20759T A23403G G25177T G25563T C27964T A29143C

MT952656
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0773/2020
 A1C C241T C829T C1059T C3037T G6422A C14408T C16260T A23403G C25317T G25563T G26690T C28821A C29077T

MT952665
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0777/2020
 A1- C241T C1059T C3037T C14408T A18280G A23403G G25563T C25658T A29878M

MT952666
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0778/2020
 C241T C1059T C3037T C14408T A18280G A23403G G25563T C25658T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT952667
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0779/2020
 ATTAAA1- C241T C1059T C3037T C14408T A18280G A23403G G25563T C25658T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT952668
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0780/2020
 AT1- C241T C1059T C3037T C14408T A18280G A23403G G25563T C25658T

MT952677
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-1009/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C14408T C16260T A23403G G25563T G26439T G26690T C28744T C28821A

MT952678
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-1011/2020
 ATTA1- C241T AAGTCATTT686- C1059T C3037T C4321A C13432T C14408T T17531C C18687T G20980A C22480T A23403G G25563T C29870A

MT952680
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-1016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1684T C3037T C14408T A19302W A23403G C24034T G25429A G25563T C29870A

MT952687
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-1025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T AAAATT6518- C14408T C16575T A23403G G25538A G25563T G29449T C29870A

MT952688
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-1027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T1675C C1912T C3037T C10313T C14408T A23403G C23833T G25563T C28887T C29870A

MT952690
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-1033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G260A C3037T A6657C C14408T C17104T C18877T A23403G C24358T C25276T G25563T G28851T

MT952691
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-1034/2020
 AT1- C241T C1059T C3037T C9430T C14408T C14925T C16946T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT952692
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-1035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C1059T C3037T G5230T C14408T A23403G G25563T C26151T T26302C T27242C G29810T C29870A

MT952695
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-1039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C4113T C10449T C11916T C14408T C15588T C18998T A23403G G25563T G29540A C29870A

MT952696
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-1040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T AAAATT6518- C14408T C16575T A23403G G25538A G25563T G29449T C29870A

MT952698
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-1044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A3133C C14408T T15096C A23403G C25517T G25563T C26873T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT952701
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-1047/2020
 ATTAAAGGTTT1- C241T C1059T C3037T T3172C G11083T C14134T C14408T G21624C A23403G G25563T C25693T T27384C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT952702
 2020-06-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-1048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T9172C A10948G C14408T A23403G C25553T C26527T G26730T G28287A GGG28881AAC

MT981449
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A4364C C6040T A13712G C14408T G21641T A23403G G25563T G29868A C29870A

MT981450
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1056/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C14408T A23403G G25563T T27733C C29870A

MT981451
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- A34G C241T C1059T C1917T C3037T C14408T A23403G G25563T C29870A

MT981452
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1060/2020
 AT1-G C241T C3037T T9172C A10948G C14408T A23403G C24130T G26730T C27879T GGG28881AAC C29578A

MT981453
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1061/2020
 AT1- C241T C1059T G1085T C3037T A3245G G3340T C14408T G18583T A23403G G25563T C27752T

MT981454
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1064/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G5253A C10319T C14408T C15197T A20183G A23403G G25563T G25855T C27092T T27692C C27964T C28849T G28851T

MT981455
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1067/2020
 ATTAAAG1- T10G C241T C3037T T6294C C8664A G8851A C14408T C21711T A23403G T23716C A25505C G28077T GGG28881AAC C29870A

MT981456
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1071/2020
 ATTA1- C241T C1059T C3037T T5925C G6422A C14408T C16260T A23403G C25317T G25563T G26690T C28821A C29870A

MT981457
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1404T C3037T T6294C C8664A G8851A C14408T A23403G T23716C A25505C G28077T GGG28881AAC C29870A

MT981459
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C635T C1059T C3037T G3403T C14408T A23403G G25563T C26151T T26302C G29868A C29870A

MT981460
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1076/2020
 ATTAAAGGTT1- C241T AAGTCATTT686- C1059T C3037T C4230A C14408T T16977C A23403G C23430T A23985G C24198T C25318T G25563T

MT981461
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T AAGTCATTT686- C3037T T3529C C8664A G8851A G11083T C14408T A23403G A25505C G26779T GGG28881AAC C29870M

MT981462
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T9172C C10623T A10948G C14408T A23403G A26612T G26730T C27059T GGG28881AAC

MT981463
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1084/2020
 ATTA1- C241T G640A A2127G C3037T C3397T C14408T C15933T G16968T T19839C A23403G GGG28881AAC C29784T C29870A

MT981464
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T T6691C C14408T A23403G G25563T C25614T G29736T C29870A

MT981466
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C619T C1059T C2523T C3037T C14408T A14912G C18864T A23403G G25563T C26447T G29868A C29870A

MT981467
 2020-06-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T T6905G C13994T C14408T C17518T G21468T G21724T G23120T A23403G G25563T C25667T C27603T C27654T C29870A

EPI_ISL_479777
 2020-07-01 2020-07-01
 United Kingdom hCoV-19/England/NP1/2020
 A2480G C2558T G11083T C14805T G26144T

EPI_ISL_479778
 2020-07-01 2020-07-01
 United Kingdom hCoV-19/England/NP2/2020
 AT1- C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_479779
 2020-07-01 2020-07-01
 United Kingdom hCoV-19/England/NP3/2020
 ATTAAAGGTTTATACCTTCCCAGG1- A2480G C2558T CGTGTTTGTACTAATTATATGCCTTATTTCTTTACTTTATTGCTACAATTGTGTACTTTTACTAGAAGTACAAATTCTAGAATTAAAGCATCTATGCCGACTACTATAGCAAAGAATACTGTTAAGAGTGTCGGTAAATTTTGTCTAGAGGCTTCATTTAATTATTTGAAGTCACCTAATTTTTCTAAACTGATAAATATTATAA6752- G11083T C14805T A15847T G26144T

EPI_ISL_479780
 2020-07-01 2020-07-01
 United Kingdom hCoV-19/England/NP4/2020
 A1- C241T C3037T C9438T C10776T C14408T A23403G GGG28881AAC

EPI_ISL_479781
 2020-07-01 2020-07-01
 United Kingdom hCoV-19/England/NP5/2020
 AT1- C241T C3037T C14408T A23403G A26530G

EPI_ISL_479782
 2020-07-01 2020-07-01
 United Kingdom hCoV-19/England/NP6/2020
 C241T C2445T C3037T C14408T C20031A A23403G C27046T GGG28881AAC

EPI_ISL_479783
 2020-07-01 2020-07-01
 United Kingdom hCoV-19/England/NP7/2020
 C241T C3037T C3096T C14408T C16289T C16308T A19671G A23403G G25429T

EPI_ISL_479784
 2020-07-01 2020-07-01
 United Kingdom hCoV-19/England/NP8/2020
 ATTAAAGGTTTATACC1- C241T G376T C3037T C14408T A23403G A26530G T28098C

EPI_ISL_479785
 2020-07-01 2020-07-01
 United Kingdom hCoV-19/England/P1/2020
 ATTAAAGGTTTATACC1- C241T C3037T C3373A C3923A C11195T C14408T A23403G GGG28881AAC

EPI_ISL_479786
 2020-07-01 2020-07-01
 United Kingdom hCoV-19/England/P2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- ATG1605- C17898T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_479787
 2020-07-01 2020-07-01
 United Kingdom hCoV-19/England/P3/2020
 ATTAAAGGTTTATACCTTCCC1- C241T TGGTCATGTTATGGT508- C3037T C5575T A5991G C13329T C14408T A23403G C27641T GGG28881AAC

EPI_ISL_479788
 2020-07-01 2020-07-01
 United Kingdom hCoV-19/England/P4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G660A ATG1605- A4574G C13517T T14217C C17898T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_479789
 2020-07-01 2020-07-01
 United Kingdom hCoV-19/England/P5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T CACGCAAATTAATGCCTGTCTGTGTGG4419- TTCAACTATACAGCGTAAATATAAGGGTATTA4462- C14408T C17430T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_486842
 2020-07-01 2020-07-11
 Ecuador hCoV-19/Ecuador/USFQ-105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_486843
 2020-07-01 2020-07-11
 Ecuador hCoV-19/Ecuador/USFQ-108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_486844
 2020-07-01 2020-07-11
 Ecuador hCoV-19/Ecuador/USFQ-109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9172C A10948G C14408T A23403G G26730T GGG28881AAC AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_487329
 2020-07-01 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0386/2020
 AT1- C241T C3037T T7012A C14408T C19402T A23403G G28326T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_487332
 2020-07-01 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C4002T G10097A C11195T C13536T C14408T G17592T C19983T G22017T A23403G C23731T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_487338
 2020-07-01 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0395/2020
 ATTA1- C241T C3037T C4002T T8323C G10097A C13536T T14345C C14408T G18292T T21333C A23403G C23731T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_487340
 2020-07-01 2020-07-14
 South Africa hCoV-19/South Africa/KRISP-0397/2020
 AT1- C241T A939G C3037T T4351C C4999T C14408T A23403G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_489897
 2020-07-01 2020-07-14
 United States hCoV-19/USA/IA-GMF-08792/2020
 ATTAAAGGTTTATACCTTCCCAGG1- CG197GT C241T T2845C C3037T A6391C C6500T C14408T A20268G G22014T A23403G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489898
 2020-07-01 2020-07-14
 United States hCoV-19/USA/IA-GMF-08809/2020
 ATTAAAGGTTTATACCTTCCCA1- CG197GT C241T T2845C C3037T A6391C C6500T C14408T A20268G G22014T A23403G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489934
 2020-07-01 2020-07-14
 United States hCoV-19/USA/WI-GMF-08700/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C715T C1059T C1473T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489936
 2020-07-01 2020-07-14
 United States hCoV-19/USA/WI-GMF-08766/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T G1550A C3037T A5718T C14408T C15240T A19899T A21464G A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489973 LR861672
 2020-07-01 2020-07-14
 Switzerland 180031
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G5950K G10097R C13536T C14408T G19732T T21075W A23403G C23731T C24082Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489974 LR861487
 2020-07-01 2020-07-14
 Switzerland 180032
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3169Y C4002Y G5950K C6267Y T6909Y C7299Y T9961Y G10265A G10396K G12052K C13536Y C14408T A15972R C16178Y T17675Y G19648K C19718Y G19732K A23403G C23731Y C24082Y A25492R G27659S T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489975 LR861492
 2020-07-01 2020-07-14
 Switzerland 180037
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G5950K G10097R C13536T C14408T G19732T A23403G C23731T C24082Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489976 LR861671
 2020-07-01 2020-07-14
 Switzerland 180038
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6525T G6981R T7021Y G9130T C14408T A23403G T27319C G28487A C28868T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489977 LR861669
 2020-07-01 2020-07-14
 Switzerland 180039
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C1912T T3035Y C3037Y C3096Y T3144K G7328K C9286T C10252T G13201R C14178T C14408T C19763T A23403G GGG28881AAC C29835T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_490327
 2020-07-01 2020-07-15
 United Kingdom hCoV-19/England/CAMB-1B5458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T A4624G A6132G C11902T C14408T C18877T A23403G G24197T G24757T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490328
 2020-07-01 2020-07-15
 United Kingdom hCoV-19/England/CAMB-1B5476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T A4624G C11902T C14408T C18877T A23403G G24197T G24757T G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490329
 2020-07-01 2020-07-15
 United Kingdom hCoV-19/England/CAMB-1B54A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1620G C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491374 MT772472
 2020-07-01 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491396
 2020-07-01 2020-07-16
 United States hCoV-19/USA/WI-UW-721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CGGTTTCGTCCGT197- C241T T2845C C2939T C3037T C6500T C14408T A20268G G22014T A23403G C27577T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491403 MT772500
 2020-07-01 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491408 MT772505
 2020-07-01 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C4331T C5672T A7837C C14408T G19677T A23403G C25276T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491409 MT772506
 2020-07-01 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C A5553G C7823T C11074T C14408T G21438T A23403G C25710T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491418 MT772516
 2020-07-01 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C25276T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493608
 2020-07-01 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112CCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493669
 2020-07-01 2020-07-21
 United Kingdom hCoV-19/England/SHEF-C17D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8717T T9292C A11386G C14408T C21637T A23403G A28169G GGG28881AAC A29565G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495546
 2020-07-01 2020-07-23
 South Africa hCoV-19/SouthAfrica/KRISP-0426/2020
 ATTAAAGGTTTATACCTTC1- C241T C1437T C3037T C6762T T12503C C14408T C23320T A23403G G25455T G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_497809
 2020-07-01 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1977T T2125C C3037T C6190T G10610A A10761G C14408T T17531C C23347T A23403G G28001T G28077T G28209T G29747T G29773T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498055
 2020-07-01 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T C22388T A23403G C23625T G25523T G28325A C28344T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_498559
 2020-07-01 2020-07-27
 Italy hCoV-19/Italy/FVG-ICGEB_S211/2020
 C241T C3037T C6267T T9961C G10265A G12052T C13551T T13668C C14177T C14408T C16178T G18498T G19648T C19718T A23403G A25492G A26057G T28759C GGG28881AAC

EPI_ISL_498561
 2020-07-01 2020-07-27
 Italy hCoV-19/Italy/FVG-ICGEB_S214/2020
 C241T C3037T C6267T T9961C G10265A G12052T C13551T C14408T A15972G C16178T G18498T G19648T C19718T A23403G G23824A A25492G A26057G T28759C GGG28881AAC

EPI_ISL_498568
 2020-07-01 2020-07-27
 Singapore hCoV-19/Singapore/670/2020
 ATTAA1- T239Y C4893T C6310A C6312A A8547R G11083T A11228G C13730T C19524T C23185T C23929T A24915T T25646C C28311T AAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29813-

EPI_ISL_499691
 2020-07-01 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A61CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G G25617T GGG28881AAC C29870A

EPI_ISL_500561
 2020-07-01 2020-07-29
 Singapore hCoV-19/Singapore/747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3569G C6310A C6312A A9419G G11083T C13730T C19524T C23929T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501083
 2020-07-01 2020-07-30
 United States hCoV-19/USA/OR-UW-13394/2020
 ATTAA1- C241T C1059T C3037T C14408T G17572T C20946T G21004T C22097T A23403G C24337T G25563T C26900T G28068T G29751T G29864A TG29867AA C29870A -29904AAAA

EPI_ISL_501118
 2020-07-01 2020-07-30
 United States hCoV-19/USA/WA-UW-13028/2020
 ATTAAAGGTTTA1- A31T AAC34TTT C241T C1059T T1927C C3037T C10319T C14408T A18424G C21304T A22255T A23403G G25563T G25907T T25975C C27964T C28472T C28869T

EPI_ISL_501120
 2020-07-01 2020-07-30
 United States hCoV-19/USA/WA-UW-13226/2020
 ATTAA1- AAC34TTT C241T T1837C C3037T A4197G C6726T G12251A C14408T G16813A A17056G C21297T A23403G T25783C GGG28881AAC -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501124
 2020-07-01 2020-07-30
 United States hCoV-19/USA/WA-UW-13242/2020
 ATTA1- A31T AAC34TTT C241T C3037T G4510T C14408T C15933T C19017T T19839C C21139T T22690C A23403G T25451C G27281T GGG28881AAC G29402T C29784T G29862A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501141
 2020-07-01 2020-07-30
 United States hCoV-19/USA/WA-UW-13356/2020
 ATTAA1- A6K TTTATACCTTCC9- C21A AAC34TTT C241T C1059T T1927C C3037T A10269G C10319T TA14222GC C14408T A18424G C21304T A22255T A23403G G25563T G25907T G26550A C27964T C28472T C28869T TG29867AA C29870A -29904AAAA

EPI_ISL_501143
 2020-07-01 2020-07-30
 United States hCoV-19/USA/WA-UW-13364/2020
 ATTAAAGGTTT1- C241T C1059T T1927C C3037T C10319T TA14222GC C14408T A18424G T21146A C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T G29736T G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501144
 2020-07-01 2020-07-30
 United States hCoV-19/USA/WA-UW-13366/2020
 ATTAAAGGTTTATA1- TC18GG A31T C36T C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T

EPI_ISL_501145
 2020-07-01 2020-07-30
 United States hCoV-19/USA/WA-UW-13367/2020
 ATTAAAGGTTTATA1- TCCC18GGGA C241T C3037T A4229C T8883C TT8885AA T10554D C13490V C13492B AGG13512TTA TA14222GC C14408T AA17697GD C18395T T19839C T21146D A23403G GGG28881AAC G29862A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_507958
 2020-07-01 2020-08-03
 United States hCoV-19/USA/MN-MDH-1370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509253
 2020-07-01 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000600/2020
 C241T C3037T C6762T A9439G T12503C C14408T C16616T A23403G G25770T GGG28881AAC C29721T T29760C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_509255
 2020-07-01 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000602/2020
 AT1- C241T C3037T C6762T A9439G T11092C T12503C C14408T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509257
 2020-07-01 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000604/2020
 AT1- C241T C3037T C4002T T5653C G10097A C13536T C14408T C18747T A23403G C23731T GGG28881AAC G29425T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509263
 2020-07-01 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000611/2020
 ATTAAAGGTTTATACC1- C241T C3037T C6762T A9439G T11092C T12503C C14408T A23403G G25770T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509264
 2020-07-01 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000612/2020
 C241T C3037T C6762T A9439G T12503C C14408T G14854T T17007C A23403G G25455T C25521T G25770T GGG28881AAC C29721T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_509269
 2020-07-01 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000617/2020
 AT1- C241T C3037T C6762T T12503C C14408T G21724T A23403G G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509316
 2020-07-01 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001059/2020
 ATTA1- C241T C2388T C3037T C6794T C10252T G11417T A13922G C14408T A23403G C25614T GGG28881AAC G29702A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509322
 2020-07-01 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001066/2020
 ATTA1- C241T C2388T C3037T C6794T C10252T G11417T A13922G C14408T A23403G C25614T GGG28881AAC G29702A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509334
 2020-07-01 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C140T C241T C3037T C14408T A18082G A23403G C24919T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509855 MT846539
 2020-07-01 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T C21431T A23403G G24199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515005
 2020-07-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2602/2020
 ATTAAA1- C241T C1059T C3037T C11916T C13968T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAA29893-

EPI_ISL_515006
 2020-07-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2603/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29212T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_515008
 2020-07-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2605/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C27643T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_515009
 2020-07-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2606/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C27643T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_515010
 2020-07-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2607/2020
 ATTAAAGGT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_515011
 2020-07-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2608/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C27643T G28374A G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_515013
 2020-07-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2610/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T G10870T C11916T C14408T C16650T T20328C A20675T A23403G G25563T C27643T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_515014
 2020-07-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2611/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C27643T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_515015
 2020-07-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2612/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G28368A G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_515016
 2020-07-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2613/2020
 ATTAAA1- C241T C1059T C3037T G4682A C11916T C14408T C16650T A20675T T21072C A23403G G25563T C27643T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_515017
 2020-07-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2614/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_515018
 2020-07-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2615/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C27643T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_515019
 2020-07-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2616/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_515020
 2020-07-01 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2617/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_515832
 2020-07-01 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001347/2020
 ATTAAAGGTT1- C241T C3037T G11447A C14408T C22675T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515833
 2020-07-01 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001348/2020
 ATTAAAGGTTTATACC1- C241T T1863A C3037T C14408T A20268G G21586T A23403G G26144A C29535T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515836
 2020-07-01 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C5832T C6762T G11417T T12503C C14408T A23098G A23403G G25455T G25770T T26651C GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515838
 2020-07-01 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001353/2020
 C241T C3037T C4002T C7299T G10097A T10721A C13536T C14408T G15543T A23403G C23731T C26177T C26204T C28054T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515839
 2020-07-01 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001354/2020
 ATTAA1- C241T G376A C3037T A7064G C14408T C22675T C22687G A23403G C25521T C26586T T27384C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_516764
 2020-07-01 2020-08-22
 United States hCoV-19/USA/SC-20-1418-T07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T A7993G C8139T C10376T C14408T T22287C A23403G A25336T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_517801 MT966155
 2020-07-01 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0911/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A363G C900T C3037T C14408T T22843C A23403G C25710T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_517802 MT966156
 2020-07-01 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0912/2020
 ATTAAAGGTTTATACC1- C241T C379A C1059T T2153C C2268T C3037T G4657A G6503A G7393T C8950T G11851A C14408T G21578T A23403G G25563T C25703T G28842T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_517803 MT966157
 2020-07-01 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0913/2020
 ATT1- C241T C1059T C3037T A7981G C9967T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518050
 2020-07-01 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002467/2020
 ATTAAAGGT1- C241T A939G C3037T C12525T C14408T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_520179 MT971406
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5417/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520745 MT972433
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3031/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520746 MT972434
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_520747 MT972435
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3033/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520906 MT972493
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520907 MT972494
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3224/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_520908 MT972495
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25249C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521456 MT969372
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1707T C3037T G6943T C14408T A23063T A23403G C26984T T28196C C28585T GGG28881AAC

EPI_ISL_521457 MT969373
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521458 MT969374
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521476 MT972331
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2630/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521480 MT972335
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5284T C5884T T14171C C14408T A23403G C23635T G25244T C26060T GGG28881AAC

EPI_ISL_521494 MT972349
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2648/2020
 ATTAAAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521495 MT972350
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2649/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521496 MT972351
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521497 MT972352
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C16470T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521498 MT972353
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18652T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521500 MT972355
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18814T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521505 MT972360
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2659/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521507 MT972362
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521516 MT972370
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1707T C3037T G6943T C14408T A23063T A23403G C26984T T28196C C28585T GGG28881AAC

EPI_ISL_521527 MT972381
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521528 MT972382
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521631 MT969532
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521632 MT969533
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2801/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T C3045T T7540C C14408T G16647T C18555T C21575T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521636 MT969537
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521638 MT969539
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521639 MT969540
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1060T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24054T GGG28881AAC

EPI_ISL_521640 MT969541
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G G28350T GGG28881AAC

EPI_ISL_521641 MT969542
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4795T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521644 MT969545
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A3082G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521648 MT969548
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521649 MT969549
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521662 MT969562
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A3082G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521674 MT969574
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A3082G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521733 MT969720
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2902/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521851 MT972425
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3022/2020
 A1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521854 MT972428
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521856 MT972429
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3027/2020
 ATTA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521857 MT972430
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3028/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18400T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521858 MT972431
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G24301A GGG28881AAC

EPI_ISL_521859 MT972432
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522224 MT969521
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A3082G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522228 MT969525
 2020-07-01 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_523610
 2020-07-01 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A A23403G G25523T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523611
 2020-07-01 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C241T T2537G C3037T C3717T G12191T C13647T C14408T C15540T T16479C G23120T A23403G GGG28881AAC C29640T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523659
 2020-07-01 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A A23403G G25523T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_526889
 2020-07-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0775/2020
 ATTA1- C241T C934T G1042A C1059T C3037T C3768T C14408T C14925T A23403G G25563T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_526890
 2020-07-01 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C934T G1042A C1059T C3037T C3768T C14408T C14925T A23403G G25563T C29870A

EPI_ISL_527020
 2020-07-01 2020-09-03
 Australia hCoV-19/Australia/NSW2474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C3037T C6195T C10969T G11083T C14408T T17568C G17679T G20679T A23403G G25785T A26811G C26841T T28098C C28153T GGG28881AAC C29722T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527658 MT967918
 2020-07-01 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6258/2020
 T490A C3177T C6040T C8782T G12478A C12880T T18736C C24034T T26729C G28077C T28144C G28631R C28896G A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527658 MT967918
 2020-07-01 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6258/2020
 T490A C3177T C6040T C8782T G12478A C12880T T18736C C24034T T26729C G28077C T28144C G28631R C28896G A29700G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527659 MT967919
 2020-07-01 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6259/2020
 C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527659 MT967919
 2020-07-01 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6259/2020
 C6312A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528707
 2020-07-01 2020-09-08
 United Arab Emirates hCoV-19/United Arab Emirates/581/2020
 C241T C3037T C10854T C14408T G19872A A20268G A23403G T28031C C28854T G28903T

EPI_ISL_534235
 2020-07-01 2020-09-11
 Sweden hCoV-19/Sweden/20-52288/2020/P1
 G61T C241T C3037T G3774A G12769T C14408T A23403G GGG28881AAC

EPI_ISL_536479
 2020-07-01 2020-09-16
 Peru hCoV-19/Peru/CAL-INS-079/2020
 ATTAAAG1- C241T C3037T A3528C C4586T C8320T C8986T C12781T C14408T A20268G A23403G G26589T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536480
 2020-07-01 2020-09-16
 Peru hCoV-19/Peru/CAL-INS-081/2020
 ATTA1- C241T C3037T C4002T G10097A C13138T C13536T C14408T A21131G A23403G C23731T G25650T C26029A C27213T C27577T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536481
 2020-07-01 2020-09-16
 Peru hCoV-19/Peru/CAL-INS-082/2020
 ATTAAAG1- C241T C3037T C4002T A7903G G10097A C13536T C14408T A23403G C23731T GGG28881AAC G29759T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536496
 2020-07-01 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-097/2020
 ATTAAAG1- C241T C583T C3037T C4002T G10097A C13536T C14408T A17521G A23403G C23731T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_541005
 2020-07-01 2020-09-22
 South korea hCoV-19/South Korea/IHC18670/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C27643T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_541006
 2020-07-01 2020-09-22
 South korea hCoV-19/South Korea/IHC18755/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T C27643T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_542024
 2020-07-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020174489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C5826T T9495C C10279T C14408T C21077T A23403G A25590T GGG28881AAC TG29867AA C29870A

EPI_ISL_542026
 2020-07-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020174730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T T8041C C14408T G22225T A23403G G25563T C28005T C29870A

EPI_ISL_542027
 2020-07-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020174738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T T8041C C14408T G22225T A23403G G25563T C28005T G29868A C29870A

EPI_ISL_545611
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-7740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1495T C3037T T7332C T7831A C14408T A23403G G25563T C27498T G28362C G28845T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545639
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-7799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16741A A20268G T21418C A23403G G24368A G26834T G28109T T28678C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545656
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-7834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1495T C3037T T7332C T7831A A9634T C11379T C14408T A23403G G25563T C25638T G28845T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545664
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-7846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C498T C1059T C3037T A8087C C10319T C14408T C15933T G16622A G20635C A23403G G25563T C27964T G28080A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545673
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-7870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17004T C17639T C17985T G18756T T21967C A23403G C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545679
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-7881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487T C1238T C2232T C3037T A6193C T6808A C14408T G15243T A20268G A23403G CC25162AA G26828T C28311T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545681
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-7885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6304G C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545752
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-7970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A A2568G C3037T C6990T T9742C G11083T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545766
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-7985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16741A A20268G T21418C A23403G G28109T T28678C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545767
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-7986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G C23481T C27575T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545771
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-7990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28179C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545772
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-7991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1593T C3037T C14408T A20055G A23403G G24812T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545777
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-7997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545783
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545787
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5567A C5806T A13278G C14408T A23403G C26270T A28841G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545789
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1800T C3037T G5008T C14408T C19011T C21057T A23403G C25484T C26151T GGG28881AAC G29543C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545790
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17004T C17639T C17985T G18756T T21967C A23403G C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545791
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C G11083T C14408T C17639T C22120T A23403G G28679C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545797
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20474T A23403G C23481T C27575T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545798
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9502T C14408T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545805
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17004T C17639T C17985T G18756T T21967C A23403G C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545807
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545809
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17004T C17639T C17985T G18756T T21967C A23403G C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545811
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4048A C4777T G9479T C9502T T11587C C14408T T20928C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545812
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545816
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C3037T C13446T C14408T C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545818
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1684T C3037T A3580G C14408T C15853T C15952T C16260T C18129T A23403G G25563T C26110T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545819
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545822
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T A23403G G25563T C26455T C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545824
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T T17781C A23403G G29000T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545825
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17004T C17639T C17985T G18756T T21967C A23403G C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545828
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C11752T C14408T C16017T T19284C A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545834
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6198A C12374T C14408T C19011T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545837
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T T11134C C14408T A18535G C19011T A23403G G25819A C26681T T27499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545838
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T A23403G C27046T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545839
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T A3186G C14408T A23403G G25563T C27434T C27964T A29241T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545840
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-8074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G16014T C16260T A23368G A23403G G25563T G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546771
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-7443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16260T C21707T A23403G C23557T G25563T C26447T G26690T C28657T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547015
 2020-07-01 2020-09-24
 United States hCoV-19/USA/TX-HMH-5788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8013T G8591T C10319T C14408T C20656T C21727T A23403G G25563T C27964T C28892T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547671
 2020-07-01 2020-09-24
 United States hCoV-19/USA/WI-GMF-M00020/2020
 ATTAAAGGTTT1- C241T C715T C1059T G2036T C3037T C4686T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547673
 2020-07-01 2020-09-24
 United States hCoV-19/USA/WI-GMF-M00022/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C715T C1059T G2036T C3037T C11173T C11916T C14408T AA21550MW G23311T A23403G A23586G G25563T C25771T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548382
 2020-07-01 2020-09-26
 United States hCoV-19/USA/CA-CZB-3688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGACCGAA1- A290R C3037T C8318A C14408T A20268G C20759T A23403G T24076C C25546T C26461T C28854T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_551744
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-699FBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1946T C3037T A3569G A6211G A8659G C13608Y C14408T T18438C C19488T A23403G C25731T C26681T C28391T GGG28881AAC G29759T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551781
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-696BEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C13247T C14408T C14937T T18144C A23403G C26681T GGG28881AAC G29179T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551833
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-699FEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1946T C3037T A3569G A6211G A8659G C14408T T18438C C19488T A23403G C25731T C26681T C28391T GGG28881AAC G29759T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556080
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C5414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556105
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C6A4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C539T G599A A871G C3037T C3140T C14408T G20931A G23120T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556114
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C6AC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4832T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556120
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C56F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T G4642A G10265A G11083T C14408T A23403G C25614T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556127
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C5872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556167
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C44E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C26801T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556171
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C5748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C25378T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556185
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C7157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556209
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C8C37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G250R G1946K C3037T A3484G C4084T C14408T A20268G A23403G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556210
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C4C2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3717T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A23403G C25889T C26873T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556220
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C753D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1890R C3037T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556227
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-6C3E72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C13329T C14408T A23403G GGG28881AAC C29675T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556238
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C565A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556240
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C43EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408W C3037T C8650T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556254
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C6E9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9744G C14408T C19011T A23403G C25854Y C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556286
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6DBA91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17135T C20936T A23403G G25217T C25350T T25899C G28242K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557045
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D74A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16092T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557357
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-6F2D8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C841T C1714T C2048T C3037T T5092C C8092T A13516G C14408T G18816T G19999T A20268G C20451T A23403G A27675C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557434
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-747E93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC G29227K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557452
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-748418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557561
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71D91D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T C14408T C22224T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557567
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E261B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G C27807T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557572
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-720B8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T T16764C C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557575
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71DACF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557581
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-720416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC C28171T GGG28881AAC A28995G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557583
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71DCF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C4002T C7518T G10097A C13536T C14408T A23403G C23731T G26063T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557593
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71D072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G T26156C A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557597
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-725156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16092T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557603
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71E0EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3738T C4832T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557605
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71CE1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C24700A C28854T C29545T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557609
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E5B82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9559T A9848G G10097A A10957G C14318T C14408T G22344T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557618
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E14F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557624
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-720EBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C9344T G10097A C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557627
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71EDC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4741C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557632
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E1B68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T A20055G C21614T A23403G C23731T C25701A G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557638
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-724A89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4741C A4826G C10623T C14408T C16887T G17592T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557639
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71DF66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T -11072TTC C14220T C14408T T19893C A23403G C24370T C25728T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557640
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-720CD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A23403G C26029A C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557641
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71D2C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557642
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71D151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G G24095T G24666K -25700CCC C28171T GGG28881AAC A28995G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557644
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6DF462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557646
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71E378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4741C A4826G C10623T C14408T C16887T G17592T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557649
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71DF93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C4002T G10097A G11083T G11634T C13536T C14408T C21691T C22716T A23403G C23731T C27970T GGG28881AAC C28909T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557651
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-720C1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC C28171T GGG28881AAC A28995G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557652
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71C019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557653
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-720BF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T T16764C C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557663
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71D160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC C26681Y C28171T GGG28881AAC A28995G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557666
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7259C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6401T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557670
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6E0510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557673
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7210F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7267T G7675T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557677
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-721196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7267T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557678
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6DF9EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11774A C14408T A20268G A22525G A23403G C27630T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557683
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-722FB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4328G A8072G C11919T C14408T T18909C A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557684
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-722A6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19402T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557686
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-724C0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T G15243T G18782T C19488T G22225T T22906C A23403G T27501G GGG28881AAC G29736C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557687
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-725B67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T G15243T G18782T C19488T G22225T T22906C A23403G T27501G GGG28881AAC G29736C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557690
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71C547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T C8208T C8645T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C24054Y C25703T C26942T C28171Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557691
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71DF75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557695
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-721415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13459A C14408T C16092T C18714A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557698
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-725727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557707
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-7211B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7267T C14408T A23403G GGG28881AAC C29200Y G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557715
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71C50B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557721
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-725AB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T G15243T G18782T C19488T G22225T T22906C A23403G A24949G T27501G GGG28881AAC G29736C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557724
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71D9C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T C14408T G18318K C22224T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557725
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71D124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557727
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71E0DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4832T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557729
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71C4B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4931T G11083T C14408T T19893C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557735
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-724FB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9744G C14408T C19011T A23403G C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557738
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B5927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557744
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BE311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8937T C14408T C17135T C20936T A23403G G25217T C25350T T25899C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557747
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C176A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C22480T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557751
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BF79C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2501G C3037T C6395T G10565C G11804A A12410G C14408T A18366G C18788T T19839C T21093C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557755
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6AD342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7948T G10097A C13536T C14408T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557769
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6AD500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1890A C3037T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557770
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C1B5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T T11568C C13536T C14408T C17028T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557772
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6AEB2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1440T C3037T T3100G G10097A G10324A C14408T T17895G A20055G G21295T A23403G C23731T C24378T G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557773
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B564E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557779
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B0AA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557780
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6AF1DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557787
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C2C2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C25521T C27513T C28332T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557790
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C3A41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC A29242G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557794
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6AFC90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1581C C3037T C3176T C4931T C5694T A14004G C14408T T19893C A23403G G25297T G26526T GGG28881AAC G29628T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557798
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B580C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC G29778T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557799
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BF2B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1214A C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557806
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C1D95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2135T C3037T T6394C A9433T G10265A C14408T G14632A A19650G G21123T A23403G G25459T T25478G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557809
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B4EED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T C14724T A23403G GGG28881AAC C29733A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557810
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6AEC46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557820
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C1DE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1890A C3037T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557825
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B59DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A T10690Y C14408T T17781C A19650G G20469T G20491T G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557834
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BD479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T G17572K A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557837
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C1B31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16981G C21859Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557839
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B2DD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9744G C14408T C19011T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557846
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-6AE860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557850
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BF6F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9272C C14408T T15648C G19645K G20931A A23403G T27802C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557855
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6AF261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557856
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C1CD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C854T C3037T G5716T T10453C C11195T C14408T G14428T A23403G C25553T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557860
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C3786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC A29242G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557861
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C13A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T C17028T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557863
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B556F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26398A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557872
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C3030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1800A G2035T C3037T T10257C C10702T T14344A C14408T A23403G C23854T G25972A G27842T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557873
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BEB73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T A20055G C21614T A23403G C23731T C25701A G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557875
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B5ABB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557888
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6AE174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557892
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B58B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T C3037T A9433T G10265A C14408T A19650G A23403G GGG28881AAC G29778T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557903
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B0898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C6720T T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557904
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B5848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557922
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6AECDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T G15243T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557924
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6AD904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557928
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B4E47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1103T C3037T C14408T A20268G C22482T A23403G A27156G C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557930
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BD52B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557932
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B5D76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T T17781C A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557945
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-6B2EA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557946
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-6B2FA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557960
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B0072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C703T C3037T C6638T C14408T G15907T C18877T G23311T A23403G G25563T C25571T T25825C C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557962
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-6AE7AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G A28508R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557968
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B52FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9559T A9848G G10097A A10957G C14318T C14408T A23403G C23731T C28171M G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557973
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6AEDF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6401T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557975
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C270F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C5869T G7042T C7528T G10097A C13536T G13749T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557980
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B35CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4803G G10265A T13794G C14408T A23403G G25273K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557981
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C1B7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2135Y C3037T T6394C A9433T G10265A C14408T G14632A A19650G G21123T A23403G G25459T T25478G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557982
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6AD667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T A17841G C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558128
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68E602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559130
 2020-07-01 2020-09-28
 United Kingdom hCoV-19/England/ALDP-509196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560330
 2020-07-01 2020-09-29
 United States hCoV-19/USA/NM-UNM-00659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11074T C14408T C16260T C22295T A23403G C25006T G25563T C26110T T26987C C28677T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560983
 2020-07-01 2020-09-30
 Sweden hCoV-19/Sweden/20-52280/2020
 G61T C241T C3037T G3774A C14408T A23403G G25061C C25433T GGG28881AAC

EPI_ISL_566059
 2020-07-01 2020-10-01
 United Kingdom hCoV-19/England/202760355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1170T C3037T C4002T G10097A G11083T G11634T C13536T C14408T C21691T C22716T A23403G C23731T C27970T GGG28881AAC C28909T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_566091
 2020-07-01 2020-10-01
 United States hCoV-19/USA/GA-CDC-5103/2020
 C241T C1288T G1298A C1593T C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_566103
 2020-07-01 2020-10-01
 United States hCoV-19/USA/GA-CDC-5123/2020
 C241T C1288T G1298A C3037T C14408T G18186T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

MW001285
 2020-07-01 2020-09-14
 United States SARS-CoV-2/human/USA/290-NP-OP/2020
 C241T C1059T A2219G C3037T C11916T G13975T C14408T C17010T A18650T A23403G G25563T G28068T AAAAAAAAAAAAAAAAAAAAA29883-

MW030234
 2020-07-01 2020-09-22
 Peru SARS-CoV-2/human/PER/covper003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T A3528C C4586T C8320T C8986T C12781T C14408T A20268G A23403G G26589T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030235
 2020-07-01 2020-09-22
 Peru SARS-CoV-2/human/PER/covper004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T A7903G G10097A C13536T C14408T A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030236
 2020-07-01 2020-09-22
 Peru SARS-CoV-2/human/PER/covper005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T G1306A C3037T C4002T A5958G G10097A A10323G C13247T C13536T C14408T A23403G C23731T GGG28881AAC G29179T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030237
 2020-07-01 2020-09-22
 Peru SARS-CoV-2/human/PER/covper006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C2509T C3037T C4002T G10097A A10323G C10440T C13536T C14408T C14790T G15535T C17004T C17762T A23403G C23731T C25831T GGG28881AAC G29179T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030252
 2020-07-01 2020-09-22
 Peru SARS-CoV-2/human/PER/covper021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C13536T C14408T C14877T A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_480694 MT745668
 2020-07-02 2020-07-02
 Australia SARS-CoV-2/human/AUS/NT47/2020
 ATTA1- C4540T C8782T T9477A C14805T G25979T T28144C C28311T C28657T C28863T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_480695 MT745669
 2020-07-02 2020-07-02
 Australia SARS-CoV-2/human/AUS/NT48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C657Y C1059T C3037T C14408T A22296R A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480696 MT745670
 2020-07-02 2020-07-02
 Australia SARS-CoV-2/human/AUS/NT49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- T4639W C7239Y C9967Y C21855S G22973R G25323T C27208Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_480775 MT745743
 2020-07-02 2020-07-02
 Australia SARS-CoV-2/human/AUS/VIC2163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_489937
 2020-07-02 2020-07-14
 United States hCoV-19/USA/WI-GMF-08878/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C715T C1059T G2036T C3037T C11916T C14408T AA21550MW G23311T A23403G A23586G A25381M G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489938
 2020-07-02 2020-07-14
 United States hCoV-19/USA/WI-GMF-08879/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C715T C1059T G2036T C3037T C4686T C11916T C14408T C20823T AA21550MW G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489939
 2020-07-02 2020-07-14
 United States hCoV-19/USA/WI-GMF-08889/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T C15324T C16260T C21575T C21622T C22329Y A23403G A25381M G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489978 LR861668
 2020-07-02 2020-07-14
 Switzerland 180040
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G5950K A6950W G10097R C13536T C14408T G19732T A23403G C23731T C24082Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489979 LR861688
 2020-07-02 2020-07-14
 Switzerland 180041
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T T1901Y C3037T C3044Y T3144K A5563R G6532K C6627Y G8934A T9888Y C14408T C17492Y C20389Y T20423Y C22437Y T23113Y A23122M A23403G C23683T C25355Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489981 LR861667
 2020-07-02 2020-07-14
 Switzerland 180043
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T C5784Y G5950K T6954W C6968M G10097R C13536T C14408T T17675Y G19732T G20931K A23403G C23731T C24642Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_489982 LR861673
 2020-07-02 2020-07-14
 Switzerland 180045
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G1590R A2905W C3037T C6883Y A6929R C11471T C12789Y C14408T T17675Y C19524T G22205C A22904W A23122M A23403G C25731T GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_491375 MT772473
 2020-07-02 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4232T C9120T C14408T A19899T A21464G A23403G G25444A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491378 MT772476
 2020-07-02 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C A1982G C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491379 MT772477
 2020-07-02 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491382 MT772480
 2020-07-02 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T G18985T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491385 MT772484
 2020-07-02 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491388 MT772488
 2020-07-02 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491399 MT772497
 2020-07-02 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C23683T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491404 MT772501
 2020-07-02 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T G19563A A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491406 MT772503
 2020-07-02 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C25276T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491410 MT772507
 2020-07-02 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491420 MT772518
 2020-07-02 2020-07-16
 United States SARS-CoV-2/human/USA/WI-UW-747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4232T C9120T C14408T A19899T A21464G A23403G G25444A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491722
 2020-07-02 2020-07-17
 United Kingdom hCoV-19/England/202881388/2020
 C241T C3037T C7165T G10265A C14408T C15720T A15972G C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC C29537T

EPI_ISL_491723
 2020-07-02 2020-07-17
 United Kingdom hCoV-19/England/202881389/2020
 C123Y C241T C3037T C7165T G10265A C14408T C15720T A15972G C19718T G22381A A23403G C24795T G25838K G26700T T28759C GGG28881AAC G29468K

EPI_ISL_491724
 2020-07-02 2020-07-17
 United Kingdom hCoV-19/England/202881390/2020
 C241T C3037T C7165T G10265A C14408T C15720T A15972G C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC

EPI_ISL_491725
 2020-07-02 2020-07-17
 United Kingdom hCoV-19/England/202881391/2020
 C241T C3037T C7165T C9165T G10265A C14408T C15720T A15972G A19257G C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC C29635T

EPI_ISL_491726
 2020-07-02 2020-07-17
 United Kingdom hCoV-19/England/202881392/2020
 C241T C3037T C7165T G7344A G10265A C14408T C15720T A15972G T18083Y C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC

EPI_ISL_491727
 2020-07-02 2020-07-17
 United Kingdom hCoV-19/England/202881393/2020
 C241T C3037T C7165T G10265A C14408T C15720T A15972G C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC

EPI_ISL_495023
 2020-07-02 2020-07-22
 India hCoV-19/India/GBRC285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C18877T G20326A A23403G G25563T G26152T C26735T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_495535
 2020-07-02 2020-07-23
 South Africa hCoV-19/SouthAfrica/KRISP-0410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G174T C241T C635T A3003C C3037T C9857T C14408T A23403G A23920G A26530G G27561T C28253T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_495536
 2020-07-02 2020-07-23
 South Africa hCoV-19/SouthAfrica/KRISP-0411/2020
 ATTAA1- C241T C3037T C6762T T12503C A12792G C14408T A23403G G25455T G25770T GGG28881AAC C29721T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_495537
 2020-07-02 2020-07-23
 South Africa hCoV-19/SouthAfrica/KRISP-0412/2020
 A1- C241T C3037T C6762T T12503C A12792G C14408T A23403G C25207T G25455T G25770T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_495538
 2020-07-02 2020-07-23
 South Africa hCoV-19/SouthAfrica/KRISP-0413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C3811T A5163G C13275T C14396T C14408T G21770T A23403G C25844T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_495539
 2020-07-02 2020-07-23
 South Africa hCoV-19/SouthAfrica/KRISP-0414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G174T C241T C635T C3037T C14408T A23403G A23920G A26530G G27561T C28253T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495540
 2020-07-02 2020-07-23
 South Africa hCoV-19/SouthAfrica/KRISP-0415/2020
 ATTAAA1- G174T C241T C635T C3037T C9857T C14408T A23403G A23920G A26530G G27561T C28253T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_495541
 2020-07-02 2020-07-23
 South Africa hCoV-19/SouthAfrica/KRISP-0417/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T G709A C3037T T7012A C12400T C14408T C19402T A23403G G28326T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495542
 2020-07-02 2020-07-23
 South Africa hCoV-19/SouthAfrica/KRISP-0418/2020
 ATTA1- C241T C3037T C6762T T12503C C14408T G19009T C19263T C19854T A23403G C23525T G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_495550
 2020-07-02 2020-07-23
 South Africa hCoV-19/SouthAfrica/KRISP-0460/2020
 A1- C241T G578A C3037T C14408T C16376T A23403G C24034T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498108
 2020-07-02 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0570/2020
 ATTA1- C241T C3037T T9508C C14408T G22026C C22675T A23403G G23868T G24794T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_498560
 2020-07-02 2020-07-27
 Italy hCoV-19/Italy/FVG-ICGEB_S212/2020
 C40T C241T C3037T C6267T T9961C G10265A G12052T C13551T C14408T A15972G C16178T G18498T G19648T C19718T A23403G A25492G A26057G T28759C GGG28881AAC

EPI_ISL_498565
 2020-07-02 2020-07-27
 Singapore hCoV-19/Singapore/667/2020
 ATTAAAGGTTTATACC1- A1846C C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T T19956C C23929T C25546T T26957C C28311T G29616T GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_498567
 2020-07-02 2020-07-27
 Singapore hCoV-19/Singapore/669/2020
 ATTAAAGG1- C6310A C6312A G8174A C11074T G11083T C13730T C16694T C19524T C23185T C23929T G28180T C28311T ATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29752-

EPI_ISL_499398
 2020-07-02 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1692C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2638T C3037T G11083T C14408T TTA21991- A23403G GGG28881AAC G29825A

EPI_ISL_499782
 2020-07-02 2020-07-28
 United Kingdom hCoV-19/England/NORT-2937B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T T8524C G10097A T10992C C11001T C14408T C14688T A23403G C23731T A25201C C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499983
 2020-07-02 2020-07-28
 United Kingdom hCoV-19/England/LCST-24D741B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500573
 2020-07-02 2020-07-29
 Ireland hCoV-19/Ireland/70IRL90620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T C18877T C22444T A23403G G25563T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500779
 2020-07-02 2020-07-29
 Norway hCoV-19/Norway/2856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T C3037T C3583T C14408T T18132C A23403G G23486T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501129
 2020-07-02 2020-07-30
 United States hCoV-19/USA/WA-UW-13275/2020
 ATTAAAGGTTTATA1- C16A T18G AG22GA C36T C241T C1059T C3037T T8883C TT8885AA G9536A T10554A AGG13512TTA TA14222GC C14408T T21206C T21209C G21212A A23403G G25563T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501130
 2020-07-02 2020-07-30
 United States hCoV-19/USA/WA-UW-13277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C8480T T8883C T10554A C11152T C13418A AGG13512TTA TA14222GC C14225T C14408T TG17178GT G17182A C17678T C19881T T21146D A23403G C27654G A29594T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501131
 2020-07-02 2020-07-30
 United States hCoV-19/USA/WA-UW-13288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T T10554A AGG13512TTA C13994T TA14222GC C14408T C15933T G16968T T19839C A20055G C21859T A22656C A23403G C25413T G25691T GGG28881AAC C29784T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501138
 2020-07-02 2020-07-30
 United States hCoV-19/USA/WA-UW-13321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T T10554A AGG13512TTA TA14222GC C14408T C18486T A20268G T21146A G21151T T22162C A23403G C28854T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501147
 2020-07-02 2020-07-30
 United States hCoV-19/USA/WA-UW-13395/2020
 ATTAAAGGT1- T11D AAC34TTT C241T C1059T C3037T T3654A C12885T TA14222GC C14408T C16260T C22987T A23403G T24721C G25563T C27476T A28113C C28821A C29754T TG29867AA C29870A

EPI_ISL_501148
 2020-07-02 2020-07-30
 United States hCoV-19/USA/WA-UW-13400/2020
 ATTAAA1- C36T C241T C1057T G2282A C3037T C4073T C8118T T9742C T12530C C14408T C17639T A23403G TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501149
 2020-07-02 2020-07-30
 United States hCoV-19/USA/WA-UW-13401/2020
 ATTAAAGGTTTATACCTTC1- A31T AAC34TTT C241T G2755T C3037T G12685T C14408T C18486T A20268G C21575T T22162C A23403G C25710T C28854T TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501150
 2020-07-02 2020-07-30
 United States hCoV-19/USA/WA-UW-13402/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C1059T T1927C A2994G C3037T T8883C TT8885AA C10319T AGG13512TTA T14222G C14408T A18424G C21302T CG21304AA A22255T A23403G G25563T G25907T C27964T C28472T C28869T TG29867AA C29870A -29904AAAAAAAAAAAAAA

EPI_ISL_509247
 2020-07-02 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000594/2020
 G174T C241T C539T C3037T C6196T C9857T C13207T C14408T A23403G A23920G A26530G G27561T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_509248
 2020-07-02 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000595/2020
 ATT1- G174T C241T C539T C3037T C9857T C14408T A23403G A23920G A26530G C27509T G27561T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_509249
 2020-07-02 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000596/2020
 ATT1- C241T C3037T C6762T A9439G T12503C G12769T C14408T A23403G G25770T GGG28881AAC A28973C C29721T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_509256
 2020-07-02 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000603/2020
 C241T C3037T C6762T C9163T T12503C C14408T A23403G G25770T GGG28881AAC C29721T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_509266
 2020-07-02 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000614/2020
 ATTAAAGGTTT1- G105T C241T C3037T C6762T A9439G T12503C C14408T A23403G G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509267
 2020-07-02 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000615/2020
 C241T C3037T C6762T A9439G T12503C C14408T T17007C A23403G G25455T G25770T GGG28881AAC C29269T C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509283
 2020-07-02 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000632/2020
 ATTA1- C241T C3037T C6762T T12503C T12965C C14408T A23403G G25770T GGG28881AAC C29721T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509284
 2020-07-02 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000633/2020
 ATTAA1- C241T C3037T C6762T T12503C C14408T A23403G G25770T GGG28881AAC C29721T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509305
 2020-07-02 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001043/2020
 ATTAAAGGT1- A169T C241T G2164C C3037T C6027T C9112T T9498C C14408T C16946T A20268G A23403G C24023T C24865T C26833T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509315
 2020-07-02 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001058/2020
 ATTAAAGGTTT1- C241T C3037T C6762T T12503C C14408T A23403G G25770T GGG28881AAC C29721T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509323
 2020-07-02 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001067/2020
 ATTAAAGGTTTATAC1- C241T G626T C3037T G11605T T12503C C14408T A23403G C23638T G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509329
 2020-07-02 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001075/2020
 AT1- C241T C3037T C3961T C4002T G10097A C12357T C13536T C14408T C18747T A23403G C23731T GGG28881AAC G29425T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_512672
 2020-07-02 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C3037T G10360A C14408T A18047C A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_512673
 2020-07-02 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTG1- C241T C1059T C2716T C3037T T4729C C7482T C14408T C17010T A23403G G25563T C25810T CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_512674
 2020-07-02 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0069/2020
 TAAAGGTTTATACCTTCCCAGGTAA3- C241T C3037T G10360A C14408T A18047C A23403G GGG28881AAC CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_512675
 2020-07-02 2020-08-11
 Costa Rica hCoV-19/Costa Rica/INC-0070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- C241T C1059T C2716T C3037T C7482T C14408T C17010T A23403G G25563T C25810T TGTG29840CCAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_512846
 2020-07-02 2020-08-12
 Costa Rica hCoV-19/Costa Rica/INC-0066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C5884T G8572T C10340T G10360A G11083T C14408T A23403G C24912T C28706T GGG28881AAC C29144T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_514211 MT890344
 2020-07-02 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0865/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C10319T C14408T G16710T G20176T A23403G A25121T G25563T C27964T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_515021
 2020-07-02 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G C24133T G25563T G29179T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515022
 2020-07-02 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2619/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29212T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_515023
 2020-07-02 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2620/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29212T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_515024
 2020-07-02 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2621/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29212T G29779T A29863G T29867A AAAAAAAAAAAAAAAA29888-

EPI_ISL_515025
 2020-07-02 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2622/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAA29890-

EPI_ISL_515026
 2020-07-02 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2623/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29212T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_515034
 2020-07-02 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2632/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T A12884G C14408T C16650T A20675T A23403G G25563T G29179T G29779T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_517807 MT966161
 2020-07-02 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0917/2020
 ATTA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C12049T C14408T A23403G G25563T C28087T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_518473 MT971409
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_520175 MT971398
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520633 MT970176
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520748 MT972436
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520836 MT972565
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3129/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520873 MT972460
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520880 MT972467
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25889T G27506T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520895 MT972482
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520897 MT972484
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3211/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521454 MT969370
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521455 MT969371
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521509 MT972364
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23895T GGG28881AAC

EPI_ISL_521510 MT972365
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A543C A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521511 MT972366
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2669/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521512 MT972367
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G10237A C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521514 MT972368
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2672/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521515 MT972369
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C14408T A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_521518 MT972372
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2677/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521525 MT972379
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2684/2020
 ATTA1- T13C C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C G25793A GGG28881AAC

EPI_ISL_521526 MT972380
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G23608T GGG28881AAC C28961T

EPI_ISL_521529 MT972383
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2689/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521530 MT972384
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2690/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521531 MT972385
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2691/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521532 MT972386
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521533 MT972387
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521534 MT972388
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C10507T C14408T G16647T C18555T C19983T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521535 MT972389
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2695/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521536 MT972390
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521635 MT969536
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2804/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23895T GGG28881AAC

EPI_ISL_521637 MT969538
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521643 MT969544
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T A3082G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521646 MT969546
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23895T GGG28881AAC

EPI_ISL_521647 MT969547
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23895T GGG28881AAC

EPI_ISL_521650 MT969550
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521652 MT969552
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A3082G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521655 MT969555
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2980T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521657 MT969557
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2826/2020
 ATTAAAGGTTTATACCTTCCC1- C241T A1163T C3037T T7540C C8247T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521658 MT969558
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25690T GGG28881AAC C28961T

EPI_ISL_521661 MT969561
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521665 MT969565
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2980T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521671 MT969571
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C8290T C14408T G16647T C18555T G22992A G23401A A23403G C27610T GGG28881AAC C28961T

EPI_ISL_521673 MT969573
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C25669T GGG28881AAC

EPI_ISL_521685 MT969589
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2854/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521686 MT969590
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2855/2020
 ATTAAAGGTT1- C241T A1163T C2980T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521687 MT969591
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2856/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521688 MT969592
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521689 MT969593
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C13335T C14408T G16647T C18555T G22992A G23401A A23403G C26078T GGG28881AAC

EPI_ISL_521690 MT969594
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23895T GGG28881AAC

EPI_ISL_521691 MT969595
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521692 MT969596
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2861/2020
 ATTAAAGGTTTAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521696 MT969600
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521703 MT969607
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521706 MT969610
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2875/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521720 MT969696
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521723 MT969699
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC T29729C

EPI_ISL_521724 MT969700
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23895T GGG28881AAC

EPI_ISL_521860 MT972099
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/NT51/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522227 MT969524
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522229 MT969526
 2020-07-02 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_522470
 2020-07-02 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2690/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_522472
 2020-07-02 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2692/2020
 ATT1- C241T C1059T C3037T C11916T C14408T C16650T C18395T A20675T C23327T A23403G G25563T C27643T G29179T G29737C CGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29743-

EPI_ISL_523035
 2020-07-02 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-17-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C280T C1457T C1594T C3037T C11109T G12794A C13671T C14408T C22916A T23018C A23403G G25563T T26047G G27261T C28535A C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523036
 2020-07-02 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-17-16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C13671T C14408T C22916A T23018C A23403G G25563T T26047G G27261T C28535A C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523037
 2020-07-02 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-17-19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C13671T C14408T C22916A T23018C A23403G G25563T T26047G G27261T C28535A C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523038
 2020-07-02 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-17-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C13671T C14408T C22916A T23018C A23403G G25563T T26047G G27261T C28535A C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523039
 2020-07-02 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-17-6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C13671T C14408T C22916A T23018C A23403G G25563T T26047G G27261T C28535A C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523513
 2020-07-02 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2305T C3037T C14408T G20352T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525708
 2020-07-02 2020-09-01
 United States hCoV-19/USA/WA-S2718/2020
 ATTAAAGGTTTATACCTTCC1- C241T G1681A C3037T C14408T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525709
 2020-07-02 2020-09-01
 United States hCoV-19/USA/WA-S2719/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T A2440G C3037T C3253T C8639T C9286T G11083T A11732T C14408T G16912T A23403G G25563T C27689T G29553A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_525710
 2020-07-02 2020-09-01
 United States hCoV-19/USA/WA-S2720/2020
 ATTAAAGGTT1- C241T C913T C1059T C1758T C3037T C5183T C5907T C7471T G11083T C12534T C14408T A22320G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525711
 2020-07-02 2020-09-01
 United States hCoV-19/USA/WA-S2721/2020
 ATTAAAGG1- C241T C1059T A2440G C3037T C3253T C8639T C9286T G11083T A11732T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525927
 2020-07-02 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_525931
 2020-07-02 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T C29274A

EPI_ISL_525932
 2020-07-02 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15024T C16260T C20429A G22225T A23403G G25563T C28821A

EPI_ISL_526862
 2020-07-02 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0741/2020
 ATTAAAGGTTTATACC1- C241T C1059T G2035T C3037T C11916T C14408T C16111T C18998T T21940C A23403G G25563T G25947C C28854T G29540A

EPI_ISL_526871
 2020-07-02 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C9561T C14408T T22213C A23403G G25563T C25658T

EPI_ISL_526872
 2020-07-02 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0756/2020
 ATTAAA1- C241T C1059T C3037T C14408T T22213C A23403G G25563T C25658T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_526874
 2020-07-02 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T T22213C A23403G G25563T C25658T

EPI_ISL_527019
 2020-07-02 2020-09-03
 Australia hCoV-19/Australia/NSW2473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6145T C12053T C14184T C14408T C21928T C22498T A23403G C24802T G25088T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527021
 2020-07-02 2020-09-03
 Australia hCoV-19/Australia/NSW2480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T A3379G C14408T C18652T C18877T C22444T G22918T A23403G G25352T G25563T G26529C C26735T C28854T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527575 MT958207
 2020-07-02 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1510/2020
 ATTAAA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527745
 2020-07-02 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C751T C1059T G2144T C2716T C3037T C7482T C14325T C14408T T16398C C17010T A23403G G25563T G27226T G28209C TTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29728- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_527750
 2020-07-02 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G10360A C14408T A18047C A23403G GGG28881AAC AG29852TT T29856C TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859- A29902G

EPI_ISL_530173 MT997695
 2020-07-02 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T490A C1059T C3037T C5339T C14408T C16260T A23403G G25563T C28821A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_534234
 2020-07-02 2020-09-11
 Sweden hCoV-19/Sweden/20-52284/2020/P1
 C241T G407A C3037T G5008T A13363G C14408T G18088A T18132C C20823T A21417G A23403G C25117T C27889A GGG28881AAC

EPI_ISL_534239
 2020-07-02 2020-09-11
 Sweden hCoV-19/Sweden/20-52384/2020/P1
 C241T C3037T C8078T C14408T G18214A C21590T A23403G C23481T C26858T GGG28881AAC

EPI_ISL_536483
 2020-07-02 2020-09-16
 Peru hCoV-19/Peru/ANC-INS-084/2020
 ATTAAAG1- C241T C2509T C3037T C4002T G10097A A10323G C10440T C13536T C14408T C14790T G15535T C17004T C17762T A23403G C23731T C25831T GGG28881AAC G29179T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536484
 2020-07-02 2020-09-16
 Peru hCoV-19/Peru/ANC-INS-085/2020
 ATTAAAG1- C241T T1753C C3037T C4002T G10097A A10323G C13536T C14408T C18493T G21255T A23403G C23731T GGG28881AAC G29179T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_541007
 2020-07-02 2020-09-22
 South korea hCoV-19/South Korea/IHC20065/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T C18395T A20675T C23327T A23403G G25563T C27643T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_542025
 2020-07-02 2020-09-23
 United States hCoV-19/USA/NMDOH-2020174703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C3037T T8041C C14408T G22225T A23403G G25563T G26828A C28005T G29868A C29870A

EPI_ISL_545608
 2020-07-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-7736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G248T C335T C1059T C3037T C9120T A12197C C14408T C15951T G22918T A23403G G25563T A29146T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545658
 2020-07-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-7839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A156G C241T C1059T C3037T C10319T G11266T C12374T C13115T C14408T G21255C C21721T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545769
 2020-07-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-7989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C1912T C3037T A4851G C4931A G9479T C14408T C17119A C18508T C23191T A23403G C23638T G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547209
 2020-07-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-6067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6286T A10323G C14408T T15276A A23403G G25563T C27247T T27484C G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547287
 2020-07-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-6169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C13424A C14408T C17639T A23403G C24026T C29762T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547318
 2020-07-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-6215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G7042T C10458T G11083T C11396A C11916T C14178A C14408T C18998T A23403G A23947G G25563T T26187C C26469G G26828T T28149C G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547331
 2020-07-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-6234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6145T C10186T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547336
 2020-07-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-6243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C5416T G10870T C13487T C14408T C16260T C21707T T23272C A23403G C23557T G25563T G26690T C27972T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547373
 2020-07-02 2020-09-24
 United States hCoV-19/USA/TX-HMH-6299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C12171T C14408T G15438T A18818G A23403G G25494T G25563T C27964T C28099T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551737
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6A2B81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G521T T2882G C3037T T3306C C10369T C12484T C14408T G18412T G18674A C19140T A23403G G23501T GGG28881AAC G28939T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551739
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6AA1B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C14708T C19488T A23403G T25851C C26527T C28391T GGG28881AAC C29659T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551742
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-688DA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C G10097A C13536T C13730T C14408T T20427A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551745
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6A5BBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1437T G2078A C3037T A10323R C14408T C18877T A23403G T24596C G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551747
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6A027F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C5621T G9479T C14408T A20288C A23403G G28027T G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551748
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-69C0B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C5621T G9479T C13487T G14008A C14408T A20288C A23403G G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551749
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-682CB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551750
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6A2CF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G521T T2882G C3037T T3306C C10369T C12484T C14408T G18412T G18674A C19140T A23403G G23501T GGG28881AAC G28939T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551754
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6798D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551755
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68397D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G C28383T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551759
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6898E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T T9037C C14408T C18928T A23403G C24334T C27128T GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551760
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-689E5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551761
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68844A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T A17841G C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551762
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-689810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T T9037C C14408T C18928T A23403G C24334T C27128T C27737Y GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551763
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-683852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551765
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-69F194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C629T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C28528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551774
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6A8E64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7420T C13548T C13730T C14408T A15942G G23120T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551776
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68696B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551777
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-6AA406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G260T C3037T T8944C C14408T C14741T A23403G A28294C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551779
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-684208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2177K C3037T A4926C T8296C G11083K C14408T A18184G G21624T A23403G G25699A GGG28881AAC G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551780
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6789B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A21868T A23403G G27967K GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551782
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6A294B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G521T T2882G C3037T T3306C C10369T C12484T C14408T G18412T G18674A C19140T A23403G G23501T GGG28881AAC G28939T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551785
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-683D08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551790
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6A69DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29468T G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551791
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6A185E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C5621T A6509R G9479T C14408T A20288C A23403G G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551792
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-69DA31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3880A G8102T C11200T C14408T C15925T A23403G T24628C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551793
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6A7E47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13548T C13730T C14408T A15942G G23120T A23403G G25429T C29367T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551794
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6A0C80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T G13749T C14408T G20569T G22199T A23403G C23731T C24797M GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551795
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6839B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T A23403G A27691T GGG28881AAC G29593K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551797
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-677903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551798
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-688D03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C G10097A C13536T C13730T C14408T T20427A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551807
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-678A96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3382T A6248C C14408T C22851T A23403G GGG28881AAC AA29770GG CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551808
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-689959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551809
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6A65F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C874T C3037T C14408T A23403G G23868T G24872A GGG28881AAC C29215T C29409A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551813
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-69E4C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2458T C3037T C4002T G8353A C8950T C9985T G10097A C13536T C14408T C18877Y C19145T A23403G C23731T G26152T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551814
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6A7120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C4456T C5621T G9479T C14408T A20288C A23403G C25624T G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551815
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-689A65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T T3925G G8371T G11083T C14408T C17746T G19962T G22240T C22477T A23403G T24142C G25563T C25688Y A28591T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551817
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6ABF04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7945T C9430T C14408T A23403G G26918T C28093T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551818
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-693682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A17861G A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551820
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6A625B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3569G C3695T A6211G A8659G A9883G C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551825
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-67FB6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T G5924T C6401T C14408T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551826
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-689652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C A10957R C14408T A18184G G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551827
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-688019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551830
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-6A134E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7360A A10018G C14408T A19134G T19839C T21854C A23403G C23481T A24730T A25741G C26681T T27285C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551831
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-67A6DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C2221A A2576T A3023G C3037T C5175T C6401T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551834
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6832DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A23403G C26029A C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555586
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-65CAB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5658C C13665T C14408T C17304T A23403G A24367G C24621T C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555654
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6634FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556074
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D9161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16092T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556078
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D5DE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9744G C14408T C19011T A23365G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556082
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CE475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556086
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D08ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T G15243T G18782T C19488T G22225T T22906C A23403G T27501G GGG28881AAC G29736C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556088
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-6CE967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556099
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D56DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C10741T C14408T A23403G A26234T G27676T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556103
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D1406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A489G C3037T C7267T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556128
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C93E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9848G G10097A A10957G C14318T C14408T C18526T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556129
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C9A0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C11074Y C13335T C14408T A20268G A23403G G28460T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556132
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CD3B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C913Y C1419T C3037T C4158T C8318A C10615T G11401R C14408T G18859T C19983Y G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556142
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D0540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C12473T T12548C C14408T A19650G G21538A A23403G C26645T C26894T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556143
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D1A04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556144
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CCF2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1148T C2003T C3037T C4002T G6622C G10097A C13536T C13730T C14408T T20427A C23399A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556145
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D1FC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A G11837T C14408T C18807T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556147
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D6489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC C29541Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556149
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C993F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C13335T C14408T A20268G A23403G G28460T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556153
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D6665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556162
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D6A0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7948T G10097A C13536T C14408T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556168
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C66C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G A5877G G10097A C14408T A20055G A23403G C23731T C24370Y G25947T T28723C G28736K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556169
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D2D0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T A9433T TAT9858- G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556174
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CA3A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T C21637T A23403G G25912T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556175
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CE0AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2458T C3037T A4926C G6850T C12651T C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556181
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D51B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T C17333T C20823T A23403G C23731T T25751C C28720T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556193
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C90C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3885T C4002T C6762T G10097A C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556194
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D03EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C12473T T12548C C14408T A19650G G21538A A23403G C26645T C26894T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556212
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CD397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T T1753C C3037T TTG3333- C4158T C8318A C12756T C14408T G18859T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556215
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CE92B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19402T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556216
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D3176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556222
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D4351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4832T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556225
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CB6BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5658C C13665T C14408T C17304T A23403G A24367G C24621T C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556228
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D29AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556229
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C60B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6285T -11072TTC C14220T C14408T T19893C A23403G C24370T C25728T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556239
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D86CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4741C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556241
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D9E5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7764T C9474T C14408T C15237T C17285T A23403G C26133T GGG28881AAC T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556243
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CD528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4076A C14408T C18877T T22165C A23403G C24771T GAA25437- G25563T C26735T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556245
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D2274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G26690T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556246
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CDE78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2458T C3037T A4926C C6040Y G6850T C12651T C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556247
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D502C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T C17333T G18169K C20823T A23403G C23731T T25751C C28720T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556249
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D7A3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T G15243T G18782T C19488T G22225T T22906C A23403G T27501G GGG28881AAC G29736C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556260
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CD78C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1181T G1914A C3037T G4399T C5192T C8247T C8917T C14408T C16192Y T16456C C18687T T18753C A23403G C23638T G27896T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556264
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CD6BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556273
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CD31F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556274
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C5FF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T G6710A C8318A C10615T C14408T G18859T G21624T A23403G G27366T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556278
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D0A6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T G15243T G18782T C19488T G22225T T22906C A23403G T27501G GGG28881AAC G29736C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556292
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CE985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557654
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-71C51A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G C26894Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557759
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BC7DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T T16764C C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557763
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BBC28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19402T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557803
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B8229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14791T C17410T A23403G C27494T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557804
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B81E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16092T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557805
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C0CE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T -11072TTC C11886T C14220T C14408T T19893C A23403G C24370T C25728T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557813
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BBE5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19402T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557814
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B88BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557818
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C091A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1111A T1704C C3037T C14408T A19084G A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557831
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BB693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T G19446R A23403G C27807T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557841
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BE812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T G12211T C14408T A23403G C28383T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557844
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BCD8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C21575T A23403G C26270T C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557901
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6C02E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557912
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BC3C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A C14408T T19023G A23403G C23731T G28580T A28864G GGG28881AAC A28983G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557931
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BBD9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19402T C21637T A23403G A28169G G28580A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557943
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B7B6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A A12928G C14408T G15708C A19650G C22079A A23403G GGG28881AAC C29509T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557955
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6BCC27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557987
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68FF8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557992
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-69343D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A17861R A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557996
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-68A28A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815T C3037T T3049C C14408T G21624T A23403G G27877T T28098C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558002
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68CE1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C6016T C8146T G10097A C14408T C21639T A22110R A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558009
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68B90C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558011
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-691174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4803G G10265A T13794G C14408T A23403G GGG28881AAC G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558013
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68C376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558032
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68EE37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558043
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6901C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C6016T C8146T G10097A C14408T C21639T A23403G C23731T CG28076AA GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558050
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66DEF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558051
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68F4BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C C19185T A20255G A23403G GGG28881AAC G29587A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558054
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68FE81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558060
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68C19A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2135T C3037T T6394C A9433T G10265A C14408T G14632A A19650G G21123T A23403G G25459T T25478G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558061
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68DBB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T C6285T G6622C G10097A C13536T C13730T C14408T T20427A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558074
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68E040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T G11521T C14408T T16764C C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558090
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6913BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4803G G10265A T13794G C14408T A23403G GGG28881AAC G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558092
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-691CFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4548G C11479T C14408T CC21636TT A23403G G26526T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558093
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68C2E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558094
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68F3CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T C14408T G14866A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558120
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68C16D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558123
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68E013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T C6285T G6622C G10097A C13536T C13730T C14408T T20427A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558130
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68DEFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G10688A C14408T C16332T C20389T A23403G C23683T C23731T C25782T G28580T GGG28881AAC C29514T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558142
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6926ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558145
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68E4BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2883R C3037T G3323A C12099T C14408T T20376A C20555T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558156
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68C015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17135T C20936T A23403G G25217T C25350T T25899C C28720T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558164
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-69063A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G C28383T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558176
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68B91B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878Y C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558183
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68CF45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C9967T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558184
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68BD3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2878T C3037T C14408T T15648C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558189
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68D8B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558198
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-690FA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17135T C20936T A23403G G25217T C25350T T25899C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558200
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68E0E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130T C3037T C3170T A4568G C6336T C14408T C19961T G20006T A23403G C27673T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558201
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-692780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T C8208T C8645T A12410G C14408T C17125T A18366G C18788T T19839C T21093C G21867T A23403G G25456T C25703T C26942T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558202
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-690193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558206
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68F13D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T A2641G C3037T C3622T C14408T C14676T G21119T A23403G C25844T C28087T G28690T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558209
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-691C19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T C28332T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558216
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68A484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T T7357C C14408T A23403G G23868T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558217
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-693673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558231
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68E0C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T C6285T G6622C G10097A C13536T C13730T C14408T T20427A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558236
 2020-07-02 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68EFBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T13827C C14408T G18756T A23403G C23430T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560333
 2020-07-02 2020-09-29
 United States hCoV-19/USA/NM-UNM-00660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1758T C3037T C5183T C12534T C14408T C19484T A22320G A23403G C24789T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560985
 2020-07-02 2020-09-30
 Sweden hCoV-19/Sweden/20-52285/2020
 C44T C241T C3037T C3686T G10846T C14408T A23403G A23851G C26447T GGG28881AAC C28887T A29074G

EPI_ISL_561223
 2020-07-02 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-1258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9891T C14408T C21736T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563987
 2020-07-02 2020-09-30
 Australia hCoV-19/Australia/VIC3034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564294
 2020-07-02 2020-09-30
 Australia hCoV-19/Australia/VIC7226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565729
 2020-07-02 2020-09-30
 Australia hCoV-19/Australia/VIC9808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_566061
 2020-07-02 2020-10-01
 United Kingdom hCoV-19/England/202880975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T T1438A C3037T T3909Y G10180T C13730T C14408T C17104T C21789T G22992A A23403G G24926T C26333T C27371T GGG28881AAC

EPI_ISL_566106
 2020-07-02 2020-10-01
 United States hCoV-19/USA/GA-CDC-5126/2020
 C241T C1288T G1298A C3037T C14408T C18877T A23403G G24751T G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_566107
 2020-07-02 2020-10-01
 United States hCoV-19/USA/GA-CDC-5127/2020
 C241T C1288T G1298A C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_568998
 2020-07-02 2020-10-02
 France hCoV-19/France/IHU-0942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G G22894A A23403G C25886T C27143T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT897260
 2020-07-02 2020-08-18
 Egypt SARS-CoV-2/human/EGY/Egy_S_03/2020
 TTAAAGGTTTATACCTTCCCAGGTAACA2C C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

MT897261
 2020-07-02 2020-08-18
 Egypt SARS-CoV-2/human/EGY/Egy_S_04/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- AA29- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947554
 2020-07-02 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2719/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T A2440G C3037T C3253T C8639T C9286T G11083T A11732T C14408T G16912T A23403G G25563T C27689T G29553A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

MT947570
 2020-07-02 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2721/2020
 ATTAAAGG1- C241T C1059T A2440G C3037T C3253T C8639T C9286T G11083T A11732T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT947574
 2020-07-02 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2720/2020
 ATTAAAGGTT1- C241T C913T C1059T C1758T C3037T C5183T C5907T C7471T G11083T C12534T C14408T A22320G A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT947591
 2020-07-02 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2718/2020
 ATTAAAGGTTTATACCTTCC1- C241T G1681A C3037T C14408T T19839C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MW030239
 2020-07-02 2020-09-22
 Peru SARS-CoV-2/human/PER/covper008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C6701T C9598T C14408T A22294G C25083T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030240
 2020-07-02 2020-09-22
 Peru SARS-CoV-2/human/PER/covper009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T T2886C C3037T C4002T A5872G C6539T C9430T G10097A C11704T C13536T C14408T A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_489902
 2020-07-03 2020-07-14
 United States hCoV-19/USA/MN-GMF-09031/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489940
 2020-07-03 2020-07-14
 United States hCoV-19/USA/WI-GMF-09008/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T A23403G A25048T G25563T C26625T C29614T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489943
 2020-07-03 2020-07-14
 United States hCoV-19/USA/WI-GMF-09205/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T G29431T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490704
 2020-07-03 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR3940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T C23029T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490705
 2020-07-03 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR3941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T C23029T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490706
 2020-07-03 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR3942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T C23029T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_490707
 2020-07-03 2020-07-15
 United Kingdom hCoV-19/Scotland/CVR3943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T C23029T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491728
 2020-07-03 2020-07-17
 United Kingdom hCoV-19/England/202881394/2020
 C241T T2617Y C3037T C7165T G10265A C14408T C15720T A15972G C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC

EPI_ISL_491729
 2020-07-03 2020-07-17
 United Kingdom hCoV-19/England/202881395/2020
 C241T C3037T C7165T G10265A C14408T C15720T A15972G C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC

EPI_ISL_491731
 2020-07-03 2020-07-17
 United Kingdom hCoV-19/England/202881397/2020
 C241T C3037T C6196Y C7165T G10265A C14408T C15720T A15972G C19718T G22201K G22381A A23403G C24795T G26700T T28759C GGG28881AAC

EPI_ISL_491932
 2020-07-03 2020-07-17
 Ecuador hCoV-19/Ecuador/USFQ-120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G922A C3037T C14408T T18436C C21242T A23403G GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_491939
 2020-07-03 2020-07-17
 Ecuador hCoV-19/Ecuador/USFQ-126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T A20268G A23403G AA29902-

EPI_ISL_491940
 2020-07-03 2020-07-17
 Ecuador hCoV-19/Ecuador/USFQ-127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T A20268G A23403G AA29902-

EPI_ISL_492998
 2020-07-03 2020-07-20
 Latvia hCoV-19/Latvia/063/2020
 C241T A1202G C3037T C12513T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_493683
 2020-07-03 2020-07-21
 United Kingdom hCoV-19/England/SHEF-C5CB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C C17678T A20255G A23403G GGG28881AAC C29274T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495024 MT799998
 2020-07-03 2020-07-22
 India SARS-CoV-2/human/IND/GBRC286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C313T C3037T C5700A C14408T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_495472 MT795880
 2020-07-03 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T C22987T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495481 MT795888
 2020-07-03 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C1380T C3037T T7513C C14408T T15354C C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495482 MT795889
 2020-07-03 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C14408T T19839C C19955T A23403G C23707T G25906T G27990T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495483 MT795890
 2020-07-03 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2240T C3037T C14408T C16260T C22329T A23403G C24358A G25088T G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495484 MT795891
 2020-07-03 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2549A C3037T C9448T C10815T C14408T C14599T G15732T T19143C C19806T A20268G A23403G C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495486 MT795893
 2020-07-03 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T T14191C C14408T A23403G G25563T C28821A C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495487 MT795894
 2020-07-03 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T C4226T A7837C C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495492 MT795898
 2020-07-03 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495495 MT795901
 2020-07-03 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6861T C14408T G17721T C19170T G19254T G19509A A23403G A24315T C26985T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495501 MT795907
 2020-07-03 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6627T G11083T C11379T C12921T C14408T T15354C C18877T A21852C A23403G G25563T C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495506 MT795911
 2020-07-03 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495509 MT795913
 2020-07-03 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1463A G2305T C3037T C6843A G7557A C8818T C14408T C18377T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495562
 2020-07-03 2020-07-23
 South Africa hCoV-19/SouthAfrica/KRISP-0487/2020
 AT1- C241T T2029C C3037T C6573T A12556G C14408T C16376T A23403G C24034T AT27865TA TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_498149
 2020-07-03 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T T28009C G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498564
 2020-07-03 2020-07-27
 Singapore hCoV-19/Singapore/666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACT1- C6310A C6312A C8092T G11083T C13730T C19524T C23929T C28311T C28957T ATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29792-

EPI_ISL_498622 LR862402
 2020-07-03 2020-07-27
 Switzerland 190004
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2907R T3006Y C3037T C4002T G5950K T6874Y G10097R T10210Y A10275R C13536T C14408T G19732T T20282Y A23403G C23731T C24082Y C26985Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_498624 LR862404
 2020-07-03 2020-07-27
 Switzerland 190006
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2695T C3037T G5194T A5560G A6921M A6956R G10265A C14408T C15141T G15543K A15972G G18049K T19497C C19718T C21077Y A23403G G28077T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_498626 LR862407
 2020-07-03 2020-07-27
 Switzerland 190008
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A3097M T3144K C3540Y T3576Y A3588M G5357S G5509R A5563R C5787T G9928K G10265A A12463M C14408T C15720T A15972G A17496R C19718T A23403G G26700T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_498627 LR862401
 2020-07-03 2020-07-27
 Switzerland 190010
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3142Y C4002T G5950K A6953R T7026Y G10097R C13536T C14408T G19732T A23403G C23731T C25714G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_499357
 2020-07-03 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168E65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2488T C3037T C3551T T5573C C6380T C7029Y C7420T G11801A C14408T C15960T T19839C C19955T A23403G G24586T C25275T G25552T GGG28881AAC T29607C

EPI_ISL_500769
 2020-07-03 2020-07-29
 Norway hCoV-19/Norway/2846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T C3037T C3583T C14408T T18132C A23403G G23486T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500771
 2020-07-03 2020-07-29
 Norway hCoV-19/Norway/2848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6402T C14408T A16734G A20268G T22207C A23403G G24794T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500783
 2020-07-03 2020-07-29
 Norway hCoV-19/Norway/2860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T C3037T C3583T C14408T C14676T T18132C G22363T A23403G G23486T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500927 LR862479
 2020-07-03 2020-07-30
 Switzerland 190068
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7162Y G11842A A12759G C14408T G18292T A20268G A23403G G24834R G27490K C28854T C29614T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501132
 2020-07-03 2020-07-30
 United States hCoV-19/USA/WA-UW-13291/2020
 ATTAAAGGTTTATAC1- TCCC18GGGA C241T C1059T T1927C C3037T C5239T T7747G C10319T TA14222GC C14408T A18424G T21146A G21151D C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501133
 2020-07-03 2020-07-30
 United States hCoV-19/USA/WA-UW-13293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A31T AACC34HTTH C241T C1059T T1927C C3037T C10319T T10554A AGG13512TTA C14408T A18424G C21304T A22255T A23403G T25529G T25533C T25535G GG25537AT G25563T G25907T C27964T C28472T C28869T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501134
 2020-07-03 2020-07-30
 United States hCoV-19/USA/WA-UW-13300/2020
 ATTAAAGGTTTATA1- TCCC18GGGA C28Y AAC34TTT C241T C1059T T1927C C3037T C10319T C14408T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501135
 2020-07-03 2020-07-30
 United States hCoV-19/USA/WA-UW-13306/2020
 ATTAAAGGTTTATACCT1- A31T AAC34TTT C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T -29904AAAA

EPI_ISL_501136
 2020-07-03 2020-07-30
 United States hCoV-19/USA/WA-UW-13310/2020
 ATTAAAGGTTTATA1- TCCC18GGGA A34H C36T C241T C3037T G5561A C6402T T8883C TT8885AA C10252T G10265A T10554D T11541G AGG13512TTA TA14222GC C14408T TG17178GT G17182A C17639T G18391T C19813T G22801T A23403G G23663T C27654G GGG28881AAC G29737A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501139
 2020-07-03 2020-07-30
 United States hCoV-19/USA/WA-UW-13330/2020
 ATTAAAGGTTTATA1- CCCAGGTAACAAACCAA19- CC36TA C241T C3037T C4331T C4824T C5173T C6633T T8883C TT8885AA T10554A C11960A AGG13512TTA C14115T TA14222GC C14225T C14262T C14408T C14790T TG17178GT G17182A A17697D C18877T A23403G A23779T G24038A C25665T G25767T C26571A C27527T G28001T A28715T G28872A GGG28881AAC GG29861AA G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_501140
 2020-07-03 2020-07-30
 United States hCoV-19/USA/WA-UW-13332/2020
 ATTAAAGGTTTATA1- T18K AAC34TTT C241T C1059T C3037T G9536A C14408T A23403G G25563T G29862A G29864A TG29867AA C29870A -29904AAAAAAAAAAAAAAAAAA

EPI_ISL_509251
 2020-07-03 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000598/2020
 C241T C3037T T12503C C14408T A23403G GGG28881AAC G28975T C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509270
 2020-07-03 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000618/2020
 A1- C241T C3037T C6762T T12503C C14408T A23403G G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509274
 2020-07-03 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000622/2020
 A1- C241T C3037T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_509281
 2020-07-03 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000630/2020
 C241T C3037T T12503C C14408T A23403G C24374A G25770T GGG28881AAC C29721T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_509314
 2020-07-03 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001057/2020
 ATTAAAGG1- C241T T1027C C1427T C2676T C3037T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509318
 2020-07-03 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001062/2020
 ATTA1- C241T C3037T T12503C C14408T A23403G C23638T G25770T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509319
 2020-07-03 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T8620C C14408T G17938A A20268G A23403G G26144A T29623C G29736T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_509320
 2020-07-03 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G61T C241T C3037T C14408T C22675T A23403G GGG28881AAC G29449T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509321
 2020-07-03 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001065/2020
 ATTA1- C241T C3037T A4197C C14408T G18412A A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_509331
 2020-07-03 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001077/2020
 ATTA1- C241T C3037T C9113T C14408T A19047G T22897A A23403G C28005T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509332
 2020-07-03 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001078/2020
 AT1- C241T C3037T G11447A C14408T C22675T A23403G A25168C GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_509333
 2020-07-03 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001079/2020
 ATT1- C241T C3037T A7064G C10702T C14408T C22675T A23403G C25521T C26586T T27384C GGG28881AAC C29358T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_509336
 2020-07-03 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001083/2020
 ATTA1- C241T C3037T T12503C C14408T A23403G C24374A G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509337
 2020-07-03 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3960C C4002T G10097A C13536T C14408T C18747T C19586T C21364T A23403G C23731T C28253T GGG28881AAC G29425T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_509966 MT846654
 2020-07-03 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9050T G11083T C14408T C14599T C14724T G15732T C16338T T19143C A20268G G22918T A23403G C25350T G25776T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509969 MT846657
 2020-07-03 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515028
 2020-07-03 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2626/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_515029
 2020-07-03 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2627/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29235T C29535T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_515030
 2020-07-03 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2628/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_516742
 2020-07-03 2020-08-21
 United States hCoV-19/USA/CA-CZB-3667/2020
 ATTA1- C241T C3037T C14408T G16639T A20268G C21844A A23403G T24076C C28854T G29140T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_516743
 2020-07-03 2020-08-21
 United States hCoV-19/USA/CA-CZB-3668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAG1- C241T C1684T A2015G C3037T C14408T A20268G A23403G C28854T C29732A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_516755
 2020-07-03 2020-08-22
 United States hCoV-19/USA/SC-20-1385-T10/2020
 ATTAAAGGTT1- -16TGCTCTTGCTTTGCTGCTG C241T T833C C1059T C3037T C14408T G17298T A23403G C24865T G25563T C27964T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_516762
 2020-07-03 2020-08-22
 United States hCoV-19/USA/SC-20-1413-T10/2020
 ATTAAAGGTTTATACCTTC1- C20G G24A C241T C3037T A7993G C8139T C10376T C14408T T22287C A23403G A25336T GGG28881AAC GG29861TC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_516763
 2020-07-03 2020-08-22
 United States hCoV-19/USA/SC-20-1415-T10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T T833C C1059T C3037T C14408T G17298T A23403G C24865T G25563T C27964T G29861T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_516767
 2020-07-03 2020-08-22
 United States hCoV-19/USA/SC-20-1505-T03/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C5547T C10319T C14408T G16710T G20176T A23403G T24274C A25121T G25563T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_516773
 2020-07-03 2020-08-22
 United States hCoV-19/USA/SC-20-1601-T03/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T G10262T C10319T A11411G C14408T G18951T G19656T A23403G G25563T C27964T G28881T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_517805 MT966159
 2020-07-03 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0915/2020
 ATTAAAGG1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_517808 MT966162
 2020-07-03 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_517809 MT966163
 2020-07-03 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0919/2020
 ATTA1- C241T C1059T C3037T C10319T C14408T G16585A G16710T G20176T A23403G C23525T A25121T G25563T C27964T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_517880 MT966164
 2020-07-03 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0990/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C10319T C12076T C14408T A23403G G25563T C25844T G25907T C27964T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_517882 MT966167
 2020-07-03 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0992/2020
 ATTAAAGG1- A38C T42A C241T T833C C1059T C3037T G3573A C14408T T14867C C18526T A23403G G25563T C25904T T27432C C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_517883 MT966169
 2020-07-03 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0993/2020
 ATTAA1- C241T C313T C823T C3037T G11083T C14408T G20326A A23403G G25249T C26464T GGG28881AAC C28928T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518130 MT973181
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3564T T7540C G11535T G14277T C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_518509 MT971445
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T11539C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520750 MT972438
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3037/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520752 MT972440
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520876 MT972463
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3189/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520877 MT972464
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3190/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T C15615T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520878 MT972465
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3192/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520881 MT972468
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3195/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520889 MT972476
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3203/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520890 MT972477
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3204/2020
 ATTAAAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_520891 MT972478
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520893 MT972480
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520894 MT972481
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C4755T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520896 MT972483
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3210/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_520900 MT972487
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C T27484C GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520901 MT972488
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3216/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520902 MT972489
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520904 MT972491
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521110 MT972580
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3444/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521452 MT969368
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521453 MT969369
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521537 MT972391
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521538 MT972392
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521539 MT972393
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521540 MT972394
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521567 MT969650
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22326T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521611 MT969625
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521654 MT969554
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521656 MT969556
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G14547T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521659 MT969559
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2828/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T A3082G T7540C C14408T G16647T C18555T T20459C C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521660 MT969560
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2829/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521663 MT969563
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521664 MT969564
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521667 MT969567
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521675 MT969579
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521676 MT969580
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521678 MT969582
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2847/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521679 MT969583
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521680 MT969584
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521681 MT969585
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C25433T GGG28881AAC

EPI_ISL_521682 MT969586
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_521683 MT969587
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7600T G7798T G11029T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_521684 MT969588
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_521694 MT969598
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521698 MT969602
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521705 MT969609
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2874/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521707 MT969611
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2876/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521849 MT972423
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C28629T GGG28881AAC

EPI_ISL_521850 MT972424
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C26873T C28629T GGG28881AAC

EPI_ISL_522245 MT969359
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T G11029T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_522252 MT969366
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522253 MT969367
 2020-07-03 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_523345
 2020-07-03 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_523417
 2020-07-03 2020-08-26
 Netherlands hCoV-19/Netherlands/NH-EMC-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G5950T G8102T G10097A C13536T C14408T G19732T A23403G C23731T C24082T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523635
 2020-07-03 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1404T C2523T C3037T G10265A C10641T C11758A C14408T A15027T A15828G A15972G C19718T A21137G A23403G C28087T T28759C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523636
 2020-07-03 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523639
 2020-07-03 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T G2632T C3037T C3165T C14408T C19170T G19509A C19854T C21658T A23403G C24130T G25650T C26313T GGG28881AAC G29810T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523640
 2020-07-03 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523641
 2020-07-03 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C622T C3037T G4657T T5182C C11758T C13059T C14408T C15324T G16846T C16887T C18744T A23403G C25075T C25904T C29733T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523660
 2020-07-03 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A A23403G G25523T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523661
 2020-07-03 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A A23403G G25523T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525712
 2020-07-03 2020-09-01
 United States hCoV-19/USA/WA-S2722/2020
 ATTAAAGGTTTAT1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T C28657T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525713
 2020-07-03 2020-09-01
 United States hCoV-19/USA/WA-S2723/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_525928
 2020-07-03 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18979T T19839C C20148T A23403G GGG28881AAC

EPI_ISL_525929
 2020-07-03 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0923/2020
 ATTAAAGGT1- C241T C3037T G4510T A12199G C14408T C15933T G16968T T19839C A23403G T23986C T28187C GGG28881AAC

EPI_ISL_525934
 2020-07-03 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A808T C3037T C8818T C14408T C15952T G20980A A23403G A24696C

EPI_ISL_525935
 2020-07-03 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1603G C3037T C11916T C14362T C14408T A20935G A23403G C25466T G25563T G28001A G28027T G29742T

EPI_ISL_525936
 2020-07-03 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11908G C14408T C15933T G16968T T18224C C18747T T19839C A23403G GTT26155- C28708T GGG28881AAC AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_526858
 2020-07-03 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A894G C1059T G2035T C3037T C11916T C14408T C16111T C18998T T21940C TTA22159- A23403G G25563T G25947C C28854T G29540A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_526859
 2020-07-03 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0738/2020
 ATTAAAGGT1- C241T C1059T G2035T C3037T C11916T C14408T C16111T C18998T T21940C A23403G C25207T G25563T G25947C C28854T G29540A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_526860
 2020-07-03 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A894G C1059T G2035T C3037T C11916T C14408T C16111T C18998T T21940C A23403G G25563T G25947C C28854T G29540A

EPI_ISL_526861
 2020-07-03 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T G2035T C3037T C11916T C14408T C16111T C18998T A19505W T21940C A23403G G25563T G25947C C28854T G29540A C29870A

EPI_ISL_527651
 2020-07-03 2020-09-04
 United States hCoV-19/USA/AR-CDC-4373/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527652
 2020-07-03 2020-09-04
 United States hCoV-19/USA/AR-CDC-4374/2020
 G199A C241T C1059T C2925T C3037T A12759C C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527653
 2020-07-03 2020-09-04
 United States hCoV-19/USA/AR-CDC-4375/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527654
 2020-07-03 2020-09-04
 United States hCoV-19/USA/AR-CDC-4378/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527655
 2020-07-03 2020-09-04
 United States hCoV-19/USA/AR-CDC-4380/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T G28314T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527746
 2020-07-03 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1229G A2251G C3037T G7223A G10360A C10369T C14408T A22519G A23403G G25217T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527747
 2020-07-03 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0079/2020
 ATTAAAGGT1- T11G C241T C1059T C3037T C5986T C14408T C16394T A23403G G25563T C26164T C27509T C27964T C28603T G28899A ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_536477
 2020-07-03 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-077/2020
 ATTAAAG1- C241T C442T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_536491
 2020-07-03 2020-09-16
 Peru hCoV-19/Peru/ANC-INS-092/2020
 ATTAAAG1- C241T C3037T C4002T C6196T G10097A C13536T C14408T A23403G C23731T G25249T GGG28881AAC AAAA29900-

EPI_ISL_536493
 2020-07-03 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-094/2020
 ATTAAAG1- C241T C3037T C3241A C4002T C7165T G10097A C13536T C14408T G14829K C14877T G21786T A23403G C23731T C25658T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_536494
 2020-07-03 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-095/2020
 ATTAAAG1- C241T C3037T G3052T C4002T C7764T G10097A C13536T C14408T C14877T G18106T A23403G C23731T G27459T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536495
 2020-07-03 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-096/2020
 ATTAA1- C241T C3037T G3755T C4002T G10097A G11552T C13536T C14408T A23403G C23731T G24794T A28356G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_541740
 2020-07-03 2020-09-23
 India hCoV-19/India/MH-NIV-74916/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A T13855A C14408T A23403G G24368T GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541748
 2020-07-03 2020-09-23
 India hCoV-19/India/MH-NIV-96428/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T A3063G C5700A G6410A C14408T C20384T T20949C A23403G C23604A G28209C GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_545782
 2020-07-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-8004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T C1059T C3037T C8208T G12322T C14408T G16827A C18714T C20823T G21305A A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545793
 2020-07-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-8016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T C21638T A23403G T24212G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545803
 2020-07-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-8031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1420T C3037T C6402T G9203A C10319T C14408T A23403G G25563T C26625T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545830
 2020-07-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-8064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1907C C3037T C3737T C10015T C14408T G14829T C15654T C23191T A23403G G25563T C26082T G26769T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545841
 2020-07-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-8076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1438G C3037T C4931A G9479T C14408T C14676T C17119A C18508T C23191T A23403G G25563T C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547262
 2020-07-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-6129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547289
 2020-07-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-6171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5826T C6070T T6405G A9085G C13515A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547295
 2020-07-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-6181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6522A C14408T T20697G A23403G G28179C GGG28881AAC C29274T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547344
 2020-07-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-6256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547352
 2020-07-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-6267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1385T G1738T C3037T G3242A C11094T C11916T C13536T C14408T A23403G G25563T C28087T G29332T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547378
 2020-07-03 2020-09-24
 United States hCoV-19/USA/TX-HMH-6304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C14408T C16017T A19873G A23403G C24718A C26606T T27212C G27561T C27600T C29421T G29553T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547670
 2020-07-03 2020-09-24
 United States hCoV-19/USA/WI-GMF-M00019/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C715T C1059T G2036T C3037T C4686T C11916T C14408T G14785T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548255
 2020-07-03 2020-09-25
 Sweden hCoV-19/Sweden/20-52313/2020
 G204T C241T AAGTCATTT686- C1059T G1784A C3037T C14408T G15380T G15438T G20940T A23403G G25563T T25885C

EPI_ISL_551735
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-680BC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7764T C9474T C14408T C15237T A23403G C26133T GGG28881AAC T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551736
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-680196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T G5924T C6401T C14408T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551740
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-684B94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8644C C14408T A17943G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551764
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-67901B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C11919T C14408T A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551772
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-67E09E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6673C T13111C C14408T C15237T A23403G G25784T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551773
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-67C5FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13548T C13730T C14408T A15942G G23120T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551799
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-67D7C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C11620T C14408T A20265C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551804
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-67CB71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551806
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-67F349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T G15906T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551810
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-67CC41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555509
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-663032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C2594Y A2895G C3037T C6395T A12410G C14408T C17125T C17550Y A18366G C18570Y C18788T T19839C T21093C A23403G C25703T C27884Y A28338R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555518
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-65D94F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T G15380T C18508T A23403G C23997T G24868T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555528
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-664A15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G19788A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555530
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6675E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555538
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66A8D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555555
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-664EBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9166T A9433T G10265A C14408T C19374T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555562
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-664A06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T A19650G G19788A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555569
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-665777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106T A2641G C3037T C3622T T13857C C14408T C14676T G21119T A23403G G25690T C25844T C28087T G28690T GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555591
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-65E28F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9399T T9630C C14408T A16882M A23403G C24138T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555603
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-666DDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555605
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-667DCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3583T G10097A T13216G C14408T C17333T A23403G C23731T G25500T T25502A T25751C C28720T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555610
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-669D44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G11083T C14408T G18651T A23403G C23731T C24378T T24763C G25757T C28093T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555612
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-661429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8640T G10097A G11906C A12180G C14408T A19228G A23403G C23731T C26198T G26526T G28580T C28720T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555624
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-662DF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18570T C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555625
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-666266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555639
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-668370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2163C C3037T C9559T A9848G G10097A A10957G C14318T C14408T A23403G C23731T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555644
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-661CB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555645
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-661DB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C2143T C3037T G4088A C14408T C18788T T19839C C23230T A23403G -25700CCC C28171T GGG28881AAC A28995G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555646
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66217C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C12473T T12548C C14408T C14599T A19650G G21538A A23403G C26645T C26894T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555648
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6670B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555649
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66839E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C11653T C14408T G15380T C16575T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555675
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66613C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555676
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-666390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555684
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-661F46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555688
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-661B51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T C17333T A23403G C23731T T25751C C28720T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555691
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-65DB76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G A27400G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555701
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66580B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G8353A C8950T G10097A C13536T C14408T G19009T A23403G C23731T G27632T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555704
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-664BD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9166T A9433T G10265A C14408T C19374T A19650G A23403G G27916A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555722
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-65D9C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10202T G11447A C14408T C17135T C21648T A23403G C28312T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555723
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-65D736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555730
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-666828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555737
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-664954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T G4642A C8078T G10265A C14408T G15543T C22550T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555743
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66A5B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A A10957G C14318T C14408T A23403G C23731T C28253Y G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555751
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-666381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G G14290T C14408T C17125T G17790T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555757
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66614B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556135
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CFFA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A A6683- C6720Y C12741T C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556302
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6CFA54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5230K A9433T G10265A C10401T C14408T G14632A A19650G G21123T A23403G G25459T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557765
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-63931E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G521T T2882G C3037T C10369T C12484T C14408T G18412T G18674A C19140T A23403G G23501T GGG28881AAC G28939T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557793
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-639509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G521T T2882G C3037T C10369T C12484T C14408T G18412T G18674A C19140T C23170Y A23403G G23501T GGG28881AAC G28939T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557986
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-658A7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T A23403G A24367G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557991
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6762FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C11919T C14408T A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557993
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66AC0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G A5877G G10097A C14408T A20055G A23403G C23731T C24370T G25947T T28723C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557995
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-67361F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558003
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66DFA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T A17841G C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558005
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-65781B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T A9433T TAT9858- G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558007
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66E0A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4832T C7113Y C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558012
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6461AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9744G C14408T C19011T A23403G C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558014
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66DCCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T A9433T G10265A C14408T C16293Y A19650G C20133Y A23403G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558015
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-644B72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T T25992C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558018
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-65C98C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T T1507C C3037T G11083T C13665T C14408T C15960T G16741T A23403G C26464T C28315T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558019
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6598DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558022
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-646439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T C28332T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558026
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-66CDAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C13247T C14408T C14937T T18144C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558027
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-658FAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558029
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66C4E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A T14238C C14408T A19650G G20857A G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558034
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6763E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174T C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558040
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-670050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575Y C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558047
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-65859B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558048
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-65858C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A23403G C26029A C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558049
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-64AC5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3156T C6016T G10097A C14408T G19518T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558053
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-673BD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635Y C3037T T10513C C11669T C14408T C17678T G19086T A23403G T27851C GGG28881AAC C29541T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558059
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-65C2AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1971C C3037T G10265A C14408T A23403G G27364T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558066
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-673C86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1692C C3037T C8772T C14408T C21637T A23403G C24865T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558075
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-673B7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8727T C10277Y C14408T C21637T A23403G A28169G GGG28881AAC A29567G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558077
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-676236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C G10097A C13536T C13730T C14408T T20427A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558078
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-656DFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C17634A C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558080
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6761B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T C20555T A23207G A23403G C28603T GGG28881AAC C29363M CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558081
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-65615D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T A20055G C21614T A23403G C23731T C25701A G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558082
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6530CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558085
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-658C87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1263T C3037T C4391A C14408T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558086
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-671A24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T C20555T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558091
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-655FBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C384T C3037T C13665T C14408T A23403G A24367G C26464T GGG28881AAC G29742K G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558095
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66F661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C583T C3037T T5507A C8597T C14408T C18457T A20268G A23403G G28628K C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558096
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-66C93E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C13247T C14408T C14937T T18144C G22225T A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558097
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6570D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C17634A C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558099
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-64642A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558100
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-64D827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8727T C14408T C21637T A23403G A28169G GGG28881AAC A29567G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558105
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66ABC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T A23403G G24368T C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558108
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66DD6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C5284Y G10097A C13536T C14408T A17841G C18115T G22199T A23403G C23731T C25603Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558110
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66ACDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A G11534A C14408T C15848T G19254T T19893C C23248T A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558118
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66EDE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3738T C4832T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558119
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66B331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T C19495T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558121
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66D232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558122
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-65920C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T G4642A G10265A C14408T A23403G T25711C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558125
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-658AF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219A C241T C3037T C13665T C14408T A23403G A24367G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558133
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66DEE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C16887T A23207G A23403G C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558137
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66B137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T G14559A C20762T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558140
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-652F57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558146
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66E6AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2501G C3037T C6395T G10565C A12410G C14408T A18366G C18788T T19839C T21093C C22323T A23403G C23557T T25569C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558147
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-655E66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC TGAACAATGC29765- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558151
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66E222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558153
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6532E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558154
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66EE97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3738T C4832T C11289T C14408T T15051C A20255G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558166
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6749CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558168
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-658829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C G10097A C13536T C13730T C14408T T20427A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558169
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-658504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C G10097A C13536T C13730T C14408T T20427A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558171
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6765C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6196Y C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558181
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-65C209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558186
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-671A42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5010T C14408T T15648C A23403G A27421G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558190
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66EA48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2501G C3037T G3728K C6395T G10565C A12410G C14408T A18366G C18788T T19839C T21093C C22323T A23403G C23557T T25569C GGG28881AAC CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836Y

EPI_ISL_558191
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-65BF30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17835C C19951T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558193
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-655E39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2641G C3037T C3177T C3622T G4024T G4510T C14408T G19481T A23403G G25654T C25844T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558195
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-6754AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C3037T C5482T C14408T G17944T C18747T A22182G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558196
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-658A8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C G20398R A23403G C24642T G25543A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558199
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-672355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558207
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-647F46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5010T C14408T T15648C A23403G A27421G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558210
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-67654C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T A17841G C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558219
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-658944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C1437T C3037T G11083T C13665T C14408T C15960T G16741T A23403G C26464T C28315T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558220
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66B638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T A23403G A27691T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558221
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66B1BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T T11320C C14408T A23403G G28085T T28306C GGG28881AAC G29260A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558223
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-673B98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8727T C10277Y C14408T C21637T A23403G A28169G GGG28881AAC A29567G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558226
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66F115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A21868T A23403G G27967T GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558227
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-68C3FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7948T G10097A C13536T C14408T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558228
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-653017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558232
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66F379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558233
 2020-07-03 2020-09-28
 United Kingdom hCoV-19/England/ALDP-66C822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16887T C21637T G22104T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560984
 2020-07-03 2020-09-30
 Sweden hCoV-19/Sweden/20-52281/2020
 C241T C823T C3037T C8770T C14408T A23403G T26301C GGG28881AAC

EPI_ISL_564286
 2020-07-03 2020-09-30
 Australia hCoV-19/Australia/VIC7212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T4303C T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_566095
 2020-07-03 2020-10-01
 United States hCoV-19/USA/GA-CDC-5110/2020
 C241T C1288T G1298A C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_566101
 2020-07-03 2020-10-01
 United States hCoV-19/USA/GA-CDC-5119/2020
 C241T C1288T G1298A C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A AAAAAAAAAAAAAAAAAAAAA29883-

MT947563
 2020-07-03 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2722/2020
 ATTAAAGGTTTAT1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T C28657T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT947593
 2020-07-03 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2723/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

MT968057
 2020-07-03 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4373/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MT968058
 2020-07-03 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4374/2020
 G199A C241T C1059T C2925T C3037T A12759C C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MT968059
 2020-07-03 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4375/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MT968060
 2020-07-03 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4378/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MT968061
 2020-07-03 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4380/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T G28314T AAAAAAAAAAAAAAAAAAAAA29883-

MW030232
 2020-07-03 2020-09-22
 Peru SARS-CoV-2/human/PER/covper001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C442T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030246
 2020-07-03 2020-09-22
 Peru SARS-CoV-2/human/PER/covper015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C14408T G17427T A23403G C26111T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030247
 2020-07-03 2020-09-22
 Peru SARS-CoV-2/human/PER/covper016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C3241A C4002T C7165T G10097A C13536T C14408T G14829K C14877T G21786T A23403G C23731T C25658T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030249
 2020-07-03 2020-09-22
 Peru SARS-CoV-2/human/PER/covper018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T G3755T C4002T G10097A G11552T C13536T C14408T A23403G C23731T G24794T A28356G GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030250
 2020-07-03 2020-09-22
 Peru SARS-CoV-2/human/PER/covper019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C583T C3037T C4002T G10097A C13536T C14408T A17521G A23403G C23731T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_489941
 2020-07-04 2020-07-14
 United States hCoV-19/USA/WI-GMF-09168/2020
 C241T C715T C1059T G2036T C3037T C11916T C14408T AA21550MW G23311T A23403G A23586G A25381M G25563T A25814R AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489942
 2020-07-04 2020-07-14
 United States hCoV-19/USA/WI-GMF-09171/2020
 ATTAAAG1- C241T C715T C1059T C1480T G2036T C3037T C11173T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490562
 2020-07-04 2020-07-15
 United Kingdom hCoV-19/England/NOTT-11269F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_491732
 2020-07-04 2020-07-17
 United Kingdom hCoV-19/England/202881398/2020
 C241T C3037T C7165T G7344R G10265A C14408T C15720T A15972G T18083Y C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC

EPI_ISL_491733
 2020-07-04 2020-07-17
 United Kingdom hCoV-19/England/202881399/2020
 C241T C3037T C7165T G10265A C14408T C15720T A15972G C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC

EPI_ISL_491734
 2020-07-04 2020-07-17
 United Kingdom hCoV-19/England/202881400/2020
 C241T C3037T C7165T G10265A C14408T C15720T A15972G C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC G29810K

EPI_ISL_491735
 2020-07-04 2020-07-17
 United Kingdom hCoV-19/England/202881401/2020
 C241T C556T C1912T C3037T C4002T A7758G G9479T G10097A G10265R C13536T C14408T G21220T A23403G C23731T T24063C A25948G C27476T GGG28881AAC

EPI_ISL_493693
 2020-07-04 2020-07-21
 United Kingdom hCoV-19/England/SHEF-CA275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1187C C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495025 MT800005
 2020-07-04 2020-07-22
 India SARS-CoV-2/human/IND/GBRC287/2020
 ATTAAAGGTTTATACCTTCC1- C241T C3037T C14408T A23403G C29272T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_495462 MT795872
 2020-07-04 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C25276T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495468 MT795876
 2020-07-04 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G2036T C3037T C4686T C11916T C14408T G23311T A23403G A23586G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495474 MT795882
 2020-07-04 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495480 MT795887
 2020-07-04 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495493 MT795899
 2020-07-04 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T G2035T C3037T G7743T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495499 MT795905
 2020-07-04 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11074T G11083T C12025T C14408T T19839C A23403G C23707T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495505 MT795910
 2020-07-04 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C A1982G C3037T G3871T T3931C C4226T C5672T A7837C C14408T G15646A G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497829
 2020-07-04 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11074T G11083T C13051T C14408T C19572T C21597T A23403G G23593T A27224C GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498584
 2020-07-04 2020-07-27
 Singapore hCoV-19/Singapore/686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C6310A C6312A C9693T G11083T C12400T C13730T C19524T T21775C C23929T C28311T A29287G AAAAAAAAAAAA29892-

EPI_ISL_500574
 2020-07-04 2020-07-29
 Ireland hCoV-19/Ireland/70IRL97963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7771C C14408T G14792T C19017T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500575
 2020-07-04 2020-07-29
 Ireland hCoV-19/Ireland/70IRL98345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T C18877T C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500576
 2020-07-04 2020-07-29
 Ireland hCoV-19/Ireland/70IRL98816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1415T C3037T C14408T C18248T C18814T C18877T TAT22189- C22444T A23403G G25563T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500577
 2020-07-04 2020-07-29
 Ireland hCoV-19/Ireland/70IRL98924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7771C C14408T C19017T A23403G C28333T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500578
 2020-07-04 2020-07-29
 Ireland hCoV-19/Ireland/71IRL00996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T C18877T C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500929 LR862485
 2020-07-04 2020-07-30
 Switzerland 190071
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G1590R C3037T T6954W C11471T C12789Y C14408T T17675Y C19524T G22205C A23403G G24368K C25731T GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500932 LR862495
 2020-07-04 2020-07-30
 Switzerland 190074
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C5175Y C13133T C14408T T15039C C16887Y A23403G G26718T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_509275
 2020-07-04 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000623/2020
 AT1- G105T C241T C3037T C6762T A9439G T11186C T12503C C14408T C18457T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509317
 2020-07-04 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001061/2020
 ATTA1- C241T C3037T T12503C C14408T A23403G GGG28881AAC A29221G C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509330
 2020-07-04 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G C23625T T27438C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_513287
 2020-07-04 2020-08-12
 United States hCoV-19/USA/FL-AJ50/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C5622T A7606G C12439T C14408T T15354C C18029T C18877T A23403G G25563T C29614T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_513288
 2020-07-04 2020-08-12
 United States hCoV-19/USA/FL-AJ53/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C815T C3037T C3411T T10795C C14408T C18452T A19673G A23403G G25437T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_513290
 2020-07-04 2020-08-12
 United States hCoV-19/USA/FL-AJ5H/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C10319T C14408T G16912T A23403G G25563T C27945T C27964T A28995T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860C

EPI_ISL_515027
 2020-07-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2624/2020
 ATTAAAG1- C241T C1059T C3037T G8179A C11916T C14408T C16650T C18928T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_515031
 2020-07-04 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2629/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T G8179A C11916T C14408T C16650T C18928T A20675T A23403G G25563T G29179T G29779T ACAAAAAAAAAAAAAA29869-

EPI_ISL_520250 MT972625
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3494/2020
 ATTAAAGGT1- C241T A1163T C1929T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520282 MT972657
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T7540C C9110T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C28732T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520791 MT972518
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G24301A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520792 MT972519
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3085/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520793 MT972520
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T A14439G G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520794 MT972521
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520795 MT972522
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C T27484C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520796 MT972523
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520797 MT972524
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520799 MT972526
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520800 MT972527
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3093/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520801 MT972528
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3094/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520804 MT972532
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520805 MT972533
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3098/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G G27047A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520806 MT972534
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3099/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520807 MT972535
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A T23293C G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520809 MT972537
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520810 MT972538
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520811 MT972539
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3104/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520812 MT972540
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520813 MT972541
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520814 MT972542
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3107/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T A3082G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520841 MT972570
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520874 MT972461
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520879 MT972466
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3193/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T6649A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520882 MT972469
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7120G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520888 MT972475
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_520898 MT972485
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3212/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520899 MT972486
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_520921 MT972508
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C3784T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520922 MT972509
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3241/2020
 ATTAAAGGT1- C241T A1163T C3037T G7295T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520923 MT972510
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520924 MT972511
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28846T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521541 MT972395
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2703/2020
 ATTAAAGGT1- T10G C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521543 MT972397
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521545 MT972399
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A3082G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521546 MT972400
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521548 MT972402
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521549 MT972403
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2711/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521550 MT972404
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C11109T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521551 MT972405
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521552 MT972406
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521553 MT972407
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521554 MT972408
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC

EPI_ISL_521555 MT972409
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T C7600T G7798T C14408T C14599T A23403G T23548C A28416C GGG28881AAC

EPI_ISL_521556 MT972410
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521557 MT972411
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521558 MT972412
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T T20550G G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521559
 2020-07-04 2020-08-25
 Australia hCoV-19/Australia/VIC2722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C T10975C C14408T G16647T C18555T C20629T C22295T G22992A G23401A A23403G TTTGTGCTTTTT27785- GGG28881AAC

EPI_ISL_521560 MT972413
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521576 MT969659
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T C14724T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521579 MT969662
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T C14724T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521587 MT969670
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T C14724T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521626 MT969528
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521666 MT969566
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521668 MT969568
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521669 MT969569
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521670 MT969570
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521677 MT969581
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2846/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521693 MT969597
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521695 MT969599
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521697 MT969601
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521699 MT969603
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521700 MT969604
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521701 MT969605
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2870/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25487T GGG28881AAC

EPI_ISL_521702 MT969606
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2871/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521704 MT969608
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521708 MT969612
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521715 MT969619
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC

EPI_ISL_521726 MT969702
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1225T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521842 MT972415
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C7600T G7798T C14408T C14599T A23403G T23548C GGG28881AAC

EPI_ISL_521843 MT972416
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3014/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521844 MT972417
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3015/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521845 MT972418
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522247 MT969361
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_522249 MT969363
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522250 MT969364
 2020-07-04 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522474
 2020-07-04 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A19298G C21846T A23403G GGG28881AAC T29867C

EPI_ISL_522478
 2020-07-04 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2698/2020
 ATTA1- C241T C3037T C9430T C14408T A19702G C21952T T22020C A23403G GGG28881AAC T29479C T29867A

EPI_ISL_523041
 2020-07-04 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-18-14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T5028A T15621C C17410T A22920T C26078T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523042
 2020-07-04 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-18-15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T5028A T15621C C17410T A22920T C26078T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523043
 2020-07-04 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-18-17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T3843A T5028A C17410T G19816T G22661T A22920T G25647A C25658T C26078T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523044
 2020-07-04 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-18-20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C G520A ATG1605- T5028A C8860T C17410T A22920T A25425C C26078T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523045
 2020-07-04 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-18-8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- C4542A T5028A C11074T C17410T A22920T C26078T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523416
 2020-07-04 2020-08-26
 Netherlands hCoV-19/Netherlands/NH-EMC-47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C10029T C11109T C12415T C14408T G17790T T19159G A23403G C25006T G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523644
 2020-07-04 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523645
 2020-07-04 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C367T G1590A C3037T G5230T C6317T C14408T A21012G C23373T A23403G T27299C GGG28881AAC T29148C C29659T G29744T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523646
 2020-07-04 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C186T C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T A11782G C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523647
 2020-07-04 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523648
 2020-07-04 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523649
 2020-07-04 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524445
 2020-07-04 2020-08-28
 Singapore hCoV-19/Singapore/743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1191T T5798C C6310A C6312A G11083T G11719A C13730T A14033C C19524T C23185T C23929T C27416T C28311T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524892
 2020-07-04 2020-08-28
 United States hCoV-19/USA/MD-MDH-0127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T A12121G C14408T C14649T G16741A A23403G G24751T G25563T G27621A T27682C C29635T

EPI_ISL_525937
 2020-07-04 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2015G C3037T C6578T C9541T G11083T C14408T C16308T G20167A A23403G C24502A GGG28881AAC

EPI_ISL_525938
 2020-07-04 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2884C C3037T G4285T C9778T C14408T A20268G A23403G C28854T C28887T

EPI_ISL_526389
 2020-07-04 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A9740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C1912T C3037T G4180T T10453Y G11083T C11195T C14408T A23403G A25003G GGG28881AAC C29870A

EPI_ISL_527027
 2020-07-04 2020-09-03
 Australia hCoV-19/Australia/NSW2503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10792C C14408T T19839C A23403G C27513T GGG28881AAC C28905T G29465T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527028
 2020-07-04 2020-09-03
 Australia hCoV-19/Australia/NSW2507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C9430T C10582T G11521T C12823T C14408T G22335T A23403G GGG28881AAC T28921C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527029
 2020-07-04 2020-09-03
 Australia hCoV-19/Australia/NSW2508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C9430T C10582T G11521T C12823T C14408T G22335T A23403G GGG28881AAC T28921C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527030
 2020-07-04 2020-09-03
 Australia hCoV-19/Australia/NSW2510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4331T C5869T G10265A C10277T C14408T A15972G C19718T A23403G C23929T T28759C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527031
 2020-07-04 2020-09-03
 Australia hCoV-19/Australia/NSW2511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527032
 2020-07-04 2020-09-03
 Australia hCoV-19/Australia/NSW2512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12053T C14408T C17274T G22225T A23403G G25088T GGG28881AAC T29128C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527034
 2020-07-04 2020-09-03
 Australia hCoV-19/Australia/NSW2515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8861A A12075G C14408T G16078A C18877T G22021T C22444T G23311T A23403G G25563T C26735T C28854T G29747T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_536485
 2020-07-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-086/2020
 ATTAAAG1- C241T C3037T C6701T C9598T C14408T A22294G C25083T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536486
 2020-07-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-087/2020
 ATTA1- C241T T2886C C3037T C4002T A5872G C6539T C9430T G10097A C11704T C13536T C14408T A23403G C23731T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_536487
 2020-07-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-088/2020
 ATTAAAG1- C241T C3037T C4002T C7926T G10097A C13536T C14408T T17865C A23403G C23731T C25642T T27471C GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536488
 2020-07-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-089/2020
 ATTAAAG1- C241T C3037T C3768T C4002T G10097A C13536T C14265T C14408T G17721T A21131G A23403G C23731T C27213T C27513T GGG28881AAC

EPI_ISL_536489
 2020-07-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-090/2020
 ATTAAAG1- C241T G1439T C1663T C3037T C14408T C18086T C18568T A23403G A26530G G28899T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536492
 2020-07-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-093/2020
 A1- C241T C3037T C14408T G17427T A23403G C26111T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536498
 2020-07-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-099/2020
 ATTAAAG1- C241T C3037T C4002T G10097A C13536T C14408T C14877T A23403G C23731T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_536499
 2020-07-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-100/2020
 ATTAAAG1- C241T C1404A C3037T C11956T C14408T G19726T T19839C A23403G GGG28881AAC C29358T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_536500
 2020-07-04 2020-09-16
 Peru hCoV-19/Peru/LIM-INS-101/2020
 ATTAAAG1- C241T C3037T C5907T G14268A C14408T C15277T A21917G A23403G C25317T C25872T A26530G TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_545776
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-7995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A A2568G C3037T T9742C C11020T C14408T C17639T C21871T A23403G T26424A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545804
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-8032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3662C C6751T T10093C C10319T G11801A C14408T A18424G C21304T A23403G C24106T G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545842
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-8077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1171C G2282A C3037T T9742C C9979T C10626T C14408T C17639T A23403G C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545960
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T C28308T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545967
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C1170T C3037T C14408T G15908T C17069T A23403G G25563T C26801T C27297T A27756G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545983
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T T5290C G6094T C14408T T16425G C17639T A23403G G25563T C26455T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545985
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A574G C1059T C3037T C11758T C14408T C16260T C18693T A23403G C23625T G25563T C27294T G27459T G27955A C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545987
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T C6336T T9742C C10626T C14408T C17639T A23403G C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545988
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C3037T C3551T A8233G G11083T C12053T C14408T T16425G C17639T A19055G C22388T A23403G G25563T C26455T T28648C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545994
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1238T T1936C C3037T C13487T C14408T C16260T T20331C C21707T A23403G C23557T G25563T G26690T G27214T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547216
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14362A C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547236
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10138T A10323G C14408T T15276A A20262G A20536C A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547269
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A C14408T C17746T G21159T A23403G G25563T C27964T G28903T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547296
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6304G C14408T G17972A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547297
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C9207T C12880T C14408T C16017T T19284C A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547298
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C8208T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547301
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C12374T C14408T C15763T A23403G G25563T C27964T C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547302
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A C18166T A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547306
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G709T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547310
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4246A T6353C C10626T C11916T C14408T C16323T C19018T A23403G T23978C G25563T C28801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547314
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2086T C3037T C10319T G11113T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547379
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C2434T C3037T G5572T A6546G G9802T C14408T C16428T A23403G A27961T G28179C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547381
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C10560T C14408T C17639T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547384
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G G13618T C14408T C20474T A23403G GGG28881AAC C29375T G29465C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547387
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T C24130T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547396
 2020-07-04 2020-09-24
 United States hCoV-19/USA/TX-HMH-6332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6926T G9928T C14408T C20474T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555697
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6661E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556109
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-6422BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556112
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-6438C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2223T C3037T C4002T A9922C G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556116
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-642CCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3569G C3695T A6211G A8659G A9883G C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556139
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-642AA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C19488T A23403G T25851C C26527T C28391T GGG28881AAC C29659T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556155
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6397D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556163
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-641735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C13247T C14408T C14937T T18144C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556166
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-642B74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C19488T A23403G T25851C C26527T C28391T GGG28881AAC C29659T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556190
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6353A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A G12817T C13536T C14408T T17778Y G22199T A23403G C23731T G24004A C28725Y GGG28881AAC C28896T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556196
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-635251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556198
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-632922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T65C C241T C3037T C6500A T11587C A13953G C14408T C20429T C21242T A23403G G26450T GGG28881AAC C28890T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_556204
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-63E7C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T G8371T G11083T C14408T C17746T G19962T G21770T C22477T A23403G G25563T T27802G C28292A G28881T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556206
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-639AEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2135T C3037T T6394C A9433T G10265A C14408T G14632A A19650G G21123T A23403G G25459T T25478G G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556223
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-6426BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4084T G5716A C6568T C6628T C7528T C8139T C9298T A10286G C14408T T17313C C19524T A22116G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556237
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-6425A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C2113T C3037T A5317G C14408T A16474G G20996T T22207Y A23403G G25912T GGG28881AAC C29045T C29269A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556248
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-63E6D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T G8371T G11083T C14408T C17746T G19962T G21770T C22477T A23403G G25563T T27802G C28292A G28881T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556261
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-642628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4084T G5716A C6568T C6628T C7528T C8139T C9298T A10286G C14408T T17313C C19524T A22116G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556263
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-630B88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21606T A23403G C24374T G25681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556265
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-63CBF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8727T C14408T C21637T A23403G A28169G GGG28881AAC A29567G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556266
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-642D7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13548T C13730T C14408T A15942G G22801K G23120T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556276
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-63F846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C11003T T13417C C14408T A23403G C25896T G25963A GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556279
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-63B7A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8727T C14408T C21637T A23403G A28169G GGG28881AAC A29567G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556281
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-63C6D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7237C C8727T C14408T C21637T A23403G A28169G GGG28881AAC A29567G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556289
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-632FD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T A23403G G25563T C28087T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556294
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-642D32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T T17781C A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556301
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-638A56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557003
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-8D9BE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557781
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-639D7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T C5339Y G8371T G11083T C14408T C17746T G19962T G21770T C22477T A23403G G25563T T27802G C28292A G28881T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557784
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-63BB9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4596T C10702T C11020T T11915G A11992T C12100A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557869
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-63A799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4456T C14408T C16394T C19170T G19509A A21509G A23403G G25906T GGG28881AAC T29568C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557878
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-639C22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T G8371T G11083T C14408T C17746T G19962T G21770T C22477T A23403G G25563T T27802G C28292A G28881T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557890
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-63A025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7945T C9430T C14408T A23403G C26022T G26918T C28093T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557919
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-63BE2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T T3412K C5621T G9479T C14408T A20288C A23403G G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557940
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-636663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13548T C13730T C14408T A15942G G23120T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557972
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-639CF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7945T C9430T C14408T C21859T A23403G C26022T G26918T C28093T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557990
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-651C9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3698T C14408T A23403G T27264G A28765T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557994
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6456CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T C16887T A19650G G21538A A23403G C25378T G25440T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557998
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-64B601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G T27017C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558021
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-64F4B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13548T C13730T C14408T A15942G G23120T A23403G G25429T T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558025
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6440BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A T13216G C14408T C17333T C20823T A23403G C23731T T25751C C28720T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558037
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-65409E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C3037T C4002T G10097A G10877A C13536T C14408T A23403G C23731T C27509T C28542T GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558041
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-64FFB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558042
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-651AEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T -11072TTC C14220T C14408T T19893C A23403G C24370T C25728T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558044
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6511BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9744G C14408T C19011T A23365G A23403G G24199T GGG28881AAC C29272T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558045
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6471E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558057
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-64C22A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1415T C3037T A9483R C14408T A23403G G24620T C27889T GGG28881AAC G29825A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558062
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6485BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T C17339T A20268G C21614T A23403G C26456T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558067
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-64B48F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C10078T C14408T A23403G C23635T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558072
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-645670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19951T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558088
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-64DEAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C25626T C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558098
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-650AB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8640T G10097A G11906C A12180G C14408T A19228G A23403G C23731T C26198T G26526T G28580T C28720T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558102
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-64CEBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G G10097A C14408T A20055G C21614T A23403G C23731T C25701A G25947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558112
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-64A3A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C10078T C14408T A23403G C23635T C28674Y GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558114
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-647EFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10198Y C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558115
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-647D88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5010T C14408T T15648C A23403G A27421G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558124
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-64A30B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G343T C3037T A8884G C14408T G21220T T22756C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558139
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-644D9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G4201R G8353A C8950T G10097A C13536T C14408T G19009T A23403G C23731T G27632T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558148
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-643F1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6401T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558155
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-654007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C841T C1714T C2048T C3037T T5092C C5724T C8092T A13516G C14408T G18816T G19999T A20268G C20451T A23403G A27675C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558158
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-647CE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7948Y C9603Y G10097A C13536T C14408T G22199T A23403G C23557Y C23731T C26333Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558160
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6495E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C10078T C14408T A23403G C23635T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558170
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6517D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558172
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-646BE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558173
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-644F1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G8353A C8950T G10097A C13536T C14408T G19009T A23403G C23731T G27632T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558174
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/Wales/ALDP-643F68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G A27400G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558180
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6507D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8640T G10097A G11906C A12180G C14408T A19228G A23403G C23731T C26198T G26526T G28580T C28720T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558182
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-651BAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T -11072TTC C14220T C14408T T19893C A23403G C24370T C25728T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558192
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-64AB30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A21868T A23403G G27967T GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558197
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-650B64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8640T G10097A G11906C A12180G C14408T A19228G A23403G C23731T C26198T G26526T G28580T C28720T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558203
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-647D3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19140T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558212
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-652045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9744G C14408T C19011T A23403G C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558213
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-64E0F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T T7774G C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_558235
 2020-07-04 2020-09-28
 United Kingdom hCoV-19/England/ALDP-64831C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8072G C11919T C14408T A23403G A25243G C25919T C26801T GGG28881AAC A29827G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561229
 2020-07-04 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-1424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTCATGTTA510- C1059T C3037T C9891T C14408T C21736T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564114
 2020-07-04 2020-09-30
 Australia hCoV-19/Australia/VIC6882/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

MT937317
 2020-07-04 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T A12121G C14408T C14649T G16741A A23403G G24751T G25563T G27621A T27682C C29635T

MW030241
 2020-07-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T C7926T G10097A C13536T C14408T T17865C A23403G C23731T C25642T T27471C GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030242
 2020-07-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C3768T C4002T G10097A C13536T C14265T C14408T G17721T A21131G A23403G C23731T C27213T C27513T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030243
 2020-07-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T G1439T C1663T C3037T C14408T C18086T C18568T A23403G A26530G G28899T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030245
 2020-07-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T C6196T G10097A C13536T C14408T A23403G C23731T G25249T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030248
 2020-07-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T G3052T C4002T C7764T G10097A C13536T C14408T C14877T G18106T A23403G C23731T G27459T GGG28881AAC C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030253
 2020-07-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C1404A C3037T C11956T C14408T G19726T T19839C A23403G GGG28881AAC C29358T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030254
 2020-07-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C5907T G14268A C14408T C15277T A21917G A23403G C25317T C25872T A26530G C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

MW030255
 2020-07-04 2020-09-22
 Peru SARS-CoV-2/human/PER/covper024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGT1- C241T C3037T C4002T G10097A C13536T C14408T C17436T A23403G C23731T G27478T GGG28881AAC G29179T C29675- ATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29697-

EPI_ISL_489903
 2020-07-05 2020-07-14
 United States hCoV-19/USA/MN-GMF-09331/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T T4051C G10981T C14408T C18486T A20268G T22162C A23403G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490561
 2020-07-05 2020-07-15
 United Kingdom hCoV-19/England/NOTT-112662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495461 MT795871
 2020-07-05 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495467 MT795875
 2020-07-05 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9721C C12025T C14408T T19839C C19955T A23403G C23707T G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495470 MT795878
 2020-07-05 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495485 MT795892
 2020-07-05 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T A21137G A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495494 MT795900
 2020-07-05 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C A5553G C7823T C11074T C14408T G21438T A23403G C25710T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495496 MT795902
 2020-07-05 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495498 MT795904
 2020-07-05 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T C19151T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495500 MT795906
 2020-07-05 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4232T C9120T C14408T A19899T A21464G A23403G G25444A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495504 MT795909
 2020-07-05 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T C6255T A7837C C10279T C14408T G19677T G20056A A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499972
 2020-07-05 2020-07-28
 United Kingdom hCoV-19/England/CAMB-1B5643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1620G C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500933 LR862494
 2020-07-05 2020-07-30
 Switzerland 190075
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A68T C241T C3037T A3132W T3142Y T3144W G5138C T6890W G11083T C14408T A20742C A23403G C26447Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500934 LR862497
 2020-07-05 2020-07-30
 Switzerland 190076
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2905H C3037T T3144K A5563R C6267T T6996Y C8318T T9961C G10265A C13548Y C14408T A15972G C16178T G19648T C19718T G21372K A23403G A25492G T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500935 LR862498
 2020-07-05 2020-07-30
 Switzerland 190078
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G5950K G10097R C13536T C14408T G19732T A23403G C23731T C24082Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_513289
 2020-07-05 2020-08-12
 United States hCoV-19/USA/FL-AJ5C/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C815T C3037T C3411T T10795C C14408T C18452T C21767G A23403G G25437T C28253T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_513291
 2020-07-05 2020-08-12
 United States hCoV-19/USA/FL-AJ5U/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C673T C3037T T4125C C10626T C14408T C14805T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515032
 2020-07-05 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2630/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G C24133T G25563T C25840T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_515594
 2020-07-05 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002196/2020
 ATTAAAGG1- C241T C3037T A7064G C14408T C22675T A23403G C25521T C26586T T27384C GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_516611
 2020-07-05 2020-08-21
 Mexico hCoV-19/Mexico/BC-InDRE_51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G5668A C5884T C14408T A20268G A23403G A23583T C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518483 MT971419
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518484 MT971420
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5677/2020
 ATTAAAGGTTTATACC1- C241T A1163T C1601T C3037T C4999T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_519385 MT972588
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C A11595G C14408T G16647T C18555T C22480T G22992A G23401A A23403G C26895Y GGG28881AAC

EPI_ISL_520251 MT972626
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520252 MT972627
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520254 MT972629
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520255 MT972630
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_520256 MT972631
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520257 MT972632
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520259 MT972634
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3504/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520260 MT972635
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520261 MT972636
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520262 MT972637
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520537 MT970188
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3425T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520570 MT970178
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T A22525G G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520571 MT970179
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3858/2020
 ATTAAAGGTTTATACCTTCCC1- C241T A1163T C3037T C3425T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520753 MT972441
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3040/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520754 MT972442
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3425T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520755 MT972443
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A3082G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520756 MT972445
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520757 MT972446
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3044/2020
 ATTAAAGGTTTATAC1- C241T A1163T G1462A C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520758 MT972447
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3045/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520759 MT972448
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520762 MT972451
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3049/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T C15654T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520798 MT972525
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3091/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520824 MT972553
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520843 MT972517
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520883 MT972470
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520884 MT972471
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520885 MT972472
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520886 MT972473
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3200/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520892 MT972479
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C9778Y C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520915 MT972502
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3233/2020
 ATTAAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520917 MT972504
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520918 MT972505
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3237/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520919 MT972506
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3238/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520920 MT972507
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3239/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_520973 MT969936
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_521052 MT969953
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_521058 MT969960
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3379/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_521104 MT972573
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521114 MT972584
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3448/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T A1163T A2948G C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521115 MT972585
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521116 MT972586
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T G1439A C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_521118 MT972589
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521119 MT972590
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C T27484C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521120 MT972591
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521133 MT972604
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521136 MT972607
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521137 MT972608
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3476/2020
 ATTAAAGGTTT1- C241T G343A A1163T C3037T T7540C A11600G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521138 MT972609
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521139 MT972610
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521140 MT972611
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521150 MT972621
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A25958G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521151 MT972622
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T A19073G G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_521561 MT972414
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521563 MT969576
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521566 MT969622
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521570 MT969653
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521573 MT969656
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521575 MT969658
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521577 MT969660
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14244T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521578 MT969661
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T T22521Y G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521580 MT969663
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2745/2020
 ATTAAAGGTTTATAC1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_521581 MT969664
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521583 MT969666
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521585 MT969668
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2750/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28909T

EPI_ISL_521586 MT969669
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25699T A26162G GGG28881AAC C29836T

EPI_ISL_521588 MT969671
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2753/2020
 ATTAAAGGTTTATACCTTCCCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521591 MT969674
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7528T T7540C C12153T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521592 MT969675
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4832T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521593 MT969676
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21108T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521618 MT969632
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A11827G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521621 MT969635
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_521622 MT969636
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2788/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22523S G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521718 MT969623
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2887/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521721 MT969697
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C A27239T GGG28881AAC

EPI_ISL_521722 MT969698
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2891/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521725 MT969701
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2980T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521759 MT969736
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_521814 MT969805
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521846 MT972420
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_521847 MT972421
 2020-07-05 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522479
 2020-07-05 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2699/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T C29730T G29779T A29886G

EPI_ISL_522480
 2020-07-05 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C8123A C11916T C14408T C16650T C18647T A20675T A23403G G25563T G29179T G29737C CGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29743-

EPI_ISL_523047
 2020-07-05 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-19-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T5028A C17410T C21859T A22920T C26078T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523048
 2020-07-05 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-19-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A170G T514C ATG1605- T5028A C17410T C21859T A22920T C26078T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523049
 2020-07-05 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-19-15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T5028A C17410T C21859T A22920T C26078T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523050
 2020-07-05 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-19-19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C C706T ATG1605- T5028A C17410T C21859T A22920T C26078T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523051
 2020-07-05 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-19-9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T5028A C17410T C21859T A22920T C26078T G27390T A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523515
 2020-07-05 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8102T C11200T C14408T A23403G T24628C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_527033
 2020-07-05 2020-09-03
 Australia hCoV-19/Australia/NSW2513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1392T C3037T T5626C C13274T C14408T C18877T TAT22189- C22444T A23403G G25563T C26735T C28377T C28854T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527748
 2020-07-05 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- A35T C241T C1314T C3037T C10039T C14408T C15613T G16065A G22225T A23403G G26143A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_539804
 2020-07-05 2020-09-21
 China hCoV-19/Hong Kong/VM20030365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539894
 2020-07-05 2020-09-21
 United Kingdom hCoV-19/England/BRIS-1334E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- A1904G C8090T A10323G C10789T A10994R C14230T C16466T C17733T C22097A A23064M C28308Y C28887Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541885
 2020-07-05 2020-09-23
 Spain hCoV-19/Spain/MD-IBV-99007106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T T2943A C3037T C5700T A13951G C14408T G22801T A23403G C23481T GGG28881AAC C29098T TTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTA29728- CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_545796
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-8020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1545T C1884T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545820
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-8053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5140T C10030T C10319T C10834T C11514T C14408T C16694T A23403G T25057C G25563T C27657T C27964T C28087T C28892T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545843
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-8078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T G16014T C16260T A23403G G25563T G27670T C28821A G29701A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545963
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2086T C3037T C10319T G11113T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545964
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1473T C1549T C3037T C10319T C14408T A18424G C21304T A23403G G25009A G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545968
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A574G C1059T C3037T C11758T C14408T C16260T A23403G C23625T G25563T C27294T G27955A C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545977
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19677A A23403G C26735T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545981
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627T C2044T C3037T C3634A C3737T C14408T G16914A A23403G GGG28881AAC G28985A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545982
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14676T G16935T A23403G T24211C G25647T G25690T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545989
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T A23403G C24026T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545999
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A15257G G22346T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_546000
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1388G C2102T C3037T C6606T C6636T C10188T G12332T C14408T C21575T A23403G T24982C G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547409
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T T9742C C14408T C17639T C18511T A23403G A29089G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547410
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14362A C14408T T15276A A23403G G25563T C27213T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547411
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T C4084T T9742C C14408T C17639T C21767T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547413
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A T18291C A23403G C24378T G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547423
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547427
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C16260T C21638T A23403G T24212G G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547431
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C15714T C16192T C16260T C21707T A23403G C23557T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547432
 2020-07-05 2020-09-24
 United States hCoV-19/USA/TX-HMH-6382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3498T A12446G G13858T C14408T T14946C C15540T C18877T C19961T C21707T A23403G A24170G G25563T A25980G C29409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547668
 2020-07-05 2020-09-24
 United States hCoV-19/USA/WI-GMF-M00017/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1009T C1059T C3037T C14408T C15324T C16260T C21575T C21622T C22329Y A23403G G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_551811
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/ALDP-681B3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556093
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-631DBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13548T C13730T C14408T A15942G G23120T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556126
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-630E70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G C14408T G15243T G18782T C19488T C20544T G22225T T22906C A23403G T27501G GGG28881AAC G29736C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556148
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-63154D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T G7873K C11003T T13417C C14408T A23403G C25896T G25963A GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556172
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-62EADB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C2570T C3037T C14408T C14790T A23403G C25896T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556195
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-631F9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13548T C13730T C14408T A15942G G23120T A23403G G25429T C29679T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556217
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6D67DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556253
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-62FD59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T851Y C3037T C4084T G5716A C6568T C6628T C7528T C8139T C9298T A10286G C14408T T17313C C17502T C19524T C20320T A22116G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557742
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-6285D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7945T C9430T C14408T A23403G C25603Y C26022Y G26918T C28093T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557789
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-619095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19951T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557800
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-62AD4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T17835C C19951T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557812
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-6166F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T T22912G A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557821
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-628FB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C593T C3037T C14408T A23403G G24620T G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557823
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-62D632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557829
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-62BF1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557849
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-62CFB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C14708T C19488T A23403G T25851C C26527T C28391T GGG28881AAC C29659T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557854
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-62CDD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C14708T C19488T A23403G T25851C C26527T C28391T GGG28881AAC C29659T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557858
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-62DF46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2501G C3037T C6395T G10565C A12410G C14408T A18366G C18788T T19839C T21093C C22323T A23403G C23557T T25569C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557870
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-62BC41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3743T C13548T C13730T C14408T A15942G G23120T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557877
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-62C457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3743T C13548T C13730T C14408T A15942G G23120T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557879
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-628F78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A23403G G26918T A28081G C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557925
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-628312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C11003T T13417C C14408T A23403G C25896T G25963A GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557941
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-627CFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3904G C10833T C14408T C15324T C22458T A23403G G28747T G28917T G29543T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557947
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-62ACF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19951T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557953
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-62D81E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C19488T A23403G T25851C C26527T C28391T GGG28881AAC C29659T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557954
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-62CD98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C19488T A23403G T25851C C26527T C28391T GGG28881AAC C29659T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557959
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-61BEB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557964
 2020-07-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-628628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T G8371T G11083T C14408T C17746T G19962T G21770T C22477T A23403G G25563T T27802G C28292A G28881T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560982
 2020-07-05 2020-09-30
 Sweden hCoV-19/Sweden/20-52279/2020
 C241T C2143T T2200C C3037T C10340T C10833T C14408T T18132C A19899T G20102T A23403G C25117T GGG28881AAC

EPI_ISL_564274
 2020-07-05 2020-09-30
 Australia hCoV-19/Australia/VIC7193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_487362 MT755973
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_222/2020
 C241T C1593T C2940T C3037T C14408T C22444T A23403G C24181T G25494T G25563T GGG28881AAC T29661C AA29865-

EPI_ISL_487363
 2020-07-06 2020-07-14
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_223/2020
 C241T C3037T G11719A C14408T A23403G GTT26155- GGG28881AAC

EPI_ISL_487364
 2020-07-06 2020-07-14
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_224/2020
 C241T C3037T G11719A C14408T A23403G GTT26155- GGG28881AAC

EPI_ISL_487366 MT755900
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_226/2020
 C241T A1163T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_487367 MT755901
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_227/2020
 C241T A1163T C3037T C3784T C3961T C14408T C14571T G15594A A23403G G25972C C27577G GGG28881AAC C29769A

EPI_ISL_487368 MT755916
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_228/2020
 G160T C241T G2407A C2416T C3037T A5331G G8371T C14408T G17259T C21639T A23403G C23635T G25563T CCACGCGGAGTACGATCGAGTGT29738-

EPI_ISL_487371 MT755917
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_229/2020
 C241T A1163T C3037T C14408T C15738T C21707T A23403G GGG28881AAC T28888C T29753C

EPI_ISL_487372 MT755955
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_230/2020
 C241T C583T A1163T C3037T A11780G C14322T C14408T C16708T G21974C A23403G C26907T GGG28881AAC

EPI_ISL_487373 MT755956
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_231/2020
 C241T A1163T C3037T C14408T A23403G G25647A GGG28881AAC

EPI_ISL_487375 MT755857
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_232/2020
 C241T C1593T C2940T C3037T C14408T C18877T C22444T A23403G G25494T G25563T C26028T C26735T C28854T AA29865-

EPI_ISL_487376 MT755858
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_233/2020
 C241T C3037T G11719A C14408T A23403G GTT26155- GGG28881AAC

EPI_ISL_487378 MT755833
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_234/2020
 C241T A1163T C2485T C3037T C14408T A23403G C24023T GGG28881AAC

EPI_ISL_487380 MT755834
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_235/2020
 C241T A1163T C3037T A4503T C14408T A23403G G25456T GGG28881AAC

EPI_ISL_487382 MT755835
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_242/2020
 C241T A1163T C3037T C6285T G13201T C14408T G20274T A23403G GGG28881AAC

EPI_ISL_487383 MT755836
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_243/2020
 C241T A1163T C2910T C3037T C3961T G5950T C11036A C14408T A23403G C24181T GGG28881AAC T29661C

EPI_ISL_487384 MT755837
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_244/2020
 C241T G625T A1163T C1288T C3037T G11528A C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_487385 MT755838
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_245/2020
 C241T C421T A1163T C3037T T6262C T10285C A12083G C14408T T22711G A23403G G25954T GGG28881AAC

EPI_ISL_487386 MT755827
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_236/2020
 C241T A1163T C3037T T11377C G14202T C14408T A14990G C15237T C18508T T22304C G23342A A23403G A23586G GGG28881AAC

EPI_ISL_487392 MT755828
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_237/2020
 C241T A1163T C2040T C2910T C3037T C5869T C6310T C14408T G19723T A22330G A23403G C24919T C25504G GGG28881AAC

EPI_ISL_487393 MT755829
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_238/2020
 C241T A1163T C3037T C9866T C14408T G15372T C17883T A20415G C21575T C21855T A23403G G25647A GGG28881AAC

EPI_ISL_487394 MT755830
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_239/2020
 C241T A1163T T2211C A2870G C3037T A8026G C14408T A23403G G25445T GGG28881AAC

EPI_ISL_487395 MT755831
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_240/2020
 C241T C466T A1163T C3037T C10198T C14408T G15025T C19718T A23403G T23822C C24865T C26606T GGG28881AAC

EPI_ISL_487396 MT755832
 2020-07-06 2020-07-14
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_241/2020
 C241T A1163T C3037T C3961T G4300T C10834T G13920A C14408T G15982T G17280A A23403G GGG28881AAC

EPI_ISL_489945
 2020-07-06 2020-07-14
 United States hCoV-19/USA/WI-GMF-09471/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C715T C1059T G2036T C3037T C4686T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489946
 2020-07-06 2020-07-14
 United States hCoV-19/USA/WI-GMF-09489/2020
 ATTAAAGGTTTAT1- C241T G1135T C1376T C3037T C14408T A20268G G21989T A23403G C25831T C28854T G29081T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_489949
 2020-07-06 2020-07-14
 United States hCoV-19/USA/WI-GMF-09554/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T C14408T C15324T C16260T AA21550MW C21575T C21622T A23403G G25563T GC27882SY C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_493735
 2020-07-06 2020-07-21
 United Kingdom hCoV-19/England/SHEF-D285A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495464
 2020-07-06 2020-07-23
 United States hCoV-19/USA/WI-UW-759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G654A C3037T C12025T C14408T C18029T C18377T T19839C A23403G C23707T A26280G G28027A GGG28881AAC GTACGATCGAGT29747- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495471 MT795879
 2020-07-06 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G9479T C10188T C14408T C18877T A23403G T24982C G25563T C27964T C28093T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495473 MT795881
 2020-07-06 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495476 MT795884
 2020-07-06 2020-07-23
 United States SARS-CoV-2/human/USA/MO-UW-771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G198A C241T T833C C1059T A1445G C3037T C3218A C6723T C14408T A16541C T21458C A23403G T25550A G25563T C27964T C28748T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495488
 2020-07-06 2020-07-23
 United States hCoV-19/USA/WI-UW-784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CGGTTTCGTCCGT197- C241T C3037T C14408T A20268G G22014T A23403G C27577T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495490 MT795896
 2020-07-06 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C19264T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495502
 2020-07-06 2020-07-23
 United States hCoV-19/USA/WI-UW-798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CGGTTTCGTCCGT197- C241T T2845C C2939T C3037T C6500T C14408T A20268G G22014T A23403G C27577T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495507 MT795912
 2020-07-06 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6627T C11379T C12921T C14408T T15354C C18877T A21852C C22096T A23403G G25563T C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495557
 2020-07-06 2020-07-23
 South Africa hCoV-19/SouthAfrica/KRISP-0474/2020
 C241T C3037T G11447A C14408T C22675T A23403G A25505T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_497803
 2020-07-06 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C14408T C18877T C21304T C22444T A23403G C25046T G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498150
 2020-07-06 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T T28009C G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498151
 2020-07-06 2020-07-26
 Belgium hCoV-19/Belgium/ULG-10245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T T28009C G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498563
 2020-07-06 2020-07-27
 Italy hCoV-19/Italy/FVG-ICGEB_S218/2020
 C241T C3037T C4002T G5950T C7923T G10097A T11068C T11318C C13536T C14408T G19732T A23403G C23731T GGG28881AAC

EPI_ISL_498588
 2020-07-06 2020-07-27
 Singapore hCoV-19/Singapore/690/2020
 ATTAAAGGTT1- C4893T C6310A C6312A A10055G C11074T G11083T A11228G A12235C C13730T C19524T C23185T C23929T A24915T C28311T C29788A AAAAAAAAAAAA29892-

EPI_ISL_499783
 2020-07-06 2020-07-28
 United Kingdom hCoV-19/England/NORT-293853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C5548T A5876G G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499968
 2020-07-06 2020-07-28
 United Kingdom hCoV-19/England/CAMB-1B5467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1620G C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500557
 2020-07-06 2020-07-29
 Singapore hCoV-19/Singapore/737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C13730T G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500580
 2020-07-06 2020-07-29
 Ireland hCoV-19/Ireland/71IRL06434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7771C C14408T C19017T C21587A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500581
 2020-07-06 2020-07-29
 Ireland hCoV-19/Ireland/71IRL06455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1415T C3037T C14408T C18814T C18877T TAT22189- C22444T A23403G G25563T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500582
 2020-07-06 2020-07-29
 Ireland hCoV-19/Ireland/71IRL06472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1415T C3037T C8123A C14408T C18814T C18877T G20274T TAT22189- C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500878 LR862445
 2020-07-06 2020-07-30
 Switzerland 190012
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G1590R C3037T A3063R T6945W C11471T C12789Y C14408T C19524T G22205C A23403G C25731T GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500880 LR862451
 2020-07-06 2020-07-30
 Switzerland 190014
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- A68T C241T C2915M C2919M T2922K TC2924KM A2969R C3037T C3040Y A3558R G5138C T10076W G11083T C14408T A20742C A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500881 LR862457
 2020-07-06 2020-07-30
 Switzerland 190016
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5210A G6884R C6903Y A8399R G9130T C14408T A23403G G26257C T27319C G28487A C28868T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500882 LR862443
 2020-07-06 2020-07-30
 Switzerland 190017
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A30W C241T C3037T C3874T C6633T C8326Y C10833T G13459T C14408T C15324T C15600T T23062C A23403G G28747T G28917T G29543T G29745T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867W

EPI_ISL_500883 LR862456
 2020-07-06 2020-07-30
 Switzerland 190018
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C5787T G6532K A6875W C6936S A6999R G10265A C14408T C15720T A15972G C17285T C19718T A23403G G26700T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500885 LR862444
 2020-07-06 2020-07-30
 Switzerland 190020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T T856C G1590R C3037T A8825R C10252Y C11471T C12789Y C14408T C19524T G22205C A23403G C25731T C27707Y GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500891 LR862441
 2020-07-06 2020-07-30
 Switzerland 190027
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G247R A314W T426W C635Y A642M C1205M A2271R C3037T T3144W G3671R G3720K T3726Y A3742M C5183Y A5436R G5470K A5511R C5534Y C6312Y C8964Y G9111S C9864Y G10901R G11842A A12759G C14408T C14576Y G14969S T15597Y C16648Y C17548S A17807W C17966Y G18292T A20268G G21468K A21626R T21649Y C21736Y G22073R G22632R A23403G C23638Y C24826Y C24863Y C24904Y C25521Y C26042M C28253Y G28620K C28854T C29743Y C29754Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500892 LR862446
 2020-07-06 2020-07-30
 Switzerland 190029
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T2934Y C3037T G10265A C14408T C15720T A15972G C19718T C22202M A23403G G26700T T28759C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500893 LR862442
 2020-07-06 2020-07-30
 Switzerland 190030
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C100T C241T C3037T C4002T G5950K G10097R C13536T C14408T G19732T A23403G C23731T C24082Y GGG28881AAC C29754T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500936 LR862499
 2020-07-06 2020-07-30
 Switzerland 190079
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7000Y T7020K G11842A A12759G C14408T C14931A C15540T C17304Y G18292T A20268G G22205T A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500937 LR862496
 2020-07-06 2020-07-30
 Switzerland 190081
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G7027R T7035W G11842A A12759G C14408T C14931A C15540T C16523Y G18292T A20268G T21075W G22205T A23403G G23948R C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500938 LR862501
 2020-07-06 2020-07-30
 Switzerland 190082
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G6566T G10265A C14408T A15972G C17678Y A17864G C19718T A23403G C23707T A25439M T28759C GGG28881AAC G29422T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501808
 2020-07-06 2020-07-31
 Latvia hCoV-19/Latvia/074/2020
 C241T A1202G C3037T C12513T C14408T C15763T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_507445
 2020-07-06 2020-08-03
 United States hCoV-19/USA/MI-MDHHS-SC21188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C335T C346T C1059T C3037T T5290C C14408T T16425G C17639T C21575T A23403G G25489T G25563T C26455T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_507961
 2020-07-06 2020-08-03
 United States hCoV-19/USA/MN-MDH-1373/2020
 ATTA1- C241T C1059T C3037T C3773T T14191C C14408T C16260T A23403G A24253T G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_507969
 2020-07-06 2020-08-03
 United States hCoV-19/USA/MN-MDH-1381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C3695T C5413T C6501T T9041G G14008A C14408T C17676T C22227T G22249T A23403G G25563T G28899T C29545T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_508762 MT834699
 2020-07-06 2020-08-04
 United States SARS-CoV-2/human/USA/FL-BPHL-0559/2020
 ATT1- C241T C1059T C1191T C3037T A6035G T6435C C10319T C11650T C14408T G17014T A23403G G25563T C27964T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_509662 MT843737
 2020-07-06 2020-08-05
 United States SARS-CoV-2/human/USA/GA-CDC-0851/2020
 G208T C241T T2845C C3037T C14408T C20178T A20268G A23403G C25916T G26589T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509868 MT846554
 2020-07-06 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T G4962A C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509874 MT846560
 2020-07-06 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4226T A7837C C14408T G15646A C18377T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509964 MT846652
 2020-07-06 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509967 MT846655
 2020-07-06 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2003T C3037T C5310T C12294T C14408T T22825C A23403G C25511T G25563T CGGAGT29743- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509970 MT846658
 2020-07-06 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512072 MT940474
 2020-07-06 2020-08-10
 India SARS-CoV-2/human/IND/GBRC335a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T A5353G C14408T C18877T A21137G C22444T A23403G G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_512073 MT940475
 2020-07-06 2020-08-10
 India SARS-CoV-2/human/IND/GBRC335b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T A5353G C14408T C18877T A21137G C22444T A23403G T25514A G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_512074 MT940476
 2020-07-06 2020-08-10
 India SARS-CoV-2/human/IND/GBRC336/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A742G C2836T C3037T C3040T C10641T A11887C C12459T C14408T G16078A C18877T G22021T C22444T A23403G T24892C C25511T G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514213 MT890346
 2020-07-06 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3717T C10319T C14408T G16710T G20176T A23403G A25121T G25563T C27964T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_514214 MT890347
 2020-07-06 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0868/2020
 A1- C241T C1059T C3037T C10319T C12890T C14120T C14408T G19962T A23403G G25563T C27964T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_514215 MT890348
 2020-07-06 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18647T C19884T A23403G C25916T T26621C T27299C GGG28881AAC T29148C C29769T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_514450
 2020-07-06 2020-08-17
 United Kingdom hCoV-19/England/CAMB-1B5AB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1620G T2343C C3037T C4002T A6604G G10097A C13536T G13936T C14408T A20150G G22335C A23403G C23731T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514636 MT892983
 2020-07-06 2020-08-17
 United States SARS-CoV-2/human/USA/MN-MDH-1417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G16622A C19097T A23403G G24399T G25563T C27964T T29308C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515033
 2020-07-06 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2631/2020
 ATTAAAGGTT1- C241T C1059T C3037T G8179A C11916T C14408T C16650T C18928T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_515035
 2020-07-06 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2633/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_515036
 2020-07-06 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_516818
 2020-07-06 2020-08-24
 Singapore hCoV-19/Singapore/818/2020
 ATTA1- A3951G C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T AAAAAAAAAAAA29892-

EPI_ISL_516821
 2020-07-06 2020-08-24
 Singapore hCoV-19/Singapore/821/2020
 ATTAAAGGT1- C6310A C6312A G11083T C13730T C19170T A19494G C19524T C23929T C24130T C28311T A28855T C29421Y AAAAAAAAAAAA29892-

EPI_ISL_518044
 2020-07-06 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T A3989G G11447A C14408T C22675T A23403G A25505T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518045
 2020-07-06 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C6701T C11916T C14408T C16376T A23403G A28752G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_518472 MT971408
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518482 MT971418
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26078T G26840T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518485 MT971421
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_519821 MT971046
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5017/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19263T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520165 MT971386
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520170 MT971391
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_520173 MT971396
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520177 MT971403
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G23755T GGG28881AAC

EPI_ISL_520263 MT972638
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520267 MT972642
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520294 MT972669
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3656T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520297 MT972672
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C3656T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29200T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520311 MT972686
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520569 MT970177
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520572 MT970180
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19102T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520760 MT972449
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2948G C3037T T7540C C14408T G16647T C18555T A21245G G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520808 MT972536
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3101/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24023T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520815 MT972543
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3108/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520816 MT972544
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3109/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520818 MT972546
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C8247T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520820 MT972549
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C8106T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520822 MT972551
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520823 MT972552
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520825 MT972554
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3118/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520826 MT972555
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A28792T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520827 MT972556
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3120/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520828 MT972557
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23895T C28377T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_520829 MT972558
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3122/2020
 ATTAAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520830 MT972559
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520831 MT972560
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17550T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_520832 MT972561
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G21809T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520833 MT972562
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520834 MT972563
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520835 MT972564
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520842 MT972516
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_520864 MT972452
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G343A A1163T C3037T T7540C A11600G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520926 MT972513
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520927 MT972514
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520928 MT972515
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3248/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520955 MT969886
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_520959 MT969894
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3280/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_520976 MT969948
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520981 MT969982
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521011 MT969895
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521014 MT969899
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521041 MT969939
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_521043 MT969942
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_521044 MT969943
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3365/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521047 MT969947
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3368/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521048 MT969949
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C25433T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521051 MT969952
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3372/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521055 MT969956
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521057 MT969958
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521062 MT969964
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_521065 MT969970
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3386/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_521068 MT969973
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521077 MT969983
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521102 MT972571
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T712A A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_521105 MT972574
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4560T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521107 MT972576
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_521108 MT972577
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3442/2020
 ATTAAAGGTTTATACCTT1- C241T A1163T C3037T C7113T T7540C A11117G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521112 MT972582
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521117 MT972587
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_521121 MT972592
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521123 MT972594
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521125 MT972596
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_521128 MT972599
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3259T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521131 MT972602
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521562 MT969575
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521568 MT969651
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25771T GGG28881AAC

EPI_ISL_521569 MT969652
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13011T C14408T G16647T C18555T A20437G G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521571 MT969654
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521572 MT969655
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A489G A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_521574 MT969657
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521582 MT969665
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521589 MT969672
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2754/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521590 MT969673
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521605 MT969380
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_521606 MT969381
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521612 MT969626
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A12792G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521613 MT969627
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521615 MT969629
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2781/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521616 MT969630
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521624 MT969638
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521630 MT969379
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T G11029T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_521709 MT969613
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7600T G7798T G11029T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_521710 MT969614
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T G11029T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_521712 MT969616
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T G11029T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_521739 MT970471
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521740 MT970472
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2909/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521752 MT969729
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C25433T GGG28881AAC

EPI_ISL_521753 MT969730
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G216T C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521754 MT969731
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521755 MT969732
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C25433T GGG28881AAC

EPI_ISL_521756 MT969733
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521757 MT969734
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G4904T A5353G T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G A28624G GGG28881AAC

EPI_ISL_521760 MT969737
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2929/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521761 MT969738
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T G17721T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521763 MT969740
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521764 MT969741
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521781 MT969776
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521784 MT969779
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2954/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521787 MT969782
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521795 MT969788
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521800 MT969792
 2020-07-06 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C10789T C14408T G16647T C18555T C18828T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522483
 2020-07-06 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C9430T C14408T A19702G T22020C A23403G T29479C G29868A

EPI_ISL_522484
 2020-07-06 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2704/2020
 ATTAAAGGTTTA1- C21T C241T C3037T C5869T C10377T C14408T C18928T A23403G GGG28881AAC

EPI_ISL_522485
 2020-07-06 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2705/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_523347
 2020-07-06 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523372
 2020-07-06 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523514
 2020-07-06 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G434A C3037T C3241T C9611T A11386G C14408T T17323C A23403G C27998T GGG28881AAC AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_523670
 2020-07-06 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523671
 2020-07-06 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524446
 2020-07-06 2020-08-28
 Singapore hCoV-19/Singapore/739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T4996C C6310A C6312A G9500A G11083T T12775G C13730T T16542C G17427T C18894T C19524T C23929T T26957C C28311T G29616T CCACGCGGAGTACGATCGAGTGT29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524447
 2020-07-06 2020-08-28
 Singapore hCoV-19/Singapore/740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3951G C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524448
 2020-07-06 2020-08-28
 Singapore hCoV-19/Singapore/741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3951G C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524733
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-376a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C4832T G8371T C12885T C14408T G16912T A23403G C23673T A25405G C27213T GGG28881AAC C29545T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524734
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-376b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C4832T G8371T C12885T C14408T G16912T C21557T A23403G C23673T A25405G C27213T GGG28881AAC C29545T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524752
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-389a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T G1261T C3037T C3923T C14408T C18877T A23403G G24197T G25440T G25563T C26735T C28760A GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524753
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-389b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T G1261T C3037T C3923T T11515A C14408T C18877T A23403G G24197T G25440T G25563T C26735T C28744T C28760A GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524754
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-390a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T T7120C C14408T G15372T C18877T C21642T C22444T A23403G C23673T G25563T C26735T G26842A C28854T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_524755
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-390b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T T11495C C12885T C14408T C18747T A23403G C23997T A25405G C27213T C28854T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_524756
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-391a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T A5462G C9487T C14408T C18877T G20881A C22444T C22987T A23403G G25563T C26735T G27882A C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524757
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-391b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T A5462G C9487T C14408T C18877T G20881A C22444T C22987T A23403G G25563T C26735T G27882A C28801T C28854T A29499T C29721T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524758
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-392a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T T4660C C4890T T8634C C14408T G15906T C18877T A23403G G25563T C26735T G28307A G28851T G28975T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524759
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-392b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C4048T T4660C C4890T T8634C C14408T G15906T C18877T A23403G G25563T C26735T G28307A G28851T G28975T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524760
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-393a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- G219T C241T C3037T G4866T C14408T C14425A A23403G G27364T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524761
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-393b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C121T G219T C241T C3037T G4866T C14408T C14425A A23403G G27364T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524762
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-394a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T T606C C3037T C14408T C18877T C21575T A23403G G25563T C26735T C28720T A28989G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524763
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-394b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T T606C C3037T C14408T C18877T A23403G G25563T C26735T C28720T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524764
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-395a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C313T G1681T C3037T C5700A C14408T C15540T G20275T A20364G A23403G A28119G GGG28881AAC C29666T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524765
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-395b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C313T G1681T C3037T C5700A C14408T C15540T G20275T A20364G A23403G A28119G C28748T GGG28881AAC C29666T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524766
 2020-07-06 2020-08-28
 India hCoV-19/India/GJ-GBRC-396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C6402T C14408T C18877T C22444T A23403G G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_525940
 2020-07-06 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0979/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_525942
 2020-07-06 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T C15024T C16260T G18079A C20429A G22225T A23403G G25563T C28821A

EPI_ISL_526225
 2020-07-06 2020-09-01
 Hungary hCoV-19/Hungary/MH-13211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5826T C7267T C8982T G12111A G12514A C14408T G15372T A20268G A23403G C27131T G27670T C28854T C29311T G29543T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526845
 2020-07-06 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0722/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T G4201T G5539A C8664A G8851A C14408T T22573C A23403G A25505C C26895T G28747T GGG28881AAC G29474T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_526846
 2020-07-06 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0723/2020
 ATTAAAGGTTTA1- C241T C3037T G4201T G5539A C8664A G8851A C14408T T22573C A23403G A25505C C26895T G28747T GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_527576 MT958208
 2020-07-06 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527577 MT958209
 2020-07-06 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1512/2020
 AT1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_527578 MT958210
 2020-07-06 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T C19029T A20268G T21808A A23403G G28373T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_527579 MT958211
 2020-07-06 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1514/2020
 A1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_527580 MT958212
 2020-07-06 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C11575T C14408T C19029T A20268G T21808A T22483C A23403G G28373T C28854T G29747A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527581 MT958213
 2020-07-06 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_527582 MT958214
 2020-07-06 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1517/2020
 ATTAAAGGTTTATACC1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_527583 MT958215
 2020-07-06 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1518/2020
 AT1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G A24400G G28373T C28854T G29747A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_527751
 2020-07-06 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T42A C241T C1059T C3037T A6907C C14408T C17288T A23403G G24368T G25563T A29567G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_528531
 2020-07-06 2020-09-07
 United States hCoV-19/USA/AK-PHL868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534236
 2020-07-06 2020-09-11
 Sweden hCoV-19/Sweden/20-52289/2020/P1
 C241T C335T C1059T C3037T C14408T A18801G A23403G G25563T A25864G G25922T C26010T G26268T T28082C C28887T

EPI_ISL_534241
 2020-07-06 2020-09-11
 Sweden hCoV-19/Sweden/20-52386/2020/P1
 C241T C3037T C9120T C14408T C18032T A23403G G24926T A26519T GGG28881AAC A29350G

EPI_ISL_534242
 2020-07-06 2020-09-11
 Sweden hCoV-19/Sweden/20-52387/2020/P1
 C241T A1002C T1623C C3037T C13665T C14408T G22468T A23403G GGG28881AAC G28908T G29162T

EPI_ISL_534243
 2020-07-06 2020-09-11
 Sweden hCoV-19/Sweden/20-52388/2020/P1
 C241T C3037T C4276T G11266T C14408T G20126A A23403G GGG28881AAC

EPI_ISL_539495 MW018448
 2020-07-06 2020-09-18
 United States SARS-CoV-2/human/PRI/PR-CDC-S29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T T1936C C3037T G3433A G6297A C13487T C14408T C16260T C17326T C21707T A23403G C23557T G25563T G26690T T27511C C27679T C28821A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_539805
 2020-07-06 2020-09-21
 China hCoV-19/Hong Kong/VM20030491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C19602T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539807
 2020-07-06 2020-09-21
 China hCoV-19/Hong Kong/VM20030723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C854T C1926Y C3037T C8626Y G11083T C13051T C14408T C21597T A23403G A27224C GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539808
 2020-07-06 2020-09-21
 China hCoV-19/Hong Kong/VM20031162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5924A G6943T C14408T T21775G A23403G G28077C GGG28881AAC C29784T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541664
 2020-07-06 2020-09-21
 United States hCoV-19/USA/SC-DHEC-1079/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T A16839G C18998T A23403G G25563T G29540A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_541665
 2020-07-06 2020-09-21
 United States hCoV-19/USA/SC-DHEC-1081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G246A C1059T C3037T C7834T T11176C C11916T C14408T A16839G C18109A C18998T A23403G G25563T G29540A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_541751
 2020-07-06 2020-09-23
 India hCoV-19/India/MH-NIV-99913/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C11109T C14408T G18546T C21627T A23403G G26803T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_545719
 2020-07-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-7935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C14676T G20932A A23403G G25647T T27722C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545784
 2020-07-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-8006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1684T C3037T C9967T G10902A T10906C C14408T C18687T A23403G C23683T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545785
 2020-07-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-8007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3514T G4162T C9163A C9430T C10188T C14408T C16694T A23403G T24982C G25563T G27390C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545794
 2020-07-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-8017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T365C C1059T C3037T C12781T C14408T C14786T G16558A G19525T C23191T A23403G G25563T C28737T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545823
 2020-07-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-8056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16260T G19872T T20331C C21707T A23403G C23557T A24287G G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545965
 2020-07-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-6392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1333C G2086T C3037T C10319T G11113T C14408T A18424G C21302T CG21304AA A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545998
 2020-07-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-6441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4162T C9163A C9430T C10188T C12534T C14408T C16694T A21466G C21998T C23206T A23403G T24982C G25302T G25563T G27390C C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547213
 2020-07-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-6072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A15436G A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547237
 2020-07-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-6100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4105T C10188T A11782G C14408T A23403G T24982C G25563T C27964T T28208C G29140A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547388
 2020-07-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-6319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1919T C3037T A3278G C6312T C10507T C14408T C16260T A23403G G25563T C26894T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547426
 2020-07-06 2020-09-24
 United States hCoV-19/USA/TX-HMH-6372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T C1059T C3037T C8208T G12322T C14408T G16827A C18714T C20823T G21305A A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547577
 2020-07-06 2020-09-24
 Brazil hCoV-19/Brazil/SP-405/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12400T C14408T C17304T G19398T T22070C A23403G GGG28881AAC T29148C C29363T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_547669
 2020-07-06 2020-09-24
 United States hCoV-19/USA/WI-GMF-M00018/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C715T C1059T G2036T C3037T C10263T C11916T C14408T G23311T A23403G A23586G G25563T G27478T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549174
 2020-07-06 2020-09-28
 Norway hCoV-19/Norway/3173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6402T C14408T A16734G A20268G T22207C A23403G G24794T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557753
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-61E045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C19488T A23403G T25851C C26527T C28391T GGG28881AAC C29659T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557766
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-61E6CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C19488T A23403G T25851C C26527T C28391T GGG28881AAC C29659T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557796
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-610878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3966Y C6500A A13953G C14408T C21242T A23403G G26450T GGG28881AAC C28890T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_557827
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-6145D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10369T C10560T C14408T G18674A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557830
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-615FF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2015G C3037T A6360G C9541T G11083T C14408T A23403G C24502A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557845
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-6239BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T G8371T G11083T C14408T C17746T G19962T G21770T C22477T A23403G G25563T T27802G C28292A G28881T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557853
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-620866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4456T C14408T C16394T C19170T G19509A A21509G A23403G G25906T GGG28881AAC T29568C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557876
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-61B2F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4456T C14408T C16394T C19170T G19509A A21509G A23403G G25906T GGG28881AAC T29568C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557894
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-622381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557895
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-622B4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3743T C13548T C13730T C14408T A15942G G23120T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557907
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-617DDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2676T C3037T C4582T G8540A C12919T C13862T C14408T C19895Y A23403G TTCAAGAACTTTACTCTCCAATTT27671- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557911
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-61DA0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T AG3327GT A3569G C3695T A6211G A8659G C14408T C19488T A23403G G23868T C25867T C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557926
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-60EB38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G343T C3037T A8884G C14408T G21220T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557938
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-62104F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3634T C6828T T6913C C8917T C11511T C14408T C15324T C19983T A23403G C27603T G28899A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557949
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-623809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15438T A23403G T25202K C25207T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557965
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-620D49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C2113T C3037T C3714T A5317G C14408T A16474G G20996T A23403G G25912T GGG28881AAC C29045T C29269A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557974
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-61C6BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C4456T C5621T G9479T C14408T A20288C A23403G C25624T G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557984
 2020-07-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-622EBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565376
 2020-07-06 2020-09-30
 Australia hCoV-19/Australia/VIC9055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C6033T T7540C C14408T G15908K G16647T C18555T C18568T C19011Y G22992A G23401A A23403G C23457A GGG28881AAC C29733Y CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565843
 2020-07-06 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1191T C3037T C5310T C12294T C14408T A19883G A23403G C25511T G25563T G28580T A29558G AAAAAA29898-

EPI_ISL_565846
 2020-07-06 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1191T C3037T C5310T C12294T C14408T A19883G A23403G C25511T G25563T G28580T A29558G GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

MT919775
 2020-07-06 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-4149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7086T C9474T G11083T C13051T C14408T C21597T A23403G GGG28881AAC C29144T

MT919776
 2020-07-06 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-4281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G942A C3037T G3641A C12053T C14408T C20133T A23403G G25088T G27816A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MT919777
 2020-07-06 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-4282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2973T C3037T C3411T C10138T C14408T C20312T C21597T A23403G C28308G GGG28881AAC CTCCTGCTAGAATGGCTGGCA28890- C29144T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

MT953887
 2020-07-06 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-376a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C4832T G8371T C12885T C14408T G16912T A23403G C23673T A25405G C27213T GGG28881AAC C29545T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT953890
 2020-07-06 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-376b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C4832T G8371T C12885T C14408T G16912T C21557T A23403G C23673T A25405G C27213T GGG28881AAC C29545T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT954067
 2020-07-06 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-389a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T G1261T C3037T C3923T C14408T C18877T A23403G G24197T G25440T G25563T C26735T C28760A GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT954069
 2020-07-06 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-389b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T G1261T C3037T C3923T T11515A C14408T C18877T A23403G G24197T G25440T G25563T C26735T C28744T C28760A GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT954071
 2020-07-06 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-390a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T T7120C C14408T G15372T C18877T C21642T C22444T A23403G C23673T G25563T C26735T G26842A C28854T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

MT954072
 2020-07-06 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-390b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T T11495C C12885T C14408T C18747T A23403G C23997T A25405G C27213T C28854T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

MT954103
 2020-07-06 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-391a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T A5462G C9487T C14408T C18877T G20881A C22444T C22987T A23403G G25563T C26735T G27882A C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT954414
 2020-07-06 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-391b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T A5462G C9487T C14408T C18877T G20881A C22444T C22987T A23403G G25563T C26735T G27882A C28801T C28854T A29499T C29721T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT954416
 2020-07-06 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-392a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T T4660C C4890T T8634C C14408T G15906T C18877T A23403G G25563T C26735T G28307A G28851T G28975T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT954593
 2020-07-06 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-392b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C4048T T4660C C4890T T8634C C14408T G15906T C18877T A23403G G25563T C26735T G28307A G28851T G28975T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT954959
 2020-07-06 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-394a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T T606C C3037T C14408T C18877T C21575T A23403G G25563T C26735T C28720T A28989G GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT954971
 2020-07-06 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-394b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T T606C C3037T C14408T C18877T A23403G G25563T C26735T C28720T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT955114
 2020-07-06 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-395a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C313T G1681T C3037T C5700A C14408T C15540T G20275T A20364G A23403G A28119G GGG28881AAC C29666T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT955326
 2020-07-06 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-395b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C313T G1681T C3037T C5700A C14408T C15540T G20275T A20364G A23403G A28119G C28748T GGG28881AAC C29666T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT955347
 2020-07-06 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C6402T C14408T C18877T C22444T A23403G G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT971405
 2020-07-06 2020-08-27
 Australia SARS-CoV-2/human/AUS/VIC5416/2020
 ATTA1- C241T A1163T C3037T T6199C C7528T T7540C C12513T C14408T G16647T C18555T C22480T G22992A G23401A A23403G T25704C CTC25708- A25712C T25716A GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

MW009055
 2020-07-06 2020-09-16
 United States SARS-CoV-2/human/USA/UF-26/2020
 ATTAAAGGTTTATAC1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C15656T A23403G C23692T G25563T G25996T C28087T AAAAAAAAAAAAAAAAAAAAAA29882-

MW012268
 2020-07-06 2020-09-17
 Serbia SARS-CoV-2/human/SRB/KM37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW012273
 2020-07-06 2020-09-17
 Serbia SARS-CoV-2/human/SRB/KV14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T G6566T G10265A C14408T A15972G C17678T A17864G C19718T G20493A A21489C G21809T A23403G C23707T T28759C GGG28881AAC G29422T G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW012274
 2020-07-06 2020-09-17
 Serbia SARS-CoV-2/human/SRB/KM56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T G10265A C14408T C15720T A15972G C19718T C21707T A23403G G26700T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW012275
 2020-07-06 2020-09-17
 Serbia SARS-CoV-2/human/SRB/KM05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T G3259T G10265A C14408T C15720T A15972G A17063G C19718T C21691T A23403G G26700T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW021455
 2020-07-06 2020-09-21
 United States SARS-CoV-2/human/USA/COVID20-1079/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T A16839G C18998T A23403G G25563T G29540A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MW021456
 2020-07-06 2020-09-21
 United States SARS-CoV-2/human/USA/COVID20-1081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G246A C1059T C3037T C7834T T11176C C11916T C14408T A16839G C18109A C18998T A23403G G25563T G29540A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_489951
 2020-07-07 2020-07-14
 United States hCoV-19/USA/WI-GMF-09664/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C715T C1059T G2036T C3037T C4686T A9424G C11916T C14408T G23311T A23403G A23586G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_489952
 2020-07-07 2020-07-14
 United States hCoV-19/USA/WI-GMF-09680/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489953
 2020-07-07 2020-07-14
 United States hCoV-19/USA/WI-GMF-09683/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C14408T C18486T G18651A A19310G A20268G T22162C A23403G T24565C C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489954
 2020-07-07 2020-07-14
 United States hCoV-19/USA/WI-GMF-09715/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C14408T C15324T C16260T C21575T C21622T C22329Y A23403G G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_489955
 2020-07-07 2020-07-14
 United States hCoV-19/USA/WI-GMF-09752/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G1312T C3037T C6627T C8016T C13115T C14408T A23403G T25929G C27972T G28300T G28883A A28998G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_490109
 2020-07-07 2020-07-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_246/2020
 C241T C683T A1163T C3037T A8026G C14408T A23403G GGG28881AAC

EPI_ISL_490110
 2020-07-07 2020-07-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_247/2020
 C241T A1163T C3037T C6445T C14408T A23403G GGG28881AAC

EPI_ISL_490111
 2020-07-07 2020-07-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_248/2020
 C241T A1163T C3037T C14408T G16852T A23403G G25647A GGG28881AAC

EPI_ISL_490113 MT876433
 2020-07-07 2020-07-15
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_249/2020
 C241T C683T A1163T C3037T A8026G C14408T A23403G GGG28881AAC

EPI_ISL_490114 MT876546
 2020-07-07 2020-07-15
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_250/2020
 C241T A1163T C3037T C14408T C15738T C21707T A23403G GGG28881AAC T28888C T29753C

EPI_ISL_490144 MT876525
 2020-07-07 2020-07-15
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_251/2020
 C241T A1163T C3037T C3961T G4300T C10834T G13920A C14408T G15982T A23403G GGG28881AAC

EPI_ISL_490164 MT876555
 2020-07-07 2020-07-15
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_253/2020
 C241T A1163T C2910T C3037T C3961T G5950T C11036A C14408T C21855T A23403G C24181T GGG28881AAC T29661C

EPI_ISL_490165
 2020-07-07 2020-07-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_256/2020
 C241T A1163T C3037T C14408T C15738T C21707T A23403G GGG28881AAC T28888C T29753C

EPI_ISL_490166 EPI_ISL_512774 MT762396
 2020-07-07 2020-07-15
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_254/2020
 C241T A1163T C2040T C2910T C3037T C5869T C6310T C14408T C19488T G19723T A22330G A23403G C24919T C25504G GGG28881AAC

EPI_ISL_490166 EPI_ISL_512774 MT762396
 2020-07-07 2020-07-15
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_254/2020
 C241T A1163T C2040T C2910T C3037T C5869T C6310T C14408T C19488T G19723T A22330G A23403G C24919T C25504G GGG28881AAC

EPI_ISL_490167
 2020-07-07 2020-07-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_255/2020
 C241T A1163T C3037T C3961T G4300T A6108G G12817T G13920A C14408T G15982T A19368C G19723T A23403G G25526T C25583T GGG28881AAC C29095T

EPI_ISL_490168
 2020-07-07 2020-07-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_257/2020
 C241T C1593T C2940T C3037T T12181C C14408T C18877T C20320T A21174G C22444T A23403G C24223T G25494T G25563T G25699T C26735T T26948C C28854T

EPI_ISL_492992
 2020-07-07 2020-07-20
 Latvia hCoV-19/Latvia/057/2020
 C241T A1202G C3037T C12513T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_492995
 2020-07-07 2020-07-20
 Latvia hCoV-19/Latvia/060/2020
 C241T C3037T G13201A C14408T T15096C C21642T A23403G C24130T GGG28881AAC

EPI_ISL_492996
 2020-07-07 2020-07-20
 Latvia hCoV-19/Latvia/061/2020
 C241T C3037T C3373A T10150C C12488T C14408T G18397T G21724A A23403G A25501G G28373T GGG28881AAC

EPI_ISL_492997
 2020-07-07 2020-07-20
 Latvia hCoV-19/Latvia/062/2020
 C241T A1202G C3037T C12513T C14408T G15672T C18877T A23403G C23430T G25563T

EPI_ISL_495460 MT795870
 2020-07-07 2020-07-23
 United States SARS-CoV-2/human/USA/NJ-UW-755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495463 MT795873
 2020-07-07 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G216A C241T C775T C832T C1059T C3037T C6406T C9967T G13459T C14408T C17104T C18877T T19506C CG21304AA A23403G G25297T G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495465 MT795874
 2020-07-07 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495475 MT795883
 2020-07-07 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C25276T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_495489 MT795895
 2020-07-07 2020-07-23
 United States SARS-CoV-2/human/USA/WI-UW-785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497782
 2020-07-07 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1572T C3037T C5184T T5941C C14408T C18877T A23403G A23623G G25563T C26735T A29359T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497841
 2020-07-07 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T A12075G C14408T C18877T C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497854
 2020-07-07 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497855
 2020-07-07 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1613T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498062
 2020-07-07 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0491/2020
 ATTAAAGGTTTAT1- C241T C3037T A7064G C14408T C15185T C19151T C22675T A23403G T27384C G28166A C28639T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498081
 2020-07-07 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0539/2020
 AT1- C241T C3037T T9208A T12503C C14408T C16490T A23403G G25770T T27384C GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_498114
 2020-07-07 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C6762T T12503C C14408T A23403G G25770T GGG28881AAC C29721T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_498118
 2020-07-07 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6762T G7675A T12503C C14408T A23403G G25770T GGG28881AAC C29721T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_498122
 2020-07-07 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G174T C241T C3037T C9857T C14408T A23403G T26306C A26530G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_498253 MT876547
 2020-07-07 2020-07-27
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_258/2020
 T205C C241T A1163T C1734T G1820A C3037T C6807T A12936C C14408T A23403G GGG28881AAC C29741T

EPI_ISL_498254 MT876548
 2020-07-07 2020-07-27
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_260/2020
 C241T A1163T C3037T C14408T G20679T A23403G T25713C GGG28881AAC

EPI_ISL_498267 MT876526
 2020-07-07 2020-07-27
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_263/2020
 C241T C1457T C3037T G11719A C14408T A23403G GGG28881AAC

EPI_ISL_498562
 2020-07-07 2020-07-27
 Italy hCoV-19/Italy/FVG-ICGEB_S217/2020
 C241T G370T C1912T C3037T C9286T C10252T C11511G T13438C C14178T C14408T C19763T A23403G GGG28881AAC

EPI_ISL_498590
 2020-07-07 2020-07-27
 Singapore hCoV-19/Singapore/692/2020
 ATTAAAGG1- C2245T C6310A C6312A T8731C G11083T C13730T G14428T C19524T C20468T C23929T C25511T C28311T AAAAAAAAAAAA29892-

EPI_ISL_498808 MT847217
 2020-07-07 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_259/2020
 T205C C241T A1163T C3037T G3246T A10323G C14408T C16017T C16887T C21998T A23403G G27390T GGG28881AAC

EPI_ISL_499971
 2020-07-07 2020-07-28
 United Kingdom hCoV-19/England/CAMB-1B5616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1620G C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499973
 2020-07-07 2020-07-28
 United Kingdom hCoV-19/England/CAMB-1B5670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3994A G8612T C14408T A23403G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500583
 2020-07-07 2020-07-29
 Ireland hCoV-19/Ireland/71IRL07034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T C18877T C22444T A23403G G25563T C26735T C28854T G29239A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500584
 2020-07-07 2020-07-29
 Ireland hCoV-19/Ireland/71IRL07120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T C18877T C22444T A23403G G25563T C26735T C28854T G29239A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500585
 2020-07-07 2020-07-29
 Ireland hCoV-19/Ireland/71IRL07157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T C18877T C22444T A23403G G25563T C28854T G29239A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500587
 2020-07-07 2020-07-29
 Ireland hCoV-19/Ireland/71IRL07177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T C18877T C22444T A23403G G25563T C26735T C28854T G29239A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500588
 2020-07-07 2020-07-29
 Ireland hCoV-19/Ireland/71IRL07206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T C18877T C22444T A23403G G25563T C26735T C28854T G29239A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500589
 2020-07-07 2020-07-29
 Ireland hCoV-19/Ireland/71IRL07248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T C18877T A23403G G25563T C26735T C28854T G29239A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500591
 2020-07-07 2020-07-29
 Ireland hCoV-19/Ireland/71IRL07442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T C18877T C22444T A23403G G25563T C26735T C28854T G29239A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500886 LR862440
 2020-07-07 2020-07-30
 Switzerland 190021
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T T2911Y T3011K C3037T G3074K A3116W T3144K T6882Y C7600T C9286T G10759K C14408T A15379G C19763T G20635S G21123T A23403G C25037T T25652Y G28321T GGG28881AAC G29557T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500887 LR862439
 2020-07-07 2020-07-30
 Switzerland 190022
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T844C C1101T C3037T G3259T C4158Y G7027K T7035W G10265A C14408T C15720T A15972G G18651K C19718T A22920T A23403G C24381Y G26700T T28759C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500889 LR862452
 2020-07-07 2020-07-30
 Switzerland 190025
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T2537G G3002K C3037T C6573T A6707G T6904K A6939M G12191T C14408T T16479C A23403G C25587T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500890 LR862448
 2020-07-07 2020-07-30
 Switzerland 190026
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T844C C1101T C3037T G3259T T6904Y T7035W G10265A C14408T C15720T A15972G C19718T A22920T A23403G G26700T T28759C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500894 LR862449
 2020-07-07 2020-07-30
 Switzerland 190031
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7002Y G9130T C13584T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500895 LR862453
 2020-07-07 2020-07-30
 Switzerland 190032
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3106C C4002T G5950K G10097R C13536T C14408T G19732T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500896 LR862454
 2020-07-07 2020-07-30
 Switzerland 190033
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G9130T C13584T G14055A C14408T C16111T A23403G G25354K T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500939 LR862500
 2020-07-07 2020-07-30
 Switzerland 190083
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2921K C3037T A3557R G3564K A6887R G10265A C14408T C15720T A15972G C19718T A21323G A23403G G26700T T28759C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500940 LR862506
 2020-07-07 2020-07-30
 Switzerland 190084
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T18471C C18526T A23403G C25498T C28139T C28833T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500941 LR862505
 2020-07-07 2020-07-30
 Switzerland 190085
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T C3037T G3077R G3080K G3083K G3085K G3089K T3095C G3109K C3141Y T3144W G3720R G4105K T6890W A6967W G10265A C12880T C14408T A15972G C19718T A23403G G28077T C28603T T28759Y GGG28881AAC G29692K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500942 LR862502
 2020-07-07 2020-07-30
 Switzerland 190086
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5138C T6055C T7030W G11083T C14408T C20016T A20742C A23403G GGG28881AAC G29422T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500943 LR862503
 2020-07-07 2020-07-30
 Switzerland 190087
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10265A C14408T C15720T A15972G C19718T A21323G A23403G G26700T T28759C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500944 LR862504
 2020-07-07 2020-07-30
 Switzerland 190088
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G5950K G10097R C13536T C14408T G19732T A23403G C23731T C24082Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_503958
 2020-07-07 2020-08-01
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC-261/2020
 C241T A1163T C3037T A14246C C14408T G20679T A23403G GGG28881AAC G29706T

EPI_ISL_504040
 2020-07-07 2020-08-01
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC-262/2020
 C241T A1163T C3037T T11377C C14408T A14990G C15237T G23342A A23403G T25713C GGG28881AAC

EPI_ISL_509141
 2020-07-07 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11908G C14408T C15933T G16968T C18747T T19839C A23403G GTT26155- C28708T GGG28881AAC C29095T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509258
 2020-07-07 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000605/2020
 AT1- C241T C3037T C6762T T12503C C14408T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509262
 2020-07-07 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000609/2020
 AT1- C241T C3037T C6762T T12503C C14408T A23403G G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509271
 2020-07-07 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C6762T T12503C C14408T A23403G G25770T GGG28881AAC C29721T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_509285
 2020-07-07 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C6027T G10201T C14408T A20268G C22680T A23403G C23525T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509390
 2020-07-07 2020-08-05
 Singapore hCoV-19/Singapore/780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G8131T G11083T C13730T C17410T C19524T C23929T C26735T G27852A G27967C C28311T C29739G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509663 MT843738
 2020-07-07 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4169/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T C25624Y G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509665 MT843739
 2020-07-07 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4170/2020
 G199A C241T C1059T C2925T C3037T A9259R C14408T G15128T G17110T G18538T A23403G G25563T G26690T G29212R AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509667 MT843742
 2020-07-07 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4174/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509679 MT843740
 2020-07-07 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4171/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509680 MT843741
 2020-07-07 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4172/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17014K G17110T G18340K G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509681 MT843743
 2020-07-07 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4176/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T C17977Y G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509682 MT843744
 2020-07-07 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4177/2020
 G199A C241T C1059T C2925T C3037T C9502Y T9628Y C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509965 MT846653
 2020-07-07 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T G18985T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512646
 2020-07-07 2020-08-11
 Latvia hCoV-19/Latvia/091/2020
 C241T A1202G C3037T C12513T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_514216 MT890349
 2020-07-07 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0870/2020
 ATTA1- C241T C815T C3037T C3411T C5365T T10795C C14408T C18452T C20428T A23403G G25437T C28657T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515038
 2020-07-07 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2636/2020
 ATTAAAGGTT1- C241T C1059T C3037T C6628T G8179A C11916T C12919T C14408T C16650T C18928T A20675T A23403G G25563T C28054T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_515074
 2020-07-07 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T G18412T T20273C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516723
 2020-07-07 2020-08-21
 United States hCoV-19/USA/CA-CZB-3648/2020
 ATTAAAGGTTTA1- C218T C241T C1812T C3037T C11152T C14408T A20268G C21844A A23403G T24076C C28854T G29140T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_516735
 2020-07-07 2020-08-21
 United States hCoV-19/USA/CA-CZB-3660/2020
 ATTAAA1- C218T C241T C1812T C3037T C11152T C14408T A20268G C21844A A23403G T24076C C28854T G29140T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_516736
 2020-07-07 2020-08-21
 United States hCoV-19/USA/CA-CZB-3661/2020
 AT1-Y C218T C241T C1812T C3037T C11152T C14408T A20268G C21844A A23403G T24076C C25549T A25605R C28854T G29140T G29745K AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_516738
 2020-07-07 2020-08-21
 United States hCoV-19/USA/CA-CZB-3663/2020
 ATT1- C218T C241T C1812T C3037T C11152T C14408T A20268G C21844A A23403G T24076C C28854T G29140T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_516739
 2020-07-07 2020-08-21
 United States hCoV-19/USA/CA-CZB-3664/2020
 ATTA1- C218T C241T C1812T C3037T C11152T C14408T A20268G C21844A A23403G T24076C C28854T G29140T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_516740
 2020-07-07 2020-08-21
 United States hCoV-19/USA/CA-CZB-3665/2020
 AT1-Y C218T C241T C1812T C3037T C11152T C14408T T16062C A20268G C21844A A23403G T24076C C28854T G29140T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_516756
 2020-07-07 2020-08-22
 United States hCoV-19/USA/SC-20-1389-T14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T T833C C1059T C3037T C14408T G17298T A23403G C24865T G25563T C27964T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_516757
 2020-07-07 2020-08-22
 United States hCoV-19/USA/SC-20-1392-T14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T T833C C1059T C3037T C14408T G17298T A23403G C24865T G25563T C27964T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_516758
 2020-07-07 2020-08-22
 United States hCoV-19/USA/SC-20-1398-T14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T T833C C1059T C3037T C14408T G17298T A23403G C24865T G25563T C27964T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_516771
 2020-07-07 2020-08-22
 United States hCoV-19/USA/SC-20-1588-T07/2020
 ATTAAAGGTTTATACCT1- C19T C21A C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_516774
 2020-07-07 2020-08-22
 United States hCoV-19/USA/SC-20-1609-T07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C815T C3037T C3411T G4148T T10795C C14408T C18452T A23403G G25437T GGG28881AAC -29851T AGGAGA29860- G29868C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871CG

EPI_ISL_516776
 2020-07-07 2020-08-22
 United States hCoV-19/USA/SC-20-1633-T07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T T7153C C14408T C16349T A16373C C16616T C21110T A23403G G25563T C27964T C28846T GG29861TC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_516822
 2020-07-07 2020-08-24
 Singapore hCoV-19/Singapore/822/2020
 AT1- C3261T C6310A C6312A A10727T G11083T C13730T C16428T C19524T G21641K C23929T C27213T C28311T AAAAAAAAAAAA29892-

EPI_ISL_518034
 2020-07-07 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002444/2020
 ATTAAAGGTT1- G216T C241T C3037T C14408T C20234T A23403G C27247T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_518035
 2020-07-07 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002445/2020
 ATTAAAGGTTT1- C241T C3037T A3989G G5857T G11083T G11447A C14408T C22675T A23403G A25505T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518043
 2020-07-07 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002457/2020
 AT1- C241T C3037T A7064G C14408T C22675T A23403G C25521T C26586T T27384C GGG28881AAC G29000A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_518110 MT973161
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T G2036T G2604T G3004T C3037T G3564T T7540C G8790T G11535T G13571T G14277T C14408T G15769T G16647T G17848T C18555T G22992A G23401A A23403G G24933T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518121 MT973172
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3564T T7540C G11535T G14277T C14408T G16647T C18555T G22992A G23401A A23403G G24933T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_519564 MT970567
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520015 MT971402
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520176 MT971399
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C7600T G7798T G11029T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_520264 MT972639
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14244T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520265 MT972640
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520279 MT972654
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520280 MT972655
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520281 MT972656
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C12784T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_520295 MT972670
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520315 MT972690
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520322 MT972697
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C11109T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520373 MT972748
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520377 MT972752
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520378 MT972753
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520765 MT969827
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C6855T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520767 MT969645
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3060/2020
 ATTA1- C241T A1163T C3037T T7540C C13011T C14408T G16647T C18555T A20437G G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520768 MT969646
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C13011T C14408T G16647T C18555T A20437G G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520837 MT972566
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520838 MT972567
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3131/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520865
 2020-07-07 2020-08-25
 Australia hCoV-19/Australia/VIC3173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2948G C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25395A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520866 MT972453
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520867 MT972454
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520868 MT972455
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520869 MT972456
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23895T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520870 MT972457
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T A22492G G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520871 MT972458
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A3082G T7540C C14408T G16647T C18555T A18602G C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520872 MT972459
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23895T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520947 MT970004
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G ATT27579- GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520951 MT970013
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3272/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25572T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520952 MT969872
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520954 MT969875
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520957 MT969889
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3278/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520958 MT969891
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_520965 MT969907
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3286/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520971 MT969926
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G20919A G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520972 MT969935
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520974 MT969940
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520975 MT969945
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_520977 MT969959
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520978 MT969965
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C13011T C14408T G16647T C18555T A20437G G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520982 MT969984
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22484T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520984 MT969995
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_520985 MT969996
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520987 MT970001
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520988 MT970003
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A4397G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520996 MT969874
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C26305T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520997 MT969876
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520999 MT969878
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521001 MT969880
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3322/2020
 ATTAAAGGTTTATA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_521004 MT969883
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521007 MT969888
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521008 MT969890
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_521010 MT969893
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3331/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521032 MT969928
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3353/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521035 MT969931
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521039 MT969937
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3360/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C G14244T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521040 MT969938
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3361/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521042 MT969941
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521045 MT969944
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_521053 MT969954
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521054 MT969955
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3375/2020
 ATTAAAGGT1- C241T A1163T C3037T A6601C T7540C C14408T G16647T C18555T C22480T C22550G G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521056 MT969957
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521064 MT969969
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C16274T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521072 MT969977
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521076 MT969981
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A1163T C3037T C4832T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_521083 MT969991
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3404/2020
 ATTAAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521084 MT969992
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3405/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521086 MT969997
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3407/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_521106 MT972575
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521565 MT969578
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C T11554C C14408T G16647T C18555T C18568T G22992A G23401A A23403G G27955A GGG28881AAC

EPI_ISL_521594 MT969677
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521595 MT969678
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3736T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_521596 MT969679
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7113T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521598 MT969681
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_521600 MT969683
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2765/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T A4659G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521602 MT969685
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521603 MT969686
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521604 MT969687
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521607 MT969641
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C T27484C GGG28881AAC

EPI_ISL_521608 MT969640
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2773/2020
 C241T A1163T C3037T T7540C C14408T G16647T C18555T A20097G G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521609 MT970473
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521716 MT969620
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521717 MT969621
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521727 MT969705
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521736 MT969647
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521737 MT969648
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2906/2020
 ATTAAAGGTTTATACCTTCC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521738 MT969649
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13011T C14408T G16647T C18555T A20437G G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521741 MT969642
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521742 MT969643
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2911/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521743 MT969644
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4087G T7540C T10520C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521747 MT969703
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521748 MT969704
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521762 MT969739
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521771 MT969767
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521772 MT969768
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3656T T7540C C14408T G16647T C18555T G18905T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521773 MT969769
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22336T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521777 MT969772
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521778 MT969773
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T C6318T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521779 MT969774
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2949/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_521780 MT969775
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2950/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C12784T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521782 MT969777
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15732A G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521783 MT969778
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C28732T GGG28881AAC

EPI_ISL_521785 MT969780
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521786 MT969781
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_521790 MT969784
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521796 MT969789
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521798 MT969790
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521799 MT969791
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521801 MT969793
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7113T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521802 MT969794
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521803 MT969795
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC

EPI_ISL_521810 MT969801
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_521811 MT969802
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2981/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521812 MT969803
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_521813 MT969804
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521815 MT969806
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C T27484C GGG28881AAC

EPI_ISL_521816 MT969807
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521818 MT969809
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521819 MT969810
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T A6248G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521820 MT969811
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521822 MT969813
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521824 MT969814
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2994/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521826 MT969815
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G11771A T12015G C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521828 MT969816
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C25889T GGG28881AAC

EPI_ISL_521829 MT969817
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521830 MT969818
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521832 MT969820
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521833 MT969821
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3003/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521834 MT969822
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521835 MT969823
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521838 MT969825
 2020-07-07 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3008/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522487
 2020-07-07 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2708/2020
 ATTA1- C241T G1946A C3037T C14408T A23403G T23857C C24381T C25513T GGG28881AAC C29743T

EPI_ISL_522806
 2020-07-07 2020-08-26
 United States hCoV-19/USA/VA-DCLS-0795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C815T C3037T C3411T T10795C C14408T C17339T C18452T A23403G G25437T GGG28881AAC C29870A

EPI_ISL_522807
 2020-07-07 2020-08-26
 United States hCoV-19/USA/VA-DCLS-0796/2020
 ATTAAAGGTT1- C241T C815T C3037T C3411T T10795C C14408T C17339T C18452T A23403G G25437T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_522808
 2020-07-07 2020-08-26
 United States hCoV-19/USA/VA-DCLS-0797/2020
 ATTAAAGGTT1- C241T C815T C3037T C3411T C6573T T10795C C14408T CT16163TC C18452T A23403G G25437T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_522809
 2020-07-07 2020-08-26
 United States hCoV-19/USA/VA-DCLS-0798/2020
 ATTA1- C241T C815T C3037T C3411T C6573T T10795C C14408T C18452T A23403G G25437T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_523121
 2020-07-07 2020-08-26
 Netherlands hCoV-19/Netherlands/DR-EMC-10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2305T C3037T C14408T G20352T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523272
 2020-07-07 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2695T C3037T G5194T A5560G G10265A C14408T C15141T A15972G T19497C C19718T C21077T A23403G G26439T C26461T G28077T T28759C GGG28881AAC C29149T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_525189 MT940509
 2020-07-07 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T511C C1059T C2143T C3037T A5560T C8092T C10319T A10724G C13225T C14408T C19170T C22120T A23403G A23474G C24378T C24384T G25563T C27964T G29868A C29870A

EPI_ISL_525190 MT940510
 2020-07-07 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1159/2020
 ATTA1- C241T T511C C1059T C2143T C3037T A5560T C8092T C10319T A10724G C13225T C14408T C19170T C22120T A23403G A23474G C24378T G25563T C27964T

EPI_ISL_525192 MT940512
 2020-07-07 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T G526T C1059T C3037T T6949C C11916T C14408T T17607C C18998T A20055G A23403G G25563T G25947C G29540A C29870A

EPI_ISL_525715
 2020-07-07 2020-09-01
 United States hCoV-19/USA/WA-S2725/2020
 ATTAAAGGTTTATAC1- C241T G248T C335T C1059T C3037T T4138G C9120T A12197C C14408T C15951T G22918T A23403G G25563T C29835T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_525716
 2020-07-07 2020-09-01
 United States hCoV-19/USA/WA-S2726/2020
 AT1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T C28657T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525944
 2020-07-07 2020-09-01
 United States hCoV-19/USA/OR-OHSU-0993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C27393T C28854T

EPI_ISL_525950
 2020-07-07 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1911T C3037T C13536T C14408T C15933T G16968T C17304T T19839C A23403G GGG28881AAC

EPI_ISL_525951
 2020-07-07 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1961A C3037T C9360T C14408T A20268G A23403G T24076C C26735T C28854T

EPI_ISL_525952
 2020-07-07 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6525T C14408T T17772C A20268G C20759T A23403G T24076C C28854T

EPI_ISL_525953
 2020-07-07 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G343T C3037T C14408T T18392C A20268G C20759T A23403G T24076C G27163T C28854T C29530T

EPI_ISL_525954
 2020-07-07 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15933T C16289T G16968T T19839C C22224T A23403G T28014C C28826T GGG28881AAC

EPI_ISL_525955
 2020-07-07 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11824T C14408T A18259G G18397A A20268G A23403G C28854T C28887T

EPI_ISL_526895
 2020-07-07 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C815T C3037T C3411T T10795C C14408T C17339T C18452T A23403G G25437T GGG28881AAC G29449T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_526896
 2020-07-07 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0791/2020
 ATT1- C241T C815T C3037T C3411T C6573T T10795C C14408T C18452T A23403G G25437T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_526897
 2020-07-07 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0793/2020
 ATTAAAGGTTTATACC1- C241T C815T C3037T C3411T C6573T T10795C C14408T CT16163TC C18452T A23403G G25437T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_526898
 2020-07-07 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0794/2020
 ATTA1- C241T C815T C3037T C3411T C6573T T10795C C14408T C18452T A23403G G25437T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_526967
 2020-07-07 2020-09-02
 Colombia hCoV-19/Colombia/covo-289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5392T C7765T C14408T A20268G A23403G T23443C G25785T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527749
 2020-07-07 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0081/2020
 ATTAAAGGTTTATACCTT1- C241T C478A C1059T C1380T C2716T C3037T A6403G C7482T C12919T C14408T C17010T A23403G G25563T C25810T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_529010
 2020-07-07 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE92551/2020
 ATTAAAGGTTTATA1- C21A C241T C313T A2923G C3037T A6866W A6869W C11124T G14118T C14408T G19816T A23403G GGG28881AAC A29567G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_529011
 2020-07-07 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE92552/2020
 A1- C241T C313T CCA2508YSW A2923G C3037T G3689A A6866W A6869W C11124T G14118T C14408T G19816T A23403G GGG28881AAC A29567G G29868C AAAAAAAAAA29894-

EPI_ISL_534755
 2020-07-07 2020-09-14
 United Kingdom hCoV-19/England/LIVE-A984D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1450T C2416T C3037T G3896T G8371T G11083T C14408T C20148T C22477T T22744C A23403G G23879C G25563T C28377T

EPI_ISL_535650 MW001667
 2020-07-07 2020-09-15
 United States SARS-CoV-2/human/USA/AR-CDC-0837/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T C25624T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535651 MW001880
 2020-07-07 2020-09-15
 United States SARS-CoV-2/human/USA/AR-CDC-0838/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535652 MW001668
 2020-07-07 2020-09-15
 United States SARS-CoV-2/human/USA/AR-CDC-0840/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_540446
 2020-07-07 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2867A C3037T C7083T G7393T G9526T T10093A C14408T G14580T G18498T G21974C A23403G T24544C C26013T C27143T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541666
 2020-07-07 2020-09-21
 United States hCoV-19/USA/SC-DHEC-1083/2020
 ATTAAAGGTT1- C241T C3037T G4511A C6633T C10376T T13339C C14408T A23403G GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_542029
 2020-07-07 2020-09-23
 United States hCoV-19/USA/NMDOH-2020183909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C14408T G19891T G22021A A23403G C24378T G25563T C28887T C29870A

EPI_ISL_542030
 2020-07-07 2020-09-23
 United States hCoV-19/USA/NMDOH-2020185052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C14408T G22021A A23403G G25563T C28887T

EPI_ISL_542031
 2020-07-07 2020-09-23
 United States hCoV-19/USA/NMDOH-2020189536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T G1141T C3037T C6629T T8041C C14408T G19009T G20134T G22225T G23311T A23403G G25563T G27583T G27703T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_542032
 2020-07-07 2020-09-23
 United States hCoV-19/USA/NMDOH-2020189541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C8655T C14408T G22021A A23403G G25563T C28887T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_542035
 2020-07-07 2020-09-23
 United States hCoV-19/USA/NMDOH-2020189658/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11758T T12133C C14408T C16260T G22346T A23403G C23625T G25563T G27955A C28821A C29870A

EPI_ISL_545692
 2020-07-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-7900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C1059T T1438G C3037T C4931A G9479T C14408T C17119A C18508T C19273T C23191T A23403G G25563T G28851A C29409T G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545765
 2020-07-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-7984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G248T C335T C1059T T2330G C3037T C3602T C9120T A12197C C14408T T16425G C22450T A23403G C24130T G25563T T27384C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545786
 2020-07-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-8008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C11752T C14408T C16017T T19284C A23403G C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545800
 2020-07-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-8029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C498T C1059T C3037T A8087C C10319T C13168T C14408T C15933T G16622A G20635C A23403G C23439T G25563T C27964T G28080A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545802
 2020-07-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-8030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G6461A C11916T C14408T A23403G G25563T C28310T G29737A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545831
 2020-07-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-8066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A C15352T A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_545833
 2020-07-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-8068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A T18291C A23403G C24378T G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547316
 2020-07-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-6213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T G4105T C14408T C16017T A23403G C24378T C24718A T27212C G27561T C27600T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547420
 2020-07-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-6365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C3037T C6638T C14408T C16017T C16611T A23403G C24718A C26606T T27212C G27561T C27600T C29421T C29762T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547421
 2020-07-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-6366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1057T G2282A C3037T A5420G T9742C C9967T C14408T C17639T G21793T A23403G C29025T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547424
 2020-07-07 2020-09-24
 United States hCoV-19/USA/TX-HMH-6370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C10969T G13618T C14408T C20474T A23403G GGG28881AAC C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548256
 2020-07-07 2020-09-25
 Sweden hCoV-19/Sweden/20-52355/2020
 C241T GGTCTT1598- C3037T G3896T C14352T C14408T C16887T A23403G GGG28881AAC

EPI_ISL_549122
 2020-07-07 2020-09-28
 Norway hCoV-19/Norway/2866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T G2879A C3037T C6990T G9526T C14408T C18877T A23403G C23638T G25563T C25710T C26735T G29759T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556138
 2020-07-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-632412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C2113T C3037T C3714T A5317G C14408T A16474G G20996T A23403G G25912T GGG28881AAC C29045T C29269A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556157
 2020-07-07 2020-09-28
 United Kingdom hCoV-19/England/ALDP-63D462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C7528T G10097A C13536T C14408T G20569T G22199T A23403G C23731T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564209
 2020-07-07 2020-09-30
 Australia hCoV-19/Australia/VIC7050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T G558K G660K A1163T G2036K G2604K C3037T C3505Y G3564K G5375K G7038K T7540C G9141K G9249K G10986K G11392K G11535K G12164K G13571K G14277K C14408T G16647T G17096K C17850T C18138M C18555T G22018K G22899K G22992A G23401A A23403G G24557K G24933K G26262K G28079K C28253T GGG28881AAC G29779K G29781K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564291
 2020-07-07 2020-09-30
 Australia hCoV-19/Australia/VIC7220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565849
 2020-07-07 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C335T C1059T C3037T T5290C C14408T T16425G C17639T C21575T A23403G G25489T G25563T C26455T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_569612
 2020-07-07 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0004/2020
 A1G C241T C2070T C3037T C11050T C14408T G21785A A23403G C23613T C24904T GGG28881AAC A29056G C29718T A29865G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_569613
 2020-07-07 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0005/2020
 ATTA1- A38R C241T C2070T C3037T C11050T C14408T G21785A A23403G C23613T C24904T GGG28881AAC A29056G C29718T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MT762397
 2020-07-07 2020-07-15
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_255/2020
 C241T A1163T C3037T C3961T G4300T A6108G G12817T G13920A C14408T G15982T A19368C G19723T A23403G G25526T C25583T GGG28881AAC C29095T

MT762398
 2020-07-07 2020-07-15
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_257/2020
 C241T C1593T C2940T C3037T T12181C C14408T C18877T C20320T A21174G C22444T A23403G C24223T G25494T G25563T G25699T C26735T T26948C C28854T

MT762942
 2020-07-07 2020-07-15
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_246/2020
 C241T C683T A1163T C3037T A8026G C14408T A23403G GGG28881AAC

MT762943
 2020-07-07 2020-07-15
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_247/2020
 C241T A1163T C3037T C6445T C14408T A23403G GGG28881AAC

MT762944
 2020-07-07 2020-07-15
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_248/2020
 C241T A1163T C3037T C14408T G16852T A23403G G25647A GGG28881AAC

MT919778
 2020-07-07 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-4402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G942A C3037T G3641A C12053T C14408T C20133T A23403G G25088T G27816A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MT947550
 2020-07-07 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2725/2020
 ATTAAAGGTTTATAC1- C241T G248T C335T C1059T C3037T T4138G C9120T A12197C C14408T C15951T G22918T A23403G G25563T C29835T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT947568
 2020-07-07 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2726/2020
 AT1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T C28657T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT955171
 2020-07-07 2020-08-29
 Tunisia SARS-CoV-2/human/TUN/TUN_ADAGE_4870/2020
 ATT1- A361G C1943Y T5359C G6337T C8327Y C8782T C11575T C21639M G22468T G27754T T28144C G28878A G29449T G29742A

MT955172
 2020-07-07 2020-08-29
 Tunisia SARS-CoV-2/human/TUN/TUN_ADAGE_4761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G3340T C7279T C14408T C18928T A23403G C27769T GGG28881AAC

MT955173
 2020-07-07 2020-08-29
 Tunisia SARS-CoV-2/human/TUN/TUN_ADAGE_4681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1404T C3037T C8097T C14408T C18877T C22444T A23403G G25563T C28854T G28985T G29742A GTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29810-

MW009107
 2020-07-07 2020-09-16
 United States SARS-CoV-2/human/USA/UF-27/2020
 ATTAAAGGTTTA1- C241T C1059T C1385T G1738T C3037T G3242A C7318T C11916T C14408T A23403G G25563T A26319G C28087T AA29902-

MW009255
 2020-07-07 2020-09-16
 United States SARS-CoV-2/human/USA/UF-28/2020
 ATTAAAGGTTTAT1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T C26060T C27012T GGG28881AAC AA29902-

MW021457
 2020-07-07 2020-09-21
 United States SARS-CoV-2/human/USA/COVID20-1083/2020
 ATTAAAGGTT1- C241T C3037T G4511A C6633T C10376T T13339C C14408T A23403G GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_492989
 2020-07-08 2020-07-20
 Latvia hCoV-19/Latvia/066/2020
 C241T A1202G C3037T C12513T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_492990
 2020-07-08 2020-07-20
 Latvia hCoV-19/Latvia/055/2020
 C241T A1202G C3037T C12513T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_492991
 2020-07-08 2020-07-20
 Latvia hCoV-19/Latvia/056/2020
 C241T A1202G C3037T C12513T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_492993
 2020-07-08 2020-07-20
 Latvia hCoV-19/Latvia/058/2020
 C241T A1558G C3037T T3289C C13860T C14408T A23403G GGG28881AAC

EPI_ISL_492994
 2020-07-08 2020-07-20
 Latvia hCoV-19/Latvia/059/2020
 C241T A1558G C3037T T3289C C13860T C14408T A23403G GGG28881AAC

EPI_ISL_493548
 2020-07-08 2020-07-21
 United Kingdom hCoV-19/England/NOTT-1127D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497830
 2020-07-08 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497861
 2020-07-08 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498078
 2020-07-08 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0535/2020
 A1- C241T C835T C3037T C6762T T12503C G13379A C14408T G19735T A19805G A23403G G25770T C27143T GGG28881AAC C29721T

EPI_ISL_498117
 2020-07-08 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0579/2020
 AT1- C241T C3037T A7064G C7093T C14408T C22675T A23403G C25509T T27384C G28347T GGG28881AAC G29044A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_498123
 2020-07-08 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0585/2020
 A1- G174T C241T C3037T T3798C C9857T C14408T T20367C A22155G A23403G A23920G A26530G G27561T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_498124
 2020-07-08 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0586/2020
 A1- T194C C241T C3037T A7064G C7093T C14408T C22675T A23403G T27384C G28347T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_498126
 2020-07-08 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0588/2020
 ATTA1- G174T C241T C3037T T3798C C9857T C14408T T20367C A23403G A23920G A26530G G27561T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_498581
 2020-07-08 2020-07-27
 Singapore hCoV-19/Singapore/683/2020
 ATTAA1- C6310A C6312A G11083T C12400T C13730T T17497C C19524T T21775C C23929T G25907A C28311T AAAAAAAAAAAA29892-

EPI_ISL_498587
 2020-07-08 2020-07-27
 Singapore hCoV-19/Singapore/689/2020
 ATTAAAGGTTTATACCT1- C2245T C6310A C6312A T8731C G11083T C11941T C13730T C17802A C19524T C20468T C23929T C25511T C28311T AAAAAAAAAAAA29892-

EPI_ISL_499379
 2020-07-08 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168FEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C12781T C14408T G21624T A23403G G27877T GGG28881AAC

EPI_ISL_499393
 2020-07-08 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-1690D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G G27877T A28523G GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_499970
 2020-07-08 2020-07-28
 United Kingdom hCoV-19/England/CAMB-1B5607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1620G C3037T C4002T A6604G G10097A C13536T C14408T A23403G C23731T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500113
 2020-07-08 2020-07-28
 United Kingdom hCoV-19/England/LIVE-A5252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7764T C9474T C14408T C15237T C17822T A23403G C26133T GGG28881AAC T29753C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500795
 2020-07-08 2020-07-29
 Norway hCoV-19/Norway/2876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6402T G6421T C14408T A16734G A20268G A23403G G24794T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500897 LR862463
 2020-07-08 2020-07-30
 Switzerland 190034
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3106C C4002T G5950K G10097R C13536T C14408T G19732T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500898 LR862461
 2020-07-08 2020-07-30
 Switzerland 190035
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2396G C3037T G11842A A12759G C13119Y C14408T C14980Y T15056Y G18292T A20268G A23403G G25033T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500899 LR862471
 2020-07-08 2020-07-30
 Switzerland 190036
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2065Y C3037T C4002T G5950K G10097R C13536T C14408T G19732T A23403G C23731T C24082Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500901 LR862462
 2020-07-08 2020-07-30
 Switzerland 190039
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G571K C1960Y C3037T T3144K G3564K T6904Y T9919W T10076W G10265A C12525T C14408T C14760T C15746T A15972G A16210W C16407M T17675Y C19718T A20465R C21846T A23122M C23277T A23403G C25521T T28759Y GGG28881AAC C29518T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500902 LR862459
 2020-07-08 2020-07-30
 Switzerland 190040
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2990K C3037T T3144K T3568Y C3737Y G3770R C6267T T6923K T9961C G10265A G12052T C14408T A15972G C16178T T17675Y G19648T C19718T T22098Y A23403G A25492G T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500903 LR862472
 2020-07-08 2020-07-30
 Switzerland 190041
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T T18471C C18526T A23403G G23856R C25498T T26157D C28139T C28833T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500904 LR862469
 2020-07-08 2020-07-30
 Switzerland 190042
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2966R C3037T A3076R T3095W T3144K C4002T G5950K G10097R C13536T C14408T G16647T G19732T A23403G C23731T C24082Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500905 LR862470
 2020-07-08 2020-07-30
 Switzerland 190043
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1312T C3037T T6988K G9130T C14408T C16111T A23403G T27319C C28391T G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500906 LR862465
 2020-07-08 2020-07-30
 Switzerland 190044
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C337Y C3037T A6912W C14408T C15324T C19097T A23403G C28706T G28881T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500908 LR862466
 2020-07-08 2020-07-30
 Switzerland 190046
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G5950K T6937Y G10097R C13536T C14408T G19732T G20931T A23403G C23731T C23996S GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500909 LR862467
 2020-07-08 2020-07-30
 Switzerland 190047
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G5950K A7015R T7030W G10097R C13536T C14408T G19732T G20931T A23403G C23731T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500945 LR862507
 2020-07-08 2020-07-30
 Switzerland 190090
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G3113K A3137R C5787T G10265A C14408T C15720T A15972G C17285T C19718T A23403G G26700T T28759C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501275
 2020-07-08 2020-07-31
 Latvia hCoV-19/Latvia/067/2020
 C241T A1558G C3037T T3289C C13860T C14408T A23403G GGG28881AAC

EPI_ISL_509521
 2020-07-08 2020-08-05
 Australia hCoV-19/Australia/NSW2520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23311C G23401A A23403G G27088T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509670 MT843745
 2020-07-08 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4178/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509671 MT843747
 2020-07-08 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4186/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509672 MT843748
 2020-07-08 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4187/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509673 MT843749
 2020-07-08 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4190/2020
 G199A C241T C1059T C2925T C3037T A12759C C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509674 MT843750
 2020-07-08 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4191/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509675 MT843746
 2020-07-08 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4185/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509676 MT843751
 2020-07-08 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4193/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509683 MT843757
 2020-07-08 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4181/2020
 G199A C241T C1059T C2925T C3037T ATG8898- C14408T G15128T G17110T G18538T T20688C A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509799 MT846558
 2020-07-08 2020-08-05
 United States SARS-CoV-2/human/USA/CA-UW-869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T A5535T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509800 MT846547
 2020-07-08 2020-08-05
 United States SARS-CoV-2/human/USA/IL-UW-857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2232T C2939T C3037T C4113T T4946G C7104T C12025T C14408T T19839C A23403G C23707T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509853 MT846537
 2020-07-08 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T C21780T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509856 MT846540
 2020-07-08 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9967T G10902A T10906C G11083T C14408T C18687T A23403G G25563T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509869 MT846555
 2020-07-08 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2232T C2939T C3037T T4946G C7104T C9967T C12025T C14408T T19839C A23403G C23707T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509872 MT846559
 2020-07-08 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C A1982G C3037T G3871T T3931C C4226T C5672T A7837C G11083T C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512235
 2020-07-08 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C2143T C3037T C7768T C11575T C14408T A20268G G23009T A23403G C28854T

EPI_ISL_512236
 2020-07-08 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2143T C3037T C7768T C11575T C14408T G16912T A20268G A23403G C28854T

EPI_ISL_512238
 2020-07-08 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1927/2020
 ATTAAAG1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G GCTGGA25781- C28854T

EPI_ISL_512240
 2020-07-08 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1929/2020
 ATTAAAGGTTTA1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_512244
 2020-07-08 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2143T C3037T T6283C C7768T C11575T C14408T C15738T A20268G A23403G C28854T

EPI_ISL_512245
 2020-07-08 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_512248
 2020-07-08 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2143T C3037T A5877G C7768T C11572T C11575T C14408T A20268G A23403G G25471T C28854T

EPI_ISL_512250
 2020-07-08 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2143T C3037T C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_514220 MT890353
 2020-07-08 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0874/2020
 A1- C241T C815T C3037T C3411T C7086T T10795C C14408T C18452T A23403G G25437T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515039
 2020-07-08 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2637/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_515040
 2020-07-08 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2638/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T C18928T C23058G A23403G G26230C G27396T G27583T GGG28881AAC AAAAAAAAAAAAAAAA29888-

EPI_ISL_515568
 2020-07-08 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T G11447A C14408T C22675T A23403G C27630T G28077T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515573
 2020-07-08 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002171/2020
 C241T C3037T G11447A C14408T C22675T A23403G G28077T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515575
 2020-07-08 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002173/2020
 ATTAAAGG1- C241T C3037T C6762T T12503C C14408T C16887T G21641T A23403G G25455T G25770T G26116T GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515580
 2020-07-08 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T A929G C3037T C10029T C14408T C22675T A23403G GGG28881AAC G29449T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_515586
 2020-07-08 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002187/2020
 ATTAAAGG1- C241T C3037T A7064G C13059T C14408T C19113T C22675T A23403G T27384C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_516412
 2020-07-08 2020-08-20
 United States hCoV-19/USA/MI-MDHHS-SC21685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C683Y G2879A C3037T A5106C G8006A C9907T A10042G T12094C C14408T G14874K C18189T C18246T A23403G GGG28881AAC G29734A TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_516428
 2020-07-08 2020-08-20
 North Macedonia hCoV-19/North Macedonia/6497/2020
 ATT1- C241T C3037T C3130T C5784T A6529G C12754T C14408T G19962T A23403G C28153T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_516741
 2020-07-08 2020-08-21
 United States hCoV-19/USA/CA-CZB-3666/2020
 ATT1- C218T C241T C1812T C3037T C11152T C14408T A20268G C21844A A23403G T24076C C28854T G29140T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_516765
 2020-07-08 2020-08-22
 United States hCoV-19/USA/SC-20-1419-T14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T A7993G C8139T C10376T C14408T C14937T T22287C A23403G A25336T G28044T GGG28881AAC GG29861TC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_516766
 2020-07-08 2020-08-22
 United States hCoV-19/USA/SC-20-1448-T14/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C3828T A7993G C8139T C10376T C14408T T22287C A23403G A25336T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_516809
 2020-07-08 2020-08-24
 Singapore hCoV-19/Singapore/809/2020
 ATTAAAGGTTTATACC1- C1201T C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C24374Y C28311T A29533G G29616T AAAAAAAAAAAA29892-

EPI_ISL_517839 MT966076
 2020-07-08 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1385T G1738T C3037T G3242A C11003T C11916T C14408T A19212G A23403G G25563T C25614T C28087T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_517840 MT966077
 2020-07-08 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0950/2020
 AT1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T C27143A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_517846 MT966083
 2020-07-08 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0956/2020
 ATT1- C241T C1059T A2215G C3037T A4197G C8660T C14408T T16483C A23403G G25563T C28435T G29651T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_518480 MT971416
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_519369 MT970302
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G6647A T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520171 MT971393
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T10967C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520174 MT971397
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5411/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520178 MT971404
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520180 MT971407
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520268 MT972643
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520272 MT972647
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520273 MT972648
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15654T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520274 MT972649
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_520284 MT972659
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13011T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520289 MT972664
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3540/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_520293 MT972668
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_520300 MT972675
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520303 MT972678
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T C15615T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520304 MT972679
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520305 MT972680
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520306 MT972681
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520309 MT972684
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520312 MT972687
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520316 MT972691
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520317 MT972692
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15615T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520320 MT972695
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25784T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520325 MT972700
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520326 MT972701
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520327 MT972702
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T12370C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520328 MT972703
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520346 MT972722
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520370 MT972745
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C3903T T7540C C7728T C9474T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520374 MT972749
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C8327T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520375 MT972750
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3635/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520379 MT972754
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3639/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520381 MT972756
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29027T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520383 MT972758
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_520385 MT972760
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520390 MT972765
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520541 MT970192
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21327T C22480T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520542 MT970193
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520632 MT970165
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18652T G22992A G23401A A23403G GGG28881AAC ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_520769 MT969690
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520770 MT969691
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3063/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520771 MT969692
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520849 MT969837
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3142/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520861 MT969850
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3155/2020
 ATTAAAGGTTT1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520946 MT970002
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520956 MT969887
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_520960 MT969896
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520961 MT969901
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520962 MT969902
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_520967 MT969909
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T A1163T C3037T C4890T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_520968 MT969911
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C4345T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520969 MT969913
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_520979 MT969966
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520980 MT969967
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_520992 MT970008
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3313/2020
 ATTAAAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520993 MT970010
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_521000 MT969879
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3321/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521006 MT969885
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521015 MT969900
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521016 MT969903
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521018 MT969910
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21108T TTA21991- G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521019 MT969912
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521020 MT969914
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_521021 MT969916
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3342/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_521022 MT969917
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521023 MT969918
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521024 MT969919
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521025 MT969920
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3346/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521026 MT969921
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C11109T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_521027 MT969922
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T4708C T7540C C13377T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521028 MT969923
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18267T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521029 MT969924
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_521030 MT969925
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3351/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521031 MT969927
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521033 MT969929
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G28514T GGG28881AAC G29692T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521034 MT969930
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521036 MT969932
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521037 MT969933
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_521038 MT969934
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3359/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_521050 MT969951
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521059 MT969961
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521060 MT969962
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_521061 MT969963
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3425T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_521066 MT969971
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521067 MT969972
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521069 MT969974
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3390/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521071 MT969976
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3392/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521074 MT969979
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26256T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521091 MT970086
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_521141 MT972612
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3480/2020
 ATTAAAGG1- T9C C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521143 MT972614
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC C29722T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521144 MT972615
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A T23017G G23401A A23403G C23895T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521147 MT972618
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521148 MT972619
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521564 MT969577
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2729/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521719 MT969695
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2888/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T20799C G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521728 MT969715
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_521729 MT969716
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521730 MT969717
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C7113T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521731 MT969718
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521732 MT969719
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13458T C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521744 MT969688
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2913/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C A10055G C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521745 MT969689
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2914/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521746 MT969694
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_521750 MT969727
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC

EPI_ISL_521751 MT969728
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC

EPI_ISL_521767 MT969743
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T11554C C14408T G16647T C17999T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521768 MT969744
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2937/2020
 ATTAAAGGTTTATACCTTCCC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521770 MT969766
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5147T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_521775 MT969770
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2945/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_521776 MT969771
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521792 MT969785
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2962/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521793 MT969786
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521794 MT969787
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_521805 MT969800
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521831 MT969819
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23758T GGG28881AAC

EPI_ISL_521837 MT969824
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521839 MT969826
 2020-07-08 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14244T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522488
 2020-07-08 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2709/2020
 A1- A4G C241T G1946A G2305T C3037T C14408T C16580T A23403G C24381T C25513T GGG28881AAC C29743T

EPI_ISL_522489
 2020-07-08 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2710/2020
 AT1- C241T C3037T C3373A C6883T T10150C C13821T C14408T G21724A G22203T A23403G GGG28881AAC

EPI_ISL_522817
 2020-07-08 2020-08-26
 United States hCoV-19/USA/VA-DCLS-0810/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C25658T G28457A G29179T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_522818
 2020-07-08 2020-08-26
 United States hCoV-19/USA/VA-DCLS-0811/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C25658T G28457A G29179T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_522819
 2020-07-08 2020-08-26
 United States hCoV-19/USA/VA-DCLS-0812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C25658T G28457A G29179T C29870A

EPI_ISL_523380
 2020-07-08 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T AAT6506- G12795A G14274A C14408T A17008G T21379C G22346T A23403G A24862G C25936T C26013T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523381
 2020-07-08 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T AAT6506- G12795A G14274A C14408T A17008G G22346T A23403G A24862G C25936T C26013T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524893
 2020-07-08 2020-08-28
 United States hCoV-19/USA/MD-MDH-0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C66T C241T C1059T C3037T C13761T C14408T C17069T A23403G G25563T C26801T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_524894
 2020-07-08 2020-08-28
 United States hCoV-19/USA/MD-MDH-0129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C66T C241T C1059T C3037T C13761T C14408T C17069T A23403G G25563T C26801T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_524895
 2020-07-08 2020-08-28
 United States hCoV-19/USA/MD-MDH-0130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C18877T A23403G G25563T C28890T T29710A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_524896
 2020-07-08 2020-08-28
 United States hCoV-19/USA/MD-MDH-0132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T T10153C C13487T C14408T C16260T C18652T C19488T C19862T A23403G G25563T G26690T C28821A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_525200 MT940520
 2020-07-08 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1173/2020
 C241T C1059T T1907C C3037T A6481G C10015T C14408T G14829T C15654T C23191T A23403G G25563T G26769T C28057T C28253T C28831T C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_525201 MT940521
 2020-07-08 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1174/2020
 ATT1- C241T C1059T T1907C C3037T C10015T C14408T G14829T C15654T C23191T A23403G G25563T G26769T C28057T C28253T C28854T G29868R C29870A

EPI_ISL_525202 MT940522
 2020-07-08 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1175/2020
 ATT1- C241T C1059T C3037T C10702T C13740A C14408T A23403G G25563T C25658T G29179T

EPI_ISL_525717
 2020-07-08 2020-09-01
 United States hCoV-19/USA/WA-S2727/2020
 ATTAAAGGTTTAT1- A1829G C3037T G7360T C14408T C18086T T19839C A23403G G27430A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525718
 2020-07-08 2020-09-01
 United States hCoV-19/USA/WA-S2728/2020
 ATTAAAGGTTTA1- C241T C3037T G6356A C7113T C8991T T14238C C14408T A18270C T18989C C21058T A23403G C23525T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525947
 2020-07-08 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2884C C3037T G4285T C9778T C14408T A20268G A23403G C28854T C28887T

EPI_ISL_525948
 2020-07-08 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4834G C14408T A20268G A23403G C28854T

EPI_ISL_525957
 2020-07-08 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1514T C2450T C3037T A7068G T7882C C8078T G11837T C14408T A17219G A23403G G25563T A28870T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_525958
 2020-07-08 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1047/2020
 ATTAAAGGTTTATA1- C241T C3037T C14408T A20268G A23403G G25352T C28854T C29274A

EPI_ISL_525959
 2020-07-08 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1514T C2450T C3037T G6309C C6312T A7068G T7882C C8078T G11837T C14408T A17219G T18906C C22993T A23403G G25563T A28870T

EPI_ISL_525960
 2020-07-08 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1514T C3037T A7068G C8078T G11837T C14408T T15816G A23403G G25563T A28870T

EPI_ISL_526390
 2020-07-08 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A975F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C1912T C3037T G4180T T10453Y G11083T C11195T C14408T A23403G A25003G GGG28881AAC C29870A

EPI_ISL_526853
 2020-07-08 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4201T G5539A C8664A G8851A C14408T T22573C A23403G A25505C G28747T GGG28881AAC G29474T C29870A

EPI_ISL_527752
 2020-07-08 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C222T C241T C3037T A3058G G10360A C11747T C14408T G14712T G15957T C17939T C19027T A23403G C25096T C26801G GGG28881AAC C29642T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_528486
 2020-07-08 2020-09-07
 United States hCoV-19/USA/AK-PHL1005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G17193T A18424G C21304T A23403G G25907T C27964T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533010
 2020-07-08 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A508E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G C6706Y A8659G G12721K C14408T G15243T G18782T C19488T G22225T T22906C A23403G T27501G GGG28881AAC G29736C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533042
 2020-07-08 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A8FF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1261A C2536T C3037T C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533113
 2020-07-08 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A774B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4832T C11289T C14408T T15051C A20255G A23403G C28657Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533215
 2020-07-08 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A532B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3569G G3849T A6211G A8659G G12721T C14408T G15243T G18782T C19488T G22225T T22906C A23403G T27501G GGG28881AAC G29736C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535653 MW001881
 2020-07-08 2020-09-15
 United States SARS-CoV-2/human/USA/AR-CDC-0843/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535654 MW001669
 2020-07-08 2020-09-15
 United States SARS-CoV-2/human/USA/AR-CDC-0848/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_540455
 2020-07-08 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7016T C14408T C21621T A23403G G28090T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541667
 2020-07-08 2020-09-21
 United States hCoV-19/USA/SC-DHEC-1084/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T T7153C C14408T C16349T A16373C C21110T C23280T A23403G G25563T C27964T C28846T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_547602
 2020-07-08 2020-09-24
 United States hCoV-19/USA/WI-GMF-09851/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C715T C1059T G2036T C3037T C4686T C11916T C14408T AA21550MW G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547603
 2020-07-08 2020-09-24
 United States hCoV-19/USA/WI-GMF-09884/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2910T C3037T C14408T C15720T C19118Y A20268G C22326Y A23403G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547604
 2020-07-08 2020-09-24
 United States hCoV-19/USA/IA-GMF-09911/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C2061T C3037T C14408T A23403G A25048T G25563T C26625T C29614T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_547605
 2020-07-08 2020-09-24
 United States hCoV-19/USA/WI-GMF-09931/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G1312T C3037T C6627T C8016T C13115T C14408T AA21550MW A23403G T25929G C27972T G28300T G28883A A28998G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547606
 2020-07-08 2020-09-24
 United States hCoV-19/USA/WI-GMF-09934/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C64T C241T C1059T C3037T C14408T C15324T C16260T C21575T C21622T C22329Y A23403G G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_560309
 2020-07-08 2020-09-28
 Russia hCoV-19/Russia/SVE-RII-MH184S/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T G19684T A23403G GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_560310
 2020-07-08 2020-09-28
 Russia hCoV-19/Russia/SVE-RII-MH187S/2020
 ATTAAAGGTTTATAC1- C241T C3037T C3811T C3903T C14408T C18885T G19656T A23403G G27561T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_564269
 2020-07-08 2020-09-30
 Australia hCoV-19/Australia/VIC7189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564271
 2020-07-08 2020-09-30
 Australia hCoV-19/Australia/VIC7190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_569000
 2020-07-08 2020-10-02
 France hCoV-19/France/IHU-0945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569003
 2020-07-08 2020-10-02
 France hCoV-19/France/IHU-0949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569006
 2020-07-08 2020-10-02
 France hCoV-19/France/IHU-0954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C186T C241T C3037T G3053A A8094C C12115T C14408T C15738T C17639T T19839C G20002T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT937318
 2020-07-08 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C66T C241T C1059T C3037T C13761T C14408T C17069T A23403G G25563T C26801T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT937319
 2020-07-08 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C66T C241T C1059T C3037T C13761T C14408T C17069T A23403G G25563T C26801T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT937320
 2020-07-08 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C18877T A23403G G25563T C28890T T29710A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT947566
 2020-07-08 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2728/2020
 ATTAAAGGTTTA1- C241T C3037T G6356A C7113T C8991T T14238C C14408T A18270C T18989C C21058T A23403G C23525T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT947581
 2020-07-08 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2727/2020
 ATTAAAGGTTTAT1- A1829G C3037T G7360T C14408T C18086T T19839C A23403G G27430A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MW012266
 2020-07-08 2020-09-17
 Serbia SARS-CoV-2/human/SRB/NP44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T G10265A C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29717A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW012276
 2020-07-08 2020-09-17
 Serbia SARS-CoV-2/human/SRB/NP20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T G10105T G10265A G11851T C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW021458
 2020-07-08 2020-09-21
 United States SARS-CoV-2/human/USA/COVID20-1084/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T T7153C C14408T C16349T A16373C C21110T C23280T A23403G G25563T C27964T C28846T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_492999
 2020-07-09 2020-07-20
 Latvia hCoV-19/Latvia/064/2020
 C241T C3037T C4570T C6781T C11455T G12243T C14408T G15751T T16254C T19839C A23403G GGG28881AAC C28905T

EPI_ISL_493000
 2020-07-09 2020-07-20
 Latvia hCoV-19/Latvia/065/2020
 C241T A1558G C3037T T3289C C13860T C14408T A23403G GGG28881AAC

EPI_ISL_493609
 2020-07-09 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112CD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497795
 2020-07-09 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497814
 2020-07-09 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497862
 2020-07-09 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498061
 2020-07-09 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C10376T T12503C C14408T A23403G G25770T GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_498065
 2020-07-09 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C6027T T12503C C14408T C16490T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498066
 2020-07-09 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0497/2020
 C241T C3037T C10376T T12503C C14408T C16490T A23403G G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_498115
 2020-07-09 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T9508C C12415T C14408T T15930C A21137G C22675T A23403G G23868T G24794T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_498116
 2020-07-09 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6762T A9439G T12503C C14408T A23403G G25770T GGG28881AAC C29721T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_498119
 2020-07-09 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0581/2020
 A1- C241T C3037T A7064G C13059T C14408T C22675T A23403G T25485C T27384C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498120
 2020-07-09 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0582/2020
 ATTAAAGGTTT1- C241T C3037T T9508C C12415T C14408T T15930C A21137G C22675T A23403G G23868T G24794T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_498121
 2020-07-09 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T T9508C C12415T C14408T T15930C A21137G C22675T A23403G G23868T G24794T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_498125
 2020-07-09 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0587/2020
 ATTAAAG1- C241T C3037T T9508C C12415T C14408T T15930C A21137G C22675T A23403G G24794T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_498582
 2020-07-09 2020-07-27
 Singapore hCoV-19/Singapore/684/2020
 ATTAAAGGTTTA1- C6310A C6312A G11083T C13730T C19524T T22270C C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_498585
 2020-07-09 2020-07-27
 Singapore hCoV-19/Singapore/687/2020
 ATTAAAGGTTTATACCT1- C6310A C6312A G11083T C13730T C19524T T22270C C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_500593
 2020-07-09 2020-07-29
 Ireland hCoV-19/Ireland/71IRL17107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T C3037T C3602T C14408T C16762T A20675G A23403G G25563T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500910 LR862468
 2020-07-09 2020-07-30
 Switzerland 190049
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2905W A2952W C3037T T6910Y T6993Y T7035W G9130T C13584T G14055A C14408T C16111T A23403G G26774T T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500911 LR862464
 2020-07-09 2020-07-30
 Switzerland 190050
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2938R C3037T T3106C T3616Y C4002T G5950K G10097R G10271K A10302R C13536T C14408T T17675Y G19732T G22104K A23403G C23731T GGG28881AAC A29507R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500912 LR862477
 2020-07-09 2020-07-30
 Switzerland 190051
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T C3037T T3095C T3144K C3602Y C9891Y G10265A C12880T C14408T A15972G A16210W C19718T A23403G C26527Y G28077T T28759C GGG28881AAC A28999W G29692K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500913 LR862475
 2020-07-09 2020-07-30
 Switzerland 190052
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6906Y A6939M C7006Y T7035W G9130T C13584T G14055A C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29616C G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500914 LR862474
 2020-07-09 2020-07-30
 Switzerland 190053
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3106C C4002T G5950K T7020Y C7843Y G10097R C13536T C14408T G19732T A23403G C23731T G25644K GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500916 LR862476
 2020-07-09 2020-07-30
 Switzerland 190055
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G5950K A6921W C6936Y A6944R T7014Y G10097R C13536T C14408T G19732T A23403G C23731T C24082Y C24621A GGG28881AAC A29776G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500919 LR862492
 2020-07-09 2020-07-30
 Switzerland 190058
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1170T A3010W C3037T C6968M C14408T G17193T G19117T C19170T G19509A A23403G T23485C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500921 LR862483
 2020-07-09 2020-07-30
 Switzerland 190060
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1034G G1312T C3037T G3947K A7004R G9130T C14408T C16111T A23403G C23940S T27319C C28391T G28487A C28868T GGG28881AAC G29543K G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500922 LR862486
 2020-07-09 2020-07-30
 Switzerland 190061
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T2912W A2920R C3037T C3587Y A3590R C5787T G10265A C14408T C15720T A15972G C17285T C19718T A23403G G26700T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500923 LR862491
 2020-07-09 2020-07-30
 Switzerland 190063
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2679G C3037T G11842A A12759G C14408T G18292T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500924 LR862481
 2020-07-09 2020-07-30
 Switzerland 190064
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G3182R C5787T G10265A C13577Y C14408T C15720T A15972G C17285T C19718T A23403G G26700T T28759C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_500925 LR862490
 2020-07-09 2020-07-30
 Switzerland 190065
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2110T C3037T G6443T G10265A C14408T C14621T C15720T A15972G C19718T C20483Y A23403G G26700T T28019C T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_501817
 2020-07-09 2020-07-31
 Latvia hCoV-19/Latvia/075/2020
 C241T C3037T C4570T C6781T C11455T C14408T G15751T T16254C T19839C A23403G GGG28881AAC C28905T

EPI_ISL_501929
 2020-07-09 2020-07-31
 Latvia hCoV-19/Latvia/086/2020
 C241T C3037T C11379T G13201A C14408T T15096C C21642T A23403G C24130T GGG28881AAC

EPI_ISL_501936
 2020-07-09 2020-07-31
 Latvia hCoV-19/Latvia/087/2020
 C241T A1202G C3037T C12513T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_507963
 2020-07-09 2020-08-03
 United States hCoV-19/USA/MN-MDH-1375/2020
 ATT1- C241T C1059T C3037T C3695T C5413T C6501T T9041G G14008A C14408T C17676T C22227T G22249T A23403G G25563T G28899T C29545T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_507964
 2020-07-09 2020-08-03
 United States hCoV-19/USA/MN-MDH-1376/2020
 ATTAAAGG1- C241T C1059T C3037T C3695T C5413T C6501T T9041G G14008A C14408T C17676T C22227T G22249T A23403G G25563T G28899T C29545T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_507965
 2020-07-09 2020-08-03
 United States hCoV-19/USA/MN-MDH-1377/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C3695T C5413T C6501T T9041G G14008A C14408T C17676T C22227T G22249T A23403G G25563T G28899T C29545T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_507967
 2020-07-09 2020-08-03
 United States hCoV-19/USA/MN-MDH-1379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3695T C5413T C6501T T9041G G14008A C14408T C17676T C22227T G22249T A23403G G25563T G28899T C29545T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_507970
 2020-07-09 2020-08-03
 United States hCoV-19/USA/MN-MDH-1382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3695T C5413T C6501T T9041G G14008A C14408T C17676T C22227T G22249T A23403G G25563T G28899T C29545T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_507971
 2020-07-09 2020-08-03
 United States hCoV-19/USA/MN-MDH-1383/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C3695T C5413T C6501T T9041G G14008A C14408T C17676T C22227T G22249T A23403G G25563T G28899T C29545T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_507972
 2020-07-09 2020-08-03
 United States hCoV-19/USA/MN-MDH-1384/2020
 ATTA1- C241T C1059T C3037T C3695T C5413T C6501T T9041G G14008A C14408T C17676T C22227T G22249T A23403G G25563T G28899T C29545T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509142
 2020-07-09 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2669T C3037T C14408T C18486T A20268G T22162C A23403G A26053G G27556T C28854T

EPI_ISL_509677 MT843753
 2020-07-09 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4196/2020
 G199A C241T C1059T C2925T C3037T G11083T C14408T G15128T C17002Y G17110T G18538T G22484K A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509678 MT843752
 2020-07-09 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4195/2020
 G199A C241T C1059T C2925T C3037T G6367R C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509684 MT843758
 2020-07-09 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4194/2020
 G199A C241T C1059T C2925T C3037T G11083T C14408T G15128T G17110T G18538T G22484K A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509815 MT846499
 2020-07-09 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T T13314C C14408T T19839C A23403G C23707T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509823 MT846507
 2020-07-09 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T C21431T A23403G G24199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509857 MT846541
 2020-07-09 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509861 MT846545
 2020-07-09 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509867 MT846553
 2020-07-09 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C1059T C1415T C1528T C3037T C10790T C14408T A15334G C17069T A23403G G25563T C26801T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509870 MT846556
 2020-07-09 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2094T C3037T A6716G G11596T C14408T A23403G C27213T G27708A GGG28881AAC G29781T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509871 MT846557
 2020-07-09 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4232T C9120T A13308G C14408T A19899T A21464G A23403G G25444A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509873
 2020-07-09 2020-08-05
 United States hCoV-19/USA/WI-UW-871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G654A A1982G C3037T G3871T T3931C C5672T C12025T C14408T G19677T A23403G C23707T G28027A C28977T GTACGATCGAGT29747- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509994
 2020-07-09 2020-08-05
 United States hCoV-19/USA/IA-UW-846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T C27370- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510452
 2020-07-09 2020-08-06
 Spain hCoV-19/Spain/COV006123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T T4923A C5784T C14408T A20268G C21846T T22297C A23403G C27982T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_512075 MT940477
 2020-07-09 2020-08-10
 India SARS-CoV-2/human/IND/GBRC338a/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G7042T C7764T C12616T C14408T C18877T G21795T A23403G G25563T C26735T G28881A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_512076 MT940478
 2020-07-09 2020-08-10
 India SARS-CoV-2/human/IND/GBRC338b/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C2836T C3037T G7042T C7764T C14408T C18877T A23403G C23997T G25563T C26735T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_512077 MT940479
 2020-07-09 2020-08-10
 India SARS-CoV-2/human/IND/GBRC339/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T T8149C C12616T A13785G C14408T C18877T C19610T G21372T G21795T A23403G C25517G G25563T C26735T G27240T ATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29815-

EPI_ISL_512242
 2020-07-09 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C2143T C3037T T6283C C7768T C11575T C14408T C15738T A20268G A23403G C28854T

EPI_ISL_512243
 2020-07-09 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1935/2020
 ATTAAAGGTTTATACC1- C241T C664T C2143T C3037T A6659G C7768T C11575T C14408T A20268G A23403G C28854T

EPI_ISL_512252
 2020-07-09 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2143T C3037T C7768T C11575T C14408T A20268G C21707T A23403G C25607T C25701T C28854T

EPI_ISL_512267
 2020-07-09 2020-08-11
 United States hCoV-19/USA/CA-ALSR-1967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1809G C2143T C3037T C7768T C11575T C14408T C18167T A20268G C21707T A23403G C25607T C28854T

EPI_ISL_512314
 2020-07-09 2020-08-11
 Latvia hCoV-19/Latvia/089/2020
 C241T C3037T G13201A C14408T T15096C C21642T A23403G C24130T GGG28881AAC

EPI_ISL_512348
 2020-07-09 2020-08-11
 United Kingdom hCoV-19/England/NORT-293950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512349
 2020-07-09 2020-08-11
 United Kingdom hCoV-19/England/NORT-29397E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512487
 2020-07-09 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G C25916Y G27877T A28523G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_514219 MT890352
 2020-07-09 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0873/2020
 AT1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514222 MT890355
 2020-07-09 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0876/2020
 ATTA1- C37T C241T C1059T C3037T C7173T C9967T G10902A G11596T C13994T C14408T A23403G C25546T G25563T C27964T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514435
 2020-07-09 2020-08-17
 India hCoV-19/India/GBRC337a/2020
 ATTA1- C241T C3037T C12616T C14408T C16323T C18877T G21795T A23403G G25563T GTTA26158- C26735T G28881A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514436
 2020-07-09 2020-08-17
 India hCoV-19/India/GBRC337b/2020
 ATTA1- C241T C3037T C12616T C14408T C16323T A17914C C18877T G21795T A23403G G25563T GTTA26158- C26735T G28881A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514437
 2020-07-09 2020-08-17
 India hCoV-19/India/GBRC340/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C12616T C14408T C18877T G21795T A23403G G25563T GTTA26158- C26735T G28881A AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_515041
 2020-07-09 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2639/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_515042
 2020-07-09 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2640/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T C11916T C14408T C15842T C16650T T18408C A20675T A23403G G25563T C25571T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_515043
 2020-07-09 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2641/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16393T C16650T A20675T A23403G C24133T G25563T G29179T G29779T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_515044
 2020-07-09 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2642/2020
 ATTAAAGG1- C241T C1059T C3037T C4320T C6628T G8179A C11916T C12919T C14408T C16650T C18928T A20675T A23403G G25563T C28054T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_515045
 2020-07-09 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2643/2020
 ATTAAAG1- C241T C1059T C3037T G3287T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_515080
 2020-07-09 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515582
 2020-07-09 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002183/2020
 A1- C241T C3037T C6762T T12503C C14408T C16887T G21641T A23403G G25455T G25770T G26116T GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515601
 2020-07-09 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002203/2020
 ATTA1- G174T C241T C3037T C9857T C11095T A13355G C14408T A23403G A23920G A26530G G27561T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515864
 2020-07-09 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C6762T T12503C T12965C C14408T A23403G G25770T GGG28881AAC C29721T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515869
 2020-07-09 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001385/2020
 ATTAAAGGTTT1- C241T C3037T C6762T T12503C C14408T A23403G G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515871
 2020-07-09 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C6762T T12503C C14408T A23403G G25770T GGG28881AAC C29721T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515873
 2020-07-09 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C6762T A9439G T12503C C14408T A23403G G25770T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_517847 MT966084
 2020-07-09 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0957/2020
 ATT1- C241T C1059T C3037T A4197G C8660T C14408T T16483C A23403G G25563T C28435T G29651T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_517849 MT966086
 2020-07-09 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0959/2020
 ATTAAAGGTTT1- C21T C37T C241T C1059T C3037T C6730T A8031G C9967T C14408T C19374T A23403G G25563T T26205C C27964T G29736A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_517850 MT966087
 2020-07-09 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C539T C1059T A1622G C2113T C3037T A3904G C11095T G13201T C14408T C14790T A23403G G25563T T28015C C29200T C29754T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_517852 MT966089
 2020-07-09 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0962/2020
 A1- C241T C2416T C3037T C9521T C14408T C16616T A23403G G25563T C26885T C27603T C28887T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_517854 MT966091
 2020-07-09 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T T22843C A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_518386 MT970360
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518486 MT971422
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518490 MT971426
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518507 MT971443
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_519017 MT972803
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519392 MT970174
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519397 MT970307
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T C15654T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519423 MT970356
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519424 MT970357
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519446 MT970379
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519459 MT970396
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C12085T G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_520012 MT971394
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520169 MT971390
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520172 MT971395
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_520276 MT972651
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520277 MT972652
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A8358G C14408T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520290 MT972665
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520302 MT972677
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28093T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520313 MT972688
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520329 MT972704
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6726T C7528T T7540C C12153T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520332 MT972707
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520333 MT972708
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520335 MT972711
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C25433T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520336 MT972712
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C25433T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520337 MT972713
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G21255C G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_520338 MT972714
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T G1462A C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520339 MT972715
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3593/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520340 MT972716
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C26873T C28629T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520341 MT972717
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T18843C C19217T G22992A G23401A A23403G GGG28881AAC G29348T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_520343 MT972719
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3597/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520344 MT972720
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520347 MT972723
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C T11028C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C25638T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520349 MT972725
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3604/2020
 ATTAAAGGTTTATACC1- C66T C241T A1163T C1454T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24621T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520351 MT972727
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520354 MT972730
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520360 MT972736
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3618/2020
 ATTAAAGG1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520361 MT972737
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520369 MT972709
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520386 MT972761
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C16173T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520387 MT972762
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520388 MT972763
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29027T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520534 MT970184
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17707T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520535 MT970186
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520538 MT970189
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520566 MT970166
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C25889T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520774 MT969708
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520776 MT969710
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520777 MT969711
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C A10786G C14408T G16647T C18555T G22104T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520778 MT969712
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520779 MT969706
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C G14229T C14408T G16647T C17850T C18555T G22992A C23123T G23401A A23403G C24759T C25638T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520780 MT969713
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A5887G T7540C C14408T G16647T C18555T G22992A G23401A A23403G T25556G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520781 MT969714
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_520862 MT969851
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520930 MT969854
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18267T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520931 MT969855
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3251/2020
 AT1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520932 MT969856
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3252/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520948 MT970009
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520970 MT969915
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C26882T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520994 MT969870
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3315/2020
 ATTAAAGGTTTATACCT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_520998 MT969877
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_521002 MT969881
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3323/2020
 ATTA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521003 MT969882
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3324/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521009 MT969892
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3330/2020
 ATTAAAGGTT1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521012 MT969897
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7600T G7798T G11029T C14408T A23403G T23548C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521013 MT969898
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T T7540C C12406T C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G T26497C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521049 MT969950
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G G28314T GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521063 MT969968
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521070 MT969975
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3391/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521073 MT969978
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521085 MT969994
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3406/2020
 ATTAAA1- C241T A1163T C3037T T7540C C9286T C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521749 MT969726
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521766 MT969746
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521769 MT969745
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2938/2020
 AT1- G204T C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29160T

EPI_ISL_521804 MT969799
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C11003T C14408T G16647T C18555T A19892G C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521806 MT969747
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C26305T GGG28881AAC

EPI_ISL_521807 MT969748
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521808 MT969749
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521809 MT969750
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2979/2020
 ATTAAAGGTTTATAC1- C21T C241T A1163T C3037T G4559A T7540C C14408T C16111T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_523052
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-20-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T G2891A C3037T G3251T C7528T G11083T G14274A C14408T A23403G A24862G C25936T C26013T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_523053
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-20-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T A2493T C3037T G3251T G14274A C14408T C17172T A23403G A24862G C25936T C26013T G28395T C28869A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523054
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-20-21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T G2891A C3037T G3251T C7528T G11083T G14274A C14408T A23403G A24862G C25936T C26013T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523055
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-20-23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T A2493T C3037T G3251T G14274A C14408T C17172T A23403G A24862G C25936T C26013T G28395T C28869A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523056
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-20-27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T C7528T G11083T G14274A C14408T A23403G A24862G C25936T C26013T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523057
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-20-28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T C7528T G11083T G14274A C14408T A23403G A24862G C25936T C26013T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523058
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-20-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T C7528T G11083T G14274A C14408T A23403G A24862G C25936T C26013T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_523059
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-20-34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C1884T A2493T C3037T G3251T C13694T G14274A C14408T C17172T A23403G A24862G C25936T C26013T G28395T C28869A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523060
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-20-4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T C7528T G11083T G14274A C14408T A23403G A24862G C25936T C26013T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_523061
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-20-5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C1884T A2493T C3037T G3251T C13694T G14274A C14408T C17172T A23403G A24862G C25936T C26013T G28395T C28869A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523062
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-21-07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T AAT6506- G12795A G14274A C14408T A17008G G22346T A23403G A24862G C25936T C26013T C26895T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523063
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-21-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T AAT6506- G12795A G14274A C14408T A17008G G22346T A23403G A24862G C25936T C26013T C26895T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523064
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-21-14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T AAT6506- G12795A G14274A C14318T C14408T A17008G G22346T A23403G A24862G C25936T C26013T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523065
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-21-19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T AAT6506- G12795A G14274A C14408T A17008G G22346T A23403G A24862G C25936T C26013T G28233A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523066
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-21-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T AAT6506- G12795A G14274A C14318T C14408T A17008G G22346T A23403G A24862G C25936T C26013T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523067
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-21-20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T AAT6506- G12795A G14274A C14408T A17008G G22346T A23403G G24087A A24862G C25513T C25936T C26013T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523069
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-21-4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T AAT6506- G12795A G14274A C14408T A17008G G22346T A23403G A24862G C25936T C26013T G28233A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523071
 2020-07-09 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-21-5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T AAT6506- G12795A G14274A C14408T A17008G G22346T A23403G G24087A A24862G C25513T C25936T C26013T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523273
 2020-07-09 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2695T C3037T G5194T A5560G G10265A C14408T C15141T A15972G T19497C C19718T C21077T A23403G G26439T C26461T G28077T T28759C GGG28881AAC C29149T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523348
 2020-07-09 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523351
 2020-07-09 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T GTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29828-

EPI_ISL_524732
 2020-07-09 2020-08-28
 India hCoV-19/India/GJ-GBRC-375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C7764T G7798T C12616T C14408T C18877T G21795T A23403G G25563T C26735T G28881A GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524881
 2020-07-09 2020-08-28
 United States hCoV-19/USA/MD-MDH-0153/2020
 AT1- C241T C1059T C3037T C8228T C11916T G13897T C14408T G22201T A23403G C23525T G23580T G25563T T29492C

EPI_ISL_524882
 2020-07-09 2020-08-28
 United States hCoV-19/USA/MD-MDH-0154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C8228T C11916T G13897T C14408T G22201T A23403G C23525T G23580T G25563T T29492C TG29867GC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_525719
 2020-07-09 2020-09-01
 United States hCoV-19/USA/WA-S2729/2020
 ATT1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T C28657T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525962
 2020-07-09 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C28854T C29274A

EPI_ISL_525963
 2020-07-09 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11824T C14408T A18259G G18397A A20268G A23403G C28854T C28887T

EPI_ISL_525964
 2020-07-09 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2884C C3037T G4285T C9778T C14408T A18121G A20268G A23403G C28854T C28887T

EPI_ISL_525965
 2020-07-09 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10793T C14408T C18877T A23403G A25076G G25563T G25660C C26192T G27613A

EPI_ISL_525966
 2020-07-09 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G T26717A C28854T C29274A

EPI_ISL_525967
 2020-07-09 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3452A C3992T G4510T C8311T C14408T C15933T T19839C A23403G T25451C GGG28881AAC

EPI_ISL_526847
 2020-07-09 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G5539A C8664A G8851A C14408T T22573C A23403G A25505C G28747T GGG28881AAC C29738T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_526849
 2020-07-09 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G4201T G5539A C8664A G8851A C14408T T22573C A23403G A25505C C26895T G28747T GGG28881AAC G29474T

EPI_ISL_526852
 2020-07-09 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0729/2020
 C241T C2773T C3037T G5539A C6286T C8664A G8851A C14408T T22573C A23403G A25505C G28747T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527753
 2020-07-09 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T54C C241T C3037T C6651T C9165T C14408T A20268G A23403G T25265A C29095T G29254T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_527754
 2020-07-09 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C2716T C3037T C7482T C14408T C17010T G22484T C23230T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529012
 2020-07-09 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE93935/2020
 T2Y A4T C241T C313T A2923G C3037T C6040Y C11124T G14118T C14408T G19816T C21017Y A23403G GGG28881AAC A29567G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_532581
 2020-07-09 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943B25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533032
 2020-07-09 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A7848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4832T C11289T C14408T T15051C A20255G A23403G C28657Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533099
 2020-07-09 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A5B7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7165T G10265A C14408T C15720T A15972G C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534700 MW000355
 2020-07-09 2020-09-14
 United States SARS-CoV-2/human/USA/MD-MDH-0140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T G4300T G5012T C14408T C19488T A23403G G25563T C27493T T28843G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_534701 MW000356
 2020-07-09 2020-09-14
 United States SARS-CoV-2/human/USA/MD-MDH-0141/2020
 C241T C1059T C3037T G4300T G5012T C14408T C19488T A23403G G25563T C27493T T28843G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_534702 MW000357
 2020-07-09 2020-09-14
 United States SARS-CoV-2/human/USA/MD-MDH-0142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C475T T1592C C3037T C7083T C14408T C18877T A23040T A23403G G25563T G29422T G29474T

EPI_ISL_534703 MW000358
 2020-07-09 2020-09-14
 United States SARS-CoV-2/human/USA/MD-MDH-0143/2020
 A1- C241T C475T T1592C C3037T C7083T C14408T C18877T C20436T A23040T A23403G G25563T G29422T G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535655 MW001882
 2020-07-09 2020-09-15
 United States SARS-CoV-2/human/USA/AR-CDC-0852/2020
 G199A C241T C1059T C2925T C3037T G11083T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_540444
 2020-07-09 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T G25266T GGG28881AAC G29764A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541250
 2020-07-09 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1312/2020
 ATTAA1- C241T C3037T G4511A C10376T T13339C C14391T C14408T C17119G C18252T C21575T A23403G C23929T T24995C GGG28881AAC CCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29802-

EPI_ISL_547580
 2020-07-09 2020-09-24
 Brazil hCoV-19/Brazil/SP-418/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25C C241T C3037T A3121C C3903T G4160T C6027T C7011T C14408T A18902G A23403G T27299C GGG28881AAC T29148C G29383T GG29861AA G29864A AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_565484
 2020-07-09 2020-09-30
 Australia hCoV-19/Australia/VIC9285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565498
 2020-07-09 2020-09-30
 Australia hCoV-19/Australia/VIC9306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_569005
 2020-07-09 2020-10-02
 France hCoV-19/France/IHU-0953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C593T C3037T A7710G C14408T C15407T G17259T A20268G G21624T A23403G G23587T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT937816
 2020-07-09 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0153/2020
 AT1- C241T C1059T C3037T C8228T C11916T G13897T C14408T G22201T A23403G C23525T G23580T G25563T T29492C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MT937817
 2020-07-09 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C8228T C11916T G13897T C14408T G22201T A23403G C23525T G23580T G25563T T29492C TG29867GC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

MT947573
 2020-07-09 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2729/2020
 ATT1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T C28657T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT955174
 2020-07-09 2020-08-29
 Tunisia SARS-CoV-2/human/TUN/TUN_ADAGE_5004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T C1059T C3037T C8389T C10582T G11083T C13517T G13858T C14408T G15372T C16049Y C20759T A23403G G23593T T24309Y G25563T G26775T C27804T C28830A

MT965767
 2020-07-09 2020-09-04
 India SARS-CoV-2/human/IND/GBRC-375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T C7764T G7798T C12616T C14408T C18877T G21795T A23403G G25563T C26735T G28881A GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT969709
 2020-07-09 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3068/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MW012278
 2020-07-09 2020-09-17
 Serbia SARS-CoV-2/human/SRB/NP54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T G10265A C14408T C15720T A15972G C19718T A23403G G25555T G26700T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW023511
 2020-07-09 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1312/2020
 ATTAA1- C241T C3037T G4511A C10376T T13339C C14391T C14408T C17119G C18252T C21575T A23403G C23929T T24995C GGG28881AAC CCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29802-

EPI_ISL_486666
 2020-07-10 2020-07-10
 India hCoV-19/India/InStem_NCBS_0085/2020
 ATT1- A5G G7T T10G ACCTTCCCAGGTAACA14- CCA32GAG CA37AG C241T C3037T C3634T A4860G C14408T C15324T T15849A C20429T A23403G G25690T G25996T G27561T G28809T A29852CT CT29854TC GGAGA29861TACAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868C

EPI_ISL_486667
 2020-07-10 2020-07-10
 India hCoV-19/India/InStem_NCBS_0091/2020
 ATT1- A5G G7T T10G ACCTTCCCAGGTAACA14- CCA32GAG CA37AG C241T C313T C3037T T3478C C5700A A10323G C14408T C16985T A23403G C24651T G28001T GGG28881AAC -CT29853CTTC GGAGA29861TACAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868C

EPI_ISL_486668
 2020-07-10 2020-07-10
 India hCoV-19/India/InStem_NCBS_0093/2020
 A1GGGTCA A4C GGTTT7TCCAG T13- C15A C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC AGAATGACA29863CTGTCTCTT A29873T A29875C AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_486669
 2020-07-10 2020-07-10
 India hCoV-19/India/InStem_NCBS_0094/2020
 ATT1CCAGACA AAGGT5GGAAC T11G AC14TA T17A C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC -29856TCTGTC GGAGA29861TACAC GA29868CT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871CG

EPI_ISL_486670
 2020-07-10 2020-07-10
 India hCoV-19/India/InStem_NCBS_0095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1218T C3037T C8917T C14408T G17539T A23403G C27110T T27384C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_486671
 2020-07-10 2020-07-10
 India hCoV-19/India/InStem_NCBS_0096/2020
 ATT1- A5G G7T T10G ACCTTCCCAGGTAACA14- CCA32GAG CA37AG C241T C1218T C3037T T6372C C8917T C14408T A23403G C27110T T27384C C28253T GGG28881AAC G29779T A29852CT CT29854TC GGAGA29861TACAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868C

EPI_ISL_486672
 2020-07-10 2020-07-10
 India hCoV-19/India/InStem_NCBS_0098/2020
 ATT1- A5G G7T T10G ACCTTCCCAGGTAACA14- CCA32GAG CA37AG C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC -29859CC G29861A GAA29864AGC GAC29868ATT AA29875TC A29878C AAAAAAAAAAAAAAAAAAAAAAAA29880TGGGG

EPI_ISL_493606
 2020-07-10 2020-07-21
 United Kingdom hCoV-19/England/NOTT-112C9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9643C C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493716
 2020-07-10 2020-07-21
 United Kingdom hCoV-19/England/SHEF-CDC83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497776
 2020-07-10 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497780
 2020-07-10 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497793
 2020-07-10 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497807
 2020-07-10 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497816
 2020-07-10 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C26622T C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497822
 2020-07-10 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497825
 2020-07-10 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497863
 2020-07-10 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498067
 2020-07-10 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G520A C1471T C1601T C3037T G3085T A4564G C9857T C14408T A23403G G27561T C28826T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_499388
 2020-07-10 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16907D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C815T C3037T T3049C C14408T G21624T A23403G G27877T T28098Y GGG28881AAC

EPI_ISL_499432
 2020-07-10 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169338/2020
 ATTAAAGGTTTAT1- C241T A489G C2037T C3037T T5465C G6387A C7423T C8043T T9657C C14408T G21624T A23403G G24102A AA25800TT GGG28881AAC

EPI_ISL_499441
 2020-07-10 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T T20739Y G21624T A23403G G27877T A28523G GGG28881AAC AAAA29900-

EPI_ISL_499458
 2020-07-10 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-16958D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C9165T C14408T G19083T G21624T A23403G G27877T GGG28881AAC

EPI_ISL_500595
 2020-07-10 2020-07-29
 Ireland hCoV-19/Ireland/71IRL24965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8882G A10323G C14408T C18877T C22444T A23403G G25563T C26735T C28854T G29239A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500711
 2020-07-10 2020-07-29
 United Kingdom hCoV-19/England/203020505/2020
 AT1- C241T C3037T C6638T C7165T G10265A C14408T C15720T A15972G C19718T G19735T G22381A C22452Y A23403G C24795T G26700T T28759C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_500792
 2020-07-10 2020-07-29
 Norway hCoV-19/Norway/2873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3055C C6027T T13626G C14408T A16734G A20268G A23403G G24794T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500794
 2020-07-10 2020-07-29
 Norway hCoV-19/Norway/2875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G611A A1202G T1877C C2485T C3037T C14408T C18877T A23403G G25563T C25710T G27147T G28178T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501284
 2020-07-10 2020-07-31
 Latvia hCoV-19/Latvia/068/2020
 C241T A1558G C3037T T3289C C13860T C14408T A23403G GGG28881AAC

EPI_ISL_501285
 2020-07-10 2020-07-31
 Latvia hCoV-19/Latvia/069/2020
 C241T C3037T C4570T C6781T C11455T C14408T G15751T T16254C T19839C A23403G GGG28881AAC C28905T

EPI_ISL_501288
 2020-07-10 2020-07-31
 Latvia hCoV-19/Latvia/072/2020
 C241T A1202G C3037T C12513T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_501289
 2020-07-10 2020-07-31
 Latvia hCoV-19/Latvia/073/2020
 C241T C3037T C4570T C5832T C6781T C11455T C14408T G15751T T16254C T19839C A23403G GGG28881AAC C28905T

EPI_ISL_507966
 2020-07-10 2020-08-03
 United States hCoV-19/USA/MN-MDH-1378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3695T C5413T C6501T T9041G G14008A C14408T C17676T C22227T G22249T A23403G G25563T G28899T C29545T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_507968
 2020-07-10 2020-08-03
 United States hCoV-19/USA/MN-MDH-1380/2020
 ATTAAAGGTT1- C241T C1059T C3037T C3695T C5413T C6501T T9041G G14008A C14408T C17676T C22227T G22249T A23403G G25563T G28899T C29545T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509143
 2020-07-10 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8818T C14408T C15952T G18337T G20980A C21789T A23403G TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509144
 2020-07-10 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7798T T11134C C14408T A18535G C19011T A23403G G25819A C26681T T27499C GGG28881AAC TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509145
 2020-07-10 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10793T C12880T T13569C C14408T C16394T C18877T C21811G A23403G A25076G G25563T G25660C C26192T G27613A G29477T

EPI_ISL_509146
 2020-07-10 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1927C C3037T C10319T C14408T C14576T A18424G C21304T C21575T A22255T A23403G G25563T G25907T C27964T C28472T C28869T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509147
 2020-07-10 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10793T C14408T C18877T A23403G A25076G G25563T G25660C C26192T G27613A TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509148
 2020-07-10 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1927C C3037T T5290C C8318A C10319T C14408T G16365T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T

EPI_ISL_509149
 2020-07-10 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1385T G1738T C3037T C11916T C13536T C14408T A23403G G25563T C28087T G29332T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509150
 2020-07-10 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1123T C3037T C14408T A20268G A23403G C28854T C29274A TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509151
 2020-07-10 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5183T A9162G C12357T C14408T C18377T C21575T G21586T T22276C A23403G C25587T GGG28881AAC AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509153
 2020-07-10 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1385T G1738T C3037T C11916T C13536T C14408T A23403G G25563T C28087T G29332T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509229
 2020-07-10 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000573/2020
 AT1- C241T C3037T T12503C C14408T A23403G G25770T GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_509235
 2020-07-10 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000579/2020
 ATTAAAGGTTTAT1- C241T C3037T C4002T G10097A C13536T C14408T C18747T A23403G C23731T GGG28881AAC G29425T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509292
 2020-07-10 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000643/2020
 ATTA1- C241T C3037T C4002T G10097A C13536T C14408T C18747T A23403G C23731T GGG28881AAC G29425T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509342
 2020-07-10 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001091/2020
 A1- C241T C3037T C6762T A9439G T12503C C14408T T22016C A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509344
 2020-07-10 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001093/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C4002T G10097A C13536T C14408T C18747T A23403G C23731T GGG28881AAC G29425T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509347
 2020-07-10 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001098/2020
 A1- C140T C241T C3037T C14408T A18082G A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_509349
 2020-07-10 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C140T C241T C3037T C14408T A18082G A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_509350
 2020-07-10 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001101/2020
 C241T C3037T C4002T G10097A C13536T C14408T G18516T C18747T A23403G C23731T GGG28881AAC G29425T AAAAA29899-

EPI_ISL_509351
 2020-07-10 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001102/2020
 A1- C241T C3037T C4002T G10097A C13536T C14408T C18747T A23403G C23731T GGG28881AAC G29425T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509354
 2020-07-10 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001105/2020
 A1- C241T C3037T T12503C C14408T C22712T A23403G A23534G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509664 MT843755
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4201/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T C25624Y G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509666 MT843756
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4202/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509668 MT843754
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4198/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509685 MT843759
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/AR-CDC-4204/2020
 T11C G199A C241T C1059T G1126S G2441R C2925T C3037T A5957W C14408T G15128T G17110T G18538T A23403G G25563T G26690T G26763S AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509886 MT846572
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509894 MT846580
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509906 MT846592
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G1957T C3037T C11916T C14408T A23403G A23586G G25563T G26918T ACGATCG29749- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509908 MT846594
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4232T C9120T C14408T A19899T A21464G A23403G G25444A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509910 MT846596
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C25276T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509911 MT846597
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T C14697T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509912 MT846598
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3841T A6512C C14408T C15251T C18877T C19264T A23403G G25563T A29406C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509914 MT846600
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9050T G11083T C14408T C14599T C14724T G15732T C16338T T19143C A20268G G22918T A23403G C25350T G25776T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509915 MT846601
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-914/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T C19151T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509916 MT846602
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C11575T C14408T G19677T A23403G C25276T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509919 MT846605
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509924 MT846611
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509926 MT846613
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9050T G9802T G11083T C14408T C14599T C14724T G15732T C16338T T19143C A20268G G22918T A23403G C25350T G25776T C26131T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509928 MT846615
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509929 MT846616
 2020-07-10 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1758T C3037T C3411T C5183T C12534T C14408T A22320G A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509995
 2020-07-10 2020-08-05
 United States hCoV-19/USA/IL-UW-901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1385T G1738T C3037T G3242A -10387T C11916T C14408T A23403G G25563T C28087T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510454
 2020-07-10 2020-08-06
 Spain hCoV-19/Spain/COV006126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5784T C14408T A20268G TTA21991- T22297C A23403G C27982T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510456
 2020-07-10 2020-08-06
 Spain hCoV-19/Spain/COV006130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T C5784T C14408T A20268G T22297C A23403G T24022C C27982T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_510690 LR882155
 2020-07-10 2020-08-07
 Switzerland 200000
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2936R G3004K A3027W C3037T A3116W T3144K G10265A C14408T C15720T A15972G T17675Y C19718T A21323G A23403G G26700T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510691 LR882152
 2020-07-10 2020-08-07
 Switzerland 200001
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10265A C14408T C15720T A15972G C19718T C20233Y A21323G A23403G G26700T T28759C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510692 LR882153
 2020-07-10 2020-08-07
 Switzerland 200002
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2570T C3037T C6578T G10631A C12559T C14408T C15324T G20580K A23403G G24086K C27765T C28893T A29406R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510693 LR882154
 2020-07-10 2020-08-07
 Switzerland 200003
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G5950K G10097R C13536T C14408T G19732T A23403G C23731T C25714G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510694 LR882151
 2020-07-10 2020-08-07
 Switzerland 200004
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T A6912W A7742G C9286T C14408T C18348Y C19763T A23403G C24748T C26198Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510695 LR882158
 2020-07-10 2020-08-07
 Switzerland 200005
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1439T T2959K C3037T AA3132MM T3756W T9697C T10495C G10618A A12875G C14322T C14408T C15738T T17137Y T17675Y A20268G A23403G G25785T G26918K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510696 LR882157
 2020-07-10 2020-08-07
 Switzerland 200006
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A642M T856Y G1001R T1831W T1863Y A2905W T2989W C3037T T3055Y A3075R T3144K A3417W G3871K C4002Y T5059Y T5218K G5950K G6210K G6323R A6798R T6800W G6802K T6918W A9889R G10097R A10302R C10350M G11113R C13536Y C14408T T14883Y A16210W C17165M C19524Y C19604Y G19732T G20160R G20808K G20931K GG21122RS A23403G C23731T C24795M A27309M C27937Y G28001K G28287K GGG28881AAC C29259M TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510730 LR882188
 2020-07-10 2020-08-07
 Switzerland 200045
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C10833T C14408T C15324T C15654T C19185T A23403G T23443Y G28747T G28917T C29144T G29543T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510731 LR882195
 2020-07-10 2020-08-07
 Switzerland 200046
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C6633T C9286T C14178T C14408T C16694Y C19763T A23403G GGG28881AAC C29750T C29835T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510732 LR882190
 2020-07-10 2020-08-07
 Switzerland 200047
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2618R C3037T C4002T G5539R G5950K T6932Y G10097R C13536T C14408T G19732T A23403G C23731T C24082Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510733 LR882181
 2020-07-10 2020-08-07
 Switzerland 200048
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G5950K G7042K G10097R C13536T C14408T G19732T A23403G C23731T C24082Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510734 LR882186
 2020-07-10 2020-08-07
 Switzerland 200049
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T G9130T C14408T C16111T T21075W A23403G T27319C G28487A C28868T GGG28881AAC C28961Y G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512616
 2020-07-10 2020-08-11
 Ukraine hCoV-19/Ukraine/203100337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C3373A C4780T T6658C C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_512617
 2020-07-10 2020-08-11
 Ukraine hCoV-19/Ukraine/203100338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2062T C3037T C3587T T4007C C14408T G22014T A23403G GGG28881AAC AAAAAAAAAAA29893-

EPI_ISL_515046
 2020-07-10 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2644/2020
 ATTAAAG1- C241T C1059T C3037T G8179A C11916T C14408T C16650T C18928T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_515047
 2020-07-10 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2645/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T T5980C C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_515048
 2020-07-10 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2646/2020
 ATTAAAGGTTTATACC1- C241T C1059T T1789A C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_515058
 2020-07-10 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515065
 2020-07-10 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515081
 2020-07-10 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4052A C10029T C10449T C14408T C19718T T19839C C21646T A23403G C26846T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515172
 2020-07-10 2020-08-18
 South Africa hCoV-19/South Africa/LR00045/2020
 ATT1- C241T C3037T C4002T C4824A T8328G G9220A G10097A G11083T C13536T C14408T C18747T A23403G C23731T GTT26155- GGG28881AAC G29425T

EPI_ISL_515721
 2020-07-10 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T12503C C14408T C16490T T22822C A23403G C25047T C25416T G25770T GGG28881AAC C29721T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_515825
 2020-07-10 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001340/2020
 ATT1- C241T C3037T C10815T G11083T T12503C C14408T C20233T G22708A A23403G G25770T GGG28881AAC C29721T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_515826
 2020-07-10 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C8480T T9508C C14408T C22675T A23403G G23868T G24794T C25350T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515827
 2020-07-10 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001342/2020
 ATTAAAGGTTTATAC1- C241T C3037T C8480T T9508C C14408T C22675T A23403G G23868T G24794T C25350T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515828
 2020-07-10 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001343/2020
 A1- C241T C3037T C8480T T9508C C14408T C22675T A23403G G23868T G24794T C25350T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_517552
 2020-07-10 2020-08-24
 United Kingdom hCoV-19/England/SHEF-C585A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C14408T C21637T A23403G G24368T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517814 MT966179
 2020-07-10 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0924/2020
 ATTAAAGGTTTA1- C241T G431T C1059T C1385T G1738T C3037T G3242A C7318T C11916T C14408T A23403G A24010G G25563T C28087T C28292A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_517815 MT966180
 2020-07-10 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0925/2020
 ATTA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C21306T A23403G G25563T G26690T C28087T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_517816 MT966181
 2020-07-10 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C21306T A23403G G25563T G26690T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_517817 MT966183
 2020-07-10 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0927/2020
 ATTA1- C176T C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C21306T A23403G G25563T G26690T C28087T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_517857 MT966094
 2020-07-10 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0967/2020
 ATTAAA1- T13C C241T C1059T C3037T C14408T G18186T T19197C G20102T G20397T G20489T C22564T A23403G T23815G G25563T C25777T C29614T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_517858 MT966095
 2020-07-10 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0968/2020
 ATTA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T A23403G G25563T C28087T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_517859 MT966096
 2020-07-10 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0969/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G7393T C10188T C14408T C17745T C18946T A23403G T24982C G25563T A26231C T27531C T27901C C27964T G28077C C29149T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518487 MT971423
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518488 MT971424
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518508 MT971444
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518788 MT971844
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518790 MT971846
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_519023 MT972808
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519025 MT972809
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519027 MT972811
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4246T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519028 MT972812
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C25889T GGG28881AAC

EPI_ISL_519092 MT970891
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G11083T C14408T G16647T A17337G C18555T C22858T G22992A G23401A A23403G -25700CCC GGG28881AAC

EPI_ISL_519337 MT970654
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519338 MT970658
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519358 MT970291
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G T25722C GGG28881AAC

EPI_ISL_519361 MT970294
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519362 MT970295
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C16173T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519365 MT970298
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519367 MT970300
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T

EPI_ISL_519386 MT970078
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A12316G C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519390 MT970082
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A23539C T27785C GGG28881AAC

EPI_ISL_519395 MT970305
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4009/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C A14348G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519398 MT970308
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4012/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28826T GGG28881AAC

EPI_ISL_519399 MT970309
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4013/2020
 ATTAAAGGTTTAT1- C241T A1163T C3037T T4087G T7540C T10520C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519400 MT970310
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A T23017G G23401A A23403G C23895T GGG28881AAC

EPI_ISL_519402 MT970314
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23895T G27541T GGG28881AAC

EPI_ISL_519405 MT970317
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4019/2020
 AT28881-G C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519406 MT970318
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4020/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_519408 MT970321
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4022/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519409 MT970322
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25771T GGG28881AAC

EPI_ISL_519410 MT970323
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4024/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519428 MT970362
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519433 MT970367
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C A10055G C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519436 MT970370
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519439 MT970373
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2113A C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519440 MT970374
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519449 MT970382
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C8832T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519507 MT970311
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519508 MT970313
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4136/2020
 ATTA1- C241T A1163T C3037T T7540C A14348G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519522 MT970185
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C6628T T7540C G14241T C14408T G16647T C18555T G22186A G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519601 MT970183
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21327T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519650 MT970653
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520011 MT971392
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5246/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520013 MT971400
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520014 MT971401
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520357 MT972733
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3614/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520358 MT972734
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3615/2020
 ATTAAAG1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520362 MT972738
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520363 MT972739
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520364 MT972740
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28909T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520365 MT972741
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520366 MT972742
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520367 MT972743
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3626/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520368 MT972744
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3627/2020
 AT1- C241T A1163T C3037T T7540C C12784T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_520515 MT970158
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_520536 MT970187
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_520539 MT970190
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3047T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520540 MT970191
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520550 MT970172
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520623 MT970195
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26873T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_520631 MT970163
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_520634 MT970181
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520782 MT969723
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520784 MT969725
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_520785 MT969752
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3078/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520786 MT969753
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520787 MT969754
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_520788 MT969751
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520844 MT969832
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520848 MT969836
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22487C G22992A G23401A A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_520851 MT969839
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520855 MT969844
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_520856 MT969845
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3150/2020
 ATTA1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520858 MT969847
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520859 MT969848
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520933 MT969857
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520945 MT970000
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_520949 MT970011
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520950 MT970012
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520966 MT969908
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23413T GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_520991 MT970007
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_521005 MT969884
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521081 MT969989
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3402/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_521096 MT970091
 2020-07-10 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_523464
 2020-07-10 2020-08-26
 Netherlands hCoV-19/Netherlands/OV-EMC-80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7016T C14408T C21621T A23403G G28090T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524897
 2020-07-10 2020-08-28
 United States hCoV-19/USA/MD-MDH-0133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C3141A C3811T A11847G C12025T G13930A C14408T C20946T A23403G G25563T C26625T C27999T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_524898
 2020-07-10 2020-08-28
 United States hCoV-19/USA/MD-MDH-0134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T A3278G C10507T T13527C C14408T C16260T A23403G G25563T C28821A T29859A G29862A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_524899
 2020-07-10 2020-08-28
 United States hCoV-19/USA/MD-MDH-0136/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T A3278G C10507T T13527C C14408T C16260T A23403G G25563T C28821A G29868T C29870T A29893G

EPI_ISL_524900
 2020-07-10 2020-08-28
 United States hCoV-19/USA/MD-MDH-0137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T A642G C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_524901
 2020-07-10 2020-08-28
 United States hCoV-19/USA/MD-MDH-0138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C106T C241T C1059T T1334A C1625T C3037T C10319T C14408T G16710T G20176T C22323T A23403G T24376C A25121T G25563T C26013T C27964T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_527657
 2020-07-10 2020-09-04
 United States hCoV-19/USA/AR-CDC-6567/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527756
 2020-07-10 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0088/2020
 ATTAAA1- C241T C478T C1059T C2716T C3037T C3267A G11083T C12115T T12670C C14408T C17010T C18060T A23403G G25563T C29541T AATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29818-

EPI_ISL_527757
 2020-07-10 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C823T C3037T G3892A C5884T G8572T C10340T G10360A C14408T G22793T A23403G C24912T C28706T GGG28881AAC C29144T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_529013
 2020-07-10 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE94745/2020
 TTA2YWT C241T C2841Y C3037T C4002T G10097A C11379Y C12534T C13536T C14408T C17766T C21597T T22016C A23403G G23593T C23731T GGG28881AAC G28908T C29095T AAAAAAAAAAAA29892-

EPI_ISL_530250
 2020-07-10 2020-09-11
 Australia hCoV-19/Australia/QLD990/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C335T G1598A G2288T C3037T G13348A T13602C C14408T C18877T G19962T C20199T G20683T A23403G G25563T C26139T C26735T T27634C G28975T

EPI_ISL_530251
 2020-07-10 2020-09-11
 Australia hCoV-19/Australia/QLD991/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C335T G1598A G2288T C3037T G13348A T13602C C14408T C18877T G19962T C20199T G20683T A23403G G25563T C26139T C26735T T27634C G28975T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_533104
 2020-07-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A1EC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18315A C19698T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533150
 2020-07-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A6ACB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18315A C19698T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534699 MW000354
 2020-07-10 2020-09-14
 United States SARS-CoV-2/human/USA/MD-MDH-0135/2020
 ATTAA1- C241T C1059T C3037T A3278G C10507T T13527C C14408T C16260T A23403G G25563T C28821A T29856C T29859A G29862A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_535656 MW001883
 2020-07-10 2020-09-15
 United States SARS-CoV-2/human/USA/AR-CDC-0863/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_540445
 2020-07-10 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C19524T A23403G C23731T G25266T T27384C GGG28881AAC G29764A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541668
 2020-07-10 2020-09-21
 United States hCoV-19/USA/SC-DHEC-1092/2020
 ATTAAAGGTTTAT1- C241T C619T C1059T C3037T C6628T C9924T C14408T A14912G C15407T G25563T G26101T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_541670
 2020-07-10 2020-09-21
 United States hCoV-19/USA/SC-DHEC-1095/2020
 AT1- C241T C745T C2509T C3037T A3722G G11417T C14408T T16521C C18086T G18213T A20268G C21191T A23403G C28854T C29514T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547607
 2020-07-10 2020-09-24
 United States hCoV-19/USA/IA-GMF-10147/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C2061T C3037T C14408T A23403G A25048T G25563T C26625T C29614T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548139
 2020-07-10 2020-09-25
 New Zealand hCoV-19/New Zealand/CAN-ESR-20VR3804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10792C C14408T T19839C A23403G C27513T GGG28881AAC C28905T G29465T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548272
 2020-07-10 2020-09-26
 United States hCoV-19/USA/CA-CZB-3333/2020
 ATTAAAGGTTT1- C241T C3037T C8326Y A13636T C14408T G15594T C16480A G16843T C16915T G19009T A20268G A23403G G24197T T24211Y A25253G G25720T C28854T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_548276
 2020-07-10 2020-09-26
 United States hCoV-19/USA/CA-CZB-3332/2020
 ATTAAA1- T209W C241T C3037T G11083T C11109T C14408T C19983T G21255C A23403G GGG28881AAC G28960T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548317
 2020-07-10 2020-09-26
 United States hCoV-19/USA/CA-CZB-3335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACA1- G237T C241T C936T T2884Y C3037T T5293A C14408T C16386T G22484C A23403G A27388G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_557906
 2020-07-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-6B8C3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564683
 2020-07-10 2020-09-30
 Australia hCoV-19/Australia/VIC7829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_566062
 2020-07-10 2020-10-01
 United Kingdom hCoV-19/England/202890228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C335T C3037T T5507A GT5743SY G11083T C14408T G15906T A20268G C21614T A23403G C28854T AAAAAAA29897-

EPI_ISL_569614
 2020-07-10 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C11050T C14408T A23403G C24904T T27484C G27708A GGG28881AAC A29056G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MT919779
 2020-07-10 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-4650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3938C C5575T C14408T A19767G A23403G GGG28881AAC G28908T A29735G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MT919780
 2020-07-10 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-4792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2973T C3037T C3411T C10138T C14408T C20312T C21597T A23403G C28308G GGG28881AAC CTCCTGCTAGAATGGCTGGCA28890- C29144T

MT937321
 2020-07-10 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T T10153C C13487T C14408T C16260T C18652T C19488T C19862T A23403G G25563T G26690T C28821A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT937322
 2020-07-10 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C3141A C3811T A11847G C12025T G13930A C14408T C20946T A23403G G25563T C26625T C27999T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

MT937323
 2020-07-10 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T A3278G C10507T T13527C C14408T C16260T A23403G G25563T C28821A T29859A G29862A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT937324
 2020-07-10 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0136/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T A3278G C10507T T13527C C14408T C16260T A23403G G25563T C28821A G29868T C29870T A29893G

MT937325
 2020-07-10 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T A642G C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

MT937326
 2020-07-10 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C106T C241T C1059T T1334A C1625T C3037T C10319T C14408T G16710T G20176T C22323T A23403G T24376C A25121T G25563T C26013T C27964T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT968063
 2020-07-10 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-6567/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MW021459
 2020-07-10 2020-09-21
 United States SARS-CoV-2/human/USA/COVID20-1092/2020
 ATTAAAGGTTTAT1- C241T C619T C1059T C3037T C6628T C9924T C14408T A14912G C15407T G25563T G26101T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MW021461
 2020-07-10 2020-09-21
 United States SARS-CoV-2/human/USA/COVID20-1095/2020
 AT1- C241T C745T C2509T C3037T A3722G G11417T C14408T T16521C C18086T G18213T A20268G C21191T A23403G C28854T C29514T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MW042923
 2020-07-10 2020-09-28
 United States SARS-CoV-2/human/USA/COVID20-1096/2020
 ATT1- C241T C745T C2509T C3037T A3722G G11417T C14408T T16521C C18086T G18213T A20268G C21191T A23403G C28854T C29514T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MW042925
 2020-07-10 2020-09-28
 United States SARS-CoV-2/human/USA/COVID20-1098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10376T T13339C C14408T G19525A A23403G G25217T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_486835
 2020-07-11 2020-07-11
 India hCoV-19/India/InStem_NCBS_0086/2020
 AT1TG AC27GT A30T CC32AG AC35GA A39G C241T C313T C3037T C5700A C14408T A23403G C26447T GGG28881AAC CCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCT29738- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_486836
 2020-07-11 2020-07-11
 India hCoV-19/India/InStem_NCBS_0087/2020
 AT1TG AC27GT A30T CC32AG AC35GA A39G C241T C882A C3037T C3634T C6696T G9805T C14408T C15324T G21850T A23403G A25097G A29567G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_486837
 2020-07-11 2020-07-11
 India hCoV-19/India/InStem_NCBS_0088/2020
 AT1TG AC27GT A30T CC32AG AC35GA A39G C241T C3037T C14408T A19352G A23403G C23520T GGG28881AAC G29744A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_486838
 2020-07-11 2020-07-11
 India hCoV-19/India/InStem_NCBS_0089/2020
 AT1TG AC27GT A30T CC32AG AC35GA A39G C241T C3037T C3634T G11083T C11572T C14408T C15324T A20236T A23403G G24077T G25907T C26110T C27697T G29414T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_486839
 2020-07-11 2020-07-11
 India hCoV-19/India/InStem_NCBS_0090/2020
 AT1TG AC27GT A30T CC32AG AC35GA A39G C241T C313T G370T C3037T C5700A C10367T C14408T A23403G C26469A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_486840
 2020-07-11 2020-07-11
 India hCoV-19/India/InStem_NCBS_0092/2020
 AT1TG AC27GT A30T CC32AG AC35GA A39G C241T C1218T C3037T C8917T C14408T C17440T A23403G C27110T T27384C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_486841
 2020-07-11 2020-07-11
 India hCoV-19/India/InStem_NCBS_0097/2020
 AT1TG AC27GT A30T CC32AG AC35GA A39G C241T C1218T C3037T C8917T C14408T A23403G C27110T T27384C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_486856
 2020-07-11 2020-07-11
 Romania hCoV-19/Romania/ROSV_12287/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C17822T A20268G A23403G G23593T A29827T TG29829AT T29832C CCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29835-

EPI_ISL_493724
 2020-07-11 2020-07-21
 United Kingdom hCoV-19/England/SHEF-CF5FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3815A C14408T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497868
 2020-07-11 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498069
 2020-07-11 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T A939G C3037T A6073G G10870T C14408T C19662T A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498071
 2020-07-11 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T A3983G A4548G A7064G C10626T G11335T C14408T G20679T C22675T A23403G A24782C C25521T C26586T T27384C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498583
 2020-07-11 2020-07-27
 Singapore hCoV-19/Singapore/685/2020
 ATTAAAGGTTTAT1- C6310A C6312A G11083T C12400T C13730T C16887T C19524T T21775C C23929T G25907A C28311T AAAAAAAAAAAA29892-

EPI_ISL_499431
 2020-07-11 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169329/2020
 ATTAAAGGTT1- C241T C3037T T3049C C14408T A20541R G21624T A23403G C26013G G27877T A28523G GGG28881AAC C29870M

EPI_ISL_500796
 2020-07-11 2020-07-29
 Norway hCoV-19/Norway/2877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T G17280T A23403G C23731T C24912T C27970T C28674T G28857T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509154
 2020-07-11 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4795T C14408T C18486T A20268G T22162C A23403G A24905C C26776T C28854T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509155
 2020-07-11 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2884C C3037T G4285T C9778T C14408T A20268G A23403G C28854T C28887T A28989T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509156
 2020-07-11 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10793T C14408T C18877T A23403G A25076G G25563T G25660C C26192T G27613A

EPI_ISL_509157
 2020-07-11 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T G1264T C3037T C14408T G16852T A23403G G25563T G27505C C27964T

EPI_ISL_509159
 2020-07-11 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8729A C14408T G20980A A23403G G24751T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509160
 2020-07-11 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1514T C3037T A7068G C8078T G11837T C14408T A23403G G25563T A28870T

EPI_ISL_509161
 2020-07-11 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10038T C14408T C20233T A23403G G25563T G29553A

EPI_ISL_509162
 2020-07-11 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14322T C14408T A20268G A23403G T24076C G25555T G25595T C28854T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509225
 2020-07-11 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000568/2020
 ATTA1- C241T C2609A C3037T T12503C G13201A C14408T A23403G G25770T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509226
 2020-07-11 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000569/2020
 ATT1- C241T C3037T G5830A G11447A C13059T C14408T G18225T C22675T A23403G G25440T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_509233
 2020-07-11 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T T12503C C14408T A23403G GGG28881AAC C29721T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509389
 2020-07-11 2020-08-05
 Singapore hCoV-19/Singapore/779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C12400T C13730T C19524T T21775C C23929T G25907A C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509898 MT846584
 2020-07-11 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1463A G2305T C3037T G7557A C8818T C14408T C18377T A23403G G25563T G27047C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509904 MT846590
 2020-07-11 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C T1863G C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509905 MT846591
 2020-07-11 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C25276T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509921 MT846607
 2020-07-11 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510698 LR882167
 2020-07-11 2020-08-07
 Switzerland 200009
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2972S C3037T G3107K C5787T G10265A C14408T C15720T A15972G C17285T T17675Y C19718T A23403G G26700T T28759C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510735 LR882196
 2020-07-11 2020-08-07
 Switzerland 200050
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C9286T C14408T C19763T G19872T G21123T C21846T A23403G C25037T G28321T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510736 LR882189
 2020-07-11 2020-08-07
 Switzerland 200052
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10265A C14408T C15720T A15972G C19718T A21323G A23403G G26700T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510737 LR882197
 2020-07-11 2020-08-07
 Switzerland 200053
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T2926Y C3037T T3144K T6890W T7013K T7825W C10833T C14408T C15324T C15654T C19185T A21137R A23403G G28747T G28917T C29144T G29543T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512350
 2020-07-11 2020-08-11
 United Kingdom hCoV-19/England/NORT-2939E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C5184T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC C29445T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512618
 2020-07-11 2020-08-11
 Ukraine hCoV-19/Ukraine/203100339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1610G C3037T C7086T C9344T G9479K G12031A C13335T C14408T G19816T T21760C C22000T A23403G C24370T C28887T

EPI_ISL_514427 MT883502
 2020-07-11 2020-08-14
 Serbia SARS-CoV-2/human/SRB/KV57-12-07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C15720T A15972G C19718T C22677T A23403G G26700T T28759C GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515049
 2020-07-11 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2647/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T C22127T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_515050
 2020-07-11 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2648/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G C24133T G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_515052
 2020-07-11 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2650/2020
 ATTAAAGGTTTATAC1- C241T C3037T A3911C G13723T C14408T C18928T A23403G GGG28881AAC C29708T ACAAAAAAAAAAAAAA29869-

EPI_ISL_515066
 2020-07-11 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515071
 2020-07-11 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T C14408T A15984T C20946T C22075T A23403G C27945T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517885 MT966171
 2020-07-11 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0995/2020
 ATT1- C241T G347A T833C C1059T C3037T T13668C C14408T G15438T C16954T A20142G C22295T A23403G G25563T G25906T C27964T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_517888 MT966174
 2020-07-11 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0998/2020
 ATTAA1- T224C C241T C313T C823T C3037T G11083T C14408T A23403G G25249T C26464T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_517890 MT966176
 2020-07-11 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1000/2020
 ATT1- C241T C1059T C3037T C7815T C8980T G11083T C14408T A23403G G25563T A29125T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_518111 MT973162
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3564T T7540C G11535T G14277T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24933T T27957C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518116 MT973167
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2488T C3037T G3564T T7540C G11535T G13571T G14277T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24933T T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518120 MT973171
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T G2604T C3037T G3564T T7540C G8790T G11535T G14277T C14408T G16647T C18555T G22992A G23401A A23403G G24933T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518124 MT973175
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T G3564T G7038T T7540C G11535T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24933T T27957C GGG28881AAC TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_518125 MT973176
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T G3564T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24933T T27957C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518198 MT973249
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518199 MT973250
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518958 MT970480
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_518959 MT970481
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2397T C3037T T7540C T11049C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518963 MT970482
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518976 MT972813
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_518982 MT972769
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C14616T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518987 MT972774
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_518992 MT972779
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3425T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518993 MT972780
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G28514T GGG28881AAC G29692T

EPI_ISL_518994
 2020-07-11 2020-08-25
 Australia hCoV-19/Australia/VIC4593/2020
 ATTAA1- A6R C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27673T GGG28881AAC

EPI_ISL_518997 MT972783
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T G11029T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_518998 MT972784
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4597/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C225T C241T A1163T C3037T T7540C C12784T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519013 MT972799
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519019 MT972805
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC

EPI_ISL_519363 MT970296
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_519416 MT970328
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4031/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519418 MT970330
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C26882T GGG28881AAC

EPI_ISL_519422 MT970355
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519458 MT970393
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519588 MT970599
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519589 MT970600
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519654 MT970659
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519658 MT970168
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_520509 MT970151
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C17707T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520511 MT970153
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_520513 MT970155
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3796/2020
 ATTA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_520533 MT969993
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C560T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520548 MT970170
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520549 MT970171
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520560 MT970223
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520561 MT970159
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3848/2020
 ATTAAAGGTTTATACC1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520565 MT970164
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520621 MT970182
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520658 MT970343
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T C15615T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_520845 MT969833
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520847 MT969835
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19263T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520863 MT969852
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520944 MT969998
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T24412C T24847C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520983 MT969988
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26645T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520986 MT969999
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27529G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520989 MT970005
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520990 MT970006
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3311/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_520995 MT969871
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13011T C14408T G16647T C18555T A20437G G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521078 MT969985
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521080 MT969987
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3401/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_521082 MT969990
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18267T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521774 MT969765
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A10055G C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521789 MT969756
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3587T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521791 MT969764
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_521797 MT969763
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521823 MT969762
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2993/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521825 MT969761
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_521827 MT969760
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2997/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521836 MT969759
 2020-07-11 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3006/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522500
 2020-07-11 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2721/2020
 C5812T C8782T G11230T G20580T C25688A T28144C G28167A G28198T G28878A G29742A

EPI_ISL_523349
 2020-07-11 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523534
 2020-07-11 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21621T A23403G G28090T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524735
 2020-07-11 2020-08-28
 India hCoV-19/India/GJ-GBRC-377a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T T3833G C18877T C22444T A23403G C23997T T24811A G25563T C26735T C28854T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_524736
 2020-07-11 2020-08-28
 India hCoV-19/India/GJ-GBRC-377b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T T3833G A23403G T24811A T27164G C28854T T29335C AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_524746
 2020-07-11 2020-08-28
 India hCoV-19/India/GJ-GBRC-385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C884T G1397A A6325G G8653T A19073G G23285T G24821T G27915T G28209C T28688C C28868T C29077T G29742T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524747
 2020-07-11 2020-08-28
 India hCoV-19/India/GJ-GBRC-386a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C14408T C18877T C22444T A23403G C23997T G25563T C26735T C28854T TAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29811-

EPI_ISL_524748
 2020-07-11 2020-08-28
 India hCoV-19/India/GJ-GBRC-386b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T A11430T C14408T C18877T C22444T A23403G G25563T C26735T A27994G C28854T T29335C TAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29811-

EPI_ISL_524749
 2020-07-11 2020-08-28
 India hCoV-19/India/GJ-GBRC-387a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C884T G1397A A6325G G8653T A19073G G23285T G24821T G27915T T28688C C28868T C29077T G29742T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524750
 2020-07-11 2020-08-28
 India hCoV-19/India/GJ-GBRC-387b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C884T G1397A A6325G G8653T C17440T A19073G G23285T G24821T G27915T T28688C C28868T C29077T G29742T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_524751
 2020-07-11 2020-08-28
 India hCoV-19/India/GJ-GBRC-388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T G2164T C2836T C3037T G5515T C8290T G8368A C14408T C15495T C18877T C22444T A23403G G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_525720
 2020-07-11 2020-09-01
 United States hCoV-19/USA/WA-S2730/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T T19839C C20148T A23403G C25553T GGG28881AAC C29784T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_525721
 2020-07-11 2020-09-01
 United States hCoV-19/USA/WA-S2731/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C C20148T A23403G C25553T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_526288
 2020-07-11 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97B526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526289
 2020-07-11 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97B580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1971C C3037T G10265A G11083T C14408T A23403G G25135T G27364T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526290
 2020-07-11 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97B623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3885T C4002T C6762T G10097A T11731C C13536T C14408T G21800T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526291
 2020-07-11 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97B896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T A16474G C17375T T20484G A23403G C23731T C25000T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527036
 2020-07-11 2020-09-03
 Australia hCoV-19/Australia/NSW2526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C14408T A14489R G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527632
 2020-07-11 2020-09-04
 United States hCoV-19/USA/AR-CDC-4205/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527633
 2020-07-11 2020-09-04
 United States hCoV-19/USA/AR-CDC-4206/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T A29147G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527634
 2020-07-11 2020-09-04
 United States hCoV-19/USA/AR-CDC-4212/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527635
 2020-07-11 2020-09-04
 United States hCoV-19/USA/AR-CDC-4213/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T A29147G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527636
 2020-07-11 2020-09-04
 United States hCoV-19/USA/AR-CDC-4218/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527755
 2020-07-11 2020-09-04
 Costa Rica hCoV-19/Costa Rica/INC-0087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C2716T C3037T C7482T C14408T C17010T A23403G G25563T C25810T TG29867GA A29871T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_529663
 2020-07-11 2020-09-10
 United Kingdom hCoV-19/England/HECH-259A4F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189A C241T C3037T A4297G A4762G A5040G C14408T C16409T A23403G C23638T AG28877TC GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529664
 2020-07-11 2020-09-10
 United Kingdom hCoV-19/England/HECH-259A501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189A C241T C3037T A4297G A4762G A5040G C14408T A23403G C23638T AG28877TC GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532578
 2020-07-11 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-94390D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C9561Y G11083T G13235A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532579
 2020-07-11 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9438F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T G11083T G13235A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532617
 2020-07-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943B70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C14408T C21637T A23403G G24368T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532624
 2020-07-11 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9438E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T G11083T G13235A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533003
 2020-07-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-75872B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1593Y C3037T C6543T C14408T A20268G C21736T C22732T A23403G C28854T G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533009
 2020-07-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A6FEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533021
 2020-07-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A3035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5093Y G10265A C14408T C16887T C20555T A23207G A23403G G25352K C28603T GGG28881AAC C29363A C29367Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533051
 2020-07-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A7E55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T G16795T C16887T A19650G G21538A A23403G C25378T G25440T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533053
 2020-07-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79F351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T T14466C C16887T A19650G G21538A A23403G C25378T G25440T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533056
 2020-07-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A2EE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T AG3327GT A3569G C3695T A6211G A8659G C14408T G17964T C19488T A23403G G23868T C25867T C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533179
 2020-07-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79F807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T C7113T A9433T G10265A C14408T C16887T A19650G G21538A A23403G C25378T G25440T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533192
 2020-07-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79F694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T C16887T A19650G G21538A A23403G C25378T G25440T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533194
 2020-07-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A7426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535657 MW001884
 2020-07-11 2020-09-15
 United States SARS-CoV-2/human/USA/AR-CDC-0865/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535658 MW001670
 2020-07-11 2020-09-15
 United States SARS-CoV-2/human/USA/AR-CDC-0866/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T A17884R G18538T A23403G T24703Y G25563T G26690T A29147G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_547666
 2020-07-11 2020-09-24
 United States hCoV-19/USA/WI-GMF-M00015/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C715T C1059T G2036T C3037T C4686T C11916T C14408T G23311T A23403G A23586G G25563T G27948C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_560979
 2020-07-11 2020-09-30
 Sweden hCoV-19/Sweden/20-08931/2020
 C241T C3037T G4300T C5002T C14408T C17172A G17721T A23403G A23851G G25906T C26447T C28507T GGG28881AAC C28887T

EPI_ISL_564116
 2020-07-11 2020-09-30
 Australia hCoV-19/Australia/VIC6886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C A10323G T12538C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564117
 2020-07-11 2020-09-30
 Australia hCoV-19/Australia/VIC6890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564275
 2020-07-11 2020-09-30
 Australia hCoV-19/Australia/VIC7195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564278
 2020-07-11 2020-09-30
 Australia hCoV-19/Australia/VIC7201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C10228Y C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564283
 2020-07-11 2020-09-30
 Australia hCoV-19/Australia/VIC7208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564287
 2020-07-11 2020-09-30
 Australia hCoV-19/Australia/VIC7214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C3738T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564295
 2020-07-11 2020-09-30
 Australia hCoV-19/Australia/VIC7227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66Y C241T A1163T C3037T T7540C C10507Y C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_569615
 2020-07-11 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0007/2020
 AT1- C20T C241T G247T TGGTCATGTTATGGT508- C1059T C3037T G11083T A11201G G14008A C14408T C17676T C22227T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

MT947583
 2020-07-11 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2730/2020
 ATTAAAGGTTTATACC1- C241T C3037T C14408T T19839C C20148T A23403G C25553T GGG28881AAC C29784T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

MT947592
 2020-07-11 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2731/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C C20148T A23403G C25553T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT953891
 2020-07-11 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-377a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T T3833G C18877T C22444T A23403G C23997T T24811A G25563T C26735T C28854T AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

MT953893
 2020-07-11 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-377b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C3037T T3833G A23403G T24811A T27164G C28854T T29335C AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

MT953996
 2020-07-11 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-386a/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T C14408T C18877T C22444T A23403G C23997T G25563T C26735T C28854T TAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29811-

MT954060
 2020-07-11 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-386b/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C2836T C3037T A11430T C14408T C18877T C22444T A23403G G25563T C26735T A27994G C28854T T29335C TAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29811-

MT954065
 2020-07-11 2020-09-03
 India SARS-CoV-2/human/IND/GBRC-388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T G2164T C2836T C3037T G5515T C8290T G8368A C14408T C15495T C18877T C22444T A23403G G25563T C26735T C28854T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

MT968064
 2020-07-11 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4205/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MT968065
 2020-07-11 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4206/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T A29147G AAAAAAAAAAAAAAAAAAAAA29883-

MT968066
 2020-07-11 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4212/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MT968067
 2020-07-11 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4213/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T A29147G AAAAAAAAAAAAAAAAAAAAA29883-

MT968068
 2020-07-11 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4218/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_493684
 2020-07-12 2020-07-21
 United Kingdom hCoV-19/England/SHEF-C6051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497778
 2020-07-12 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497790
 2020-07-12 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497849
 2020-07-12 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497853
 2020-07-12 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497867
 2020-07-12 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C26882T C27213T C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498084
 2020-07-12 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0543/2020
 AT1- C241T C3037T C4002T T8323C G10097A C13536T T14345C C14408T G18292T C19859T C22227T A23403G C23731T TC25548CT C27998T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498803 MT846012
 2020-07-12 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_344/2020
 C241T C683T A1163T C3037T C3177T G3259T T11039C C14408T C18555T A23403G G23587T TTA26159- GGG28881AAC -29820TTT

EPI_ISL_498804 MT846013
 2020-07-12 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_345/2020
 C241T A1163T C3037T C3961T C14408T C15656T C16260T C18582T A23403G GGG28881AAC

EPI_ISL_500715
 2020-07-12 2020-07-29
 United Kingdom hCoV-19/England/203020514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7165T C8991Y G10265A C14408T C15720T A15972G C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509245
 2020-07-12 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000591/2020
 ATTA1- C241T C3037T C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509279
 2020-07-12 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000628/2020
 A1- C241T C3037T C6762T A9439G T12503C C14408T A23403G G25770T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509388
 2020-07-12 2020-08-05
 Singapore hCoV-19/Singapore/778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3951G C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509807 MT846608
 2020-07-12 2020-08-05
 United States SARS-CoV-2/human/USA/OH-UW-921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C25276T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509892 MT846578
 2020-07-12 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T C11956T C12025T C14408T T19839C A23403G C23707T C26873T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509895 MT846581
 2020-07-12 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509899 MT846585
 2020-07-12 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T G10180T C11956T C12025T C14408T T19839C G22225T A23403G C23707T G26257A GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509902 MT846588
 2020-07-12 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C25276T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509903 MT846589
 2020-07-12 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C25276T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509909 MT846595
 2020-07-12 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T G5830A C13487T C14408T C15495T C16192T C16260T C21707T A23403G C23557T C24937T A25195G C25267T G25563T G26690T G28077T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509917 MT846603
 2020-07-12 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509922 MT846609
 2020-07-12 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G A25048T G25563T C26625T C29095T C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509925 MT846612
 2020-07-12 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C T14259C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509932 MT846619
 2020-07-12 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T C22208T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510738
 2020-07-12 2020-08-07
 Switzerland hCoV-19/Switzerland/200054_613_G05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T A5638R C9286T C9438T C14408T C19763T G21123T C21846T A23403G C25037T C27005T G28321T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514253
 2020-07-12 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-DU_16/2020
 C241T T523C A1163T C2509T C3037T C4009T T10006C C14408T T21994C A23403G C23525T G25494T G25563T C26735T G28077T C28854T

EPI_ISL_515053
 2020-07-12 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2651/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T G29864A ACAAAAAAAAAAAAAA29869-

EPI_ISL_515054
 2020-07-12 2020-08-18
 South Korea hCoV-19/South Korea/KCDC2652/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_517897 MT966193
 2020-07-12 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1007/2020
 AT1- C241T C1059T C1385T G1738T C3037T G3242A C9165T C11916T C14408T A23403G C24896A G25563T C28087T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518010
 2020-07-12 2020-08-25
 Singapore hCoV-19/Singapore/846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1821T C6310A C6312A G7560A A9419G G11083T C13730T G16089A A16464G C19524T T19530G G21974C C23929T C27323T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518011
 2020-07-12 2020-08-25
 Singapore hCoV-19/Singapore/847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1821T C6310A C6312A G7560A A9419G G11083T C13730T G16089A A16464G C19524T T19530G G21974C C23929T C27323T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518109 MT973160
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518119 MT973170
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C2488T C3037T G3564T T7540C G11535T G14277T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24933T T27957C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518387 MT970619
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518914 MT970696
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518981 MT972768
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T A19548G G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518983 MT972770
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4581/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC

EPI_ISL_518984 MT972771
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4583/2020
 ATTAAAGGTTT1- C241T A1163T A2160C C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_518985 MT972772
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22498T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518986 MT972773
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518988 MT972775
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4587/2020
 AT1-K C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518989 MT972776
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_518990 MT972777
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_518991 MT972778
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_518995 MT972781
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T A19073G G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518999 MT972785
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4598/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519000 MT972786
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519001 MT972787
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519002 MT972788
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519003 MT972789
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519004 MT972790
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519014 MT972800
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519015 MT972801
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2857T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519016 MT972802
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4620/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519018 MT972804
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6151T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519020 MT972806
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519022 MT972807
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519030 MT972818
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519031 MT972819
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4640/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519032 MT972820
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519033 MT972821
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519034 MT972822
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519035 MT972823
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4644/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519036 MT972824
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519114 MT970916
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4726/2020
 ATTAAAGG1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519115 MT970917
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4727/2020
 ATTAAAGGTTTATACCT1- C66T C241T C245T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519116 MT970918
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4728/2020
 ATTAA1- C66T C241T C245T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519269 MT972853
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519274 MT972856
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519275 MT972857
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6539T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23413T GGG28881AAC C29774T

EPI_ISL_519455 MT970390
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G7756T C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519504 MT970441
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T6745C T7540C C14408T C14599T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519529 MT970506
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14244T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519634 MT970618
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519669 MT970452
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25275T GGG28881AAC

EPI_ISL_519687 MT970682
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T597C A1163T C3037T T7540C C14408T C16092T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519688 MT970683
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519948 MT972814
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5150/2020
 ATTAAAG1- C241T A1163T C3037T T7540C A10055G C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519950 MT972816
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23413T GGG28881AAC T29680C

EPI_ISL_520449 MT970112
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T G3259T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520508 MT970150
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3791/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C17762T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_520510 MT970152
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3793/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520512 MT970154
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3795/2020
 ATTA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_520547 MT970169
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520552 MT970210
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520553 MT970211
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A12126G C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520563 MT970161
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520564 MT970162
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520567 MT970167
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520568 MT970175
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520602 MT970260
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T A16566G G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520604 MT970263
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520630 MT970221
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25836T G25996T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520647 MT970283
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520850 MT969838
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3738T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_520853 MT969841
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520860 MT969849
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3154/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520929 MT969853
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3249/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520935 MT969796
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520936 MT969797
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_521079 MT969986
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521093 MT970088
 2020-07-12 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A39M C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G T25969C GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_522493
 2020-07-12 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2714/2020
 ATTAAAGG1- C241T C3037T G11083T C13051T C14408T C21597T A23403G G27933T GGG28881AAC C29144T

EPI_ISL_522495
 2020-07-12 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2716/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T C4039T C14408T G16808A C19983T C21575T A23403G GGG28881AAC G28899T G29810T

EPI_ISL_522501
 2020-07-12 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2722/2020
 ATTAAA1- C5812T C8782T G11230T G20580T C25688A T28144C G28167A G28198T G28878A G29742A G29868-

EPI_ISL_523074
 2020-07-12 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-22-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T G11083T C11109T G12794A C14184T C14408T C15848T A23403G G25563T G26730T C29253T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525118
 2020-07-12 2020-08-28
 United States hCoV-19/USA/MD-MDH-0155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G219T C241T C601T C3037T C8389T G12832T C14408T A23403G G25563T C27765T G27915A C28045T A28254- A28877T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_525722
 2020-07-12 2020-09-01
 United States hCoV-19/USA/WA-S2732/2020
 ATTAAAG1- C241T C344T C1288T C3037T T11209A C14265T C14408T C15763T C19662T A20268G G20962T C22978T A23403G C23635T C28849T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525723
 2020-07-12 2020-09-01
 United States hCoV-19/USA/WA-S2733/2020
 ATTAAAGGTTTAT1- C241T C3037T C4021T C6781T C6927T A10181G C11916T C14408T G16935T C19185T A23403G G25790T C26900T T27900A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_527637
 2020-07-12 2020-09-04
 United States hCoV-19/USA/AR-CDC-4219/2020
 G199A C241T C1059T C2925T C3037T G11083T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527638
 2020-07-12 2020-09-04
 United States hCoV-19/USA/AR-CDC-4220/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527639
 2020-07-12 2020-09-04
 United States hCoV-19/USA/AR-CDC-4221/2020
 G199A C241T C1059T C2925T C3037T G11083T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_529590
 2020-07-12 2020-09-10
 United Kingdom hCoV-19/England/BIRM-60CFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189A C241T C3037T A4297G A4762G A5040G C14408T A23403G C23638T C24616T AG28877TC GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532557
 2020-07-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943C31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T G22335K A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532558
 2020-07-12 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-943C40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532562
 2020-07-12 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-94385B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532595
 2020-07-12 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-94386A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C228T C241T C1420T C3037T C7279T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533108
 2020-07-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A0C25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T T5619Y C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533223
 2020-07-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A9F8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9165T C9700T G11083T C11747T C13378T C14408T T16452C A23403G A25175C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534224
 2020-07-12 2020-09-11
 Sweden hCoV-19/Sweden/20-08927/2020/P1
 C241T C1059T A2206C C3037T C3961T C6696T C7299T C7390T C13517T C14408T A23403G G24199T C24337A G24368T G25563T

EPI_ISL_547608
 2020-07-12 2020-09-24
 United States hCoV-19/USA/WI-GMF-10366/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C8016T C14408T G19677T A23403G C28977T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548271
 2020-07-12 2020-09-26
 United States hCoV-19/USA/CA-CZB-3339/2020
 ATTAAAGGTTTA1- C241T C3037T A8026G C14408T C18486T A20268G T22162C A23403G G25244T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548328
 2020-07-12 2020-09-26
 United States hCoV-19/USA/CA-CZB-3342/2020
 ATTAAA1- T42W C241T C3037T C4582T G6536T C13119T C14408T G15982T A20268G A23403G G26466T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548334
 2020-07-12 2020-09-26
 United States hCoV-19/USA/CA-CZB-3340/2020
 ATTAAAGGTT1- C241T C3037T A8026G C11832T C14408T C18486T A20268G T22162C A23403G G25244T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_556938
 2020-07-12 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C15688T C19488T A23403G T25851C C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557291
 2020-07-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-8313C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5010T C14408T T15648C A23403G A27421G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557305
 2020-07-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-839CE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27513T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557307
 2020-07-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-80900F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G C23655T C23673T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557329
 2020-07-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-841C9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11572T C13536T C14408T A23403G A23592T C23731T C24912T G25440T C27970T C28674T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557515
 2020-07-12 2020-09-28
 United Kingdom hCoV-19/England/MILK-85C54A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1185T C1450T T2124C C3037T C4002T C7113T C8818T G10097A C13536T C13743T C14408T C15738T G23236T A23403G C23731T G25720T G26065T GGG28881AAC -29682TAATC A29687W CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560978
 2020-07-12 2020-09-30
 Sweden hCoV-19/Sweden/20-08930/2020
 C241T C1059T A2206C C3037T C3961T C6696T C7299T C7390T C8499T C13517T C14408T A23403G G24368T G25563T

EPI_ISL_562704
 2020-07-12 2020-09-30
 Australia hCoV-19/Australia/VIC6885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T6199C C7528T T7540C C12513T C14408T G16647T C18555T C22480T G22992A G23401A A23403G T25704C CTC25708- A25712C T25716A GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562964
 2020-07-12 2020-09-30
 Australia hCoV-19/Australia/VIC10574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564115
 2020-07-12 2020-09-30
 Australia hCoV-19/Australia/VIC6883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_569616
 2020-07-12 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0008/2020
 ATTAAAG1- C241T C1059T C3037T C5413T T9041G G14008A C14408T C17676T C22227T G22249T A23403G G25563T G28899T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT937818
 2020-07-12 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G219T C241T C601T C3037T C8389T G12832T C14408T A23403G G25563T C27765T G27915A C28045T A28254- A28877T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT947548
 2020-07-12 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2733/2020
 ATTAAAGGTTTAT1- C241T C3037T C4021T C6781T C6927T A10181G C11916T C14408T G16935T C19185T A23403G G25790T C26900T T27900A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT947561
 2020-07-12 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2732/2020
 ATTAAAG1- C241T C344T C1288T C3037T T11209A C14265T C14408T C15763T C19662T A20268G G20962T C22978T A23403G C23635T C28849T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT968069
 2020-07-12 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4219/2020
 G199A C241T C1059T C2925T C3037T G11083T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MT968070
 2020-07-12 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4220/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MT968071
 2020-07-12 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4221/2020
 G199A C241T C1059T C2925T C3037T G11083T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MW012267
 2020-07-12 2020-09-17
 Serbia SARS-CoV-2/human/SRB/NP40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T G10265A A10874G C14408T C15720T A15972G A16128G C19718T A23403G C25669G G25684T G26700T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498072
 2020-07-13 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0526/2020
 ATTA1- C241T GC354TT C1113T C3037T C4093T C14408T A20268G A23403G C25721T G26690T G27074T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498074
 2020-07-13 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C4002T G10097A G11083T C13536T C14408T C18747T A23403G C23731T A26154T GGG28881AAC G29425T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_498110
 2020-07-13 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T T1863A C3037T C14408T G21586T A23403G G26144A G28904T C29119T C29535T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_498113
 2020-07-13 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C6762T T12503C C14408T A23098G A23403G G25455T G25770T T27296C GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498592
 2020-07-13 2020-07-27
 Singapore hCoV-19/Singapore/694/2020
 ATTAAAGGTTTA1- C2245T C6310A C6312A T8731C G11083T C13730T G19111K C19524T C20468T C23929T C25511T C28311T AAAAAAAAAAAA29892-

EPI_ISL_499354
 2020-07-13 2020-07-28
 United Kingdom hCoV-19/Scotland/CVR3956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T12383G C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499361
 2020-07-13 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-168EB0/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C3037T T3049C C14408T G21624T A23403G G27877T A28523G GGG28881AAC

EPI_ISL_499400
 2020-07-13 2020-07-28
 United Kingdom hCoV-19/Wales/PHWC-169268/2020
 AT1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_499808
 2020-07-13 2020-07-28
 United Kingdom hCoV-19/England/NOTT-112D5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G160T C241T C3037T C14408T C20148T A21137G A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_500799
 2020-07-13 2020-07-29
 Norway hCoV-19/Norway/2881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11758T G11842A A12759G C12789T C14408T G18292T A20268G A23403G C28344T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509163
 2020-07-13 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11824T C14408T A18259G G18397A A20268G A23403G C28854T C28887T

EPI_ISL_509166
 2020-07-13 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9676G C12781T C14408T G15921T A20268G A23403G C28854T C29274A

EPI_ISL_509167
 2020-07-13 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9676G C14408T G15921T G17808A A20268G A23403G C28854T C29274A

EPI_ISL_509168
 2020-07-13 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1005G C3037T T6407A C14408T G20980A A23403G C27335T AAAAA29899-

EPI_ISL_509169
 2020-07-13 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8818T C14408T C15952T C16293T G18337T G20083A G20980A C21789T A23403G

EPI_ISL_509170
 2020-07-13 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8818T G12565T C14408T C15952T G18337T G20980A C21789T A23403G

EPI_ISL_509171
 2020-07-13 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8818T G12565T C14408T C15952T G18337T G20980A C21789T A23403G A29903-

EPI_ISL_509174
 2020-07-13 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G G8216A G10793T C14408T T17928C C18877T A23403G A25076G G25563T G25660C C26192T G27613A

EPI_ISL_509223
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000566/2020
 ATTAAAGGTTTATACC1- C241T C3037T C6762T A9439G T12503C C14408T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509224
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G709A C3037T T7012A C10183T C14408T C19402T A23403G G28326T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509228
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C6762T A9439G T12503C C14408T G17721A C20823T A23403G G25770T GGG28881AAC C29721T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_509230
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000574/2020
 C241T C355T C3037T C4093T C4455T C14408T A20268G A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509231
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000575/2020
 A1- G174T C241T C539T C583T C3037T C9857T C14408T T23084C A23403G A23920G G27561T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509232
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000576/2020
 ATTAAAGG1- C241T C3037T G11417T T12503C C14408T C16490T C18431T A23403G G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509236
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5108A T6958C C14408T A23403G C23625T G25444C GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_509237
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000581/2020
 ATTAAAGGTTTA1- C241T G942A C3037T C6762T T7096A T12503C C14408T A23403G C25546T G25770T G26951T GGG28881AAC C29721T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_509238
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T T9232C T12503C C14408T A23403G A25964C GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509239
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6762T T12503C C14408T A23403G G25455T G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509240
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000584/2020
 C241T C3037T T5653C A7064G A10323G C14408T C19718T C22675T A23403G C25521T C26586T T27384C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_509241
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000585/2020
 ATTA1- C241T T490A C3037T C9857T C14408T A23403G A23920G A26530G G27561T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509242
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G174T C241T C3037T C9857T C14408T A23403G A23920G A26530G G27561T A29488G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509243
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000588/2020
 ATTAAAGGTTTA1- C241T C3037T C6762T T12503C C14408T C16887T A23403G G25455T G25770T GGG28881AAC C29721T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_509244
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000589/2020
 ATTAAA1- C241T C3037T T4579A C6762T T12503C C14408T G14653T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509250
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000597/2020
 AT1- C241T C1063T C2094T T2432C C3037T C14408T G16853T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_509252
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000599/2020
 ATTA1- C241T C3037T T8041A C14408T C19983T C22675T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_509254
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C20234T G22343T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509260
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000607/2020
 ATT1- C241T C3037T C6317T C14408T C20234T G22343T A23403G GGG28881AAC C29535A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509286
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000636/2020
 ATT1- C241T C355T C3037T C4093T C4455T C14408T A20268G A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509287
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T2029C C3037T C14408T C16376T A23403G C24034T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509289
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000640/2020
 ATTAAAGG1- C241T C355T C3037T C12880T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509290
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000641/2020
 AT1- C241T A964G C2094T C3037T T8761C A10994C C14408T G16853T G20944T A21924C A23403G C25292T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509293
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000649/2020
 A1- C241T C355T C3037T C4093T C4455T G5857T C14408T T16976C C18570T A20268G A23403G C29666T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_509294
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000650/2020
 ATTA1- C241T C245T C2676T C3037T C7728T T12503C C14408T C21595T C22224T A23403G GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509295
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000651/2020
 A1- C241T C355T C3037T C4093T C4455T C14408T A20268G A23403G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509296
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A7064G C7165T C14408T C22675T A23403G C23997T C25521T C26586T T27384C GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_509297
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000654/2020
 C241T C355T C3037T C4093T C4455T C14408T A20268G A23403G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_509300
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C245T C2676T C3037T C7728T T12503C C14408T C21595T C22224T A23403G GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509313
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001055/2020
 ATTAAAGGTTTATACCT1- C241T G709A C3037T G3206T T7012A C14408T C19402T A23403G G28326T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509338
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001085/2020
 AT1- C241T C3037T C4002T G10097A C13536T C14408T C18747T A23403G C23731T C24651T GGG28881AAC G29425T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509339
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001087/2020
 AT1- C241T C3037T C3828T T9508C C14408T C18388A C22675T A23403G G23868T G24794T G28621A GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509340
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C28005T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509341
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001089/2020
 ATTAAAG1- C241T C3037T G11417T T12503C C14408T C16490T C18431T A23403G G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509343
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001092/2020
 ATTAAAGGTT1- C241T C355T C3037T C4093T C4455T C14408T A20268G A23403G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_509345
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C6762T G8017T T12503C C14408T T17007C C21846T A23403G G25770T GGG28881AAC C29721T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509346
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001097/2020
 ATTA1- C241T C3037T C6541T T12503C C14408T G15921A A16890G G22592T A23403G C23525T A28358G GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_509348
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001099/2020
 C241T C3037T T7012A C14408T C19402T A23403G G28326T GGG28881AAC C29280T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509352
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C313T C3037T C6762T T12503C C14408T A23403G G25770T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_509353
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001104/2020
 ATTA1- C241T C3037T C4002T C9319T C13536T C14016T C14408T C18747T A23403G C23731T GGG28881AAC G29425T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509355
 2020-07-13 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C6762T T12503C C14408T A23403G G25455T G25770T GGG28881AAC C29721T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509385
 2020-07-13 2020-08-05
 Singapore hCoV-19/Singapore/775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13753G C14408T C18486T A20268G T22162C A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509386
 2020-07-13 2020-08-05
 Singapore hCoV-19/Singapore/776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G7560A A9419G G11083T C13730T C19524T G21974C C23929T C26625T C27323T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509387
 2020-07-13 2020-08-05
 Singapore hCoV-19/Singapore/777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C T2170A G2659T C3037T C6286T C6568T C14408T G17686T C18877T C21242T C22444T A23403G G25563T C26735T G28086T G28307T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509791 MT846488
 2020-07-13 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0733/2020
 ATTA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C21306T A23403G G25563T G26690T C28087T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509878 MT846564
 2020-07-13 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T T14191C C14408T C16260T A23403G A24253T G25563T C28821A C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509882 MT846568
 2020-07-13 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T A5535T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509883 MT846569
 2020-07-13 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6238C C14408T C18486T A20268G C21721T T22162C A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509897 MT846583
 2020-07-13 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T T14191C C14408T C16260T A23403G A24253T G25563T C28821A C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509920 MT846606
 2020-07-13 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6238C C14408T C18486T A20268G C21721T TTA21991- T22162C A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509923 MT846610
 2020-07-13 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6238C C14408T C18486T A20268G C21721T TTA21991- T22162C A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509927 MT846614
 2020-07-13 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509931 MT846618
 2020-07-13 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T T14191C C14408T A15942C C16260T A23403G A24253T C25006T G25563T C28821A C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510699 LR882166
 2020-07-13 2020-08-07
 Switzerland 200010
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2914R C3037T A3081W C7005Y T7035W C14408T T18471C C18526T G20102K A23403G C25498T C28139T C28833T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510701 LR882161
 2020-07-13 2020-08-07
 Switzerland 200012
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C775Y C3037T GA6899KW G6902K A6912W A6925W C6927Y TT6931KK CT6936MK C7011M T7018K TT7020KK T7026K G10265A C14408T C15720T A15972G T17675Y C19718T T21075W A21323G A23403G G26700T T28759C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510702 LR882164
 2020-07-13 2020-08-07
 Switzerland 200013
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T433C T2953K C3037T G3074R A3108W C6990Y G11842A A12759G C14408T T17675Y G18292T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510704 LR882163
 2020-07-13 2020-08-07
 Switzerland 200015
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G3056R A3082R T3144K C3738T A6999R G9130T C14408T C16111T G18255K A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510705 LR882169
 2020-07-13 2020-08-07
 Switzerland 200016
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2952W C3037T A3048M A3612R A3643R G3753S C4002T G5950K T7034Y G10097R A10155M C13536T C14408T G19732T A23403G C23731T C24082Y C26985T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510739 LR882199
 2020-07-13 2020-08-07
 Switzerland 200055
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A3057W C3619T T3760W C4002T G5950K C6726Y G6977R G10097R G10265R A12174G C13536T C14408T A16210W TG16249YK C16351Y C16877T G19732T C22450T A22904W T23106Y A23403G C23731T G26389T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510740 LR882198
 2020-07-13 2020-08-07
 Switzerland 200056
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T G9130T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512351
 2020-07-13 2020-08-11
 United Kingdom hCoV-19/England/NORT-293A7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C5184T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC C29445T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512353
 2020-07-13 2020-08-11
 United Kingdom hCoV-19/England/NORT-293AD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C5184T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC C29445T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512354
 2020-07-13 2020-08-11
 United Kingdom hCoV-19/England/NORT-293AE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512358
 2020-07-13 2020-08-11
 United Kingdom hCoV-19/England/NORT-293B78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514382
 2020-07-13 2020-08-17
 South Africa hCoV-19/South Africa/LR00070/2020
 ATTA1- C241T C3037T T4339C G6421T T12503C C14408T G15906T A23403G GGG28881AAC C29721T

EPI_ISL_515829
 2020-07-13 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1427T G2801A C3037T C13667T C14408T C22858T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515830
 2020-07-13 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001345/2020
 C241T T2029C C3037T C6573T A11357C C14408T C16343T C16376T A23403G G23868T C24034T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515831
 2020-07-13 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001346/2020
 ATTAA1- C241T C3037T G11447A C14408T C21306T C22675T A23403G G28077T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_516783
 2020-07-13 2020-08-23
 South Korea hCoV-19/South Korea/KCDC2653/2020
 AT1- T4579A C8782T G11230T G20580T A23403C C26028T C26111T T28144C G28167A G28878A G29742A

EPI_ISL_517658
 2020-07-13 2020-08-24
 Suriname hCoV-19/Suriname/SR-47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G704A T1813A C3037T C14408T C15324T C16193T C18131T A22404T A23403G C25549T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_517812 MT966177
 2020-07-13 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0922/2020
 ATTAAA1- C241T G431T C1059T C1385T G1738T C3037T G3242A C7318T C9611T C11916T C14408T A23403G G25563T C28087T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_517813 MT966178
 2020-07-13 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0923/2020
 ATTAAAG1- C241T G431T C1059T C1385T G1738T C3037T G3242A C7318T C11916T C14408T A23403G G25563T C28087T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_517895 MT966191
 2020-07-13 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1005/2020
 ATTAAAGGTTTATACC1- C241T C815T C3037T C3411T T10795C C14408T C18452T A23403G G25437T C28657T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_517896 MT966192
 2020-07-13 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1006/2020
 ATTAAAGGTT1- C21T C241T C1059T T1570C C2091T C3037T C3874T C7119T C7834T C11325T C14408T A23403G G25563T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_517899 MT966195
 2020-07-13 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1009/2020
 ATTAAAGGTT1- C241T C1059T C3037T G7393T C10188T C14408T C17745T A23403G T24982C G25563T A26231C T27531C C27964T G28077C C29149T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_518040
 2020-07-13 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002454/2020
 ATTAAAG1- C241T C3037T A3989G G11447A C14408T C22675T A23403G A25505T GGG28881AAC AAAAA29899-

EPI_ISL_518041
 2020-07-13 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T A7064G C14408T C22675T A23403G C25521T C26586T T27384C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_518122 MT973173
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518123 MT973174
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518126 MT973177
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27594C T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518127 MT973178
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_518210 MT973262
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6212/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T G3564T T4087G T7540C T10520C C14408T G16647T C18555T G22992A G23401A A23403G G24933T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518218 MT973270
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518910 MT970674
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518957 MT970479
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518977 MT970514
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTA28896-

EPI_ISL_518996 MT972782
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C25889T GGG28881AAC

EPI_ISL_519006 MT972792
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4605/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519008 MT972793
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519009 MT972794
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4608/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519010 MT972795
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519011 MT972796
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519037 MT972825
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519038 MT972826
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519039 MT972827
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519040 MT972828
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519041 MT972829
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T C3587T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519042 MT972830
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519043 MT972831
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4654/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C66T C241T A1163T C3037T T7540C C8099T C14408T G16647T C17850T C18555T G22992A G23401A A23403G G24926T GGG28881AAC

EPI_ISL_519044 MT972832
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T A22055C G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519045 MT972833
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4656/2020
 ATTAAAGGTT1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519046 MT972834
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519048 MT972836
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519049 MT972837
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4660/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519050 MT972838
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519051 MT972839
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519091 MT970889
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_519107 MT970907
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983T G22992A G23401A A23403G GGG28881AAC G29751C

EPI_ISL_519113 MT970915
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4725/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519117 MT970919
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4729/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T G4904T A5353G T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G A28624G GGG28881AAC

EPI_ISL_519256 MT972840
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519257 MT972841
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519258 MT972842
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519259 MT972843
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519260 MT972844
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T T1442C C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27145T GGG28881AAC

EPI_ISL_519261 MT972845
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519262 MT972846
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519263 MT972847
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1514T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519264 MT972848
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4882/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519265 MT972849
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4883/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C T11539C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519266 MT972850
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519267 MT972851
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4885/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519270 MT972854
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4890/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29468T

EPI_ISL_519277 MT972858
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC C29754T

EPI_ISL_519279 MT972860
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519289 MT972870
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T A19376G C22480T G22992A G23401A A23403G T27957C GGG28881AAC

EPI_ISL_519291 MT972872
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22498T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519292 MT972873
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4087G T7540C T10520C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519293 MT972874
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C241T T288K A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519306 MT972887
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519311 MT972892
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519335 MT970651
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A12126G C14408T G16647T C18555T G22992A G23401A A23403G C27654T TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519336 MT970652
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1909T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519344 MT970667
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519345 MT970669
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983T G22992A G23401A A23403G GGG28881AAC G29751C

EPI_ISL_519346 MT970670
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_519347 MT970671
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C28256T GGG28881AAC

EPI_ISL_519349 MT970333
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C722T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC

EPI_ISL_519353 MT970336
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519357 MT970290
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14184T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519360 MT970293
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3968/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519364 MT970297
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519366 MT970299
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519368 MT970301
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519396 MT970306
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_519476 MT970414
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519523 MT970485
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519533 MT970520
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3738T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519536 MT970523
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519540 MT970528
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519572 MT970576
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T A2948G C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519573 MT970577
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C106T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519574 MT970578
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519575 MT970579
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519576 MT970580
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519577 MT970581
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519578 MT970582
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519579 MT970583
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519586 MT970596
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4258/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519587 MT970598
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A39C C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519590 MT970602
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC

EPI_ISL_519598 MT970610
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T

EPI_ISL_519599 MT970613
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519600 MT970615
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519602 MT970621
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519603 MT970622
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519604 MT970623
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC

EPI_ISL_519605 MT970624
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC

EPI_ISL_519607 MT970627
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G27632T GGG28881AAC

EPI_ISL_519613 MT970638
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983T G22992A G23401A A23403G GGG28881AAC G29751C

EPI_ISL_519622 MT970585
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519623 MT970587
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC

EPI_ISL_519626 MT970595
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519627 MT970597
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519629 MT970611
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4333/2020
 ATTAAAGGT1- C241T A1163T C3037T C4887T T7540C C14408T G16647T C18555T C19983T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519631 MT970614
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC G29579A

EPI_ISL_519632 MT970616
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519633 MT970617
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519635 MT970620
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3411T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519636 MT970626
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519637 MT970628
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC

EPI_ISL_519638 MT970629
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519642 MT970639
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519643 MT970640
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519651 MT970655
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC C29200T

EPI_ISL_519652 MT970656
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519653 MT970657
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519657 MT970668
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519662 MT970445
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519664 MT970447
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519665 MT970448
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4369/2020
 AT28881-G C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519666 MT970449
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519667 MT970450
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519668 MT970451
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519671 MT970454
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C T13472C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519672 MT970455
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519679 MT970673
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27594C T27957C GGG28881AAC

EPI_ISL_519686 MT970681
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519689 MT970684
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519690 MT970685
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519697 MT970695
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C G9190A C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519787 MT970484
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4983/2020
 AT28881-C C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T A19548G G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519788 MT970486
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520519 MT969861
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520520 MT969862
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3803/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520524 MT969863
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3807/2020
 ATTAAAGGTTTATACC1- C241T A1163T C2227T C3037T C5301T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G C27625T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520530 MT970496
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3814/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520531 MT970497
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26078T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520543 MT970196
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3830/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC C28961T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520544 MT970197
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520545 MT970198
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520546 MT970200
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520554 MT970214
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3841/2020
 ATTA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520555 MT970216
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520556 MT970217
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520557 MT970218
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520573 MT970224
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520574 MT970226
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520575 MT970227
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_520576 MT970228
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520577 MT970229
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7113T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520578 MT970230
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC C29754T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520579 MT970231
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520580 MT970232
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520581 MT970233
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520582 MT970234
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520583 MT970235
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520584 MT970236
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T C19263T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520585 MT970237
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T11561A C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520586 MT970238
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520587 MT970239
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3874/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520588 MT970243
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3875/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC C29754T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520589 MT970244
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520590 MT970245
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15654T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520591 MT970247
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13115T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520592 MT970248
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C27476T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520593 MT970249
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520594 MT970250
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3881/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520595 MT970252
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3882/2020
 ATTAAAGGTTTAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520596 MT970253
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520597 MT970254
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520598 MT970255
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18267T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520599 MT970256
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T C6543T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C25066T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520600 MT970258
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C1263T C3037T T7540C C14408T C14616T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520601 MT970259
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C12194T C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520603 MT970262
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520606 MT970265
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23758T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520608 MT970267
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520609 MT970268
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C9286T C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520610 MT970269
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6726T T7540C C9661T C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520611 MT970270
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520612 MT970272
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C14768T G16647T A17337G C18555T A19073G G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_520614 MT970276
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18267T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520625 MT970201
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520626 MT970212
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3914/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C27425A GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520627 MT970213
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520628 MT970215
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_520629 MT970219
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520636 MT970240
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T A19682C G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520637 MT970241
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520638 MT970242
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G21255C G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520639 MT970246
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_520640 MT970251
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520641 MT970257
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520642 MT970261
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C25889T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520643 MT970271
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520644 MT970274
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520657 MT970342
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C16616T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29376T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520659 MT970344
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3948/2020
 ATTA1- G204T C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520662 MT970331
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G11083T C14408T G16647T C18555T G20569T C22480T G22992A G23401A A23403G C26305T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520938 MT969829
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3587T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520939 MT969830
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3587T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520940 MT969831
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C3587T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC A29653G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520941 MT969858
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_521099 MT969867
 2020-07-13 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3587T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_522502
 2020-07-13 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2723/2020
 ATTAAAGGTTTA1- G2528A C4679T C6312A C9803T G11083T C13730T T21183C A23403G C23929T C25006T G26152C G28221C C28311T A29871T A29898G

EPI_ISL_522503
 2020-07-13 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2724/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G3287T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_522504
 2020-07-13 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2725/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_522506
 2020-07-13 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2727/2020
 ATTAAAGGTTT1- C241T C1059T T1789A C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_522507
 2020-07-13 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2728/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C9142T C11916T C14408T C16650T A20675T A23403G G25563T C26942T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_524884
 2020-07-13 2020-08-28
 United States hCoV-19/USA/MD-MDH-0157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C936T C3037T G3259T C14408T G21641T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_525738
 2020-07-13 2020-09-01
 United States hCoV-19/USA/WA-S2748/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C17750T C18486T A20268G C21614T T22162C C23029T A23403G G27505A G28798A C28854T C29743T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_526373
 2020-07-13 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A941C/2020
 ATTAAAGGT1- C241T C3037T C7764T C8240Y C9474T C14408T C15237Y C17285T A23403G C26133T GGG28881AAC T29753C C29870M

EPI_ISL_527584 MT958216
 2020-07-13 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1519/2020
 ATTAAAGG1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_527640
 2020-07-13 2020-09-04
 United States hCoV-19/USA/AR-CDC-4226/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527641
 2020-07-13 2020-09-04
 United States hCoV-19/USA/AR-CDC-4227/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_529558
 2020-07-13 2020-09-10
 United Kingdom hCoV-19/England/ALDP-98393E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T G625T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529559
 2020-07-13 2020-09-10
 United Kingdom hCoV-19/England/ALDP-98394D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T G16700T G23149A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530126 MT997228
 2020-07-13 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2769/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T A2440G C3037T C3253T C8639T C9286T G11083T A11732T C14408T G16912T A23403G G25563T G29553A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_532542
 2020-07-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-943BCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532567
 2020-07-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-943BE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532582
 2020-07-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-94384C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10188T C14408T C17750T C19170T G19509A A23403G T23485C G24764T G25996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533152
 2020-07-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A8F15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C2710T C3037T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533205
 2020-07-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A7338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T G3340T C4002T C7948T G10097A C10422T C13536T C14408T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534225
 2020-07-13 2020-09-11
 Sweden hCoV-19/Sweden/20-08933/2020/P1
 C241T C1878T C3037T C5850T C14408T G14414T A18812G A19496G C20233T A23403G G23593C A25744G GGG28881AAC C28923T

EPI_ISL_534228
 2020-07-13 2020-09-11
 Sweden hCoV-19/Sweden/20-08938/2020/P1
 C241T C1059T G2659T C3037T C7471T C9724T C14408T C18744T A23403G G24368T G25563T C28344T

EPI_ISL_541253
 2020-07-13 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1315/2020
 ATTAAAGG1- C1059T C3037T C5547T C10319T C14408T G16710T G20176T A23403G T24274C A25121T G25563T C27964T AACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29767-

EPI_ISL_541684
 2020-07-13 2020-09-23
 India hCoV-19/India/MH-NIV-112247/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C486G G2305T C3037T C5700A G6080A T6620C C11986A T12002C C14408T G22817T A23403G GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_547610
 2020-07-13 2020-09-24
 United States hCoV-19/USA/WI-GMF-10571/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T C16830T G21718T A23403G C27654T C28849T C28869T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548273
 2020-07-13 2020-09-26
 United States hCoV-19/USA/CA-CZB-3351/2020
 ATTA1- C241T A294M C3037T G11083T C11109T C14408T C19983T G21255C A23403G GGG28881AAC G28960T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548275
 2020-07-13 2020-09-26
 United States hCoV-19/USA/CA-CZB-3343/2020
 ATT1- C241T C3037T C12525T C14408T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548285
 2020-07-13 2020-09-26
 United States hCoV-19/USA/CA-CZB-3352/2020
 AT1- C241T C3037T C5079T C11109T C14408T C19983T G21255C A22641R A23403G C25006Y GGG28881AAC G28960T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548293
 2020-07-13 2020-09-26
 United States hCoV-19/USA/CA-CZB-3345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCG1- C241T C3037T C14408T A20055G A20268G A23403G C28854T AGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAAT29735- CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548309
 2020-07-13 2020-09-26
 United States hCoV-19/USA/CA-CZB-3353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGT1- C241T T1398Y C3037T G11083K C11109T T13273Y C14408T C19983T G21255C A23403G GGG28881AAC G28960T G29017S AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548315
 2020-07-13 2020-09-26
 United States hCoV-19/USA/CA-CZB-3354/2020
 ATTAAAGGTTTA1- C241T C3037T C11109T C14408T G18255K C19983T G21255C A23403G GGG28881AAC G28960T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_548363
 2020-07-13 2020-09-26
 United States hCoV-19/USA/CA-CZB-3673/2020
 AT1- C241T G347A C3037T G3871K C14408T G18149T A20268G A23403G T24076C C28854T G29477K CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548479
 2020-07-13 2020-09-26
 United States hCoV-19/USA/CA-CZB-3677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCG1- C241T G1021A C3037T C4582T G6404T G13427R C14408T C19859T A20268G A23403G T25123C G25654T C27925T G28378T G28881T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_549168
 2020-07-13 2020-09-28
 Norway hCoV-19/Norway/2893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9130T C14408T A23403G T27319C G28487A C28868T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549172
 2020-07-13 2020-09-28
 Norway hCoV-19/Norway/2904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3055C C6027T T13626G C14408T A16734G A20268G A23403G G24794T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556553
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/CAMC-947875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25699T GGGG28881AACT C28896T C29738T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556658
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94665E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20268G C21859Y C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556672
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9463EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11074Y G11083T C14408T A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556705
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94658E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556708
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945F54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C C9474T G10097A A12772G C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556729
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945B05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T C9430T A10978T G11083T C14408T G16475A C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556737
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948B8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C14408T T20653C C21637T A23403G G24368T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556749
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9457B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C14408T T20653C C21637T A23403G G24368T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556774
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556790
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C853T C3037T C5482T C14408T G17944T G18186T C18747T A22182G A23403G GGG28881AAC G29468K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556799
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94BB1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556806
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94BA02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556922
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9467A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C19269T A23403G C23655T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556982
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/CAMC-944F19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A A11782G C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557178
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-80D1BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6285T C10645Y -11072TTC C12974T C14220T C14408T T19893C A23403G C24370T C25728T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557205
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-80E811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G26020K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557242
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-820C4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G15372C T16374C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557534
 2020-07-13 2020-09-28
 United Kingdom hCoV-19/England/MILK-869832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C4752T G8027T A10797C C14408T C19524T T19839C G22468T A23403G C25117T C25511T C25546A C28866T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560977
 2020-07-13 2020-09-30
 Sweden hCoV-19/Sweden/20-08929/2020
 C241T C3037T C6606T G6884T A7444G C9430T G13390A C14408T T20424C A22019G A23403G A23851G G25459T C26022T C26447T GGG28881AAC C28887T C29739A G29764T

EPI_ISL_562667
 2020-07-13 2020-09-30
 Australia hCoV-19/Australia/VIC8867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562919
 2020-07-13 2020-09-30
 Australia hCoV-19/Australia/VIC10461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C1609T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_562931
 2020-07-13 2020-09-30
 Australia hCoV-19/Australia/VIC10490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562947
 2020-07-13 2020-09-30
 Australia hCoV-19/Australia/VIC10527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A6248G T7540C T9124C C11494T C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563328
 2020-07-13 2020-09-30
 Australia hCoV-19/Australia/VIC11320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T C19274Y G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563504
 2020-07-13 2020-09-30
 Australia hCoV-19/Australia/VIC11997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22403R C22480T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563512
 2020-07-13 2020-09-30
 Australia hCoV-19/Australia/VIC12037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T C19274Y G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_563523
 2020-07-13 2020-09-30
 Australia hCoV-19/Australia/VIC12104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C9603T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563528
 2020-07-13 2020-09-30
 Australia hCoV-19/Australia/VIC12137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22335K A22407W G22442K C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563533
 2020-07-13 2020-09-30
 Australia hCoV-19/Australia/VIC12169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C12459Y C13011T C14408T G16647T C18555T A20437G G22409K G22992A G23401A A23403G C25515T GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_564118
 2020-07-13 2020-09-30
 Australia hCoV-19/Australia/VIC6891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T T18083Y C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564273
 2020-07-13 2020-09-30
 Australia hCoV-19/Australia/VIC7192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T A15892R G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564282
 2020-07-13 2020-09-30
 Australia hCoV-19/Australia/VIC7207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T G2778A C3037T T7540C T12598K C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T C23996Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565705
 2020-07-13 2020-09-30
 Australia hCoV-19/Australia/VIC9772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25546T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568564
 2020-07-13 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C8917T C14408T C18167T G21518T A23403G GGG28881AAC G28975T G29737R TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_569007
 2020-07-13 2020-10-02
 France hCoV-19/France/IHU-0955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T TGGTCATGTTATGGT508- A2097T T2537C C2710T C3037T G11221T C14408T A18777G A23403G C23802T T27299C C27923T GGG28881AAC T29148C TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569008
 2020-07-13 2020-10-02
 France hCoV-19/France/IHU-0956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G G22894A A23403G C25886T C27371T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569009
 2020-07-13 2020-10-02
 France hCoV-19/France/IHU-0957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569010
 2020-07-13 2020-10-02
 France hCoV-19/France/IHU-0958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C3505T C14408T A20268G G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569011
 2020-07-13 2020-10-02
 France hCoV-19/France/IHU-0959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569012
 2020-07-13 2020-10-02
 France hCoV-19/France/IHU-0962/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C186T C241T C3037T G3053A C12115T C14408T C15738T C17639T T19839C G20002T A23403G G27842A GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569015
 2020-07-13 2020-10-02
 France hCoV-19/France/IHU-0965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3602T C10582T C14408T A23403G G25552C G25563T G25621T C27476T C27804T C28830A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT919781
 2020-07-13 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-4837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C539T C3037T C8818T A10912G C14408T G17347T T21198C C22120T A23403G GGG28881AAC G29540T A29735G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MT937820
 2020-07-13 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C936T C3037T G3259T C14408T G21641T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT947575
 2020-07-13 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2748/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T C17750T C18486T A20268G C21614T T22162C C23029T A23403G G27505A G28798A C28854T C29743T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT968072
 2020-07-13 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4226/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MT968073
 2020-07-13 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4227/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MW023514
 2020-07-13 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1315/2020
 ATTAAAGG1- C1059T C3037T C5547T C10319T C14408T G16710T G20176T A23403G T24274C A25121T G25563T C27964T AACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29767-

EPI_ISL_497785
 2020-07-14 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T G22661T A23403G G26660T C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_497869
 2020-07-14 2020-07-25
 China hCoV-19/Hong Kong/HKU-200723-102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498073
 2020-07-14 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0527/2020
 ATTAAAGGT1- G174T C241T C3037T C3165T C7279T C9857T C14408T C15342T G15406T C21742T A23403G A23920G A26530G G27561T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_498075
 2020-07-14 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T T1863A C3037T C7843T C14408T A20268G C20384T G21586T A23403G G26144A C29535T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_498077
 2020-07-14 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7528T C14408T G15850T G16236A A20268G G21586T A23403G G24620T G26144A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_498079
 2020-07-14 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7945T T12503C C14408T A15936T A23403G GGG28881AAC G28975T C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_498082
 2020-07-14 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0540/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T G6421T T12503C C14408T A23403G GGG28881AAC C29721T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_498086
 2020-07-14 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A7064G C14408T C19011T C20429T C22675T A23403G A23938G C23997T G25767T C26586T T27384C GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_498090
 2020-07-14 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0551/2020
 ATTAAAGGTT1- C241T C3037T G11447A C14408T C22675T A23403G G28621T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_498091
 2020-07-14 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0552/2020
 ATT1- C241T C3037T G11447A C14408T C22675T A23403G A25505T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_498092
 2020-07-14 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T G11447A C14408T C22675T A23403G A25505T GGG28881AAC AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_498096
 2020-07-14 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0557/2020
 ATTAAAGG1- C241T C3037T C4002T G10097A C13536T C14408T C18747T G19272T A22125T A23403G C23731T GGG28881AAC G29425T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_498098
 2020-07-14 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C6762T A9439G T12503C C14408T G16207T T16728C A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498104
 2020-07-14 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0565/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C4002T T8323C G10097A C13536T T14345C C14408T T15437C G18292T A23403G C23731T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_498109
 2020-07-14 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C22675T A23403G G23868T G24794T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498111
 2020-07-14 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0573/2020
 ATTAAAGGTTT1- C241T T2506C C3037T C6762T A9439G T12503C C14408T G22203T A23403G G25770T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_498549 MT876606
 2020-07-14 2020-07-27
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_290/2020
 T205C C241T A1163T C3037T A10323G C14408T C21998T A23403G C27199T GGG28881AAC

EPI_ISL_498593
 2020-07-14 2020-07-27
 Singapore hCoV-19/Singapore/695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACG1- C241T C2623Y C3037T C8917T G9389A G9802K C14408T T19538C G21974T C22480T A23403G C25658T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_498816 MT847222
 2020-07-14 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_288/2020
 C241T C3037T C14408T T15585A C15613T C18877T C22444T A23403G A24062G G25494T G25563T C26735T T27484C C28854T

EPI_ISL_499266
 2020-07-14 2020-07-28
 United Kingdom hCoV-19/England/NOTT-112D7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G160T C241T C3037T C14408T C20148T A21137G A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499809
 2020-07-14 2020-07-28
 United Kingdom hCoV-19/England/NOTT-112D6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G160T C241T C3037T C14408T C20148T A21137G A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501895
 2020-07-14 2020-07-31
 Latvia hCoV-19/Latvia/082/2020
 C241T G1493A C1912T G1979A C3037T C14408T A15337G C15981T T19839C A23403G GGG28881AAC C28905T C29721A

EPI_ISL_504177 MT847215
 2020-07-14 2020-08-01
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_287/2020
 C241T C3037T T4579A C5296T C14408T A23403G A24062G G25494T G25563T C26735T GGG28881AAC

EPI_ISL_509175
 2020-07-14 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14424G G18880T T19839C A23403G GGG28881AAC

EPI_ISL_509176
 2020-07-14 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3695T C5822T C10319T C14408T A18424G C21304T C21811T A23403G G25563T G25907T C27964T C28472T C28869T

EPI_ISL_509181
 2020-07-14 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8974T C14408T A20268G C20759T A23403G T24076C C28854T AAA29901-

EPI_ISL_509182
 2020-07-14 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2724T C3037T A8974T C14408T A20268G C20759T A23403G T24076C C28854T

EPI_ISL_509183
 2020-07-14 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G640A C3037T C8139T C10376T C14408T T22287C A23403G A25336T GGG28881AAC

EPI_ISL_509186
 2020-07-14 2020-08-05
 United States hCoV-19/USA/WA-OHSU-1345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A808T C3037T C8818T C14408T C15952T G20980A A23403G TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509265
 2020-07-14 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K000613/2020
 ATTAAAGGTTT1- C241T G602A G2945A C3037T A3754C C4276T C6762T T12503C C14408T C19011T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509309
 2020-07-14 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001051/2020
 ATTA1- C241T C2676T C3037T G3250T G5150T C8318A T12503C C14408T C18166T A23403G A27690T GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_509310
 2020-07-14 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001052/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C6762T T12503C C14408T A23235G A23403G C25487T G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509324
 2020-07-14 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001068/2020
 ATTAA1- C241T C3037T C3874T C4002T G10097A C13536T C14408T C17678T C18747T A23403G C23731T GGG28881AAC G29425T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_509326
 2020-07-14 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001072/2020
 ATTAAAGGTTTA1- C241T C2676T C3037T T12503C C14408T A23403G GGG28881AAC C29721T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_509327
 2020-07-14 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001073/2020
 ATTAAA1- C241T C3037T T12503C C14408T T18669C C23086T A23403G A23614G G24794T GGG28881AAC C29721T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_509328
 2020-07-14 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T C5346T G10097A C13536T C14408T C18747T A23403G C23731T CA28253TC GGG28881AAC G29425T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509361
 2020-07-14 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001115/2020
 ATTA1- C241T C1059T C3037T C3511T G4300T A10323G C14408T G15438T C22591T A23403G G25563T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_509384
 2020-07-14 2020-08-05
 Singapore hCoV-19/Singapore/774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3951G C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T C29719T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509522
 2020-07-14 2020-08-05
 Australia hCoV-19/Australia/NSW2530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8950T C14408T G16647T C18555T C19170T C22480T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509783 MT846480
 2020-07-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T G368A C1059T C2536T C3037T C10376T C14408T C14931T A23403G C24082T G25563T C27005T A28880G C29363T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509784 MT846481
 2020-07-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C4993T C10319T C14408T G16710T C16733T G20176T A23403G A25121T G25563T C27964T ATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAAT29725- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509786 MT846483
 2020-07-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0728/2020
 ATTAAAG1- C241T C815T C3037T C3411T C5365T C5544T T10795C C14408T C18452T C20428T A23403G G25437T C26195T C28657T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_509787 MT846484
 2020-07-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0729/2020
 AT1- C241T C3037T C12924T C14408T C23185T A23403G C25156T G27598A C27679T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509788 MT846485
 2020-07-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0730/2020
 ATTAAAGGTT1- C222T C241T C1218T C2706T C3037T C12488T C14408T G15543T C18877T G21800T A23403G G25563T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_509789 MT846486
 2020-07-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1625T T2620C C3037T C10319T C14408T G16710T G20176T A23403G T24376C A25121T G25563T C27964T C28603T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509792 MT846489
 2020-07-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C21306T A23403G G25563T G26690T C28087T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509793 MT846490
 2020-07-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0735/2020
 ATT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C21306T A23403G G25563T G26690T C28087T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509794 MT846491
 2020-07-14 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0736/2020
 A1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C21306T A23403G G25563T G26690T C28087T

EPI_ISL_509875 MT846561
 2020-07-14 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9050T G11083T C14408T C14599T C14724T G15732T C16338T T19143C A20268G G22918T A23403G C25350T G25776T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509877 MT846563
 2020-07-14 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21707T A23403G C23557T C24130T C25267T G25563T G26690T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509881 MT846567
 2020-07-14 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3403T G13201T C14408T G19542T A23403G C23551T G25563T C26527T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509884 MT846570
 2020-07-14 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-882/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G A25048T G25563T C26625T C29095T C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509890 MT846576
 2020-07-14 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509891 MT846577
 2020-07-14 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510447
 2020-07-14 2020-08-06
 Spain hCoV-19/Spain/COV006118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1087R C3037T T4923A C5784T C14408T A20268G C21846T T22297C A23403G C27982T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510706 LR882176
 2020-07-14 2020-08-07
 Switzerland 200017
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C683T C1884Y C3037T C7006M C9286T C14408T G16935T T17675Y C19763T G21123T A23403G C25037T A27400C G28321T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510707 LR882170
 2020-07-14 2020-08-07
 Switzerland 200018
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T T5344Y A5563R G9130T C14408T C16111T A16210W A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510708
 2020-07-14 2020-08-07
 Switzerland hCoV-19/Switzerland/200019_593_C11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T G9130T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510709 LR882173
 2020-07-14 2020-08-07
 Switzerland 200020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1449T C3037T G3114S T3144K C6883M T6962Y G7027R C7072Y T9421C G10265A C14408T G15226A A15972G C19718T A23403G G23621A A25966G C27881T T28759C GGG28881AAC G29778A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510710 LR882172
 2020-07-14 2020-08-07
 Switzerland 200021
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G596K C620Y C1449T C3037T G5374R C5512Y A5563R G7067K T7217Y T9421C G10265A C14408T G15043K A15052W T15087K T15117W A15171W G15226A A15972G C19718T A23403G G23621A A25966G C27881T T28759Y GGG28881AAC G29778A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510711 LR882175
 2020-07-14 2020-08-07
 Switzerland 200022
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A3019M C3037T C3096Y C4002T G5950K T6914Y G10097R C13536T C14408T G19732T A23403G C23731T G26634T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510712 LR882177
 2020-07-14 2020-08-07
 Switzerland 200023
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T C5540M G9130T T10076W C14408T C16111T C21646Y A23403G A27200W T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510713
 2020-07-14 2020-08-07
 Switzerland hCoV-19/Switzerland/200024_595_C12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2909M G2993K C3037T A3550W T3592K C3597Y G3770S A5341R A5382W G5532K C6525T A6889W T6933Y G9130T C14408T A23403G T27319C G28487A C28868T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510714 LR882168
 2020-07-14 2020-08-07
 Switzerland 200025
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T238Y C241T C313T A604R GC980RM C1912T T2949Y AG2961RK C3037T G3056R T3144K G5018R T5327W T5360K ACAA5868WYRW C5934Y A6875W T6942K T6945K A8527R C9286T C10252T T11027Y C11130M A11206W G12907K C13517Y C13862Y C14178T C14408T T15244Y C15600Y A16210W C19763T A22101R T22588Y A23403G C23683T G26172S G26596K T27050W C27352M A27678W GGG28881AAC C29441M C29835T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510715 LR882174
 2020-07-14 2020-08-07
 Switzerland 200026
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T T6945Y T6976W T7035W G9130T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510716 LR882171
 2020-07-14 2020-08-07
 Switzerland 200027
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C346T C461Y C486M A563R C620Y A642M C2113T C3037T G3047K A3054R C3458M A3744R C3832Y G5036S C5090Y G5195R A5563R T5925K T6004Y C6040T C7765T C8579M C9967Y T10076W G11417T G11521T C13323M C14408T C15457Y A16210W A16233R T16284K A16341W G16846T C17012M C17690Y G17749K G17754S T17773Y T17778W C18877Y T19198Y C20091Y C20233Y C20926Y C21233M A21834W C21903M G22104R A23403G G24098K G25563T G27364K C27434M C28253Y A28959G C29484Y C29489Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510717 LR882180
 2020-07-14 2020-08-07
 Switzerland 200028
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T2984Y T3022Y C3037T T3124Y C3738T G9130T C14408T C16111T T17675Y A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510718
 2020-07-14 2020-08-07
 Switzerland hCoV-19/Switzerland/200029_597_A09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C635Y T2116G T2955Y C3037T C3096Y C8917T G9389A C14408T T17675Y G21898T A23403G C24023T C26681T G28300C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510719 LR882179
 2020-07-14 2020-08-07
 Switzerland 200030
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T A3116W T3144K A3765W C9286T T10076W C14178T C14408T G17561R C19763T A23403G GGG28881AAC C29750T C29835T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510720 LR882178
 2020-07-14 2020-08-07
 Switzerland 200031
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A3084R C14408T T18471C C18526T C21997Y A23403G C25498T C28139T C28833T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510743 LR882210
 2020-07-14 2020-08-07
 Switzerland 200061
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3541Y T3598W A3647R G3685S G5156K A5510R T5521W A5563R C6573Y T7020Y C10833T C14408T C15324T A16210W C16255Y C16394Y A17495W C21614Y C23086Y T23105W A23122M A23403G G28747T G28917T G29543T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510746 LR882203
 2020-07-14 2020-08-07
 Switzerland 200065
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C1912T C3037T T6376C C9286T C10252T C11962T C14178T C14408T G17562T C19763T A23403G T23455Y GGG28881AAC C29835T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512356
 2020-07-14 2020-08-11
 United Kingdom hCoV-19/England/NORT-293B4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28077T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512359
 2020-07-14 2020-08-11
 United Kingdom hCoV-19/England/NORT-293B96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C5184T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC C29445T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512361
 2020-07-14 2020-08-11
 United Kingdom hCoV-19/England/NORT-293BF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512510
 2020-07-14 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169796/2020
 ATTA1- C241T C3037T T3049C C14408T T15555C G21624T A23403G G27877T A28523G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_512648
 2020-07-14 2020-08-11
 Latvia hCoV-19/Latvia/093/2020
 C241T C3037T C4570T C5832T C6781T C11455T C14408T G15751T T16254C T19839C A23403G GGG28881AAC C28905T

EPI_ISL_514223 MT890356
 2020-07-14 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0877/2020
 AT1- C241T C1288T G1298A C3037T C5548T C14408T T15294C C18877T A23403G G25445T G25563T G28851T G29254T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514224 MT890357
 2020-07-14 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0878/2020
 AT1- C241T C1288T G1298A C3037T C5548T C14408T T15294C C18877T A23403G G25445T G25563T G28851T G29254T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_514225 MT890358
 2020-07-14 2020-08-14
 United States SARS-CoV-2/human/USA/FL-BPHL-0879/2020
 A1- C241T C2416T C3037T C14408T C16616T A23403G A25201G G25563T C26885T C27603T C28887T C29774T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_514425 MT883503
 2020-07-14 2020-08-14
 Serbia SARS-CoV-2/human/SRB/KV08-15-07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1551T C3037T G10265A C12525T C13424T C14408T A15972G C19718T A23403G A23674G C26111T G28077T C28674T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514429 MT883504
 2020-07-14 2020-08-14
 Serbia SARS-CoV-2/human/SRB/NP07-15-07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1722T C3037T G10265A C14408T C15720T A15972G C18452T C19718T A23403G C24213T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515055
 2020-07-14 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T T28009C G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515059
 2020-07-14 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4052A C10029T C10449T C14408T C19718T T19839C C21646T A23403G C26846T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515068
 2020-07-14 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515073
 2020-07-14 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4052A C10029T C10449T C14408T C19718T T19839C C21646T A23403G C26846T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515589
 2020-07-14 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002190/2020
 ATTA1- C241T C3037T T7012A C14408T C19402T A23403G G28326T GGG28881AAC C29280T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_515597
 2020-07-14 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002199/2020
 A1- C241T T490A C3037T C9857T C14408T A23403G A23920G A26530G G27561T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515703
 2020-07-14 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002327/2020
 A1- C241T C3037T C6762T T12503C C14408T A23403G G25770T G28703T GGG28881AAC A28959G C29721T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_515732
 2020-07-14 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002364/2020
 AT1- C241T C3037T C6762T A9439G C12367T T12503C C14408T C20115T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_516429
 2020-07-14 2020-08-20
 North Macedonia hCoV-19/North Macedonia/7229/2020
 ATTA1- C241T C3037T C3130T C5784T C9810T C12754T C14408T G19735T G19962T A23403G A23636T C28153T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_516430
 2020-07-14 2020-08-20
 North Macedonia hCoV-19/North Macedonia/7245/2020
 A1- C241T C313T C1938T C3037T C6651T C10747T C14408T T17812C G22021T G22203T A23403G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_516648
 2020-07-14 2020-08-21
 Ecuador hCoV-19/Ecuador/USFQ-161/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C6363T C9866T C14408T A14747G A20755C A23403G C25480T G25563T A27763G A29903-

EPI_ISL_516649
 2020-07-14 2020-08-21
 Ecuador hCoV-19/Ecuador/USFQ-162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_516772
 2020-07-14 2020-08-22
 United States hCoV-19/USA/SC-20-1597-T14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_516775
 2020-07-14 2020-08-22
 United States hCoV-19/USA/SC-20-1615-T14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T G10262T C10319T A11411G C14408T G18951T G19656T A23403G G25563T C27964T G28881T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_517659
 2020-07-14 2020-08-24
 Suriname hCoV-19/Suriname/SR-48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C15324T C16193T C18060T C21707T A22404T C22450T A23403G C28253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518047
 2020-07-14 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T A7064G C7093T G8000T C14408T C22675T A23403G T27384C G28347T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518051
 2020-07-14 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002472/2020
 A1- C241T C3037T G5425T A8086C C9451T C14408T A20268G A23403G C26058T T26975C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_518219 MT973271
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518220 MT973272
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G20247T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518223 MT973275
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6226/2020
 ATTAAAGGTTTATAC1- A27G C241T A1163T G2036T G2604T C3037T G3564T T7540C G11535T G13571T C14408T G16647T C18555T G22992A G23401A A23403G G24933T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518911 MT970688
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518912 MT970689
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC T29840Y

EPI_ISL_518913 MT970690
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518915 MT970697
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518917 MT970705
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518950 MT970495
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518955 MT970476
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_518956 MT970477
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A18504G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518960 MT970483
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC

EPI_ISL_518961 MT970456
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_518962 MT970478
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_518964 MT970490
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C25433T GGG28881AAC

EPI_ISL_518965 MT970491
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C7113T T7540C C14408T G16647T C18555T G18910T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518979 MT970516
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17649T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519061 MT970838
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4673/2020
 ATTAAAGG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519068 MT970845
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519074 MT970853
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519101 MT970900
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4713/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519102 MT970901
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22498T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519104 MT970904
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519105 MT970905
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519106 MT970906
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4718/2020
 ATTAAAGGTT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519109 MT970910
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4721/2020
 ATTAAAGGTTTA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519112 MT970914
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4724/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519118 MT970920
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519119 MT970921
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519122 MT970925
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14346T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519124 MT970927
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C4345T T7540C C14408T G16647T C18555T A19659G C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519126 MT970929
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519127 MT970930
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T490C A1163T C3037T C7600T G7798T C11931A C14408T A23403G T23548C GGG28881AAC

EPI_ISL_519131 MT970937
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C560T A1163T C3037T C5259T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519132 MT970938
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C560T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519134 MT970940
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G11083T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519136 MT970943
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519169 MT971001
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G G28703C GGG28881AAC

EPI_ISL_519173 MT971010
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4787/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519175 MT971013
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519178 MT971019
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4792/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519193 MT970902
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519234 MT971018
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519280 MT972861
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T C21997T G22992A G23401A A23403G C26447T GGG28881AAC

EPI_ISL_519282 MT972863
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519283 MT972864
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519284 MT972865
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23413T GGG28881AAC

EPI_ISL_519285 MT972866
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4909/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T C15342T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519286 MT972867
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519287 MT972868
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4911/2020
 ATTAAAGGTTT1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519288 MT972869
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519290 MT972871
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4914/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519295 MT972876
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C14805T G16647T C18555T G22992A G23401A A23403G C23709T G24449T G26257C GGG28881AAC

EPI_ISL_519296 MT972877
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T A7358G T7540C C14408T C14805T G16647T C18555T G22992A G23401A A23403G C23709T G24449T G26257C GGG28881AAC

EPI_ISL_519297 MT972878
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13536T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519298 MT972879
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4924/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519300 MT972881
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3738T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519302 MT972883
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519303 MT972884
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519304 MT972885
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4930/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519305 MT972886
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4931/2020
 ATTAAAGGTTTATACCTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22295T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519307 MT972888
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519308 MT972889
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_519309 MT972890
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4935/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27765T GGG28881AAC

EPI_ISL_519310 MT972891
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C25889T GGG28881AAC

EPI_ISL_519312 MT972893
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519313 MT972894
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519314 MT972895
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4940/2020
 ATTAAAGGTTTATAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28647T GGG28881AAC

EPI_ISL_519317 MT972898
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC C29837T

EPI_ISL_519318 MT972900
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519324 MT972906
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13957T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519325 MT972907
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T C15613T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519326 MT972899
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4958/2020
 ATTAAAGGTT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519333 MT970644
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519334 MT970648
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A1381T C3037T G3114T C6196T T7540C A12898G C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519348 MT970332
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519350 MT970334
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19263T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519352 MT970335
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519371 MT970064
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519384 MT970063
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G5230T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519468 MT970406
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519472 MT970410
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C1514T C3037T T7540C C9246T C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519473 MT970411
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC G29705T

EPI_ISL_519474 MT970412
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519481 MT970419
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T G3114T C4276T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519484 MT970422
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519485 MT970423
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519503 MT970440
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519506 MT970443
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519534 MT970521
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_519535 MT970522
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519537 MT970524
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A6248G T7540C G13571T C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519538 MT970525
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C26586T GGG28881AAC

EPI_ISL_519556 MT970549
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4228/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C28657T GGG28881AAC

EPI_ISL_519557 MT970550
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519580 MT970586
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519608 MT970632
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519609 MT970633
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4281/2020
 ATTAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519610 MT970634
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519611 MT970635
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519612 MT970637
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519614 MT970641
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519615 MT970642
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519616 MT970643
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519639 MT970630
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519641 MT970636
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519645 MT970645
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519646 MT970646
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519647 MT970647
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519648 MT970649
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519649 MT970650
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519655 MT970660
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519663 MT970446
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519670 MT970453
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519673 MT970487
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T6199C T7540C C12513T C14408T G16647T C18555T C22480T G22992A G23401A A23403G TCTCTATCTTTA25707- GGG28881AAC

EPI_ISL_519674 MT970488
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519676 MT970492
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26447T GGG28881AAC

EPI_ISL_519677 MT970493
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519678 MT970494
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26447T GGG28881AAC

EPI_ISL_519680 MT970675
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G20670T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519681 MT970676
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28909T

EPI_ISL_519682 MT970677
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C25638T GGG28881AAC

EPI_ISL_519683 MT970678
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28909T

EPI_ISL_519691 MT970686
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519692 MT970687
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519693 MT970691
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519694 MT970692
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G G25922T GGG28881AAC

EPI_ISL_519695 MT970693
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14220T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519696 MT970694
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519698 MT970698
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519699 MT970699
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519700 MT970700
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519702 MT970703
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2340T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519703 MT970704
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519704 MT970706
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519705 MT970707
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A23418G GGG28881AAC C28961T

EPI_ISL_519706 MT970708
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519707 MT970710
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519708 MT970711
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519709 MT970712
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519786 MT970672
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4087G T7540C T10520C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519795 MT970551
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519801 MT970561
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29358T

EPI_ISL_519807 MT971032
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520521 MT970057
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520522 MT970056
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T T1570C C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_520525 MT970058
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2522G C3037T C6145T T7540C C14408T C16580T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_520526 MT970062
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520527 MT970060
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520528 MT970061
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520529 MT970059
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T C5301T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GAT27382CTC GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_520559 MT970222
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G4904T A5353G T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G A28624G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520605 MT970264
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G61T C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520613 MT970273
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520620 MT970284
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T C19151T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520624 MT970199
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520648 MT970347
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T C5284T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520653 MT970289
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520654 MT970339
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C7735T C14408T G16647T C18555T G22992A G23401A A23403G C26078T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_520655 MT970340
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3944/2020
 ATTAAAGGTT1- T13C C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_520656 MT970341
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C14616T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_520661 MT970346
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29376T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_522505
 2020-07-14 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2726/2020
 ATTAA1- G8A T11G C241T C3037T C4039T C14408T G16808A C19983T C21575T A23403G GGG28881AAC G28899T G29810T

EPI_ISL_522509
 2020-07-14 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2730/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C9142T C11916T C14408T C16650T A20675T A23403G G25563T C26942T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_522510
 2020-07-14 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2731/2020
 ATTAAAGGTT1- C241T C882T C3037T C6990T G9526T C14408T G15444T G16741T C18877T A23403G G25563T C25710T C26735T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_522511
 2020-07-14 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2732/2020
 ATTAAAGGTTTATAC1- G219T C241T T2886C C3037T T7582C A11144G C14408T A23403G T23965C GGG28881AAC ACAAAAAAAAAAAAAA29869-

EPI_ISL_523076
 2020-07-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-23-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C13671T C14408T C22916A T23018C A23403G G25563T T26047G G27261T C28535A C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523077
 2020-07-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-23-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C13671T C14408T C22916A T23018C A23403G G25563T T26047G G27261T C28535A C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523078
 2020-07-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-23-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C13671T C14119T C14408T C22916A T23018C A23403G G25563T T26047G G27261T C28535A CAGCGTTCTTCGGAATGTCGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCATATTGACGCATACAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAGAAGGCTGATGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCCTGCTGCAGATTTGGATGATTTCTCCAAACAATTGCAACAATCCATGAGCAGTGCTGACTCAACTCAGGCCTAAACTCATGCAGACCACACAAGGCAGATGGGCTATATAAACGTTTTCGCTTTTCCGTTTACGATATATAGTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGATGTAGTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29208-

EPI_ISL_523079
 2020-07-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-23-4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C13671T C14408T C22916A T23018C A23403G G25563T T26047G G27261T C28535A C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523080
 2020-07-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-23-5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T G11083T C11109T G12794A C13671T C14408T C22916A T23018C A23403G G25563T T26047G G27261T C28535A C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523081
 2020-07-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-23-6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C13671T C14408T C22916A T23018C A23403G G25563T T26047G G27261T C28535A C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523082
 2020-07-14 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-23-7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C13671T C14408T C22916A T23018C A23403G A25351T G25563T T26047G G27261T C28535A C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523731
 2020-07-14 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C622T C3037T G4657T T5182C C11758T C13059T C14408T C15324T G16846T C16887T C18744T A23403G C25075T C25904T C29733T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524885
 2020-07-14 2020-08-28
 United States hCoV-19/USA/MD-MDH-0158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T G2962T C3037T C6543T A8558G C14408T C16260T A23403G C23635T T24364A C24767T G25088T G25563T C28821A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_524886
 2020-07-14 2020-08-28
 United States hCoV-19/USA/MD-MDH-0159/2020
 A1- A4T C241T A427G A459C C683T C3037T T9172C C9430T A10948G C14408T T23341C A23403G C25916T G26730T C28849T GGG28881AAC A29866C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_524888
 2020-07-14 2020-08-28
 United States hCoV-19/USA/MD-MDH-0161/2020
 ATTAAAGG1- C241T G521T C3037T C8727T T9172C A10948G C14408T A23403G C24099T C25820T G26730T C28045T C28163T GGG28881AAC

EPI_ISL_524889
 2020-07-14 2020-08-28
 United States hCoV-19/USA/MD-MDH-0162/2020
 ATT1- A12- G174T C241T T833C C1059T G1658T C2976T C3037T C7765T C9430T A13712G G14371T C14408T C23191T A23403G G25563T C27964T C28887T

EPI_ISL_524890
 2020-07-14 2020-08-28
 United States hCoV-19/USA/MD-MDH-0163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C10138T G10618T C14184T C14408T C16260T G22017T G22427A A23403G G25563T C28821A G29440T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_525725
 2020-07-14 2020-09-01
 United States hCoV-19/USA/WA-S2735/2020
 ATTAAAGGTTTA1- C241T C3037T T6007C A10616C C14408T C15933T G16968T C19263T T19839C A23403G C26873T C27972T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_526294
 2020-07-14 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97BDF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526295
 2020-07-14 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97BFA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526296
 2020-07-14 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97BFBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G25775T C27807T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526298
 2020-07-14 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97BFFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G25775T C27807T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526300
 2020-07-14 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97C367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526301
 2020-07-14 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97C385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G25775T C27807T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526384
 2020-07-14 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A9670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T T1052Y C3037T C3486A C3653T C14408T A23403G C25624T GGG28881AAC C29870A

EPI_ISL_527585 MT958217
 2020-07-14 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_527586 MT958218
 2020-07-14 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_527587 MT958219
 2020-07-14 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C12025T C12357T G14316T C14408T T19839C C21928T A23403G C23707T T24631C C26110T GGG28881AAC C29769T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527588 MT958220
 2020-07-14 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_527589 MT958221
 2020-07-14 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1524/2020
 ATTA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_527590 MT958222
 2020-07-14 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_527591 MT958223
 2020-07-14 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1526/2020
 ATTA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_527592 MT958224
 2020-07-14 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_527593 MT958225
 2020-07-14 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_527642
 2020-07-14 2020-09-04
 United States hCoV-19/USA/AR-CDC-4253/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T A29147G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528823
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-W842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T C2325T G2776A C3037T G4354A C6573T T6842G A12547T C14408T T17268G AA21550CT A22171T A23403G C24865T C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528827
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-W855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G3774A G4354A C5700A C9693T C10815T C14408T C19170T A21550C A23403G C25416T C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528828
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-W863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T T3835C C4570A C5700A C9693T C10815T C14408T C16626T C19170T A23403G C24133T GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528831
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-W897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G185A C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T G19947T AA21550CT A23403G C28214T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528833
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-W900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G4354A C6573T C8327T G11083T C14408T C17304T AA21550CT A23403G C25528T T26677C GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528834
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-W903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T G11417T C14408T C16260T G16269A AA21550CT C21846T A23403G C25521T G25563T C28821A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528835
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-W908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G4354A C6573T C8327T G11083T C14408T C17304T A23403G C25528T T26677C GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528838
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-W990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G185T C241T C313T C3037T C5700A T9145C C9693T C14408T C16626T A23403G G23593T G25996T C27331T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528839
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-W996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A143G C241T C3037T G3774A G4354A C6573T GG7115AA C7390T G11083T C11606T C14408T C19707T A23403G C25528T C25693T C28770T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528840
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-W998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A235T C241T C313T A939G C3037T C4345A C5700A C9693T C10815T C14408T T14565A C16626T C19186T AA21550CT A23403G C27532T C27849T C28057T GGG28881AAC G29474T G29736T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528841
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2842T C3037T G4354A C6573T C9050T C10340T C14408T C18029T G21770T A23403G C25528T C26335T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528851
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T T4708C C5700A T9145C C9693T C14408T AA21550CT A23403G G23593T C25160T C27331T C28087T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528852
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T A4372G C5700A C9693T A11947G C13426T C13487T C14408T C16626T A23403G GGG28881AAC C29686T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528853
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G185T C241T C313T C3037T T4708C C5700A T9145C C9693T C14408T C16626T A23403G G23593T C25160T G25996T C27331T C28087T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528854
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T A4372G C5700A C9693T G13723T C14408T C16626T G19947T A23403G G23873T G27762C GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528855
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T A4372G C5700A C9693T A10152G C14408T C16626T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528856
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T A4372G C5700A C9693T A10152G C14408T C16626T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528858
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G4354A C6573T C11208T C14408T A15828C AA21550CT C22713T A23403G C25528T C25961T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528859
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G4354A C6573T C11208T C14408T A15828C AA21550CT C22713T A23403G C25528T C25961T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528861
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C5700A C9693T C14408T C17125T AA21550CT A23403G C25587G T25715C C27874T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528862
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G1880A C3037T G4354A C6573T C14408T A23403G A25381C C25528T C28087T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528863
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G185T C241T C313T C3037T T4708C C5700A T9145C C9693T C14408T C16626T AA21550CT A23403G G23593T C25160T G25650T G25996T C27331T C28087T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528864
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C4206T C5700A C9693T C10815T C11020T C14408T C16626T C19170T AA21550CT A23403G G28681T GGG28881AAC G29474T C29754T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528865
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1348T C3037T G4354A C6573T C14408T T15939C AA21550CT G22225T A23403G C25528T G26730C GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528868
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G3774A G4354A C6573T G7798T C14408T C21304T AA21550CT A23403G C25528T C25693T C27999T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528869
 2020-07-14 2020-09-09
 India hCoV-19/India/TG-CCMB-X94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G4354A G6077T C6573T C14408T AA21550CT A23403G C25528T C25638A G26730C GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529557
 2020-07-14 2020-09-10
 United Kingdom hCoV-19/England/ALDP-983822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T G25186T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529591
 2020-07-14 2020-09-10
 United Kingdom hCoV-19/England/BIRM-60DCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189A C241T C3037T A4297G A4762G A5040G C14408T A23403G C23638T AG28877TC GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529592
 2020-07-14 2020-09-10
 United Kingdom hCoV-19/England/BIRM-60DE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189A C241T C3037T A4297G A4762G A5040G C14408T A23403G C23638T AG28877TC GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529593
 2020-07-14 2020-09-10
 United Kingdom hCoV-19/England/BIRM-60E04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189A C241T C3037T A4297G A4762G A5040G C14408T A23403G C23638T C24616T AG28877TC GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529594
 2020-07-14 2020-09-10
 United Kingdom hCoV-19/England/BIRM-60E13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189A C241T C3037T A4297G A4762G A5040G C14408T A23403G C23638T AG28877TC GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529595
 2020-07-14 2020-09-10
 United Kingdom hCoV-19/England/BIRM-60E7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A15187G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529666
 2020-07-14 2020-09-10
 United Kingdom hCoV-19/England/HECH-259A54D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189A C241T G598A C3037T A4297G A4762G A5040G C14408T A23403G C23638T C26022T AG28877TC GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532984
 2020-07-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-761D5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1264T C3037T T7767C C8047T G9130K C11036T C14408T C17104T A20268G A21499G C22879A A23403G C23604T C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532987
 2020-07-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-75F40F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C11152T C14408T T17742C A23403G C26058T GGG28881AAC A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532995
 2020-07-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-75F0B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G8353A C8950T G10097A C13536T C14408T G19009T C22350T A23403G C23731T ACGTGCCAG27624- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533014
 2020-07-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-78D918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19951T A23403G C26058Y GGG28881AAC C29199Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533038
 2020-07-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-7A4C03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C7765T G10097A C12473T C12534T C13536T C14408T C21156A A23403G G23593T C23731T C26151T C28846T GGG28881AAC G28908T G29000T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533060
 2020-07-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A4BBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2511T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533083
 2020-07-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-784B1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G25775T C27807T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533105
 2020-07-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79AE46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T GTCATGTTA510- C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533143
 2020-07-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-77B82F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C5621T G9479T C14408T A20288C A23403G G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533151
 2020-07-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-7A4ACD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533221
 2020-07-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-77B722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C5621T G9479T C14408T A20288C A23403G G28476T C28511T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534226
 2020-07-14 2020-09-11
 Sweden hCoV-19/Sweden/20-08934/2020/P1
 C241T G1466A C3037T C3784T G5665A G6349T C8683T G11053T T12142C C14408T A23403G C24023T G25340T T25830C GGG28881AAC

EPI_ISL_534227
 2020-07-14 2020-09-11
 Sweden hCoV-19/Sweden/20-08935/2020/P1
 C241T C3037T G9871A C14408T A23403G A23851G C26447T G26727T C27944T GGG28881AAC C28887T

EPI_ISL_534240
 2020-07-14 2020-09-11
 Sweden hCoV-19/Sweden/20-52385/2020/P1
 C241T C3037T C4788T A6639G C14408T C21301T G22468T A23403G A25718G G27364T GGG28881AAC G28908T

EPI_ISL_534245
 2020-07-14 2020-09-11
 Sweden hCoV-19/Sweden/20-52425/2020/P1
 C241T C3037T C14408T A23403G GGG28881AAC

EPI_ISL_539809
 2020-07-14 2020-09-21
 China hCoV-19/Hong Kong/VM20040795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G707A C2973T C3037T C14408T C20312T C21597T A23403G T25713C A26924G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541255
 2020-07-14 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T A13222G C14408T C16708G A23403G G25563T C28087T AGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29797-

EPI_ISL_541256
 2020-07-14 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C5284T C5547T C8016T C10319T C14408T G16710T G20176T A23403G T24274C A25121T G25563T C27964T TGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29793-

EPI_ISL_541259
 2020-07-14 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCT1- C241T C1059T C1385T G1738T A1951T C3037T G3242A C9891T C11916T C14408T C20703T A23403G G25563T G26713T C28087T G29332T TGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29765-

EPI_ISL_541261
 2020-07-14 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1323/2020
 ATTA1- C241T C313T C3037T C14408T C16708G A23403G C26895T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_541264
 2020-07-14 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1326/2020
 ATTAAAGGT1- C241T C313T C823T C3037T C3373T C14408T G18160A A23403G C25469T GGG28881AAC AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_541265
 2020-07-14 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- C241T C1059T C1385T G1738T G2089T A2368C C3037T G3242A C11916T C13274T C14408T C16708G A23403G G25563T C28087T C29585T TAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29826-

EPI_ISL_541272
 2020-07-14 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T CGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29733-

EPI_ISL_547478
 2020-07-14 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1440A G2891A C4655T A6217G G8422A C9207T G10233T A16682G A17940T C22088T G22100A C22264T A22320C C26333T G26338A C29546A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547612
 2020-07-14 2020-09-24
 United States hCoV-19/USA/WI-GMF-10762/2020
 ATTAAAG1- C241T C1059T C3037T C8208T C14408T C15324T C16260T C21575T C21622T C22329Y A23403G G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547614
 2020-07-14 2020-09-24
 United States hCoV-19/USA/WI-GMF-10819/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T T2845C C3037T C6500T C14408T A20268G AA21550MW G22014T A23403G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548140
 2020-07-14 2020-09-25
 New Zealand hCoV-19/New Zealand/CAN-ESR-20VR3828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10792C C14408T T19839C A23403G C27513T GGG28881AAC C28905T G29465T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548278
 2020-07-14 2020-09-26
 United States hCoV-19/USA/CA-CZB-3360/2020
 AT1- C241T A259C C3037T T4711C C4897T A6709G T6910C T10076C C14408T C18570T A18945G G18972K A19963G A21137G A23403G C28603T GGG28881AAC C29025T CACCGAGGCCACGCGGAGTACGATCGAGTGTACA29730- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548296
 2020-07-14 2020-09-26
 United States hCoV-19/USA/CA-CZB-3347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCA1- G237T C241T C936T C2325Y T2884C G2964K C3037T T5293A C14408T T15228Y C15701Y C15757Y C16386T G22484C A23403G A27388G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_549132
 2020-07-14 2020-09-28
 Norway hCoV-19/Norway/2889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222- C241T G611A A1202G T1877C C2485T C3037T C14408T C18877T A23403G G25563T C25710T G27147T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556642
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9462B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4149C CAG6501- A8031G C12525T C14408T G17523T C17678T A23403G G25599T GGG28881AAC C29353T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556651
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945F36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C13887T C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556675
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T C1962T C3037T T4579A C5850T C7735T C11824T C14408T C19454T T23255C A23403G C24621T C25549T A28065C GGG28881AAC ATCGAGTGT29752- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556676
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94BE15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C2252A C3037T G11243T C14408T T18723C A20268G A23403G G25720T C27532T C28854T C29085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556689
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4596T T11915G A11992T C12100A C14322T C14408T G23120T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556692
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G A27400G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556717
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945C02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3638T C4002T G8353A C8950T G10097A C13536T C14408T G19009T C21216T A23403G C23731T G27632T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556736
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94912D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1126A C3037T G11083T C14408T A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556741
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B9D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1126A C3037T G11083T C14408T A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556754
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948A6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1126R C1342Y C3037T A7849R G11083T C14408T A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556765
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T C17010T C17747T A17858G C18060T G21785C A23403G A23416T C24034T G27122A C27739T T28144C G28178T C28717T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556769
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94BC84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2501G C3037T C6395T G10565C G11804A A12410G C14408T A18366G C18788T T19839C T21093C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556775
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946DB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G25775T C27807T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556795
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946DC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G G22335T A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556802
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94AC94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1758T C3037T G4510A C14408T G15438T A22034G A23403G G25785T GGG28881AAC G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556807
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946CC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8911R C14408T C16289T A23403G C24026T G25429T C26681T C29167T A29385G C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556818
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556921
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9452A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556931
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-944EEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C853T C3037T C5482T C14408T G17944T G18186T C18747T A22182G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556933
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9452D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1692C C3037T C8772T C14408T C21637T T22576A A23403G C24865T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556941
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9469A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1960T C3037T T8761A G10097A G13993T C14408T G17122T G18960T A23403G G24757T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556942
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946A8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C12473Y C14408T A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556948
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-944F28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556957
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946ABC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556973
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2501G C3037T C6395T G10565C G11804A A12410G C14408T A18366G C18788T T19839C T21093C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557170
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-84717B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G A5877G G10097A C14408T C18981T A20055G A23403G C23731T C24370T G25947T G28077T T28723C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557203
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-83CD39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2501G C2910T C3037T T4237C C6395T G10565C G11804A A12410G C14408T A18366G C18788T T19839C T21093C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557208
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-8127E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C5184T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC C29421T C29445T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557248
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-83CAE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557278
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-83CA8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C24700A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557290
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-858247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557431
 2020-07-14 2020-09-28
 United Kingdom hCoV-19/England/MILK-850D7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1347T C3037T C4115T C14408T G18412T C20736A C21637T A23403G G25644T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560980
 2020-07-14 2020-09-30
 Sweden hCoV-19/Sweden/20-08936/2020
 C241T C3037T A3297T C10228T C11109T C14408T T16891C A20835G A23403G GGG28881AAC

EPI_ISL_563515
 2020-07-14 2020-09-30
 Australia hCoV-19/Australia/VIC12063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C27741Y GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564431
 2020-07-14 2020-09-30
 Australia hCoV-19/Australia/VIC7471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_564471
 2020-07-14 2020-09-30
 Australia hCoV-19/Australia/VIC7527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564473
 2020-07-14 2020-09-30
 Australia hCoV-19/Australia/VIC7529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T C21575Y G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565265
 2020-07-14 2020-09-30
 Australia hCoV-19/Australia/VIC8890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G20438T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565270
 2020-07-14 2020-09-30
 Australia hCoV-19/Australia/VIC8897/2020
 ATTA1- A12W C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565280
 2020-07-14 2020-09-30
 Australia hCoV-19/Australia/VIC8912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G343A A1163T C3037T T7540C A11600G C14408T G16647T C18555T G22992A G23401A A23403G C28087Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565761
 2020-07-14 2020-09-30
 Australia hCoV-19/Australia/VIC9880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_569013
 2020-07-14 2020-10-02
 France hCoV-19/France/IHU-0963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G G22801T G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT919782
 2020-07-14 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-5127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4039T C14408T C16559A G16808A C19983T C21575T A23403G GGG28881AAC G28899T G29810T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

MT937821
 2020-07-14 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T G2962T C3037T C6543T A8558G C14408T C16260T A23403G C23635T T24364A C24767T G25088T G25563T C28821A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT937822
 2020-07-14 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0159/2020
 A1- A4T C241T A427G A459C C683T C3037T T9172C C9430T A10948G C14408T T23341C A23403G C25916T G26730T C28849T GGG28881AAC A29866C CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

MT937824
 2020-07-14 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0161/2020
 ATTAAAGG1- C241T G521T C3037T C8727T T9172C A10948G C14408T A23403G C24099T C25820T G26730T C28045T C28163T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT937825
 2020-07-14 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0162/2020
 ATT1- A12- G174T C241T T833C C1059T G1658T C2976T C3037T C7765T C9430T A13712G G14371T C14408T C23191T A23403G G25563T C27964T C28887T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT937826
 2020-07-14 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T C10138T G10618T C14184T C14408T C16260T G22017T G22427A A23403G G25563T C28821A G29440T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT968074
 2020-07-14 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4253/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T A29147G AAAAAAAAAAAAAAAAAAAAA29883-

MT970439
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T TGGTCATGTTATGGT508- A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

MT970701
 2020-07-14 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T TTT27792- GGG28881AAC

MW012269
 2020-07-14 2020-09-17
 Serbia SARS-CoV-2/human/SRB/NP01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T G10265A G11851T C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW023516
 2020-07-14 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T A13222G C14408T C16708G A23403G G25563T C28087T AGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29797-

MW023517
 2020-07-14 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C5284T C5547T C8016T C10319T C14408T G16710T G20176T A23403G T24274C A25121T G25563T C27964T TGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29793-

MW023520
 2020-07-14 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCT1- C241T C1059T C1385T G1738T A1951T C3037T G3242A C9891T C11916T C14408T C20703T A23403G G25563T G26713T C28087T G29332T TGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29765-

MW023522
 2020-07-14 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1323/2020
 ATTA1- C241T C313T C3037T C14408T C16708G A23403G C26895T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MW023525
 2020-07-14 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1326/2020
 ATTAAAGGT1- C241T C313T C823T C3037T C3373T C14408T G18160A A23403G C25469T GGG28881AAC AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

MW023526
 2020-07-14 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- C241T C1059T C1385T G1738T G2089T A2368C C3037T G3242A C11916T C13274T C14408T C16708G A23403G G25563T C28087T C29585T TAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29826-

MW023533
 2020-07-14 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T CGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29733-

EPI_ISL_490421
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C67A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A2480G C2558T C7279T G11083T C14805T G26144T A28384T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_490422
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_490423
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C6B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C21660T A23403G C23575T G23587C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_490424
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C6E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14805T A23403G G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_490425
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C6F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G11083T C14805T T17247C G26144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_490426
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C70E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T A10323G C14408T A23403G G24368T G25563T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_490427
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C73B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1440A G2891A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_490428
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28854T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_490430
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C7A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T TTA21991- A23403G G26144T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_490431
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C7B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C14805T T17247C G26144T G29402T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_490432
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C7D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A2480G C2558T G11083T C14805T G26144T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_490433
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C7FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C14805T T17247C G26144T C26537T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_490434
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C80B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C203T C241T C1059T C1437T C3037T T13006C C14408T A23403G G25563T C25688T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_490435
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C81A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C12115T G13627T C14805T C15540T G26144T A28338G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_490436
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1437T C3037T T13006C C14408T A23403G G25563T C25688T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_490438
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G2164A C3037T C14408T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_490439
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/LOND-124C917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G11083T C14805T G24040A G26144T G28812T G28842T C29784T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_490538
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/NORW-EE3F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G431A ATG1605- C20270T G26262A ATT27579- A29683T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_490551
 2020-07-15 2020-07-15
 United Kingdom hCoV-19/England/NORW-EE527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C346Y C1314T G11083T C14805T T17247C G26144T AAA29901-

EPI_ISL_497950
 2020-07-15 2020-07-26
 China hCoV-19/Zhejiang/SX0715/2020
 ATTAAAGGTT1- C241T C2197T C3037T C12789T G14118T C14408T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_498087
 2020-07-15 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0548/2020
 AT1- C241T C3037T A7064G C14408T C22675T A23403G C25521T C26586T C26873T T27384C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498088
 2020-07-15 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G174T C241T C2939A C3037T C9857T C14408T A23403G A23920G A26530G G27561T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_498089
 2020-07-15 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0550/2020
 ATT1- C241T C1884T C2094T G2962A C3037T C14408T G16853T A21137G A23403G G23426T GGG28881AAC G29465T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498094
 2020-07-15 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0555/2020
 A1- G174T C241T C3037T C9857T C14408T G21898A A23403G T23569C A23920G A26530G G27561T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498095
 2020-07-15 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T A7064G A10323G C14408T C22675T A23403G C25521T C26586T T27384C GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_498099
 2020-07-15 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6706T C14408T T15930C A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_498100
 2020-07-15 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T G11447A C14408T C22675T A23403G C27630T G28077T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_498101
 2020-07-15 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0562/2020
 C241T T490A C3037T C9857T C14408T A23403G A23920G A26530G G27561T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_498102
 2020-07-15 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0563/2020
 ATT1- C241T C1884T C2094T G2962A C3037T C14408T G16853T A21137G A23403G G23426T GGG28881AAC G29465T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498103
 2020-07-15 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_498106
 2020-07-15 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8139T C14408T C18744T A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_498112
 2020-07-15 2020-07-26
 South Africa hCoV-19/South Africa/KRISP-0574/2020
 AT1- C241T T2506C C3037T C6762T A9439G T12503C G12769T C14408T G22203T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_498797 MT846008
 2020-07-15 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_338/2020
 C241T A1163T C1348T C3037T C5758T C8146T G11222T C14408T C17518T A23403G GGG28881AAC

EPI_ISL_498800 MT846009
 2020-07-15 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_339/2020
 C241T A1163T C3037T C3961T T12457C C14097T C14408T T16161C A23403G C26735T C27847T GGG28881AAC

EPI_ISL_498801 MT846010
 2020-07-15 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_340/2020
 C241T A1163T C3037T A8026G C14408T A21137G T21655C A23403G C26735T G28514C GGG28881AAC G29715T

EPI_ISL_498802 MT846011
 2020-07-15 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_341/2020
 C241T A1163T C1594T C3037T C4810A G8017A T11449C C14408T G18412T A23403G C23638T GGG28881AAC

EPI_ISL_498805 MT846014
 2020-07-15 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_346/2020
 C241T A1163T C3037T C14408T G17679A A23403G T24499C GGG28881AAC G29449T

EPI_ISL_498806 MT846015
 2020-07-15 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_349/2020
 C241T A1163T C3037T C3961T C14408T C15656T C16260T C18582T A23403G GGG28881AAC

EPI_ISL_499267
 2020-07-15 2020-07-28
 United Kingdom hCoV-19/England/NOTT-112D8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_504183 MT847209
 2020-07-15 2020-08-01
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_342/2020
 C241T A1163T C1594T C3037T C4810A T10190G A12121G G12661A C14408T G19735T A23403G C23638T GGG28881AAC

EPI_ISL_504184 MT847208
 2020-07-15 2020-08-01
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_343/2020
 C241T A1163T C1594T C3037T C4810A G8017A C14408T T16746C G18412T C18877T G21193A A23403G G25563T T26106C C26735T C28854T

EPI_ISL_509184
 2020-07-15 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8818T T10190C C13405T C14408T C15952T G18337T G20980A C21789T A23403G

EPI_ISL_509185
 2020-07-15 2020-08-05
 United States hCoV-19/USA/WA-OHSU-1333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A808T C3037T C8818T C14408T C15952T G20980A A23403G TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509187
 2020-07-15 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1349/2020
 ATTAAAG1- C241T C1059T C3037T C14408T C15024T C16260T C20429A A23403G G25563T C28821A

EPI_ISL_509188
 2020-07-15 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1927C C3037T C9857T C10319T C14408T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T

EPI_ISL_509189
 2020-07-15 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7735T C14408T C15024T C16260T C20429A A23403G G25563T C28821A TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509366
 2020-07-15 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1063T C2094T T2432C C3037T C14408T G16853T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_509381
 2020-07-15 2020-08-05
 Singapore hCoV-19/Singapore/771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G7560A A9419G G11083T C13730T C19524T G21220T G21974C C23929T C25515T C26625T C27323T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509382
 2020-07-15 2020-08-05
 Singapore hCoV-19/Singapore/772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3569G C6310A C6312A A9419G G11083T C13730T C19524T C23929T C26013T T27580C C28311T C28776T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509383
 2020-07-15 2020-08-05
 Singapore hCoV-19/Singapore/773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G11083T C12400T C13730T C19524T T21775C C23929T G25907A C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509797 MT846494
 2020-07-15 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0739/2020
 ATTAAAGG1- C241T C1059T C3037T C8290T C14408A C18032T G22632A A23403G G25563T G26727T G28882T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509817 MT846501
 2020-07-15 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C16260T C16952T A23403G G23900C A24253T G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509879 MT846565
 2020-07-15 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T T14191C C14408T C16260T A23403G A24253T G25563T C28821A C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509885 MT846571
 2020-07-15 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G A25048T G25563T C26625T C29095T C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509887 MT846573
 2020-07-15 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TGGTCATGTTATGGT508- T1562C G2035T C3037T C11956T C12025T C14408T T19839C C23216T A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509889 MT846575
 2020-07-15 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2232T C2939T C3037T T4946G C7104T C12025T C14408T T19839C A23403G C23707T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509893 MT846579
 2020-07-15 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C A1982G C3037T G3871T T3931C C4226T T5338G C5672T A7837C C14408T G15646A G19677T C22006T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509900 MT846586
 2020-07-15 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C G1820A C3037T G3871T T3931C C4226T C5672T A7837C C13011T C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509901 MT846587
 2020-07-15 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2549A C3037T G4288A C10815T C14408T C14599T G15732T T19143C G19657A A20268G A23403G C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509907 MT846593
 2020-07-15 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509918 MT846604
 2020-07-15 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C25276T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510721 LR882182
 2020-07-15 2020-08-07
 Switzerland 200032
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G9130T C14408T C21595T A23403G T27319C G28487A C28868T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510722 LR882194
 2020-07-15 2020-08-07
 Switzerland 200033
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C274T C313T C465Y G626R T856Y C3037T TG5344YK T5362Y T6732Y G6742K T6962Y A7271M T8082C C9286T C9309Y T9860Y T10076W C14408T A16210W C19763T C21549M C22650Y A23403G C28732T GGG28881AAC G29260T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510723 LR882184
 2020-07-15 2020-08-07
 Switzerland 200035
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C683T C3037T C7051Y C7303T C8964Y G11083T C14408T C18395Y A23403G G25314T GGG28881AAC C29296Y G29744A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510744 LR882212
 2020-07-15 2020-08-07
 Switzerland 200062
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T C3037T A3046R T3095C G3107S G6894K G10265A C12880T C14408T A15972G T17675Y C19718T A23403G C23896T G28077T C28603T T28759Y GGG28881AAC G29692K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510745
 2020-07-15 2020-08-07
 Switzerland hCoV-19/Switzerland/200064_618_C08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3144D T7035W G10265A C14408T C15720T A15972G T17675Y G19009T C19718T A21323G A23403G G26700T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510747 LR882200
 2020-07-15 2020-08-07
 Switzerland 200066
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1148K C1437T C1480Y C2395Y T2432Y C3018Y C3037T G3584K T3739Y C4701Y C4983S G6309K C6354Y G6922K T7204Y C8078Y C10369Y G10719K C14408T G14767R G15004K C15324Y A19188W A20268R A20729R C22083Y C22214Y G22763K T23045Y A23403G A23669R G25049T C25731Y C26447T G27676S G28048R C28854Y GGG28881RRS G29639K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510748 LR882207
 2020-07-15 2020-08-07
 Switzerland 200067
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2570T C3037T C6578T G10631A G11083T C12559T C14408T C15324T G16900A A23403G C27765T C28893T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510749 LR882204
 2020-07-15 2020-08-07
 Switzerland 200068
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C635Y C683Y C3037T T3595W G3728D A3763R C3768Y G5156K G6566T G10265A G11083K C14408T A15972G C17678Y A17864G C19718T C21622T A23403G C23707T C27532Y T28759Y GGG28881AAC G29422T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510750
 2020-07-15 2020-08-07
 Switzerland hCoV-19/Switzerland/200069_621_D01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C9661T C12369T C14408T C17104Y T19839C G20568A A23403G C24174Y GGG28881AAC C28905T C29200T G29759T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510751 LR882201
 2020-07-15 2020-08-07
 Switzerland 200070
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A624R C3037T G3716K G6901K C14408T T18471C C18526T A23122M A23403G C25498T T26157K C26192Y C28139T C28833T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512360
 2020-07-15 2020-08-11
 United Kingdom hCoV-19/England/NORT-293BE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C5184T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC C29445T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512486
 2020-07-15 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2488T C3037T C3551T T5573C C6380T C7420T C10408T G11801A C14408T G14653T T19839C G21641T A23403G G24586T C25275T G25552T C28253Y GGG28881AAC T29607C

EPI_ISL_512501
 2020-07-15 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1696F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A435G C1437T C3037T C14408T A23403G G25775T C27807T GGG28881AAC G29745T

EPI_ISL_512524
 2020-07-15 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169875/2020
 ATTAA1- T10K C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512533
 2020-07-15 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_514228
 2020-07-15 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_350/2020
 C241T C683T A1163T C3037T C3177T G3259T T11039C C14408T C18555T A23403G G23587T TTA26159- GGG28881AAC

EPI_ISL_514229
 2020-07-15 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_351/2020
 C241T T2083G C2836T C3037T C7267T C10279T C14408T T16746C C18189A C18877T G20274T G21193A C22444T A23403G G25563T T26106C TA26486- C26735T C28854T

EPI_ISL_514230
 2020-07-15 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_352/2020
 C241T A1163T C3037T T10190G A12121G G12661A C14408T G19735T A23403G C25728T TTTTAAAGTTTCCATTTGGAATCTTGA27264- GGG28881AAC

EPI_ISL_514231
 2020-07-15 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_353/2020
 C241T A1163T C3037T C3961T T12457C C14097T C14408T T16161C A23403G C26735T C27847T GGG28881AAC

EPI_ISL_514232
 2020-07-15 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_354/2020
 C241T A1163T C1348T C3037T C5758T C8146T G11222T C14408T C17518T A23403G GGG28881AAC

EPI_ISL_514428 MT883505
 2020-07-15 2020-08-14
 Serbia SARS-CoV-2/human/SRB/KV65-16-07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C15720T A15972G C19718T G22468T A23403G G26700T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515079
 2020-07-15 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T C18647T T19839C C21595T C21646T A23403G T25711C C26846T T28009C G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515466
 2020-07-15 2020-08-19
 Canada hCoV-19/Canada/AB-Z0002/2020
 ATT1- C241T C512T T2236A C2416T G2528A C2721T C3037T C12525T C12695Y C14408T C15952Y C16575T C16806T A16923G G17679T C17845Y C19484Y G20014T C21254T A23122W A23403G G25563T A25718G C26151T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_515843
 2020-07-15 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T G11447A C14408T C22675T G23311T A23403G GGG28881AAC G29759T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515847
 2020-07-15 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001362/2020
 A1- C241T C3037T C8802T G11534A C14408T A23403G G27226T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515853
 2020-07-15 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T A7064G C14408T C22675T A23403G C25521T C26586T T27384C C27406T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_516724
 2020-07-15 2020-08-21
 United States hCoV-19/USA/CA-CZB-3649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C218T C241T C1812T C3037T G3052T C6543Y C11152T C14408T A20268G C21844A G22225T A23403G T24076C C28854T G29140T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_516725
 2020-07-15 2020-08-21
 United States hCoV-19/USA/CA-CZB-3650/2020
 AT1- C218T C241T C1812T C3037T G3052T T10102Y C11152T C14408T A20268G C21364Y C21844A G22225T A23403G T24076C C28854T G29140T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_516726
 2020-07-15 2020-08-21
 United States hCoV-19/USA/CA-CZB-3651/2020
 ATTAAAGGTTTA1- C218T C241T C1812T C3037T G3052T C11152T C14408T A20268G C21844A G22225T A23403G T24076C C28854T G29140T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518046
 2020-07-15 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002463/2020
 ATTAAAGGTTTA1- C241T T2506C C3037T C6762T A9439G T12503C G12769T C14408T G22203T A23403G G25770T GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_518112 MT973163
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T GT5743CC T7540C C14408T G16647T C18555T G22899T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518212 MT973264
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6214/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T G3564T T7540C C14408T G15594T G16647T C18555T G22992A G23302T G23401A A23403G G24933T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518221 MT973273
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T G558T A1163T C3037T G3564T T7540C G11535T C14408T G16647T C18555T G22992A G23401A A23403G G24933T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_518389 MT972942
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27012T GGG28881AAC C29754T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518391 MT972944
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_518393 MT972946
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518904 MT970820
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A C23029T G23401A A23403G GGG28881AAC

EPI_ISL_518925 MT970460
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22498T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518945 MT970813
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26326T GGG28881AAC

EPI_ISL_518947 MT970815
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518951 MT970530
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4540/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518952 MT970532
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_518953 MT970533
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4542/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_518954 MT970534
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518966 MT970529
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518978 MT970515
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519067 MT970844
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4679/2020
 ATTAAAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C26028T GGG28881AAC

EPI_ISL_519072 MT970850
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4684/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C26028T GGG28881AAC

EPI_ISL_519075 MT970868
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4687/2020
 ATTAA1- C241T A1163T C3037T T7540C C14408T G16647T C18481T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519076 MT970869
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519077 MT970870
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519088 MT970883
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519089 MT970885
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4701/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519090 MT970887
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC G29579A

EPI_ISL_519097 MT970896
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4709/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519108 MT970909
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T A19073G G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519110 MT970911
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_519111 MT970912
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4723/2020
 ATTAAAGGTTT1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519120 MT970922
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C11001T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519121 MT970923
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4733/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C11001T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519123 MT970926
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519128 MT970931
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C4423T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C25889T G28690T GGG28881AAC

EPI_ISL_519129 MT970932
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519138 MT970950
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13255T G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519148 MT970967
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519149 MT970968
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519168 MT971000
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4782/2020
 ATTAAAGGTTT1- C241T G526T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519176 MT971015
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4790/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519177 MT971017
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G526T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519190 MT970886
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519191 MT970888
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519196 MT970924
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519203 MT970946
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519205 MT970949
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519211 MT970964
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519228 MT971005
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519238 MT970837
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519315 MT972896
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27594C T27957C GGG28881AAC

EPI_ISL_519319 MT972901
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A13625G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519320 MT972902
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C A13625G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519321 MT972903
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C A8031G C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519339 MT970661
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_519340 MT970663
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519341 MT970664
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519342 MT970665
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC G29579A

EPI_ISL_519343 MT970666
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519354 MT970337
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T A21213G G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519355 MT970338
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3962/2020
 AT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519372 MT970206
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3980/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T G17140T C18555T T20401C G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519373 MT970207
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519374 MT970205
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3982/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519375 MT970208
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3985/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519376 MT970209
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3986/2020
 ATTAAAGGTT1- C241T A1163T C2227T C3037T C5301T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519465 MT970403
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519524 MT970500
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519526 MT970503
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T G3259T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519527 MT970504
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC

EPI_ISL_519528 MT970505
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519539 MT970526
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3563A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519542 MT970535
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519547 MT970540
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519558 MT970554
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519559 MT970556
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC

EPI_ISL_519563 MT970566
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519565 MT970568
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G526T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519566 MT970569
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519567 MT970570
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23758T GGG28881AAC

EPI_ISL_519581 MT970588
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519582 MT970589
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519583 MT970590
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519584 MT970591
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519585 MT970593
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC C29774T

EPI_ISL_519591 MT970603
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519592 MT970604
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519593 MT970605
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519594 MT970606
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519595 MT970607
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519596 MT970608
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC G29579A

EPI_ISL_519597 MT970609
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519625 MT970594
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC G29579A

EPI_ISL_519656 MT970662
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519661 MT970444
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519675 MT970489
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519684 MT970679
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519685 MT970680
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519701 MT970702
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23413T GGG28881AAC T29680C

EPI_ISL_519753 MT970763
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C1263T C3037T T7540C C14408T C14616T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519757 MT970767
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519789 MT970499
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519791 MT970507
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC

EPI_ISL_519794 MT970527
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519797 MT970553
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4993/2020
 ATTAAA1- G7T C241T A1163T C3037T T7540C C12880T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519798 MT970555
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC

EPI_ISL_519799 MT970557
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519800 MT970558
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519811 MT971036
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519813 MT971038
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T C19151T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519815 MT971040
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519827 MT971052
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519828 MT971053
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519831 MT971056
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_520145 MT971356
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3411T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520183 MT972910
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5432/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T6394C T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_520184 MT972911
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_520185 MT972912
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520186 MT972913
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5435/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C25889T GGG28881AAC

EPI_ISL_520188 MT972915
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520189 MT972916
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T C16173T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520190 MT972917
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T C16173T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520192 MT972919
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5441/2020
 ATTAAAGGTTTATA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520193 MT972920
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520194 MT972921
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520195 MT972922
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_520196 MT972923
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21302T CG21304AA G22992A G23401A A23403G G25726T GGG28881AAC

EPI_ISL_520197 MT972924
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22264T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_520198 MT972925
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520199 MT972926
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520202 MT972928
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520203 MT972929
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520204 MT972930
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G28903T

EPI_ISL_520205 MT972931
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A10055G C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520206 MT972932
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_520207 MT972933
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3984T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_520210 MT972936
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G T25144C GGG28881AAC C29546T

EPI_ISL_520211 MT972937
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5461/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520212 MT972938
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_520213 MT972939
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5464/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T C16616T G16647T C18555T C21575T G22992A G23401A A23403G GGG28881AAC C29376T

EPI_ISL_520214 MT972940
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5465/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C27393T GGG28881AAC

EPI_ISL_520516 MT970204
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520517 MT970203
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3800/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_520518 MT970202
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3801/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520532 MT970498
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3816/2020
 ATTAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26078T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520558 MT970220
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_520649 MT970285
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520650 MT970286
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC C29272T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_520651 MT970287
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC C29272T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_520652 MT970288
 2020-07-15 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_522512
 2020-07-15 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2733/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C14408T C16650T G17722T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_522513
 2020-07-15 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2734/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T G17722T A17770G A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_524887
 2020-07-15 2020-08-28
 United States hCoV-19/USA/MD-MDH-0160/2020
 AT1- C241T C1059T C2143T C3037T A7782G C11878A C14408T C16260T A23403G G23948A G25088T G25563T C27982T C28821A G29862A T29867A A29871G A29876G AA29888CG

EPI_ISL_524891
 2020-07-15 2020-08-28
 United States hCoV-19/USA/MD-MDH-0164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C37A C241T C1059T C3037T C3817T C14408T C21575T A23403G A23813G G25563T C27964T C28833T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_525726
 2020-07-15 2020-09-01
 United States hCoV-19/USA/WA-S2736/2020
 ATTAAAGGTTTATA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T T15276C C20178T G22205T G22992A A23403G G25563T C28087T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_526380
 2020-07-15 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A95EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3486A C3653T C14408T A23403G C25624T G28851K GGG28881AAC C29870A

EPI_ISL_526381
 2020-07-15 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A9616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3486A C3653T C14408T A23403G C25624T GGG28881AAC C29870A

EPI_ISL_526385
 2020-07-15 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A968F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3486A C3653T C14408T A23403G C25624T G28851K GGG28881AAC C29870A

EPI_ISL_527643
 2020-07-15 2020-09-04
 United States hCoV-19/USA/AR-CDC-4265/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527644
 2020-07-15 2020-09-04
 United States hCoV-19/USA/AR-CDC-4270/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T C16375Y C17074Y G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527645
 2020-07-15 2020-09-04
 United States hCoV-19/USA/AR-CDC-4271/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528842
 2020-07-15 2020-09-09
 India hCoV-19/India/TG-CCMB-X100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2842T C3037T G4354A A6034T C6573T C9050T C10340T C14408T C18029T G21770T A23403G C25528T C26335T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528844
 2020-07-15 2020-09-09
 India hCoV-19/India/TG-CCMB-X103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G4354A C9693T AA21550CT A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528845
 2020-07-15 2020-09-09
 India hCoV-19/India/TG-CCMB-X110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G4354A C5512T C6026T C6573T C14408T A23403G A23523T C25528T G27754T GGG28881AAC G29543T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528846
 2020-07-15 2020-09-09
 India hCoV-19/India/TG-CCMB-X111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T A4372G C5700A C9693T C14408T G15982T C16626T AA21550CT A23403G A24652T G25424A G28378T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528847
 2020-07-15 2020-09-09
 India hCoV-19/India/TG-CCMB-X112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G4354A C6026T C6573T C14408T AA21550CT A23403G A23523T C24579T C25528T G27754T GGG28881AAC G29543T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528848
 2020-07-15 2020-09-09
 India hCoV-19/India/TG-CCMB-X113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T T3835C C5700A C9693T C10815T C14408T C16626T C19170T AA21550CT A23403G C24133T GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528849
 2020-07-15 2020-09-09
 India hCoV-19/India/TG-CCMB-X115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T G4354A C6573T AA21550CT A23403G C25528T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_532965
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7675B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A G1181K C3037T A3327G A3569G C3695T A6211G A8659G C14408T C19488T A23403G C26527T T27221C C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532966
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-768694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T T4768C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532968
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7689D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C186T C241T C3037T G3549A C5173T A9433T G10265A C10401T C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532970
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-768C1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130T C3037T C3170T C6336T C14408T C19961T G20006T A23403G C27673T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532974
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7664AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C C7420Y C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532986
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-76672A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532989
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7668DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C C9474T G10097A C13536T C13730T C14408T T20197Y T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532999
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-753EC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G A27400G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533002
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7689E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3549A C5173T A9433T G10265A C10401T C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533004
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7689AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5012A C8832T G10265A C14408T C16887T A23207G A23403G C25680T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533005
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7606E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A C13536T C14408T C17634A C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533008
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-766405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27213Y C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533011
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-795CC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533013
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-79CD65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533019
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-795FB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533022
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-78A395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A A12928G C14408T A19650G A23403G C23709T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533023
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-78634E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25699T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533028
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-788519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17135T C20936T A23403G G25217T C25350T T25899C C28720T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533031
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-788713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T C14408T G14866A C17825T A23403G G25617A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533034
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79A20E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533036
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-787AB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G A27400G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533040
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79EEF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533043
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-76CC52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18315A C19698T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533044
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-790709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7239Y A9744G C14408T C19011T A23403G C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533045
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-784EA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G10688A G13240A C14408T C16332T C20389T T22282C A23403G C23683T C23731T C25782T G28048T G28580T GGG28881AAC C29514T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533048
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-793153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2458T C3037T C4002T C8251T G8353A C8950T C9985T G10097A C10458T G11083T C13536T C13551T C14408T C21614T A23403G C23731T T27740C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533055
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79045D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T C17028T A17063G G17443T G18148T C21998T A23403G C23731T C27513T GGG28881AAC T28889C AGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCT29735- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533058
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7987C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533061
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-797C03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533062
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-78498A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C7528T C11124T C14408T C15848T G19254T T19893C C20703T A23403G C25889T C27026Y AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533063
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-788986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533064
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-789F0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G A27400G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533065
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-79CA40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533068
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-788889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7638A C8683T C13335T C14408T G14622T A20268G C22088T A23403G T26820C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533071
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7A08D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533072
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-7A4553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9611T C14408T A14648G T19839C A23403G GGG28881AAC G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533073
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-795FDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T C14408T G14866A A18108G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533075
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-793663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533076
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-78CC4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1347T C3037T C14408T G18412T C20736A C21637T A23403G G25644T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533078
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-76E0BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T C14408T G14874T C17639T G19635A A23403G T27264G C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533080
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-78A76C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T T4768C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533081
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79EE24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533085
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79F1DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533096
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-794B09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533102
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79C4F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C C21846T A23403G C25703T T25992C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533103
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-796387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6267T T9961C G10265A C14408T A15972G C16178T G19648T C19718T A23403G A25492G T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533106
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7948A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7991A C14408T C18877T C20199T A23403G G25563T G25644T C26139T C26735T T27634C G28857T G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533109
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-788C50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533110
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79824C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533111
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-769754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533116
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79089D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533121
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-799454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A A10844G T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533122
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-78B886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C7728T G8353A C8950T G10097A C13536T C14408T G19009T C21216T A23403G C23731T G27632T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533123
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7897D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T G20377A A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533126
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-787608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T277A C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533127
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-789D2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G A27400G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533128
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-790639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533131
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-795F48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533132
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-79CFBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533134
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79CA13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T T25992C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533137
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79971F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533142
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-78AC4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2458T C3037T C4002T G8353A C8950T C9985T G10097A C10458T G11083T C13536T C14408T C21614T A23403G C23731T T27740C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533145
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79EE60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533148
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-796509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C6701T A12103G G13410A C14408T A23403G G24368T T25237A G25563T A28336G G28857T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533153
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-799B9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533155
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-78E777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6267T T9961C G10265A C14408T A15972G C16178T G19648T C19718T A23403G A25492G T28759C GGG28881AAC C29311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533156
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79BF33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533157
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-785C71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C14408T C21637T A23403G G24368T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533158
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79AFE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C401T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533159
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-76D073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8782T C14408T G18315A C19698T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533161
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-79CECC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1911Y C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533162
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-797F73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533164
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-795DB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533165
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-798EEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T A435G C1437T C3037T G10976A C14408T G15906T A23403G C25046T C27807T G28487C GGG28881AAC G29745T C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533168
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7858C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C14408T C21637T A23403G G24368T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533172
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-77ADF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C7303T G11083T C11224T C13247T C14408T C14937T G15438C C16017T T18144C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533174
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-787C60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C4755Y G8353A C8950T G10097A C13536T C14408T G19009T C21216T A23403G C23731T G27632T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533176
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-789A28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A C27416T GGG28881AAC C29451T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533182
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-787301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C7735A C8146T G10097A C14408T C21639T A23403G C23731T G25489T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533183
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-78886B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T C14408T G14866A C17825Y A23403G G25617A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533184
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7885A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C A5667T C12651T C14408T G14923A G21624T C22006T A23403G G25699A C26270T G28628T GGG28881AAC A29403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533185
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-791340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533186
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79B407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533187
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79C8EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T G8371T G11083T C14408T C17746T G19962T C22477T A23403G G25563T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533189
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-785567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T G10097A G12817T C13536T C14408T G22199T A23403G C23731T G24004A GGG28881AAC C28896T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533196
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7948D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7299T G11083T G12423A C14408T A20268G C21614T A23403G C28603T C28854T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533203
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-795D4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T C14408T G14866A A23403G C25680T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533206
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-799A16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533208
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79D502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A A10844G T10992C C11001T C14408T C22432T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533210
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-792585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533212
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79D6C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C7528T C11124T A12561T C14408T C15848T G19254T T19893C C20703T A23403G C25889T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533216
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79301A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C7735A C8146T G10097A C14408T C21639T A23403G C23731T G25489T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533218
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-78FEEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533219
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-78D945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A15187G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533220
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7840FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C9724T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533224
 2020-07-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-794B54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T T16764C C18508T T22391C A23403G GGG28881AAC A29282T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534229
 2020-07-15 2020-09-11
 Sweden hCoV-19/Sweden/20-08939/2020/P1
 C241T C882T C1758T C3037T C6990T C13761T C14408T C18877T A23403G G25563T C25710T C26735T G28899T G29227T A29700G

EPI_ISL_534337
 2020-07-15 2020-09-14
 Russia hCoV-19/Russia/CRIE4924360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C3373A C3884T C6883T C14408T G16365T G21724A A23403G GGG28881AAC C29149T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_535659 MW001671
 2020-07-15 2020-09-15
 United States SARS-CoV-2/human/USA/AR-CDC-7905/2020
 G199A C241T C1059T C2925T C3037T G11083T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_541281
 2020-07-15 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C241T C1059T C3037T G6052A C10319T C14408T C16708G G19872T A23403G G25563T G25855T C27964T G29254T G29474T G29764T GGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29794-

EPI_ISL_541289
 2020-07-15 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C241T G2177A C2910T C3037T C6027T A11782G C12412T T14313C C14408T A14998G C15720T C18796T A23403G C27920T C28045T GGG28881AAC ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_541291
 2020-07-15 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C106T C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T A23403G G25563T C28087T AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_541687
 2020-07-15 2020-09-23
 India hCoV-19/India/MH-NIV-116690/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T T5344C C5700A C14408T C16260T G21220T A23403G C26735T GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_547615
 2020-07-15 2020-09-24
 United States hCoV-19/USA/WI-GMF-10838/2020
 ATTAAAGGTTTATACCTTCCCAG1- CG241T C2455T G2782A C3037T C14408T C15981T C18086T T19839C A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547616
 2020-07-15 2020-09-24
 United States hCoV-19/USA/WI-GMF-10854/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T G5150T C5284T A10111G C14408T T14949C A20755C A23403G G25563T G28899T C29197T G29315T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547617
 2020-07-15 2020-09-24
 United States hCoV-19/USA/WI-GMF-10885/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1191T G2035T C3037T G7743T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547618
 2020-07-15 2020-09-24
 United States hCoV-19/USA/WI-GMF-10889/2020
 ATTAAAGGTTTATACCT1- C241T C715T C1059T G2036T C3037T C4686T G7042T C11916T C14408T G23311T A23403G A23586G G25563T G27948C C28657T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547619
 2020-07-15 2020-09-24
 United States hCoV-19/USA/WI-GMF-10900/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547620
 2020-07-15 2020-09-24
 United States hCoV-19/USA/WI-GMF-10913/2020
 ATTAAAGGTTTATACCTTC1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C8016T C14408T G19677T A23403G C28977T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548267
 2020-07-15 2020-09-26
 United States hCoV-19/USA/CA-CZB-3269/2020
 ATTAAAG1- C241T G1068A C3037T C14408T G15644T A23403G G28079T T28582C GGG28881AAC A29700G TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_548274
 2020-07-15 2020-09-26
 United States hCoV-19/USA/CA-CZB-3362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15352T C16386T A23403G G26814T T28327C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548291
 2020-07-15 2020-09-26
 United States hCoV-19/USA/CA-CZB-3357/2020
 ATTAA1- C241T AAGTCATTT686- G1820A C3037T G3085T TAT9858- C14408T C14724T G21255C A23403G C25433T GGG28881AAC G28960T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548314
 2020-07-15 2020-09-26
 United States hCoV-19/USA/CA-CZB-3271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGC1- C241T C3037T C5512T C14408T G14874T A22759G A23403G G27366T G28580C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548323
 2020-07-15 2020-09-26
 United States hCoV-19/USA/CA-CZB-3365/2020
 AT1- C241T G1125R G2447T C3037T C8326Y C14408T G15327T C16480A G16843T G18745T A20268G A20860G T21273C A23403G G24872T A25253G G25720T C28448Y C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_548332
 2020-07-15 2020-09-26
 United States hCoV-19/USA/CA-CZB-3363/2020
 ATTAAAG1- T10Y C241T C817T C1059T C3037T C12880T C14408T C15579T G18449A G19542K C20759T A23403G C25282T G25563T G26727T C27964T T29726- TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548477
 2020-07-15 2020-09-26
 United States hCoV-19/USA/CA-CZB-3678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCC1- C241T G1021A T2605Y C3037T G4504K C4582T G6404T T6942Y C14408T C19859T A20268G T22367Y A23403G T25123C G25654K C27925T G28378T G28881T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_549170
 2020-07-15 2020-09-28
 Norway hCoV-19/Norway/2902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G611A A1202G T1877C C2485T C3037T C14408T C18877T A23403G G25563T C25710T G27147T T27810C G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549171
 2020-07-15 2020-09-28
 Norway hCoV-19/Norway/2903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6402T C14408T A16734G A20268G A23403G G24794T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556521
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946F71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C346T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556639
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556643
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4455T G7295T C12784T C14408T G21809A T22150C A23403G G23678T G25523T G25563T C27297T G28001T G28346T G28917T C29247T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556669
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94C2CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19951T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556670
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C9308T C12885T C14408T A19831R G21004T T21465C A23403G C26571T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556671
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945FCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G25775T C27807T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556677
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94632A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T G12067T C14408T A15984T C18959T C20946T C22075T A23403G C27945T G28086T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556678
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B0F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C2252A C3037T G11243T C14408T T18723C A20268G A23403G G25720T C27532T C28854T C29085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556711
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94631B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5010T C8595T C14408T T15648C A23403G A27421G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556713
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945E2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4455T G7295T C12784T C14408T T22150C A23403G G23678T G25523T G25563T C27297T G28001T G28346T G28917T C29247T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556716
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94BE9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C3037T C5482T C14408T G17944T C18747T A22182G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556720
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A652G C1170T C3037T C4002T C7420T G10097A G11083T C13536T C14408T A23403G C23731T GGG28881AAC C29738T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556722
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556724
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T A8821G A13319G C14408T C15656T C15752T C16466Y C18877T A23403G G24197T G25563T T26066C C26735T T28098C G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556732
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945C5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T C19269T A20268G C21614T A23403G C24700A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556742
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94590B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7360A T12136W A13285R C14408T C16575T T19839C T21854C A23403G C23481T A24730T A25741G C26681T A26793C T27285C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556743
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9451B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G11906C A12180G C14408T A19228G A23403G C23731T C26198T G28580T C28720T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556756
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94BC93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1675C C3037T C11289T C11322T C14408T T15051C C15381Y A20255G G22895K G22899K A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556758
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94BBD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G599A C1267T T2153A C3037T C10138Y C14408T A23403G G26589C A27083G C27128T GGG28881AAC C29520T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556760
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94874A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556766
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9491A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T G625T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556768
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946B31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4455T G7295T C12784T C14408T T22150C A23403G G23678T G25523T G25563T C27297T G28001T G28346T G28917T C29247T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556778
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9458B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083K C14408T G16117T A23403G G26109T GGG28881AAC C29253T C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556788
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94531C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10933C G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556796
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G7360T T10453C G11083T C11195T C14408T A23403G A25003G GGG28881AAC G29779K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556801
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6285T -11072TTC C14220T C14408T T19893C A23403G C24370T C25728T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556804
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C92Y C241T AAGTCATTT686- C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556809
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9485C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T G20377A A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556812
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9456B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12145G C14408T C20759T C21676T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556814
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9458C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C11152T C14408T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556816
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94915A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C853T C3037T C5482T C14408T G17944T G18186T C18747T G22051K A22182G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556819
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94C078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556943
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-944FA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T G13348T C14408T G14866A C21811T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556950
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94572F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556959
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-944FBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4455T G7295T C12784T C14408T T22150C A23403G G23678T G25523T G25563T C27297T G28001T G28346T G28917T C29247T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556974
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9464BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C5184T A6616R G10097A T10992C C11001T C14408T A23403G C23731T C24130Y C25714T G28580T GGG28881AAC C29421T C29445T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557223
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-8134D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7258C T8941C G12911A C12919T C14408T G15438T A20268G A23403G C29485T G29715T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557257
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-8054CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G521K C3037T G9130T C10369T T11275C C13585T C14408T A21043G A23403G T27319C G28083K G28487A C28868T GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557266
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-809C29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557270
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-849DDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C19488T A23403G T25851C C26527T G28361C C28391T GGG28881AAC C29659T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557293
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-830E9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A21868T A23403G G25298R G27967T GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557314
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-822D18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T C14408T G14874T C17639T G19635A A23403G T27264G C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557316
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-809C1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C2252A C3037T G11243T C14408T T18723C A20268G A23403G G25720T C27532T C28854T C29085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557317
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-85814A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7165T G10265A C14408T C15720T A15972G C19718T G22381A A23403G C24795T G26700T T28759C GGG28881AAC G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557321
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-809755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557322
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-85762E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11514T C13168T C14408T C18877T C22444T A23403G G24764T G25563T C26735T C27059T G27806T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557441
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-870CD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T C23230T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557525
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-8518C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C6843T G10097A C13378T C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557547
 2020-07-15 2020-09-28
 United Kingdom hCoV-19/England/MILK-85025E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C2062T C3037T A3327G A3569G C3695T A6211G A8659G C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561241
 2020-07-15 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C12469T C14408T A23403G GGG28881AAC C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563900
 2020-07-15 2020-09-30
 Australia hCoV-19/Australia/VIC13967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563989
 2020-07-15 2020-09-30
 Australia hCoV-19/Australia/VIC3983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563990
 2020-07-15 2020-09-30
 Australia hCoV-19/Australia/VIC3984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564440
 2020-07-15 2020-09-30
 Australia hCoV-19/Australia/VIC7484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T G7272R T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565747
 2020-07-15 2020-09-30
 Australia hCoV-19/Australia/VIC9862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T C4421T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_568565
 2020-07-15 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T T4346C T8076C C9286T C10376T C14408T C14708T A23403G C28725T GGG28881AAC G29692T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_569016
 2020-07-15 2020-10-02
 France hCoV-19/France/IHU-0966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT786327
 2020-07-15 2020-07-21
 Turkey SARS-CoV-2/human/TUR/Kafkas-SARSCoV2-001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C2509T C3037T C13620T C14408T C14724T A23403G G24262T G27703T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

MT786329
 2020-07-15 2020-07-21
 Turkey SARS-CoV-2/human/TUR/Kafkas-SARSCoV2-004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C7765T C8326T C14408T C17690T C18877T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

MT786331
 2020-07-15 2020-07-21
 Turkey SARS-CoV-2/human/TUR/Kafkas-SARSCoV2-006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C2509T C3037T C13620T C14408T C14724T A23403G G24262T G27703T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

MT786334
 2020-07-15 2020-07-21
 Turkey SARS-CoV-2/human/TUR/Kafkas-SARSCoV2-007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C6317T C7765T C8326T C14408T C17690T C18877T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

MT786335
 2020-07-15 2020-07-21
 Turkey SARS-CoV-2/human/TUR/Kafkas-SARSCoV2-0010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C2509T C3037T A4465G C13620T C14408T C14724T A23403G G24262T G27703T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

MT786336
 2020-07-15 2020-07-21
 Turkey SARS-CoV-2/human/TUR/Kafkas-SARSCoV2-0023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C2509T C3037T G5015A G11083T C13620T C14408T C14724T A23403G G24262T G27703T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

MT786337
 2020-07-15 2020-07-21
 Turkey SARS-CoV-2/human/TUR/Kafkas-SARSCoV2-0024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C7765T C8326T C14408T C16428T C17690T C18877T A23403G G25563T G28857T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

MT787473
 2020-07-15 2020-07-22
 Turkey SARS-CoV-2/human/TUR/Kafkas-SARSCoV2-0034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C2509T C3037T C13620T C14408T C14724T A23403G G24262T G27703T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

MT787486
 2020-07-15 2020-07-22
 Turkey SARS-CoV-2/human/TUR/Kafkas-SARSCoV2-0032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C7765T C8326T C13517T C14408T C17690T C18877T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

MT787487
 2020-07-15 2020-07-22
 Turkey SARS-CoV-2/human/TUR/Kafkas-SARSCoV2-0047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C7765T C8326T C14408T C16428T C17690T C18877T A23403G G25563T G28857T TCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29753-

MT787500
 2020-07-15 2020-07-22
 Turkey SARS-CoV-2/human/TUR/Kafkas-SARSCoV2-0027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G210T C241T G2086T C3037T C7765T C8326T C14408T C16428T C17690T C18877T A23403G G25563T G28857T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

MT787503
 2020-07-15 2020-07-22
 Turkey SARS-CoV-2/human/TUR/Kafkas-SARSCoV2-0042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C2509T C3037T G5015A C13620T C14408T C14724T A23403G G24262T G27703T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

MT787506
 2020-07-15 2020-07-22
 Turkey SARS-CoV-2/human/TUR/Kafkas-SARSCoV2-0037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C313T C2509T C3037T G5015A C13620T C14408T C14724T A23403G G24262T G27703T GGG28881AAC TCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29753-

MT787553
 2020-07-15 2020-07-22
 Turkey SARS-CoV-2/human/TUR/Kafkas-SARSCoV2-0033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C7765T C8326T C14408T C17690T C18877T A23403G G25563T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

MT787558
 2020-07-15 2020-07-22
 Turkey SARS-CoV-2/human/TUR/Kafkas-SARSCoV2-0045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C7765T C8326T C14408T C17690T C18877T A23403G G25563T TCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29753-

MT919783
 2020-07-15 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-5524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G5924A G6943T C14408T C18877T T21775G A23403G GGG28881AAC C29784T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

MT937823
 2020-07-15 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0160/2020
 AT1- C241T C1059T C2143T C3037T A7782G C11878A C14408T C16260T A23403G G23948A G25088T G25563T C27982T C28821A G29862A T29867A A29871G A29876G AA29888CG

MT937827
 2020-07-15 2020-08-28
 United States SARS-CoV-2/human/USA/MD-MDH-0164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C37A C241T C1059T C3037T C3817T C14408T C21575T A23403G A23813G G25563T C27964T C28833T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT947557
 2020-07-15 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2736/2020
 ATTAAAGGTTTATA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T T15276C C20178T G22205T G22992A A23403G G25563T C28087T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT968075
 2020-07-15 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4265/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MT968076
 2020-07-15 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4270/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T C16375Y C17074Y G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MT968077
 2020-07-15 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4271/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MW012279
 2020-07-15 2020-09-17
 Serbia SARS-CoV-2/human/SRB/KV39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T G1408A C1551T C3037T G10265A C12525T C14408T G15705T A15972G C19718T A23403G A23674G C27002T G28077T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW023542
 2020-07-15 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C241T C1059T C3037T G6052A C10319T C14408T C16708G G19872T A23403G G25563T G25855T C27964T G29254T G29474T G29764T GGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29794-

MW023550
 2020-07-15 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCG1- C241T G2177A C2910T C3037T C6027T A11782G C12412T T14313C C14408T A14998G C15720T C18796T A23403G C27920T C28045T GGG28881AAC ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

MW023552
 2020-07-15 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C106T C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T A23403G G25563T C28087T AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_498586
 2020-07-16 2020-07-27
 Singapore hCoV-19/Singapore/688/2020
 ATTA1- C241T T1947C C3037T C3261T C14408T G15380T C18877T C22120T C22444T A23403G G25563T C26735T C28854T AAAAAAAAAAAA29892-

EPI_ISL_498594
 2020-07-16 2020-07-27
 Singapore hCoV-19/Singapore/696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTG1- C6310A C6312A T8815Y G11083T C12400T C13730T C19524T T21775C C23929T G25907A C28311T AAAAAAAAAAAA29892-

EPI_ISL_499268
 2020-07-16 2020-07-28
 United Kingdom hCoV-19/England/NOTT-112D9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATGGTTGAGCTGGTA518- C3037T T12304C C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501823
 2020-07-16 2020-07-31
 Latvia hCoV-19/Latvia/076/2020
 C241T C3037T G13201A C14408T T15096C C21642T A23403G C24130T GGG28881AAC

EPI_ISL_501829
 2020-07-16 2020-07-31
 Latvia hCoV-19/Latvia/077/2020
 C241T C3037T C5787T G10265A C14408T C15720T A15972G C17285T C19718T A23403G G26700T G28812T GGG28881AAC C29067T

EPI_ISL_504137 MT847216
 2020-07-16 2020-08-01
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_264/2020
 C241T A1163T C3037T C14408T A20136T A23403G C28311T GGG28881AAC

EPI_ISL_509191
 2020-07-16 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509192
 2020-07-16 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14424G C17502T G18880T T19839C A23403G GGG28881AAC

EPI_ISL_509193
 2020-07-16 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19542T A20268G A23403G G24328T C28854T C29274A

EPI_ISL_509195
 2020-07-16 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17172T A20268G A23403G C28854T C29274A

EPI_ISL_509197
 2020-07-16 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10267C G10793T T13569C C14408T C18877T C21811G A23403G A25076G G25563T G25660C C26192T G27613A

EPI_ISL_509198
 2020-07-16 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T G4631A C6539T A12829G C14408T C14491T G18898T A23403G A25315G GGG28881AAC

EPI_ISL_509199
 2020-07-16 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10793T T13569C C14408T C18877T C21811G A23403G A25076G G25563T G25660C C26192T G27613A TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509201
 2020-07-16 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14768T C15933T G16968T T19839C G21724T A23403G GGG28881AAC

EPI_ISL_509202
 2020-07-16 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T G10793T C14408T C18877T A19137G A23403G A25076G G25563T G25660C

EPI_ISL_509302
 2020-07-16 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G174T C241T C3037T C14120T C14408T A23403G A23920G A26530G G27561T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509303
 2020-07-16 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T4693C A7064G C14408T C22675T A23403G C23997T C25521T C26586T T27384C GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_509304
 2020-07-16 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A7064G C14408T C22675T A23403G A23938G C23997T C25521T G25767T C26586T T27384C GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509308
 2020-07-16 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001049/2020
 ATTAAAGGT1- C241T A1547G C2094T G2962A C3037T C5832T C14408T G16853T T17106C C20451T A21137G A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509356
 2020-07-16 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001109/2020
 AT1- C241T C1063T C2094T T2432C C3037T C14408T G16853T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509362
 2020-07-16 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001116/2020
 AT1- C241T C3037T C4002T G10097A C13536T C14120T C14408T C18747T G21010T A23403G C23731T G26640T GGG28881AAC G29425T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_509364
 2020-07-16 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T12503C C14408T A23403G G25770T C26681T GGG28881AAC C29721T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_509365
 2020-07-16 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A7064G C14408T A17223G C21767T C22675T A23403G GGG28881AAC C29137T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509367
 2020-07-16 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001124/2020
 ATTAAAGGTTT1- C241T C3037T C3811T C7231T C9532T G11083T C14396T C14408T A19464G A23403G C25797T C26571T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509368
 2020-07-16 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3604T A12180G C14408T C22120T A23403G C23625T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509369
 2020-07-16 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T T8409C C13946T C14408T C15852T T22921C A23403G C26801T A27675C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_509380
 2020-07-16 2020-08-05
 Singapore hCoV-19/Singapore/770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3065T A3951G C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509523
 2020-07-16 2020-08-05
 Australia hCoV-19/Australia/NSW2579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8950T C14408T G16647T C22480T G22992A G23401A A23403G G24764T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_509776 MT846413
 2020-07-16 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C673T C3037T T4125C C14408T C14805T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509795 MT846492
 2020-07-16 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0737/2020
 A1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C21306T A23403G G25563T G26690T C28087T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_509805 MT846673
 2020-07-16 2020-08-05
 United States SARS-CoV-2/human/USA/IL-UW-987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T177C C241T C619T C1380T G2527A C3037T T7513C C14408T T14418C T15354C C15613T C18877T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509810 MT846687
 2020-07-16 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-1001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6238C C14408T C18486T A20268G C21721T TTA21991- T22162C A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509972 MT846660
 2020-07-16 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G A28624G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509976 MT846666
 2020-07-16 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10376T T13339C C14408T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509986 MT846677
 2020-07-16 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5339T C5893T C8140T C8208T C14408T C16260T C22329T A23403G G25440T G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509990 MT846681
 2020-07-16 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C1059T C2607T C3037T C14408T A14634G C18555T A23403G G25563T C28892T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510724 LR882192
 2020-07-16 2020-08-07
 Switzerland 200036
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T G5950K T6963Y T6979Y G10097R C13536T C14408T G19732T G20931T A23403G C23731T GGG28881AAC C29730Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510725 LR882183
 2020-07-16 2020-08-07
 Switzerland 200037
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A535W G553K T582Y A642M C2485Y C3037T T3144K G3617R T3727K G4255A A5563R T5834C C8419Y G10265A C14408T A15972G A16210W C16293Y G16322S A16387R C17617Y T17675Y C19718T A23403G G23900C A25859G G28300C T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510726 LR882193
 2020-07-16 2020-08-07
 Switzerland 200038
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T6942Y G10265A T12069W C14408T C15720T A15972G C19718T A21323G A23403G G26700T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510727 LR882185
 2020-07-16 2020-08-07
 Switzerland 200039
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1535R C3037T A3054M T3144K G10265A C14408T C15720T A15972G T17675Y C19718T A21323G A23403G G26700T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510729 LR882191
 2020-07-16 2020-08-07
 Switzerland 200043
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T A642M A2905W T3012Y C3037T T3144K T3723Y T5327Y T5530W C5540M G6532K T6969Y G8934A C10319T C14408T A23403G GGG28881AAC C29485T A29507C AA29767RW ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866R

EPI_ISL_512523
 2020-07-16 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T C14980Y G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512539
 2020-07-16 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T3049C C14408T T15555C G21624T A23403G G27877T A28523G GGG28881AAC A29903-

EPI_ISL_513584
 2020-07-16 2020-08-13
 United Kingdom hCoV-19/England/BRIS-133610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3261Y T6615C A11228G C14408T C17795Y ATTACC21993- A23403G G24356S G25563T C28887T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515061
 2020-07-16 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G T27922C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515592
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002194/2020
 AT1- C241T C823T C3037T C3811T C9532T C14396T C14408T C16338T C18508T A23403G C25169T C25797T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515600
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002202/2020
 ATTAAAGGT1- C241T T490A C3037T C9857T C14408T A23403G A23920G A26530G G27561T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_515645
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C14408T G17938A A20268G A23403G G26144A T29623C G29736T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515801
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001122/2020
 ATTAA1- C241T T2029C C3037T C14408T C16376T A23403G C24034T C29743T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_515841
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1063T T2432C C3037T C14408T G16853T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_515842
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001357/2020
 ATTAAAG1- C241T C2005T C3037T T3256C C4002T C6701T G8179T G10097A C13536T C14408T G17427T C18747T A23403G C23731T CA28253TC GGG28881AAC G29425T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_515844
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001359/2020
 C241T C3037T A7064G C11671T C13059T C14408T C22675T A23403G C24795T C26151T C26340T T27384C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515845
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001360/2020
 ATTAAAGGTTT1- C241T C3037T C6762T T12503C C12781T C14408T A23403G G25455T G25770T G28077C A28266G GGG28881AAC C29721T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515846
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001361/2020
 AT1- C241T C3037T C4002T G10097A G11083T T12016A C13536T G13659A G14290T C14408T C18747T A23403G C23731T G24038T GGG28881AAC G29425T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515849
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001364/2020
 ATTA1- C241T C3037T C8090T C14408T T16062C C22675T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515850
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001365/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T A7064G C13059T C14408T C22675T A23403G T27384C G27967T GGG28881AAC G29477T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515851
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001366/2020
 AT1- G174T C241T C3037T C7119T C7299T C9857T G9890A C14408T C16215T A23403G A23920G A26530G G27561T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515852
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001367/2020
 ATTAAAGG1- C241T C3037T C14408T T16062C C22675T A23403G C26527T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515854
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001369/2020
 AT1- C241T C1063T C2094T T2432C C3037T C14408T G16853T A23403G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_515856
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001371/2020
 AT1- C241T C1063T C2094T T2432C C3037T C14408T G16853T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515859
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1748A C3037T A7064G A11537G C14408T C22675T A23403G A24078T GGG28881AAC C29137T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_515860
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C203T C241T C3037T A7064G C14408T C22675T C22987T A23403G C24061T T27384C C28639T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515861
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001376/2020
 A1- C241T C1063T C2094T T2432C C3037T C14408T G16853T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515862
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T T12503C C14408T C16490T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515877
 2020-07-16 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001393/2020
 ATTA1- C241T C3037T C11976T T12503C C14408T C22550T A23403G GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_516445 MT928973
 2020-07-16 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G188T C241T C1059T C1593T C3037T C10319T C13994T C14408T A23403G G25563T C27964T G28939T C29375T G29690A C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517900 MT966197
 2020-07-16 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1010/2020
 ATTAA1- C241T C1059T C2536T C3037T C10376T C14408T C14931T A23403G C24082T G25563T C25603T C27005T A28880G C29363T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518394 MT972947
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C8099T C14120T C14408T G16647T C17850T C18555T G22992A G23401A A23403G G24926T A25592G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518395 MT972948
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C8099T C14408T G16647T C17850T C18555T G22992A G23401A A23403G G24926T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518398 MT972951
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518399 MT972952
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518401 MT972954
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G557T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518426 MT972957
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26447T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518428 MT972959
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518429 MT972960
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518433 MT972964
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518434 MT972965
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5620/2020
 ATTAAAGGTTTATACCTTCCC1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518435 MT972966
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26447T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518436 MT972967
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518438 MT972969
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7528T T7540C C12153T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518439 MT972970
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C25638T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518442 MT972973
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_518443 MT972975
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_518444 MT972976
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A10055G C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518445 MT972977
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G T25722C C27945A GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518446 MT972978
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518448 MT972980
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518449 MT972981
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518452 MT972984
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G18859T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518453 MT972985
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G G26951T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518454 MT972986
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518456 MT972988
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5645/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518457 MT972989
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518459 MT972991
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518460 MT972992
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518461 MT972993
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C14768T G16647T A17337G C18555T A19073G C19151T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518462 MT972994
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518723 MT972974
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518799
 2020-07-16 2020-08-25
 Suriname hCoV-19/Suriname/SR-50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C218T C241T G1843T C3037T C11750T C12068T C14408T C15324T C16193T C16989T C18060T C21658T A22404T C22450T A23403G C28253T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518801
 2020-07-16 2020-08-25
 Suriname hCoV-19/Suriname/SR-52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C15324T C16193T C18060T A22404T C22450T A23403G C28253T C28751A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518802
 2020-07-16 2020-08-25
 Suriname hCoV-19/Suriname/SR-53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G704A T1813A C3037T C8860T C13356T G14209T C14408T C15324T C16193T C18131T A22404T A23403G C25549T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518803
 2020-07-16 2020-08-25
 Suriname hCoV-19/Suriname/SR-54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C15324T C16193T C18060T A22404T C22450T A23403G C28253T C28751A A29663G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518804
 2020-07-16 2020-08-25
 Suriname hCoV-19/Suriname/SR-55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G704A G714T T1813A C3037T G14209T C14408T C15324T C16193T C18131T A22404T A23403G C25549T C28312T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518805
 2020-07-16 2020-08-25
 Suriname hCoV-19/Suriname/SR-56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2097T T2537C C2710T C3037T C10138T C14408T A18777G C20235T C20759T A23403G C23802T T27299C C27923T G28077T GGG28881AAC T29148C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518806
 2020-07-16 2020-08-25
 Suriname hCoV-19/Suriname/SR-57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G704A T1813A C3037T C14408T G14712T C15324T C16193T C18086T C18131T A22404T A23403G C25549T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518808
 2020-07-16 2020-08-25
 Suriname hCoV-19/Suriname/SR-59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G704A T1813A C3037T C14408T C15324T C16193T C18131T C20259T A22404T A23403G C25549T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518809
 2020-07-16 2020-08-25
 Suriname hCoV-19/Suriname/SR-60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C15324T C16193T C18060T A22404T C22450T A23403G C28253T C29269T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518810
 2020-07-16 2020-08-25
 Suriname hCoV-19/Suriname/SR-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G704A T1813A G2531T C3037T C14408T C15324T C16193T C18131T C20259T A22404T A23403G C25549T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518812
 2020-07-16 2020-08-25
 Suriname hCoV-19/Suriname/SR-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2097T T2537C C2710T C3037T C14408T A18777G A23403G C23802T C24023T T27299C C27923T GGG28881AAC A28998G T29148C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518901 MT970816
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518902 MT970817
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4491/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A T23017G G23401A A23403G C23895T GGG28881AAC

EPI_ISL_518906 MT970822
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_518907 MT970824
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518908 MT970825
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6982T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_518909 MT970826
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518919 MT970713
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518921 MT970718
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518926 MT970750
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C11195T C14408T G16647T C18555T G22894T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518927 MT970762
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518928 MT970771
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C G11387A C13011T C14408T G15907T G16647T C18555T A20437G G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518929 MT970775
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T A1163T C2902T C3037T T7540C C14408T G16647T C18555T C20148T G22992A G23401A A23403G C27972A C28754T GGG28881AAC

EPI_ISL_518930 MT970779
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518931 MT970780
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518939 MT970801
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518940 MT970803
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_518941 MT970804
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4530/2020
 ATTAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_518943 MT970806
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518944 MT970809
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T A19548G G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518946 MT970814
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518948 MT970818
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A T23017G G23401A A23403G C23895T GGG28881AAC

EPI_ISL_518949 MT970823
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519052 MT970513
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519054 MT970828
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G27632T GGG28881AAC

EPI_ISL_519056 MT970832
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4668/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T C14877T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519057 MT970833
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519059 MT970835
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519060 MT970836
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4672/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519063 MT970840
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4675/2020
 ATTAAAGGTTTATACCTTCCC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G27632T GGG28881AAC

EPI_ISL_519065 MT970842
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519073 MT970852
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4685/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C T11554C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519082 MT970876
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C9534T C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519087 MT970882
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519093 MT970892
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4705/2020
 AT1- A4T C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519094 MT970893
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519095 MT970894
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4707/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519096 MT970895
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519098 MT970897
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519099 MT970898
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519100 MT970899
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519130 MT970936
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4742/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23758T GGG28881AAC

EPI_ISL_519133 MT970939
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519137 MT970948
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T G17847A C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519139 MT970951
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519140 MT970954
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519141 MT970956
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519143 MT970959
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519144 MT970960
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4756/2020
 ATTAAAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_519198 MT970934
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519200 MT970942
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC C29200T

EPI_ISL_519213 MT970970
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C12823T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29353T

EPI_ISL_519377 MT970348
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T11561A C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519378 MT970349
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519379 MT970350
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T C4421T T7540C C11355T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519393 MT970303
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519525 MT970502
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519530 MT970509
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519531 MT970511
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519532 MT970512
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17762T C18555T G18937A C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519543 MT970536
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3738T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519555 MT970548
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519562 MT970565
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C676T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519568 MT970571
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC

EPI_ISL_519569 MT970573
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4241/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519571 MT970575
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519617 MT970562
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519619 MT970564
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519620 MT970572
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T26025C GGG28881AAC

EPI_ISL_519710 MT970714
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3796T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519711 MT970715
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4415/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519713 MT970719
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6627T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519716 MT970722
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4420/2020
 ATTAAAG1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519718 MT970724
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4422/2020
 ATTAAAGGTTTAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519722 MT970730
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2937T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519723 MT970731
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519733 MT970457
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22487C G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519734 MT970458
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519735 MT970459
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC

EPI_ISL_519736 MT970461
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519737 MT970462
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519738 MT970463
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C3498T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519739 MT970464
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26873T GGG28881AAC

EPI_ISL_519740 MT970465
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519741 MT970466
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519742 MT970751
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519743 MT970752
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519744 MT970753
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519745 MT970754
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_519746 MT970755
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A18504G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519747 MT970756
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519748 MT970757
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_519749 MT970758
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519750 MT970759
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519751 MT970760
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519752 MT970761
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519754 MT970764
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25665T GGG28881AAC

EPI_ISL_519755 MT970765
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4459/2020
 ATTAAAGGTTT1- C241T A1163T C3037T C6033T T7540C A8703G C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519756 MT970766
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519758 MT970768
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4087G T7540C T10520C C14408T G16647T C18032T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519761 MT970772
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C12733T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519762 MT970773
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15615T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519763 MT970774
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2902T C3037T T7540C C14408T G16647T C18555T C20148T G22992A G23401A A23403G C28754T GGG28881AAC

EPI_ISL_519764 MT970776
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T C16393T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519766 MT970778
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519780 MT970802
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A3051G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C25549T GGG28881AAC

EPI_ISL_519781 MT970807
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519782 MT970808
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4240C T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519783 MT970810
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3738T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519784 MT970811
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T A1163T C3037T A6248G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519790 MT970501
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25572T GGG28881AAC

EPI_ISL_519792 MT970508
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519793 MT970510
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC

EPI_ISL_519806 MT971031
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519816 MT971041
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C8099T C14408T G16647T C17850T C18555T G22992A G23401A A23403G G24926T GGG28881AAC

EPI_ISL_519824 MT971049
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519825 MT971050
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519834 MT971059
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519841 MT971069
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC

EPI_ISL_519844
 2020-07-16 2020-08-25
 Australia hCoV-19/Australia/VIC5040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17894T C18555T G22992A G23401A A23403G CTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATCATCACAACTGTAGCTGCATTTCACCAAGAATGTAGTTTACAGTCATGTACTCAACATCAACCATATGTAGTT27884- GGG28881AAC

EPI_ISL_519872 MT971102
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519966 MT971219
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5201/2020
 ATTA1- C66T C241T A1163T C3037T C6543T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C25066T GGG28881AAC

EPI_ISL_519976 MT971231
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519980 MT971248
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519988 MT971282
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5223/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22987T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519989 MT971283
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G18973T C21005T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519990 MT971287
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5225/2020
 ATTAAAGGTTTATAC1- C16M C241T A1163T C3037T C4940T T7540C C14408T G16647T C18555T C19983T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519993 MT971317
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520028 MT971193
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C8480T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520058 MT971246
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520059 MT971247
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520061 MT971250
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5298/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520062 MT971251
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520087 MT971285
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5324/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520095 MT971295
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520098 MT971298
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520142 MT971350
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520143 MT971351
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520208 MT972934
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17012T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520209 MT972935
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C8099T C14408T G16647T C17850T C18555T G22992A G23401A A23403G G24926T GGG28881AAC

EPI_ISL_521348 MT973033
 2020-07-16 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC C29754T

EPI_ISL_522514
 2020-07-16 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2735/2020
 AT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_522515
 2020-07-16 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2736/2020
 ATTAAAGGTTTATA1- C241T C3037T G9086A T11569C C14408T A23403G GGG28881AAC G28899T T29867A

EPI_ISL_522517
 2020-07-16 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2738/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T ACAAAAAAAAAAAAAA29869-

EPI_ISL_523732
 2020-07-16 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C622T C3037T G4657T T5182C C11758T C13059T C14408T C15324T G16846T C16887T C18744T A23403G C25075T C25904T C29733T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525728 MT946869
 2020-07-16 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2738/2020
 ATTAAAGGTTTAT1- C241T C3037T A4372G C14408T C15933T G16968T G19009T T19839C A23403G G24193T GGG28881AAC G28922T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525729
 2020-07-16 2020-09-01
 United States hCoV-19/USA/WA-S2739/2020
 ATTAAAGGTTTAT1- C241T C1057T G2282A C3037T C4073T C8118T T9742C C14408T A16347G C17639T G18002T A23403G C27128T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525730
 2020-07-16 2020-09-01
 United States hCoV-19/USA/WA-S2740/2020
 ATTAAAGGTTTAT1- C241T C335T C593T C1059T C3037T T5290C C14408T T16425G C17639T T19704C A23403G G25563T C26455T T29772A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_525731
 2020-07-16 2020-09-01
 United States hCoV-19/USA/WA-S2741/2020
 ATTAAAG1- C241T C335T C593T C1059T G1820A C3037T T5290C C14408T T16425G C17639T T19704C A23403G G25563T C26455T T29772A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525732
 2020-07-16 2020-09-01
 United States hCoV-19/USA/WA-S2742/2020
 ATTAAAGGTTTATA1- C241T C335T C593T C1059T C3037T T5290C C8247G C14408T T16425G C17639T T19704C A23403G G25563T C26455T T29772A T29822C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_526304
 2020-07-16 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97C929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526305
 2020-07-16 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97C947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526309
 2020-07-16 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97CB9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526310
 2020-07-16 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97CBAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7991A C14408T C18877T C20199T A23403G G25563T G25644T C26139T C26735T T27634C G28857T G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526855
 2020-07-16 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0733/2020
 ATTAAAGGTT1- C241T C3037T G4201T G5539A C8664A G8851A C14408T T22573C A23403G A25505C G28747T GGG28881AAC G29474T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_526856
 2020-07-16 2020-09-02
 United States hCoV-19/USA/VA-DCLS-0734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5539A C8664A G8851A C14408T T22573C A23403G A25505C G28747T GGG28881AAC C29738T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527594 MT958226
 2020-07-16 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G23856T G28373T C28854T G29747A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_529570
 2020-07-16 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9859E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3885T C4002T C6762T G10097A T11731C C13536T C14408T G21800T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529571
 2020-07-16 2020-09-10
 United Kingdom hCoV-19/England/ALDP-985A57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529665
 2020-07-16 2020-09-10
 United Kingdom hCoV-19/England/HECH-259A53E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189A C241T C3037T A4297G A4762G A5040G C14408T A23403G C23638T AG28877TC GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532856
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7AE8E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532972
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-75FCBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T T7222A C14408T G16700T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532973
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-761D0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T T7222A C14408T G16700T A23403G G26506A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532975
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-760ED0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G A23592T C23731T C24912T G25440T C27970T C28674T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532981
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-75E998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T T7222A C14408T G16700T A23403G G26506A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532998
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-762111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T T7222A C14408T G16700T A23403G T27531C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533016
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-789563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C5339T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533025
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-77D8A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815Y C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533026
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-781A3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T T19839C C21646T C23220Y A23403G A24205T C27612Y G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533027
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-7894C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28054T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533035
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-77C976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A A10844G T10992C C11001T C14408T C15757A A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533050
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-76ABFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G599A T2153A C3037T C14408T A23403G G26589C A27083G C27128T GGG28881AAC C29520T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533067
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-77BD4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533074
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-77D7B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533082
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-77DAAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533097
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-77BC14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533101
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-781BF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC G28922K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533115
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-76BE6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533125
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-76BC17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533160
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-76BF2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533163
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-780AF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T G11083K C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533167
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-79C5B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T G8371T G11083T C14408T C17746T G19962T C22477T A23403G G25563T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533190
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-77BCE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533200
 2020-07-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-780766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534338
 2020-07-16 2020-09-14
 Russia hCoV-19/Russia/CRIE4955821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C2939T C3037T C3885T C11289T C14408T G15906A T19839C A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_534339
 2020-07-16 2020-09-14
 Russia hCoV-19/Russia/CRIE4991898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T A23403G C26071T C28312T GGG28881AAC C29733T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_534340
 2020-07-16 2020-09-14
 Russia hCoV-19/Russia/CRIE5027243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C3373A C6883T C10977T C14408T G21724A A23403G G26842A GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_534341
 2020-07-16 2020-09-14
 Russia hCoV-19/Russia/CRIE5006606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T A1876C C3037T A4297G A5040G C6027T C14408T T14652C A23403G C25886T C26585T T27384C C27427G GGG28881AAC G29645T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_534342
 2020-07-16 2020-09-14
 Russia hCoV-19/Russia/CRIE4980432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T G19827T A23403G T23672G T28340C GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_534343
 2020-07-16 2020-09-14
 Russia hCoV-19/Russia/CRIE5047362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1380T C3037T C14408T C20178T A23403G GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_534344
 2020-07-16 2020-09-14
 Russia hCoV-19/Russia/CRIE5047007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C7564T C14408T C16887T T19839C G23288A A23403G G24410T G25217T C27654T GGG28881AAC C28905T CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_547621
 2020-07-16 2020-09-24
 United States hCoV-19/USA/WI-GMF-10983/2020
 ATTA1- T13C C241T G2035T C3037T T3532C T9022C C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547622
 2020-07-16 2020-09-24
 United States hCoV-19/USA/WI-GMF-11002/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C715T C1059T G2036T C3037T G4399T C11916T C14408T G23311T A23403G A23586G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547667
 2020-07-16 2020-09-24
 United States hCoV-19/USA/WI-GMF-M00016/2020
 ATTAAAGGTTTATACCT1- C241T T661C C715T C1059T G2036T C3037T C11916T C14408T C14925T G23311T A23403G A23586G G24193T G25563T C28253T G28812T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548279
 2020-07-16 2020-09-26
 United States hCoV-19/USA/CA-CZB-3279/2020
 ATTA1- C241T C1059T C2668T C3037T G3109T G9479T A10621G C14408T C18167T A23403G G25563T G28209C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548529
 2020-07-16 2020-09-26
 United States hCoV-19/USA/CA-CZB-3869/2020
 ATTAAA1- C241T C3037T C9226T C14408T G16639T A20268G C21844A A23403G T24076C C28854T G29140T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_548631
 2020-07-16 2020-09-26
 United States hCoV-19/USA/CA-CZB-4053/2020
 ATTAAAGGTTTATACCT1- C241T C1288T C3037T C11575T T11601C C14408T C17339T C18060T A19526G A20268G G22487C A23403G C24068G C28854T C28948Y G29081K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548644
 2020-07-16 2020-09-26
 United States hCoV-19/USA/CA-CZB-4054/2020
 ATT1- C241T C3037T C14408T C16114T A20268G C21855T G23311C A23403G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_548663
 2020-07-16 2020-09-26
 United States hCoV-19/USA/CA-CZB-4057/2020
 AT1- C241T C1427T C1594Y C3037T G14346T C14408T G14874T T18099C A20268G A23403G C28854T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_548671
 2020-07-16 2020-09-26
 United States hCoV-19/USA/CA-CZB-4056/2020
 ATTAAA1- C241T C1059T C3037T A6716G A8252G C9360T C10889T C14408T T22306C A23299G A23403G G25311T G25563T C29708T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_556659
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94BEE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G11906C A12180G C14408T A19228G A23403G C23731T C26198T G28580T C28720T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556666
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94AD46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556668
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945C6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556688
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945F90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556693
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945BE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C10078T C14408T A23403G C23635T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556704
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94BF21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T G11083T G12728A C14408T G18803T A23403G C27807T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556727
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945EFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3403T A6308C C14408T T19839C TGG21294AAA A23403G G25793T C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556728
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94C360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2501G C3037T C6395T G10565C G11804A A12410G C14408T A18366G C18788T T19839C T21093C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556731
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945B7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556740
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946B22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T G14712T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T T25992C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556744
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94BC1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556755
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B57A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505Y G872K A2929R C3037T C3261Y C6726Y G12067K C14408T A15984W C18959Y C20946Y C21637Y C22075Y A23403G A26748R C27945Y G28086K A28169R GGG28881AAC C29750Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556763
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945B23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556764
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948B5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T ATG3546- A4926C C12651T C14408T G14923A G21624T C22006T A23403G G25699A C26270T G28628T GGG28881AAC A29403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556773
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G A27400G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556776
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94BC39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T C4901Y T5507A G11083T C14408T A20268G C21614T G22225K A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556789
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7528Y C10202T G11447A C14408T C17135T C21648T A23403G C28312T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556792
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556794
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9451A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9438T C14408T A16278G G16558T G21974C C22713T A23403G GTT26155- C27630T GGG28881AAC G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556797
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946E65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2501G C3037T C6395T G10565C G11804A A12410G C14408T A18366G C18788T T19839C T21093C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556808
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94956D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C2252A C3037T G11243T C14408T T18723C A20268G A23403G G25720T C26882T C27532T C28854T C29085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556810
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94881A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C11379T C14408T C22000T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556820
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946C89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G7360T T10453C G11083T C11195T C14408T A23403G A25003G GGG28881AAC G29779K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556916
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94671F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T G12067T C14408T A15984T C18959T C20946T C22075T A23403G C27945T G28086T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556934
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3549A C5173T A9433T G10265A C10401T C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556964
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9466B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556970
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946B13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T G14712T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T T25992C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557171
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-80EFB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C12534T C14408T C15656T C19488T A23403G C26527T T27221C C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557172
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-803C6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557175
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-83247A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C6968T C14408T A15984T G17790T C20946T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557177
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-840B47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C2252A C3037T G11243T C14408T T18723C A20268G A23403G G25720T C27532T C28854T C29085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557179
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-83A964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C853T C3037T C5482T C11704T C14408T G17944T G18186T C18747T A22182G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557183
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-837C9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C5621T G9479T C14408T A20288C A23403G G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557185
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-800527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G443T C815T G1397A C1912T G2246A C2892T G5690A G7295T G11083T C16178T G18412A C20132T A23586G C26822T A28358G G28373T T28688C G28703T G28975T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557191
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-848D67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2679G C3037T G11842A A12759G C14408T G18292T A20268G A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557198
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-825C54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G680A C3037T C9120T C14120T C14408T C18032T C20233T A23403G G24926T A27674T GGG28881AAC A29350G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557202
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-846C02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3569G C3695T A6211G A8659G A9883G C14408T C19488T A23403G TTG25532- C26527T C28391T GGG28881AAC C29722T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557206
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-837C04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4596T T11915G A11992T C12100A C14322T C14408T G23120T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557210
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-82E3ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T T13529C C14408T C21057T G22205T A23403G G25647T C27059T G27670T G28739T GGG28881AAC C29642T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557211
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-8274D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T T13529C C14408T C21057T G22205T A23403G G25647T C27059T G27670T G28739T GGG28881AAC C29642T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557212
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-828A57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C841T C1714T C2048T C3037T T5092C C8092T A12507G A13516G C14408T G18816T G19999T A20268G C20451T A23403G A27675C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557214
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-81D527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C6968T C14408T A15984T G17790T C20946T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557217
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-817D52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25699T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557218
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-84812F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C2113T C3037T A5317G C14408T A16474G G17572T G20996T A23403G G25912T G26730T GGG28881AAC C29045T C29269A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557224
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-8009A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C853T C3037T C5482T C14408T G17944T G18186T C18747T A22182G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557226
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-804F61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C2113T C3037T A5317G C14408T A16474G G20996T C22675T A23403G G25912T GGG28881AAC C29045T C29269A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557233
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-80F591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4455T G7295T C12784T C14408T T22150C A23403G G23678T G25523T G25563T C27297T G28001T G28346T C28657Y G28917T C29247T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557235
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-839121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2453T C3037T C14408T C18664T G22918T A23403G G28396A GGG28881AAC G29227A G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557239
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-82D4AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C24912T G25440T C27970T C28674T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557246
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-82D937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T C18167A G18662C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557261
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-8461E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557264
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-817B76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C2113T C3037T A5317G C14408T A16474G G20996T A23403G G25912T GGG28881AAC C29045T C29269A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557267
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-83551A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G G11230T C14408T C19488T A23403G T25851C C26527T C28391T GGG28881AAC C29659T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557276
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-820819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3403T A6308C C14408T T19839C TGG21294AAA A23403G G25793T C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557288
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-82154E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C2570T C3037T C14408T C14790T C21058T C22082T A23403G C25896T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557289
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-847DFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C15656T C19488T A23403G C26527T T27221C C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557292
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-846947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C19488T G20433T A23403G C26527T C27603Y C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557297
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-84490D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A668T C2536T C3037T C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557300
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-8184B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13548T C13730T C14408T A15942G G23120T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557303
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-83982C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557319
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-837EFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T G11083T C13247T C14408T C14937T T18144C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557326
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-817C37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C2113T C3037T A5317G C14408T A16474G C18086Y G20996T A23403G G25912T GGG28881AAC C29045T C29269A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557333
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-808AF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T C3037T G5018A C9665T G11083T C14408T T18132C A23403G C24138T C24865T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557339
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-813E9F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C2113T C3037T A5317G C14408T A16474G G20996T A23403G G25912T GGG28881AAC C29045T C29269A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557343
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-83B7B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1473A C2416T C3037T C7604T G8371T C14408T C16726T G21641T C22227T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557348
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-828608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8981G G11083T C14408T C21637T C22550T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557393
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-8664F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T G18984T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557421
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-850A83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13548T C13730T C14408T A15942G G23120T A23403G G25429T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557520
 2020-07-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-870D93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8548T C11479T C14408T C23277T A23403G C24418T C27542T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560311
 2020-07-16 2020-09-28
 Russia hCoV-19/Russia/SVE-RII-MH197S/2020
 ATTAAAGGTT1- C241T C3037T C14408T C15857T A23403G GGG28881AAC C29274T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_560313
 2020-07-16 2020-09-28
 Russia hCoV-19/Russia/SVE-RII-MH199S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G4105T G11083T C14408T AA21312GG G22778C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_560643
 2020-07-16 2020-09-29
 France hCoV-19/France/IdF8761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561240
 2020-07-16 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-1968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C12469T C14408T A23403G C27765T GGG28881AAC C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562956
 2020-07-16 2020-09-30
 Australia hCoV-19/Australia/VIC10554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3564K T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563265
 2020-07-16 2020-09-30
 Australia hCoV-19/Australia/VIC11136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

MT919784
 2020-07-16 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-5658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2973T C3037T C11572T C14408T C18828T C20312T C21597T A23403G C26464T GGG28881AAC C29144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MT919785
 2020-07-16 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-5698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C593T C3037T G5924A C6525T G6943T C14408T G17278T C18395T T21775G A23403G GGG28881AAC C29784T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MT947552
 2020-07-16 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2741/2020
 ATTAAAG1- C241T C335T C593T C1059T G1820A C3037T T5290C C14408T T16425G C17639T T19704C A23403G G25563T C26455T T29772A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT947556
 2020-07-16 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2742/2020
 ATTAAAGGTTTATA1- C241T C335T C593T C1059T C3037T T5290C C8247G C14408T T16425G C17639T T19704C A23403G G25563T C26455T T29772A T29822C AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT947559
 2020-07-16 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2740/2020
 ATTAAAGGTTTAT1- C241T C335T C593T C1059T C3037T T5290C C14408T T16425G C17639T T19704C A23403G G25563T C26455T T29772A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

MT947572
 2020-07-16 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2739/2020
 ATTAAAGGTTTAT1- C241T C1057T G2282A C3037T C4073T C8118T T9742C C14408T A16347G C17639T G18002T A23403G C27128T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_498608
 2020-07-17 2020-07-27
 Singapore hCoV-19/Singapore/710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G3065T A3951G C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T AAAAAAAAAAAA29892-

EPI_ISL_498609
 2020-07-17 2020-07-27
 Singapore hCoV-19/Singapore/711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C1201T C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T G20487K C23929T C28253Y C28311T A29533G T29559K G29616T AAAAAAAAAAAA29892-

EPI_ISL_498610
 2020-07-17 2020-07-27
 Singapore hCoV-19/Singapore/712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G1821T C6310A C6312A G7560A A9419G G11083T C13730T G16089A A16464G C19524T T19530G G21974C C23929T C27323T C28311T AAAAAAAAAAAA29892-

EPI_ISL_498611
 2020-07-17 2020-07-27
 Singapore hCoV-19/Singapore/713/2020
 ATTAAAGGTTTATACC1- C6310A C6312A T6868C C9491T G11083T C13730T A14691G C19524T T22270C C23185T C23929T C28311T T29455G AAAAAAAAAAAA29892-

EPI_ISL_499269
 2020-07-17 2020-07-28
 United Kingdom hCoV-19/England/NOTT-112DA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_499969
 2020-07-17 2020-07-28
 United Kingdom hCoV-19/England/CAMB-1B55FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1620G T2343C C3037T C4002T A6604G G10097A C13536T G13936T C14408T A23403G C23731T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_501833
 2020-07-17 2020-07-31
 Latvia hCoV-19/Latvia/078/2020
 C241T A1202G C3037T C12513T C14408T C18877T A23403G G25563T C25710T G27877T G28881A

EPI_ISL_501839
 2020-07-17 2020-07-31
 Latvia hCoV-19/Latvia/079/2020
 C241T A1202G C3037T C12513T C14408T C18877T A23403G G25563T C25710T

EPI_ISL_504178 MT847214
 2020-07-17 2020-08-01
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_292/2020
 C241T C527T A1163T C3037T C3961T C14408T A23403G GGG28881AAC

EPI_ISL_509203
 2020-07-17 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3487T C11308T C14408T T15264C C16332T C19170T A23403G C25791T C28854T C29614T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509204
 2020-07-17 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11669T C14408T C15024T C16260T C20429A A23403G G25563T C28821A AAA29901-

EPI_ISL_509205
 2020-07-17 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14424G G18880T T19839C A23403G G24794T GGG28881AAC AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_509206
 2020-07-17 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11824T T12739C C14408T A18259G G18397A A20268G A23403G C28854T C28887T GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_509208
 2020-07-17 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2455T C3037T C6843T T12592C C14408T A20268G T22828C A23403G C28854T C28887T G29494A

EPI_ISL_509209
 2020-07-17 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3487T C11308T C14408T T15264C C16332T C19170T A23403G C25791T C28854T C29614T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509210
 2020-07-17 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T G4631A C6539T A12829G C14408T G18898T A23403G A25315G GGG28881AAC

EPI_ISL_509211
 2020-07-17 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6238C C14408T G17411T C17586T C18486T A20268G T22162C A23403G C28854T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_509212
 2020-07-17 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3949C C7768T C10228T T10480C C11575T C14408T A20268G A20761G G21850T G22289T A23403G T27484C C27600T C27945T C28854T

EPI_ISL_509213
 2020-07-17 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C12754T A14012T C14408T A23403G G25563T G28027T G29742T

EPI_ISL_509214
 2020-07-17 2020-08-05
 United States hCoV-19/USA/OR-OHSU-1487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T C3037T C14408T A20268G G20626T T22912G A23403G T24076C C25000T C25624T G27955T C28854T G29745T

EPI_ISL_509301
 2020-07-17 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T G11447A C14408T C22675T A23403G GGG28881AAC G29759T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_509357
 2020-07-17 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001110/2020
 ATTAAAGGTTTA1- C241T C3037T C4002T G10097A C13536T C14408T C18747T C20555T A23403G C23731T G28077C GGG28881AAC G29425T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_509358
 2020-07-17 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001112/2020
 A1- C241T A939G C3037T C14408T C20233T A23403G G23900C G28378C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_509360
 2020-07-17 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001114/2020
 AT1- C241T C3037T C14408T A23403G C23625T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509363
 2020-07-17 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11447A C12412T C14408T C22675T A23403G G28077T G28541T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509809 MT846686
 2020-07-17 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-1000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1463A G2305T C3037T G7557A C8818T C9969T C14408T C18377T A23403G G25563T G27047C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509814 MT846691
 2020-07-17 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-1005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4232T C9120T G11083T C14408T A18500G A19899T A21464G G22093A T23296C A23403G G25444A G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509971 MT846659
 2020-07-17 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T G18985T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510753 LR882209
 2020-07-17 2020-08-07
 Switzerland 210004
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C583T T3016Y T3031K C3037T A3097R T11672W C14408T T17675Y G22346K A23403G C25824T T27986C GGG28881AAC A29413T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510754 LR882216
 2020-07-17 2020-08-07
 Switzerland 210006
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1958R C3037T T6996Y T7026W G9130T C14408T C16111T A23403G C25844T T27319C G28487A G28541A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510755 LR882213
 2020-07-17 2020-08-07
 Switzerland 210007
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C186Y C241T C355Y C591Y A2389W C3037T T3144K C3543Y C7392Y G10265R A10982R C13225Y C13430T C14408T G15086K C15720T C15738Y A15972G C17274Y C17639Y G18292K C18747Y C19718T T20561Y G20569K C20589T C21707Y A23403G T24763C C25771Y G26700T C28253Y T28705Y T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510756
 2020-07-17 2020-08-07
 Switzerland hCoV-19/Switzerland/210008_627_G11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1572Y T2992W G3004S C3037T A3058M G10265A C13225T C13430T C14408T C15720T A15972G T17675Y C19718T G20569T C20589T C21707T A23403G T24763C G26700T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510786 LR882275
 2020-07-17 2020-08-07
 Switzerland 210048
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T6972W T7030K TTT7033KKK C8937Y G10265A C14408T C15720T A15972G C19041Y C19718T A23403G G23405C G26700T T27384C T28759Y GGG28881AAC G29527T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512494
 2020-07-17 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16968A/2020
 ATTAA1- C241T A435G C1437T C3037T C14408T A23403G G25775T C27807T GGG28881AAC G29745T

EPI_ISL_512532
 2020-07-17 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1698FD/2020
 ATTA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512834
 2020-07-17 2020-08-12
 Singapore hCoV-19/Singapore/798/2020
 ATTAAAG1- C1201T C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T A29533G G29616T AAAAAAAAAAAA29892-

EPI_ISL_512835
 2020-07-17 2020-08-12
 Singapore hCoV-19/Singapore/799/2020
 ATTAAAGGTT1- C241T T1947C C3037T C3261T C14408T G15380T C18877T C22120T C22444T A23403G G25563T C26735T C28854T AAAAAAAAAAAA29892-

EPI_ISL_512836
 2020-07-17 2020-08-12
 Singapore hCoV-19/Singapore/800/2020
 AT1- A27M C241T T1947C C3037T C3261T C14408T G15380T C18877T C22120T C22444T A23403G G25563T C26735T C28854T AAAAAAAAAAAA29892-

EPI_ISL_515056
 2020-07-17 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515062
 2020-07-17 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T T28009C G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515063
 2020-07-17 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C874T A1014G C3037T T6448A C6696T G12322T C14408T T18083C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515064
 2020-07-17 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515596
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002198/2020
 ATTAAAGGTT1- C241T A939G C3037T C3698T G11837A C12513T C14408T A23403G A28715G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515604
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T A4295G A7064G C14408T C22675T A23403G C25521T C26586T T27384C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515802
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001317/2020
 ATTAAAGGTTTATACCT1- C241T C3037T T7012A C8092T C14408T C19402T A23403G C27213T G28326T GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_515840
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001355/2020
 ATTA1- C241T C3037T G4255A A7064G C14408T C22675T A23403G T27384C GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_515848
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001363/2020
 AT1- C241T C3037T C6840T G11447A C14408T C22675T A23403G GGG28881AAC G29742T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_515858
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001373/2020
 ATTA1- C241T C3037T A7064G C9502A C13059T C14408T C22675T A23403G T27384C C28833T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515863
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001378/2020
 ATT1- C241T C3037T C14408T A23403G C23625T GGG28881AAC C29550T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515867
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C4090T G5950T T12503C C14408T C16490T G17280T G19962T A23403G C23854T G25770T A26901T GGG28881AAC C29721T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515868
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G515A C1912T C3037T C6363T T12503C C14408T G19086T A23403G G25770T C28744T GGG28881AAC C29721T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515870
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001386/2020
 C241T C3037T C4002T C4965T G10097A G11083T C13536T C14408T G15906T C18747T G20102T A23403G C23731T C23896T GGG28881AAC G29425T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515876
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T G515A C1912T C3037T C6363T T12503C C14408T G19086T A23403G G25770T C28744T GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515883
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001400/2020
 ATTA1- C241T T2029C C3037T C6573T C14408T C16376T A23403G C24034T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515884
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001401/2020
 ATTAAAGGTT1- C241T T2029C C3037T C6573T C14408T C16376T A23403G C24034T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515889
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001406/2020
 AT1- C241T T2029C C3037T C6573T C14408T C16376T A23403G C24034T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515892
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001409/2020
 A1- C241T C3037T G3167T G4218A A7064G A9972G C14408T C22675T A23403G C25521T C26586T T27384C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515893
 2020-07-17 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001410/2020
 ATTAAA1- C241T C3037T C4002T G10097A G11800T C12781T C13536T C14408T G15444A C18747T A23403G C23731T GGG28881AAC G29425T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516432 MT928960
 2020-07-17 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T G29734T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516437 MT928965
 2020-07-17 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T65C C241T T549C C3037T A3058G C7869T G10360A C14408T G15957T A23403G C25096T G25654T GGG28881AAC G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516438 MT928966
 2020-07-17 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2549A C3037T C9448T C10815T C14408T C14599T G15732T C19806T A20268G A23403G C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516443 MT928971
 2020-07-17 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C25276T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516925
 2020-07-17 2020-08-24
 Montenegro hCoV-19/Montenegro/ChVir-1793232002/2020
 ATTAAAGGTTTA1- C241T C3037T C4002T G5950T G10097A C13536T C14408T G19732T G20931T A23403G C23731T C25708T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_516926
 2020-07-17 2020-08-24
 Montenegro hCoV-19/Montenegro/ChVir-1794332002/2020
 ATTAAAGGTTT1- C241T C3037T C4002T G5950T G10097A C13536T C14408T G19732T G20931T A23403G C23731T C25708T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516927
 2020-07-17 2020-08-24
 Montenegro hCoV-19/Montenegro/ChVir-1796572002/2020
 ATTAAAGGTTTATA1- C241T C3037T C4002T G5950T G10097A C13536T C14408T G19732T G20931T G22918T A23403G C23731T C25708T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_517823 MT966199
 2020-07-17 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0933/2020
 AT1- C241T C1059T C3037T G7393T C10188T C14408T C17745T A23403G T24982C G25563T A26231C T27531C C27964T G28077C C29149T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_517825 MT966201
 2020-07-17 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0935/2020
 ATTA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C21306T A23403G G25563T G26690T C28087T

EPI_ISL_517827 MT966204
 2020-07-17 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0937/2020
 ATTAA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C21306T A23403G G25563T G26690T C28087T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_517828 MT966205
 2020-07-17 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0938/2020
 A1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C21306T A23403G G25563T G26690T C28087T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_517903 MT966206
 2020-07-17 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1013/2020
 A1- C241T C1059T C3037T C10319T C14408T G16710T G20176T C21757T A23403G A25121T G25563T C27964T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518037
 2020-07-17 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C5974T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_518463 MT972995
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518465 MT972996
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_518466 MT972997
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518467 MT972998
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518469 MT973000
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518470 MT973001
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518471 MT973002
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518920 MT970716
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4509/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518922 MT970726
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518924 MT970740
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518933 MT970787
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519062 MT970839
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21327T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519064 MT970841
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519069 MT970846
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4681/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519070 MT970847
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519071 MT970849
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4683/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519078 MT970871
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519079 MT970872
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519080 MT970873
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C11455T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519081 MT970875
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T A3954C T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519083 MT970878
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1593T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_519142 MT970958
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519145 MT970961
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519146 MT970963
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519147 MT970966
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519150 MT970969
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519151 MT970971
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T G526T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29272T C29546T

EPI_ISL_519152 MT970973
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4764/2020
 A1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519153 MT970975
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519154 MT970976
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4766/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T18843C C19217T G22992A G23401A A23403G GGG28881AAC G29348T

EPI_ISL_519156 MT970979
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A6248G T7540C T9124C C11494T C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519158 MT970985
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T T490C A1163T C3037T C7600T G7798T C11931A C14408T A23403G T23548C GGG28881AAC

EPI_ISL_519159 MT970986
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC C29837T

EPI_ISL_519161 MT970989
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4775/2020
 ATTAAAGGTTT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519162 MT970991
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519180 MT971021
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519187 MT970874
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18508T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519194 MT970908
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519204 MT970947
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519206 MT970952
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_519207 MT970953
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519209 MT970957
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519210 MT970962
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519215 MT970974
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T18843C C19217T G22992A G23401A A23403G GGG28881AAC G29348T

EPI_ISL_519220 MT970984
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4836/2020
 ATTA1- C241T A1163T C3037T C4438T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519221 MT970987
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519222 MT970990
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C6433T T7540C C12815T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519223 MT970996
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519231 MT971011
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519239 MT970848
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C2340T C3037T G3114T T7540C C14408T G16647T G17197A C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519241 MT970854
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5884T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519329 MT971074
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519330 MT971075
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519380 MT970468
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26078T GGG28881AAC

EPI_ISL_519381 MT970467
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G5230T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519382 MT970469
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519383 MT970470
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G5230T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519541 MT970531
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519561 MT970560
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519712 MT970717
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519714 MT970720
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4418/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519717 MT970723
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519719 MT970725
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A8976G C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519720 MT970727
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519721 MT970728
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519725 MT970733
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T G3114T T7540C A13711G C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC C29838A

EPI_ISL_519728 MT970736
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519729 MT970737
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519732 MT970741
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4436/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519759 MT970769
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519760 MT970770
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G8017A C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519765 MT970777
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519767 MT970781
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519770 MT970785
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T TTA516- A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519771 MT970786
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519773 MT970791
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_519785 MT970812
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A489G A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519803 MT971028
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_519812 MT971037
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G28917A

EPI_ISL_519817 MT971042
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T6199C T7540C C12513T C14408T G16647T C18555T C22480T G22992A G23401A A23403G TCTCTATCTTTA25707- GGG28881AAC G29737T

EPI_ISL_519826 MT971051
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519830 MT971055
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519835 MT971063
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T26783C T27785C GGG28881AAC A29865G

EPI_ISL_519836 MT971064
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519837 MT971065
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519838 MT971066
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTA28896-

EPI_ISL_519843 MT971071
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C17074T G18002A C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519852 MT971082
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519856 MT971086
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G21255C G22992A G23401A A23403G C28725T GGG28881AAC

EPI_ISL_519857 MT971087
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519858 MT971088
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519859 MT971089
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519863 MT971093
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5060/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18601G G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519864 MT971094
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519865 MT971095
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519870 MT971100
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519871 MT971101
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12115T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519873 MT971103
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519876 MT971106
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5073/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_519877 MT971107
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519878 MT971108
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G13514A C14408T G16647T A17337G C18555T G22992A G23401A A23403G C25889T G27750A C28253T GGG28881AAC

EPI_ISL_519880 MT971109
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983T G22992A G23401A A23403G GGG28881AAC G29751C

EPI_ISL_519882 MT971111
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519883 MT971112
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519884 MT971113
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C G8368A C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC

EPI_ISL_519885 MT971114
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519886 MT971115
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5083/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC

EPI_ISL_519887 MT971116
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28657T GGG28881AAC

EPI_ISL_519888 MT971117
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22825C G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_519889 MT971118
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519890 MT971119
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519891 MT971120
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_519892 MT971121
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G G25494T GGG28881AAC

EPI_ISL_519963 MT971213
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519964 MT971215
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5199/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519965 MT971217
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5200/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519978 MT971242
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC

EPI_ISL_519979 MT971243
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22825C G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_519984 MT971261
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519985 MT971263
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC C29200T

EPI_ISL_519992 MT971311
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23270T G23401A A23403G A26963G C27059T GGG28881AAC

EPI_ISL_520000 MT971344
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520005 MT971355
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C12786T C14408T G16647T C18555T C19102T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520008 MT971372
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520031 MT971197
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520041 MT971212
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520042 MT971214
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A25193C A26162G GGG28881AAC

EPI_ISL_520043 MT971216
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22498T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520044 MT971218
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21774T T22825C G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_520046 MT971230
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520047 MT971232
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5282/2020
 ATTA1- C241T A1163T C3037T C5365T T7540C C10741T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520048 MT971233
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520052 MT971237
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520053 MT971238
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520057 MT971245
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24351T GGG28881AAC C29218T

EPI_ISL_520069 MT971262
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC

EPI_ISL_520072 MT971266
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T A19548G G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520073 MT971267
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC G29579A

EPI_ISL_520085 MT971281
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C66T C241T A1163T C3037T G4006T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520086 MT971284
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C17999T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC C29838T

EPI_ISL_520089 MT971288
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520093 MT971292
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520094 MT971293
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520099 MT971299
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5336/2020
 ATT1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520110
 2020-07-17 2020-08-25
 Australia hCoV-19/Australia/VIC5347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A G27754T GGG28881AAC

EPI_ISL_520112 MT971312
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC

EPI_ISL_520113 MT971313
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T GT5743CC T7540C C14408T G16647T T18509G C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520114 MT971314
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520115 MT971315
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T11125C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520116 MT971316
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22498T G22992A G23401A A23403G C28863T GGG28881AAC

EPI_ISL_520117 MT971373
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520136 MT971341
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520137 MT971342
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21774T T22825C G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_520138 MT971343
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C14616T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520140 MT971348
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_520141 MT971349
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520147 MT971358
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC

EPI_ISL_521315 MT973003
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C26469T GGG28881AAC

EPI_ISL_521317 MT973005
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521318 MT973006
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521320 MT973008
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T A1163T C3037T T7540C C11620T C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521321 MT973009
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521323 MT973011
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_521325 MT973013
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G8201A C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521326 MT973014
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521327 MT973015
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6560/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T C3738T T7540C C10833T C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521329 MT973017
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6563/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A23418G GGG28881AAC C28961T

EPI_ISL_521330 MT973018
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521331 MT973019
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521332 MT973020
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC

EPI_ISL_521334 MT973022
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A1622G C3037T C5339T T6394C T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_521335 MT973023
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC

EPI_ISL_521338 MT973024
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6572/2020
 AT1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521339 MT973025
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G443A A1163T C3037T T7540C A7585C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521340 MT973026
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G443A A1163T C3037T T7540C A7585C C14408T G16647T C18555T G20578T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521341 MT973027
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G11083T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521342 MT973028
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521343 MT973029
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T C19151T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521345 MT973030
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6581/2020
 ATTAAAGGTT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521347 MT973032
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521349 MT973034
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521353 MT973038
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521354 MT973039
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C11109T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521355 MT973040
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521356 MT973041
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521364 MT973049
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21516T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521366 MT973051
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521370 MT973055
 2020-07-17 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12008T C14183T C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_522520
 2020-07-17 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2741/2020
 ATTAAAGGTTTATACC1- C241T C313T C3037T T4346C T8076C C9286T C10376T C14408T C14708T A23403G G27390T C28725T GGG28881AAC G29692T AAAAAAAAAAAAAAAA29888-

EPI_ISL_525733
 2020-07-17 2020-09-01
 United States hCoV-19/USA/WA-S2743/2020
 ATTAAAGGTTT1- C241T T2698C C3037T C10702T G11083T C14408T T16224C A20288G C21721T A23403G C23575T C23895T C26894T C28638A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525734
 2020-07-17 2020-09-01
 United States hCoV-19/USA/WA-S2744/2020
 ATTAAAGGTTT1- C241T T2698C C3037T C10702T G11083T C14408T T16224C A20288G C20611T C21721T A23403G C23575T C23895T C26894T C28638A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_526312
 2020-07-17 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97CC99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526313
 2020-07-17 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97CCB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526316
 2020-07-17 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97CCE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526317
 2020-07-17 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97CD0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526323
 2020-07-17 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97D357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526324
 2020-07-17 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97D384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3328T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526325
 2020-07-17 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97D393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526958
 2020-07-17 2020-09-02
 Colombia hCoV-19/Colombia/AG-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2647G C3037T G3483A G6077T C7420T C13536T G14055T C14408T A20268G C23086T A23403G T23443C C24381T G29674A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527595 MT958227
 2020-07-17 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1530/2020
 ATTAAAGGT1- A38W C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_527646
 2020-07-17 2020-09-04
 United States hCoV-19/USA/AR-CDC-4288/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T A29147G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527647
 2020-07-17 2020-09-04
 United States hCoV-19/USA/AR-CDC-4296/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T C15928Y G17110T G18538T C20823A A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527648
 2020-07-17 2020-09-04
 United States hCoV-19/USA/AR-CDC-4299/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528494
 2020-07-17 2020-09-07
 United States hCoV-19/USA/AK-PHL1418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2143T C3037T C6336T C14408T A20268G A21794G G21800T A23403G G25244T C29370G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532705
 2020-07-17 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-87C2F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532847
 2020-07-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7F32B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9165T C9700T G11083T C11747T C13378T C14408T T16452C A23403G A25175C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532860
 2020-07-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7AED33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4099T C4391A C14408T C15848T G18122A G19254T T19893C A23403G C25889T C26456T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532887
 2020-07-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7F2B36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9165T C9700T G11083T C11747T C13378T C14408T T16452C A23403G A25175C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532971
 2020-07-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-757470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C5621T G9479T C14408T A20288C A23403G G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532979
 2020-07-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-762B13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T C28754T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532982
 2020-07-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-764CB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532993
 2020-07-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7631F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A A10844G T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532997
 2020-07-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-768333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533001
 2020-07-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-7663F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C7765T G10097A C12473T C12534T C13536T C14408T C21156A A23403G G23593T C23731T C26151T C28846T GGG28881AAC G28908T G29000T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533149
 2020-07-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-76DD6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC C29738T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533201
 2020-07-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-76C5B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534345
 2020-07-17 2020-09-14
 Russia hCoV-19/Russia/CRIE5049919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C14408T T19839C G21824C A23403G G25555T GGG28881AAC CAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29769-

EPI_ISL_547623
 2020-07-17 2020-09-24
 United States hCoV-19/USA/WI-GMF-11060/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C4686T A10323G C14408T T15276A A23403G G25563T G28842T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547626
 2020-07-17 2020-09-24
 United States hCoV-19/USA/WI-GMF-11146/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T G2035T C3037T T3532C T9022C C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548266
 2020-07-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3289/2020
 ATT1- C241T C3037T T9640C G11858A C14408T G14730A A20268G C20759T C21997T A23403G T24076C G27996T G28436T C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_548269
 2020-07-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3307/2020
 ATTAAAGGT1- C241T C1059T C3037T A8252G C9360T C14408T A19051G C20703T A23299G A23403G C25231T G25311T G25563T A29282G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548280
 2020-07-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3318/2020
 ATTAAAGGTT1- C241T C1059T G2281A C3037T T3654A C11173T C12885T C14408T C16260T C21575T A23403G T24721C C25521T G25563T C27476T A28113C C28821A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548292
 2020-07-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3302/2020
 ATTAAAGGTT1- T76W C241T C1059T C3037T A6716G A8252G C9360T C10889T C14408T T22306C A23299G A23403G G25311T G25563T C29708T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548299
 2020-07-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCAC1- C241T C3037T C3369T C5467T C5826T C8389T C12249T C13487T A13898G C14408T C18086T A23403G G25563T C26151A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_548307
 2020-07-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATC1- C241T C346T C850Y C3037T C14408T C15857Y A20268G G21423T A23403G C24382T G26196C C28312T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548310
 2020-07-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAG1- C241T C3037T T9640C G11858A C14408T G14730A A20268G C20759T C21997T A23403G T24076C C25603Y G27996T G28436T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548316
 2020-07-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3314/2020
 ATTAAAGGT1- T10K C241T C1059T C3018T C3037T G3328T A8252G C9360T C13536T C14408T G15543T G17523T T17773A C17999T A23299G A23403G G25311T G25563T T28078C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548322
 2020-07-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3309/2020
 ATTAAA1- C241T C1427T C3037T G14346T C14408T G14874T T18099C A20268G A23403G G24781R C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548325
 2020-07-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3321/2020
 ATTA1- C241T C3037T G4211T T4270C C14408T T18964W A20268G C20759T A23403G T24076C C25613Y C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548326
 2020-07-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3368/2020
 ATTA1- C241T A2015G C3037T A6360G C9541T G10540T G11083T C14408T C20629T C23086Y A23403G C24502A GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548329
 2020-07-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3308/2020
 ATTA1- C203T C241T C1059T C2003T C3037T G3955A A4229G A5560G C5884Y G6653A G10121A C13887T C14408T T15993C A23403G G24410R G25563T G28975T G29254K A29833W TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548478
 2020-07-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATC1- C241T C1102T C3037T G4211T T4270C C14408T A20268G C20759T A23403G T24076C G27441T C28854T G29260T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548509
 2020-07-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3873/2020
 ATTA1- C228Y C241T T847C C1059T G1990T C2939T C3037T G3482A A5264G C9724T C11916T C14408T C16457T G18762T G18985T A19257G A23403G G25563T C26198T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548536
 2020-07-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-3868/2020
 AT1- T13C C241T C3037T C5622T C12778T C14408T A20268G C21742T A23403G C26907T C28854T C28887T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_556537
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9491D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C6629T C9286T C14408T G16935T C19763T G21123T A23403G C25037T G28321T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556560
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94763F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T C18687T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556647
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94C2EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATG518- C3037T C14408T TTTGGGTGTTTA21982- A23403G C25549T C25844Y GGG28881AAC G29736A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556654
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94A5D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556663
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94C3D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7360A C14408T C16575T T19839C T21854C A23403G C23481T A24730T A25741G C26681T A26793C T27285C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556684
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94C38E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C936T C1960T C3037T C5301T G11083T C13247T C14408T C14937T T18144C A23403G C26681T C28045T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556687
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94C03C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556691
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94BE60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T G5210A C14408T C15324T C17470T A23148G A23403G T27125C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556694
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9461D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T C9447T G10265A C14408T T17781C A19650G G21538A A23403G C26645T GGG28881AAC G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556702
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94AD0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9165T C9700T G11083T C11747T C13378T C14408T T16452C A23403G A25175C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556723
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9461C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G25775T C27807T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556738
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949FD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7299T G11083T C14408T A20268G C21614T A23403G C28603T C28854T C29167T G29648T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556739
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948A8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12145G C14408T C20759T C21676T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556745
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945B32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C14708T C19488T A23403G T25851C C26527T C28391T GGG28881AAC C29659T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556753
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949F7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10202T GTT11283- A11782G C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556772
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94BBF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556779
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94C01E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556780
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94BC57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556805
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C853T C3037T C5482T C14408T G17944T G18186T C18747T A22182G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556811
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C11152T C14408T T17742C A23403G C26058T GGG28881AAC A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556813
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946C7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556815
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946D86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C14708T C19488T A23403G T25851C C26527T C28391T GGG28881AAC C29659T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556924
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-945965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A G11837T C14408T C18807T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556951
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T G10265A C14408T C16887T A19650G G21538A A23403G C25378T G25440T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556955
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9464CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1554G C3037T T5507A G8525A G11083T C11200T C14408T A20268G C21614T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557174
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-8305A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C853T C3037T C5482T C14408T G17944T G18186T C18747T A22182G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557197
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-859ED9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9714T C14408T A23403G C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557204
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-83E64B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25867T T27264G C28006T C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557215
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-81E896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T C17750Y A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557220
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-82310C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9714T C14408T T17007Y A23403G C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557221
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-832823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557234
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-833312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2110T C3037T C7600T C11916T C13019T C14408T G14638T C16362T G18090A C18998T A23403G G25563T G25947C G27915A G29540A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557251
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-830360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C853T C3037T C5482T C14408T G17944T G18186T C18747T A22182G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557253
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-854278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C853T C3037T C5482T C14408T G17944T G18186T C18747T A22182G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557259
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-83DCA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2040Y C3037T C14408T A23403G C25867T T27264G C28006T C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557263
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-8328F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557273
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-81E3A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A919G C1912T T1947C C3037T G6364A T9440G C14408T C18877T A19892G C22444T A23403G G23593T G25563T C25583T G25595T C26533T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557311
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-84F8BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T A15219G G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557312
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-855C79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557344
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-8327EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557347
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-83D8EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557349
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-8524A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C3117Y T3163C C14408T A23403G T27856G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557352
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-852A09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G A27400G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557360
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-85C1DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T T3163C C14408T A23403G T27856G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557387
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-851FFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113Y C3037T C3117Y T3163Y G11083T C14408T A20268R C22997T A23403G A24532G C24865T G26951T T27856K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557391
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-8579E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20411G A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557396
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-8522E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557397
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-8523A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557427
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-86ECE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T G5210A C14408T C15324T C17470T A23148G A23403G T27125C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557429
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-851C31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C15688T C19488T A23403G T25851C C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557455
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-8664D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26918T GGG28881AAC T29464C C29733T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557457
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-85BE22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C147T C241T C3037T C14408T G21989T A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557459
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-870777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T A20251R G22899K A23403G C25207T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557463
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-863DFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557464
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-86BDF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C5621T G9479T C14408T T17751C A20288C T23338C A23403G C27944T G28476T GGG28881AAC G29449T G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557483
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-863DDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A15187G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557489
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-85324C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6112G C10202T G11447A C14408T C17135T C21648T A23403G C28312T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557498
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-863A23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A A11991R C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557508
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-871433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C6629T C9286T C14408T G16935T C19763T G21123T A23403G C25037T G28321T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557514
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-86C34D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C853T C3037T C5482T G13153A C14408T G17944T G18186T C18747T A22182G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557519
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-871A6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4456T C14408T C16394T C19170T G19509A A21509G A23403G G25906T GGG28881AAC T29568C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557529
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-85B587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7360A C14408T T19839C T21854C A23403G A24730T A25741G C26681T T27285C G28086T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557538
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-86E6AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C5621T G9479T C14408T A20288C A23403G G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557552
 2020-07-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-86F90C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C6968T C14408T A15984T G17790T C20946T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560312
 2020-07-17 2020-09-28
 Russia hCoV-19/Russia/SVE-RII-MH198S/2020
 C241T C3037T C14408T C15857T G22332T A23403G GGG28881AAC C29274T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_560314
 2020-07-17 2020-09-28
 Russia hCoV-19/Russia/SVE-RII-MH200S/2020
 ATTA1- C241T C3037T G4105T G11083T C14408T AA21312GG G22778C A23403G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_560315
 2020-07-17 2020-09-28
 Russia hCoV-19/Russia/SVE-RII-MH202S/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T G1738T C3037T G7798A C8772T T9607C G14350T C14408T C15720T A18774G A23403G T27029C C28868T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_560986
 2020-07-17 2020-09-30
 Sweden hCoV-19/Sweden/20-52419/2020
 C241T C3037T C14408T A23403G C24865T C25511T C25553T G27074A G28395A C28826T GGG28881AAC

EPI_ISL_560987
 2020-07-17 2020-09-30
 Sweden hCoV-19/Sweden/20-52426/2020
 C241T C1263T A1558G C1968T C3037T C4073T C10279T C14408T C20647T A23403G A23760G GGG28881AAC

EPI_ISL_561310
 2020-07-17 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-3055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T G14430C C16887T A20268G G22706T A23403G C26735T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562928
 2020-07-17 2020-09-30
 Australia hCoV-19/Australia/VIC10477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562949
 2020-07-17 2020-09-30
 Australia hCoV-19/Australia/VIC10532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22825C G22992A G23401A A23403G G26526T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563502
 2020-07-17 2020-09-30
 Australia hCoV-19/Australia/VIC11978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563531
 2020-07-17 2020-09-30
 Australia hCoV-19/Australia/VIC12163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C683Y A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T24749Y GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563890
 2020-07-17 2020-09-30
 Australia hCoV-19/Australia/VIC13950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A4681G T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563912
 2020-07-17 2020-09-30
 Australia hCoV-19/Australia/VIC13989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563919
 2020-07-17 2020-09-30
 Australia hCoV-19/Australia/VIC14001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564205
 2020-07-17 2020-09-30
 Australia hCoV-19/Australia/VIC7041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T C19151T G22992A G23401A A23403G C24130T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564565
 2020-07-17 2020-09-30
 Australia hCoV-19/Australia/VIC7670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565702
 2020-07-17 2020-09-30
 Australia hCoV-19/Australia/VIC9766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C16887Y C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568566
 2020-07-17 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-011/2020
 ATTAAAGGTTTATACC1- C241T C313T C3037T T4346C C9286T C10376T C14408T C14708T T22020C A23403G C28725T GGG28881AAC G29692T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

MT856452
 2020-07-17 2020-08-07
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_293/2020
 C241T C527T A1163T C1190T C3037T A4104G C14408T A23403G GGG28881AAC

MT919786
 2020-07-17 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-5918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C6726T G11083T C13051T C14408T C21597T A23403G A27224C G27632C G28378A GGG28881AAC C29144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MT947555
 2020-07-17 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2743/2020
 ATTAAAGGTTT1- C241T T2698C C3037T C10702T G11083T C14408T T16224C A20288G C21721T A23403G C23575T C23895T C26894T C28638A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT947560
 2020-07-17 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2744/2020
 ATTAAAGGTTT1- C241T T2698C C3037T C10702T G11083T C14408T T16224C A20288G C20611T C21721T A23403G C23575T C23895T C26894T C28638A GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT968052
 2020-07-17 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4288/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T A29147G AAAAAAAAAAAAAAAAAAAAA29883-

MT968053
 2020-07-17 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4296/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T C15928Y G17110T G18538T C20823A A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MT968054
 2020-07-17 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4299/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

MW001286
 2020-07-17 2020-09-14
 United States SARS-CoV-2/human/USA/307-NP-OP/2020
 C241T C3037T C14408T C18486T A20268G T22162C A23403G G25218T C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_498550 MT876607
 2020-07-18 2020-07-27
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_291/2020
 C241T A1163T C3037T C4113T G12070T C14408T C16596T C18131T C18457T A23403G A24383G GGG28881AAC

EPI_ISL_498784
 2020-07-18 2020-07-28
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_297/2020
 C241T A1163T C3037T T7207A T11343C C14408T C14649T A23403G G25116A GGG28881AAC G29557T G29736A

EPI_ISL_498785
 2020-07-18 2020-07-28
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_298/2020
 C241T A1163T C3037T C8692T G13379A C14262T C14408T C15738T C17999T A23403G GGG28881AAC

EPI_ISL_498786
 2020-07-18 2020-07-28
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_306/2020
 C241T T712A A1163T C3037T C5392T A11600G T12086C C14408T T16119C C19032T A23403G GGG28881AAC G29744T

EPI_ISL_498787
 2020-07-18 2020-07-28
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_307/2020
 C241T C292T A1163T C3037T A6019G C14408T A23403G G28083T C28132T GGG28881AAC G29779T

EPI_ISL_498817 MT847223
 2020-07-18 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_296/2020
 C241T A1163T C3037T C14408T C21575T G21974T A23403G A25369G G27882A G28300T G28681A GGG28881AAC

EPI_ISL_498818 MT847224
 2020-07-18 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_305/2020
 C106T C241T A1163T C3037T G3072A C6543T T9022C G14181C C14408T C17410T C19560T C21691T A23403G G23545A T24406C C27741T GGG28881AAC G29674T

EPI_ISL_501849
 2020-07-18 2020-07-31
 Latvia hCoV-19/Latvia/080/2020
 C241T C3037T C5787T G10265A C14408T C15720T A15972G C17285T C19718T A23403G G26700T T28759C G28812T GGG28881AAC C29067T

EPI_ISL_504179 MT847213
 2020-07-18 2020-08-01
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_295/2020
 C241T A1163T C3037T C14408T C18657T G22361T A23403G G23608T GGG28881AAC C29754T

EPI_ISL_509306
 2020-07-18 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001044/2020
 C241T G520T C3037T C14408T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_509307
 2020-07-18 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001045/2020
 ATTAAAGGTT1- C241T C3037T C4002T T8323C G10097A C13536T T14345C C14408T G18292T A23403G C23731T GGG28881AAC G28960T AAAA29900-

EPI_ISL_509312
 2020-07-18 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001054/2020
 C241T G520T C3037T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509325
 2020-07-18 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1462T C3037T A7064G C14408T C22675T A23403G C25521T T27384C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_509335
 2020-07-18 2020-08-05
 South Africa hCoV-19/South Africa/KRISP-K001082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3533C C3736T C3811T C14396T C14408T A17841G C21058T A23403G G28085T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_509812 MT846689
 2020-07-18 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-1003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1426T C3037T C14408T C18486T A20268G C21575T T22162C A23403G G25757T G27589T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512538
 2020-07-18 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_514244
 2020-07-18 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_387/2020
 C241T A1163T C3037T C14408T C22477T A23403G G24535T G26065T T27384C G28086T GGG28881AAC G29711T

EPI_ISL_515060
 2020-07-18 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2632T C3037T C3165T C5869T C7564T C14408T C19170T G19509A C19854T A23403G C24130T G25650T C26313T GGG28881AAC G29764C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515067
 2020-07-18 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515602
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002204/2020
 ATTA1- C241T C3037T A7064G C14408T C22675T A23403G C25521T C26586T T27384C GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515627
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T G6421T C14408T A23403G C28005T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515643
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T12503C C14408T A23403G GGG28881AAC C29721T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515644
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14408T C16915T C18747T A23403G C23731T GGG28881AAC G29425T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_515657
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T12503C C14408T A23403G GGG28881AAC C29721T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515803
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001318/2020
 C241T C3037T G6421T C8290T T12503C C14408T A23403G G23868T GGG28881AAC C29721T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515804
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001319/2020
 ATTAAAGGTTTATAC1- C241T C3037T G3764T C3811T C12439T C14396T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515805
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001320/2020
 ATT1- C241T A1139G C2509T C3037T C4002T A5638G C5869T G10097A G11083T T11104C C13536T C14408T A23403G C23731T C24023T G24197T G25650A GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515806
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4084T T5422C C7051T G7743T C12880T C14408T A20268G A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515807
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001322/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A17724G C20234T G21468T C22987T A23403G C26645T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515808
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001323/2020
 ATTA1- C241T G1458A G2164C C2509T C3037T C14408T G17122T A20268G A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515809
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T G2164C C3037T C5986T C6027T C7788T T9498C C13426T C14408T C16946T A20268G G23012C A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515810
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001325/2020
 ATTAA1- C241T C3037T G11447A C14408T C21306T C22675T A23403G C27371T G28077T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_515811
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001326/2020
 ATTA1- C241T C2094T C3037T C10341T C14408T G16853T A23403G C23991T C28115T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515812
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001327/2020
 ATTAAAGGTTTA1- C241T G2164C C3037T C4069T C14408T A20268G G21604T A23403G C29686T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_515813
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001328/2020
 A1- C241T C2094T C3037T C5339T G6309A T10573C C11669A C14408T G16853T G21452T C21772T A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515814
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C6762T T12503C T12828C C14408T C16887T A23403G G25770T C27434T GGG28881AAC C29721T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_515815
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001330/2020
 ATTAAAGGT1- C241T C3037T C5467T T12503C C14408T C16490T A23403G G25770T GGG28881AAC C29721T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_515823
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001338/2020
 ATTA1- C241T G2164C C3037T C14408T A20268G A23403G C28948T C29732T G29745T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_515872
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001388/2020
 ATTAAAGGTTTA1- C241T C3037T T7012A C12084T C14408T C19402T A23403G G27541A G28326T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515875
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001391/2020
 AT1- C203T C241T C1288T C3037T C4002T C8892T G10097A C13536T C14408T G17592T C19983T A23403G C23731T T25451C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_515878
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001394/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T A7064G C11195T C11941T C12081T C14408T C22675T A23403G GGG28881AAC C29137T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515881
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001398/2020
 ATTA1- C241T G515A C1912T C3037T T12503C C14408T G19086T A23403G G25523T G25770T C28744T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515882
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001399/2020
 ATTA1- C241T C3037T A3405G T12503C C14408T A23403G GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515885
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001402/2020
 ATTA1- C241T C3037T A3405G T12503C C14408T G18907T A23403G G27990A GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515886
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001403/2020
 ATTA1- C241T C3037T A3405G T12503C C14408T G16853T A23403G GGG28881AAC C29721T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515887
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001404/2020
 ATTA1- C241T C3037T A3405G T12503C C14408T A23403G GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515888
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C12499T T12503C C14408T G19525T G22841A A23403G G25770T GGG28881AAC C29721T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515890
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C203T C241T A1146G C1288T C3037T C4002T G10097A C13536T C14408T G17592T C19983T A23403G C23731T T25451C G28302C GGG28881AAC CGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29743-

EPI_ISL_515891
 2020-07-18 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001408/2020
 ATTA1- C241T C3037T A3405G T12503C C14408T A23403G C27549A GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_516727
 2020-07-18 2020-08-21
 United States hCoV-19/USA/CA-CZB-3652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C313T C3037T C14408T A19682G A23403G T27645A G27666A GGG28881AAC C29640T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_516728
 2020-07-18 2020-08-21
 United States hCoV-19/USA/CA-CZB-3653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACA1- C313T C3037T A11996R C14408T C18312Y A19682R G22785S A23403G C27005Y T27645A G27666A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_516729
 2020-07-18 2020-08-21
 United States hCoV-19/USA/CA-CZB-3654/2020
 ATTAAAGGTTTATACC1- C241T C313T C3037T C14408T G22785C A23403G G25244T T27645A G27666A GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_516730
 2020-07-18 2020-08-21
 United States hCoV-19/USA/CA-CZB-3655/2020
 ATTA1- C218T C241T C1812T C3037T G3052T C11152T C14408T A20268G C21844A G22225T A23403G T24076C C28854T G29140T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_516731
 2020-07-18 2020-08-21
 United States hCoV-19/USA/CA-CZB-3656/2020
 ATTA1- C241T C3037T C14408T G16639T A20268G C21844A A23403G T24076C C28854T G29140T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_516733
 2020-07-18 2020-08-21
 United States hCoV-19/USA/CA-CZB-3658/2020
 ATTAA1- C241T C3037T C7843T C14408T G16639T A20268G C21844A A23403G T24076C C28854T G29140T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_516928
 2020-07-18 2020-08-24
 Montenegro hCoV-19/Montenegro/ChVir-1800902002/2020
 ATTAAAGGTTTAT1- C241T C1722T C3037T G10265A C12664T C14408T G15372T C15720T A15972G C19718T A23403G C25889T T28759C GGG28881AAC C29550T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_516929
 2020-07-18 2020-08-24
 Montenegro hCoV-19/Montenegro/ChVir-1800932002/2020
 ATTAAAGGTTTATA1- C241T C1722T C3037T G10265A C12664T C14408T G15372T C15720T A15972G C19718T A23403G C25889T T28759C GGG28881AAC C29550T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_516930
 2020-07-18 2020-08-24
 Montenegro hCoV-19/Montenegro/ChVir-1800942002/2020
 ATTAAAGGTTTAT1- C241T G598T C3037T T3169C C6267T T9961C G10265A G10396T G12052T C14408T A15972G C16178T G19648T C19718T C20178T A23403G A25492G T28759C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_517831 MT966209
 2020-07-18 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0941/2020
 ATT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C21306T A23403G G25563T G26690T C28087T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_517832 MT966210
 2020-07-18 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0942/2020
 ATTA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C21306T A23403G G25563T G26690T C28087T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_517833 MT966212
 2020-07-18 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0943/2020
 ATT1- C241T C1059T C1385T G1738T C3037T G3242A T10104C C11916T C14408T C21306T A23403G G25563T C25584T G26690T C28087T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_517835 MT966216
 2020-07-18 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0945/2020
 AT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C21306T A23403G G25563T G26690T C28087T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_517836 MT966217
 2020-07-18 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0946/2020
 AT1- C241T C1059T C1385T G1738T C3037T G3242A C7165T C11916T C14408T C21306T A23403G G25563T G26690T C28087T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_517904 MT966211
 2020-07-18 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1014/2020
 ATTAAAGGTTTATAC1- C241T C1059T C1625T C3037T C10319T C14318T C14408T G16710T G20176T A23403G T24376C A25121T G25563T C26988T C27964T

EPI_ISL_517905 MT966213
 2020-07-18 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1015/2020
 ATTAAAGGTT1- C241T C1059T C1385T G1738T C3037T G3242A T10104C C11916T C14408T C21306T A23403G G25563T C25584T G26690T C28087T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_517906 MT966214
 2020-07-18 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1016/2020
 ATTAAAGGTT1- C241T C1059T C1385T G1738T C3037T G3242A C7165T C11916T C14408T C21306T A23403G G25563T G26690T C28087T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_517907 MT966218
 2020-07-18 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1017/2020
 AT1- C241T C1059T C3037T C5547T C10319T C11653T C14408T G16710T G20176T A23403G T24274C A25121T G25563T G28703T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_517908 MT966219
 2020-07-18 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1018/2020
 ATTAAAGGTTT1- C241T C1059T C3037T A6035G C14408T C18555T A23403G G25563T C28892T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518008
 2020-07-18 2020-08-25
 Singapore hCoV-19/Singapore/844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A A6397C A10982G G11083T C12400T C13730T C19524T T21775C C23929T G25907A C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518039
 2020-07-18 2020-08-25
 South Africa hCoV-19/South Africa/KRISP-K002451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C5974T C14408T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_518283 MT971926
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29751C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518500 MT971436
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518518 MT971454
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_518526 MT971462
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G21101A G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518530 MT971466
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T C22120T G22992A G23401A A23403G C23457A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518537 MT971473
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5736/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518538 MT971474
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C11902T C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518539 MT971475
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518595 MT971719
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C3411T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518606 MT971730
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C26305T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518649 MT971579
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7113T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518651 MT971581
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T TTA21991- C22480T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518653
 2020-07-18 2020-08-25
 Australia hCoV-19/Australia/VIC5860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G C26044T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518656 MT971585
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15251T G16647T C18555T C22498T G22992A G23401A A23403G C24381T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518720 MT971368
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518721 MT971369
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518814
 2020-07-18 2020-08-25
 Suriname hCoV-19/Suriname/SR-65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C9711T G14209T C14408T C15324T C16193T C18060T A22404T C22450T A23403G C28253T C28751A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518967 MT970474
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518968 MT970475
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519084 MT970879
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519085 MT970880
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519086 MT970881
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519155 MT970977
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4767/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519160 MT970988
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519163 MT970992
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4777/2020
 ATTAAAGGT1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519164 MT970993
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519165 MT970994
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4779/2020
 ATTAAAGGTTT1- G61T C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519166 MT970995
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4780/2020
 ATTA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519171 MT971007
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519174 MT971012
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519179 MT971020
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519184 MT971026
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519185 MT970866
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519201 MT970944
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519214 MT970972
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G526T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G G25599T GGG28881AAC C29272T C29546T

EPI_ISL_519233 MT971016
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T A18504G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519242 MT970855
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T T22897Y G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519243 MT970856
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519244 MT970857
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519245 MT970859
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519246 MT970860
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519247 MT970862
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519248 MT970865
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519249 MT970858
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519250 MT970861
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519251 MT970863
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4867/2020
 ATTAAAGGTTTA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C25207T GGG28881AAC

EPI_ISL_519252 MT970864
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519548 MT970541
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519549 MT970542
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519550 MT970543
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519551 MT970544
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T T7540C A13488G C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G C24897T GGG28881AAC

EPI_ISL_519552 MT970545
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519553 MT970546
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519554 MT970547
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4226/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G G28703C GGG28881AAC

EPI_ISL_519715 MT970721
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C25638T GGG28881AAC

EPI_ISL_519724 MT970732
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC

EPI_ISL_519726 MT970734
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC

EPI_ISL_519727 MT970735
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519730 MT970738
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519731 MT970739
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519802 MT971027
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519804 MT971029
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T T7540C G8368A C10604T C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC

EPI_ISL_519805 MT971030
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C27982A GGG28881AAC

EPI_ISL_519808 MT971033
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T G2635C C3037T T4402A T7540C C14408T G16647T C18555T C19151T G22992A G23401A A23403G G25348T GGG28881AAC

EPI_ISL_519810 MT971035
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519818 MT971043
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519819 MT971044
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519822 MT971047
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519823 MT971048
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_519829 MT971054
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519832 MT971057
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519839 MT971067
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519840 MT971068
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519846 MT971076
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519847 MT971077
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519849 MT971079
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A10055G C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519850 MT971080
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519851 MT971081
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C16394T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC

EPI_ISL_519853 MT971083
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519854 MT971084
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519855 MT971085
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29218T

EPI_ISL_519862 MT971092
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T C20320T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519869 MT971099
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29218T

EPI_ISL_519917 MT971146
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519918 MT971147
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519919 MT971148
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519921 MT971150
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519922 MT971151
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519923 MT971152
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29218T

EPI_ISL_519924 MT971153
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519926 MT971155
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519927 MT971156
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C11902T C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519928 MT971157
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G G28703C GGG28881AAC

EPI_ISL_519929 MT971158
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5126/2020
 ATTAAAGGTTT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C27532T GGG28881AAC

EPI_ISL_519930 MT971159
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519931 MT971160
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519932 MT971161
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519933 MT971162
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519934 MT971163
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519935 MT971164
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_519937 MT971166
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519941 MT971170
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519942 MT971171
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A18184T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519943 MT971172
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519944 MT971173
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519945 MT971174
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C19217T G21666T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519954 MT971189
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5189/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G28514T GGG28881AAC G29692T

EPI_ISL_519956
 2020-07-18 2020-08-25
 Australia hCoV-19/Australia/VIC5191/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G27762T GGG28881AAC

EPI_ISL_519957 MT971195
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5192/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519958 MT971198
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22498T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519967 MT971220
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5202/2020
 ATTAAAGGT1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T A19548G G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519968 MT971221
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519969 MT971222
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T G17370A C18555T G22992A G23401A A23403G C26801T GGG28881AAC

EPI_ISL_519970 MT971223
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5205/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519971 MT971224
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5206/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC G29579A

EPI_ISL_519972 MT971225
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C9803T C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519973 MT971226
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519974 MT971227
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519983 MT971257
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519987 MT971280
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519996 MT971324
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519997 MT971329
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C A14355G C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519998 MT971338
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5233/2020
 ATTAAAGG1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519999 MT971339
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520001 MT971346
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520002 MT971347
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC G29579A

EPI_ISL_520003 MT971353
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5238/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520004 MT971354
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24382T GGG28881AAC C29218T

EPI_ISL_520007 MT971370
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22498T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520016 MT971176
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520017 MT971177
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5252/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T G3114T T7540C C10277T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520018 MT971178
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_520020 MT971180
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_520026 MT971190
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520029 MT971194
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520030 MT971196
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520045 MT971228
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C2227T C3037T T4053C T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520054 MT971240
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520055 MT971241
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520063 MT971252
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520066 MT971258
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5303/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T C3811T T7540C C9967T C13458T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520067 MT971259
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C888T A1163T C3037T T7540C C14408T C14724T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC

EPI_ISL_520068 MT971260
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_520070 MT971264
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C9870T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520074 MT971268
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520079 MT971274
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5316/2020
 A1- C241T A1163T C3037T T7540C C14408T C16608T G16647T C18555T C22480T G22992A G23401A A23403G CCGATACAAGCCTCACTCCCTTTCGGATGGCTTATTGTT25498- GGG28881AAC

EPI_ISL_520080 MT971275
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G4583A T7540C C14408T G16647T C18555T G22992A T23017G G23401A A23403G C23895T GGG28881AAC

EPI_ISL_520090 MT971289
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520091 MT971290
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520092 MT971291
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A C23216T G23401A A23403G C25433T C27513T GGG28881AAC

EPI_ISL_520096 MT971296
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520100 MT971300
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5337/2020
 ATTAAAGGTTT1- C241T A1163T C3037T C7600T G7798T G11029T C14408T A23403G T23548C GGG28881AAC

EPI_ISL_520101 MT971301
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520102 MT971302
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G C26681T GGG28881AAC

EPI_ISL_520104 MT971304
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C28732T GGG28881AAC

EPI_ISL_520105 MT971305
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A8033C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520107 MT971307
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520121 MT971322
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520122 MT971323
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29218T

EPI_ISL_520123 MT971325
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520124 MT971326
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3429T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520125 MT971327
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520128 MT971331
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520129 MT971332
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5366/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520131 MT971334
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5368/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520132 MT971335
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520133 MT971336
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3429T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520134 MT971337
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T AAGTCATTT686- A1163T C2106T C3037T C7113T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520135 MT971340
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5372/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520139 MT971345
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T G5441A T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520144 MT971352
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520146 MT971357
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520148 MT971359
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520149 MT971360
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520150 MT971361
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520151 MT971362
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A11319G C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520152 MT971363
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2042G G2962T C3037T C5144T T7540C C13860T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520153 MT971364
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_520154 MT971366
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520155 MT971367
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520156 MT971371
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521328 MT973016
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T T2377C C3037T C5144T T7540C C14408T C14913T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521346 MT973031
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T G2174A AGT2866- C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521357 MT973042
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C27493T GGG28881AAC

EPI_ISL_521358 MT973043
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521359 MT973044
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521360 MT973045
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17012T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521361 MT973046
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521363 MT973048
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521365 MT973050
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521367 MT973052
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521368 MT973053
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6606/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521382 MT973068
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521384 MT973070
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC C29837T

EPI_ISL_521385 MT973071
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C27493T GGG28881AAC

EPI_ISL_521386 MT973072
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC C29837T

EPI_ISL_521387 MT973073
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC G29579A

EPI_ISL_521389 MT973075
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521398 MT973084
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521399 MT973085
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521402 MT973088
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G443A A1163T C3037T T7540C A7585C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521405 MT973091
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521407 MT973093
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G G28703C GGG28881AAC

EPI_ISL_521410 MT973096
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521411 MT973097
 2020-07-18 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G T26443C GGG28881AAC

EPI_ISL_522519
 2020-07-18 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2740/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C3037T C11916T C14408T C14805T C16650T A23403G G23804A G25563T G26144T G29179T G29779T GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_522521
 2020-07-18 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2742/2020
 ATTAAAGGTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_522522
 2020-07-18 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2743/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_522523
 2020-07-18 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2744/2020
 ATTAAAG1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T A27868G G29179T G29779T AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_522524
 2020-07-18 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2745/2020
 ATTAAAGGTTT1- C241T C1059T C3037T A3057G C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_522525
 2020-07-18 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2746/2020
 ATTAAA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAA29893-

EPI_ISL_522810
 2020-07-18 2020-08-26
 United States hCoV-19/USA/VA-DCLS-0799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T1918C C3037T C6402T C8320T G9190T A11782G C12171T C14408T C18877T C19102T G19872T G21893A A23403G C23664T G25563T C29530T A29865R C29870A

EPI_ISL_522811
 2020-07-18 2020-08-26
 United States hCoV-19/USA/VA-DCLS-0801/2020
 ATTAAAGGTTTA1- C241T T1918C C3037T C6402T C8320T G9190T A11782G C12171T C14408T C18877T C19102T G19872T G21893A A23403G C23664T G25563T C29530T C29870A

EPI_ISL_522812
 2020-07-18 2020-08-26
 United States hCoV-19/USA/VA-DCLS-0803/2020
 AT1- C241T T1918C C3037T C6402T C8320T G9190T A11782G C12171T C14408T C18877T C19102T G19872T G21893A A23403G C23664T G25563T C29530T C29870M

EPI_ISL_522813
 2020-07-18 2020-08-26
 United States hCoV-19/USA/VA-DCLS-0804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A38R C241T T1918C C3037T C6402T C8320T C12171T C14408T C18877T A23403G G25563T G28079T G29540A

EPI_ISL_522814
 2020-07-18 2020-08-26
 United States hCoV-19/USA/VA-DCLS-0805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38R C241T T1918C C3037T C3743T C6402T C8320T G9190T A11782G C12171T C14408T C17441T C18877T C19102T G19872T G21893A A23403G C23664T G25563T C29530T C29870A

EPI_ISL_522815
 2020-07-18 2020-08-26
 United States hCoV-19/USA/VA-DCLS-0807/2020
 ATTAAAGGTTT1- C241T T1918C C3037T C6402T C8320T G9190T A11782G C12171T C14408T C18877T C19102T G19872T G21893A A23403G C23664T G25563T T26502C C29530T C29870A

EPI_ISL_525193 MT940513
 2020-07-18 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1165/2020
 ATTAAAGGTTTATACC1- C241T G526T C1059T C3037T T6949C C11916T C14408T T17607C C18998T A20055G A23403G G25563T G25947C G29540A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_525194 MT940514
 2020-07-18 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T G526T C1059T C3037T T6949C C11916T C14408T T17607C C18998T A20055G A23403G G25563T G25947C G29540A C29870A

EPI_ISL_525195 MT940515
 2020-07-18 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1168/2020
 ATTAAAGGTTTA1- C241T C1059T T1907C C3037T C10015T C14408T G14829T C15654T A21875C C23191T A23403G G25563T G26769T C28057T C28253T C28831T C28854T

EPI_ISL_525196 MT940516
 2020-07-18 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1169/2020
 C241T C1059T T1907C C3037T C10015T C14408T G14829T C15368T C15654T C23191T A23403G G25563T G26769T C28057T C28253T C28854T A29871G AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_525197 MT940517
 2020-07-18 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1170/2020
 ATT1- C241T C1059T T1159A T1907C C3037T C10015T C14408T G14829T C15654T C23191T A23403G G25563T G26769T C28057T C28253T C28603T C28831T C28854T

EPI_ISL_525198 MT940518
 2020-07-18 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1171/2020
 AT1- C241T C1059T T1907C C3037T C10015T C14408T G14829T C15368T C15654T C23191T A23403G G25563T G26769T C28057T C28253T C28854T C29870A

EPI_ISL_525199 MT940519
 2020-07-18 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1172/2020
 ATTA1- C241T C1059T T1907C C3037T C10015T C14408T G14829T C15654T C23191T A23403G G25563T G26769T C28057T C28253T C28854T

EPI_ISL_525735
 2020-07-18 2020-09-01
 United States hCoV-19/USA/WA-S2745/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C2939T C3037T C3736T G7037A C7732T C14408T A23403G C25517T G25563T C26110T C28310T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525972
 2020-07-18 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8974T C14408T A20268G C20759T A23403G T24076C G24095T C28854T

EPI_ISL_525973
 2020-07-18 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G10345A C14408T C16260T T18435G A23403G G25563T C28821A G29227A

EPI_ISL_526318
 2020-07-18 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97CF90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T G26775T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526319
 2020-07-18 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97CFAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T A8040C C14408T A23403G C25096T G26775T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526391
 2020-07-18 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A976E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C1912T C3037T G4180T T10453Y G11083T C11195T C14408T A20711T A23403G A25003G GGG28881AAC C29870M

EPI_ISL_527649
 2020-07-18 2020-09-04
 United States hCoV-19/USA/AR-CDC-4307/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T C16375T G17110T G18538T GGGTGTTTA21985- A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_529963
 2020-07-18 2020-09-10
 Indonesia hCoV-19/Indonesia/JI-ITD-17398NT/2020
 ATTAAAGGTTTA1- C241T C3037T C7728T C14120T C14408T C17421T C18877T C21627T C21762T A23403G G25563T C26455T C26735T C28045T

EPI_ISL_532845
 2020-07-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7B2B32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T G2183A C3037T A9433T T9668C G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532879
 2020-07-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7D7FB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T C18687T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532899
 2020-07-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7EB7A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T AG3327GT A3569G C3695T A6211G A8659G C14408T G17964T C19488T G22346C A23403G G23868T C25867T C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532964
 2020-07-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-75939F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T T8524C G10097A T10992C C11001T G12191T C14408T C14688T A23403G C23731T A25201C C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532967
 2020-07-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-757908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A A10844G T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532978
 2020-07-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-759739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C5342T C7051T C7303T C8964T G11083T C14408T A23403G G25314T G28817A GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532983
 2020-07-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-759502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532985
 2020-07-18 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-7550AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532988
 2020-07-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-755533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T A7196G G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532990
 2020-07-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-75958A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532991
 2020-07-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-758BB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532992
 2020-07-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-759F40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532994
 2020-07-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-758FD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532996
 2020-07-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-757C78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A A10844G T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_533007
 2020-07-18 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-754F54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A C7573T G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535660 MW001885
 2020-07-18 2020-09-15
 United States SARS-CoV-2/human/USA/AR-CDC-7920/2020
 G199A C241T C1059T C2925T C3037T G11083T C14408T G15128T C16391Y G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_539810
 2020-07-18 2020-09-21
 China hCoV-19/Hong Kong/VM20059282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3638T T9007C T12313C A12820G C14408T C18981T C21597T A23403G G25166C G28209T GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541690
 2020-07-18 2020-09-23
 India hCoV-19/India/MH-NIV-122530/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C14408T C20384T C22323T A23403G G23868T G23900C GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541691
 2020-07-18 2020-09-23
 India hCoV-19/India/MH-NIV-123415/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T A3063G C5700A G6410A G11417T C14408T C20384T T20949C C21036T A23403G G28209C GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_547627
 2020-07-18 2020-09-24
 United States hCoV-19/USA/IA-GMF-11334/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A696C C3037T G3871T T3931C C6285T C14408T C19524T C20429T G22487S A23403G C28977T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549169
 2020-07-18 2020-09-28
 Norway hCoV-19/Norway/2900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10135C C11824T C13721T C14408T C20178T C20844T C22716T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556656
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94C333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6267T T9961C G10265A C14408T A15972G C16178T G19648T C19718T A23403G A25492G T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556660
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T T17610C A23403G GGG28881AAC C29802T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556701
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94C324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C5621T G9479T C14408T A20288C A23403G G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556706
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94AA9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2113T C3037T C3096T G5023T C5700A A11782G C14408T A16923G C22450T C22987T A23403G C25791T C26894T G28798T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556733
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94858C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T G29434T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556735
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94863E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T C10078T G10265A C14408T C16887T C17639T A19650G G21538A A23403G C25378T G25440T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556747
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94A748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556748
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B0A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T C9502T G10097A C14408T C21639T A23403G C23731T A28856G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556757
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9491C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T G29434T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556767
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556781
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949BC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536Y T2922C C3037T A4926C C5173Y C14408T C15049T G15602A G21624T A23403G GGG28881AAC G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556784
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/Wales/CAMC-94AFE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556785
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94A960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5173T A9433T C10078T G10265A C14408T C16887T A19650G G21538A A23403G C25378T G25440T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556821
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94857D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C28854T G29434T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556827
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941A1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556902
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9425CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C5621T G9479T C14408T A20288C A23403G G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556932
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C14408T T20653C C21637T A23403G G24368T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557173
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-87A300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222Y C241T C832T C2252A C3037T G11243T C14408T A14680G T18723C A20268G A23403G G25720T C27532T C28854T C29085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557184
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-84D755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4596T T11915G A11992T C12100A C14322T C14408T G23120T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557190
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-818E9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C4927Y C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557194
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-81EA81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557228
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-87C1C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2144T C3037T C5869T G9479T C9803T C14408T C16393T G16852T A23403G C26333T T27919C GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557231
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-87A4B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C832T C2252A C3037T G11243T C14408T A14680G T18723C A20268G A23403G G25720T C27532T C28854T C29085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557240
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-82788B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3403T A6308C C14408T T19839C TGG21294AAA A23403G G25793T C26681T C27741S GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557252
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-84AE35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557282
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-800BDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557315
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-82FE72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C2570T C3037T C14408T C14790T C21058T C22082T A23403G C25896T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557318
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-829D4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C841T C1714T C2048T C3037T T5092C C8092T A12507G A13516G C14408T G18816T G19999T A20268G C20451T A23403G A27675C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557328
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-84D1B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C2110T C3037T C14408T A23403G A28043T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557331
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-856197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1323A C1848T C3037T T11989C C14235T C14408T G18907A G20709T A23403G G28371T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557338
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-8262F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C6629T C9286T C14408T G16935T C19763T G21123T A23312G A23403G C25037T G28321T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557341
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-82B571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557372
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-85D321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C853T C3037T C5482T C12459Y C14408T G17944T G18186T C18747T A22182G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557413
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-866DAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C15720T A15972G C19718T A23403G G23405C G26700T T27384C T28759C GGG28881AAC G29527T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557450
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-86A725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G922T C3037T C12005T C14408T A21069G A23403G G28086T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557473
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-82A7A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C2110T C3037T C14408T A23403G A28043T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557486
 2020-07-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-867A10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T595G C1059T G1599T C3037T G12797A C14408T G21600T A23403G G25563T C26366T G28899T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562923
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC10467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C1912Y C3037T T7540C C14408T G16647T C18555T T22825Y G22992A G23401A A23403G G26526T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562927
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC10475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563312
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC11283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563313
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC11284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563315
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC11286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563316
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC11287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563317
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC11288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563319
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC11291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563320
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC11294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T G2305K C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_563321
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC11295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563482
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC11747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T A22055C G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563483
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC11749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T G3114T C6701T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563501
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC11976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G295R A1163T C3037T T7540C A10291R C14408T G16647T C18555T T22825C G22992A G23401A A23403G G26526T GGG28881AAC ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_563520
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC12086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_564330
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC7293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C203Y C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564331
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC7294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T C19151T G22992A G23401A A23403G C24130T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564358
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC7360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C16049T G16647T A17337G C18555T G22992A G23401A A23403G C25889T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564364
 2020-07-18 2020-09-30
 Australia hCoV-19/Australia/VIC7368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MT856453
 2020-07-18 2020-08-07
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_297/2020
 C241T A1163T C3037T T7207A T11343C C14408T C14649T A23403G G25116A GGG28881AAC G29557T G29736A

MT856454
 2020-07-18 2020-08-07
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_298/2020
 C241T A1163T C3037T C8692T G13379A C14262T C14408T C15738T C17999T A23403G GGG28881AAC

MT856455
 2020-07-18 2020-08-07
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_306/2020
 C241T T712A A1163T C3037T C5392T A11600G T12086C C14408T T16119C C19032T A23403G GGG28881AAC G29744T

MT919787
 2020-07-18 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-5976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11083T C13051T C14408T C21597T A23403G A27224C GGG28881AAC C29144T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MT919788
 2020-07-18 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-5983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T A3938C G7042T C7735T A9782G C14408T A23403G C28093T GGG28881AAC A29735G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MT919789
 2020-07-18 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-5984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A3938C G7042T C7735T A9782G C14408T A23403G C28093T GGG28881AAC A29735G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MT919790
 2020-07-18 2020-08-25
 Philippines SARS-CoV-2/human/PHL/COVID-6009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3736T T10771C C13051T C14408T C21597T A23403G C26305T GGG28881AAC C29144T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MT947565
 2020-07-18 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2745/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C2939T C3037T C3736T G7037A C7732T C14408T A23403G C25517T G25563T C26110T C28310T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT968055
 2020-07-18 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4307/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T C16375T G17110T G18538T GGGTGTTTA21985- A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_498268 MT876527
 2020-07-19 2020-07-27
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_265/2020
 C241T A1163T C3037T C7113T A12061G C14408T A23403G GGG28881AAC C29666T

EPI_ISL_498272 MT876554
 2020-07-19 2020-07-27
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_268/2020
 T205C C241T A1163T C3037T G11042T C14408T G15543T C17678T C21216T A23403G G25838T A27675C GGG28881AAC -29581T T29680-

EPI_ISL_498273 MT876556
 2020-07-19 2020-07-27
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_273/2020
 C241T C2110A A2805C C3037T T3163C C9532T C14408T A23403G C26058T A28304G GGG28881AAC C29296T

EPI_ISL_498274 MT876571
 2020-07-19 2020-07-27
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_274/2020
 C241T A1163T C3037T G10870T C14408T T20955C A23403G T23599G C28831T GGG28881AAC G29688T

EPI_ISL_498417 MT876572
 2020-07-19 2020-07-27
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_276/2020
 C241T G1148T A1163T C3037T C3961T G4024A C14408T A23403G GGG28881AAC

EPI_ISL_498418
 2020-07-19 2020-07-27
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_278/2020
 C241T C478T A1163T C3037T C8733T C14408T A23403G A25495T GTTAATCCAGTA26158- GGG28881AAC

EPI_ISL_498613
 2020-07-19 2020-07-27
 Singapore hCoV-19/Singapore/715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C2245T C6310A C6312A T8731C G11083T C13730T T17016C C19524T C20468T C23929T C25692Y C27982T C28311T AAAAAAAAAAAA29892-

EPI_ISL_498809 MT847218
 2020-07-19 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_269/2020
 C241T A1163T C3037T T3171C C4345A G11042T T13195C C14408T A23403G C23812T G23873T T25827C GGG28881AAC -29581T T29820-

EPI_ISL_498811 MT847219
 2020-07-19 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_275/2020
 C241T A1163T C2106T C3037T C8146T C14408T C17518T G21724T A23403G G28001T GGG28881AAC

EPI_ISL_498830 MT847225
 2020-07-19 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_311/2020
 C106T C241T A1163T C3037T G3072A C6543T T9022C G14181C C14408T C17410T C19560T C21691T A23403G G23545A T24406C C27741T GGG28881AAC G29674T

EPI_ISL_509804 MT846665
 2020-07-19 2020-08-05
 United States SARS-CoV-2/human/USA/IL-UW-979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2698C C3037T C14408T C17976T G19480T A20288G C21721T A23403G C26894T C27804T C28638A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509813 MT846690
 2020-07-19 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-1004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509981 MT846671
 2020-07-19 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C G1874A C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509988 MT846679
 2020-07-19 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510787 LR882268
 2020-07-19 2020-08-07
 Switzerland 210050
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T T3034Y C3037K G3059K T3095C G10265A C12880T C14408T A15972G C19718T A23403G C23896T C25831T G28077T C28603T T28759Y GGG28881AAC G29692K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_511990 LR882219
 2020-07-19 2020-08-10
 Switzerland 210053
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G3340T C14408T T18471C C18526T A23403G C25498T C25916Y C28139T C28833T GGG28881AAC G29090K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512511
 2020-07-19 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1697A5/2020
 ATTAAAGGTTTATACC1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC AAA29901-

EPI_ISL_512522
 2020-07-19 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169857/2020
 ATTAAAGGTTTATACC1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_512527
 2020-07-19 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1698A2/2020
 ATTAAAGGTTTA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_512531
 2020-07-19 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1698EE/2020
 ATTAAAGGTTTATAC1- C241T C3037T T3049C C14408T T15555Y G21624T A23403G G27877T A28523G GGG28881AAC A29903-

EPI_ISL_514268
 2020-07-19 2020-08-16
 Israel hCoV-19/Israel/CVL-n25794/2020
 ATTAA1- C241T C683T C1059T C3037T C3041T G5018A C6402T T7759G T10249C C10833T G11083T C14408T G17427T A23403G G25563T C28854T

EPI_ISL_514275
 2020-07-19 2020-08-16
 Israel hCoV-19/Israel/CVL-n25904/2020
 ATTAAAG1- C241T C313T C1758T C3037T G4510A C14408T G15438T A20297G A23403G G25785T GGG28881AAC G29260T

EPI_ISL_515075
 2020-07-19 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T G18412T T20273C A23403G G25340T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515642
 2020-07-19 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002257/2020
 ATTAAAGGT1- C241T C2135A C3037T T12503C C13051T C14408T A17961T C21575T A23403G C27741T GGG28881AAC C29721T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515647
 2020-07-19 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002264/2020
 AT1- C241T C3037T C6762T T12503C C14408T A23403G G25555T G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515653
 2020-07-19 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002271/2020
 C241T C3037T T12503C C14408T A23403G GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515656
 2020-07-19 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T12503C C14408T A23403G GGG28881AAC C29721T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515665
 2020-07-19 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002287/2020
 ATTA1- C241T C3037T C6762T A9439G T12503C C14408T A23403G G25770T G26230T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515816
 2020-07-19 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001331/2020
 C241T A1547G C2676T C3037T T12503C C14408T A23403G GGG28881AAC G29511T C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515817
 2020-07-19 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001332/2020
 ATTAAAGG1- C241T C2570T C3037T T7012A C14408T C15540T C19402T A23403G G28326T C28849T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515818
 2020-07-19 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001333/2020
 C241T C1426T C3037T T12503C C14408T A21466G A23403G GGG28881AAC A29221G C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515819
 2020-07-19 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T G5572T T12503C C14408T C16490T A19674G A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515820
 2020-07-19 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001335/2020
 AT1- C241T A1801G C3037T C6762T T12503C C14408T G19009T C19263T A23403G G25770T GGG28881AAC G29392T C29721T C29784T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515821
 2020-07-19 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001336/2020
 AT1- C241T C3037T T7012A C14408T C19402T A23403G G28326T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_515822
 2020-07-19 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C6762T G11083T T12503C C14408T A23403G G25455T G25770T GGG28881AAC C29721T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515865
 2020-07-19 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001380/2020
 C241T A1992G C2102T C3037T C11379T T12503C C14408T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515866
 2020-07-19 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C4002T G4936A G10097A C12623T C13536T C14408T C17444T C18747T G19072T A23403G C23731T G27556T G28373T C28606T GGG28881AAC C29281T G29425T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_516433 MT928961
 2020-07-19 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516931
 2020-07-19 2020-08-24
 Montenegro hCoV-19/Montenegro/ChVir-1804702002/2020
 ATTAAAGGTTTA1- C241T C3037T C4002T G5657A G5950T G10097A C13536T C14408T G19732T G20931T A23403G C23731T C25708T GGG28881AAC G29425A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516932
 2020-07-19 2020-08-24
 Montenegro hCoV-19/Montenegro/ChVir-1807082002/2020
 ATTAAAGGTTT1- C241T C3037T C4002T G5206T G5950T G10097A C13536T C14408T G19732T G20931T A23403G C23731T A25397C C25708T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_516933
 2020-07-19 2020-08-24
 Montenegro hCoV-19/Montenegro/ChVir-1807132002/2020
 ATTAAAGGTTT1- C241T C3037T C4002T G5950T G10097A C13536T C14408T G19732T G20931T A23403G C23731T C25708T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_518006
 2020-07-19 2020-08-25
 Singapore hCoV-19/Singapore/842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G5690A C6310A C6312A G11083T C12400T C13730T C19524T T21775C C23929T G25907A C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518007
 2020-07-19 2020-08-25
 Singapore hCoV-19/Singapore/843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A A6397C A10982G G11083T C12400T C13730T C19524T T21775C C23929T G25907A C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518009
 2020-07-19 2020-08-25
 Singapore hCoV-19/Singapore/845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C615A G3250T C6310A C6312A C6968T G11083T C13730T C14177T A16441C C19524T C23185T C23929T C27925T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518115 MT973166
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G558T A1163T C3037T G3564T T7540C G14277T C14408T G16647T C18555T G22992A G23401A A23403G G24933T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518246 MT973061
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518345 MT971531
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518360 MT971546
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518370 MT971556
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518405 MT971589
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518406 MT971590
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T C22450A G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518407 MT971591
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_518410 MT971594
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518411 MT971595
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518416 MT971600
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5600/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518474 MT971410
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1480T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518475 MT971411
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518477 MT971413
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518479 MT971415
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_518501 MT971437
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C8078T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518502 MT971438
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518503 MT971439
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518504 MT971440
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G T25293C C25889T C28776T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518510 MT971446
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518511 MT971447
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518522 MT971458
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A C27920T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518527 MT971463
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A C27920T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518531 MT971467
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518541 MT971477
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25690T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518542 MT971478
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C TAC11974- C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518579 MT971703
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518581 MT971705
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29218T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518582 MT971706
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T C6633T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518602 MT971726
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G18859T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518603 MT971727
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518605 MT971729
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518629 MT971753
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5835/2020
 ATTAAAGGTTT1- C241T A1163T C3037T C3411T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518634 MT971758
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C14616T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518635 MT971759
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5841/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T C14616T G16647T C18555T G22992A G23401A A23403G C26456T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518640 MT971764
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518646 MT971576
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22498T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518647 MT971577
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518654 MT971583
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G28917A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518655 MT971584
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518708 MT971666
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5929/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T C14576T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518713 MT971671
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518715 MT971673
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518817
 2020-07-19 2020-08-25
 Suriname hCoV-19/Suriname/SR-68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1843T C3037T C14408T C15324T C16193T C18060T A22404T C22450T A23403G C23929T C28253T C28751A AGT29746- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_518923 MT970729
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4512/2020
 ATTA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C T28862C GGG28881AAC

EPI_ISL_519055 MT970829
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519066 MT970843
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C8139T C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519157 MT970981
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23758T GGG28881AAC

EPI_ISL_519170 MT971004
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4784/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G18859T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519181 MT971022
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519182 MT971023
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4796/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519183 MT971025
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4797/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T C3045T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519217 MT970980
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519232 MT971014
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C203T C241T A1163T C3037T C4668T T4849C T7540C C14408T C15615T G16647T C18555T G22992A G23401A A23403G C28253T GGG28881AAC

EPI_ISL_519235 MT971024
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A4681G T7540C C14408T G15594T G16647T C18555T C20480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519236 MT970830
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_519518 MT970519
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4169/2020
 AT28881-G C241T A1163T C3037T T7540C A7929C C14408T G16647T C18555T C19263T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519659 MT970518
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519820 MT971045
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC

EPI_ISL_519860 MT971090
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T5941A C7162T T7540C C14408T G15594T G16647T C18555T G22992A C23043T G23401A A23403G GGG28881AAC

EPI_ISL_519861 MT971091
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519866 MT971096
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519867 MT971097
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519868 MT971098
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC

EPI_ISL_519874 MT971104
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519875 MT971105
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29218T

EPI_ISL_519894 MT971123
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519895 MT971124
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_519896 MT971125
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519897 MT971126
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5094/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519898 MT971127
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2410G C3037T A4518G T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519899 MT971128
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519900 MT971129
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5097/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T G17370A C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519901 MT971130
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519902 MT971131
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519903 MT971132
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519904 MT971133
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_519905 MT971134
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G18859T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519906 MT971135
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T A1163T C3037T C3784T G6922A T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519907 MT971136
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C A14355G C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A G27666A GGG28881AAC

EPI_ISL_519909 MT971138
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519910 MT971139
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519911 MT971140
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_519913 MT971142
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519915 MT971144
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519920 MT971149
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519936 MT971165
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC

EPI_ISL_519938 MT971167
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519939 MT971168
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T T18260G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519940 MT971169
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519946 MT971175
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519952 MT971185
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5187/2020
 ATTAAAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519955 MT971192
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5190/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519975 MT971229
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5210/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC G29579A

EPI_ISL_519977 MT971239
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C28657T GGG28881AAC

EPI_ISL_520009 MT971382
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5244/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520010 MT971384
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520019 MT971179
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520021 MT971181
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520023 MT971184
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5258/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520024 MT971186
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C14616T G16647T C18555T C21219T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520025 MT971188
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520027 MT971191
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520081 MT971276
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G4583A T7540C C14408T G16647T C18555T G22992A T23017G G23401A A23403G C23895T GGG28881AAC

EPI_ISL_520082 MT971277
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520083 MT971278
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520097 MT971297
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520106 MT971306
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_520118 MT971375
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520126 MT971328
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520127 MT971330
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G11083T G14244T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520130 MT971333
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29218T

EPI_ISL_520157 MT971376
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_520158 MT971377
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1480T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_520159 MT971378
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1480T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC G29477T

EPI_ISL_520161 MT971380
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520162 MT971381
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520163 MT971383
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5400/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520164 MT971385
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520166 MT971387
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T A20662G G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_520167 MT971388
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520168 MT971389
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G28514T GGG28881AAC G29692T

EPI_ISL_521369 MT973054
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15727A G16647T C18555T G21606T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521371 MT973056
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC

EPI_ISL_521372 MT973057
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G G25593T C25638T GGG28881AAC

EPI_ISL_521376 MT973062
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521377 MT973063
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC C29200T

EPI_ISL_521379 MT973065
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6617/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T G17370A C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521380 MT973066
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521381 MT973067
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521383 MT973069
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521388 MT973074
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC

EPI_ISL_521394 MT973080
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521395 MT973081
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521396 MT973082
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17678T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521397 MT973083
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_521400 MT973086
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6643/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521403 MT973089
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521404 MT973090
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521412 MT973098
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A18550G C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521415 MT973100
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521418 MT973103
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521419 MT973104
 2020-07-19 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_522526
 2020-07-19 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2747/2020
 ATTAAAGGTTTAT1- C241T C1059T C3037T A3057G C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_522528
 2020-07-19 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2749/2020
 C241T T586C C1059T C3037T C11916T C14408T C16650T A20675T A21782G A23403G G25563T G29179T G29779T

EPI_ISL_522529
 2020-07-19 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2750/2020
 ATTAAAGGTTTATACCTT1- C241T T586C C1059T C3037T C4795T C11916T C14408T C16650T A20675T A21782G A23403G G25563T G29179T G29779T

EPI_ISL_522530
 2020-07-19 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2751/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_522534
 2020-07-19 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T T586C C1059T C3037T T7225C C11916T C14408T C16650T A20675T A21782G A23403G G25563T G29179T G29779T

EPI_ISL_522705 MT973342
 2020-07-19 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A39M C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C26028T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_525736
 2020-07-19 2020-09-01
 United States hCoV-19/USA/WA-S2746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C2939T C3037T C3736T G7037A C7732T C14408T A23403G C25517T G25563T C26110T C28310T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_525737
 2020-07-19 2020-09-01
 United States hCoV-19/USA/WA-S2747/2020
 ATTAAAGGTTTAT1- C241T C1059T T1927C C3037T C10319T C14408T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525975
 2020-07-19 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1514T C3037T C3447T A7068G C8078T G11837T C14408T A23403G G25563T A28870T

EPI_ISL_529237
 2020-07-19 2020-09-10
 United Kingdom hCoV-19/England/BIRM-623D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1185T C1450T T2124C C3037T C4002T C8655T G10097A C13536T C13743T C14408T C15738T G23236T A23403G C23731T G25720T G26065T GGG28881AAC -29682TAATC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532652
 2020-07-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89A847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T A3413R G3483T G10097A A10844G T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532659
 2020-07-19 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-89D1C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532689
 2020-07-19 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-89BBD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532745
 2020-07-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-883C81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15951Y A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532836
 2020-07-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7EDA7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C10078T C14408T A23403G C24833T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532840
 2020-07-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7F31BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9165T C9700T G11083T C11747T C13378T C14408T T16452C A23403G A25175C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532867
 2020-07-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7ED846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T A3450G G11083K G12728A C13862T C14408T G18803T A23403G C27807T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532894
 2020-07-19 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-7B19B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532908
 2020-07-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7D9C41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4297G A4762G A5040G C14408T T19557C C21638T C22120T A23403G C23638T GGG28881AAC C29028T C29358Y G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532955
 2020-07-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7E54E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532959
 2020-07-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7C9C08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532980
 2020-07-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7532A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C11479T C14408T G15602A G21624T A23403G A23639G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539811
 2020-07-19 2020-09-21
 China hCoV-19/Hong Kong/VM20060398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C2836T C3037T C7869T C9344T A10799G C14408T C17639T C18877T C22444T C23277T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539812
 2020-07-19 2020-09-21
 China hCoV-19/Hong Kong/VM20060346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8299T C9207T G11335T C14396T C14408T C15951T C16616A T18402C C18877T A23403G A23592G G25563T G25757T G28378T T29461C G29702T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547628
 2020-07-19 2020-09-24
 United States hCoV-19/USA/WI-GMF-11415/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T T1592C C2416T C3037T C6113T C14408T T16530A G21372T A23403G G25563T C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547630
 2020-07-19 2020-09-24
 United States hCoV-19/USA/WI-GMF-11475/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C715T C1059T G1957T C3037T C11916T C14408T G22186T A23403G A23586G G25563T G26918T ATCG29752GAGK AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_552664
 2020-07-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-975BB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4596T T11915G A11992T C12100A C14322T C14408T G21073A G23120T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556730
 2020-07-19 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9496F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C14408T T20653C C21637T A23403G G24368T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556734
 2020-07-19 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94A739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447T C3037T C4002T C6843T G10097A C13378T C13536T C14408T C18115T G22199T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556750
 2020-07-19 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949C68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C4002T G10097A C10449T C13536T C14408T C19170T A23403G C23731T C24133T C24912T G25440T C27970T C28674T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556840
 2020-07-19 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9418F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C10078T C14408T A23403G C23635T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556939
 2020-07-19 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4456T C14408T C16394T C19170T G19509A A21509G A23403G G25906T GGG28881AAC T29568C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557216
 2020-07-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-87A35B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7258C T8941C G12911A C12919T C14408T G15438T A20268G A23403G C29485T G29715T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557241
 2020-07-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-87B6F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G5206T C7926T G10097A C10507T C10702T C10834T C13536T C14408T A23403G C23731T TTA26159- GGG28881AAC C29274T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557277
 2020-07-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-87BC04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1758T C3037T G4510A C14408T G15438T A23403G G25785T GGG28881AAC G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557377
 2020-07-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-876BA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T G12067T C14408T A15984T C18959T C20946T C22075T A23403G C27945T G28086T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557451
 2020-07-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-854F26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427T C2113T C3037T A5317G C14408T A16474G G20996T T21797C A23403G G25912T GGG28881AAC C29045T C29269A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557470
 2020-07-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-874E6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3403T A6308C C14408T T19839C TGG21294AAA A23403G G25793T C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560645
 2020-07-19 2020-09-29
 France hCoV-19/France/IdF8844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C8964T G9653T C12020T C14408T T16836C A23403G C28744T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560646
 2020-07-19 2020-09-29
 France hCoV-19/France/IdF8845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C8964T G9653T C12020T C14408T T16836C A23403G C28744T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564206
 2020-07-19 2020-09-30
 Australia hCoV-19/Australia/VIC7044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MT800014
 2020-07-19 2020-07-27
 Egypt SARS-CoV-2/human/EGY/CUNCI- HGC7I01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T A4870C C13326T C14408T G16206T C16568T C18877T A23403G C23997T G25563T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

MT800016
 2020-07-19 2020-07-27
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC7I02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- T8740C C8782T G17014T G18106T G21770T G22468T C25904T C27294T T28144C G28878A G29742A TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

MT800023
 2020-07-19 2020-07-27
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC7I07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C13792T C14408T C15866S C21707T T21973C A23403G G25563T C28849T G29402T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

MT800035
 2020-07-19 2020-07-27
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC7I029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

MT800037
 2020-07-19 2020-07-27
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC7I030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

MT814636
 2020-07-19 2020-07-29
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC7I028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

MT814698
 2020-07-19 2020-07-29
 Egypt SARS-CoV-2/human/EGY/CUNCI-HGC7I026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

MT947564
 2020-07-19 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2747/2020
 ATTAAAGGTTTAT1- C241T C1059T T1927C C3037T C10319T C14408T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT947577
 2020-07-19 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C2939T C3037T C3736T G7037A C7732T C14408T A23403G C25517T G25563T C26110T C28310T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

MW012270
 2020-07-19 2020-09-17
 Serbia SARS-CoV-2/human/SRB/NP33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T C3267A T3610C G10265A C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_492184
 2020-07-20 2020-07-20
 Italy hCoV-19/Italy/Pascale/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T T9157C C14408T A23403G AGGA29860CTTG A29865T G29868A A29889G A29897G

EPI_ISL_498615
 2020-07-20 2020-07-27
 Singapore hCoV-19/Singapore/717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G1821T C6310A C6312A G7560A A9419G G11083T C13730T G16089A A16464G C19524T T19530G G21974C C23929T C27323T C28311T AAAAAAAAAAAA29892-

EPI_ISL_498892 MT847226
 2020-07-20 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_312/2020
 C241T A1163T C3037T C4672T C11455T C14408T G17964T G21761T A23403G C27925T G28690T GGG28881AAC G29254A G29402T

EPI_ISL_501894
 2020-07-20 2020-07-31
 Latvia hCoV-19/Latvia/081/2020
 C241T G942A G1820A C3037T C3373A C6402T C14408T C19017T G21724A A23403G G28233T TGT28238ATC G28242C T28245G GGG28881AAC

EPI_ISL_509430 MT827075
 2020-07-20 2020-08-03
 Brazil SARS-CoV-2/human/BRA/RJ-DCV05/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T A23403G AA29902-

EPI_ISL_509431 MT827190
 2020-07-20 2020-08-03
 Brazil SARS-CoV-2/human/BRA/RJ-DCV1/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_509432 MT827872
 2020-07-20 2020-08-03
 Brazil SARS-CoV-2/human/BRA/RJ-DCV3/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_509433 MT827940
 2020-07-20 2020-08-03
 Brazil SARS-CoV-2/human/BRA/RJ-DCV5/2020
 ATTAAAG1- C241T C3037T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_509435 MT827074
 2020-07-20 2020-08-03
 Brazil SARS-CoV-2/human/BRA/RJ-DCVTV507Q/2020
 ATTAAAGGT1- C241T C3037T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_509806 MT846682
 2020-07-20 2020-08-05
 United States SARS-CoV-2/human/USA/IL-UW-996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1288T G1298A C1437T C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T G29745A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509974 MT846663
 2020-07-20 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T G2035T C3037T G7743T C11956T C12025T C14408T C14925T T19839C T20058C T22129G A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509983 MT846674
 2020-07-20 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C T2152C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510536 MT835383
 2020-07-20 2020-08-04
 Brazil SARS-CoV-2/human/BRA/RJ-DCVN5/2020
 TAAAG3- C241T C3037T C14408T A23403G T26258C GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_510539
 2020-07-20 2020-08-07
 China hCoV-19/Hong Kong/HKU-200723-108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T C21597T A23403G G25407T C25658T GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510541 MT844030
 2020-07-20 2020-08-04
 Brazil SARS-CoV-2/human/BRA/RJ-DCVN4/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T A23403G T26258C GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_510758 LR882221
 2020-07-20 2020-08-07
 Switzerland 210011
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T C3037T C4002T G10097R C13536T C14408T G19732T T21075W A23403G C23731T GGG28881AAC C29739T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510759 LR882225
 2020-07-20 2020-08-07
 Switzerland 210012
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T T6904Y T6910Y G9130T C14408T C16111T G23401T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510760 LR882223
 2020-07-20 2020-08-07
 Switzerland 210013
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C274T C313T C3037T A3632R T3667Y T3726K A5533W C7267Y T8082C C9286T C14408T T17675Y C19763T T20282Y A20446R A23403G C28732T GGG28881AAC G29260T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510761
 2020-07-20 2020-08-07
 Switzerland hCoV-19/Switzerland/210014_630_H03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T T2996Y C3037T A3048M G5515K C7735Y C10605T C14408T A16210W G16245R C16946T C17288T T17675Y A23403G G23426K C26801Y T27285C G28248T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510762 LR882218
 2020-07-20 2020-08-07
 Switzerland 210015
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C635Y T2116G C2910Y C3037T A3094R T6958Y C8917T G9389A C14408T G21898T A23403G C24023T C26681T G28300C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510794 LR882284
 2020-07-20 2020-08-07
 Switzerland 210061
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G6981K C14408T C19488T A23403G G26172T C28500T GGG28881AAC G29254A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510795 LR882282
 2020-07-20 2020-08-07
 Switzerland 210062
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T6971W C7011Y G9130T C14408T G19075R A23403G C25572T T27319C G28487A C28868T GGG28881AAC G29628T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_511985 LR882205
 2020-07-20 2020-08-10
 Switzerland 210010
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G521T TT693YD C3037T C4810T T6909A C7521T C14408T T19980Y T19988Y C20044Y T20084W G20134T C20233T C22210T A23403G C27131T G28056A G28580T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512481
 2020-07-20 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1695BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1960T C3037T T8761A G10097A G13993T C14408T G17122T G18960T A23403G G24757T C27725Y GGG28881AAC AAA29901-

EPI_ISL_512488
 2020-07-20 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169620/2020
 ATTAAAGGTT1- C241T C3037T T3049C C14408T T15555C G21624T A23403G G27877T A28523G GGG28881AAC

EPI_ISL_512489
 2020-07-20 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16963F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512496
 2020-07-20 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1696A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512503
 2020-07-20 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16971E/2020
 ATTAAAGGTTTA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G C27590Y G27877T A28523G GGG28881AAC

EPI_ISL_512504
 2020-07-20 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16972D/2020
 ATTAAAGGT1- C241T C3037T T3049C C4927Y C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512506
 2020-07-20 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16974B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T TCATGG505- C3037T T3049C C14408T T15555C G21624T A23403G G27877T A28523G GGG28881AAC

EPI_ISL_512515
 2020-07-20 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1697E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_514269
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n25863/2020
 C241T C1059T C3037T G7295T G11083T C12784T C14408T C16457T T22150C A23403G G23678T C25000T G25523T G25563T C27297T G28001T G28346T G28917T

EPI_ISL_514270
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n25867/2020
 AT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T G23311T A23403G G23868T T24805C G25563T C26270T G26713T C28256A G29540A A29805G

EPI_ISL_514272
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n25872/2020
 A30C C241T C683T C1059T C3037T G4925T C6402T T10249C C10833T G11083T C14408T G17427T A20453T A22474T G22520A A23403G G23501T G25563T T26966C G27271A C27903T T28088A C28854T

EPI_ISL_514274
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n25886/2020
 ATT1- C241T C683T C1059T C3037T C6402T T10249C C10833T G11083T C14408T G17427T G21724C A23403G G25563T T27929A C28854T

EPI_ISL_514279
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n25924/2020
 C241T C313T C3037T G4211A G4510A C14408T G15438T A23403G G25785T G28086A T28088A GGG28881AAC G29260T C29784T G29800C

EPI_ISL_514280
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n25929/2020
 C241T C683T C1059T C3037T C6402T T10249C G11083T C13115T C14408T G17427T G21193T A23403G G25440T G25563T G28086A T28088A C28320T C28854T G29315C

EPI_ISL_514283
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n26099/2020
 G105T C241T C1059T C3037T A6970T T8963C T10288C C11916T C13821T C14408T C18998T A23403G G25563T G26217T C26625T A28920G G29540A A29752T

EPI_ISL_514284
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n26111/2020
 ATTA1- C241T G526T C1059T C3037T T10288C C11916T C13821T A13872C C14408T C18998T G19300C A23403G G25563T G26217T C26625T C28054T G28086A T28088A G29540A A29752T

EPI_ISL_514286
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n26113/2020
 G105T C241T C1059T C3037T T10288C C11916T C13821T C14408T C17304T C18998T A23403G G25563T G25593C G26217T C26625T G29540A A29752T

EPI_ISL_514287
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n26122/2020
 C241T C313T C3037T G4510A C14408T G14575T G15438T A20431G A23403G G25785T GGG28881AAC G29179T G29260T

EPI_ISL_514288
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n26131/2020
 ATT1- C66A C241T G625T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A21141G A23403G T24805C G25563T C26270T C28256A G29540A A29805G A29818T

EPI_ISL_514289
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n26134/2020
 ATT1- C241T C313T C1758T C3037T G3663T G4510A G11828A C14408T G15438T A23403G G25552T G25785T GGG28881AAC G29260T

EPI_ISL_514292
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n26156/2020
 ATTA1- C241T C683T C1059T G2235A C3037T C3041T C6402T T7759G T10249C C10833T G11083T C14408T G17427T A23403G G25563T C28854T

EPI_ISL_514293
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n26166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C313T C1059T C1758T C3037T G4510A C12119T C14408T C14478T G15438T A19298G C19862T A23403G C23987T G25785T G28086A T28088A GGG28881AAC G29260T G29781T

EPI_ISL_514294
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n26167/2020
 ATT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T G29540A A29805G

EPI_ISL_514295
 2020-07-20 2020-08-16
 Israel hCoV-19/Israel/CVL-n26168/2020
 ATTAA1- C241T C683T C1059T C3037T C3041T TTACTT5904- C6402T T7759G C9319T T10249C C10833T G11083T C11824T C14408T C14790T G17427T A23403G G25563T C28854T

EPI_ISL_514615
 2020-07-20 2020-08-17
 Bangladesh hCoV-19/Bangladesh/NGRI_NSTU_21/2020
 ATTAA1- A6G C241T T2083C C2091T C3037T A3647G C5544T G5857A C14408T C18877T C22444T A23403G G23587T G25494T G25563T C26735T C28854T A29891G AAAA29900-

EPI_ISL_515057
 2020-07-20 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T T19839C C20543T C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515069
 2020-07-20 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T C18647T T19839C C21595T C21646T A23403G T25711C C26846T T28009C G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515070
 2020-07-20 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T C14408T A15984T C20946T C22075T A23403G C27945T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515076
 2020-07-20 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T G18412T T20273C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515077
 2020-07-20 2020-08-18
 Belgium hCoV-19/Belgium/ULG-10270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4052A C10029T C10449T C14408T G18040T C19718T T19839C C21646T A23403G C26846T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515631
 2020-07-20 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002239/2020
 ATTA1- C241T C3037T C6762T A9439G T12503C C14408T A23403G G25770T G28580A GGG28881AAC C29721T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_515650
 2020-07-20 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002268/2020
 ATTAAAGGTT1- C241T C3037T C4002T G10097A C13536T C14408T C18747T C20380T A23403G C23731T GGG28881AAC G29425T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515740
 2020-07-20 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002372/2020
 ATT1- C241T A1832G C3037T G11447A C14408T C21306T C22675T A23403G G28077T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515744
 2020-07-20 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002378/2020
 ATTAAAG1- C241T C1469T C3037T C14408T G15594T T17351C A20268G G22132A A23403G G27659T G29751C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515749
 2020-07-20 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002383/2020
 AT1- C241T C3037T A11595G T12503C C14408T G18186T C21846T A23403G GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515874
 2020-07-20 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K001390/2020
 ATTAAAGGTT1- G174T C241T C1263T C3037T C9857T C14408T C15390T G21850T A23403G A23920G G25909T G27561T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_516431
 2020-07-20 2020-08-20
 North Macedonia hCoV-19/North Macedonia/7808/2020
 ATTA1- C241T C3037T G4255A G10265A C11530T C14408T A15972G C19718T C20270T A23403G A25859G G28300C T28759C GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_516434 MT928962
 2020-07-20 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516435 MT928963
 2020-07-20 2020-08-21
 United States SARS-CoV-2/human/USA/IL-UW-1009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T G2035T C2662T C3037T G7743T C11956T C12025T C14408T C14925T T19839C T20058C T22129G A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518081 MT973134
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518082 MT973135
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518083 MT973136
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T490C A1163T C3037T C7600T G7798T C11931A C14408T A23403G T23548C GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518084 MT973137
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C19217T G21666T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518086 MT973139
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G C26907T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518088 MT973142
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518090 MT973144
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518091 MT973147
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518092 MT973148
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A6233G T7540C C14408T G16647T C18555T G21101A G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518099 MT973150
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_518100 MT973151
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518101 MT973152
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518108 MT973159
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T G2036T C3037T G3564T C7162T T7540C G11535T C14408T G16647T C18555T C20457T G22992A G23401A A23403G G24933T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518239 MT973283
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518240 MT973284
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518247 MT973141
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T3873C T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518248 MT973145
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6256/2020
 ATTAAAG1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518249 MT973146
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518282 MT971925
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T G17370A C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518322 MT971950
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518361 MT971547
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G526T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G G25599T GGG28881AAC C29272T C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518363 MT971549
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_518367 MT971553
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26078T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518368 MT971554
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518372 MT971558
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518374 MT971560
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T A14412G G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518375 MT971561
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T T18509G C18555T C18568T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518380 MT971566
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T18672C G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518415 MT971599
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518422 MT971627
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518491 MT971427
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23758T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518492 MT971428
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518493 MT971429
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G6922A T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518494 MT971430
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518497 MT971433
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518498 MT971434
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518499 MT971435
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518505 MT971441
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C11001T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518517 MT971453
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T4402A T7540C C14408T C15738T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518523 MT971459
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C25889T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518525 MT971461
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518533 MT971469
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518536 MT971472
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518540 MT971476
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518546 MT971482
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518551 MT971487
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C T10210C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518565 MT971689
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518567 MT971691
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518576 MT971700
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518577 MT971701
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5779/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G21666T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518578 MT971702
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22987T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518580 MT971704
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518588 MT971711
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5792/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518589 MT971713
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T10717C C14408T G15906T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518590 MT971714
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_518592 MT971716
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518594 MT971718
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518596 MT971720
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5801/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518597 MT971721
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5802/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518600 MT971724
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518601 MT971725
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518604 MT971728
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC C29200T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518607 MT971731
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518609 MT971733
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A T23272C G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518610 MT971734
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21575T G22992A G23401A A23403G C27925A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518611 MT971735
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518613 MT971737
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G23900C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518614 MT971738
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4999T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518619 MT971743
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22987T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518626 MT971750
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518627 MT971751
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518628 MT971752
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_518630 MT971754
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518631 MT971755
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5837/2020
 AT1- T13C C241T T490C A1163T C3037T C7600T G7798T C11931A C14408T A23403G T23548C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518637 MT971761
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C27323T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518641 MT971765
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T490C A1163T C3037T C7600T G7798T C11931A C14408T A23403G T23548C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518652 MT971582
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518657 MT971610
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4672T T7540C C14408T G16647T C18555T C20178T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518662 MT971615
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6781T T7540C G11083T C14408T C16575T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518664 MT971616
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518666 MT971618
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518667 MT971619
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518676 MT971634
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518680 MT971638
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25521T C28253T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518687 MT971645
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518688 MT971646
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5909/2020
 ATTAAAGGTTTATACCTTCCC1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518689 MT971647
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G28917A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518707 MT971665
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1498T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518722 MT971508
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5943/2020
 ATTAAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C G28451C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518735 MT971768
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518736 MT971769
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A5603C T7540C C8626T C14408T G16647T C18555T G22992A G23401A A23403G G24416A GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518745 MT971778
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5970/2020
 ATTA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T G18462A C18555T C21575T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518746 MT971799
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23895T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518747 MT971800
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G13082T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518748 MT971801
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18267T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518749 MT971802
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G C26681T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518750 MT971803
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518751 MT971804
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518752 MT971805
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A79G C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518753 MT971806
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_518754 MT971807
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T C16247T G16647T C18267T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518765 MT971818
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22987T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518766 MT971819
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518767 MT971820
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518768 MT971821
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G12718A C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518769 MT971822
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_518770 MT971823
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C G14241T C14408T C15654T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518773 MT971826
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518789 MT971845
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3411T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518791 MT971847
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T C6968T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518969 MT970744
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28409T GGG28881AAC

EPI_ISL_518970 MT970745
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_518971 MT970746
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C10030T C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518973 MT970747
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T4402A T7540C C14408T G16647T T18417C C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518975 MT970749
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519660 MT970742
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4364/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519893 MT971122
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC

EPI_ISL_519914 MT971143
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519953 MT971187
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5188/2020
 ATTAAAGGTTTA1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC

EPI_ISL_519986 MT971273
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC A29873T

EPI_ISL_519994 MT971320
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519995 MT971321
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5230/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A T23017G G23401A A23403G C23895T GGG28881AAC

EPI_ISL_520077 MT971271
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520160 MT971379
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520218 MT971495
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5469/2020
 ATTAAAGG1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_520219 MT971496
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520220 MT971497
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520221 MT971498
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A6208G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520222 MT971499
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520223 MT971500
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520226 MT971503
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520228 MT971505
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G12332T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_520230 MT971507
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520233 MT971510
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T AAGTCATTT686- A1163T C2106T C3037T C7113T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520234 MT971511
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520235 MT971512
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22987T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520237 MT971514
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520238 MT971515
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521272 MT973286
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521420 MT973105
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6664/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C8016T C13138T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521421 MT973106
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C11902T C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_521422 MT973107
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521423 MT973108
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G7393T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521424 MT973109
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521425 MT973110
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521426 MT973111
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_521427 MT973112
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_521428 MT973113
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6672/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_521429 MT973114
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G61T C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_521430 MT973115
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521431 MT973116
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C9348T C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521432 MT973117
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6676/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521433 MT973118
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521435 MT973120
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521436 MT973121
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521438 MT973123
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521440 MT973125
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521441 MT973126
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22898R G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521442 MT973127
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6686/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C A8358G C14408T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC

EPI_ISL_521443 MT973128
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_521444 MT973129
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1085T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_521445 MT973130
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A C23202A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521447 MT973132
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C17145T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521448 MT973133
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521449
 2020-07-20 2020-08-25
 Australia hCoV-19/Australia/VIC6693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G C26044T GGG28881AAC

EPI_ISL_522531
 2020-07-20 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2752/2020
 ATTAAAGGTT1- C241T C1059T C3037T A3057G C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_522532
 2020-07-20 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2753/2020
 ATTAAAGGTTTATAC1- C16G C241T T586C C1059T C3037T C11916T C14408T C16650T A20675T A21782G A23403G G25563T G29179T G29779T A29903-

EPI_ISL_522533
 2020-07-20 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2754/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_522535
 2020-07-20 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C1059T C3037T G7940C C11916T C14408T C16650T A20675T A23403G C24897A G25563T G29179T G29779T AAA29901-

EPI_ISL_522537
 2020-07-20 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2758/2020
 ATTAAAGG1- C241T C1059T C3037T A3057G C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_522538
 2020-07-20 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2759/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_523685
 2020-07-20 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T T1918C C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_523686
 2020-07-20 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C7267T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523689
 2020-07-20 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C7267T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523690
 2020-07-20 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C622T C3037T G4657T T5182C C11758T C12043T C13275T C14408T C15324T G16846T C16887T A23403G C25075T C25904T C29733T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525554
 2020-07-20 2020-08-31
 Italy hCoV-19/Italy/APU-UniMI-123PT/2020
 A1GGCCCGA C241T C3037T G14294A C14408T T16439C C17326T A23403G C24117T C27710T A29892C AAAAAAA29897-

EPI_ISL_525976
 2020-07-20 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1209C C3037T G10793T C14408T C18877T A23403G A25076G G25563T G25660C C26192T G27613A

EPI_ISL_525977
 2020-07-20 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14424G G18880T T19839C A23403G G24794T GGG28881AAC GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_525978
 2020-07-20 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10038T C14408T C20233T A23403G G25563T G29553A CGATCGAGTG29750-

EPI_ISL_525979
 2020-07-20 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T T1983C C3037T G6865T G13435A C14408T C17734T T21594C A23403G G25563T C27964T

EPI_ISL_525980
 2020-07-20 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G252T A1005G C3037T T6407A C14408T T15427C G20980A A23403G C27335T GCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29783-

EPI_ISL_525981
 2020-07-20 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7735T C14408T C15024T C16260T C20429A A23403G G25563T C28821A

EPI_ISL_525982
 2020-07-20 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1581/2020
 ATTAAAG1- C241T C3037T C3487T G6532T C11308T C14408T T15264C C16332T C19170T A23403G C25791T C28854T C29614T

EPI_ISL_525983
 2020-07-20 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1927C C3037T C10319T C14408T C14576T A18424G C21304T C21575T A22255T A23403G G25563T G25907T C27964T C28472T C28869T

EPI_ISL_526103
 2020-07-20 2020-09-01
 United States hCoV-19/USA/WA-OHSU-1571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1059T C1093T C3037T T5290C C14408T A15640G T16425G C17639T A23403G G25563T T25689A C26455T

EPI_ISL_526371
 2020-07-20 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A93C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G G28073A C29870A

EPI_ISL_526378
 2020-07-20 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A9528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T T5158C C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC C29870A

EPI_ISL_527596 MT958228
 2020-07-20 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G23856T G28373T C28854T G29747A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529014
 2020-07-20 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE99752/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C4002T G10097A C10252T C13536T C14408T T21154G A23403G C23731T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_529015
 2020-07-20 2020-09-09
 Italy hCoV-19/Italy/ABR-IZSGC-TE99753/2020
 ATTA1GACT C241T C3037T C4002T G10097A C10252T C13536T C14408T T21154K A23403G C23731T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_529554
 2020-07-20 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9832F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529555
 2020-07-20 2020-09-10
 United Kingdom hCoV-19/England/ALDP-983303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529556
 2020-07-20 2020-09-10
 United Kingdom hCoV-19/England/ALDP-983576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532666
 2020-07-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8AACC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T C19488Y A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532837
 2020-07-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7CBF67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T G2183A C3037T A9433T T9668C G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532869
 2020-07-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7FE226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C11479T C14408T G15602A G21624T A23403G A23639G G27467T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532892
 2020-07-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7DADD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1960T C3037T A3672M T8761A G10097A G13993T C14408T G17122T G18960T A21165R A23403G G24757T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532893
 2020-07-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7BE170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T T4714C C7101T G10097A C10401T C13536T C14408T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532915
 2020-07-20 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-7AC1A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532918
 2020-07-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7AB5D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532935
 2020-07-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7C91EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T G2035T C3037T G8102T C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532944
 2020-07-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-7FEE6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A C5956T G8120C C14408T C15738T T19839C C21646T A23403G A24205T C25613T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532958
 2020-07-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7FDAB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C11479T C14408T G15602A G21624T A23403G A23639G GGG28881AAC T29361Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534244
 2020-07-20 2020-09-11
 Sweden hCoV-19/Sweden/20-52418/2020/P1
 C241T C3037T C5826T T6334C T8063G C10818T C13011T C14408T G22992A A23403G C24378T G26158T T26966C

EPI_ISL_535299
 2020-07-20 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020229996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C8208T C14408T C20555T C21772T A22101T A23403G G25563T TTCTTATTG27695- C28695T

EPI_ISL_535300
 2020-07-20 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020230022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C8208T C14408T C20555T C21772T A22101T A23403G G25563T TTCTTATTG27695- C28695T G28851A

EPI_ISL_535301
 2020-07-20 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020230030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T A6414G C8208T C14408T C20555T C21772T A22101T A23403G G25563T TTCTTATTG27695- C28695T C29870A

EPI_ISL_535303
 2020-07-20 2020-09-14
 United States hCoV-19/USA/NM-NMDOH-2020230064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C8208T C14408T C20555T C21772T A22101T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_539803
 2020-07-20 2020-09-21
 China hCoV-19/Hong Kong/VM20061555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313Y C3037T C14408T C21597T A23403G G25407T C25658T GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539813
 2020-07-20 2020-09-21
 China hCoV-19/Hong Kong/VM20063264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C16985T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541179
 2020-07-20 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1206/2020
 ATTA1- C21T C241T C2416T C3037T C6401T C10116T C14408T A23403G G25555T G25563T C25728T G26233T C27881T T28250G G28362A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_541303
 2020-07-20 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3177T G3896T A6426G C10188T C14408T C17745T A23403G T24982C G25494T G25563T A26231C T27531C C27964T G28109A G28690T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_541692
 2020-07-20 2020-09-23
 India hCoV-19/India/MH-NIV-124593/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T TT4273GA C5700A T6238C C14408T C15237T C20384T T20949C A23403G C23604A T23952G G23957A C27944T G28209C GGG28881AAC C29555T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541693
 2020-07-20 2020-09-23
 India hCoV-19/India/MH-NIV-125643/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C1101T C1288T C2334T C3037T C5700A G9190T C14408T A23403G GGG28881AAC G29810T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_548264
 2020-07-20 2020-09-26
 United States hCoV-19/USA/CA-CZB-3295/2020
 AT1- C241T C2453T C3037T C5512T C5812Y C14408T A22759G A23403G G24535T G28580C GGG28881AAC AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_548327
 2020-07-20 2020-09-26
 United States hCoV-19/USA/CA-CZB-3294/2020
 ATTA1- G7S C241T C313T C3037T T14127C C14408T T14745G G19180T G22154T A23403G T27645A G27666A GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548486
 2020-07-20 2020-09-26
 United States hCoV-19/USA/CA-CZB-3681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGT1- C241T G1021A C3037T C4582T G6404T T9640Y C14408T C18481Y C19859T A20268G A23403G T25123C G25654K C27925T G28378T G28881T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548497
 2020-07-20 2020-09-26
 United States hCoV-19/USA/CA-CZB-3866/2020
 AT1-Y C241T G1961A C3037T C9360T C14408T C17010T A20268G A23403G T24076C C26735T C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_556520
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9475E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C835T C1213T C3037T C5700A G6337R C7164T C14408T C18981T A23403G C23525T C25820T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556524
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2488T C3037T C14408T T16374C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556526
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9479AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3549A C5173T A9433T G10265A C10401T C14408T A19650G G21538A A23403G C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556529
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-947D67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T G7393A C7768T A8773G C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556533
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-947A7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5329A C11514T C13168T C14408T C18877T C22444T A23403G G24764T G25563T C26735T C27059T G27806T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556534
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-947AF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C14408T T20653C C21637T A23403G G24368T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556538
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94759C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G9646T G10097A C13536T C14408T A23403G A23592T C23731T C24912T G25440T C27970T C28674T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556568
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946FEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T G2035T C3037T G8102T C14408T C18744T A18978G G21372T A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556641
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B02E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2922C C3037T A4926C C14408T C15049T G15602A G21624T C22458T A23403G GGG28881AAC G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556646
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B71A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C3037T AAT6506- C11674T C12253T C12455M C14408T A20355G A23403G G25563C C27389Y G28337A GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556665
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2922C C3037T A4926C C14408T C15049T G15602A G21624T A23403G GGG28881AAC G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556718
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949F32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T T7222A C14408T G16700T A23403G G26506A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556823
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948BF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2962R C3037T C14408T G15438T A23403G G26918T A28081G C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556842
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556844
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941B18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T G960T C3037T C3261T G12067T C14408T A15984T C18959T C20946T C22075T A23403G C27945T G28086T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556886
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9424EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1758T C3037T G4510A C14408T G14712A G15438T A23403G C23410Y G25785T GGG28881AAC G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556892
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-942A56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556917
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-947F70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T A23403G G23545T G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556920
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94811F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556930
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1960T C3037T T8761A G10097A G13993T C14408T G17122T G18960T A23403G G24757T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556935
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-947E46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T A23403G G23545T G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556949
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9488FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556971
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94807C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1960T C3037T T8761A G10097A G13993T C14408T G17122T G18960T A23403G G24757T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556975
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T G2035T C3037T G7936A G8102T C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556983
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/Wales/CAMC-9484E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557244
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-8731C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C4596T G5972A T11915G A11992T C12100A C14322T C14408T G23120T A23403G G25555T A27062R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557350
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-875DCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4456T C14408T C16394T C19170T G19509A A21509G A23403G G25906T GGG28881AAC T29568C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557394
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-874069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557400
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-873B4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_557442
 2020-07-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-876A1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7360A C14408T G17964T T19839C C19955T T21854C A23403G A24730T A25741G C26078T C26681T T27285C GCTGGT28086- A28095G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561238
 2020-07-20 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-1746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563830
 2020-07-20 2020-09-30
 Australia hCoV-19/Australia/VIC13769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C17762T C18555T C22480T G22992A G23401A A23403G C25672T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563887
 2020-07-20 2020-09-30
 Australia hCoV-19/Australia/VIC13942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563998
 2020-07-20 2020-09-30
 Australia hCoV-19/Australia/VIC6696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G558K A1163T G2036K C3037T G3564K G4505K GT5743SY GG5765RS G7038K T7540C G11535K C14408T G15769K G16647T C18555T G19086K G22992A G23401A A23403G A24942W GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563999
 2020-07-20 2020-09-30
 Australia hCoV-19/Australia/VIC6697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T G7010R T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564055
 2020-07-20 2020-09-30
 Australia hCoV-19/Australia/VIC6788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T GT5743SY T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G G24933T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564163
 2020-07-20 2020-09-30
 Australia hCoV-19/Australia/VIC6960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C11919Y A14084R C14408T G16647T C18555T G22992A G23401A A23403G C23707Y T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564210
 2020-07-20 2020-09-30
 Australia hCoV-19/Australia/VIC7053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564214
 2020-07-20 2020-09-30
 Australia hCoV-19/Australia/VIC7067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564332
 2020-07-20 2020-09-30
 Australia hCoV-19/Australia/VIC7299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19263T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565141
 2020-07-20 2020-09-30
 Australia hCoV-19/Australia/VIC8691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565242
 2020-07-20 2020-09-30
 Australia hCoV-19/Australia/VIC8858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C20555Y G20995R G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_568473
 2020-07-20 2020-10-01
 United Kingdom hCoV-19/Scotland/CAMC-94907B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2433T T2734C C3037T C10036T C14408T C16260T G18090A C21772T A23403G G25299T G25563T C25844T C28821A C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_569018
 2020-07-20 2020-10-02
 France hCoV-19/France/IHU-0970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G G22894A A23403G C25886T G27414T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569019
 2020-07-20 2020-10-02
 France hCoV-19/France/IHU-0971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T A1163T A2783G C3037T C14408T G21761T A23403G GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT835026
 2020-07-20 2020-08-04
 Brazil SARS-CoV-2/human/BRA/RJ-DCVN2/2020
 AT1- C241T C3037T C14408T A23403G AA29902-

MT835027
 2020-07-20 2020-08-04
 Brazil SARS-CoV-2/human/BRA/RJ-DCVN3/2020
 ATTA1- C241T C3037T C14408T A23403G GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

MT970748
 2020-07-20 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T TGGTCATGTTATGGT508- A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

MW006590
 2020-07-20 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020229996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C8208T C14408T C20555T C21772T A22101T A23403G G25563T TTCTTATTG27695- C28695T

MW006591
 2020-07-20 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020230022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C8208T C14408T C20555T C21772T A22101T A23403G G25563T TTCTTATTG27695- C28695T G28851A

MW006592
 2020-07-20 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020230030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T A6414G C8208T C14408T C20555T C21772T A22101T A23403G G25563T TTCTTATTG27695- C28695T C29870A

MW006594
 2020-07-20 2020-09-15
 United States SARS-CoV-2/human/USA/NMDOH-2020230064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6414G C8208T C14408T C20555T C21772T A22101T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MW012277
 2020-07-20 2020-09-17
 Serbia SARS-CoV-2/human/SRB/KV07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T T3169C C6267T T9961C G10265A G10396T G12052T C14408T C15633T A15972G C16178T G19648T C19718T C20178T A23403G A25492G G28580T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW023440
 2020-07-20 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1206/2020
 ATTA1- C21T C241T C2416T C3037T C6401T C10116T C14408T A23403G G25555T G25563T C25728T G26233T C27881T T28250G G28362A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

MW023564
 2020-07-20 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3177T G3896T A6426G C10188T C14408T C17745T A23403G T24982C G25494T G25563T A26231C T27531C C27964T G28109A G28690T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_493197
 2020-07-21 2020-07-21
 Italy hCoV-19/Italy/Pascale_2/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G1524A C3037T A4235G A8030- T11075- C14408T T19369- T19988A G19990A TGGTAGAGTTGATGGTCAAGTAGACTTATTTAGAAATGCCCGTAATGGTGTTCTTATTACAGAAGGTAGTGTTAAAGGTTT19992- A23403G A28023- T28902C AG29860CT AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_493213
 2020-07-21 2020-07-21
 Italy hCoV-19/Italy/Pascale_3/2020
 ATTAAAGGTTTATACCT1- C241T C3037T A8030- T11075- C14408T T14704- T19369- A23403G C23422T T23849C CGCTTC26351- C29686T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_493429
 2020-07-21 2020-07-21
 United Kingdom hCoV-19/England/BIRM-6000E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189A C241T C3037T A4297G A4762G A5040G C14408T A23403G C23638T C24616T AG28877TC GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493432
 2020-07-21 2020-07-21
 United Kingdom hCoV-19/England/BIRM-6004A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189A C241T C3037T A4297G A4762G A5040G C14408T A23403G C23638T C24616T AG28877TC GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493437
 2020-07-21 2020-07-21
 United Kingdom hCoV-19/England/BIRM-600B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189A C241T C3037T A4297G A4762G A5040G C14408T C16409T A23403G C23638T AG28877TC GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493439
 2020-07-21 2020-07-21
 United Kingdom hCoV-19/England/BIRM-6011A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189A C241T C3037T A4297G A4762G A5040G C14408T A23403G C23638T AG28877TC GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493614
 2020-07-21 2020-07-21
 United Kingdom hCoV-19/England/PORT-2CF9E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20995T A23403G G23948C C25528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_493624
 2020-07-21 2020-07-21
 United Kingdom hCoV-19/England/PORT-2CFAFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6543T C14408T A14717G T19839C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498419
 2020-07-21 2020-07-27
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_280/2020
 C241T A1163T C3037T A6019G T8767C C14408T C15738T A23403G C26305T G28083T GGG28881AAC

EPI_ISL_498466 MT876598
 2020-07-21 2020-07-27
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_282/2020
 C241T A1163T C3037T A4778G C14408T T22501C G22894A A23403G GGG28881AAC

EPI_ISL_498467 MT876599
 2020-07-21 2020-07-27
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_285/2020
 T205C C241T A1163T G2288A C3037T G5037C T8156G C11824T C14408T A23403G A28008G GGG28881AAC

EPI_ISL_498616
 2020-07-21 2020-07-27
 Singapore hCoV-19/Singapore/718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1269R C3037T G8178R C8917T G9389A C14408T T19187Y C21736Y G21974T C22480T A23403G C25658T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_498814 MT847220
 2020-07-21 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_281/2020
 C241T A1163T C3037T C14408T G18155T G22706T A23403G C23422T G25855T GGG28881AAC G28904T

EPI_ISL_498815 MT847221
 2020-07-21 2020-07-28
 Bangladesh SARS-CoV-2/human/BGD/BCSIR_NILMRC_283/2020
 C241T A1163T C3037T C12043T C14408T C15738T G16718A C17999T T22912C A23403G G25644T C27275T GGG28881AAC A29406C G29736T

EPI_ISL_504176
 2020-07-21 2020-08-01
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC-284/2020
 C241T A1163T C3037T C14408T A23403G G27877A G28083T GGG28881AAC G29779T

EPI_ISL_509778 MT846415
 2020-07-21 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C14408T T22843C A23403G C25452T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_509780 MT846417
 2020-07-21 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0722/2020
 ATTAAAGGTT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C20178T G22205T G22992A A23403G G25563T C28087T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_509973 MT846662
 2020-07-21 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509975 MT846664
 2020-07-21 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509977 MT846667
 2020-07-21 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C6285T C14016T C14408T C19524T C20429T C21637T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509978 MT846668
 2020-07-21 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12488T C14408T G17964T G22801T A23403G C25528T G27084A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509980 MT846670
 2020-07-21 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509984 MT846675
 2020-07-21 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6238C C14408T C18486T A20268G C21721T TTA21991- T22162C A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509992 MT846684
 2020-07-21 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T G2035T C3037T G3728T G7743T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510538
 2020-07-21 2020-08-07
 China hCoV-19/Hong Kong/HKU-200723-107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T C6539T C9286T C10252T T11692C C14178T C14408T C19763T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510764 LR882227
 2020-07-21 2020-08-07
 Switzerland 210018
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T10076W G10265A C14408T C15720T A15972G A16210W C19718T A21323G A23403G G26700T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510765 LR882230
 2020-07-21 2020-08-07
 Switzerland 210019
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G6566T G10265A C14408T A15972G C17678Y A17864G C19718T T23042Y A23403G C23707T A25439C C25587T T28759Y GGG28881AAC G29422T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510766
 2020-07-21 2020-08-07
 Switzerland hCoV-19/Switzerland/210021_634_D02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T G9130T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510767 LR882241
 2020-07-21 2020-08-07
 Switzerland 210022
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T G4255T G9017R G9130T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510768 LR882239
 2020-07-21 2020-08-07
 Switzerland 210023
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T T3006Y C3037T T3574Y G3759K C9286T C12484Y C14408T A16210W T17675Y C19763T G21123T A23403G C25037T G28321T GGG28881AAC G28979K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510770 LR882238
 2020-07-21 2020-08-07
 Switzerland 210026
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1958R G2995S C3037Y A3612R C3623M T3724Y T5468W T6808Y T7305K G9130T A9859W T10076W C14408T C16111T A16210W C22347S T22516W A23403G C25844T T27319C G28487A G28541A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510796 LR882286
 2020-07-21 2020-08-07
 Switzerland 210064
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3144K C3587M A5368R T7035W G10265A C13225T C13430T C14408T C15720T A15972G C19718T T20299Y A20301R A20447R G20569T C20589T C21707T A23403G T24763C G26700T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_511986 LR882215
 2020-07-21 2020-08-10
 Switzerland 210017
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3653Y C4810T ACT6967RSY C14408T G20134K C20233T C22210T A23122M A23403G C27131T G28056A GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512485
 2020-07-21 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1695F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6500A A13953G C14408T G18318K C21242T A23403G C25463Y G26450T GGG28881AAC C28890T

EPI_ISL_512517
 2020-07-21 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16980C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512535
 2020-07-21 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169927/2020
 ATTAAAGGTTT1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512649
 2020-07-21 2020-08-11
 Latvia hCoV-19/Latvia/094/2020
 C241T A1202G C3037T C12513T C13730T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_512650
 2020-07-21 2020-08-11
 Latvia hCoV-19/Latvia/095/2020
 C241T A1202G C3037T C12513T C13730T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_514238
 2020-07-21 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_365/2020
 C241T C583T C3037T T4125C C6070T G11221T C12403T C14408T G20269T C21575T T21994C A23403G T23563C C24374A G28774T GGG28881AAC

EPI_ISL_514239
 2020-07-21 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_367/2020
 C241T A1163T C3037T C4331T C14408T C14576T G22226T A23403G GGG28881AAC C29518T

EPI_ISL_514240
 2020-07-21 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_368/2020
 C241T A1163T C3037T C3177T C4331T C14408T C18654T C21855T A23324T A23403G C27998T GGG28881AAC G28939T

EPI_ISL_514241
 2020-07-21 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_370/2020
 C241T C920T A1163T C3037T C14408T A20630G C21855T C22591T A23403G T25228G T27484C G28085T C28253T GGG28881AAC G29560A

EPI_ISL_514242
 2020-07-21 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_385/2020
 G127T C241T A1163T C2106T C3037T C14408T A23403G T23599G C28831T GGG28881AAC G29688T

EPI_ISL_514243
 2020-07-21 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_386/2020
 C241T A1163T C3037T C3177T C4331T C14408T C18654T C21855T A23324T A23403G C27998T GGG28881AAC G28939T

EPI_ISL_514245
 2020-07-21 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_369/2020
 C241T A1163T C3037T C14408T C18654T C21855T A23403G GGG28881AAC

EPI_ISL_514246
 2020-07-21 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_381/2020
 C241T C2509T C3037T C14408T C18877T C22444T A23403G G25494T G25563T C26735T G28077T C28854T

EPI_ISL_514247
 2020-07-21 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_382/2020
 C241T A1163T G2288A C3037T T8156G C14408T G18149T A23403G C25339T G25456T GGG28881AAC

EPI_ISL_514251
 2020-07-21 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_383/2020
 C241T A1163T C3037T C4331T C14408T C14576T G22226T A23403G GGG28881AAC C29518T

EPI_ISL_514252
 2020-07-21 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_384/2020
 C241T A1163T C3037T A11780G C14322T C14408T C16708T G20931T G21974C C22591T A23403G G24197T GGG28881AAC

EPI_ISL_514299
 2020-07-21 2020-08-16
 Israel hCoV-19/Israel/CVL-n26412/2020
 ATTAAAGGTT1- C66A C241T C1059T C3037T G3122T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T T28088A G28812A G29540A

EPI_ISL_514300
 2020-07-21 2020-08-16
 Israel hCoV-19/Israel/CVL-n26425/2020
 AT1- C241T C1059T C3037T C10969T C11916T C14408T C18998T T19458C A20023G A23403G G24098T G25563T G26217T G29540A A29752T

EPI_ISL_514301
 2020-07-21 2020-08-16
 Israel hCoV-19/Israel/CVL-n26427/2020
 ATTA1- C241T C683T C1059T C3037T C3041T C6402T T7759G T10249C C10833T G11083T C14408T G17427T A23403G G25563T C28854T

EPI_ISL_514302
 2020-07-21 2020-08-16
 Israel hCoV-19/Israel/CVL-n26455/2020
 ATT1- C241T C683T C1059T C3037T C6402T T7759G T10249C C10833T G11083T C14408T G17427T G22899T A23403G G25563T C28854T

EPI_ISL_514580
 2020-07-21 2020-08-17
 Bangladesh hCoV-19/Bangladesh/NGRI_NSTU_16/2020
 A1G AAA4- C241T A1163T G2398T C3037T A8026G A10323G C14408T A23403G T24934C GGG28881AAC AAAAAA29898-

EPI_ISL_514613
 2020-07-21 2020-08-17
 Bangladesh hCoV-19/Bangladesh/NGRI_NSTU_18/2020
 TTAAAGG2C T10C T13C CAGG21T -28ACTTCTCTT C241T A1163T C3037T C10448T C14408T G18803T A23403G GGG28881AAC T29092A -29904AAAA

EPI_ISL_515622
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002226/2020
 ATTAAAGGT1- C241T C1427T C3037T G5135C C14408T T17268C A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_515623
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002227/2020
 ATTA1- C241T G2164C C3037T C6027T C14408T C16946T A20268G C21736T A23403G A27753C

EPI_ISL_515628
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002234/2020
 AT1- C241T C3037T C4002T G10097A C13536T C14408T C18747T C19586T A23403G C23731T C28253T GGG28881AAC G29425T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515634
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002243/2020
 ATTAAAGGT1- C241T C2094T C3037T C12119T C14408T G16853T T17250C C17745T A23403G C25046T C25292T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_515639
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002253/2020
 A1- C241T G2144T C3037T C10078T T10163C C14408T A23403G C23625T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_515641
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002256/2020
 A1- C241T C3037T G3239T T9508C C14408T C22675T A23403G G23868T G24794T C28511T GGG28881AAC C28887T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515651
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002269/2020
 ATTAA1- C241T C3037T C4002T G10097A C13536T C14408T C20380T A23403G GGG28881AAC G29425T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515654
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002273/2020
 C241T C2013T C3037T C4002T C9866T G10097A C13536T C14408T C18747T A23403G C23731T C26822T GGG28881AAC G29425T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515655
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002274/2020
 ATTAAAGGTTTA1- C241T C3037T C7011T T12503C C14408T C15240T G22785A A23403G GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515658
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1820A G3025T C3037T C6762T C6781T T12503C C14408T G15372T A23403G G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515659
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1820A G3025T C3037T C6762T T12503C C14408T G15372T A23403G G25770T GGG28881AAC C29259T C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515660
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002280/2020
 ATTA1- C241T C3037T C4002T A9529G G10097A G11365C C13536T C14408T C18747T A23403G C23731T GGG28881AAC G29425T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515661
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002281/2020
 ATTAAAGGTTTATAC1- C241T C3037T C4002T G10097A C13536T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_515662
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002282/2020
 ATTA1- C241T C2062T C3037T C4002T T8323C G10097A C13381T C13536T T14345C C14408T T15437C G18292T A23403G C23731T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515666
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3737T C4276T C6762T T12503C C14408T A23403G G25770T C27654T C27945T GGG28881AAC C29721T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_515682
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A4994G C6762T T12503C C13680T C14408T A23098G A23403G G25455T G25770T C27549T C28236T GGG28881AAC C29721T C29754T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515722
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002350/2020
 ATTAAAGGTTT1- C241T A964G C2094T C3037T T4111C T8761C A10994C C14408T G16853T A21282G A21924C A23403G C25292T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515723
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T A964G C2094T C3037T T4111C T8761C A10994C C14408T G16853T A21282G A21924C A23403G C25292T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515724
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002352/2020
 ATTAAAGGTT1- C241T C1288T C3037T C4002T G10097A A12390G C13536T C14408T G17592T C19983T C21646T A23403G C23731T G24812T C27741T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515728
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G102A C203T C241T C3037T A7064G C14408T T20685C C22675T A23403G C24061T T27384C C28639T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515729
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T T12503C C14408T C16490T T22822C A23403G C25416T G25770T C27131T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515731
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T C13536T C14408T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_515734
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C6762T T12503C C14408T A23403G G25455T G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515752
 2020-07-21 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T12503C C14408T C15212T C16936T C17336T A23403G T24691C GGG28881AAC C29721T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_516442 MT928970
 2020-07-21 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C1059T C2607T C3037T C14408T A14634G C18555T A23403G G25563T C28892T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516444 MT928972
 2020-07-21 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G1957T C3037T C11916T C14408T C22987T A23403G A23586G G25563T A26904G ACGATCG29749- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516777
 2020-07-21 2020-08-22
 United States hCoV-19/USA/SC-20-1803-T07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T C5547T C10319T A11740G C14408T G16710T G20176T G21578T A23403G T24274C A25121T G25563T C26256T GGG28881AAC GG29861TC GA29864CG ACAA29869GTGG A29874G AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876C

EPI_ISL_516778
 2020-07-21 2020-08-22
 United States hCoV-19/USA/SC-20-1820-T07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C3037T C5547T C10319T A11740G C14408T G16710T G20176T G21578T A23403G T24274C A25121T G25563T C26256T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_516784
 2020-07-21 2020-08-23
 South Korea hCoV-19/South Korea/KCDC2654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C8782T G11230T A11970G G20580T A23403C C26028T T28144C G28167A G28878A C28887T G29224A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_516785
 2020-07-21 2020-08-23
 South Korea hCoV-19/South Korea/KCDC2655/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C28G A30G C8782T G11230T A11970G G20580T A23403C C26028T T28144C G28167A G28878A C28887T AAAAAAAAAAAAAA29890-

EPI_ISL_517546
 2020-07-21 2020-08-24
 United Kingdom hCoV-19/England/SHEF-C33B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C14408T C21637T A23403G G24368T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517591
 2020-07-21 2020-08-24
 United Kingdom hCoV-19/Wales/PHWC-169B12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G G27877T A28523G GGG28881AAC

EPI_ISL_517909 MT966225
 2020-07-21 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1019/2020
 AT1- C241T C2416T C3037T C9521T C14408T C16616T A23403G G25563T C26885T C27603T C28887T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_517911 MT966230
 2020-07-21 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1021/2020
 AT1- C241T C2416T C3037T C9521T C14408T C16616T A23403G G25563T C26885T C27603T C28887T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_517912 MT966234
 2020-07-21 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1022/2020
 AT1- C241T C1059T C3037T A10323G G11417T C14408T G20679T T21291C A23403G G25563T G28842T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_517949 MT966223
 2020-07-21 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1059/2020
 A1- C241T C1059T C1441T C3037T C9298T C14408T C20436T A23403G C23635T G25127A G25563T C28892T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_517950 MT966224
 2020-07-21 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1060/2020
 ATTA1- C241T C2416T C3037T C9521T C14408T C16616T A23403G G25563T C26885T C27603T C28887T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_517951 MT966226
 2020-07-21 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C9521T C14408T C16616T A23403G G25563T C26885T C27603T C28887T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_517952 MT966227
 2020-07-21 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1062/2020
 AT1- C241T C2416T C3037T C9521T C14408T C16616T A23403G G25563T C26885T C27603T C28887T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_517953 MT966228
 2020-07-21 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1063/2020
 A1- C241T C2416T C3037T C9521T C14408T C16616T A23403G G24821T G25563T C26885T C27603T C28887T G29706T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_517954 MT966231
 2020-07-21 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1064/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T C9521T C14408T C16616T A23403G G25563T C26885T C27603T C28887T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_517956 MT966233
 2020-07-21 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1066/2020
 ATTAAAGGT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C21306T A23403G G25563T G26690T C28087T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518102 MT973153
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T G2036T G2604T C3037T G3564T G7038T T7540C G11535T G14277T C14408T G15769T G16647T G16787T C18555T G18859T G22992A G23401A A23403G G24933T G28559T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518104 MT973155
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T GTCATGTTA510- A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518105 MT973156
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518107 MT973158
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T G3564T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G G24933T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518113 MT973164
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518128 MT973179
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518190 MT973241
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G558T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G24933T T27785C GGG28881AAC C29718- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518229 MT973281
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518230 MT973282
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C20117T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518269 MT971912
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518270 MT971913
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518275 MT971918
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518277 MT971920
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_518278 MT971921
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518292 MT971935
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518329 MT971961
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6349/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22825C G22992A G23401A A23403G G26526T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_518331 MT971963
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18377T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518332 MT971964
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C A11595G C14408T G16647T C18555T C22480T G22992A G23401A A23403G C26895T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518333 MT971965
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518334 MT971966
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T G17370A C18555T G22992A G23401A A23403G C23613T C26801T C27889T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518336 MT971968
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_518339 MT971525
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518340 MT971526
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518341 MT971527
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2146T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518342 MT971528
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C G11083T C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518343 MT971529
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC C29754T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518344 MT971530
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518346 MT971532
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518349 MT971535
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C8655T C14408T G16647T C18348T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518350 MT971536
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518351 MT971537
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T T1432C C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518353 MT971539
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518354 MT971540
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T5566A T7540C C11001T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518357 MT971543
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518359 MT971545
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518362 MT971548
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518364 MT971550
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_518369 MT971555
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T A6393G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518378 MT971564
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518383 MT971569
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518513 MT971449
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518514 MT971450
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518520 MT971456
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518544 MT971480
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518545 MT971481
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2227T C3037T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518547 MT971483
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518549 MT971485
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518550 MT971486
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G21255C G22992A G23401A A23403G C28725T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518553 MT971678
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518554 MT971679
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518555 MT971680
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518556 MT971681
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518557 MT971682
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518559 MT971684
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518560 MT971685
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_518561 MT971686
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518562 MT971687
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19955T G22992A G23401A A23403G GGG28881AAC G29692T G29777T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518563
 2020-07-21 2020-08-25
 Australia hCoV-19/Australia/VIC5765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C27661T GGG28881AAC G29692T G29777T C29838M TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_518564 MT971688
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T C15853T G16647T C18555T C21933T G22992A G23401A A23403G G28286A GGG28881AAC G29692T G29777T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518568 MT971692
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518569 MT971693
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_518570 MT971694
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518571 MT971695
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518572 MT971696
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C16887T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518573 MT971697
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC C29837T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_518574 MT971698
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518584 MT971707
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518623 MT971747
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518632 MT971756
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23895T G27541T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518633 MT971757
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518642 MT971572
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518644 MT971574
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518665 MT971617
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5882/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518669 MT971621
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518671 MT971629
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518672 MT971630
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518673 MT971631
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518674 MT971632
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17762T C18555T C22480T G22992A G23401A A23403G T28862C GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518678 MT971636
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T G16935T C18555T G22992A G23401A A23403G T27785C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518679 MT971637
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T A1381T C3037T G3114T C6196T T7540C A12898G C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518686 MT971644
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5907/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C17762T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518692 MT971650
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T C26684T T27785C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518695 MT971653
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518696 MT971654
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518697 MT971655
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5918/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518698 MT971656
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518699 MT971657
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518700 MT971658
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518701 MT971659
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518703 MT971661
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518704 MT971662
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518705 MT971663
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518706 MT971664
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518712 MT971670
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5933/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T G18105T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518717 MT971675
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C17745T C18555T C18657T G22992A G23401A A23403G GGG28881AAC C28961T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518718 MT971676
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A C23127T G23401A A23403G GGG28881AAC G29692T G29777T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518719 MT971677
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T C29109T ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_518726 MT971603
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518727 MT971604
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518733 MT971766
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518755 MT971808
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14220T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518756 MT971809
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518757 MT971810
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_518758 MT971811
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22498T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518759 MT971812
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518760 MT971813
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29218T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518763 MT971816
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A27809G GGG28881AAC C29743T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_519125 MT970928
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C27476T GGG28881AAC

EPI_ISL_519135 MT970941
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519253 MT971060
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4869/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519254 MT971061
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4870/2020
 ATTA1- C241T A1163T C2662T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519255 MT971062
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4871/2020
 ATTAA1- C241T A1163T C3037T G3114T T7540C C12183T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520022 MT971183
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5257/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520108 MT971308
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520109 MT971309
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13051T C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520111 MT971310
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18692T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520119 MT971318
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5356/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T A17113G C18326T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520243 MT971519
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_520244 MT971520
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2340T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520245 MT971521
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5499/2020
 ATTA1- C241T A1163T C3037T C6033T T7540C C9438T C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC G29587A

EPI_ISL_520246 MT971522
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520247 MT971523
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4999T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520248 MT971524
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5502/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_521154 MT971970
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24382T GGG28881AAC C29218T

EPI_ISL_521156 MT971972
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_521157 MT971973
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521158 MT971974
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18004T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521160 MT971976
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521161 MT971977
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521162 MT971978
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T9865A T9868C C14408T C15352T G16647T C18555T G22992A G23401A A23403G G25500C A26162G GGG28881AAC

EPI_ISL_521163 MT971979
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_521165 MT971981
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_521195 MT972011
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521202 MT972018
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6410/2020
 ATTAAAGGTTTATACCTTCC1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C21365T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521203 MT972019
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T C6040T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521204 MT972020
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521206 MT972022
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521230 MT972041
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G A17615G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521260 MT972071
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C5144T T7540C C14408T C16260T G16647T C18555T G22992A G23401A A23403G C25728A GGG28881AAC

EPI_ISL_521261 MT972072
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521262 MT972073
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521263 MT972075
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521275 MT973288
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4303C T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26198T GGG28881AAC

EPI_ISL_522539
 2020-07-21 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- G204T C241T C1059T C3037T G9794A C11916T C14408T C14805T C16650T A20675T A23403G G29179T G29779T

EPI_ISL_522540
 2020-07-21 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2761/2020
 ATT1- A4T C241T C1059T C3037T G11365T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAA29894-

EPI_ISL_522541
 2020-07-21 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2762/2020
 ATT1- C1059T C3037T C11916T C14408T C16650T A20675T A23403G G26144T G29179T G29779T AAAA29900-

EPI_ISL_522543
 2020-07-21 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2764/2020
 ATTAAAG1- C241T C1059T C3037T A3057G C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_525486
 2020-07-21 2020-08-31
 Sri Lanka hCoV-19/Sri Lanka/CDR-KK57/2020
 ATTA1- C241T C1059T C2939T C3037T G3849T C9967T T10243C C10755T C14408Y G15556A AA21550MW A23403G G23868T G25563T G25660T T25858C A27379R GAT27382SWY C28603T G29527T G29808T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_525489
 2020-07-21 2020-08-31
 Sri Lanka hCoV-19/Sri Lanka/CDR-KK230/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T A1955G T2868C C2939T C3037T G3849T TT4273KW G9225K T10243C C10755T C14408T G15556A G15594R AA21550CT A23403G G23868T C25047T A25381M G25563T G25660T T25858C A27379R GAT27382SWY GC27882SY C28603T G29808T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_525739
 2020-07-21 2020-09-01
 United States hCoV-19/USA/WA-S2749/2020
 ATTAAAGGTTT1- C241T T833C C1059T C3037T A3805G C6541T C11379T C12076T C14408T C18348T A21963G A22320G A23403G C25427A G25563T C27964T C28093T C29625T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525985
 2020-07-21 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1684T C3037T G4631A C6539T A10286G A12829G C14408T G18898T A23403G A25315G GGG28881AAC A29488G

EPI_ISL_525986
 2020-07-21 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13549G C14408T G19969A A20268G A23403G A26334G C28854T

EPI_ISL_525987
 2020-07-21 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1603/2020
 ATTAAAG1- C241T C3037T G7798T T11134C C14408T A18535G C19011T A23403G G25819A C26681T T27499C TTGTGC27786- GGG28881AAC

EPI_ISL_526104
 2020-07-21 2020-09-01
 United States hCoV-19/USA/WA-OHSU-1611/2020
 ATTAAAG1- C241T AAGTCATTT686- C3037T A13815T C14408T C18486T A20268G T22162C A23403G C28854T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_526327
 2020-07-21 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97D6A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C5672T C6401T C14408T G20377A A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526369
 2020-07-21 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A9397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10097A G11906C A12180G C14408T A19228G A23403G C23731T G28580T C28720T GGG28881AAC C29421T

EPI_ISL_526376
 2020-07-21 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A94D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1052Y C3037T C3486A C3653T C14408T A23403G G23574S C25624T GGG28881AAC C29870A

EPI_ISL_527597 MT958229
 2020-07-21 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1532/2020
 ATTAAAGGTTTA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_527666
 2020-07-21 2020-09-04
 United States hCoV-19/USA/IN-CDC-6387/2020
 C157T C241T C2416T C3037T T12112C C14408T G16146T C21614Y G21800K G21974S A23403G G25563T G26233T C29642Y AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528746
 2020-07-21 2020-09-09
 Indonesia hCoV-19/Indonesia/JB-TFRIC19-R47609/2020
 ATTAAA1- C241T G1820A C3037T T3478A G11801A C14120T C14408T A15861G C15960T C18877T A23403G C25006T G25563T C26735T G29212A

EPI_ISL_529553
 2020-07-21 2020-09-10
 United Kingdom hCoV-19/England/ALDP-983215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T G625T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532651
 2020-07-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8AEDC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532848
 2020-07-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7E1E31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532877
 2020-07-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7F9C78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532882
 2020-07-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7F000C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A A10844G T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532897
 2020-07-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-7EC980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532900
 2020-07-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7F5BD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C11479T C14408T G15602A G21624T A23403G A23639G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532933
 2020-07-21 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-7F0E4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532949
 2020-07-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-7F1B91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T A24340R G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532950
 2020-07-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-7F138A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535661 MW001672
 2020-07-21 2020-09-15
 United States SARS-CoV-2/human/USA/AR-CDC-7940/2020
 G199A C241T C1059T C2925T C3037T G11083T C14408T G15128T G17110T G18538T A23403G G25563T G26690T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_537380
 2020-07-21 2020-09-16
 Spain hCoV-19/Spain/GA-CSIC-97006346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T C3159T C3768T T6067C A10874G C12459T A12961G C14408T C14599T C21614T G21624T G23126T A23403G C25096T G26653A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_539814
 2020-07-21 2020-09-21
 China hCoV-19/Hong Kong/VM20066524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C16985T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539815
 2020-07-21 2020-09-21
 China hCoV-19/Hong Kong/VM20066568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C16985T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541309
 2020-07-21 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1372/2020
 ATTAAAGGTTTA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T A14397G C14408T A23403G G25563T C28087T G28747T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_541315
 2020-07-21 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C14408T C21440T A23403G C26895T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_541318
 2020-07-21 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1381/2020
 ATTA1- C241T C1059T C1385T G1738T C3037T G3242A A10761G C11916T C14408T A23403G G25563T C28087T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_541319
 2020-07-21 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C1385T G1738T C3037T G3242A T11044C C11916T C14408T C20703T A23403G G25563T C28087T G29332T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_541886
 2020-07-21 2020-09-23
 Spain hCoV-19/Spain/MD-IBV-99007112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T T445C C3037T C6286T C14408T G21255C C21772Y C22227T A23403G C26801G C27944T C28932T G29645T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_541887
 2020-07-21 2020-09-23
 Spain hCoV-19/Spain/MD-IBV-99007113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T445C C3037T C3177T C6286T C14408T C19017T C22227T A23403G C25665T C26801G C28932T G29645T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_547444
 2020-07-21 2020-09-24
 United Kingdom hCoV-19/Gibraltar/203360729/2020
 ATTAAAGGT1- C241T C2973T C3037T C14408T G19398T C20312T C21597T A23403G GGG28881AAC C29144T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_547513
 2020-07-21 2020-09-24
 Netherlands hCoV-19/Netherlands/OV-RIVM-10152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C7528T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547632
 2020-07-21 2020-09-24
 United States hCoV-19/USA/WI-GMF-11750/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- T141C C241T C934T C1059T G2782T C3037T T9070C C12132T A12390G C14408T C18283T A23403G G25563T T28823C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547633
 2020-07-21 2020-09-24
 United States hCoV-19/USA/WI-GMF-11818/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C934T C1059T G2782T C3037T T9070C C12132T A12390G C14408T C18283T C22329Y A23403G G25563T T28823C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547634
 2020-07-21 2020-09-24
 United States hCoV-19/USA/WI-GMF-11874/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T1592C C2416T C3037T C6113T C14408T T16530A G21372T AA21550MW A23403G G25563T C29769T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_547635
 2020-07-21 2020-09-24
 United States hCoV-19/USA/WI-GMF-11890/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T A20268G A23403G G28739T C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548288
 2020-07-21 2020-09-26
 United States hCoV-19/USA/CA-CZB-3303/2020
 AT1- G219T C241T C1059T C3037T A8252G C9360T C11833T C14408T G14548R C16394Y A23299G A23403G G25311T G25563T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_548311
 2020-07-21 2020-09-26
 United States hCoV-19/USA/CA-CZB-3299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTG1- C241T C1059T C3037T C3096T C11758T C14408T C16260T C16575T A23403G C23625T G25563T C26270T G27955A C28821A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_548336
 2020-07-21 2020-09-26
 United States hCoV-19/USA/CA-CZB-3304/2020
 AT1- C241T T1582W C3037T C6781T C11916T C14408T C16887T C19185T C21622T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_548494
 2020-07-21 2020-09-26
 United States hCoV-19/USA/CA-CZB-3882/2020
 CG241T C3037T C10834T C14408T C17135T C18086T T19839C A23403G G27430A GGG28881AAC A29403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_548496
 2020-07-21 2020-09-26
 United States hCoV-19/USA/CA-CZB-3889/2020
 A1- T3Y C241T C3037T C14408T C16386T C20762T C23191Y A23403G C26060T GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_548511
 2020-07-21 2020-09-26
 United States hCoV-19/USA/CA-CZB-3874/2020
 T2K C241T C3037T C14408T A20268G C20759T A23403G T24076C C25578T G28077T C28854T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_548514
 2020-07-21 2020-09-26
 United States hCoV-19/USA/CA-CZB-3875/2020
 C241T C313Y A2251G C3037T G14055T C14408T A20268G C20759T A23403G T24076C C28253T C28854T A29876R AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_548525
 2020-07-21 2020-09-26
 United States hCoV-19/USA/CA-CZB-3894/2020
 AT1-Y C241T G2323K CT2325SY G2393K CTA2571- C3037T C14408T G18612A A21026G A22759G A23403G C26464A C28087T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_548533
 2020-07-21 2020-09-26
 United States hCoV-19/USA/CA-CZB-3887/2020
 ATT1- T41G C241T C2997T C3037T C4582T C14408T T14508C T16161C A16500G A20268G A23403G T24238Y G27621T C28854T G28985T C29769T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_548543
 2020-07-21 2020-09-26
 United States hCoV-19/USA/CA-CZB-3890/2020
 ATTAAAGGTTTA1- C241T G2305T C3037T G13858T C14408T C17410T A20268G C20759T A23403G C23896T T24076C C25156T C25578T C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_556518
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949EBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G C25624T A27400G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556523
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-947A60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3569G C3695T A6211G A8659G A9883G C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556542
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94822B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2488T C3037T A11678R C14408T T16374C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556548
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9472D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T G2183A C3037T A9433T T9668C G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556552
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9470D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556554
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949E62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556566
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94867A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G10688A G13240A C14408T C16332T C20389T T22282C A23403G C23683T C23731T C25782T G28048T G28580T GGG28881AAC C29514T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556707
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94C245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A T13794G C14408T A17184G A23403G GGG28881AAC G29527T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556846
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C11379T C14408T C21234T A23403G G25314T G25437K GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556872
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-942713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G25775T C27807T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556889
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-942582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1662T C1973T C3037T C3261T C4456T C5621T G9479T A11430G C14408T A20288C A23403G C25624T G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556906
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-943080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556912
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-942115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C11379T C14408T C21234T A23403G G25314T C27945Y GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556919
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9481F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5157T C5301T A7064R C13247T C14408T C14937T T18144C A23403G G26211T C26625T C26681T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556945
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9478B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C874T C3037T G4444T T6699C C8640T C10635T C14408T C17746T A23403G G23868T G24872A GGG28881AAC C29215T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556952
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9481B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G11906C A12180G C14408T A19228G A23403G C23731T C26198T G28580T C28720T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556981
 2020-07-21 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3403T A6308C C14408T T19839C TGG21294AAA A23403G G25793T C26681T C28846T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561105
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1065G C3037T C3373A C9561T C14408T C16575T A23403G G24586T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561107
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561110
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T G13126T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561111
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9891T C14408T C21736T T22213C A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561112
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561113
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2810G C3037T C3373A C9561T C14408T C16575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561114
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T G14430C A20268G G21974C G22706T A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561115
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC192573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A16395T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561116
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC192574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561119
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC192583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561120
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC192602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1065G T2884C C3037T C3373A C9561T C14408T C16575T A23403G G24586T C27434T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561121
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC192610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1065G C3037T C3373A T4871C C4893T C9561T C14408T C16575T A23403G G24586T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561122
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561125
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561127
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561128
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C14408T A20268G A23403G AAACGAACATGAAAA27386- C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561129
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561130
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9891T T10144G C14408T C21736T A23403G A25450G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561131
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561132
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561133
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T G12718A C14408T C16575T A23403G C25904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561135
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C6573T T9919C C14408T A20268G A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561137
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2810G C3037T C3373A C9561T C14408T C16575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561138
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/GC192751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T G14430T A20268G C21772T G22706T A23403G C28833T A29031C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561249
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3330T C9891T C14408T C21736T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561260
 2020-07-21 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C3622T C14408T G14430C A20268G G22706T A23403G C25276T C28833T A29031C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562760
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC9970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCC28879- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562922
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC10466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C6726T T7540C C9661T C14408T G15594T G16647T C18555T G19962K G22992A G23401A A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_563425
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC11596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C1912T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563439
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC11634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563475
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC11734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563487
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC11757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_563914
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC13992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563920
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC14002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3890R T7540C A8033C C14408T G16647T C18555T T22367Y C22480T G22992A G23401A A23403G C28087T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563926
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC14010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563930
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC14015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24422M GGG28881AAC C29218T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564000
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3737T T7540C G11083T C14408T G16647T C18555T C19217T A19426R G21255C G22992A G23401A A23403G C28725T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564001
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564056
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G558K G660K G663K A1163T G1488K G2036K G2247K G2604K C3037T G3564K G4505K G5155K G5196K G5233R G5375K G5847K G5880K C6468Y G6483K G7038K G7214K T7540C G8790K G9141K G10266K G10986K G11392K G11535K G12164K G12795K G13240K G13571K G14277K C14408T G14548R G15769K G16647T G17096K GG17848KK C18138M C18555T G19086K G21281K G22899K G22992A G23401A A23403G C23577Y G24557K G24933K G26262K G28079K GGG28881AAC G29229A G29779K G29781K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564057
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C643Y A1163T C3037T C7162T T7540C C11173Y C14408T G16647T C16952Y C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564058
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4402A GT5743SY GG5765RS T7540C C14408T G16647T C18555T G22992A G23401A A23403G A24942W GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_564059
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4402A GT5743SY T7540C G14316T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564060
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G A25697G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564061
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T GT5743SY T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_564062
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T GT5743SY T7540C G11083K C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564063
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T GT5743SY C7600T G7798T C14408T A23403G T23548C A26811G GGG28881AAC C29218Y CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564064
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25177K GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564065
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G G24926T C28776T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564066
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T GT5743SY GG5765RS T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G A24942W C27059T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564067
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564068
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_564069
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G G24926T C28776T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564070
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C14768T G16647T A17337G C18555T A19073G C22370M G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564071
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C835Y A1163T C3037T T7540C C14408T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564122
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564124
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15352Y G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564126
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_564127
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564129
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C1191Y C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564133
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564134
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564135
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6914/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7113Y T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564139
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564140
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564141
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T T15351W G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564143
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18508Y C18555T G22992A G23401A A23403G T28082C GGG28881AAC C29109M TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564149
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25690K GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564150
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3429T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564151
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22825C G22992A G23401A A23403G G26526T G28644A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564152
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T4303C T7540C C9532T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564155
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C66T C241T A1163T C1824T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC T29206K TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564156
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564158
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T C4421T T7540C C11355Y C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564159
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC6945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T T1603Y C3037T C4421T T7540C C11355T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564212
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564213
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C3737T T7540C C14408T G16647T C18555T C19217T G21255C G22992A G23401A A23403G C28725T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564333
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C5826Y T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_564334
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G20438T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_564359
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564360
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C20402Y C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564361
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3784Y T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564417
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T4634Y T7540C C12763Y C14408T C15720Y G16647T A17337G C18555T G22992A G23401A A23403G T24142Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564421
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C13019T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_564428
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2040Y C3037T C4586Y T7540C C14408T G16647T C18555T G22992A G23401A A23403G T26773C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564451
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564480
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564519
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564530
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C117Y C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564531
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C9165Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564532
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564533
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564538
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC7622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A27086G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_565008
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC8434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T GT5743SY C6033T T7540C T14145C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565722
 2020-07-21 2020-09-30
 Australia hCoV-19/Australia/VIC9796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_566063
 2020-07-21 2020-10-01
 United Kingdom hCoV-19/England/203060269/2020
 ATTAAAGGTTTATACCT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T C12513T C14408T G14866A C14980T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_568567
 2020-07-21 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-012/2020
 ATTAAAGGTTTA1- C241T C313T C3037T T4346C C9286T C10376T C14408T C14708T T22020C C22432T A23403G C28725T GGG28881AAC G29692T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

MT947558
 2020-07-21 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2749/2020
 ATTAAAGGTTT1- C241T T833C C1059T C3037T A3805G C6541T C11379T C12076T C14408T C18348T A21963G A22320G A23403G C25427A G25563T C27964T C28093T C29625T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT967902
 2020-07-21 2020-09-04
 United States SARS-CoV-2/human/USA/IN-CDC-6387/2020
 C157T C241T C2416T C3037T T12112C C14408T G16146T C21614Y G21800K G21974S A23403G G25563T G26233T C29642Y AAAAAAAAAAAAAAAAAAAAA29883-

MT971319
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T TGGTCATGTTATGGT508- C635T A1163T C3037T T7540C C14408T G16647T C17125T C18555T C22480T G22992A G23401A A23403G C25614T GGG28881AAC

MT971971
 2020-07-21 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T C20936T G22992A G23401A A23403G G24926A CAATTTGCTTTTGCTTGTCCTGACGGCGTAAAA27577- GGG28881AAC

MW012271
 2020-07-21 2020-09-17
 Serbia SARS-CoV-2/human/SRB/NP43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T G10265A C14408T C15720T A15972G C17766T C19718T A23403G G26700T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW023570
 2020-07-21 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1372/2020
 ATTAAAGGTTTA1- C241T C1059T C1385T G1738T C3037T G3242A C11916T A14397G C14408T A23403G G25563T C28087T G28747T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

MW023576
 2020-07-21 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C313T C3037T C14408T C21440T A23403G C26895T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

MW023579
 2020-07-21 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1381/2020
 ATTA1- C241T C1059T C1385T G1738T C3037T G3242A A10761G C11916T C14408T A23403G G25563T C28087T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

MW023580
 2020-07-21 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C1385T G1738T C3037T G3242A T11044C C11916T C14408T C20703T A23403G G25563T C28087T G29332T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_494756
 2020-07-22 2020-07-22
 Italy hCoV-19/Italy/Pascale_4/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C11008T C14408T A23403G G25135T A26915G TAATAGCTTCTTAGGAG29848- GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_494757
 2020-07-22 2020-07-22
 Italy hCoV-19/Italy/Pascale_5/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1191T C3037T G4255T A13748G C14408T A23403G C26522T A26530G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494759
 2020-07-22 2020-07-22
 Italy hCoV-19/Italy/Pascale_6/2020
 ATTAAAGGTT1- C241T C1191T C3037T TCAAGAGGG4138- T4149C G4255T A13748G C14408T A23403G C26522T A26530G GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_494761
 2020-07-22 2020-07-22
 Italy hCoV-19/Italy/Pascale_7/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C14408T T19839C C21575T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857T

EPI_ISL_494762
 2020-07-22 2020-07-22
 Italy hCoV-19/Italy/Pascale_8/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T G4255T T11075- C14408T T19369- A23403G A26530G A28023- GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_494763
 2020-07-22 2020-07-22
 Italy hCoV-19/Italy/Pascale_9/2020
 ATTAAAGG1- T9C A12T A14G C16T TC18GT AG22-T C241T C3037T G11083- C14408T T16456C T19369- C20380T A23403G A28023- C28093T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_494771
 2020-07-22 2020-07-22
 Italy hCoV-19/Italy/Pascale_10/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T A23403G C23589T A29844G TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_494774
 2020-07-22 2020-07-22
 Italy hCoV-19/Italy/Pascale_11/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C2488T C3037T T11075- C14408T T19369- A23403G G25621T A28023- GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_494775
 2020-07-22 2020-07-22
 Italy hCoV-19/Italy/Pascale_12/2020
 ATTAAAGGTTTATACCTTC1- C20T GT24- C241T C3037T A8030- T11075- C14408T T19369- A23403G C26858T A28023- G29009A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_494776
 2020-07-22 2020-07-22
 Italy hCoV-19/Italy/Pascale_13/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T586C C3037T T11075- C14408T T14704- T19369- A23403G G23675T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857TC

EPI_ISL_498618
 2020-07-22 2020-07-27
 Singapore hCoV-19/Singapore/720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C6310A C6312A G11083T C13730T A14691G C19524T T22270C C23185T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_498691
 2020-07-22 2020-07-27
 China hCoV-19/Liaoning/IVDC-04/2020
 C241T C2091T C3037T A5128G A8360G C13860T C14408T T19839C G19999T A23403G GGG28881AAC C28905T

EPI_ISL_498692
 2020-07-22 2020-07-27
 China hCoV-19/Liaoning/IVDC-01/2020
 ATTAAAGGT1- C241T C2091T C3037T A5128G A8360G C13860T C14408T T19839C G19999T A23403G GGG28881AAC C28905T

EPI_ISL_498693
 2020-07-22 2020-07-27
 China hCoV-19/Liaoning/IVDC-03/2020
 A4- C241T C2091T C3037T A5128G A8360G C13860T C14408T T19839C G19999T A23403G GGG28881AAC C28905T

EPI_ISL_498694
 2020-07-22 2020-07-27
 China hCoV-19/Liaoning/IVDC-02/2020
 C241T C2091T C3037T A5128G A8360G C13860T C14408T T19839C G19999T A23403G GGG28881AAC C28905T

EPI_ISL_508134
 2020-07-22 2020-08-04
 Australia hCoV-19/Australia/SAP443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G GGG28881AAC A29865G

EPI_ISL_509979 MT846669
 2020-07-22 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T G29734T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_509985 MT846676
 2020-07-22 2020-08-05
 United States SARS-CoV-2/human/USA/WI-UW-990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T C11956T C12025T C14408T T19839C G21800A A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_510771 LR882240
 2020-07-22 2020-08-07
 Switzerland 210028
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2966R C3037T C3096T C3261T G4510T C6968T T7034Y A9925T C14408T A15984T C20946T G21204K C22664T A23403G C25919Y GGG28881AAC G29717A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510773 LR882243
 2020-07-22 2020-08-07
 Switzerland 210032
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G3025R A3027R C3037T A3048W C3738T G9130T C14408T C16111T T17675Y A23403G T27319C G28346T G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510774 LR882246
 2020-07-22 2020-08-07
 Switzerland 210033
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T T6971Y G9130T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510775 LR882245
 2020-07-22 2020-08-07
 Switzerland 210034
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T T3144W G5373R G5555R A5563R C6286T C7819Y C14408T A16210W G21255C C22227T A23403G C26801G C27944T C28932T A29071G G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510776 LR882257
 2020-07-22 2020-08-07
 Switzerland 210035
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2905W C3037T A3904G G6611K A9859W A9912M T9916Y G9921K A9925M T10076W C10833T C12501Y C13824M C14408T G14420S C15324T G19947R C20589Y C20719T C22458Y G22592S C22758M A23403G C23731Y G28747K G28917T G29543K C29614Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510778
 2020-07-22 2020-08-07
 Switzerland hCoV-19/Switzerland/210037_640_F02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T T2931Y C3037T T3095W C9286T C14408T G16935T C19763T T21075W G21123T A21150R A23403G C24795T C25037T C28045Y G28321T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510805
 2020-07-22 2020-08-07
 Switzerland hCoV-19/Switzerland/210075_663_B06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2942Y C3037T T3115Y A3904G T6993W C10833T C14408T C15324T C22458T A23403G G28747T G28917T G29543T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510882 MT875354
 2020-07-22 2020-08-07
 United States SARS-CoV-2/human/USA/NMDOH-2020242033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C27889T A28158T C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_510883 MT875355
 2020-07-22 2020-08-07
 United States SARS-CoV-2/human/USA/NMDOH-2020242034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18486T A20268G T22162C A23403G A28158T C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_510884 MT875356
 2020-07-22 2020-08-07
 United States SARS-CoV-2/human/USA/NMDOH-2020242035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C18486T A20268G T22162C A23403G A28158T C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_510885 MT875357
 2020-07-22 2020-08-07
 United States SARS-CoV-2/human/USA/NMDOH-2020242037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C16457T C18486T A20268G T22162C A23403G C28854T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_510886 MT875358
 2020-07-22 2020-08-07
 United States SARS-CoV-2/human/USA/NMDOH-2020242038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18486T A20268G T22162C A23403G A28158T C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_510887 MT875359
 2020-07-22 2020-08-07
 United States SARS-CoV-2/human/USA/NMDOH-2020242040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C17285T C18486T A20268G T22162C A23403G C28854T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_510888 MT875360
 2020-07-22 2020-08-07
 United States SARS-CoV-2/human/USA/NMDOH-2020242041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_511988 LR882214
 2020-07-22 2020-08-10
 Switzerland 210031
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T G6902K G9130T T10885Y C12924Y C14408T C14605M C16111T A23403G T25959Y T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_511992 LR882224
 2020-07-22 2020-08-10
 Switzerland 210076
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2905W C3037T T3144K C4002T G5950K G10097R C13536T C14408T T17675Y G19732T A23403G C23731T C24082Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512380
 2020-07-22 2020-08-11
 United Kingdom hCoV-19/England/NOTT-112E2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T18096C A23403G T27264G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512484
 2020-07-22 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1695E7/2020
 ATTAAAGGTTTA1- C241T T1947C C3037T C7528T C14408T C18877T C21642T C22444T A23403G G25563T C26735T C28854T C29555T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_512537
 2020-07-22 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547D C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_512540
 2020-07-22 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512645
 2020-07-22 2020-08-11
 Latvia hCoV-19/Latvia/090/2020
 C241T A1558G C3037T T3289C C13860T C14408T A23403G C28236T GGG28881AAC

EPI_ISL_512832
 2020-07-22 2020-08-12
 Singapore hCoV-19/Singapore/796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G1821T C6310A C6312A G7560A T8429Y A9419G T10992C G11083T C13730T G16089A A16464G C19524T T19530G G21974C C23929T C27323T C28311T A29547R AAAAAAAAAAAA29892-

EPI_ISL_514434
 2020-07-22 2020-08-17
 Bangladesh hCoV-19/Bangladesh/NGRI-NSTU_02/2020
 A1GGATCTACAAGAGA TA3CG G7A TA11GGTTGGTTTGT TCCC18GGGA A26- C28T C241T C683T C2232T C2836T C3037T T3836A C14408T C18877T C22444T A23403G G23868T G25563T C26735T G27281T G28325T C28854T -29904AAAAAA

EPI_ISL_514440
 2020-07-22 2020-08-17
 Bangladesh hCoV-19/Bangladesh/NGRI_NSTU_03/2020
 ATTAAAGGTTTATACCTTCC1- C241T A1163T C3037T C10448T C14408T G18803T A23403G C28473T GGG28881AAC A29890G AAAAA29899-

EPI_ISL_515569
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C6762T T12503C C14408T A23403G G25455T G25770T GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515570
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6762T T12503C C14408T A23403G G25455T G25770T GGG28881AAC C29721T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_515676
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G11447A C14408T C22675T A23403G G28077T GGG28881AAC G29332T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_515678
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002301/2020
 C241T C3037T C12115T T12503C C14408T C22712T A23403G A23534G G25770T GGG28881AAC C29721T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515684
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002308/2020
 C241T C3037T T12503C C14408T G20580T A23403G A23534G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515687
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1288T C3037T C4002T G10097A C13536T C14408T G14653T G17592T C19983T A23403G C23731T G24812T C26681T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515688
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002312/2020
 ATTAAAGGTTTATACC1- C241T C1426T C3037T T12503C C14408T A21466G A23403G GGG28881AAC A29221G C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515689
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002313/2020
 G174T C241T C2939A C3037T C9857T C13176T C14408T C17372T C18138T C18395T A23403G A23920G A26530G G27561T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_515691
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002315/2020
 ATTAAAGGTTTATACC1- C241T C3037T C5654T C14408T G17938A A20268G A23403G A24962C G26144A T29623C G29736T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_515693
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002317/2020
 ATTA1- C241T C3037T C5654T C14408T G17938A A20268G A23403G A24962C G26144A T29623C G29736T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_515694
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002318/2020
 ATTA1- C241T C3037T C6762T C9857T T12503C C14408T G21867T C21911T A23403G G25455T G25770T GGG28881AAC C29721T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_515696
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002320/2020
 ATTA1- C241T C3037T C14408T G17938A A20268G A23403G G26144A T29623C G29736T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_515697
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002321/2020
 ATT1- C241T C3037T A7064G G11083T C13059T C14408T A20255G C22675T A23403G C25517T C26681T T27384C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515698
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515700
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G11447A C14408T C22675T A23403G G28077T GGG28881AAC G29332T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515701
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002325/2020
 ATTA1- G210T C241T C3037T C6762T G7393T A9883G T12503C C14408T G17140T G20069T A23403G G23868T G25455T G25770T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515702
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002326/2020
 ATTA1- G210T C241T C3037T C6762T G7393T C11074T G11083T T12503C C14408T G17140T G20069T A23403G G23868T G25455T G25770T GGG28881AAC C29721T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515704
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002328/2020
 ATTAAAGG1- C241T C3037T A7064G G11083T C13059T C14408T A20255G C22675T A23403G C25517T C26681T T27384C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515705
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002329/2020
 AT1- C241T C3037T C14408T C22675T A23403G G28077T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_515706
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002331/2020
 ATTA1- C241T C3037T G11447A C14408T C22675T A23403G G28077T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515708
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- G210T C241T C3037T C6762T G7393T G11083T T12503C C14408T G17140T G20069T A23403G G25455T G25770T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515711
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002337/2020
 ATTAA1- C241T C3037T A4179G C14408T A23403G C28005T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515712
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G210T C241T C3037T C6762T G7393T G11083T T12503C C14408T G17140T G20069T A23403G G25455T G25770T GGG28881AAC C29721T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_515714
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002341/2020
 ATTAAAGGTTT1- C241T T1294C C3037T C5654T C14408T A23403G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515715
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T G17938A A20268G A23403G G26144A T29623C G29736T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515720
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T T8242C T8870C C11455T C14408T C21727T A23403G G24230A G24697T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515730
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6762T G8131T T12503C C14408T G20170A A23403G C24766T G25770T G28077T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515733
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002365/2020
 ATTAAAGGTT1- C241T C664T C3037T A7064G C14408T C22675T A23403G C25521T C26586T T27384C GGG28881AAC G29254T A29723G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515736
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002368/2020
 ATTAAAGGTTT1- C241T C3037T A3405G T12503C C14408T A23403G GGG28881AAC C29721T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_515737
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A G11083T C13536T C14408T C18747T A23403G C23731T G24038T GGG28881AAC G29425T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_515739
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C4002T C9866T G10097A C13536T G13762A C14408T C18747T A23403G C23731T G28178T GGG28881AAC G29425T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515743
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002377/2020
 AT1- C241T C920T C3037T C6762T T8521C G11083T T12503C C14408T G17140T T18006C A23403G G25455T G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515748
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002382/2020
 ATTAAAGGTTTA1- C241T C3037T C6762T T12503C C14408T C22570T A23403G G25455T G25770T GGG28881AAC G29227A C29721T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515751
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002385/2020
 ATTA1- C241T C3037T C6762T T12503C C14408T A23403G G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515753
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002387/2020
 ATT1- C241T C1427T C3037T T3049C C14408T C23059T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_515754
 2020-07-22 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002388/2020
 ATTAAAGGTTT1- C241T C3037T C5365T T12503C G14241T C14408T C16859T C23086T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_516436 MT928964
 2020-07-22 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6238C C14408T C18486T A20268G C21721T C21811T TTA21991- T22162C A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516439 MT928967
 2020-07-22 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G1957T C3037T C11916T C14408T A19314G A23403G A23586G G25563T G26918T ACGATCG29749- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516440 MT928968
 2020-07-22 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G1957T C3037T C11916T C14408T C22987T A23403G A23586G G25563T A26904G ACGATCG29749- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516650
 2020-07-22 2020-08-21
 Ecuador hCoV-19/Ecuador/USFQ-165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C1457T C8782T T9445C T17531C C17747T A17858G C18060T G18756T A24694T T28144C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517914 MT966237
 2020-07-22 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1024/2020
 ATTAAAGGTTTATAC1- C241T C1059T T1623C C3037T C5140T C5310T C7420T C10030T C10319T C14408T C16694T A23403G C24138T G25563T G27459T C27689T C27964T C28892T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_517915 MT966238
 2020-07-22 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1025/2020
 ATTAAAGGTTT1- C241T C2416T C3037T C14408T C16616T C21207T A23403G G25563T C26885T C27603T A28624G G28690T C28887T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_517916 MT966239
 2020-07-22 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1026/2020
 AT1- C241T C1059T C1385T G1738T G2086T C3037T G3242A C11916T C14408T A23403G C25267T G25563T G26634T C27046T C28087T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_517918 MT966241
 2020-07-22 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1028/2020
 ATTA1- C241T C1479A C3037T C14408T T22843C A23403G C25680T G27628A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518004
 2020-07-22 2020-08-25
 Singapore hCoV-19/Singapore/840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C615A G3250T C6310A C6312A C6968T G11083T C13730T C14177T A16441C C19524T C23185T C23929T C27925T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518005
 2020-07-22 2020-08-25
 Singapore hCoV-19/Singapore/841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C615A G3250T C6310A C6312A C6968T G11083T C13730T C14177T A16441C C19524T C23185T C23929T C27925T C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518064 MT971854
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518065 MT971855
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518077 MT971870
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6036/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26370T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518078 MT971871
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3114T T7540C T13472C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518117 MT973168
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6092/2020
 AT1- C241T A1163T C3037T T6199C T7540C C12513T C14408T G16647T C18555T C22480T G22992A G23401A A23403G TCTCTATCTTTA25707- GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518129 MT973180
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3564T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24933T T27957C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518131 MT973182
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518132 MT973183
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3738T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518134 MT973185
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518135 MT973186
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518136 MT973187
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T G2604T G3004T C3037T G3564T T7540C G11535T G13571T G14277T C14408T G16647T C18555T G22992A G23401A A23403G G24933T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518138 MT973189
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518140 MT973191
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518142 MT973193
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518143 MT973194
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3564T T7540C G11083T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC T28912C C28961T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518144 MT973195
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3564T G7038K C7162T T7540C G11535T C14408T G16647T C16952T C18555T G22992A G23401A A23403G G24933T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518145 MT973196
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T G2604T G3004T C3037T G3564T T7540C G11535T G14277T C14408T G16647T G16787T G17096T C18555T T22825C G22992A G23401A A23403G G24933T G26526T GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_518146 MT973197
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T G2036T G2604T G3004T C3037T G3564T T7540C G11535T G13571T G14277T C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G G24933T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518147 MT973198
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_518149 MT973200
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G18973T T20157C C21005T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518150 MT973201
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6139/2020
 AT1- A12M C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518151 MT973202
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518152 MT973203
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4456T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518153 MT973204
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4456T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518154 MT973205
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1480T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC G29477T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_518155 MT973206
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6144/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518157 MT973208
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T A6248G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518158 MT973209
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G18859T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518159 MT973210
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6148/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1163T C3037T C4456T T7540C C14408T G16647T C18555T T19135A G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518160 MT973211
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T C6033T T7540C A14355G C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A G27666A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518162 MT973213
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22825C G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518163 MT973214
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C843T A1163T C3037T T7540C C14408T G16647T G17370A C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518165 MT973216
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518166 MT973217
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G14743A G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518167 MT973218
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518169 MT973220
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21897T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518177 MT973228
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3564T T7540C G8678R G11535T C14408T G16647T C18555T G22992A G23401A A23403G G24933T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518179 MT973230
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6174/2020
 ATTAAAGGTTTAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518180 MT973231
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518181 MT973232
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T G17370A C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_518182 MT973233
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6177/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T T15888C G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518183 MT973234
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GTT26155- GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518184 MT973235
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C T8158C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518185 MT973236
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518186 MT973237
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6181/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518188 MT973239
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T G2604T C3037T G3564T T7540C G11535T G13571T G14277T C14408T G16647T C18555T G22992A G23401A A23403G G24933T GGG28881AAC G28917A GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518193 MT973244
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518194 MT973245
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518226 MT973278
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3564T T4303C T7540C G11535T G14277T C14408T G16647T C18555T G22992A G23401A A23403G G24933T C26198T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518227 MT973279
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C66T C241T A1163T C3037T G3564T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G G24933T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518228 MT973280
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3564T T7540C T8431C G8696T C12781T C14408T G16647T C18555T G22992A G23401A A23403G C23635T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518235 MT971948
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6241/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518271 MT971914
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C A14355G C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518276 MT971919
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C4999T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518289 MT971932
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6301/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518293 MT971936
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518316 MT971943
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518323 MT971951
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G526T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_518328 MT971960
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518335 MT971967
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C25889T GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_518337 MT971969
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C A14355G C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_518352 MT971538
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27881T T27957C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518355 MT971541
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518356 MT971542
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4402A T7540C C14408T C15738T G16647T G17443T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518358 MT971544
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518376 MT971562
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T3741C T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518552 MT971488
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G T26680C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518622 MT971746
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G374A A1163T C3037T T7540C C14408T G16647T C18555T G19009T G22992A G23258A G23401A A23403G T25356G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518624 MT971748
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23413T GGG28881AAC T29680C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518636 MT971760
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T C14616T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518638 MT971762
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518639 MT971763
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518643 MT971573
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3411T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518658 MT971611
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5867/2020
 ATTAAAGGTTTA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G G25494T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518659 MT971612
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518681 MT971639
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G16647T C17649T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518682 MT971640
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_518683 MT971641
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G7393T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518684 MT971642
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518685 MT971643
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518691 MT971649
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_518694 MT971652
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518725 MT971602
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5947/2020
 ATTA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518728 MT971605
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518729 MT971606
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5953/2020
 ATTAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_518732 MT971609
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T A1163T C3037T T7168C T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_519951 MT971182
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G11083T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520049 MT971234
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520050 MT971235
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520215 MT971489
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC

EPI_ISL_520216 MT971490
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5467/2020
 ATTAAAGGTTTATACC1- C241T A1163T C2488T C3037T T7540C T7804C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC

EPI_ISL_520217 MT971491
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520225 MT971502
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520240 MT971517
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_520241 MT971518
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC

EPI_ISL_521212 MT972028
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3411T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521239 MT972049
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C A14355G C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A G27666A GGG28881AAC

EPI_ISL_521248 MT972059
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C13501T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC C29518T

EPI_ISL_521264 MT972076
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521266 MT972078
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521267 MT972079
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_521268 MT972080
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21774T T22825C G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_521269 MT972081
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_521302 MT971374
 2020-07-22 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522542
 2020-07-22 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2763/2020
 ATTAAAGGTTTATACC1- C241T T586C C1059T C3037T C11916T C14408T C16650T A20675T A21782G A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAA29888-

EPI_ISL_522544
 2020-07-22 2020-08-26
 South Korea hCoV-19/South Korea/KCDC2765/2020
 C241T C1059T C3037T A3057G A11895T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_523733
 2020-07-22 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C622T C3037T G4657T T5182C C11758T C13059T C14408T C15324T G16846T C16887T C18744T A23403G C25075T C25904T A29052T C29733T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523740
 2020-07-22 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T G12191T C14408T T16479C A23403G C25587T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523744
 2020-07-22 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T G12191T C14408T T16479C A23403G C25587T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525989
 2020-07-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C12754T A14012T C14408T A23403G G25563T G28027T G29742T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_525990
 2020-07-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G293A C3037T C3487T C11308T C14408T T15264C C16332T C19170T A23403G C25791T C28854T C29614T

EPI_ISL_525991
 2020-07-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1643/2020
 ATTA1- C241T A2728G C3037T C3141T T3321G C14408T G19525T A20268G A23403G T24076C G26262A C28854T

EPI_ISL_525992
 2020-07-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1645/2020
 ATTAA1- C241T G293A C3037T A3375C C3487T C11308T C14408T T15264C C16332T G16935T C19170T A23403G C25791T C28854T C29614T

EPI_ISL_525993
 2020-07-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1514T C3037T C8078T A8998C C14408T G19072T A23403G G25563T A28870T

EPI_ISL_525994
 2020-07-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8818T C14408T C15952T C16293T G18337T G20980A C21789T A23403G

EPI_ISL_525995
 2020-07-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1655/2020
 A1- C241T C1387T T1978C C3037T G8184A C14408T C15933T G16968T T19839C A23403G G28845T GGG28881AAC

EPI_ISL_525996
 2020-07-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13536T C14408T C15933T G16968T C17304T T19839C A23403G GGG28881AAC

EPI_ISL_525998
 2020-07-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1673/2020
 ATTAA1- C241T C3037T T3949C T4651G C7768T C10228T T10480C C11575T C14408T A20268G A20761G G21850T G22289T A23403G T27484C C27600T C27945T C28854T

EPI_ISL_525999
 2020-07-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1675/2020
 ATTA1- C241T C3037T C14408T G19542T A20268G A23403G G24328T C28854T C29274A

EPI_ISL_526001
 2020-07-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T G27074T C27964T C28472T C28869T

EPI_ISL_526002
 2020-07-22 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19542T A20268G A23403G G24328T C28854T C29274A

EPI_ISL_526086
 2020-07-22 2020-09-01
 United States hCoV-19/USA/TX-OHSU-1633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1927C C3037T C4900T T9289C C10319T C14408T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T

EPI_ISL_526105
 2020-07-22 2020-09-01
 United States hCoV-19/USA/WA-OHSU-1647/2020
 ATTAAAGGTTTA1- C241T C1684T C3037T G4631A C6539T A12829G C14408T G18898T A23403G A25315G GGG28881AAC

EPI_ISL_526330
 2020-07-22 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97DCC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526331
 2020-07-22 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97DCD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T G27147T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526332
 2020-07-22 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97DD4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T G16700T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526333
 2020-07-22 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97DDB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T G16700T C21234T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526334
 2020-07-22 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97DE0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526386
 2020-07-22 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A9713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C313T C1912T C3037T G4180T T10453Y G11083T C11195T C14408T A23403G A25003G A25596C GGG28881AAC

EPI_ISL_526387
 2020-07-22 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A9722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C1912T C3037T G4180T T10453Y G11083T C11195T C14408T A23403G A25003G A25596C GGG28881AAC C29870A

EPI_ISL_526388
 2020-07-22 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A9731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C1912T C3037T G4180T T10453Y G11083T C11195T C14408T A23403G A25003G A25596C GGG28881AAC C29870A

EPI_ISL_526701
 2020-07-22 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2767/2020
 A1- C241T C1059T C3037T A3057G A11895T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_526702
 2020-07-22 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2768/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_526703
 2020-07-22 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2769/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T G17325T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_526704
 2020-07-22 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2770/2020
 ATTAAAGG1- C241T C1059T C3037T C11916T C12357T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_526705
 2020-07-22 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2771/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_526706
 2020-07-22 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2772/2020
 ATTAAAGG1- C241T C1059T C3037T A3057G G10106T C11916T C14408T C16650T A20675T C20703T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_527598 MT958230
 2020-07-22 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C11575T C14408T A18773G C19029T A20268G T21808A A23403G G28373T C28854T G29747A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_527599 MT958231
 2020-07-22 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1534/2020
 ATT1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_527600 MT958232
 2020-07-22 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_528511
 2020-07-22 2020-09-07
 United States hCoV-19/USA/AK-PHL1882/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A538G C1059T C1437T C3037T T4324G T9107C G10262T C14408T C23029T A23403G C25511T G25563T T26543A A28254G C29358A C29466T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530252
 2020-07-22 2020-09-11
 Australia hCoV-19/Australia/QLD992/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C6312A A6693G G11083T C13730T C23929T C27998T G28178T C28311T

EPI_ISL_530253
 2020-07-22 2020-09-11
 Australia hCoV-19/Australia/QLD993/2020/P1
 C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_532667
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8ACBB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C8281T G8353A C8950T G10097A C13536T C14408T G19009T C22350T A23403G C23731T ACGTGCCAG27624- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532677
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8A6BD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16374C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532691
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/England/QEUH-880E33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C2226Y C3037T C14408T C18714T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532693
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-8ADD60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C9442T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532716
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8AE7E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T G13348T C14408T G14866A T17343G C21811T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532719
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8AE3B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T G13348T C14408T G14866A T17343G C21811T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532761
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-8AED32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2638T C3037T C9442T C14408T C16887Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532788
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-8AD2BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1581C C3037T C4931T C7006T A14004G C14408T T19893C A23403G G25981T G26526T GGG28881AAC G29628T C29738T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532806
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8AC305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C556Y A2501G C3037T C6395T G10565C G11804A A12410G C14408T A18366G C18788T T19839C T21093C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532842
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-7DEE91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532890
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7B73CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C401T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532904
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7B810D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532917
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7BFF75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532923
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7B91A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1470A T1910G G2477A C3037T T7198C C8311T G10097A A10323G C11653T A11991G T12184C C14408T C16954T A17615G G18859T T20482G G22638A A23403G C23731T C25000T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532941
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7B903C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532947
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7E5CBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T G2086K C3037T G3483T G10097A T10992C C11001T C14408T C15280Y A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532954
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7B8F21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7173T C8991T C11289T C14408T T15051C A20255G G21255C A23403G G28166A GGG28881AAC G29090T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532961
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7B655E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC G29688K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532963
 2020-07-22 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7B8F9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T A23403G A27400G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539884
 2020-07-22 2020-09-21
 Sweden hCoV-19/Sweden/20-52440/2020
 C241T GGTCTT1598- C3037T G3896T C14352T C14408T C16887T C18647T A23403G GGG28881AAC

EPI_ISL_541175
 2020-07-22 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1202/2020
 A1- C241T C1059T C1625T C3037T A6423G C10078T C10319T C13329T C14408T G16710T G20176T A23403G T24376C A25121T G25563T C25782T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_541176
 2020-07-22 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1203/2020
 A1- C241T C3037T C3096T C14408T T18260G A21625G G22468T A23403G A25505C G28857T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_541323
 2020-07-22 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T G1820A C3037T C4423T G11083T C12459T A13815G C14408T C14425T G15327T T17859C C19245T G21608T A23403G C25465T G25563T C28311T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_542038
 2020-07-22 2020-09-23
 United States hCoV-19/USA/NMDOH-2020239972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C4423T A6105G T8041C C11967T C14408T G22225T A23403G G25563T C28005T C29870M

EPI_ISL_546436
 2020-07-22 2020-09-24
 Czech Republic hCoV-19/Czech Republic/NRL-7950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G17014T G17259T C18086T G23236T A23403G G25429T GGG28881AAC TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_547434
 2020-07-22 2020-09-24
 United Kingdom hCoV-19/Gibraltar/203160594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C106T C241T C1063T C3037T GT5743SY G11851T C12053T C14408T C18828T T19452W C22680T A23403G A24369T G25088T GGG28881AAC AAAAA29899-

EPI_ISL_547437
 2020-07-22 2020-09-24
 United Kingdom hCoV-19/Gibraltar/203360721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C106T C241T C1063T C3037T G11851T C12053T C14408T C18828T C22680T A23403G A24369T G25088T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_547636
 2020-07-22 2020-09-24
 United States hCoV-19/USA/WI-GMF-11927/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T G2035T C3037T T3532C T9022C C11956T C12025T C14408T T19839C AA21550MW A23403G C23707T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547637
 2020-07-22 2020-09-24
 United States hCoV-19/USA/WI-GMF-11949/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T A3344G C3773T C7764T C9521T T14191C C14408T C16260T A23403G A24253T G24386T G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548373
 2020-07-22 2020-09-26
 United States hCoV-19/USA/CA-CZB-3739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C3037T C5144T C12525T C14408T A20268G A23403G C28854T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_548474
 2020-07-22 2020-09-26
 United States hCoV-19/USA/CA-CZB-3683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCC1- C241T G1021R C3037T C4582T G6404T C13443T C14408T C19859Y A20268G A23403G T25123C G25654K C27925T G28378T G28881T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_549093
 2020-07-22 2020-09-28
 Norway hCoV-19/Norway/2966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549097
 2020-07-22 2020-09-28
 Norway hCoV-19/Norway/2970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549102
 2020-07-22 2020-09-28
 Norway hCoV-19/Norway/2994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4035C C5002T GATATGGTT11267- C14408T G17721T A23403G A23851G C26447T GGG28881AAC C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549109
 2020-07-22 2020-09-28
 Norway hCoV-19/Norway/2984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549114
 2020-07-22 2020-09-28
 Norway hCoV-19/Norway/2989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4206T G9130T C9712T C14408T C16111T C21642T A23403G T27319C C28054T G28487A C28868T GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549116
 2020-07-22 2020-09-28
 Norway hCoV-19/Norway/2991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4035C C5002T GATATGGTT11267- C14408T G17721T A23403G A23851G C26447T GGG28881AAC C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550442
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-9777E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556522
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948E36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C3037T C6990T C14408T C18877T C19402T C21767T A23403G G25563T C25710T C26735T C28905T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556564
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-946FDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10202T G11447A C14408T C17135T C21648T A23403G C28312T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556567
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949E08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C853T C3037T C5482T C14408T G17944T G18186T C18747T A22182G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556657
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94BE51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556771
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94971C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7638A C8683T C13335T C14408T A20268G C22088T A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556830
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9414FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T G3340C C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556831
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941A39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556832
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941D4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C874T C3037T G4444T T6699C C8640T C10635T C14408T C17746T A23403G G23868T G24872A GGG28881AAC C29215T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556834
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94169F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C14408T T20653C C21637T A23403G G24368T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556837
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9417AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C14408T A23403G G25537R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556838
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9418C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556847
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9415B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20268G G22335T C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556848
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941C60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556853
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C14408T G21119K A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556854
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9412F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T CG29750- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556864
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94286B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556888
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-942009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A T25392C C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556891
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941FD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556895
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-943017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T T16401C G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556909
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941F3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C11379T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556915
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-947F16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1758T C3037T G4510A G5023T C14408T G15438T A23403G G25785T GGG28881AAC G29260T G29751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556923
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-947A15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556926
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/Wales/CAMC-94771E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T G21624T A23403G G27877T A28523G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556928
 2020-07-22 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C3037T C6990T C14408T C18877T C19402T C21767T A23403G G25563T C25710T C26735T C28905T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560316
 2020-07-22 2020-09-28
 Russia hCoV-19/Russia/SVE-RII-MH210S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A3069T C14408T G18905A A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_561139
 2020-07-22 2020-09-30
 Gambia hCoV-19/Gambia/GC192756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561140
 2020-07-22 2020-09-30
 Gambia hCoV-19/Gambia/GC192772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C12469T C14408T A23403G C27765T GGG28881AAC C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561141
 2020-07-22 2020-09-30
 Gambia hCoV-19/Gambia/GC192778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C12469T C14408T A23403G C27765T C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561142
 2020-07-22 2020-09-30
 Gambia hCoV-19/Gambia/GC192781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T C16260T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561143
 2020-07-22 2020-09-30
 Gambia hCoV-19/Gambia/GC192782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T A2745G C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561144
 2020-07-22 2020-09-30
 Gambia hCoV-19/Gambia/GC192786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T809C C1392T C3037T C3373A C9561T C14408T G19006T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561145
 2020-07-22 2020-09-30
 Gambia hCoV-19/Gambia/GC192789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3547C C14120T C14408T C15324T T17364C A23403G T25467C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561146
 2020-07-22 2020-09-30
 Gambia hCoV-19/Gambia/GC192809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T A2745G C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561148
 2020-07-22 2020-09-30
 Gambia hCoV-19/Gambia/GC192812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562754
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC6709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A6946R T7018W T7057Y T7540C C14408T G16647T C18555T G22992A G23401A A23403G A25048R GGG28881AAC C28961T TCACCGAGGCCACGCG29729- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562759
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC9940/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A A23004R A23129W G23401A A23403G TAGGGGAACTTCTCC28879- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563428
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563434
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563438
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_563440
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C3622Y T7540C C14408T G16647T C18555T C22373S T22387Y G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563448
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A6248G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563452
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563458
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19263T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563460
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C203Y C241T C832Y A1163T C3037T C4090Y T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC A29444R G29734S GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563461
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T T1770Y C3037T T7540C C14408T G15594T G16647T C16859Y C18555T G22992A G23401A A23403G GGG28881AAC C29095Y CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563462
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C44H C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563464
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A3928R T7540C C14408T G16647T C18555T C22987T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563470
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T24448W C25513T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563472
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563477
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25996T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563478
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G5558A T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29838M TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563481
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563484
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G12769K C14408T G15594T G16647T C18555T A22396R G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563485
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563489
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6033T T7540C C10456T A14355G C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A G27637R G27666A GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563490
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC11761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C66T C241T A1163T C3037T T7540C C13274Y C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563903
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC13971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T A1677R C3037T C6033T T7540C A14355G C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A G27666A GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563904
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC13975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564120
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC6894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6033T T7540C C11902T C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564121
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC6895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6033T T7540C A14355G C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564123
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC6898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564131
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC6909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T GT5743SY GG5765RS T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564144
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC6924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T T18429C C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564146
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC6927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564147
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC6928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564436
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC7477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_564453
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC7504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A6248G T7540C C14408T G16647T C18555T G22273R C22480T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564503
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC7567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C T12580C T12628C T12724C T12883C T12904C T12934C T13141C T13150C T13324C T13336C T13411C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564505
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC7570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564506
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC7571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564507
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC7573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25513T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564514
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC7586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- T49K C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A C25499Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564529
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC7613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C952Y A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T25732Y G26526T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564534
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC7618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T C3738T T7540C C14408T G16647T C18555T C19170T G21800T G22992A G23401A A23403G C26571T GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_564545
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC7640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564682
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC7828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C9967T C14408T G16647T C18555T C19983T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565227
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC8840/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T T7540C C14408T G16647T A17929R C18555T G22992A G23401A A23403G G26526T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565230
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC8843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T G2324T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565240
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC8855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C19884Y C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565247
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC8866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565257
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC8879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C12473T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565268
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC8894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G28001K GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565272
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC8900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_565273
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC8902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A6248G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565274
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC8903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565275
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC8904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565282
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC8916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565716
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC9787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565717
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC9788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T G17370A C18555T G22992A G23401A A23403G T28245K GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565724
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC9800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6726T T7540C C9661T C14408T G15594T G16647T C18555T T20512Y G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565788
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC9937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565789
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC9938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_565796
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC9947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C17304T C18555T G22992A G23401A A23403G A26162G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565800
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC9952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565804
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC9958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C6033T T7540C A14355G C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565812
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC9968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T T1432C C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565818
 2020-07-22 2020-09-30
 Australia hCoV-19/Australia/VIC9975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T4087G T7540C T10520C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29240A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568568
 2020-07-22 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-013/2020
 ATTAAAGGTT1- C241T C313T C3037T T4346C C9286T C10376T C14408T C14708T T22020C A23403G C28725T GGG28881AAC G29692T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_568569
 2020-07-22 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-014/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C313T C3037T T4346C G6056T T8076C C9286T C10376T C14408T C14708T A23403G C28725T GGG28881AAC G29692T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_568612
 2020-07-22 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C1059T C3037T G3794A C5102T G6052A G7295T C10319T C14408T G19872T A23403G G25563T G25855T C27964T G29254T G29474T G29764T GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_569020
 2020-07-22 2020-10-02
 France hCoV-19/France/IHU-0973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4582T C14408T G14653T A19443G A20742C A23403G GGG28881AAC AAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29796-

EPI_ISL_569021
 2020-07-22 2020-10-02
 France hCoV-19/France/IHU-0974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4582T G4854A C14408T G14653T A19443G A20742C A23403G G24712T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569022
 2020-07-22 2020-10-02
 France hCoV-19/France/IHU-0975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3602T C10582T C14408T G14428T A23403G G25552C G25563T G25621T C27476T C27804T C28830A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MW023436
 2020-07-22 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1202/2020
 A1- C241T C1059T C1625T C3037T A6423G C10078T C10319T C13329T C14408T G16710T G20176T A23403G T24376C A25121T G25563T C25782T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MW023437
 2020-07-22 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1203/2020
 A1- C241T C3037T C3096T C14408T T18260G A21625G G22468T A23403G A25505C G28857T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MW023584
 2020-07-22 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T G1820A C3037T C4423T G11083T C12459T A13815G C14408T C14425T G15327T T17859C C19245T G21608T A23403G C25465T G25563T C28311T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_510779 LR882250
 2020-07-23 2020-08-07
 Switzerland 210038
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C274T C313T C3037T T8082C C9286T C14408T C19763T A23403G C28732T GGG28881AAC G29260T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510784 LR882264
 2020-07-23 2020-08-07
 Switzerland 210045
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A3904G C10833T C14408T C15324T A16210W C22458T A23403G G28747T G28917T G29543T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510807 LR882321
 2020-07-23 2020-08-07
 Switzerland 210082
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T3022Y C3037T A3098R A3904G T6996K C10833T C14408T C15324T C22458T A23403G G24368K G27572T G28747T G28917T G29543T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510808 LR882318
 2020-07-23 2020-08-07
 Switzerland 210083
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3144D A3904G C10833T C14408T C15324T T17675Y C22458T A23403G G28747T G28917T G29543T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_510809 LR882324
 2020-07-23 2020-08-07
 Switzerland 210084
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2570T C3037T C6578T G10631A C12559T C14408T C15324T G16900A T21075W A23403G C27765T C28893T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_511989 LR882222
 2020-07-23 2020-08-10
 Switzerland 210044
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A572R A2932R C3037T T3556Y T3607Y C3738T C5400Y C5477M G9130T G9999R T10076W C13665M C14408T C16111T A16210W A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512092
 2020-07-23 2020-08-10
 Ireland hCoV-19/Ireland/71IRL74709/20
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T C6286T G11132T C13620T C14408T A14578G G21255C C22227T A23403G G23522C G25049T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512093
 2020-07-23 2020-08-10
 Ireland hCoV-19/Ireland/71IRL77106/20
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3045T A8763G A10323G C14408T T15507C C18877T C22444T A23403G G25563T C26735T C28854T G29239A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512094
 2020-07-23 2020-08-10
 Ireland hCoV-19/Ireland/71IRL79618/20
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1960T C3037T T8761A G10097A G13993T C14408T G17122T G18960T A23403G G24757T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512519
 2020-07-23 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16982A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512536
 2020-07-23 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169936/2020
 ATTAAAGGTTTATACC1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_512544
 2020-07-23 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1699BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512651
 2020-07-23 2020-08-11
 Latvia hCoV-19/Latvia/096/2020
 C241T C3037T T7076A C14408T C18747T A20268G G22567A A23403G T24076C C28854T

EPI_ISL_512833
 2020-07-23 2020-08-12
 Singapore hCoV-19/Singapore/797/2020
 ATTAAAGG1- G1821T C6310A C6312A G7560A A9419G G11083T C13730T G16089A A16464G C19524T T19530G G21974C C23929T C27323T C28311T AAAAAAAAAAAA29892-

EPI_ISL_514305
 2020-07-23 2020-08-16
 Israel hCoV-19/Israel/CVL-n26496/2020
 AT1- C241T C313T C1528T C2836T C3037T G4510A C8389T C8905T C14408T G15438T G18651T A23125T G23149A A23403G G25617T G25785T C25976A G28851T GGG28881AAC

EPI_ISL_514441
 2020-07-23 2020-08-17
 Bangladesh hCoV-19/Bangladesh/NGRI_NSTU_05/2020
 -4TTAAAGTTCGTTTAGAGAACAGATCTACAAGAGATCG -7GTTGGTT C241T C2836T C3037T T3836A C12974T T13314C C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29095T G29773T -29904AAAA

EPI_ISL_515668
 2020-07-23 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002290/2020
 ATTA1- C241T C3037T C6762T T12503C C14408T G19009T A23403G G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515671
 2020-07-23 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T T8914C G10097A C13536T C14408T C17541T C17977T C19586T A23403G C23731T C27476T C28253T GGG28881AAC G29425T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515672
 2020-07-23 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G101A C241T C3037T C6762T T12503C C14408T A23403G G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515679
 2020-07-23 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002302/2020
 ATT1- C241T C3037T C6762T T12503C C14408T G19009T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515680
 2020-07-23 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C4002T G10097A C13536T C14408T C17541T C17977T C18747T C19586T A23403G C23731T C27476T C28253T GGG28881AAC G29425T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515681
 2020-07-23 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002304/2020
 ATT1- C241T C3037T C4002T G10097A C13536T C14408T C17541T C17977T C18747T C19586T A23403G C23731T C27476T C28253T GGG28881AAC G29425T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515683
 2020-07-23 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002307/2020
 ATTAAAGGTT1- C241T C2040T C3037T C6762T A9439G T12503C C14408T C20115T A23403G G25770T GGG28881AAC C29721T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515699
 2020-07-23 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G5332A T12503C C14408T A20055G A23403G G25770T GGG28881AAC C29721T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_515707
 2020-07-23 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T T12503C C13051T C14408T C21575T A23403G G26727T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515709
 2020-07-23 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002335/2020
 ATTAAAGGTTTA1- C241T C3037T C14408T A23403G GGG28881AAC A29767C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515710
 2020-07-23 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002336/2020
 AT1- C241T C3037T C4002T C9733T G10097A C13536T C14408T C18747T A23403G C23731T G25218T C28253T A28370G GGG28881AAC G29425T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515716
 2020-07-23 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002343/2020
 ATTA1- C241T C3037T T12503C C14408T C16490T T22822C A23403G G25249T A25495G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515719
 2020-07-23 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G8687A G11083T T12503C C14408T A23403G A23534G G25770T C27849T GGG28881AAC C29721T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_516529 MT929054
 2020-07-23 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6627T G11083T C11379T C12921T C14408T T15354C C18877T A21852C A23403G G25563T C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516546 MT929070
 2020-07-23 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C T1090C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516549 MT929073
 2020-07-23 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517373
 2020-07-23 2020-08-24
 United Kingdom hCoV-19/England/LIVE-A9F1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C1190T G2035T C3037T G8102T C14408T C18744T A18978R A23403G G25563T A29391G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517920 MT966243
 2020-07-23 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10319T C14408T G16710T G20176T A23403G A25121T G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_517921 MT966244
 2020-07-23 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1031/2020
 AT1- C241T C3037T T14382C C14408T T22843C A23403G C25452T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_517922 MT966245
 2020-07-23 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1032/2020
 ATTA1- C241T C3037T T11675C C14408T T22843C A23403G C25452T C26010T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_517923 MT966246
 2020-07-23 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1033/2020
 A1- C241T C3037T T11675C C14408T T22843C A23403G C25452T C26010T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_517924 MT966247
 2020-07-23 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1034/2020
 AT1- C241T C920T C1059T C3037T G6036T G6622T C10188T C12473T C12741A C14408T A18706G T22220C A23403G T24982C G25563T G26814T C27964T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_517925 MT966248
 2020-07-23 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1035/2020
 ATTAAAGGTT1- C241T C313T C3037T C14408T A23403G C26895T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_517926 MT966249
 2020-07-23 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1036/2020
 ATTAAAGGTTT1- C241T C1059T C3037T G7393T C10188T C14408T C17745T A23403G T24982C G25563T A26231C T27531C C27964T G28077C C29149T AAAAAAAAAAAAAAA29889-

EPI_ISL_518068 MT971858
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T C3511T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518069 MT971859
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518070 MT971860
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518093 MT971867
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T21773C G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518148 MT973199
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G28917A AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_518171 MT973222
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518174 MT973225
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6168/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518175 MT973226
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518195 MT973246
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518196 MT973247
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6194/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518200 MT973251
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC C28932T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518201 MT973252
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518202 MT973253
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_518203 MT973254
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6201/2020
 ATTAAAGGTTTATACCTTCCC1- C241T G558T A1163T C3037T G3564T C5144T T7540C G11535T G14277T C14408T G16647T C18555T G22992A G23401A A23403G G24933T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518204 MT973255
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G557T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518205 MT973256
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3564T T7540C G11535T G14241T C14408T G16647T C18555T C19586T G22992A G23401A A23403G G24933T GGG28881AAC C29546T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518206 MT973257
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21774T T22825C G22992A G23401A A23403G G26526T GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_518207 MT973258
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3564T T7540C G14241T C14408T G16647T C18555T C19586T G22992A G23401A A23403G G24933T GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518208 MT973259
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G C28093T GGG28881AAC C29546T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518211 MT973263
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6213/2020
 ATTAAAGGTTTATACCTTC1- C241T A1163T C2488T C3037T G3564T T7540C G8790T G11535T G13571T G14277T C14408T G16647T G17848T C18555T C22480T G22992A G23401A A23403G G24933T T27957C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518213 MT973265
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T G3564T T7540C G8790T C14408T G16647T C18555T G22992A G23401A A23403G G24933T C28121T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518214 MT973266
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T G3564T T7540C G11535T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24933T C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518215 MT973267
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A1163T C3037T G3114T G3564T T7540C C14408T C15019T G16647T C18555T C22480T G22992A G23401A A23403G G24933T C27059T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_518217 MT973269
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518222 MT973274
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3564T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G24933T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518224 MT973276
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_518244 MT973260
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3564T T7540C G14241T C14408T G16647T C18555T C19586T G22992A G23401A A23403G G24933T GGG28881AAC C29546T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518272 MT971915
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518273 MT971916
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518274 MT971917
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518287 MT971930
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6299/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518294 MT971895
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C24852T T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518295 MT971896
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518296 MT971897
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518297 MT971898
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518299 MT971900
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518300 MT971901
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T8431C C14408T G16647T C18555T G22992A G23401A A23403G C23635T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518301 MT971902
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518312 MT971938
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T A3954C T7540C C14408T G16647T C18555T G22335T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518314 MT971940
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2788T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26326T GGG28881AAC G29736T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518321 MT971949
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518325 MT971953
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518660 MT971613
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518730 MT971607
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518731 MT971608
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518774 MT971830
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T C4276T C6968T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518775 MT971831
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAA1- C241T A1163T C2227T C3037T G3259T T7540C C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G C28728T GGG28881AAC AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_518776 MT971832
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518777 MT971833
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T G28845T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_518778 MT971834
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1267T T2391C C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518779 MT971835
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518780 MT971836
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518782 MT971838
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518783 MT971839
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C10252T A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518785 MT971841
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G G28539A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_518786 MT971842
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518787 MT971843
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521166 MT971982
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521167 MT971983
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521168 MT971984
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521170 MT971986
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521171 MT971987
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521185 MT972001
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521193 MT972009
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521194 MT972010
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521198 MT972014
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T C22482T G22992A G23401A A23403G C27005T GGG28881AAC

EPI_ISL_521199 MT972015
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521200 MT972016
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T G3114T C6040T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521201 MT972017
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521207 MT972023
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6415/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521208 MT972024
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6416/2020
 ATT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521210 MT972026
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521211 MT972027
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC

EPI_ISL_521213 MT972029
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521214 MT972030
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521228 MT972039
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521229 MT972040
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521231 MT972042
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521234 MT972044
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC

EPI_ISL_521235 MT972045
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15714T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC

EPI_ISL_521236 MT972046
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521237 MT972047
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521238 MT972048
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521240 MT972050
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC

EPI_ISL_521241 MT972051
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC

EPI_ISL_521242 MT972052
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521243 MT972053
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2146T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521244 MT972054
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521247 MT972058
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521251 MT972062
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521252 MT972063
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521253 MT972064
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521254 MT972065
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C G9190T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521255 MT972066
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521256 MT972067
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521257 MT972068
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25665T GGG28881AAC

EPI_ISL_521258 MT972069
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521259 MT972070
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521293 MT971492
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2522G C3037T C6145T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521294 MT971493
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6524/2020
 ATTAAAGGTTTATACC1- A31M C241T A1163T A2522G C3037T C6145T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522821
 2020-07-23 2020-08-26
 United States hCoV-19/USA/VA-DCLS-1154/2020
 AT1- C241T T511C C1059T C2143T C3037T A5560T C5892T C8092T C10319T A10724G C13225T C14408T C19170T C22120T A23403G A23474G C24378T G25563T C27964T A29677C G29862S AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_522822
 2020-07-23 2020-08-26
 United States hCoV-19/USA/VA-DCLS-1155/2020
 ATTAAAGGTTTA1- C241T T511C C1059T C2143T C3037T A5560T C5892T C8092T C10319T A10724G C13225T C14408T C19170T C22120T A23403G A23474G C24378T G25563T C27964T A29677C

EPI_ISL_522823
 2020-07-23 2020-08-26
 United States hCoV-19/USA/VA-DCLS-1156/2020
 ATTA1- C241T T511C C1059T C2143T C3037T A5560T C8092T C10319T A10724G G12070T C13225T C14408T C19170T C22120T A23403G A23474G C24378T G25563T C27964T A29677C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_523736
 2020-07-23 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T G12191T C14408T T16479C A23403G C25587T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523738
 2020-07-23 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T G12191T C14408T T16479C A23403G C25587T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523739
 2020-07-23 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T G12191T C14408T T16479C A23403G C25587T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523741
 2020-07-23 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T G12191T C14408T T16479C A23403G C25587T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523742
 2020-07-23 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T G12191T C14408T T16479C A23403G C25587T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523745
 2020-07-23 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T G12191T C14408T T16479C A23403G C25587T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525203 MT940523
 2020-07-23 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C10702T C13740A C14408T A23403G G25563T C25658T G29179T C29870A

EPI_ISL_525204 MT940524
 2020-07-23 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1177/2020
 ATTA1- C241T C1059T C3037T C10702T C13740A C14408T A23403G G25563T C25658T G29179T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_525205 MT940525
 2020-07-23 2020-08-28
 United States SARS-CoV-2/human/USA/VA-DCLS-1178/2020
 ATTAAAGG1- C241T C1059T C3037T C10702T C12933T C13740A C14408T A23403G G25563T C25658T ATT28065- G29179T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_526005
 2020-07-23 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C815T C3037T C3411T T10795C C13138T C14408T C18452T A23403G G25437T GGG28881AAC AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_526007
 2020-07-23 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G598T C3037T C5835T C6936T T11142C C14408T T16521C T19839C A23403G A23756G C25487T GGG28881AAC C29421T G29751T

EPI_ISL_526008
 2020-07-23 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1703/2020
 A1- C241T T833C C1059T C3037T C8389T C8650A G9705T G11521A C13138T T13725C C14408T T19284A A23403G C25463T G25563T C27964T G28899A C29025T G29260T

EPI_ISL_526009
 2020-07-23 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G3004T C3037T C4633T C10605T C14178T C14408T T14643C A20268G C22482T A23403G G23675C C28854T

EPI_ISL_526010
 2020-07-23 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4778G C11824T A13169G C14408T A18259G G18397A A20268G A23403G C28854T C28887T

EPI_ISL_526011
 2020-07-23 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4778G C11824T A13169G C14408T A18259G G18397A A20268G A23403G C28854T C28887T

EPI_ISL_526368
 2020-07-23 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A935B/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1884Y G2183R C3037T G6717A A9433T T9668C G10265A C14408T A19650G A23403G GGG28881AAC C29774T C29870A

EPI_ISL_526377
 2020-07-23 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A94EF/2020
 ATTAAAGGTT1- C241T C1059T C3037T C3743T C7528T C14408T A18751G C19017T A23403G G25563T C29585T C29870A

EPI_ISL_526395
 2020-07-23 2020-09-01
 United Kingdom hCoV-19/England/MILK-9772C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526707
 2020-07-23 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2773/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C11916T C12357T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_526708
 2020-07-23 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2774/2020
 ATTAAAGGTTT1- C241T T2058A A2869G C3037T C12115T A13712G C14408T C21306T A23403G GGG28881ACC C29095T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_526723
 2020-07-23 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2789/2020
 ATTAAAGGTTTATAC1- C241T T2058A A2869G C3037T C12084T C12115T A13712G C14408T C21306T A23403G C25276A C29095T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_527656
 2020-07-23 2020-09-04
 United States hCoV-19/USA/AR-CDC-4388/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T A29147G AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528748
 2020-07-23 2020-09-09
 Indonesia hCoV-19/Indonesia/JB-TFRIC19-R48562/2020
 ATTAAAGGTTTATACCTTCCC1- C241T T1623Y C3037T A5725W C5806Y C6395Y A8446G C14408T C15141Y G19539K A23403G G25563K G26634K C26735Y GGG28881RRS C29362Y

EPI_ISL_528751
 2020-07-23 2020-09-09
 Indonesia hCoV-19/Indonesia/JB-TFRIC19-R49344/2020
 ATTAAA1- C241T C3037T C9891T C11455T C12754T C14120T C14408T C15026T T15900C C18877T A21137G A23403G G23593T G25563T C26735T

EPI_ISL_528752
 2020-07-23 2020-09-09
 Indonesia hCoV-19/Indonesia/JB-TFRIC19-R48875/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C2910T C3037T C5184T G7641T C14408T G15226A C18877T G19999T A23403G G25563T C26735T G28851T

EPI_ISL_529234
 2020-07-23 2020-09-10
 United Kingdom hCoV-19/England/BIRM-602BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2299T C3037T G3955T TCAAATTCG6329- C6539T C14408T A23403G G23426T C23655T T25663C C26936T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532665
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8AFBFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G T27815C C28674T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532679
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8AFCE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532680
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-885663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T G13348T C14408T G14866A T17343G G17561R G20390K C21811T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532695
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8979B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532714
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-881342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532737
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-884804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G26724T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532748
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-889CA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G10688A G13240A C14408T C16332T C20389T T22282C A23403G C23683T C23731T C25782T G28048T G28580T GGG28881AAC C29514T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532749
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8A02F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6196T C6395T A12410G C14408T T14610C T16047C C17125T C17550T A18366G C18788T T19839C T21093C G21987T A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532752
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8854C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C2388T C3037T G4180T C4683T T10453C C11195T G13348T C14408T G14866A T17343G C21811T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532756
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8819C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532771
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8A971B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532776
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8A6B7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532783
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8885FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532787
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8830EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C6026T C14408T A23403G C26029A C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532808
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-87FDB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532819
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-8ADF3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T C19216Y G21624T A23403G C25207Y C26013G C27641T G27877T A28523G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532831
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8AE94D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532854
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-7C69D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532855
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7D2923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C3037T C6395T A6600G C7834T A12410G C14408T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532912
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7C86B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532924
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-7C82E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T C14931T A23403G A25235T C26645T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532938
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7EE8DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532945
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7BB805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532953
 2020-07-23 2020-09-11
 United Kingdom hCoV-19/England/QEUH-7D35C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534732
 2020-07-23 2020-09-14
 United Kingdom hCoV-19/England/ALDP-98CDFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C6401T C14408T G16700T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534749
 2020-07-23 2020-09-14
 United Kingdom hCoV-19/England/LIVE-A97C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C1912T C3037T G4180T T10453Y G11083T C11195T C14408T A23403G A25003G A25596C A28477G GGG28881AAC C29870A

EPI_ISL_534751
 2020-07-23 2020-09-14
 United Kingdom hCoV-19/England/LIVE-A97F5/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C401Y C3037T T7638A C8683T C13335T C14408T A20268G C22088T A23403G C28854T C29870A

EPI_ISL_535476
 2020-07-23 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002612/2020
 AT1- C241T C3037T C4002T G10097A C13536T C14408T C18747T A23403G C23731T C28435T GGG28881AAC G29425T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_537130
 2020-07-23 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A C27532M GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540442
 2020-07-23 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540443
 2020-07-23 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C241T T2998C C3037T C5467T C10954T C14408T C17285T C18877T A23403G G23900C G25563T C26735T G28166T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540452
 2020-07-23 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T G20033T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540454
 2020-07-23 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6070T C6573T A6659G G12191T G13249T C13261T C14408T T16479C A23403G C25867T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540457
 2020-07-23 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C20790T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540458
 2020-07-23 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G T27922C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540459
 2020-07-23 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T C14599T A20742C A23403G T27922C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540460
 2020-07-23 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2182G C3037T C14408T A20742C A23403G T27922C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540461
 2020-07-23 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3796T C14408T A20742C A23403G T27922C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540465
 2020-07-23 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540467
 2020-07-23 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T C19524T A23403G C23731T G25266T T27384C G28361A GGG28881AAC G29764A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540469
 2020-07-23 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC C29171T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540470
 2020-07-23 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540471
 2020-07-23 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9474T C10029T C10449T T12066C C12213T C14408T T19839C C20543T C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540472
 2020-07-23 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T T19839C C20543T C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541178
 2020-07-23 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1205/2020
 A1- C241T C3037T T11675C C14408T T22843C A23403G C25452T C26010T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_541331
 2020-07-23 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1394/2020
 ATTAAAGGTT1- C241T C1059T C1385T G1738T C3037T G3242A C6666T A6925G C8917T C11916T C14408T A23403G G25563T C26858T G28075T G28077T C28087T A29056G C29509T AATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29814-

EPI_ISL_542040
 2020-07-23 2020-09-23
 United States hCoV-19/USA/NMDOH-2020245669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T C29870M

EPI_ISL_547638
 2020-07-23 2020-09-24
 United States hCoV-19/USA/WI-GMF-12045/2020
 ATTAAAGGT1- C241T G596T C1059T C3037T A3344G C3773T C7764T C9521T T14191C C14408T C16260T A23403G A24253T G24386T G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548350
 2020-07-23 2020-09-26
 United States hCoV-19/USA/CA-CZB-3632/2020
 T306W C1059T C3037T G10345A C14408T C16260T T18435G A23403G G25563T C28261T C28821A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548357
 2020-07-23 2020-09-26
 United States hCoV-19/USA/CA-CZB-3631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTC1- C241T C1059T T1927C C3037T G3145A C10319T C14408T A18424G G18984T C19662T C21304T G21624T A22255T A23403G G25563T G25907T C27964T C28472T C28869T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548359
 2020-07-23 2020-09-26
 United States hCoV-19/USA/CA-CZB-3633/2020
 ATTAAAGGTTT1- C96M C241T C1076Y C3037T C10507T G12769T C14408T C19524T A20268G C21575T C22033T G23401T A23403G C26395T C28854T C28887T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_548361
 2020-07-23 2020-09-26
 United States hCoV-19/USA/CA-CZB-3630/2020
 ATTA1- C241T C1059T C3037T C6027Y A8252G C8637T C9360T G11540T C14408T A23299G A23403G G25311T G25563T G29745T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548369
 2020-07-23 2020-09-26
 United States hCoV-19/USA/CA-CZB-3628/2020
 ATTAAAG1- C241T G596A C1059T G1820A G1990T C2939T C3037T A5264G G9269R C11916T C14183T C14408T C16457T C16949Y C17249Y G21987T A23403G G25563T G28326K C28344T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548490
 2020-07-23 2020-09-26
 United States hCoV-19/USA/CA-CZB-3689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATC1- C241T A257R G1021A C3037T C4582T G6404T C14408T C18570T C19859T A20268G A23403G T25123C G25654T C26195T C27925T G28378T G28881T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548539
 2020-07-23 2020-09-26
 United States hCoV-19/USA/CA-CZB-3911/2020
 ATTA1- T78K C241T C3037T T3306A G5950K C6500T C6813Y C14408T C17999T C18877T A20268G C20759T C20825T A23403G T24076C G28048K C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_548540
 2020-07-23 2020-09-26
 United States hCoV-19/USA/CA-CZB-3912/2020
 C241T C3037T C6638T A6716G G11596T C12733T C14408T A23403G G27467T GGG28881AAC G29781T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_550454
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-97779D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C841T C1714T C2048T C3037T T5092C A5821G C8092T A13516G C14408T G18816T G19999T A20268G C20451T A23403G A27675C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550473
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-9777BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C11379T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556565
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948F33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T T16401C G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556825
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C24912T G25440T C27970T C28674T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556835
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941A66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26326T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556839
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941BAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A G13812T C14408T C19488T A23403G C26527T T26715K G26720R C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556841
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94137A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C11379T C14408T C18680T C21557T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556843
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941C8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C2189T C3037T G13520T C13860T C14408T T15978C T16284C C16767Y G19109T A22496C A23403G C27925T GGG28881AAC G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556850
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941C24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106Y C183T C241T C2189T C3037T G13520T C13860T C14408T T15978C T16284C G19109T A22496C A23403G C27925T GGG28881AAC G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556856
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C799T C3037T C13487T C14408T C19488T C21648T A23403G T26957C C28500T GGG28881AAC G29254A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556859
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556861
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1758T C3037T G4510A C14408T G15438T A23403G G25785T GGG28881AAC G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556869
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9422D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T T26497Y GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556874
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9425EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C2252A C3037T G11243T C14408T A14680G C17678T T18723C A20268G C23290A A23403G G25720T C27532T C28854T C29085T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556878
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-942D11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7819T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556899
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-942A29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556905
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-943053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1878T C3037T C14408T A23403G C25096Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556911
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9421F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C T1971C C3037T C7528T C14408T C18877T C22444T A23403G C23940T G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556913
 2020-07-23 2020-09-28
 United Kingdom hCoV-19/England/CAMC-942AFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7173T C8991T C11289T C14408T T15051C A20255G G21255C A23403G G28166A GGG28881AAC G29090T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561290
 2020-07-23 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C12469T C14408T A23403G C27765T GGG28881AAC C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563275
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC11156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563285
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC11178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T5619Y T7540C C14408T G16647T C18555T C21575Y G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563426
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC11597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563447
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC11651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563449
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC11658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563451
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC11665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563457
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC11680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563459
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC11682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563463
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC11697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T G1820A C3037T G3114T C5079Y A6393G T7540C A9925C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563469
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC11711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T G2281R C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C23506Y T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563473
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC11728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2488T C3037T A3456R T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563474
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC11733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1912T C3037T C7162T A7383R T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563476
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC11735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563486
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC11756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563916
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC13995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G C28706M GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564130
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564137
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22825C G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564138
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T A19407G G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564148
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_564153
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564154
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564157
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564162
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C16806Y C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564165
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C11050A C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564166
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C11050A C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564170
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564175
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564176
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T8431Y C14408T G16647T C18555T G22992A G23401A A23403G C23635Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564177
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564182
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564184
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C A11476W G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564188
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T G1820R C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564189
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564190
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_564191
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC6999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T A22466W G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564194
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_564260
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T A1163T C3037T T7540C G11083K C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564262
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564263
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_564264
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564266
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564267
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564304
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C7979Y C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564305
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564319
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564320
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564321
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564322
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564323
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T A1163T C3037T T7540C A7669R C14408T G16647T C18555T G22992A G23401A A23403G G26262C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564324
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T A1163T C3037T T7540C C14408T C16376T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564353
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3737T G6986R T7540C T9779C C14408T G16647T C18555T C19217T G21255C G22992A G23401A A23403G C28725T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564414
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564416
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C4206Y C7162T T7540C C9891Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564418
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G701T A1163T C3037T T7540C T13963C C14408T G16647T C17747T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564419
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T8431Y C14408T G16647T C17439Y C18555T G22992A G23401A A23403G C23635Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564420
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564423
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T6057Y T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_564424
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564425
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T8431C C14408T G16647T C18555T G22992A G23401A A23403G C23635T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564426
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C T8431Y C14408T G16647T C18555T G22992A G23401A A23403G C23635Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564429
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G T28282Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564430
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564432
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A802G A1163T C3037T T7540C C9198T A11246R C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564434
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564449
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564450
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564452
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C11328Y C14408T G16647T C16952Y C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564454
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564476
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564477
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564478
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564479
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3977S C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564481
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C T8431C C14408T G16647T C18555T G22992A G23401A A23403G C23635T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564482
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564483
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C T8431Y C14408T G16647T C18555T G22992A G23401A A23403G C23635Y GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564484
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C T8431C C14408T G16647T C18555T G22992A G23401A A23403G C23635T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564486
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T C22388Y G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564487
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564490
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7547/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T C7162Y T7540C C14408T G16647T C18555T G22992A T23113K G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564497
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22961K G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_564515
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T C19151T T20004W G22992A G23401A A23403G GGG28881AAC ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_564518
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7592/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564528
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564536
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T G17370A C18555T G22992A G23401A A23403G C23613T C26801T C27889T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564540
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564541
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T G17370A C18555T G22992A G23401A A23403G C23613T G25290K C26801T C27889T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564568
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564572
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564626
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC7748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T C29109T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564985
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564986
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G12332T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564987
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G12332T C14408T G16647T C18555T G22992A G23401A A23403G G25599K GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564988
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564989
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6033T T7540C A14355G C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564990
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564991
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564993
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564994
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T GT5743SY T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564995
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T10717Y C14408T G16647T C18555T G22992A G23401A A23403G G26787R GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565224
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G T25414K GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565225
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T C21145Y G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565226
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28313Y C28849T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_565231
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565232
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T T21895Y G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565233
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565235
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565236
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C T9296Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565237
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952Y C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565238
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C24579T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565239
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8854/2020
 ATTAAAGGTTTA1- C241T A1163T C2340Y C3037T G3114T A3954M T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565241
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8856/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565244
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565245
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204R C241T A1163T C3037T T7540C C14408T G16647T C17649T C18555T G22992A G23401A A23403G T28705Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565248
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8869/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T G17370A C18555T G22992A G23401A A23403G C26801T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565249
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8870/2020
 ATTAAAGGTTTATA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26589R C28201Y GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565262
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565266
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565271
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565281
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565287
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G11083K C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565288
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T C20016Y G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565290
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G G27437R GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565291
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565292
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G G25522R GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565293
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC T29753Y GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565294
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T G17370A C18555T G22992A G23401A A23403G C23613T T24304Y C26801T C27889T GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_565295
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC8941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565520
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565628
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565719
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T G1495T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565785
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_565786
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2488T C3037T T7540C T11059K C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C C28866T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565790
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C C28866Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565791
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565792
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565794
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_565795
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC C29606T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565797
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565798
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565799
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A4681G T7061Y T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565801
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A8976G C14408T G15594T G16647T C18555T G22992A G23401A A23403G C27934M GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565803
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15048Y C15540Y G16647T C18555T G18859T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_565805
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565806
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565807
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9962/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C C28866T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565809
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29762T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565810
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565811
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27527Y T27957C C28866Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565814
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29762T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565817
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T C18570Y G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565819
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A79G C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565820
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A8976G C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_565821
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565822
 2020-07-23 2020-09-30
 Australia hCoV-19/Australia/VIC9979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6726T T7540C C9661T C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568597
 2020-07-23 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1499/2020
 ATTAAAGGTTTA1- G23T C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T C15656T A23403G G25563T G25996T C26305T C28087T C29180A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_568598
 2020-07-23 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C2110T C3037T G3471T T5658C C6582T C7819T C8982T C14408T C16260T A23403G G25563T G26849T T28029C A28401G C28821A AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_568599
 2020-07-23 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C2110T C3037T G3471T T5658C C6582T C7819T C8982T C14408T C16260T A23403G G25563T G26849T T28029C A28401G C28821A C29743T AGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29763-

EPI_ISL_568600
 2020-07-23 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1502/2020
 ATTA1- C241T C1059T G1298A C3037T T6988C G12694A C14408T G17193T A23403G G25563T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_568602
 2020-07-23 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1504/2020
 AT1- C241T G487A C1059T C1385T G1738T C3037T A3075G G3242A C8240T C11916T C14408T C16178T C17676T A23403G G25563T C28087T T29619A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_569617
 2020-07-23 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0009/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C5986T C9246T C14408T T15060G A23403G G25563T C26625T C28367T C29614T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT968062
 2020-07-23 2020-09-04
 United States SARS-CoV-2/human/USA/AR-CDC-4388/2020
 G199A C241T C1059T C2925T C3037T C14408T G15128T G17110T G18538T A23403G G25563T G26690T A29147G AAAAAAAAAAAAAAAAAAAAA29883-

MT971934
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6303/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T TGGTCATGTTATGGT508- C635T A1163T C3037T T7540C C14408T G16647T C17125T C18555T C22480T G22992A G23401A A23403G C25614T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MT971985
 2020-07-23 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T T1324C C3037T G3340T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G AGTGTTTATAAC27714- GGG28881AAC

MW012272
 2020-07-23 2020-09-17
 Serbia SARS-CoV-2/human/SRB/KM996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGA1- C241T C3037T C4002T G5950T G10097A C13536T C14408T C15738T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW023439
 2020-07-23 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1205/2020
 A1- C241T C3037T T11675C C14408T T22843C A23403G C25452T C26010T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MW023592
 2020-07-23 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1394/2020
 ATTAAAGGTT1- C241T C1059T C1385T G1738T C3037T G3242A C6666T A6925G C8917T C11916T C14408T A23403G G25563T C26858T G28075T G28077T C28087T A29056G C29509T AATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29814-

EPI_ISL_511994 LR882220
 2020-07-24 2020-08-10
 Switzerland 220001
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G94T C241T G625R T3017Y C3037T T3532W A3538R C5365T A5563R G6901K A6999R A7015R A9878R A9903W G10058R T10076W C13708A C14408T A16210D A16214W A16334R C16349M A16355M C19955Y A19971R G19999S C20081Y C20233T C22210T A23403G A26097G G28003T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_511997 LR882226
 2020-07-24 2020-08-10
 Switzerland 220010
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T T7023W G9130T G14316A C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512028 LR882288
 2020-07-24 2020-08-10
 Switzerland 220058
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T A17713R A23403G G23438T GGG28881AAC C29095T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512030 LR882296
 2020-07-24 2020-08-10
 Switzerland 220060
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T2935Y C3037T T3144K A6930M G7016K C14408T C19488T A23403G G26172T G26828R G27806K C28500T GGG28881AAC G29254A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512098
 2020-07-24 2020-08-10
 Ireland hCoV-19/Ireland/71IRL81038/20
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6566T G10265A C14408T A15972G C17678T A17864G C19718T G20002T G22205T A23403G C23707T T24892C G27541T G27544T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512100
 2020-07-24 2020-08-10
 Ireland hCoV-19/Ireland/71IRL82463/20
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G16117T A23403G G26109T C28377T GGG28881AAC C29253T C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512497
 2020-07-24 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1696B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T T15555C G21624T A23403G G27877T A28523G GGG28881AAC

EPI_ISL_512498
 2020-07-24 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1696C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T C21707Y A23403G C26013G G27877T A28523G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_512509
 2020-07-24 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169778/2020
 ATTAAAGGTT1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512518
 2020-07-24 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-16981B/2020
 ATTAAAGGTTTATACCT1- C241T C3037T T3049C C14408T G21624T A23403G G27877T A28523G GGG28881AAC

EPI_ISL_512542
 2020-07-24 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C3037T T3049C C14408T T20739C G21624T A23403G G27877T A28523G GGG28881AAC

EPI_ISL_514129
 2020-07-24 2020-08-14
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_356/2020
 C241T A1163T C3037T C4582T C14408T G20006T A23403G C24904T C28253T GGG28881AAC

EPI_ISL_514130
 2020-07-24 2020-08-14
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_358/2020
 C241T A1163T C3037T C3961T C5730T A7340G G9584A C14408T C14805T C16952T A23403G G23593T G25644T C26527T G28001C C28770T GGG28881AAC

EPI_ISL_514233
 2020-07-24 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_359/2020
 C241T A1163T C3037T C6031T C14408T G20238T G22021T A23403G C25904T G26211T GGG28881AAC C29077T

EPI_ISL_514234
 2020-07-24 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_361/2020
 C241T C3037T C14408T C15279T A23403G G24193T GGG28881AAC G29737A

EPI_ISL_514235
 2020-07-24 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_362/2020
 C241T C3037T C14408T C15279T A23403G G24193T GGG28881AAC G29737A

EPI_ISL_514236
 2020-07-24 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_363/2020
 C241T C583T C3037T T4125C C6070T G11221T C12403T C14408T G20269T C21575T T21994C A23403G T23563C C24374A C25665T C26645T GGG28881AAC

EPI_ISL_514237
 2020-07-24 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_364/2020
 C241T G487T A1163T C1441T C3037T C3961T C6525T G6975T T14091C C14408T C21811T C22987T A23403G C27509T G27731T C28744T GGG28881AAC

EPI_ISL_514306
 2020-07-24 2020-08-16
 Israel hCoV-19/Israel/CVL-n26800/2020
 AT1- G105T G210T C241T C313T C1059T C1528T C2836T C3037T G4510A G5429T C8389T C8905T T10288C C11916T C13821T C14408T G15438T G16117T C18998T A23125T G23149A A23403G G25563T G25617T G26217T C26625T G26951T G27604T G28086A T28088A G28851T GGG28881AAC G29000T G29540A A29752T

EPI_ISL_515606
 2020-07-24 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G174T C241T T694A C1387T C2939A C3037T A3643C C9857T T11920C C14408T A20465C G21600T C22687T A23403G A23920G A26530G G27561T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515767
 2020-07-24 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002403/2020
 ATT1- C241T G1158T C3037T C4832T C14408T A23403G C23625T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_515775
 2020-07-24 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T C6762T C9559T G11083T T12503C C14408T T18927C G22801T A23403G C25413T G25455T G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515776
 2020-07-24 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002414/2020
 ATTA1- C241T C3037T T12503C C14408T A23403G G25770T GGG28881AAC CC29721TT AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_516481 MT929007
 2020-07-24 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C6285T C14016T C14408T C19524T C20429T A23403G C28977T A29436G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516483 MT929009
 2020-07-24 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TGGTCATGTTATGGT508- T1562C G2035T C3037T C11956T C12025T C14408T T19839C C23216T A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516498 MT929024
 2020-07-24 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C14408T G18985T A23403G G25563T G27147T C27964T C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516500 MT929026
 2020-07-24 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5339T C5893T C8140T C8208T C14408T C16260T C19172T C22329T A23403G G25440T G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516509 MT929035
 2020-07-24 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T G2351A C3037T C10319T C14408T A23403G G25563T C27964T G28939T C29375T G29690A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516526 MT929051
 2020-07-24 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1407G C3037T C5183T A10323G C13255T C14408T T15276A C16293T C17939T A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516528 MT929053
 2020-07-24 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G463T C715T C1059T G1957T C3037T C11916T C14408T C22987T A23403G A23586G G25563T A26904G ACGATCG29749- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516530 MT929055
 2020-07-24 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1824T T3011C C3037T C14408T C19718T G22205T A23403G C25919T T27869C T28853G C29149T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516531
 2020-07-24 2020-08-21
 United States hCoV-19/USA/WI-UW-1106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516548 MT929072
 2020-07-24 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517590
 2020-07-24 2020-08-24
 United Kingdom hCoV-19/Wales/PHWC-169B03/2020
 ATTA1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T

EPI_ISL_518067 MT971857
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518072 MT971862
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6031/2020
 ATTAAAGGTTTATACCTTC1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518073 MT971863
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518074 MT971864
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22498T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518075 MT971865
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518076 MT971866
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G G28539A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518079 MT971872
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518094 MT971868
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C1267T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518232 MT971888
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17766A C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518253 MT971877
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518254 MT971878
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC G29690C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518255 MT971879
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22328C G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518262 MT971887
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22328C G22992A G23401A A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_518265 MT971891
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518290 MT971933
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4999T T7540C C14408T G15594T G16647T C18555T C22978T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518302 MT971903
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T733C A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518304 MT971905
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204A C241T A1163T C3037T T7540C C14408T G16647T C17649T C18555T G22992A G23401A A23403G T28705C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518305 MT971906
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6317/2020
 ATTAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518306 MT971907
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518315 MT971942
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G61T C241T A1163T C3037T G4300T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518784 MT971840
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G G28539A GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_518795 MT971851
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3042A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521172 MT971988
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521173 MT971989
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521174 MT971990
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521175 MT971991
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521176 MT971992
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521177 MT971993
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521178 MT971994
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T25291C C27059T GGG28881AAC

EPI_ISL_521179 MT971995
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14318T C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521180 MT971996
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C17285T C18555T G22992A G23401A A23403G A26162G G27877T GGG28881AAC G29579A

EPI_ISL_521181 MT971997
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521182 MT971998
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC G29579A

EPI_ISL_521183 MT971999
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T24331A GGG28881AAC G29692T G29777T

EPI_ISL_521184 MT972000
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521186 MT972002
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521187 MT972003
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC G29579A

EPI_ISL_521188 MT972004
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521189 MT972005
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521190 MT972006
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521191 MT972007
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521192 MT972008
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C8480T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521215 MT972031
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521217 MT972032
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521218 MT972033
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521219 MT972034
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G793A A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521220 MT972035
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18570T G22992A G23401A A23403G A26162G GGG28881AAC G29579A

EPI_ISL_521221 MT972036
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G18985T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521222 MT972037
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26013T A26162G GGG28881AAC G29579A

EPI_ISL_521227 MT972038
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521276 MT973289
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G7960T C9166T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G27463A GGG28881AAC

EPI_ISL_521295 MT971779
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521296 MT971780
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6526/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26464A GGG28881AAC

EPI_ISL_521297 MT971781
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26464A GGG28881AAC

EPI_ISL_521298 MT971782
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6033T T7540C C8616T C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_521299 MT971783
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26464A GGG28881AAC

EPI_ISL_521300 MT971784
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6530/2020
 A1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26464A GGG28881AAC

EPI_ISL_521303 MT971786
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3737T T7540C C14408T G16647T C18555T C19217T G21255C G22992A G23401A A23403G T27384C C28725T GGG28881AAC

EPI_ISL_521304 MT971787
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1722T C3037T G3114T T7540C C10741T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521305 MT971788
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521306 MT971789
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2939T C3037T T7540C C14408T G16647T C18555T C18692T G22992A G23401A A23403G GGG28881AAC G29140T

EPI_ISL_521314 MT971790
 2020-07-24 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C6726T T7540C C9661T C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_523737
 2020-07-24 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T G12191T C14408T T16479C A23403G C25587A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_526012
 2020-07-24 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2775G C3037T C8818T T13644C C14408T C15952T G20980A G23270T A23403G

EPI_ISL_526013
 2020-07-24 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1719/2020
 ATTA1- C241T C1059T T1927C C3037T C10319T G10870T C14408T T17016C A18424G C21304T A22255T A23403G G25563T G25907T C26408T C27964T C28472T C28869T

EPI_ISL_526014
 2020-07-24 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1723/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T T2884C C3037T G4285T C9778T C14408T A18121G A20268G A23403G C28854T C28887T

EPI_ISL_526015
 2020-07-24 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1729/2020
 ATTA1- C241T C2399T C3037T C4320T A5546G C7788T C11884A C14408T T20424C A23063T A23403G G26439T C28093T GGG28881AAC

EPI_ISL_526018
 2020-07-24 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2334T C3037T G4444A C12116T C14408T T19839C A23403G GGG28881AAC

EPI_ISL_526019
 2020-07-24 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2884C C3037T G4285T C9778T C14408T G17616A A18121G A20268G A23403G C28854T C28887T

EPI_ISL_526020
 2020-07-24 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1753/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T G19542T A20268G A23403G G24328T C28854T C29274A

EPI_ISL_526021
 2020-07-24 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1757/2020
 A1- C241T C3037T C14408T A20268G A23403G C28854T C29274A

EPI_ISL_526107
 2020-07-24 2020-09-01
 United States hCoV-19/USA/WA-OHSU-1721/2020
 A1- C241T C3037T C14408T A20268G A23403G C24700T C28854T C29274A

EPI_ISL_526336
 2020-07-24 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97E040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3885T C4002T C6762T G10097A A11047T T11731C C13536T C14408T G21800T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526379
 2020-07-24 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A9564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T T5158C C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC C29870A

EPI_ISL_526396
 2020-07-24 2020-09-01
 United Kingdom hCoV-19/England/MILK-9773C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526397
 2020-07-24 2020-09-01
 United Kingdom hCoV-19/England/MILK-97742D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526398
 2020-07-24 2020-09-01
 United Kingdom hCoV-19/England/MILK-97743C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526399
 2020-07-24 2020-09-01
 United Kingdom hCoV-19/England/MILK-977663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T T16401C G16741T G20580T T21854C A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526709
 2020-07-24 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T T2058A A2869G C3037T C12115T A13712G C14408T C21306T A23403G C25276A GGG28881AAC C29095T

EPI_ISL_526710
 2020-07-24 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2776/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T T2058A A2869G C3037T C12115T A13712G C14408T C21306T A23403G C24382T C25276A T28829C GGG28881AAC C29095T

EPI_ISL_526711
 2020-07-24 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2777/2020
 ATTAAAGGTTT1- C241T T2058A A2869G C3037T C12115T A13712G C14408T C21306T A23403G GGG28881AAC C29095T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_526713
 2020-07-24 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2779/2020
 ATTAAAGGTTT1- C241T T2058A A2869G C3037T C12115T A13712G C14408T C21306T A23403G C25276A GGG28881AAC C29095T AAAAAAAAAA29894-

EPI_ISL_526714
 2020-07-24 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCT1- C241T T2058A A2869G C3037T C12084T C12115T A13712G C14408T C21306T A23403G C25276A GGG28881AAC C29095T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526715
 2020-07-24 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2781/2020
 ATTAAAGGTTTATAC1- C241T T2058A A2869G C3037T C12115T A13712G C14408T C21306T A23403G C25276A GGG28881AAC C29095T AAAAAAAAAAAAAAAA29888-

EPI_ISL_526716
 2020-07-24 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2782/2020
 ATTAAAGGTTTATACC1- C241T T2058A A2869G C3037T C12115T A13712G C14408T C21306T A23403G C25276A GGG28881AAC C29095T AAAAAAAAAAAAAAAA29888-

EPI_ISL_526717
 2020-07-24 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2783/2020
 ATTAAAGGTTTATACC1- C241T T2058A A2869G C3037T C12084T C12115T A13712G C14408T C21306T A23403G C25276A GGG28881AAC C29095T AAAAAAAAAAAAAAAA29888-

EPI_ISL_526718
 2020-07-24 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2784/2020
 ATTAAAGGTTTATACC1- C241T T2058A A2869G C3037T C12115T A13712G C14408T C21306T A23403G C25276A GGG28881AAC C29095T AAAAAAAAAAAAAAAA29888-

EPI_ISL_526719
 2020-07-24 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2785/2020
 ATTAAAGGTTTATACC1- C241T T2058A A2869G C3037T C12115T A13712G C14408T C21306T A23403G C25276A GGG28881AAC C29095T AAAAAAAAAAAAAAAA29888-

EPI_ISL_526720
 2020-07-24 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2786/2020
 ATTAAAGGTTTATACC1- C241T T2058A A2869G C3037T C11074T C12115T A13712G C14408T C21306T A23403G C25276A GGG28881AAC C29095T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_526721
 2020-07-24 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2787/2020
 ATTAAAGGTTTATACC1- C241T T2058A A2869G C3037T C12115T A13712G C14408T C21306T A23403G C24382T C25276A T28829C GGG28881AAC C29095T AAAAAAAAAAAAAAAA29888-

EPI_ISL_526722
 2020-07-24 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTC1- C125T G188- C241T T2058A A2869G C3037T C12115T A13712G C14408T C21306T A23403G C25276A GGG28881AAC C29095T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_526724
 2020-07-24 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T2058A A2869G C3037T C12084T C12115T C14408T C21306T A23403G C25276A GGG28881AAC C29095T

EPI_ISL_529528
 2020-07-24 2020-09-10
 United Kingdom hCoV-19/England/ALDP-97DEA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532641
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-94119E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C5622T A8040G C14408T G15602A C18881T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532657
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-882059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C G9105A C14408T G21624T A23403G G27877T A28523G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532662
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-8A42F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC G28922T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532668
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8A6514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532671
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-894D5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532678
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-87F611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A C11124T C14408T G14792T C15848T C16376T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532701
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8AF5DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G G22335T A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532704
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89531E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532717
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8AE576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3421G C4002T T4714C C7101T G10097A C10401T C13536T C14408T A23403G C23731T C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532721
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8AD331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C401T G625T C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532724
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-8AB3D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532727
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8A7D1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532729
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89E2AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532734
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8988EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G T27815C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532735
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89AE36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532768
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-8AB333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC G28922T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532773
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-8A8855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T C25613T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532777
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-881D53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C401T G625T C3037T C13665T C14408T C15960T A16438R G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532779
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8A03C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T C26885Y G28378K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532785
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89F411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532790
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-887160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C401T G625T C3037T C13665T C14408T C15960T G16741T C20133Y T23035Y A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532794
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-888396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532800
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-894CE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G407R C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532807
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-881403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C9430T C14408T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532810
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89D729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9207T A9236C C14408T G21046K G21082S A21085M T21087C A21323G A23403G C24802A GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532820
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-886BEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T G2183A C3037T A9433T T9668C G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532832
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-893E5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532833
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-8A88EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T C25613T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532834
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89E315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532878
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-7B57D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C5100T C7051Y C7303T C8964T C10252T G11083T C14408T G19656T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532896
 2020-07-24 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-7BC303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534750
 2020-07-24 2020-09-14
 United Kingdom hCoV-19/England/LIVE-A97D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C313T C1912T C3037T G4180T T10453Y G11083T C11195T C14408T A23403G A25003G A25596C GGG28881AAC C29870A

EPI_ISL_540447
 2020-07-24 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540462
 2020-07-24 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T T26076C C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540463
 2020-07-24 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T T26076C C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540464
 2020-07-24 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540473
 2020-07-24 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T A3084G C3261T C14408T C14980T A15984T C20946T C22075T A23403G C27945T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540474
 2020-07-24 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540475
 2020-07-24 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5239T C10029T C10449T T12066C C14408T G15543T T19839C C20543T C21595T C21646T A23403G T25711C C26846T G28134T C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540476
 2020-07-24 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10279T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T T28009C G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540477
 2020-07-24 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T C14408T A15984T C20946T C22075T A23403G C27945T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541181
 2020-07-24 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1208/2020
 A1- C241T C3037T C3096T C14408T C16616T G22468T A23403G A25505C C26885T G28857T C28887T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_541182
 2020-07-24 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1209/2020
 AT1- C241T C1288T G1298A C3037T C5548T C14408T T15294C C18877T A23403G G25445T G25563T G28851T G29254T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_547433
 2020-07-24 2020-09-24
 United Kingdom hCoV-19/Gibraltar/203160593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C106T C241T C1063T C3037T GT5743SY G11851T C12053T C14408T C18828T C22227T C22680T A23403G A24369T G25088T GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_547640
 2020-07-24 2020-09-24
 United States hCoV-19/USA/WI-GMF-12260/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C14408T C15324T C16260T C21575T C21622T C22329Y A23403G G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547641
 2020-07-24 2020-09-24
 United States hCoV-19/USA/WI-GMF-12278/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T T1592C C2416T C3037T C6113T C14408T T16530A G21372T A23403G G25563T C27294Y C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548485
 2020-07-24 2020-09-26
 United States hCoV-19/USA/CA-CZB-3746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAAT1- C241T C1059T C2433T C3037T C3602T C12897Y C14408T C16762T C19572T G22112A A23403G A24894C G25563T G27583T G29024T C29095T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_548488
 2020-07-24 2020-09-26
 United States hCoV-19/USA/CA-CZB-3741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACA1- C241T C1059T A1629C A2861G C3037T C3602T C10138T G12793T C14408T C16762T C19610T G21468T T22020Y C22530T A23403G C24824T G25563T G25647T C26455T C28708T T29515C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548493
 2020-07-24 2020-09-26
 United States hCoV-19/USA/CA-CZB-3898/2020
 C241T C3037T C6843T T12592C C14408T C17894T A20268G C21008T T22828C A23403G G27758T G28817A C28854T C28887T G29543T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_548499
 2020-07-24 2020-09-26
 United States hCoV-19/USA/CA-CZB-3919/2020
 CG241T C1997T C3037T C3768T G3871T C8327Y A9307G C10834T A13498G C14408T C17135T C18086T T19839C A23403G G27430A GGG28881AAC A29403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_548517
 2020-07-24 2020-09-26
 United States hCoV-19/USA/CA-CZB-3900/2020
 A1- C203T C241T C1059T C2003T C3037T G3955A A4229G A5560G C5884T G6653A G10121A C13887T C14408T T15993C C18306Y A23403G G24410A G25563T G28975T A29833W GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_548519
 2020-07-24 2020-09-26
 United States hCoV-19/USA/CA-CZB-3899/2020
 G8R C241T T317Y C1059T C3018T C3037T G3328T A8252G C9360T C13536T C14408T G15543T G17523T T17773A C17999T A23299G A23403G G25311T G25563T T28078C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_548521
 2020-07-24 2020-09-26
 United States hCoV-19/USA/CA-CZB-3902/2020
 AT1- C241T C466T A696C C3037T G3871T C6990T C7101Y A11201G C12294T C14408T C16580T A22339R A23403G G25606K AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548542
 2020-07-24 2020-09-26
 United States hCoV-19/USA/CA-CZB-3901/2020
 T2Y C66T C241T C3037T C14408T A23403G C25463T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_549094
 2020-07-24 2020-09-28
 Norway hCoV-19/Norway/2967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549095
 2020-07-24 2020-09-28
 Norway hCoV-19/Norway/2968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C12357T C14408T A15972G C17678T A17864G C19718T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549096
 2020-07-24 2020-09-28
 Norway hCoV-19/Norway/2969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549098
 2020-07-24 2020-09-28
 Norway hCoV-19/Norway/2972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549104
 2020-07-24 2020-09-28
 Norway hCoV-19/Norway/2978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2700T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T G22801T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549105
 2020-07-24 2020-09-28
 Norway hCoV-19/Norway/2979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549106
 2020-07-24 2020-09-28
 Norway hCoV-19/Norway/2980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549108
 2020-07-24 2020-09-28
 Norway hCoV-19/Norway/2983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17550T C17678T A17864G C19718T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549110
 2020-07-24 2020-09-28
 Norway hCoV-19/Norway/2985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549111
 2020-07-24 2020-09-28
 Norway hCoV-19/Norway/2986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550422
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-977593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550435
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-977566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550437
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-9773B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3569G C3695T A6211G A8659G A9883G C14408T C18167T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550447
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-977469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C8318A G11083T C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC T29464C ACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29707-

EPI_ISL_550458
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9775C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550459
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-97737B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C16092Y C19488T A23403G G24102S C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550462
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-977627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C6968T C14408T A15984T G17790T C20946T C21575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550464
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-97752A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4455T G7295T C12784T C14408T T22150C A23403G G23678T G25523T G25563T C27297T G28001T G28346T G28917T C29247T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550471
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-9779A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T A23403G C25207T C25665T T26160C G26918T C28453T GGG28881AAC T29464C ACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29707-

EPI_ISL_550480
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-977548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C23481T C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550488
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-977399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3569G C3695T A6211G A8659G A9883G C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550490
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-97738A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3569G C3695T A6211G A8659G A9883G C14408T C18167T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550504
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-977645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3695T C14408T C18744T A20268G A23403G G25049T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550515
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-9775FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C20233T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555955
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94A1C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3403T A6308C C14408T T19839C TGG21294AAA A23403G G25793T G26293A G26314T C26681T C28846T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556357
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B64A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C7318Y C13665T C14408T C15960T T16401C G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556425
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B1FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T T16401C G16741T C17410Y G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556471
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B03D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T C28256A G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556532
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/CAMC-947471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T G25996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556851
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941D12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C11074T C13665T C14408T C15960T G16741T C19273T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556860
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C13458T C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556862
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C13458T C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556879
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94323F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A A2576T C3037T C5175T C6401T C14408T G16700T A23403G C25916T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556890
 2020-07-24 2020-09-28
 United Kingdom hCoV-19/England/CAMC-942054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19951T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560408
 2020-07-24 2020-09-29
 Czech Republic hCoV-19/Czech Republic/NRL-8121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T C17518T C21575T A23403G G23438T GGG28881AAC C29095T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_560409
 2020-07-24 2020-09-29
 Czech Republic hCoV-19/Czech Republic/NRL-8122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T C17518T A23403G G23438T C27442T GGG28881AAC C29095T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_560410
 2020-07-24 2020-09-29
 Czech Republic hCoV-19/Czech Republic/NRL-8123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T C17518T A23403G G23438T GGG28881AAC C29095T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_560411
 2020-07-24 2020-09-29
 Czech Republic hCoV-19/Czech Republic/NRL-8124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T C17518T A23403G G23438T GGG28881AAC C29095T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_560598
 2020-07-24 2020-09-29
 France hCoV-19/France/BR8930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560599
 2020-07-24 2020-09-29
 France hCoV-19/France/BR8931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561150
 2020-07-24 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561151
 2020-07-24 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C12469T C14408T A23403G C27765T GGG28881AAC C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561153
 2020-07-24 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C11008T C11962T C14408T A20268G A23403G C25886T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561154
 2020-07-24 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C12469T C14408T A23403G C27765T GGG28881AAC C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561155
 2020-07-24 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C3653T C8208T C14408T A20268G A23403G C28833T G29553T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561156
 2020-07-24 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561157
 2020-07-24 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561158
 2020-07-24 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C14408T A20268G A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561159
 2020-07-24 2020-09-30
 Gambia hCoV-19/Gambia/GC19-2991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C12469T C14408T A23403G C27765T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561268
 2020-07-24 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T ATG1605- C3037T C4900T G6611T C9491T C14408T A23403G C24621T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562170
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T C22295T G22992A G23401A A23403G C23457A G27676T C28677T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562758
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCC28879- ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563135
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC10874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C10078Y C14408T G16647T C18555T G22992A G23401A A23403G C25169Y GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563282
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC11174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563291
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC11193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C11747Y C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563295
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC11202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25690T G28628T GGG28881AAC C29253T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563329
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC11323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T A16566G G16647T C18555T G22992A G23401A A23403G AG28877WS GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563330
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC11324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3737T T7540C C14408T G16647T C18555T C19217T G21255C G22992A G23401A A23403G C28725T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563545
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC12236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T A16566G G16647T C18555T G22992A G23401A A23403G AG28877WS GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563924
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC14009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564003
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC6710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564078
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC6825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T GT5743SY T7118K T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564079
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC6826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC C29272Y GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_564080
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC6827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T C29109T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564081
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC6829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564082
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC6830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564083
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC6831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564084
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC6832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T GT5743SY T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564085
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC6833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13426T A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564136
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC6915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC C29200T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564195
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G386K G558K A1163T G2036K G2247K G2250K C3037T G3564K G4505K G5018K G5924K T7540C C8476Y G8790K G10101K G11535K G14277K C14408T G16647T G16787K G17096K G17849K C18555T G19006K G19009K C22383B C22480T G22899K G22992A G23401A A23403G G25278K GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564197
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24588T C27600T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564325
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T T16491Y G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564326
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26262C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564327
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564328
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564329
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18138M C18555T C19217T G21666T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564355
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C A8657M C8668Y C14408T G16647T C18555T T21357Y G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564356
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T11541G C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564435
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564437
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C1191Y C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564438
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC C29200T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564441
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_564442
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564443
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29081K GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564444
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C8480T C14408T G16647T C18555T C20703Y C22480T G22992A G23401A A23403G C27059T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564445
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C T11437W C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_564446
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564447
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7494/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564448
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T14305Y C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564472
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T A5249R T7540C A12095R C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564474
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564475
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16377A G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564485
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564494
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564495
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C3784Y T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837M

EPI_ISL_564516
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564517
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564520
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T A3090G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564542
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A97R C241T A1163T C3037T T7540C C14408T G15594K G16647T C18555T G22992A T23104Y G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564627
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G C24382Y A26162G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564684
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC7830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T C6968T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564996
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T GT5743SY T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564998
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T GT5743SY T7540C T13963Y C14408T G16647T T18509G C18555T C18568T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565137
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T A19208M G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565139
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565145
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C16949T C18555T C22480T G22992A G23401A A23403G C23601T C27881T T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565229
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T A21822R C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565246
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C18693Y C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565250
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T3043Y T7540C C14408T G16647T C18555T G20274K G22992A G23401A A23403G C25324Y T27785C GGG28881AAC C29200T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565251
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C25355M GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_565253
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565254
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565255
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565263
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T C5144Y T7540C C14408T G16647T C18555T C22208Y C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565267
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC8893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G G28681K GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_565355
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC9018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565356
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC9019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565357
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC9020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28253Y GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565358
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC9021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565697
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC9761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565710
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC9780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565711
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC9781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565720
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC9792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A4269R T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565721
 2020-07-24 2020-09-30
 Australia hCoV-19/Australia/VIC9793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19554T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_568603
 2020-07-24 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- C241T C3037T C4113T C5907T C14408T C18086T G21974C C23191T A23403G T27534C GGG28881AAC GAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29781-

EPI_ISL_568604
 2020-07-24 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1506/2020
 C241T C379T C673T C3037T T4125C C14220T C14408T A23403G T25479A GGG28881AAC AGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29797-

EPI_ISL_568606
 2020-07-24 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C7165T A10323G C14408T T15276A C21552T A23403G G25563T G28842T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568607
 2020-07-24 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1509/2020
 ATTAAAGGT1- C241T C313T C823T C3037T A4576T T4579A C7471T C14408T C21707T A23403G G26526T G28514T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_568608
 2020-07-24 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAG1- C241T C1059T C1385T G1738T C3037T G3242A C7318T C11916T C14408T A23403G A25495G G25563T C28087T CGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29750-

EPI_ISL_568610
 2020-07-24 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1512/2020
 ATTAAAGGTTTA1- G185T C241T C1059T C1385T G1738T C3037T G3242A G7037T C11916T C14408T C20703T A23403G A24987T G25563T C25703T C28087T G29332T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_569024
 2020-07-24 2020-10-02
 France hCoV-19/France/IHU-0977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569025
 2020-07-24 2020-10-02
 France hCoV-19/France/IHU-0978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G G22894A A23403G G24197T C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569026
 2020-07-24 2020-10-02
 France hCoV-19/France/IHU-0979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C6681T T12436A C14408T A20268G C22088T G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT929056
 2020-07-24 2020-08-26
 United States SARS-CoV-2/human/USA/PN-UW-1106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW023442
 2020-07-24 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1208/2020
 A1- C241T C3037T C3096T C14408T C16616T G22468T A23403G A25505C C26885T G28857T C28887T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

MW023443
 2020-07-24 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1209/2020
 AT1- C241T C1288T G1298A C3037T C5548T C14408T T15294C C18877T A23403G G25445T G25563T G28851T G29254T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_500717
 2020-07-25 2020-07-29
 Australia hCoV-19/Australia/NSW2608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_508605
 2020-07-25 2020-08-04
 Australia hCoV-19/Australia/SAP472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T G17370A C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_512029 LR882289
 2020-07-25 2020-08-10
 Switzerland 220059
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A6973R C9870T G11842A A12759G C14408T T18069Y G18292T A20268G A23403G C27813T C28854T G29179R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512031 LR882295
 2020-07-25 2020-08-10
 Switzerland 220062
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3040Y TA3136WR T3144K A6920W C9870T G11842A A12759G C14408T G18292T A20268G A23403G C27813T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512032 LR882292
 2020-07-25 2020-08-10
 Switzerland 220063
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G881R C1912T C3037T T3095W T3144K A3559M A6034M G6922R G6960K C9286T C9438T G11083T C14178T C14408T A18221G C19763T C21549Y C21997T A23403G GGG28881AAC C29835T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512033
 2020-07-25 2020-08-10
 Switzerland hCoV-19/Switzerland/220064_702_F01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T C3037T T3095C G10265A C12880T C14408T A15972G C19718T A23403G G23608K C23896T G28077T C28603T T28759Y GGG28881AAC G29692K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512034 LR882299
 2020-07-25 2020-08-10
 Switzerland 220065
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C337Y C3037T G9130T C14408T C16887T A23403G T27319C G28487A C28868T GGG28881AAC G29468T C29632T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512035 LR882310
 2020-07-25 2020-08-10
 Switzerland 220066
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T C19488T A23403G G26172T C28500T GGG28881AAC G29254A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512042 LR882330
 2020-07-25 2020-08-10
 Switzerland 220073
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T6853Y T7035W G10265A C14408T C15720T A15972G C19718T G20569T C20589T C21707T A23403G T24763C C25169T G26700T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512477
 2020-07-25 2020-08-11
 United Kingdom hCoV-19/Scotland/CVR3957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C5100T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512483
 2020-07-25 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1695D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512499
 2020-07-25 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1696D5/2020
 ATTA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512520
 2020-07-25 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169839/2020
 ATTAAAGGTTTA1- C241T C3037T T3049C C14408T C21575T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512521
 2020-07-25 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-169848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512528
 2020-07-25 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1698B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G G27877T A28523G GGG28881AAC

EPI_ISL_512545
 2020-07-25 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1699CD/2020
 ATT1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_512652
 2020-07-25 2020-08-11
 Latvia hCoV-19/Latvia/097/2020
 C241T C6666T C14408T A23403G G25429T C26681T C29167T A29385G C29421T

EPI_ISL_512837
 2020-07-25 2020-08-12
 Singapore hCoV-19/Singapore/801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C6310A C6312A C7817T A9134G A9409G G11083T A12820G C13730T G15006T C15450T G18937T C19524T C23185T C23929T C25308A C28311T AAAAAAAAAAAA29892-

EPI_ISL_516511 MT929036
 2020-07-25 2020-08-21
 United States SARS-CoV-2/human/USA/IL-UW-1085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6037T C14408T C18486T A20268G T22162C A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516512 MT929037
 2020-07-25 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9120T C14408T G18186T A19899T A21464G A23403G G25444A G25563T G29543T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516651
 2020-07-25 2020-08-21
 Ecuador hCoV-19/Ecuador/USFQ-167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2987C C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_518063 MT971853
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3768T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518071 MT971861
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_518080 MT971873
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6039/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T C15579T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518234 MT971947
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518250 MT971874
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518251 MT971875
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5284T T7540C G11876T C14408T G16647T C18555T C19217T G21255C G22992A G23401A A23403G C28725T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518252 MT971876
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15720T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518263 MT971889
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518264 MT971890
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518266 MT971892
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G374A A1163T C3037T T7540C C14408T G16647T C18555T G19009T G22992A G23258A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518318 MT971945
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518324 MT971952
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C9438T C14408T G16647T C18555T G22992A G23401A A23403G T27785C A28594G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518781 MT971837
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C27641T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518792 MT971848
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6017/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518796 MT971852
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521271 MT973290
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C1480T C3037T T7540C C14408T C16490T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_521307 MT971795
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_521308 MT971796
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521309 MT971791
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2510G C3037T T7540C C14408T G16647T C17649T C18555T G22992A G23401A A23403G G27382C GGG28881AAC

EPI_ISL_521310 MT971792
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521311 MT971793
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521312 MT971794
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521313 MT971797
 2020-07-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6543/2020
 ATTAAAGGTTTATA1- C241T A1163T C3037T T7540C A8784G C14408T G16647T C18555T G22992A G23401A A23403G C25836T G25996T GGG28881AAC

EPI_ISL_526022
 2020-07-25 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1763/2020
 A1- C241T T2884C C3037T G4285T C9778T C14408T A18121G A20268G A23403G C28854T C28887T

EPI_ISL_526024
 2020-07-25 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C6541T C12076T C14408T C18348T A22320G A23403G C25427A G25563T C27964T C28093T C29625T

EPI_ISL_526025
 2020-07-25 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8818T G12565T C14408T C15952T G18337T G20980A C21789T A23403G

EPI_ISL_526026
 2020-07-25 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1779/2020
 AT1- C241T C3037T G3692T A8974T C14408T A20268G C20759T A23403G T24076C C28854T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_526027
 2020-07-25 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10042G C14318T C14408T C16260T C16575T G22484T A23403G G24781T G25273T G25563T C28821A

EPI_ISL_526028
 2020-07-25 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8974T C14408T G15906T A20268G C20759T A23403G T24076C C28854T

EPI_ISL_526029
 2020-07-25 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8974T C14408T A20268G C20759T A23403G T24076C C28854T

EPI_ISL_526108
 2020-07-25 2020-09-01
 United States hCoV-19/USA/WA-OHSU-1799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4423T A12199G C14408T C14877T C15933T G16968T T19839C A23403G T23986C C26461A T28187C GGG28881AAC

EPI_ISL_526382
 2020-07-25 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A9634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C3486A C3653T C14408T A23403G C25624T GGG28881AAC C29870A

EPI_ISL_526725
 2020-07-25 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2791/2020
 ATTAAAG1- C241T C1059T C3037T A3057G C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_526726
 2020-07-25 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2792/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T A3057G C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_526728
 2020-07-25 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2794/2020
 ATTAAAGGTTT1- C241T T2058A A2869G C3037T C12084T C12115T A13712G C14408T C21306T A23403G C25276A GGG28881AAC C29095T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_528750
 2020-07-25 2020-09-09
 Indonesia hCoV-19/Indonesia/JB-TFRIC19-R49542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4067T T7579C T11032G C14408T C15026T C18877T G18880T A22036C A23403G G25563T C26060T C26735T

EPI_ISL_528759
 2020-07-25 2020-09-09
 Indonesia hCoV-19/Indonesia/JB-TFRIC19-R49544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C4012T T9037C C14120T C14408T C18877T G21255C C21846T A23403G G23593T C25521T G25563T G26056T C26735T C29642T AAAA29900-

EPI_ISL_529529
 2020-07-25 2020-09-10
 United Kingdom hCoV-19/England/ALDP-97DEDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532607
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/England/QEUH-94378B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532631
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-9411AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T A19782R G21624T A23403G C26013G G27877T A28523G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532663
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89E9AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C11344T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532687
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-87CC03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532715
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-87EF35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532722
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/England/QEUH-885FE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATG518- C3037T C11379T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532731
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89523F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C7609T C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532732
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/England/QEUH-87D4CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532740
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/England/QEUH-87F15C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532780
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-87C82D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532792
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89A434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C11344T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532798
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8A8EEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T T7222A C14408T G16700T A23403G C27429Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532802
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/England/QEUH-896F37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T G2183A C3037T G6717A A9433T T9668C G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532809
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/England/QEUH-884D8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11985Y C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532813
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/England/QEUH-899383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532815
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/England/QEUH-892E89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532825
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/England/QEUH-896B33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C11344T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532827
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-87CACD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532828
 2020-07-25 2020-09-11
 United Kingdom hCoV-19/England/QEUH-87F408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540449
 2020-07-25 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174T C241T C3037T C4052A C4345T C10029T C10449T C11956T C14408T T19839C C21646T A23403G C25708T C26846T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540453
 2020-07-25 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1758T C3037T G4510A C14408T G15438T T21973C A23403G G25785T GGG28881AAC G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540466
 2020-07-25 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T A6659G C11345T G12191T G13249T C13261T C14408T C15654T T16479C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547675
 2020-07-25 2020-09-24
 United States hCoV-19/USA/WI-GMF-M00024/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T T1592C C2416T C3037T C6113T C14408T T16530A G21372T A23403G G25563T C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548524
 2020-07-25 2020-09-26
 United States hCoV-19/USA/CA-CZB-3922/2020
 AT1-K C241T C3037T A6716G C9836Y G11596T C14408T C21575Y A23403G GGG28881AAC G29781T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_548535
 2020-07-25 2020-09-26
 United States hCoV-19/USA/CA-CZB-3923/2020
 T10Y C241T T1947Y C3037T C3695T C14408T C18877T C22444T A23403G G23593T C23638T G25563T C26735T C28854T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_548537
 2020-07-25 2020-09-26
 United States hCoV-19/USA/CA-CZB-3925/2020
 ATTA1- T209W C241T C3037T C13862T C14408T A20268G C20759T A23403G T24076C C25989T G28580A C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_550479
 2020-07-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-97794C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820T C3037T T7258C T8941C G12911A C12919T C14408T G15438T A20268G A23403G T25039Y C29485T G29715T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550506
 2020-07-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-97788B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C853T C3037T C5482T C6936T C14408T G17944T G18186T C18747T A22182G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550507
 2020-07-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-97787C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18570T C21637T A23403G A28169G GGG28881AAC A29242G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556012
 2020-07-25 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9499E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T A11934R C14408T C17304T C18998T A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556022
 2020-07-25 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948CC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C98T C241T C1960T C3037T T8761A G10097A G13993T C14408T G17122T G18960T A23403G G24757T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556047
 2020-07-25 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948E27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815T C3037T C6636T G10097A G11906C A12180G C14408T A19228G A23403G C23731T C26198T C26645T G28580T C28720T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556318
 2020-07-25 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B4E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C98T C241T C1960T C3037T T8761A G10097A G13993T C14408T G17122T G18960T A23403G G24757T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556321
 2020-07-25 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949CFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29315K G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556338
 2020-07-25 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B6FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556482
 2020-07-25 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B6D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C6606Y C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556509
 2020-07-25 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94AD37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815T C3037T C6636T G10097A G11906C A12180G C14408T A19228G A23403G C23731T C26198T C26645T G28580T C28720T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556535
 2020-07-25 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T A5302T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556855
 2020-07-25 2020-09-28
 United Kingdom hCoV-19/England/CAMC-941A75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26326T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556910
 2020-07-25 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94328A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1094C C3037T C3429T G8578T C8917T A10720G C14408T G17280T C18129T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560412
 2020-07-25 2020-09-29
 Czech Republic hCoV-19/Czech Republic/NRL-8125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T C17518T A23403G G23438T GGG28881AAC C29095T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_561041
 2020-07-25 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7195T C9891T C14408T C21736T A23403G G25563T C29537T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561160
 2020-07-25 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C12469T C14408T A23403G C27765T GGG28881AAC C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561162
 2020-07-25 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C12469T C14408T A23403G C27765T GGG28881AAC C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561164
 2020-07-25 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12534T C13694T C14408T G20237A G21778A A23403G C28310T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561165
 2020-07-25 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T C19903T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561166
 2020-07-25 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3547C C4551T G5044A C14120T C14408T C15324T T17364C A19476G A23403G T25467C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561167
 2020-07-25 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561168
 2020-07-25 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C12469T C14408T A23403G C27765T GGG28881AAC C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561291
 2020-07-25 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4174C C12534T C13694T C14408T G18703T G20237A G21778A A23403G C28310T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561293
 2020-07-25 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T G14430C C16887T A20268G G22706T A23403G C26735T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561294
 2020-07-25 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1065G C3037T C3373A C9561T C14408T C16575T C17939T A23403G A25882G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562656
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC14007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- G101R C241T AAGTCATTT686- A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562790
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC10093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T C22949Y G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563263
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C230Y C241T T592K A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26124Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563268
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T8431C C14408T G16647T C18555T G22992A G23401A A23403G C23635T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563281
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28093Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563284
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11176/2020
 ATTAAAGGTTTA1- C36S C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563293
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983T G22992A G23401A A23403G T27785C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563294
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C12924T C13252T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563430
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C2918T C3037T T7540C C14408T G16647T C18555T G22427K G22992A G23120K G23401A A23403G C24382Y G25049K C26873Y GGG28881AAC C29269T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563432
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563441
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563442
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G G27750C GGG28881AAC C29546T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563443
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3159Y C7162T T7540C C14408T G16647T C17410Y C18555T G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_563446
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7528T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563454
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T G18020R C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563471
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C2918T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29269T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563479
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563491
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563496
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC11778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C17825T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563546
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC12237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563556
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC12380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563583
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC12733/2020
 ATTAAAGGTTTA1- C21Y C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563646
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC13245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C4999T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563648
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC13271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563649
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC13279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C173Y C241T A1163T C3037T T7540C C14408T G16647T C18326T C18555T G22992A G23401A A23403G C27600Y GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563650
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC13282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C G14140T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563910
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC13987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564005
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T GT5743SY GG5765RS T7540C C14408T G16647T C18555T G22992A G23401A A23403G A24942W GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564007
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A4681G T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564008
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C23929Y C26058Y C27059T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564009
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T GT5743SY T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564010
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T GT5743SY T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G T26552C G28851T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564011
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G558K G660K G663K A1163T C3037T G3564K G7038K T7540C G10986K G11535K G12164K C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24557K G24933K GGG28881AAC G29779K G29781K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564012
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T10933W C14408T G16647T C18555T C22480T G22992A G23401A A23403G C25777T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564015
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564016
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T GT5743SY T7540C C13274Y C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564017
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26428T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564018
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564019
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T C15720T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_564020
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T5744Y T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29218T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_564023
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T GT5743SY T7540C C12439T C14408T T16491C G16647T C17850T C18555T A22080T G22992A G23401A A23403G C26469T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564024
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564025
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C A14355G C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A G27666A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564026
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564027
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T C3267T T7540C C14408T G15594T C15720T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564029
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564087
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_564088
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C482Y G558K A1163T G2036K C3037T G3564K G4505K G5924K T7540C G8790K G10521T C14408T G15769K G16647T C18555T G22899K G22992A G23401A A23403G G24933K GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564089
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G558K A1163T C3037T G3114T G5924K T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564090
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G558K A1163T C3037T G3564K GT5743SY T7540C G11083K C14408T G16647T C18555T G22336K G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564091
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T G18756T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564092
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564093
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G558K A1163T C3037T G3114T C3551Y G3564K G5375K GT5743SY G7038K T7540C G9141K G10986K G12164K C14408T G16647T C18555T C22480T G22899K G22992A G23401A A23403G G24933K C27059T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564094
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T G3259K T7540C C9228Y C14408T T16491C G16647T C17850T C18555T A21137R G22992A G23401A A23403G A28877W GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564095
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6936T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G28557T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_564097
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T GT5743SY T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_564098
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564099
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564104
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T C5115Y GT5743SY T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564105
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22026K G22992A G23401A A23403G T27531Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564106
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC6868/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C9603T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564202
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC7034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G558K G660K G663K G1018K A1163T G2036K G2247K G2250K C3037T G3191K G3251K G3564K G3815K G5375K C6468Y G6483K G7038K T7540C G7805R G10266K G10986K G11392K G11535K G12164K G14277K C14408T G15769K G16647T G17096K G17849K C18138M G18297K C18555T G22018K C22419B G22899K G22992A G23401A A23403G G24557K G24933K G28079K G28559K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564272
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC7191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C17550Y C18555T G22992A G23401A A23403G C26326T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564299
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC7232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564300
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC7233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T A18760R G22992A G23401A A23403G G26526T G28845T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564336
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC7306/2020
 ATTAAAGGT1- C241T A1163T C3037T C4090Y C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25517Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564337
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC7308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564399
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC7423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2510R C3037T T7540C C13883Y C14408T G16647T C17649T C18555T G22992A G23401A A23403G G27382C GGG28881AAC C29409Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564509
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC7578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T C15720T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564511
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC7581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564512
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC7582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T C19813M G22992A G23401A A23403G GGG28881AAC T29128Y ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564513
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC7583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564525
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC7609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G14140T C14408T G16647T C18555T G22992A G23401A A23403G C28720T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564571
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC7678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66Y C241T A1163T C3037T A4681R T7540C C14408T G15594K T16491Y G16647T C17850Y C18555T G22992A G23401A A23403G T27785Y GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564630
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC7754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16887Y C18555T G22992A G23401A A23403G T28026Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565259
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC8883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T G28845T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565260
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC8884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565261
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC8885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C10377Y C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565345
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC8995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565346
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC8996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25617R GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565708
 2020-07-25 2020-09-30
 Australia hCoV-19/Australia/VIC9777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T G386R A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_569618
 2020-07-25 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0010/2020
 ATTAAAGGTTT1- C241T C482T G1312T C3037T T6334C C6627T A7676G C8367T C14408T A21405T A23403G T25929G C27002T C27972T G28300T G28883A A28998G G29777T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_512036 LR882305
 2020-07-26 2020-08-10
 Switzerland 220067
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T C3037T A3058M G3062K T3095C A3105R T3700Y G5513K A5522W A5563R G10265A C12880T C14408T A15972G C19718T C20629Y A23403G C23896T G28077T C28603T T28759Y GGG28881AAC G29692K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512037 LR882314
 2020-07-26 2020-08-10
 Switzerland 220068
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C337Y C3037T T7021Y T7034Y G9130T C14408T C16887T A23403G T27319C G28487A C28849T C28868T GGG28881AAC G29468T C29632T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512038 LR882313
 2020-07-26 2020-08-10
 Switzerland 220069
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G9130T C14408T C21595T A23403G T27319C C27323Y G28487A C28868T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512040 LR882315
 2020-07-26 2020-08-10
 Switzerland 220071
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C274T C313T C3037T T8082C C9286T C14408T C19763T A23403G C28732T GGG28881AAC G29260T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512513
 2020-07-26 2020-08-11
 United Kingdom hCoV-19/Wales/PHWC-1697C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC G29747K

EPI_ISL_516490 MT929016
 2020-07-26 2020-08-21
 United States SARS-CoV-2/human/USA/IL-UW-1064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G4520T A6442G T6934C C12374T C14408T C14786T T15624C A23403G G25563T C25904T C27964T C28099T C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516499 MT929025
 2020-07-26 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1550A C3037T A5718T C14408T C15240T A19899T C20956A A21464G A23403G A23899T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516504 MT929030
 2020-07-26 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8389T C14408T A20268G C21178T A23403G G26558A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516527 MT929052
 2020-07-26 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1407G C3037T C5183T A10323G C13255T C14408T T15276A C16293T G17562T C17939T A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518002
 2020-07-26 2020-08-25
 Singapore hCoV-19/Singapore/838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A3951G C6310A C6312A G11083T C13730T T16542C G17427T C18894T C19524T C23929T C28311T G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518003
 2020-07-26 2020-08-25
 Singapore hCoV-19/Singapore/839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310A C6312A G9500A C10002T G11083T G13004A C13730T T16542C G17427T C18894T C19524T C23029T C23929T A25958G C28311T G28899C G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518096 MT972085
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G6922A T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G T25518A GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_518097 MT972086
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6059/2020
 ATTA1- C241T A1163T C3037T G6922A T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G T25518A C28603T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518256 MT971881
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T GTTATG515- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518257 MT971882
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22210T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518258 MT971883
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204A C241T A1163T C3037T T7540C C14408T G16647T C17649T C18555T G22992A G23401A A23403G T28705C GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_518259 MT971884
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17649T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518267 MT971893
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518268 MT971894
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1572T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_518307 MT971908
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204A C241T A1163T C3037T T7540C C14408T G16647T C17649T C18555T G22992A G23401A A23403G T28705C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518308 MT971909
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518309 MT971910
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518313 MT971939
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518326 MT971954
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521270 MT973291
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22000A G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_521274 MT973292
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_521278 MT971798
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6504/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19263T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521279 MT971827
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521280 MT971828
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_521281 MT971829
 2020-07-26 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22825C G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_523083
 2020-07-26 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-25-11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T5028A C7006T C14898T C17410T C21859T A22920T C26078T G26918A G27390T A29500G TAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29826-

EPI_ISL_523084
 2020-07-26 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-25-12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T5028A C14898T C17410T C21859T A22920T C26078T G27390T A29500G A29776T TAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29823-

EPI_ISL_523735
 2020-07-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T G12191T C14408T T16479C A23403G C25587T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_526393
 2020-07-26 2020-09-01
 United Kingdom hCoV-19/England/LIVE-A979B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C1912T C3037T G4180T G11083T C11195T C14408T A23403G A25003G A25596C GGG28881AAC

EPI_ISL_526727
 2020-07-26 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2793/2020
 ATTAAAGGTT1- C241T C1059T C3037T A3057G C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_529618
 2020-07-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-62682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G25775T C27807T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529619
 2020-07-26 2020-09-10
 United Kingdom hCoV-19/England/BIRM-62691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G25775T C27807T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532556
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943EE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532649
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-94129B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532654
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8845D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532660
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-880149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21711Y A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532674
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-8802A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A24782G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532676
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-8802BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532681
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-87DB41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A A10844G T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532696
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-8806E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A24782G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532700
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-881EC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18040K A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532712
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8B3909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G23868T G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532713
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89AF24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14322Y C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532725
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-87FC6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532726
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8845FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532750
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-887DB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2433T T2734C C3037T C10036T C14408T C16260T G18090A C21772T A23403G G25299T G25563T C25844T C28821A C28826T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532757
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-88255A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26801G G27703T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532760
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-87DD1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T T8524C G10097A T10992C C11001T G12191T C14408T C14688T A23403G C23731T A25201C C25714T C27999T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532772
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89971E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T C3037T G8371T G11083T C14408T C17746T G19962T C22477T A23403G G25563T C28005T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532775
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-883CCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T T7222A C14408T G16700T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532805
 2020-07-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-896210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540448
 2020-07-26 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20742C A23403G T27922C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540450
 2020-07-26 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541695
 2020-07-26 2020-09-23
 India hCoV-19/India/MH-NIV-136271/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T A3517G C5700A C14408T C20384T T20949C A23403G C23604A G28209C GGG28881AAC C29555T G29737T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_548495
 2020-07-26 2020-09-26
 United States hCoV-19/USA/CA-CZB-3926/2020
 ATTAAAGGTTTATAC1- C16S C241T C3037T C13432T C14408T C16952T C17550T T18083Y T18111C C18647T A23403G C23557Y T24289W GGG28881AAC G29736T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548501
 2020-07-26 2020-09-26
 United States hCoV-19/USA/CA-CZB-3944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTA1- C241T C1059T C3037T C3042T G4285T C9967T C12473T C14408T G19947A A23403G A23416T G25563T C27643T C27964T G28899T A29359R AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_548538
 2020-07-26 2020-09-26
 United States hCoV-19/USA/CA-CZB-3945/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C3042T C9967T G11083T C12473T C14408T G19947A A23403G A23416T G25563T C27643T C27964T G28899T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_548541
 2020-07-26 2020-09-26
 United States hCoV-19/USA/CA-CZB-3896/2020
 C241T C2245T G2272T A2806C C3037T C14408T C17439T A20268G A23403G C28854T C28915T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_548549
 2020-07-26 2020-09-26
 United States hCoV-19/USA/CA-CZB-3927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCAC1- C241T G347A C3037T C5239T C14408T G18149T A20268G A23403G T24076C C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_549092
 2020-07-26 2020-09-28
 Norway hCoV-19/Norway/2965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2939T C3037T C4752T G9130T C14408T A23403G T27319C G28487A C28868T GGG28881AAC A29478G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549103
 2020-07-26 2020-09-28
 Norway hCoV-19/Norway/2977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2939T C3037T C4752T G9130T C14408T A23403G T27319C G28487A C28868T GGG28881AAC A29478G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549107
 2020-07-26 2020-09-28
 Norway hCoV-19/Norway/2982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556351
 2020-07-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949F9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C5812T C7768T A8773G C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T C26469A G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556446
 2020-07-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556494
 2020-07-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94908A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C6629Y C7051T C7303T C8964T G11083T C11379T C14408T C18555Y A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556960
 2020-07-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9484AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A12130G C14408T T16374C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560600
 2020-07-26 2020-09-29
 France hCoV-19/France/BR8932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561304
 2020-07-26 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1065G C3037T C3373A C9561T C14408T C16575T A23403G G24586T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563279
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC11165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563290
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC11191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563424
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC11595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3817T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563455
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC11677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G G28851C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563503
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC11996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563506
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC12014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29367T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563511
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC12036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563514
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC12061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A802G A1163T C3037T T7540C T8670W C9198T G12793K C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563522
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC12100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26013T A26162G GGG28881AAC G29579A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563536
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC12183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563539
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC12209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C17738T C18555T A20707G G22992A G23401A A23403G A28100G GGG28881AAC G29044A C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563541
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC12214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22469W G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563581
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC12712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25455A GGG28881AAC C28961T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563708
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC13386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564013
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC6722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T T14448C G16647T C18555T C19317T G21255T G22992A G23401A A23403G T25655Y GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_564021
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC6739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564022
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC6740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G4285T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C25777T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564028
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC6749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23758Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564030
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC6753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C21110T G21853T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564042
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC6767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564100
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC6857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T GT5743SY GG5765RS T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_564101
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC6859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C A13711G C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564107
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC6869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564112
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC6879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564244
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC7124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22315C G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564290
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC7219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564293
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC7223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC C29250Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564296
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC7229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564297
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC7230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C1973T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564301
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC7234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564302
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC7235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G11083T C14408T G16647T C17649T C18555T G22992A G23401A A23403G T28705C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564303
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC7236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29409M ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564335
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC7305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G4908R C5020A T7540C C13458T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564338
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC7309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C13426T A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564339
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC7311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T C22347Y G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564362
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC7365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13426T A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564508
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC7576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C6033T T7540C C12053Y C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564570
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC7677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564676
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC7818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C C28310Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565144
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC8701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565146
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC8704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565149
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC8709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565150
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC8710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C17649T C18555T G22992A G23401A A23403G A26603R GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565151
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC8711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C1848Y C3037T T7540C T13701Y A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565152
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC8712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C G25055R GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565157
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC8721/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C9319Y C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565518
 2020-07-26 2020-09-30
 Australia hCoV-19/Australia/VIC9354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_569619
 2020-07-26 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0011/2020
 C241T C482T G1312T C3037T T6334C C6627T A7676G C8367T C14408T A21405T A23403G T25929G C27002T C27972T G28300T G28883A A28998G G29777T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_511998 LR882235
 2020-07-27 2020-08-10
 Switzerland 220011
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T519K G2927R A2932R G3004K C3018S C3037T T3073Y C3535Y T3657Y C4810T C5358Y A7548G G11029A G11893A C14408T T15900C A16210W A16278R T16312Y G16322R T20020W T20022Y G20134K A20153W C20233Y C22210T A23403G C27131T G28056A GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512000 LR882237
 2020-07-27 2020-08-10
 Switzerland 220016
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T C8619T G9130T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512001
 2020-07-27 2020-08-10
 Switzerland hCoV-19/Switzerland/220018_676_E11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T G9130T C10138Y C14408T C16111T A23403G G25523K T27319C G28346T G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512002 LR882233
 2020-07-27 2020-08-10
 Switzerland 220019
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G3053K C5055Y C8123Y G10265A C14408T C15720T A15972G A16210W A16218M C19718T C20384Y C22987T A23122M C23191T A23403G C26625T G26700T C26873Y T28019Y G28373T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512003 LR882234
 2020-07-27 2020-08-10
 Switzerland 220020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A642M C2156Y A2375R C2947M C3037T A3090W T3144K A3581W T5551W C5575Y C6696Y C6906Y C7162M G9017R T10050W T10076W G10265A C11530T C14408T A15972G G16381R G16416R G16975T C19718T C19884Y C23103M G23292R A23403G G24357S C25262Y A25859G G26634T C28486Y G28541S T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512004 LR882232
 2020-07-27 2020-08-10
 Switzerland 220021
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2679G C3037T T6998Y A7003W C11767Y G11842A A12759G C14408T G18292T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512005 LR882244
 2020-07-27 2020-08-10
 Switzerland 220022
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C106Y C241T C313T C2062T A2905W C2947Y C3037T T3070Y G6877T C6903M T8082C C9286T C13945T T13985K C14068Y C14408T C19763T C22687T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512011 LR882255
 2020-07-27 2020-08-10
 Switzerland 220028
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T G5230K C5512Y G9130T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512043 LR882327
 2020-07-27 2020-08-10
 Switzerland 220074
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T G9130T C9857Y C14408T C16111T C21639Y A23403G T27319C G28487A C28868T GGG28881AAC G29706T C29732T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512044 LR882329
 2020-07-27 2020-08-10
 Switzerland 220076
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A6911W G6986R G10265A C14408T C15720T A15972G C19718T C22987T C23191T A23403G G26700T G28373T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512045 LR882332
 2020-07-27 2020-08-10
 Switzerland 220077
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G9130T G11083T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512046 LR882325
 2020-07-27 2020-08-10
 Switzerland 220078
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3096S G9130T G11083T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512047 LR882333
 2020-07-27 2020-08-10
 Switzerland 220079
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T T568Y A605R C2940M C2973M C3037T A5563R T6897W C8637Y C14408T C18252T A23403G G23624T G28396R GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512048 LR882328
 2020-07-27 2020-08-10
 Switzerland 220080
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C878T C913Y A2905R C3037T T3615K T3648K G3689R C3738T G5515K A5533R A6946R G9130T C14408T C16111T G17513K A17530W T17566Y T17638Y A17646W G20292R A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512049 LR882340
 2020-07-27 2020-08-10
 Switzerland 220081
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C878T C913Y G2993S C3037T A3079M C3583Y C3738T A3744R G9130T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512066 MT940460
 2020-07-27 2020-08-10
 India SARS-CoV-2/human/IND/GBRC331/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G2518T C2836T C3037T G3638T G4255T C14408T C15495T C18877T C22444T G23311T A23403G G25563T C26735T C27219T G28739T C28854T G29427T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_512067 MT940461
 2020-07-27 2020-08-10
 India SARS-CoV-2/human/IND/GBRC332a/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1594T C2836T C3037T C5051T C14408T C18877T C22444T A23403G C23997T G25563T C26735T C28854T C29253T A29806C TAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29811-

EPI_ISL_512068 MT940462
 2020-07-27 2020-08-10
 India SARS-CoV-2/human/IND/GBRC332b/2020
 ATTAAAGGTTTATACCTTCC1- C241T C2836T C3037T C5051T C6040T C14408T C18877T C22444T A23403G G23663A C23997T G25563T C26735T C28854T A29806C TAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29811-

EPI_ISL_512069 MT940464
 2020-07-27 2020-08-10
 India SARS-CoV-2/human/IND/GBRC333/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G362A C2836T C3037T C14408T C18877T T21539C G21724T C22444T G22468T G22599C G23401T A23403G A23632C G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_512839
 2020-07-27 2020-08-12
 Singapore hCoV-19/Singapore/803/2020
 ATTAAAGGTTTATACC1- C241T C3037T C10186T C12528Y C14120T C14408T C18877T A23403G G23593T G25563T G26056T C26735T C29642T G29692T AAAAAAAAAAAA29892-

EPI_ISL_512840
 2020-07-27 2020-08-12
 Singapore hCoV-19/Singapore/804/2020
 ATTAAAGGTTTATA1- C241T C3037T C10186T C14120T C14408T C18877T A23403G G23593T G25563T G26056T C26735T C29642T G29692T AAAAAAAAAAAA29892-

EPI_ISL_514445
 2020-07-27 2020-08-17
 United Kingdom hCoV-19/England/CAMB-1B592C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1758T C3037T G4510A G9805T C14408T G15438T A23403G G25785T GGG28881AAC G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514578
 2020-07-27 2020-08-17
 United Kingdom hCoV-19/Wales/PHWC-169AD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T A489G C3037T T5465C G6387A C7423T T9657C C10626T C14408T T17497Y G21624T A23403G G24102A AA25800TT GGG28881AAC

EPI_ISL_515757
 2020-07-27 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002392/2020
 ATTAAAGGTTT1- C241T C3037T C10369T G11944A C14408T C15763T G16528T A23403G C23625T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515762
 2020-07-27 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002398/2020
 ATTAAAGG1- C241T C2232T C3037T C14408T C18501T A23403G C23625T G28178T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515769
 2020-07-27 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002405/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T C19813T C22675T A23403G GGG28881AAC G29449T A29600G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_516501 MT929027
 2020-07-27 2020-08-21
 United States SARS-CoV-2/human/USA/IL-UW-1075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T G2035T C2662T C3037T G7743T C11956T C12025T C14408T C14925T T19839C T20058C T22129G A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516502 MT929028
 2020-07-27 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516514 MT929039
 2020-07-27 2020-08-21
 United States SARS-CoV-2/human/USA/DC-UW-1089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1407G C3037T C5183T A10323G C13255T C14408T T15276A C16293T C17939T A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516517 MT929042
 2020-07-27 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G271T C1059T C3037T C7528T T13270C C14408T A23403G G25563T C28093T C28890T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516532
 2020-07-27 2020-08-21
 United States hCoV-19/USA/PN-UW-1107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516533 MT929058
 2020-07-27 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G2036T C3037T C11916T C14408T C16767T G23311T A23403G A23586G G25563T T28009C G29431T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516534
 2020-07-27 2020-08-21
 United States hCoV-19/USA/WI-UW-1109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C25350T G27396T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516537 MT929061
 2020-07-27 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516540
 2020-07-27 2020-08-21
 United States hCoV-19/USA/IL-UW-1115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516542 MT929066
 2020-07-27 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G G21898T A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516545 MT929069
 2020-07-27 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6631C C9665T C10078T C12049T C12880T T14248A C14408T C16274T G16741A C19185T A20268G G22225T A23403G C26464T G27327T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518236 MT972094
 2020-07-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29635T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_521282 MT971957
 2020-07-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521283 MT971958
 2020-07-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6509/2020
 ATTA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_521288 MT971959
 2020-07-27 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C1593T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_523536
 2020-07-27 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11222C C14408T C21621T A23403G G24620T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523537
 2020-07-27 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255A C14408T C21621T A23403G G28090T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525741
 2020-07-27 2020-09-01
 United States hCoV-19/USA/WA-S2751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T G11540T G13459T C14408T C18877T A23403G G25483A G25563T A28910T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_525742 MT946873
 2020-07-27 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2752/2020
 AT1- C241T C3037T G11540T G13459T C14408T C18877T A23403G G25483A G25563T A28910T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_525743
 2020-07-27 2020-09-01
 United States hCoV-19/USA/WA-S2753/2020
 ATTAAAGGTTTATAC1- C241T C1059T T1927C C3037T C10319T C14408T A18424G A18543G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_525744
 2020-07-27 2020-09-01
 United States hCoV-19/USA/WA-S2754/2020
 ATTAAAGGTTTAT1- C241T C3037T G11540T G13459T C14408T C18877T A23403G G25483A G25563T A28910T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_526030
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2258A C3037T A6441G C8140T A9204G C14408T A20268G A23403G C28854T C29445T

EPI_ISL_526031
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G293A C3037T C3487T C11308T C14408T T15264C C16332T C19170T A23403G C25791T C28854T C29614T

EPI_ISL_526032
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G293A C3037T C3487T C11308T C14408T T15264C C16332T C19170T A23403G C25791T C28854T C29614T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_526033
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G293A C3037T C3487T C11308T C14408T T15264C C16332T C19170T A23403G C25791T C28854T C29614T

EPI_ISL_526034
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2167T C3037T C14408T C22987T A23403G G26951T GGG28881AAC C29249T

EPI_ISL_526035
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2201A C3037T C5240T C14408T A20268G A23403G C28854T C29274A

EPI_ISL_526036
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11916T C14408T A23403G C25466T G25563T G28027T G29742T

EPI_ISL_526037
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2258A C3037T A6441G C8140T A9204G C14408T A20268G A23403G C28854T C29445T

EPI_ISL_526038
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G10345A C14408T C16260T T18435G A23403G G25563T C28821A

EPI_ISL_526039
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A14424G G18880T T19839C A23403G GGG28881AAC

EPI_ISL_526040
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10042G C14318T C14408T C16260T C16575T G22484T A23403G G24781T G25273T G25563T C28821A

EPI_ISL_526041
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G10345A C14408T C16260T T18435G A23403G G25563T C28821A

EPI_ISL_526043
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2167T C3037T C14408T C22326T C22987T A23403G G26951T GGG28881AAC C29249T

EPI_ISL_526044
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1093T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_526045
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T G293A C3037T C3487T C11308T C14408T T15264C C16332T C19170T A23403G C25791T C28854T C29614T

EPI_ISL_526046
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2167T C3037T C14408T C22987T A23403G G26951T GGG28881AAC C29249T

EPI_ISL_526047
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C2037T C3037T C9967T C10714T C14408T G15543T G16537T C19763T T22242C A23403G T25729C

EPI_ISL_526048
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1855/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C7735T C14408T C15024T C16260T C20429A A23403G G25563T C28821A

EPI_ISL_526049
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G10345A C14408T C16260T T18435G A23403G G24928T G25563T C28821A

EPI_ISL_526050
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T C8389T G9705T G11521A C14408T T22693C A23403G G25563T C27964T G28899A C29025T G29260T C29362T

EPI_ISL_526051
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8818T C14408T C15952T C16293T G18337T G20980A C21789T A23403G

EPI_ISL_526052
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4778G C11824T A13169G C14408T A18259G G18397A A20268G A23403G C28854T C28887T

EPI_ISL_526053
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A20268G A23403G C28854T C29274A

EPI_ISL_526069
 2020-07-27 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1135T C3037T G14316A C14408T A20268G C23277T A23403G G25352T C28854T C29144T

EPI_ISL_526109
 2020-07-27 2020-09-01
 United States hCoV-19/USA/WA-OHSU-1831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9489A C14408T A20268G A23403G C28854T C29274A

EPI_ISL_526401
 2020-07-27 2020-09-01
 United Kingdom hCoV-19/England/MILK-977B64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T ATC27038TAA GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526402
 2020-07-27 2020-09-01
 United Kingdom hCoV-19/England/MILK-977DAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526403
 2020-07-27 2020-09-01
 United Kingdom hCoV-19/England/MILK-977DC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526729
 2020-07-27 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2795/2020
 ATTAAAGGT1- C241T C1059T C3037T A3057G C11916T C14408T C15352T C16650T A20675T A23403G G25563T C28087T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAA29881-

EPI_ISL_526730
 2020-07-27 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T T2058A A2869G C3037T C12115T A13712G C14408T C21306T A23403G C25276A GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526731
 2020-07-27 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T A3057G C11916T C14408T C15352T C16650T A20675T A23403G G25563T G29179T G29779T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_526732
 2020-07-27 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2798/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T A3057G T4051C C11916T C14408T C16650T A20675T A23403G G25563T G27870T G29179T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_526733
 2020-07-27 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2799/2020
 A1G C241T C1059T C3037T C11916T C14408T C16650T G18027T A20675T A23403G G25563T G29179T G29755T G29779T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_527063
 2020-07-27 2020-09-03
 Australia hCoV-19/Australia/NSW2616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G15535T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527601 MT958233
 2020-07-27 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1536/2020
 ATTA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528646
 2020-07-27 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1221/2020
 ATTAAAGGTTTATACCT1- C241T C1441T C3037T C14408T C18486T A20268G T22162C A23403G C24358A C28854T C29870A

EPI_ISL_528647
 2020-07-27 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C24358A C28854T

EPI_ISL_528648
 2020-07-27 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1224/2020
 ATTA1- C241T C1059T C3037T C4423T C14408T A23403G G25563T C25658T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_529621
 2020-07-27 2020-09-10
 United Kingdom hCoV-19/England/BIRM-62707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C4815T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530240
 2020-07-27 2020-09-11
 Australia hCoV-19/Australia/QLD957/2020/P1
 ATTAAAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_532545
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943EB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2250T C3037T C9207T C14408T G17544T G17794K C17913T G22346T A23403G G27709T C28093T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532586
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943ED1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T C3330T C6310T A6862G C9286T C14178T C14408T A18221G C19763T C21575T A23403G GGG28881AAC C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532613
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-94379A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3403T A6308C C14408T T19839C TGG21294AAA A23403G G25793T C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532632
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-941125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3426T A9339G C14408T C14688T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532648
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9410FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G521R G940A C3037T A3327G A3569G C3695T A6211G A8659G C14408T C19488T A23403G C26527T T27221C C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532670
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-89B864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T G4474K A6211G A8659G C14408T C19488T A23403G C26527T T27221C C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532682
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89873D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G A5877G G10097A C11416T C14408T C15390T A20055G A23403G C23731T C24370T G25947T T28723C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532688
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89C2DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T A9472G G10097A C13536T C14408T A16474G T20614C A21137G C21658T A23403G C23731T C24912T C25413T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532690
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-88CEFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532694
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-88B287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T C16178Y A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532698
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-88ED65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A24782G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532702
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-894133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C C5622T A8040G C12651T C14408T G15602A G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532703
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-894C9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C7815T C8318A C10615T A10691G C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532736
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-897A35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G T27815C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532741
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-88E8CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A24782G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532742
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8953B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T GGG28881AAC C29545T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532743
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-88C8C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532746
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-88C08C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532747
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8A0AB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A82M C241T C313T T2377C C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532751
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8997A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G A5877G G10097A C11416T C14408T C15390T A20055G A23403G C23731T C24370T G25947T T28723C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532754
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-894AED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T T1606C C1884T C3037T C4002T G10097A T10936C C11704T C13536T C14408T G16558T C21952T A23403G C23731T GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532758
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-88F0D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532762
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-898560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T G2035T C3037T G8102T C14408T C18744T A18978G C21575Y A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532764
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8928F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G10688A G13240A C14408T C16332T C20389T T22282C A23403G C23683T C23731T C25782T G28048T G28580T GGG28881AAC C29514T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532766
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89966C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063T T1606C C1884T C3037T C4002T G10097A T10936C C11704T C13536T C14408T G16558T C21952T A23403G C23731T GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532769
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8A00BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T A9472G G10097A C13536T C14408T A16474G T20614C A21137G C21658T A23403G C23731T C24912T C25413T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532774
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89A601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532778
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-88D382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532784
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-88E415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C5100T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532797
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8A02AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T T2377C C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532799
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8970BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532803
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8930A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G10688A G13240A C14408T C16332T C20389T T22282C A23403G C23683T C23731T C25782T G28048T G28580T GGG28881AAC C29514T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532817
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-88CEDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532822
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-88DA9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T G19518T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532823
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-88D3CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532826
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-88AEFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A24782G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532829
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/England/QEUH-89A66B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18508T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532830
 2020-07-27 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-889F82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535498
 2020-07-27 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C10702T G11447A C14408T C20436T C21306T C22675T A23403G G28077T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535552
 2020-07-27 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002690/2020
 ATTA1- C241T C512T A2692T C3037T G5629T A7064G C8311T C12747T C14408T C21575T C22675T A23403G C25521T C26586T T27384C G27877T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535553
 2020-07-27 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002691/2020
 A1- C241T C3037T C6762T T12503C C14408T A23098G A23403G G25455T G25770T GGG28881AAC C29721T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_535554
 2020-07-27 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C6762T C12116T T12503C C14408T G19009T C19263T C19854T A23403G G25770T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535555
 2020-07-27 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002693/2020
 C241T C3037T C4002T G10097A C13536T T14345C C14408T G18292T A23403G C23731T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535556
 2020-07-27 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C583T C3037T A7064G C13059T C14408T C22675T A23403G T27384C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535557
 2020-07-27 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002696/2020
 C241T T809C C2395T C3037T C14408T A21137G A23403G C28005T GGG28881AAC C28896T AAAAAAAAAAA29893-

EPI_ISL_535558
 2020-07-27 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002697/2020
 ATTAAAGGT1- C241T C3037T C6312T C11003T C14408T C15951T C17642T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_538504
 2020-07-27 2020-09-17
 Indonesia hCoV-19/Indonesia/JK-NIHRD-MI41613/2020
 C241T C3037T T4054C G7798T T10351C G10870T C14408T C18877T A23403G G23522C C28253T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_540478
 2020-07-27 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T G20487T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540479
 2020-07-27 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2632T C3037T C3165T C5869T C7564T C8802T C14408T C19170T G19509A C19854T A23403G C24130T G25650T C26313T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540480
 2020-07-27 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T C11511T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC C29545A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540481
 2020-07-27 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9130T C14408T A23403G G25563T T27319C G28487A C28868T GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540482
 2020-07-27 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T C11511T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC C29545A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540484
 2020-07-27 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T G26062C C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540486
 2020-07-27 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540487
 2020-07-27 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T A3084G C3261T C14408T C14980T A15984T C20946T C22075T A23403G C27945T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540592
 2020-07-27 2020-09-21
 United Kingdom hCoV-19/England/LIVE-AAA28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G G25617T GGG28881AAC

EPI_ISL_540622
 2020-07-27 2020-09-21
 United Kingdom hCoV-19/England/LIVE-AAE95/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C1190T G2035T C3037T G8102T C14408T C18744T A18978G A23403G G25563T A29391G C29870A

EPI_ISL_541186
 2020-07-27 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1213/2020
 ATTA1- C241T C2416T C3037T T6791C C14408T C16616T C21207T A23403G G25563T C26885T C27603T C28887T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_541187
 2020-07-27 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1214/2020
 ATTAAAGGT1- C241T C1059T C3037T A3450G G8083A C10319T C14408T C14805T A18424G C21304T T21992C A23403G G25563T G25907T G27074T C27964T C28472T C28869T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_541188
 2020-07-27 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1215/2020
 AT1- C241T C1059T C3037T A3450G G8083A C10319T C14408T C14805T A18424G C21304T T21992C A23403G G25563T G25907T G27074T C27964T C28472T C28869T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_541189
 2020-07-27 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T7348C C14408T T22843C A23403G C25452T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_541191
 2020-07-27 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1218/2020
 AT1- C241T C1059T C2110T C3037T C6582T C10116T C14408T C16260T C17485T C20429T C22413T A23403G G25563T C26028T T28029C A28401G C28821A GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_541192
 2020-07-27 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1219/2020
 ATTA1- C241T C3037T C14408T C16000T G20750A T22843C A23403G C25452T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_541195
 2020-07-27 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1222/2020
 ATTA1- C241T C3037T C9443T C12141T C14408T T22843C A23403G C25680T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_541196
 2020-07-27 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1223/2020
 ATTA1- C241T C1479A C3037T C14408T T22843C A23403G C25680T G27628A GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_541336
 2020-07-27 2020-09-22
 Czech Republic hCoV-19/Czech Republic/NRL-7913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4181A A8628G C14408T G19086T C19955T G21974T A23403G GGG28881AAC C29119T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_541337
 2020-07-27 2020-09-22
 Czech Republic hCoV-19/Czech Republic/NRL-7915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4181A A8628G C14408T C16726T G19086T C19955T G21974T A23403G GGG28881AAC TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_541696
 2020-07-27 2020-09-23
 India hCoV-19/India/MH-NIV-137244/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C5700A A7024T C14408T C18252T A23403G C25075A T27422C C28153T GGG28881AAC G28899C A29491G G29690T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541699
 2020-07-27 2020-09-23
 India hCoV-19/India/MH-NIV-138100/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C13665T C14408T G20352T A21343G A23403G GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_545580
 2020-07-27 2020-09-24
 Czech Republic hCoV-19/Czech Republic/NRL_7917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3638T G5554T C13487T C14408T A23403G C24034T G28321T GGG28881AAC TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_545954
 2020-07-27 2020-09-24
 Czech Republic hCoV-19/Czech Republic/NRL_7918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5554T C14408T C21575T C22938A A23403G C24034T G25249T G26152T G28321T GGG28881AAC C29614T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_547435
 2020-07-27 2020-09-24
 United Kingdom hCoV-19/Gibraltar/203160595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C106T C241T C1063T C3037T GT5743SY G11851T C12053T C14408T C18828T T19452W C22680T A23403G A24369T G25088T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547642
 2020-07-27 2020-09-24
 United States hCoV-19/USA/WI-GMF-12532/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C934T C1059T G2782T C3037T G8179K T9070C C12132T A12390G C14408Y C18283T A23403G G25563T T28823C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547643
 2020-07-27 2020-09-24
 United States hCoV-19/USA/IA-GMF-12677/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A696C C3037T G3871T T3931C C6285T G13723T C14408T C17135T G19009T C19524T C20429T G22487S A23403G C28977T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547644
 2020-07-27 2020-09-24
 United States hCoV-19/USA/WI-GMF-12857/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T G2089A C3037T C14408T C15324T C16260T C21575T C21622T C22329Y A23403G G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548360
 2020-07-27 2020-09-26
 United States hCoV-19/USA/CA-CZB-3625/2020
 A1- G198T C241T T409C C2509T C3037T G12070T C14408T A18390G A20268G C21008T A23403G C28603T C28854T G29706T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_548365
 2020-07-27 2020-09-26
 United States hCoV-19/USA/CA-CZB-3627/2020
 ATTA1- C241T C1059T C3037T G10345A C14408T C16260T T18435G A23403G G25563T C28821A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_548370
 2020-07-27 2020-09-26
 United States hCoV-19/USA/CA-CZB-3626/2020
 ATTAAAGG1- T85K C203T C241T C1059T C2003T C3037T C3619Y G3955A A4229G T4684Y A5560G C5884T G6653A G10121A C13887T C14408T T15993C C16338Y G17014K A19736R A23403G G24410A G25563T G28975T A29833W TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_548383
 2020-07-27 2020-09-26
 United States hCoV-19/USA/CA-CZB-3754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCC1- C241T C3037T C14408T A20055G A20268G A23403G C28854T AGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAAT29735- GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_548492
 2020-07-27 2020-09-26
 United States hCoV-19/USA/CA-CZB-3946/2020
 ATTAAAGGTT1- C241T C1059T C3037T C3042T G4285T C9967T G11083T C12473Y C14408T C15579Y G19947A A23403G A23416T G25563T C27643T C27964T G28899T G29179K AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548502
 2020-07-27 2020-09-26
 United States hCoV-19/USA/CA-CZB-3904/2020
 T76W C241T C1059T C3018T C3037T G3328T A8252G C9360T C13536T C14408T G15543T G17523T T17773A C17999T A23299G A23403G G25311T G25563T T28078C G29227K TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_548504
 2020-07-27 2020-09-26
 United States hCoV-19/USA/CA-CZB-3908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCAC1- C203T C241T C1059T C2003T C3037T G3955A A4229G A5560G C5884T G6653A G10121A C13887T C14408T T15993C A23403G G24410A G25563T G28975T A29833W TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_549051
 2020-07-27 2020-09-28
 Norway hCoV-19/Norway/3168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6667A G9130T C14408T C17976T A23403G C25452T T27319C G28487A C28868T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549100
 2020-07-27 2020-09-28
 Norway hCoV-19/Norway/2974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550487
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-977D40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3403T A6308C C14408T T19839C TGG21294AAA A23403G G25793T C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550500
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-977DE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T A6659G G12191T C13261T C14408T T16479C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555868
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A T10414Y G14055K C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555948
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94A308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C4002T G10097A C13536T C14408T A23403G C23731T C24912T G25440T C27970T C28674T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555973
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94A2ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_555976
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94A1FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815T C3037T C6636T G10097A G11906C A12180G C14408T A19228G A23403G C23731T C26198T C26645T G28580T C28720T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556021
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94ACD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14408T A20268G C22997T A23403G A24532G C24865T G26951T C28849T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556026
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94AA4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T T16401C G16741T C17410T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556039
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-949828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1787G C3037T C6267T T9961C G10265A C14408T A15972G C16178T G19648T C19718T A23403G A25492G T26609C T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556058
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-948F06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556063
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9496A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T C22388T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556309
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94B5E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T T16401C G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556434
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94A7A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2250T C3037T C9207T C14408T G17544T C17913T G22346T A23403G G27709T C28093T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556508
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94A326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T T16401C G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556650
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-94C1FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556782
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9493FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_556868
 2020-07-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9427C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C11152T C14408T G18816T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560601
 2020-07-27 2020-09-29
 France hCoV-19/France/BR8933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18176T A20268G A23403G C25731T T28098C G28703C C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561042
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T G11083T C14408T A20268G G22706T A23403G G25906T A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561043
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561052
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C14408T A20268G A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561060
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5533G G10870T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561062
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1065G C3037T C3373A C9561T C10078T C14408T C16575T A23403G G24586T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561068
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C5284T C14408T C19313T A20268G G22226A G22706T A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561069
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C8650T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561070
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4174C C12534T C13694T C14408T G18703T G20237A G21778A A23403G C26895T C28310T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561071
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4174C C12534T C13694T C14408T G18703T G20237A G21778A A23403G C26895T C28310T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561073
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C10377T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561074
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561075
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C8650T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561076
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561077
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561079
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C14408T A20268G C21058T A23403G C25886T G28086T C28833T C29160T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561081
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4174C C12534T C13694T C14408T G20237A G21778A A23403G C24374T C28310T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561082
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C1625T G2591T C3037T C14408T C17125T A20268G C23202T A23403G C25886T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561083
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C5284T C14408T C19313T A20268G G22706T A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561084
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T A23403G G24620T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561085
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T A23403G G24368T G24620T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561087
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T A23403G G24368T G24620T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561088
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1495T C3037T T3547C C14120T C14408T G15243T C15324T G17964T A19476G A23403G T25467C G25621T G28083T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561090
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T809C C1392T C3037T C3373A A7347G C9561T C14408T G19006T C22096T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561091
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T A23403G G24620T G24872T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561093
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C13501T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561095
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T A23403G G24620T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561096
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T A23403G G24620T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561097
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C14408T A15979G C18877T A20268G A23403G C27527T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561098
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1298A C1625T C3037T C3653T A9085G C14408T A20268G A23403G C28833T G29553T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561099
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1514T C3037T C3373A C3743T C9561T C14408T C16575T A23403G G24368T G24620T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561100
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1514T C3037T C3373A C9561T C14408T C16575T A23403G G24368T G24620T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561102
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T809C C1392T C3037T C3373A G3403T C9561T C14408T G19006T C22096T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561170
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C12469T C14408T A23403G C27765T GGG28881AAC C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561172
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A G10870T C12469T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561173
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G C12469T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561174
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12534T C14408T G20237A G21778A A23403G C28310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561176
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4174C C12534T C13694T C14408T G21778A A23403G C24374T C28310T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561177
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561178
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C14408T A20268G A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561180
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G G26416A C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561181
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T T8613C C10377T C14408T A20268G G22706T A23403G C25452T A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561182
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561184
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G922A C1625T C3037T C11008T C14195T C14408T A20268G A23403G C25886T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561185
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C14408T A20268G A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561188
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561189
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561190
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561191
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T A2745G C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561193
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T A19779G A23403G GGG28881AAC AGT29746- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561194
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12534T C13694T C14408T G18703T G20237A G21778A A23403G C28310T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561195
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C3653T A9085G C14408T A20268G A23403G C28833T G29553T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561196
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1263T C1625T C3037T C14408T A20268G A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561197
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TGGTTG519- G1186A C1625T C3037T TAGTTT3343- C14408T A20268G G22706T A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561198
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C14408T A20268G A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561199
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G20356T G22706T A23403G A25974G C28311T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561200
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T A2745G C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561201
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561202
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/GC19-3659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A G10870T C12469T C14408T A23403G C27765T C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561295
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2810G C3037T C3373A C9561T C14408T C16575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561297
 2020-07-27 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12534T C13694T C14408T G20237A G21778A A23403G C28310T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562867
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC10318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G18651T TG22408WK G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563513
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC12039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5203T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29077Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563530
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC12157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563532
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC12168/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22410D G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563547
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC12240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C19007Y C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_563560
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC12407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C24579T GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_563564
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC12449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12439Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563568
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC12524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C7788T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563570
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC12535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T G3114T T7540C T11431Y C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_563626
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C4012T T7540C C9438T C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563629
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563659
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563661
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T G2281A C2488T C3037T T7540C C14408T G16647T C18555T C20737A C22480T G22992A G23401A A23403G T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563662
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_563673
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T T15570C G16647T C18555T C18568T G22992A G23401A A23403G C23457A G25500A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563683
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563688
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC C29421Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563691
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563692
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G21255C G22992A G23401A A23403G C23520Y C28725T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563695
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563697
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563698
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A C23320Y G23401A A23403G C23457A GGG28881AAC A29735W AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563700
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C18683T C22323T G22992A G23401A A23403G G24102C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563701
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C527T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563703
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7165T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563704
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T T18509G C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563705
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3564K T7540C G9249K C14408T G16647T C18129Y C18555T G22992A G23401A A23403G G24933K C25037M C26907Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563707
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C G11083K C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A G25500A GGG28881AAC C29523T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563711
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T3217Y T7540C C14408T G15594T G16647T C18555T G18973T C21005T G22992A G23401A A23403G C27920T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563715
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC A29735T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563719
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC13404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T C15371Y G16647T A17337G G17418R C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563921
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC14004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G526T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G G25599T GGG28881AAC C29272T C29546T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563992
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC6491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T GT5743SY GG5765RS T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29635T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563995
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC6513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563996
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC6514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564031
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC6755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T C18744Y G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564032
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC6756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A5607R T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564033
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC6757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564034
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC6758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C G11083K C14408T G16647T C18555T G22992A G23401A A23403G C26464A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564035
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC6759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T GT5743SY T7540C C14408T G16647T C18555T G22992A G23401A A23403G A24942W C26464A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564036
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC6760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C G13349R C14408T G16647T C18555T G22992A G23401A A23403G C25584Y C25820Y C26464A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564039
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC6763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26464A GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_564040
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC6764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26464A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564041
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC6765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26464A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564103
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC6865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T GT5743SY T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26464A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564108
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC6871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A4359R T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564111
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC6878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564217
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26464A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564245
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G45K C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564246
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C G11083K C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC T29821W TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564308
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564309
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564310
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A7519G T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564311
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T A17048C C18555T C22480T G22992A G23401A A23403G C25624Y C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564312
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C12183Y C14408T G16647T C18555T G22992A G23401A A23403G T27785Y GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_564313
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564314
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564315
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C G12661R C14408T G16647T C17762T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564316
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2227T C3037T G3259T T7540C G14055K C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564317
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564340
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564363
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T T1432C C3037T C5175Y T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564365
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564366
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C9319Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564367
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T G2944K C3037T A4681G T7540C C13458Y C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564522
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27484Y GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564523
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C12513T C14408T G16647T C18555T G22992A G23401A A23403G C25844Y GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564526
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T A1163T C3037T T7540C C14408T G15594K G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564527
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T A3752R T7540C C14408T G15594T G16647T C18555T A21014R G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564625
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564697
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A11862R C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564701
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564702
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T C26060Y T27785C GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_564709
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7859/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T A19614R G22992A G23401A A23403G C23707T T27785C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564711
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A4838R T7540C A14084G C14408T G16647T C18555T G21468K G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564712
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564713
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G174A C241T A1163T C3037T T7540C C11919Y A14084R C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564714
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6701T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G24977S T27785C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564717
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC7869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564999
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565012
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565013
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7056M T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565018
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565019
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C24579T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565020
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565024
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565025
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T T18509G C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565027
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21575Y G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565028
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3728K T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565029
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565030
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17745Y C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565031
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T GT5743SY T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565036
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C66T C241T A1163T G1462R C3037T GT5743SY T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C26882T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565037
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565038
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565039
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565043
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T490C A1163T C3037T C7600T G7798T C11931A C14408T T23031Y A23403G T23548C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565044
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565147
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565153
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G14584A G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565154
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T A1163T T1432C C3037T T7540C G14241T C14408T G16647T C18555T A19182R G22992A G23401A A23403G GGG28881AAC C29546T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565156
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C A12444R C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565158
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8728/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC C29200T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565159
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_565160
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3345A T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26873Y GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_565161
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565162
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565163
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19216Y G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565164
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565165
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G6922A T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_565166
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565169
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565171
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C T8871Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565220
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565221
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G28248R GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565222
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565252
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565302
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8948/2020
 ATTAAAGGTTTATACC1- A26W C241T A1163T C3037T G3114T C6040Y T7540C C7788Y C14408T G16647T C18555T C19983Y C22480T G22992A G23401A A23403G C27059T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565315
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC C29370T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565318
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29218T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565319
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C66T C241T A1163T C3037T C5822T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565320
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_565336
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T C4296T T7540C C8480T G10753R C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565338
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T G22365K C22480T G22992A G23401A A23403G C27059T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565339
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T C4296T T7540C C8480T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565340
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565341
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C13115Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565343
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2094Y C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565344
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T8431Y C14408T G16647T C18555T G22992A G23401A A23403G C23635Y GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_565347
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A6512R T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_565348
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC8998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T C15714T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_565364
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC9032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565695
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC9758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29347T G29692T G29777T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565714
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC9785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24138Y A26162G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565723
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC9798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565793
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC9944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565802
 2020-07-27 2020-09-30
 Australia hCoV-19/Australia/VIC9956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568570
 2020-07-27 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T T4346C C9286T C10376T C14408T C14708T T22020C A23403G C28725T GGG28881AAC G29692K TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_568617
 2020-07-27 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1519/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C313T C3037T A6371G G9526T C14408T A21405G A23403G C26895T GGG28881AAC G29554T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_569027
 2020-07-27 2020-10-02
 France hCoV-19/France/IHU-0980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G C22088T G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569028
 2020-07-27 2020-10-02
 France hCoV-19/France/IHU-0981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1912T C3037T G5210A C14408T C15324T C17470T C21191T A23148G A23403G T27125C C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT929057
 2020-07-27 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT929064
 2020-07-27 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT947551
 2020-07-27 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2753/2020
 ATTAAAGGTTTATAC1- C241T C1059T T1927C C3037T C10319T C14408T A18424G A18543G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT947582
 2020-07-27 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2754/2020
 ATTAAAGGTTTAT1- C241T C3037T G11540T G13459T C14408T C18877T A23403G G25483A G25563T A28910T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT947588
 2020-07-27 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T G11540T G13459T C14408T C18877T A23403G G25483A G25563T A28910T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MW023447
 2020-07-27 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1213/2020
 ATTA1- C241T C2416T C3037T T6791C C14408T C16616T C21207T A23403G G25563T C26885T C27603T C28887T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MW023448
 2020-07-27 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1214/2020
 ATTAAAGGT1- C241T C1059T C3037T A3450G G8083A C10319T C14408T C14805T A18424G C21304T T21992C A23403G G25563T G25907T G27074T C27964T C28472T C28869T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

MW023449
 2020-07-27 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1215/2020
 AT1- C241T C1059T C3037T A3450G G8083A C10319T C14408T C14805T A18424G C21304T T21992C A23403G G25563T G25907T G27074T C27964T C28472T C28869T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MW023450
 2020-07-27 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T7348C C14408T T22843C A23403G C25452T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MW023452
 2020-07-27 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1218/2020
 AT1- C241T C1059T C2110T C3037T C6582T C10116T C14408T C16260T C17485T C20429T C22413T A23403G G25563T C26028T T28029C A28401G C28821A GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

MW023453
 2020-07-27 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1219/2020
 ATTA1- C241T C3037T C14408T C16000T G20750A T22843C A23403G C25452T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

MW023456
 2020-07-27 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1222/2020
 ATTA1- C241T C3037T C9443T C12141T C14408T T22843C A23403G C25680T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MW023457
 2020-07-27 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1223/2020
 ATTA1- C241T C1479A C3037T C14408T T22843C A23403G C25680T G27628A GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_508606
 2020-07-28 2020-08-04
 Australia hCoV-19/Australia/SAP473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G18973T C21005T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_512006
 2020-07-28 2020-08-10
 Switzerland hCoV-19/Switzerland/220023_680_D02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T2912W T2943W C3037T G3114S A3121W T3144K C3738T C3747Y G9130T C14408T C16111T A23403G C23424T T27319C G28346T G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512009 LR882258
 2020-07-28 2020-08-10
 Switzerland 220026
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C1912T C3037T G5018A C9286T C10252T C14178T C14408T C19763T A23403G C23683T C28846Y GGG28881AAC C29835T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512010 LR882253
 2020-07-28 2020-08-10
 Switzerland 220027
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G524R C3037T C3738T T6913K G9130T C10252Y C14408T C16111T A22135G A23403G G25599K T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512012 LR882256
 2020-07-28 2020-08-10
 Switzerland 220029
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C274T C313T C412Y A513R C622M A642M C2299Y C3037T T3144K T3748Y A3754R G5075K T5263Y A5325R T5349Y G5425R C5497M T8082C C9286T C14408T A16210W C17465Y C19763T C20307Y C20429T C20767Y G21867K A23403G G25769R C28732T GGG28881AAC G29260T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512013 LR882248
 2020-07-28 2020-08-10
 Switzerland 220030
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2570T C3037T C6578T G10631A C12559T C14408T C15324T G16900A T20757Y A22013G C22227Y A23403G C27765T C28893T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512050 LR882344
 2020-07-28 2020-08-10
 Switzerland 220084
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1495T C1929T A2679G C3037T G11842A A12759G C14408T G18292T A20268G T21075W A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512051 LR882343
 2020-07-28 2020-08-10
 Switzerland 220085
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6285T G9130T C14408T C15720T G15921T C16111T G21123T T21458C A23403G C24370T G24757T C25844T T27319C G28487A G28541A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512052 LR882347
 2020-07-28 2020-08-10
 Switzerland 220087
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C3817T G4160K C6286T C7139M C13665Y C14408T C19017T G22225K C22227T A23403G C25665Y C26801G C28932T G29645T G29711T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512053 LR882352
 2020-07-28 2020-08-10
 Switzerland 220088
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C832Y C2918M C3037T T3110W T3136K A3542R G3570R T3730Y C3738T C5512Y T5514Y G9130T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T C29732T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512054 LR882350
 2020-07-28 2020-08-10
 Switzerland 220089
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A6930M G9130T G11083T C14408T C14697Y C16111T C21478G A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514343
 2020-07-28 2020-08-17
 United Kingdom hCoV-19/England/203290059/2020
 ATTAAAGGTTTATACC1- C36T C241T C274T C2062T A2810G C3037T C6395T A10317G A12410G C14408T C16323T A18366G C18788T T19839C T21093C A23403G C25703T C27577Y GGG28881AAC CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_514571
 2020-07-28 2020-08-17
 United Kingdom hCoV-19/Wales/PHWC-169A60/2020
 ATTAAAGGTTT1- C241T C3037T T3049C C14408T G21624T A23403G T25580C C26013G G27877T A28523G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_514573
 2020-07-28 2020-08-17
 United Kingdom hCoV-19/Wales/PHWC-169A8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C G9526K C14408T G21624T A23403G G27877T A28523G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_515758
 2020-07-28 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515760
 2020-07-28 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C534T C3037T G3728T T5653C A7064G A10323G C14408T C22675T A23403G C25521T C26586T C26907T T27384C GGG28881AAC C29445T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_516505 MT929031
 2020-07-28 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T T17751G A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T C29614T T29760C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516507 MT929033
 2020-07-28 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516516 MT929041
 2020-07-28 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516525 MT929050
 2020-07-28 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T T15870G C21431T A23403G G24199T A28702G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516535 MT929059
 2020-07-28 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C12357T G14316T C14408T T19839C C21928T A23403G C23707T T24631C C26110T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516541 MT929065
 2020-07-28 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C11003T C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516543 MT929067
 2020-07-28 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G1957T C2623T C3037T C11916T C14408T A23403G A23586G G25563T ACGATCG29749- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517593
 2020-07-28 2020-08-24
 United Kingdom hCoV-19/Wales/PHWC-169B30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2110T C3037T C5055T G11851T C14408T C14786T T20499C A23403G G24812T CC26894YT GGG28881AAC G29717A

EPI_ISL_521284 MT972087
 2020-07-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T TGTTTA21988- C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521285 MT972088
 2020-07-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_521287 MT972090
 2020-07-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T G1495T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521289 MT972091
 2020-07-28 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521290
 2020-07-28 2020-08-25
 Australia hCoV-19/Australia/VIC6519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G C26044T GGG28881AAC

EPI_ISL_525352
 2020-07-28 2020-08-29
 Ireland hCoV-19/Ireland/71IRL93650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525746
 2020-07-28 2020-09-01
 United States hCoV-19/USA/WA-S2756/2020
 ATTAAAGGTTTATA1- C241T C3037T A5101G A12358T C14408T G18803T A22606G A23403G G25922T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_525747
 2020-07-28 2020-09-01
 United States hCoV-19/USA/WA-S2757/2020
 ATTAAAGGTTTATACC1- C241T G2001A C3037T C14408T A18774G T19839C C20148T A23403G GGG28881AAC C29784T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_525748
 2020-07-28 2020-09-01
 United States hCoV-19/USA/WA-S2758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T G2001A C3037T C14178T C14408T A18774G T19839C C20148T A23403G GGG28881AAC C29784T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_525749
 2020-07-28 2020-09-01
 United States hCoV-19/USA/WA-S2759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T G2001A C3037T C14408T A18774G T19839C C20148T A23403G G24872T GGG28881AAC C29784T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_526054
 2020-07-28 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8729A C14408T A17858G G20980A A23403G G24751T

EPI_ISL_526055
 2020-07-28 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8818T G12565T C14408T C15952T G18337T G20980A C21789T A23403G TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_526056
 2020-07-28 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1514T C3037T C8078T A8998C C14408T G19072T A23403G G25563T A28870T

EPI_ISL_526057
 2020-07-28 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G598T C3037T C5835T C6936T C9803T A10918G T11142C C14408T T16521C T19839C A23403G A23756G C25487T GGG28881AAC C29421T G29751T

EPI_ISL_526058
 2020-07-28 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1927C C3037T C3990T G7756T C10319T C14408T A18424G C21304T C21727T A22255T A23403G G25563T G25907T C27964T C28472T C28869T

EPI_ISL_526059
 2020-07-28 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6441G C8140T A9204G C14408T A20268G A23403G C28854T C29445T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_526060
 2020-07-28 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G598T C3037T C5835T C6936T T11142C C14408T T16521C T19839C A23403G A23756G C25487T GGG28881AAC C29421T G29751T

EPI_ISL_526061
 2020-07-28 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C900T C1059T C3037T C4084T C14408T C16260T G23311T A23403G G25563T C28821A

EPI_ISL_526063
 2020-07-28 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C22987T A23403G G26951T GGG28881AAC C29249T

EPI_ISL_526064
 2020-07-28 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2334T C3037T G4444A C8917T C12116T C14408T T19839C G20569T A23403G GGG28881AAC

EPI_ISL_526065
 2020-07-28 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2258A C3037T A6441G C8140T A9204G C14408T A20268G A23403G C28854T C29445T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_526067
 2020-07-28 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4423T A12199G C14408T C14877T C15933T G16968T T19839C A23403G T23986C C26461A T28187C GGG28881AAC

EPI_ISL_526068
 2020-07-28 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1913/2020
 ATTAAAGGTTT1- C241T C1059T A2580T C3037T C3602T C14408T C16762T G17334T G18379T A23403G G25563T G26834T C27513T G29543A

EPI_ISL_526110
 2020-07-28 2020-09-01
 United States hCoV-19/USA/WA-OHSU-1909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1236G G1685A C3037T G11083T C14408T A20268G T21722C A23403G T25694C C28854T

EPI_ISL_526734
 2020-07-28 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T T2058A A2869G C3037T C12115T C13343T A13712G C14408T C21306T A23403G C25276A GGG28881AAC C29095T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_528649
 2020-07-28 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1385T G1738T C3037T A3051G G3242A C5806T C11916T C12559T C14408T C20703T A23403G G25563T C28087T G29332T

EPI_ISL_529561
 2020-07-28 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9846AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529562
 2020-07-28 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9846BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529563
 2020-07-28 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9846CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529564
 2020-07-28 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9846DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529565
 2020-07-28 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9846EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529566
 2020-07-28 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9846FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G G24095T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529582
 2020-07-28 2020-09-10
 United Kingdom hCoV-19/England/ALDP-987E2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1470A T1910G G2477A C3037T T7198C C8311T G10097A A10323G C11653T A11991G T12184C C14408T C16954T A17615G G18859T T20482G G22638A A23403G C23731T C25000T C27879T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529583
 2020-07-28 2020-09-10
 United Kingdom hCoV-19/England/ALDP-987E3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529585
 2020-07-28 2020-09-10
 United Kingdom hCoV-19/England/ALDP-987EB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529586
 2020-07-28 2020-09-10
 United Kingdom hCoV-19/England/ALDP-987ED1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532553
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943E2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C8660T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532555
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-943DA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532565
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943ADD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532570
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943A19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532575
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-943DC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532577
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943E68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T G15646T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532591
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G5950T A9750G G10097A C13536T C14408T G19732T G20931T G21220T A23403G C23731T GGG28881AAC C29733T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532592
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943E59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T T8524C G10097A T10992C C11001T G12191T C14408T C14688T A23403G C23731T A25201C C25714T C27999T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532614
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-943D98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532625
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9437B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C5100T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532628
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943E1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C8660T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532697
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-89DB2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C5100T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532708
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8865ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1699G C3037T C5339T C10319T C11750T T11974C A12180G C12559T C14408T C19488T TTA20423- A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532733
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-89E46D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C5100T C7051T C7303T C8964T C11074T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532738
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-89E6D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C5100T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532744
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-895967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C999T C1912T C3037T G4180T C4683T T10453C C11195T G13348T C14408T G14866A C21811T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532753
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-8937D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1190T T1947C C3037T G4300T G5017A G11083T C14408T C18877T C21219T C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532755
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-899FDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C5100T C7051T C7303T C8964T C10252T G11083T C14408T G19656T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532767
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-89DD18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C5100T C7051T C7303T C8964T G11083T C14408T T21153C A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532811
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-89C0D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532812
 2020-07-28 2020-09-11
 United Kingdom hCoV-19/England/QEUH-897622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C G3692T C14408T G16914T A23403G A27400G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534246
 2020-07-28 2020-09-11
 Sweden hCoV-19/Sweden/20-52455/2020/P1
 C241T C1625T G2173A C3037T G6352T C14408T A21137G C21622T G22199T A23403G A25067T C25499T C26013T G28373T GGG28881AAC A29700G

EPI_ISL_534247
 2020-07-28 2020-09-11
 Sweden hCoV-19/Sweden/20-52462/2020/P1
 C241T C3037T G7791A C10851T C14408T C21952T A23403G GGG28881AAC

EPI_ISL_535441
 2020-07-28 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G11447A C14408T C22675T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_535456
 2020-07-28 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002591/2020
 C241T C3037T C4084T T5422C C7051T G7743T C12439T C12880T C14408T A20268G A23403G C26600T C26822T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_535459
 2020-07-28 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T G709A C3037T T7012A C8092T C14408T C19402T A23403G G24095T G28326T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535477
 2020-07-28 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002613/2020
 ATTA1- C241T C3037T G3496T T5422C C7051T G7743T C12880T C14408T G15907T C19185T A20268G A23403G A25497G C28291T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536978
 2020-07-28 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961DC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4927T C5183T A8072G C14408T A23403G G25166C G25555T GGGGAACTT28881- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539885
 2020-07-28 2020-09-21
 Sweden hCoV-19/Sweden/20-52453/2020
 C241T C3037T C7267T C9120T C11416T C14408T C18032T C20233T A23403G G24926T A27674T GGG28881AAC A29350G

EPI_ISL_540618
 2020-07-28 2020-09-21
 United Kingdom hCoV-19/England/LIVE-AAE0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T A1699G C3037T C4886T C5339T C10319T C11750T T11974C A12180G C12559T C14408T C19488T TTA20423- A23403G GGG28881AAC C29870A

EPI_ISL_540619
 2020-07-28 2020-09-21
 United Kingdom hCoV-19/England/LIVE-AAE1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C1190T C3037T G8102T C14408T A15077G G15836T A17219M C18744T A18978G A23403G G25471A G25563T A29391G C29870A

EPI_ISL_540623
 2020-07-28 2020-09-21
 United Kingdom hCoV-19/England/LIVE-AAEA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3163C G3692T C14408T A23403G A27400G GGG28881AAC C29870A

EPI_ISL_540624
 2020-07-28 2020-09-21
 United Kingdom hCoV-19/England/LIVE-AAF47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T A1699G C3037T C5339T C10319T C11750T T11974C A12180G C12559T C14408T C19488T TTA20423- A23403G GGG28881AAC C29870A

EPI_ISL_545956
 2020-07-28 2020-09-24
 Czech Republic hCoV-19/Czech Republic/NRL_7942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5554T C14408T C21575T C22938A A23403G C24034T G25249T G26152T G28321T GGG28881AAC C29614T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_545957
 2020-07-28 2020-09-24
 Czech Republic hCoV-19/Czech Republic/NRL-7944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5554T C14408T C21575T C22938A A23403G C24034T G25249T G26152T G28321T GGG28881AAC C29614T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_547646
 2020-07-28 2020-09-24
 United States hCoV-19/USA/WI-GMF-12925/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A3344G C3773T G6367T C7764T C9521T T14191C C14408T C16260T A23403G A24253T G24386T G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547648
 2020-07-28 2020-09-24
 United States hCoV-19/USA/WI-GMF-12945/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C715T C1059T G2036T G2305T C3037T C7735T C11916T C14408T G23311T A23403G A23586G G25563T C29109A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548491
 2020-07-28 2020-09-26
 United States hCoV-19/USA/CA-CZB-3928/2020
 ATT1- C203T C241T C900T C1059T C3037T C14408T C16260T C18511Y G23311T A23403G G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548505
 2020-07-28 2020-09-26
 United States hCoV-19/USA/CA-CZB-3953/2020
 ATT1- C241T C3037T C4582T G5378T G6536T C13119T C14408T G15982T C16092T A20268G G21608T A23403G C24374A G26466T C29353Y GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_548513
 2020-07-28 2020-09-26
 United States hCoV-19/USA/CA-CZB-3951/2020
 C241T C379A C1059T C3037T T3499C A10323G G11893T C13673T CC14407TT G16707T C20628T G22225T A23403G C23604A A24922G C25000T G25563T C26801T G27670T T29192A AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_548522
 2020-07-28 2020-09-26
 United States hCoV-19/USA/CA-CZB-3952/2020
 ATT1- T41G C241T C2997T C3037T C4582T C13274Y C14408T T16161C A16500G A18735R A20268G A23403G G23587K G25654T C28854T G28985T C29769T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_548571
 2020-07-28 2020-09-26
 United States hCoV-19/USA/CA-CZB-3954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTC1- A1430G C3037T C12076T C14408T C17862T A20268G C20759T T22618G A23403G T24076C G26660A C28087T C28854T C29642Y TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_552626
 2020-07-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-975BA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C1722T C2252A C3037T T3723C G3955T G6349R C9491T G11243T C14408T T18723C A20268G A23403G G25650K G25720T C25844T C27532T C28854T C29085T G29688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560602
 2020-07-28 2020-09-29
 France hCoV-19/France/BR8934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1267T C1878T A2748T C3037T C4002T C7564T G10097A C13536T C13694T C14408T A23403G C23731T A27660G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562647
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562703
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T TTA516- A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_562848
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC10279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G621A A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562869
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC10321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C25889T GGG28881AAC G29384K TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563559
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC12400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G8858K C14408T G16647T C18555T C18568T G20134K G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_563561
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC12410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563572
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC12555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563586
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC12742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563591
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC12772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G G26660K C27059T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563608
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC12923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T T18509G C18555T C18568T G22992A G23401A A23403G C27610T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563610
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC12949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563614
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC12975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G11083K C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563620
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563622
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C T8431C C14408T G14917R G16647T C18555T G22992A G23401A A23403G C23635T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563623
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G28798A GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563639
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A761G A1163T C3037T T7540C T12883C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563642
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A761G A1163T C3037T T7540C T12883C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_563653
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T A19492G C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563655
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T T18509G C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563666
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C C28657T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563667
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563668
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3564K T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563677
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T637Y A1163T C2227T C3037T C4331Y T7540C C14408T G16647T C18555T C18568T G21850A A22453W G22992A G23401A A23403G C26681T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563678
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563679
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563687
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563693
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563713
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22336T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563717
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T G18782T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563718
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T G3564K G4006T T7540C G9249K G12164K C12295T C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G G24933K GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_563720
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC13406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29640Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564043
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC6768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T T1858C C3037T A6248G T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564109
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC6875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T C19151T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564110
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC6876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564247
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25889Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564248
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T C5100Y T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC G29468S AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564343
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22825C G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564368
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564369
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564398
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564400
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T G1495T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26681Y GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564524
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T C26256Y GGG28881AAC C29837H TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564569
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G19947T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564573
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3860T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G G24992C A26162G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564628
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564686
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C A14084G C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27785C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564687
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T C26684T T27785C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564688
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C27059T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564700
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564705
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564710
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A39R C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564716
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC7866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565000
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565001
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A802G A1163T C3037T T7540C C9198T C14408T G16647T C18555T G20033R G22992A G23401A A23403G G26526T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565009
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C10954Y C14408T G16647T C18555T G22992A G23401A A23403G C25810Y GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565011
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C21660Y C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_565014
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565015
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T GT5743SY T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565016
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565017
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T GT5743SY T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565021
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T GT5743SY T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565022
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565026
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T GT5743SY T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565032
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC C29733T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565033
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565035
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T A21137G G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_565042
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565045
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565046
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565055
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C1800Y C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565056
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565059
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565060
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C1625Y C3037T G3114T T7540C C14408T G16647T C18555T C22480Y G22992A G23401A A23403G C27059T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565061
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T C5140Y T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565062
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C9487Y C14408T G16647T C18555T A19339R C22480T G22992A G23401A A23403G C27059T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565064
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C366Y A1163T C3037T G3114T T7540C A11586R C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565065
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T G18782T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565066
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565067
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565068
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565071
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T C15352Y G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565168
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565172
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_565173
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565174
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4301T T7540C C9438T C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565175
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T T1858C C3037T A6248G T7540C C14408T G16647T C18555T C22480T C22987Y G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565176
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8755/2020
 ATTAAAGGTTT1- C241T G596T A1163T C3037T T7540C C14408T G16647T C17649T C18555T G22992A G23401A A23403G G27382C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565177
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2716Y C3037T C6033T T7540C C11902T C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565178
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G596T A1163T C3037T T7540C C14408T G16647T C17649T C18555T G22992A G23401A A23403G G27382C GGG28881AAC T29014Y CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565179
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565218
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T T17571Y C18555T T22825C G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565285
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G12660K T13354Y C14408T G16647T A17337G C18555T C22227T G22992A G23401A A23403G C23655T GGG28881AAC C28991Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565296
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_565297
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565299
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565300
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C8320Y C14408T C15928T G16647T C18555T C20544T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565301
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565304
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565305
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T C3318T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565306
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565309
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565316
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_565317
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C T9292Y T11713Y C14408T G16647T C18555T C18568T G22992A G23401A A23403G T27484Y GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565321
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C17850Y C18555T G22992A G23401A A23403G A26162G GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_565322
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565323
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G T26552C A27353R GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565325
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C4782Y T7540C C8293Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565326
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T G1401R C3037T T7540C C12672Y C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565327
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565328
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G C25624T A26115M GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565329
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C9967Y C14408T G16647T C18555T G22409S C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565330
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T A20207R C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565333
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC C29627T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565335
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC8985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T G1401R C3037T T7540C C12672Y C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565361
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC9025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T T490C A1163T C3037T C7600T G7798T C11931A C14408T A23403G T23548C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565362
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC9026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T CG21304AA G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565712
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC9783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G11453A C14408T G15594T G16647T C18555T G22992A G23401A A23403G C24210T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565713
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC9784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G11453A C14408T G15594T G16647T C18555T G22992A G23401A A23403G C24370T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_565743
 2020-07-28 2020-09-30
 Australia hCoV-19/Australia/VIC9857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC G29703T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_568571
 2020-07-28 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T T2489C C3037T T4346C C8982T C9286T C10376T C14408T C14708T C16887T T22020C A23403G C28725T GGG28881AAC G29692T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_568572
 2020-07-28 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G669A C3037T T4346C C8109Y C9286T C10376T C14408T C14708T T22020C A23403G C28725T GGG28881AAC G29692T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_568618
 2020-07-28 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1520/2020
 ATTA1- C241T C3037T C14408T C21205T A23403G GGG28881AAC GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_568619
 2020-07-28 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1521/2020
 ATTAAAGGTTT1- C241T C1288T G1298A C3037T C3903T C14408T C18877T A23403G G25445T G25563T T27280C G28851T G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568620
 2020-07-28 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1522/2020
 ATTA1- C241T C2416T C3037T G13763T C14408T C16616T A23403G G25563T C26885T C27603T G28027T C28887T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_568621
 2020-07-28 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1523/2020
 ATTAAAGGTTT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T A23403G G25563T C28087T GGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29794-

EPI_ISL_568622
 2020-07-28 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTC1- C241T C337T C823T C3037T C10376T C12412T T14313C C14408T T19266C A23403G C28311T GGG28881AAC C29580T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_568623
 2020-07-28 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1525/2020
 ATTA1- C241T C952T C2416T C3037T G13425A G13836A C14408T C16616T A23403G G25563T C26885T C27603T C28005T C28887T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_568624
 2020-07-28 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C5467T A7981G C9967T C11878T C14408T C20233T A22803G A23403G G25563T TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_568626
 2020-07-28 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C2110T C3037T A5775G C6582T C14408T C14599T C16260T C20429T A23403G G25563T C26028T T28029C A28401G C28821A TGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29793-

EPI_ISL_568627
 2020-07-28 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1529/2020
 ATTAAAGGTTTA1- C241T C1059T C1441T C3037T C9298T C10702T C14408T T16891C C18657T A23403G C23635T G25127A C25207T G25563T C28892T TGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29809-

EPI_ISL_569029
 2020-07-28 2020-10-02
 France hCoV-19/France/IHU-0982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT947576
 2020-07-28 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T G2001A C3037T C14178T C14408T A18774G T19839C C20148T A23403G GGG28881AAC C29784T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT947578
 2020-07-28 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2756/2020
 ATTAAAGGTTTATA1- C241T C3037T A5101G A12358T C14408T G18803T A22606G A23403G G25922T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT947579
 2020-07-28 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T G2001A C3037T C14408T A18774G T19839C C20148T A23403G G24872T GGG28881AAC C29784T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

MT947586
 2020-07-28 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2757/2020
 ATTAAAGGTTTATACC1- C241T G2001A C3037T C14408T A18774G T19839C C20148T A23403G GGG28881AAC C29784T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_508607
 2020-07-29 2020-08-04
 Australia hCoV-19/Australia/SAP474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_512014 LR882249
 2020-07-29 2020-08-10
 Switzerland 220032
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C683T C1938T C3037T T6934Y C7303T C8964Y G11083T C14408T G17122T G17572T A23403G G25314T G28576T GGG28881AAC C29296Y G29744A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512017 LR882265
 2020-07-29 2020-08-10
 Switzerland 220036
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A605M C635M G2659T C3037T T5386K G5397K C5512Y A5563R G9130T C14408T C16163T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512018 LR882259
 2020-07-29 2020-08-10
 Switzerland 220037
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G515R C583M G625K G1590R C2065Y C3037T T3144K C6472Y T6909Y T6928W C6983Y G9314T C9866T C11471T C12789Y C14183Y C14408T A16210W C19524T G22205C A23403G A23770R C25731T GGG28881AAC G29701T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512478
 2020-07-29 2020-08-11
 United Kingdom hCoV-19/Scotland/CVR3959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C5100T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512479
 2020-07-29 2020-08-11
 United Kingdom hCoV-19/Scotland/CVR3960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C5100T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512480
 2020-07-29 2020-08-11
 United Kingdom hCoV-19/Scotland/CVR3961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C5100T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_512841
 2020-07-29 2020-08-12
 Singapore hCoV-19/Singapore/805/2020
 ATTAAAGGTTTATACCT1- A1423R C2245T C6310A C6312A T8731C C8874Y G11083T C13730T T17016C C19524T C20468T C23929T C27982T C28311T AAAAAAAAAAAA29892-

EPI_ISL_514563
 2020-07-29 2020-08-17
 United Kingdom hCoV-19/Wales/PHWC-1699EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T C21575T G21624T A23403G C26013G G27877T A28523G GGG28881AAC AAA29901-

EPI_ISL_514564
 2020-07-29 2020-08-17
 United Kingdom hCoV-19/Wales/PHWC-1699FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C3037T T3049C C14408T T15555C G21624T A23403G G27877T A28523G GGG28881AAC C28892Y TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_514565
 2020-07-29 2020-08-17
 United Kingdom hCoV-19/Wales/PHWC-169A06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1547W C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514568
 2020-07-29 2020-08-17
 United Kingdom hCoV-19/Wales/PHWC-169A33/2020
 ATTA1- C241T C3037T T3049C G14140K C14408T C21575T G21624T A23403G C26013G G27877T A28523G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_514569
 2020-07-29 2020-08-17
 United Kingdom hCoV-19/Wales/PHWC-169A42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_514572
 2020-07-29 2020-08-17
 United Kingdom hCoV-19/Wales/PHWC-169A7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C9532Y C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_514576
 2020-07-29 2020-08-17
 United Kingdom hCoV-19/Wales/PHWC-169ABB/2020
 ATTAAAGGTTTATACCT1- C241T C3037T T3049C C14408T G21624T C22987T A23403G C26013G G27877T A28523G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515185
 2020-07-29 2020-08-18
 Latvia hCoV-19/Latvia/098/2020
 C241T A1202G C3037T C8318T C12513T C13730T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_515773
 2020-07-29 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1288T C3037T C4002T C9096T G10097A T11362C C13536T C14408T G17592T C19983T A23403G C23731T T27291C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515777
 2020-07-29 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C6762T T12503C C14408T A23403G G25409A G25455T G25770T GGG28881AAC CC29721TT ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_516471
 2020-07-29 2020-08-21
 United States hCoV-19/USA/WI-UW-1045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C25350T G27396T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516472 MT928999
 2020-07-29 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2549A C3037T C9448T C10815T A13712G C14408T C14599T G15732T T19143C C19806T A20268G A23403G C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516476 MT929003
 2020-07-29 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C1302T C2110T C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G G28857T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516484 MT929010
 2020-07-29 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C5020T C6285T C12855T C14408T C19524T C20429T A23403G G27788C C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516486 MT929012
 2020-07-29 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G1957T C2623T C3037T C11916T C13115T C14408T A23403G A23586G G25563T GTT26155- ACGATCG29749- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516487 MT929013
 2020-07-29 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4795T C14408T C18486T A20268G T20501C T22162C A23403G C26776T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516489 MT929015
 2020-07-29 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A23403G G25563T C25603T C27964T C28833T C29535T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516497 MT929023
 2020-07-29 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G1957T C2623T C3037T C11916T C13115T C14408T G22026T A23403G A23586G G25563T GTT26155- ACGATCG29749- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516518 MT929043
 2020-07-29 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G G25947T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516522 MT929047
 2020-07-29 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G G25963A G26199T G26550A C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516538 MT929062
 2020-07-29 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516652
 2020-07-29 2020-08-21
 Ecuador hCoV-19/Ecuador/USFQ-171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2987C C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_517595
 2020-07-29 2020-08-24
 United Kingdom hCoV-19/Wales/PHWC-169B5E/2020
 ATTAAAGGT1- C241T C3037T T3049C C14408T C15963T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_517598
 2020-07-29 2020-08-24
 United Kingdom hCoV-19/Wales/PHWC-169B8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T A18277R G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_517599
 2020-07-29 2020-08-24
 United Kingdom hCoV-19/Wales/PHWC-169BA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_517862 MT966099
 2020-07-29 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1385T G1738T C3037T G3242A C7318T C11916T C14408T A23403G G25563T C28087T

EPI_ISL_517864 MT966101
 2020-07-29 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0974/2020
 ATTAAAGGTT1- C241T C1059T C1385T G1738T C3037T G3242A C7318T C11916T C14408T A23403G G25563T C28087T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_517865 MT966102
 2020-07-29 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0975/2020
 ATTAAA1- C241T C1059T C1385T G1738T C3037T G3242A C7318T C11916T C14408T A23403G G25563T C28087T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_517867 MT966104
 2020-07-29 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C1385T G1738T C3037T G3242A G5558A C7318T A9685G C11916T C14408T A23403G G25563T C28087T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_517868 MT966105
 2020-07-29 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0978/2020
 ATTAAAGGTT1- C241T C1059T C1385T G1738T C3037T G3242A C7318T C11916T C14408T A23403G G23761A G25563T C28087T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_517869 MT966106
 2020-07-29 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-0979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1059T C1385T G1738T C3037T G3242A C7318T C11916T C14408T A23403G G25563T C28087T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_518001
 2020-07-29 2020-08-25
 Singapore hCoV-19/Singapore/837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C6310G C6312A A6397C A10982G G11083T C12400T C13730T C19524T T21775C C23929T G25907A C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518241 MT972095
 2020-07-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C G11083T C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_521291 MT972092
 2020-07-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521292 MT972093
 2020-07-29 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T

EPI_ISL_522938 MT929159
 2020-07-29 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4886T C10369T C10376T C14408T A23403G G27260A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523086
 2020-07-29 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-26-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C11109T G12794A C13671T C14408T C22916A T23018C A23403G G25563T T26047G T26076C G27261T AA27269GT C28535A C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523087
 2020-07-29 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-26-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C13671T C14408T A16569C C22916A T23018C A23403G C24642T G25563T T26047G G27261T AA27269GT C28535A C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523088
 2020-07-29 2020-08-26
 Netherlands hCoV-19/mink/Netherlands/NB-EMC-26-5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C13671T C14408T C22916A T23018C A23403G G25563T T26047G T26076C G27261T AA27269GT C28535A C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523146
 2020-07-29 2020-08-26
 Netherlands hCoV-19/Netherlands/FR-EMC-54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6151A C6701T C14408T C17172T C19170T G19509A A23403G G28041A G28077T CA28253TC GGG28881AAC G29195T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525356
 2020-07-29 2020-08-29
 Ireland hCoV-19/Ireland/71IRL94136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525357
 2020-07-29 2020-08-29
 Ireland hCoV-19/Ireland/71IRL94145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A9828G A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G C25708T G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525358
 2020-07-29 2020-08-29
 Ireland hCoV-19/Ireland/71IRL94252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T C6286T G11132T T11773A C14408T A14578G G21255C C22227T A23403G G23522C G25049T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525756
 2020-07-29 2020-09-01
 United States hCoV-19/USA/WA-S2766/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T A2722G C3037T G9536A C9679T G10565A C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_526071
 2020-07-29 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G293A C3037T C3487T C11308T G14350T C14408T T15264C C16332T C19170T A23403G C25791T C28854T C29614T

EPI_ISL_526072
 2020-07-29 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A20268G A23403G C28854T C29274A

EPI_ISL_526073
 2020-07-29 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T G1264T C3037T C14408T A23403G G25563T C27964T

EPI_ISL_526074
 2020-07-29 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1085T C3037T C4158T C14408T A20268G A23403G C28854T C29274A AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_526075
 2020-07-29 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T1927C C3037T C4900T C10319T C14408T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T

EPI_ISL_526076
 2020-07-29 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19542T A20268G A23403G G24328T C28854T C29274A

EPI_ISL_526111
 2020-07-29 2020-09-01
 United States hCoV-19/USA/WA-OHSU-1933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A808T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_526404
 2020-07-29 2020-09-01
 United Kingdom hCoV-19/England/MILK-9781E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C875T C1150T C2416T C3037T C6525T A10904G C13274T C14408T C18555T G19962C A23403G C24378T G25249T G25563T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526414
 2020-07-29 2020-09-01
 United Kingdom hCoV-19/England/MILK-978486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526735
 2020-07-29 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2801/2020
 ATTAAAGGTT1- C241T C1059T C3037T A3057G C11916T C14408T C15352T C16650T A20675T A23403G G25563T G29179T G29779T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_526736
 2020-07-29 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T A3057G C11916T C14408T C15352T C16650T A20675T A23403G G25563T G29179T G29779T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_527660 MT967960
 2020-07-29 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6420/2020
 C241T C1059T C1734T C3037T C8175T C9541T C14408T G14580T C15857T G19800A A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527660 MT967960
 2020-07-29 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6420/2020
 C241T C1059T C1734T C3037T C8175T C9541T C14408T G14580T C15857T G19800A A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527661 MT967961
 2020-07-29 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6424/2020
 C241T C1059T C1734T C3037T C8175T C14408T G14580T C15857T G19800A A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527661 MT967961
 2020-07-29 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6424/2020
 C241T C1059T C1734T C3037T C8175T C14408T G14580T C15857T G19800A A23403G G25563T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527662 MT967962
 2020-07-29 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6427/2020
 C241T C3037T T4051C G10981T G11083T C14408T C18486T A20268G T22162C A23403G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527662 MT967962
 2020-07-29 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6427/2020
 C241T C3037T T4051C G10981T G11083T C14408T C18486T A20268G T22162C A23403G C28854T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527663 MT967963
 2020-07-29 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6431/2020
 C241T C1059T C1385T G1738T C3037T G3242A T9322Y C11916T C13536T C14408T G20068A A23403G G25563T C28087T G29332T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527663 MT967963
 2020-07-29 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6431/2020
 C241T C1059T C1385T G1738T C3037T G3242A T9322Y C11916T C13536T C14408T G20068A A23403G G25563T C28087T G29332T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527664 MT967964
 2020-07-29 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6435/2020
 C241T C1347T C3037T C4113T C6190T C11758T C12741T C14408T G21974C C23191T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527664 MT967964
 2020-07-29 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6435/2020
 C241T C1347T C3037T C4113T C6190T C11758T C12741T C14408T G21974C C23191T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527665 MT967965
 2020-07-29 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6438/2020
 C241T C1059T C3037T G6052A C6843T C10319T C14408T A17148G G19872T A22095G C22792T A23403G G25563T G25855T C27964T G29254T G29474T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_527665 MT967965
 2020-07-29 2020-09-04
 United States SARS-CoV-2/human/USA/GA-CDC-6438/2020
 C241T C1059T C3037T G6052A C6843T C10319T C14408T A17148G G19872T A22095G C22792T A23403G G25563T G25855T C27964T G29254T G29474T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_528639
 2020-07-29 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C10702T C13740A C14408T A23403G G25563T C25658T G29179T C29870A

EPI_ISL_528640
 2020-07-29 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1181/2020
 AT1- C241T C1059T C3037T G6337A C8109T C10702T C13740A C14408T A23403G A25271G G25563T C25658T G29179T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_528641
 2020-07-29 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1182/2020
 AT1- C241T C1059T C3037T C10702T C13740A C14408T A23403G G25563T C25658T G29179T C29870A

EPI_ISL_528642
 2020-07-29 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1183/2020
 ATTA1- T10W C241T C1059T C3037T C10702T C13740A C14408T C21660T A23403G G25563T C25658T G29179T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528643
 2020-07-29 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1184/2020
 ATTA1- C241T C1059T C3037T C10702T C13740A C14408T A23403G G25563T C25658T G29179T C29870A

EPI_ISL_528644
 2020-07-29 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1185/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C10702T C13740A C14408T A23403G G25563T C25658T G29179T G29260T C29870A

EPI_ISL_528645
 2020-07-29 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1186/2020
 AT1- C241T C1059T C3037T C10702T C13740A C14408T A23403G G25563T C25658T G29179T

EPI_ISL_528650
 2020-07-29 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1228/2020
 A1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530256
 2020-07-29 2020-09-11
 Australia hCoV-19/Australia/QLD998/2020/P1
 ATTAAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_532544
 2020-07-29 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9435BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532550
 2020-07-29 2020-09-11
 United Kingdom hCoV-19/England/QEUH-94367F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4822R C14408T C21575T A23403G C24023T GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532571
 2020-07-29 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13113G C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532574
 2020-07-29 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G569A C853T C3037T C5482T C14408T G17944T G18186T C18747T A22182G A23403G G28209T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532584
 2020-07-29 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C10851T C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532585
 2020-07-29 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943AEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T G2531T C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532604
 2020-07-29 2020-09-11
 United Kingdom hCoV-19/England/QEUH-94342A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C3365T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532630
 2020-07-29 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532634
 2020-07-29 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9410BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532635
 2020-07-29 2020-09-11
 United Kingdom hCoV-19/England/QEUH-94127D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T G8179T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532637
 2020-07-29 2020-09-11
 United Kingdom hCoV-19/England/QEUH-941170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T586W C1968T C3037T G3483T C7113Y T8524C G10097A T10992C C11001T G12191T C14408T C14688T G17562K A23403G C23731T A25201C C25714T C26801Y G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532685
 2020-07-29 2020-09-11
 United Kingdom hCoV-19/England/QEUH-88A80E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534207
 2020-07-29 2020-09-11
 Latvia hCoV-19/Latvia/118/2020/P1
 C241T A1202G C3037T C12513T C13730T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_534208
 2020-07-29 2020-09-11
 Latvia hCoV-19/Latvia/119/2020/P1
 C241T A1202G C3037T C12513T C13730T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_534251
 2020-07-29 2020-09-11
 Sweden hCoV-19/Sweden/20-52538/2020/P1
 C241T C3037T C7267T C9120T C14408T C18032T C20233T A23403G G24926T A27674T GGG28881AAC A29350G

EPI_ISL_535420
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002550/2020
 C241T C3037T C6762T C10755T T12503C C14408T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535422
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C4002T G10097A C13536T C14408T G16117T C18747T A23403G C23625T C23731T GGG28881AAC G29425T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535425
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002556/2020
 ATTA1- C241T C3037T C14408T C22675T A23403G GGG28881AAC G29449T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535427
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6762T T11080C T12503C C14408T A23403G G25409A G25455T GGG28881AAC C29721T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_535433
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002567/2020
 ATTA1- C241T C3037T C14408T C22675T A23403G C24130T GGG28881AAC G29778T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535434
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1190T C3037T A6217G C14408T A23403G T28743C GGG28881AAC T29758G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535435
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002569/2020
 C241T C1190T C3037T A6217G C14408T A23403G T28743C GGG28881AAC T29758G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_535436
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C355T C1218T C3037T C4058T C4093T G14316T C14408T T17859C A20268G CC21811TT A23403G C27481A GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_535439
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1190T C3037T A6217G C14408T A23403G T28743C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_535444
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002579/2020
 ATTA1- C241T C3037T C14408T A23403G C23625T C28849G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_535452
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002587/2020
 A1- C241T C3037T G11447A C14408T C22432T C22675T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535460
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002595/2020
 ATTA1- C241T G709A C3037T T7012A C8090T C8092T C14408T C19402T A23403G G28326T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535461
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C19763T A23403G C23625T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_535475
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G520A C1471T C1601T C3037T A4564G C5806T C6701T C9857T C14408T A23403G A26530G G27561T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_535481
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002617/2020
 AT1- C241T C3037T C4002T A6507G C9532T C9866T G10097A C13536T C14198T C14408T C18747T A23403G C23731T GGG28881AAC G29425T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535488
 2020-07-29 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C14408T C20806T A23403G G25217T C25613T C26013T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536972
 2020-07-29 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9613CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8139Y G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540488
 2020-07-29 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10029T C10449T C11511T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC C29545A G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540489
 2020-07-29 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G23311C A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540490
 2020-07-29 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540491
 2020-07-29 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9130T C14408T A23403G G25563T T27319C G28487A C28868T GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540492
 2020-07-29 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G23311C A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540493
 2020-07-29 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G23311C A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547649
 2020-07-29 2020-09-24
 United States hCoV-19/USA/WI-GMF-13006/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T2845Y C3037T A3057G C14408T A20268G G22014T A23403G A23586R C26873T C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547650
 2020-07-29 2020-09-24
 United States hCoV-19/USA/WI-GMF-13029/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C2667T C3037T C14408T C15324T C16260T C21575T C21622T C22329Y A23403G G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547651
 2020-07-29 2020-09-24
 United States hCoV-19/USA/WI-GMF-13030/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C2667T C3037T C14408T C15324T C16260T C21575T C21622T C22329Y A23403G G25563T C26873T A27379R GAT27382SWY C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547652
 2020-07-29 2020-09-24
 United States hCoV-19/USA/WI-GMF-13033/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C14408T C15324T C16260T C21575T C21622T A23403G G25563T C28821A ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_547653
 2020-07-29 2020-09-24
 United States hCoV-19/USA/WI-GMF-13036/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C2667T C3037T C14408T C15324T C16260T C21575T C21622T C22329Y A23403G G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548484
 2020-07-29 2020-09-26
 United States hCoV-19/USA/CA-CZB-3759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T177Y C241T T1582W G2098R G2407T C3037T C3743T C6781T C8090T C11916T C14408T C19185T C21622T A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548508
 2020-07-29 2020-09-26
 United States hCoV-19/USA/CA-CZB-3931/2020
 ATT1- C241T C1191Y C3037T A6985T C9319T C12412T C13994T T14313C C14408T C15240Y G15406T C18166Y A23403G C25613Y GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_548510
 2020-07-29 2020-09-26
 United States hCoV-19/USA/CA-CZB-3933/2020
 C147T C241T C934T C3037T G3496T C4331T C6548Y T9708C C14408T C18486T A20268G G22021T T22162C A23403G C28054Y C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_548516
 2020-07-29 2020-09-26
 United States hCoV-19/USA/CA-CZB-3929/2020
 AT1- C241T C1059T C3037T C3042T G4285T T7302C C9967T G11083T C12473Y C14408T G19947A A23403G A23416T G25563T C27643T C27964T G28899T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_548534
 2020-07-29 2020-09-26
 United States hCoV-19/USA/CA-CZB-3930/2020
 AT1-H C241T C3037T A6985T C9319T C12412T C13994T T14313C C14408T C15240T G15406T A23403G C25613T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548598
 2020-07-29 2020-09-26
 United States hCoV-19/USA/CA-CZB-3995/2020
 AT1- C241T C3037T G10265A G12798T C14408T G14430T C22523M A23403G C25708T G26113C C28677T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548604
 2020-07-29 2020-09-26
 United States hCoV-19/USA/CA-CZB-3998/2020
 ATT1- T10K C241T A257C C1594T C3037T T3493C T8383C C14408T A20268G G21718K G22051A A23403G C26111T C28647T C28854T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_548632
 2020-07-29 2020-09-26
 United States hCoV-19/USA/CA-CZB-3996/2020
 ATTAAAGGTTTA1- C241T G376T A2015G C3037T C4901T A6360G C9541T C14408T G21372T A23403G C24502A G25273T C25904T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_548642
 2020-07-29 2020-09-26
 United States hCoV-19/USA/CA-CZB-4001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATC1- C241T C346T C3037T C14408T A20268G G21423T A23403G G26196C C28854T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548652
 2020-07-29 2020-09-26
 United States hCoV-19/USA/CA-CZB-4002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C203M C241T C3037T C4551T C6633T C14408T G19999T A20268G A23403G G23628T T24076C C26464T C28854T C29541T C29555T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_549038
 2020-07-29 2020-09-28
 Norway hCoV-19/Norway/2955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6968T C14408T C15720T C17985T T19839C A20395G A23403G C24099T G25595A A28366G GGG28881AAC C28905T C29296T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549070
 2020-07-29 2020-09-28
 Norway hCoV-19/Norway/2958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T G4006T C14408T A23403G GGG28881AAC C29754T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549081
 2020-07-29 2020-09-28
 Norway hCoV-19/Norway/2959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549115
 2020-07-29 2020-09-28
 Norway hCoV-19/Norway/2990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9130T C13458T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550451
 2020-07-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-977F59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C5621T G9479T C14408T T17751C A20288C A23403G G28476T GGG28881AAC G29449T G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550481
 2020-07-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-978046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T G9463A C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC A29407G T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560604
 2020-07-29 2020-09-29
 France hCoV-19/France/BR8936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T A20268G A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560605
 2020-07-29 2020-09-29
 France hCoV-19/France/BR8937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560606
 2020-07-29 2020-09-29
 France hCoV-19/France/BR8938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G22992A A23403G C25710T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562707
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC8928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T TTA516- A1163T C3037T C5005T T7540C C14408T G15594T G16647T C18555T G22410R G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_562755
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC13402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G61T C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCC28879- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562868
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC10319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5907M T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562954
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC10548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C9120T C14408T G16647T C18555T C19366T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563163
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC10948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6020T T7540C C14408T A15498R G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563170
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC10961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C16887T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563209
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC11028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A5790G T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G C27998Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563226
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC11056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563229
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC11067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C13424Y C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_563241
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC11085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T T7540C T12530C C14408T C16323Y G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563255
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC11115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6033T T7540C C9344T C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A C27494T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563287
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC11183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C T8431C C14408T G16647T C18555T C20823T G22992A G23401A A23403G C23635T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563575
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC12597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563580
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC12710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C832Y A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563613
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC12966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C10332T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C24852T T27957C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563617
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC13082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563621
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC13112/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C T8431Y C14408T G16647T C18555T G22992A G23401A A23403G C23635Y C28706Y GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563651
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC13283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563654
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC13293/2020
 ATTA1- C241T A1163T C3037T T7540C T9976C C11003Y C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC C29200T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563657
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC13297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C A14355G C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563669
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC13318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A4269G T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563672
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC13321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4999T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563680
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC13334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T394Y A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563684
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC13341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26895T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_563689
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC13353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563702
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC13377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C12672Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563710
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC13388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25509Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563716
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC13400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G11083T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564044
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC6770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C11902T C14408T G16647T C18555T C18568T C22498M G22992A G23401A A23403G C23457A C27538Y GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564221
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564370
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21588T G22992A G23401A A23403G C23673Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564371
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C635Y A1163T C3037T A6029M T7540C C8673Y G8678R C10519Y A12130G C14408T G16647T C18555T C21302T CG21304AA G22992A G23401A A23403G G25726T C28253Y GGG28881AAC C29274Y CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564372
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564373
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15613T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564374
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564375
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7389/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T C6033T T7540C A8667W G8881K C11902T C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_564376
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T10717Y C14408T C15342Y G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564377
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22858Y G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564379
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564380
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T A2015R C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564401
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5365T T7540C C14408T C16394T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564402
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5806Y T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564403
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7427/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26464A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564574
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564580
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564690
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564691
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C C14408T C15371T G16647T A17337G G17418R C18555T G22992A G23401A A23403G C23707T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564692
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- T42W C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T C22458Y G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564693
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C23707T C23929T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564694
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C9985T A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C C28868T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564695
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C T14171C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564696
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T C26684T T27785C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564699
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564703
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564704
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564707
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C1594Y C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564715
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC7865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T G3259T T7540C C14408T G16647T C18555T C18568T C20629Y G21850A G22992A C23277T G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565003
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC8425/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565069
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC8519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565070
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC8520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C20077Y C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565111
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC8619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC G29134K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565112
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC8621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T T28861Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565181
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC8761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565182
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC8767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22591Y G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565183
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC8768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26447Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565184
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC8769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22858Y G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565185
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC8773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T C15720Y G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565187
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC8776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3096Y C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565189
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC8779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26227A GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565219
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC8826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565286
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC8930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T C22227T G22992A G23401A A23403G C23655T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565363
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC9028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A10021G C14408T C15324T G16647T C18555T G22992A G23282R G23401A A23403G C25831T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565696
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC9760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_565707
 2020-07-29 2020-09-30
 Australia hCoV-19/Australia/VIC9775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29347T G29692T G29777T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_566064
 2020-07-29 2020-10-01
 United Kingdom hCoV-19/England/203180881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C20703T C21575T A23403G G26918T GGG28881AAC T29464C TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_568628
 2020-07-29 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1327T G2258A C2306T C3037T A6441G C8140T T9875C C11941T G14122T C14408T C19763T A20268G T20799C A23403G G24620T C28854T G29513A CCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29802-

EPI_ISL_569034
 2020-07-29 2020-10-02
 France hCoV-19/France/IHU-1012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G C22088T G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569620
 2020-07-29 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0012/2020
 ATTA1- C241T C1059T C3037T C3773T T14191C C14408T C16260T A23403G A24253T G25563T C28821A C29541T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MT947584
 2020-07-29 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2766/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T A2722G C3037T G9536A C9679T G10565A C14408T A23403G G25563T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_512020 LR882270
 2020-07-30 2020-08-10
 Switzerland 220040
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C274T C313T C466M C512Y T576Y C3037T G3567K CA3683YR T3756Y A5421M T5449Y T6886W G7071S T8082C C9286T A9859W C14267T C14408T A16210W C18395T C19763T A23403G C28732T GGG28881AAC G29260T C29627Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512021 LR882266
 2020-07-30 2020-08-10
 Switzerland 220041
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C5170T C6026Y C6286T T6996W G7756T C7772T G10300T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512023 LR882269
 2020-07-30 2020-08-10
 Switzerland 220043
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T6913Y G6960R G9130T G11083T C14408T C16111T C21478G A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512024 LR882267
 2020-07-30 2020-08-10
 Switzerland 220046
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A439M G526K T576Y C635Y G2659T C2983M C3037T T5550K G5555R A5563D C6285Y G6977K G7037R G9130T T10076W C14408T C16163T A23403G C25703Y T27319C C28253Y G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512025 LR882285
 2020-07-30 2020-08-10
 Switzerland 220047
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C274T C313T C3037T T7035W T8082C G8258K C9286T C14408T C16580Y G18972K C19763T A23403G C28732T GGG28881AAC G29260T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_512381
 2020-07-30 2020-08-11
 United Kingdom hCoV-19/England/NOTT-112E5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3102G C14408T C15180T T16251C T19839C A22893G A23403G G28509A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514567
 2020-07-30 2020-08-17
 United Kingdom hCoV-19/Wales/PHWC-169A24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T T3049C C14267T C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC C29870M

EPI_ISL_515610
 2020-07-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002213/2020
 AT1- C241T A1809C C3037T C4002T G10097A C13536T C14408T C18747T A23403G C23731T GGG28881AAC G29425T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_515612
 2020-07-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002215/2020
 ATTAAAGG1- C241T C3037T C6762T G11083T T12503C C14408T A23403G G25455T G25770T GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515763
 2020-07-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T G709A C3037T T7012A C12100T C12534T C14408T C19402T A23403G C25721T G28326T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515764
 2020-07-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T234C C241T C2706T C3037T C6317T T12503C C14408T C20178T A23403G GGG28881AAC C29721T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515771
 2020-07-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002407/2020
 A1- C241T C3037T A7064G G11083T C13059T C14408T C22675T A23403G T27384C G27967T GGG28881AAC G29477T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515778
 2020-07-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1859T C3037T C4276T C6762T T12503C C14408T G18739T A23403G G25770T A26594C G28350A GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515780
 2020-07-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10039T T12503C C14408T A23403G G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515781
 2020-07-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T T12503C C14408T A23403G G25770T C28674T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_515782
 2020-07-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002420/2020
 ATTA1- C241T C3037T C6762T T12503C C14408T A23403G G25455T G25770T GGG28881AAC C29721T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_515789
 2020-07-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002428/2020
 ATTAA1- C241T C3037T A7064G C14408T C22675T A23403G A23938G C23997T C25521T G25767T C26586T T27384C GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_515790
 2020-07-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002429/2020
 G101A C241T C3037T C6762T A11260G T12503C C14119T C14408T A23403G G25770T GGG28881AAC C29721T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515791
 2020-07-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1113T C3037T C6762T T12503C C14408T A23098G A23403G G25455T G25770T G27463A GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_515794
 2020-07-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T G709A C3037T T7012A C14408T C19402T A23403G G28326T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_515797
 2020-07-30 2020-08-19
 South Africa hCoV-19/South Africa/KRISP-K002441/2020
 ATTA1- C241T C3037T C4002T G10097A G11083T C13536T C14408T C18747T A23403G C23731T G24038T GGG28881AAC G29425T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_516457 MT928985
 2020-07-30 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18877T C19324A A20374G A23403G T25468C G25563T C26464T C27450T T29194C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516459 MT928987
 2020-07-30 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A2207G C3037T C3828T G11083T G14277T C14408T G16301A T18513C T22054C A23403G T24499C G25563T C27297T C27752T C27964T A29368G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516466 MT928994
 2020-07-30 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516479 MT929006
 2020-07-30 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G1957T C2623T C3037T G7898T C11916T C14408T A23403G A23586G G25563T ACGATCG29749- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516480
 2020-07-30 2020-08-21
 United States hCoV-19/USA/WI-UW-1054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C534T C3037T C7681T C12025T G12753A C14408T C18029T C18377T T19839C T22469C A23403G T23458A C23707T G28027A GGG28881AAC GTACGATCGAGT29747- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516482 MT929008
 2020-07-30 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C12357T G14316T C14408T T19839C C21928T A23403G C23707T T24631C C26110T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516485 MT929011
 2020-07-30 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516492 MT929018
 2020-07-30 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1407G C3037T C5183T A10323G C13255T C14408T T15276A C16293T C17939T A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516493 MT929019
 2020-07-30 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516494 MT929020
 2020-07-30 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516515 MT929040
 2020-07-30 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C12357T G14316T C14408T T19839C C21928T A23403G C23707T T24631C C26110T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516519 MT929044
 2020-07-30 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2549A C3037T G4288A C8090T C10815T C14408T C14599T G15732T T19143C G19657A A20268G A23403G C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516536 MT929060
 2020-07-30 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T C1059T C3037T G5037A G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516539
 2020-07-30 2020-08-21
 United States hCoV-19/USA/WI-UW-1114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T G29825T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516547 MT929071
 2020-07-30 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4795T C6594T C14408T C18486T A20268G T20501C T22162C A23403G C26776T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517544
 2020-07-30 2020-08-24
 United Kingdom hCoV-19/England/SHEF-C0D41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517548
 2020-07-30 2020-08-24
 United Kingdom hCoV-19/England/SHEF-C3AED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C401T G625T T1438C C3037T C13665T C14408T C15960T G16741T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517556
 2020-07-30 2020-08-24
 United Kingdom hCoV-19/England/SHEF-C71F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C14408T C21637T TTA21991- A23403G G24368T T25496C A28169G T28251G C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524489
 2020-07-30 2020-08-28
 United Kingdom hCoV-19/England/BRIS-13380B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A4420R C6543T A11228G T12730W C14408T C14877T G15822T A19403W C20759Y T21995C A23403G G25563T A26489M G27121R G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525362
 2020-07-30 2020-08-29
 Ireland hCoV-19/Ireland/71IRL94844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C T21765C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525753
 2020-07-30 2020-09-01
 United States hCoV-19/USA/WA-S2763/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T T1927C C3037T C5239T T7747G A10171G C10319T C14408T A18424G G18756T C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_525754
 2020-07-30 2020-09-01
 United States hCoV-19/USA/WA-S2764/2020
 ATTAAAGGTTTATA1- C241T A1807C G2235T C3037T G11540T C14408T C18877T T20717C A23403G G25483A G25563T C27732T C29738T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_525806
 2020-07-30 2020-09-01
 United States hCoV-19/USA/ID-OHSU-1977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2668T C3037T C6070T C11704T C14408T A23403G G25563T G26909C G28655T C28887T C29733T

EPI_ISL_526078
 2020-07-30 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6441G C8140T A9204G C14408T A20268G A23403G C28854T C29445T

EPI_ISL_526079
 2020-07-30 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11620T C14408T C18877T C21302T CG21304AA A23403G G25563T A25964C C27942T G28027T C28706T T28889C

EPI_ISL_526080
 2020-07-30 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1973/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C4021T C4655A C14408T C15933T G16968T A17760T T19839C C21855T A23403G C26885T G27788T GGG28881AAC

EPI_ISL_526082
 2020-07-30 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A187G C241T C1616T C2037T C3037T C9967T C10714T C14408T G15543T C19763T T22242C A23403G T25729C

EPI_ISL_526083
 2020-07-30 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12374T C14408T T19839C C20806T G21641T A23403G A23756G G25249T C25515T A26612T GGG28881AAC C29085T G29692C

EPI_ISL_526112
 2020-07-30 2020-09-01
 United States hCoV-19/USA/WA-OHSU-1953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4551T C6633T C14408T T15207C A20268G A23403G C23635T T24076C C26464T C26527T C28854T C29541T

EPI_ISL_526113
 2020-07-30 2020-09-01
 United States hCoV-19/USA/WA-OHSU-1965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A808T C3037T C8818T C14408T C15952T G20980A A23403G

EPI_ISL_526114
 2020-07-30 2020-09-01
 United States hCoV-19/USA/WA-OHSU-1967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A808T C3037T C8818T G11083T C14408T C15952T G20980A A23403G

EPI_ISL_526405
 2020-07-30 2020-09-01
 United Kingdom hCoV-19/England/MILK-97828C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T T16401C G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526406
 2020-07-30 2020-09-01
 United Kingdom hCoV-19/England/MILK-9782D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526407
 2020-07-30 2020-09-01
 United Kingdom hCoV-19/England/MILK-9782E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C2706T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526408
 2020-07-30 2020-09-01
 United Kingdom hCoV-19/England/MILK-9782F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526410
 2020-07-30 2020-09-01
 United Kingdom hCoV-19/England/MILK-97832F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C2706T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526411
 2020-07-30 2020-09-01
 United Kingdom hCoV-19/England/MILK-97833E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526412
 2020-07-30 2020-09-01
 United Kingdom hCoV-19/England/MILK-978389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T T16401C G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526413
 2020-07-30 2020-09-01
 United Kingdom hCoV-19/England/MILK-978477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C2706T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526415
 2020-07-30 2020-09-01
 United Kingdom hCoV-19/England/MILK-978495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526418
 2020-07-30 2020-09-01
 United Kingdom hCoV-19/England/MILK-978583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T G13043T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526739
 2020-07-30 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T A3057G C11916T C14408T C15352T C16650T A20675T A23403G G25563T G29179T G29779T C29854- G29868A CA29870TC

EPI_ISL_526740
 2020-07-30 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2806/2020
 A1- C241T C1059T C3037T A3057G C11916T C14408T C15352T C16650T A20675T A23403G G25563T G29179T G29779T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_526741
 2020-07-30 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- A35G C241T C1059T C3037T A3057G C11916T C14408T C15352T C16650T A20675T A23403G G25563T G29179T G29779T

EPI_ISL_526742
 2020-07-30 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C3037T A3057G C11916T C14408T C15352T C16650T A20675T A23403G G25563T G29179T G29779T A29896G

EPI_ISL_526743
 2020-07-30 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2809/2020
 C241T C1059T C3037T A3057G C11916T C14408T C15352T C16650T A20675T A23403G G25563T G29179T G29779T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527064
 2020-07-30 2020-09-03
 Australia hCoV-19/Australia/NSW2647/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528655
 2020-07-30 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14408T C20703T A23403G G25563T C28006T C28087T G28371T G29332T C29870A

EPI_ISL_528656
 2020-07-30 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1385T G1738T C3037T G3242A C4993T C6706T C11916T C14408T C20703T A23403G G25563T C28087T G28371T G29332T

EPI_ISL_528657
 2020-07-30 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1238/2020
 ATTAAAGGTTTATACC1- C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14225T C14408T C20703T A23403G G25563T C28087T G28371T G29332T

EPI_ISL_528658
 2020-07-30 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1239/2020
 ATT1- C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14225T C14408T C20703T A23403G G25563T C28087T G28371T G29332T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_528659
 2020-07-30 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1240/2020
 A1- C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14225T C14408T C20703T A23403G G25563T C28087T G28371T G29332T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_528660
 2020-07-30 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14408T C20703T A23403G G25563T C28087T G28371T G29332T C29870A

EPI_ISL_528661
 2020-07-30 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14408T C16949T C20703T A23403G G25563T C28087T G28371T A29320G G29332T

EPI_ISL_528662
 2020-07-30 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14408T C20703T A23403G G25563T C28087T G28371T G29332T C29870A

EPI_ISL_529530
 2020-07-30 2020-09-10
 United Kingdom hCoV-19/England/ALDP-97F1C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529531
 2020-07-30 2020-09-10
 United Kingdom hCoV-19/England/ALDP-97F20D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529532
 2020-07-30 2020-09-10
 United Kingdom hCoV-19/England/ALDP-97F2B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7945T C9430T C14408T A23403G T25518C G26918T C28093T GGG28881AAC C29364A T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529620
 2020-07-30 2020-09-10
 United Kingdom hCoV-19/England/BIRM-626CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3227A T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529939 MT993866
 2020-07-30 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14408T C20703T A23403G G25563T C28087T G28371T G29332T C29733T C29870A

EPI_ISL_529941 MT993868
 2020-07-30 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1249/2020
 C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14408T C20703T A23403G G25563T C28087T G28371T G29332T

EPI_ISL_530257
 2020-07-30 2020-09-11
 Australia hCoV-19/Australia/QLD999/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_532124
 2020-07-30 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G9479T G10097A C13887T C14408T T15665C C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532541
 2020-07-30 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9436BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3426T A9339G C14408T C14688T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532576
 2020-07-30 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9433E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T T7633C G10097A C10369T C13536T C14408T C15763T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532599
 2020-07-30 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532603
 2020-07-30 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T G11083T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532605
 2020-07-30 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T C11020T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532608
 2020-07-30 2020-09-11
 United Kingdom hCoV-19/England/QEUH-94335A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T C6681T G10097A T10992C C11001T C14408T G19666T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532609
 2020-07-30 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532616
 2020-07-30 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9436D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532618
 2020-07-30 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532619
 2020-07-30 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9435EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G G23868S G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532629
 2020-07-30 2020-09-11
 United Kingdom hCoV-19/England/QEUH-94368E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C2652Y A2895G C3037T C6395T C11020T A12410G C13423T C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535359 MT997770
 2020-07-30 2020-09-14
 United States SARS-CoV-2/human/USA/RI-CDC-6616/2020
 C241T C815T C3037T C3411T T10795C C14408T C18452T A21137G A23403G G25437T GGG28881AAC G29706T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535360 MT997771
 2020-07-30 2020-09-14
 United States SARS-CoV-2/human/USA/RI-CDC-6619/2020
 C241T C335T C1059T G2448A C3037T C14408T C15579T T16425G C17639T C22388T A23403G G25563T A26120G C26455T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_535405
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C3037T G11083T C12439T T12503C C14408T A23403G G28851T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535406
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C3593T T12503C C14408T A23403G G25218T GGG28881AAC G28975T C29721T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_535408
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A2421G C3037T C7604T C10202T T12503C C14408T C22480T A23403G GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535410
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002537/2020
 A1- C241T A1566G G2447T C3037T T12503C C14408T C18647T A23403G A25259G G25660T G25770T GGG28881AAC C29721T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535412
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002542/2020
 ATTA1- C241T C3037T C6762T C9223T T12503C C14184T C14408T C17676T A23403G G25770T A28390G GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_535413
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14408T C18747T A23403G C23731T G26918A GGG28881AAC G29425T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535414
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002544/2020
 ATT1- C241T A1989G C3037T C6762T T12503C C14408T G22801T A23403G G25770T GGG28881AAC G29399T C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535415
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1427T G2801A C3037T C8092T C8407T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535416
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C10802T C14408T C16293T A23403G G26690T C28253T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_535417
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T C4002T G10097A C13536T C14408T C18747T A23403G C23731T GGG28881AAC G29425T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535421
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002552/2020
 A1- C241T C3037T C6762T T12503C C14184T C14408T C17676T A23403G G25770T GGG28881AAC C29721T AAAAAAAAAAAAAAA29889-

EPI_ISL_535426
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T A7064G A13768G C14408T G14547T C22675T A23403G T27384C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_535430
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002562/2020
 ATTAAAGGTTTA1- C241T C3037T G11447A G14035A C14408T G17944T C22675T A23403G G28077T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_535431
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002563/2020
 C241T C815T C3037T G11447A C13432T C14408T C22675T A23403G G28077T GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_535438
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002572/2020
 ATTA1- C241T C2488T C3037T C3505T C6525T T12503C C14408T A23403G GGG28881AAC C29721T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_535445
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1288T C3037T C4002T C4810T G10097A A11088G C13536T G13812T C14408T G17592T C19983T G20057A A23403G C23731T G28300T G28727T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535457
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002592/2020
 AT1- C241T C3037T T12503C C14408T C16490T C18401T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535463
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002598/2020
 C241T C3037T G11447A C14408T C22675T C22987T A23403G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535465
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1170T C3037T C14408T A23403G G25598T T26531C GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_535469
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002605/2020
 ATT1- C186T C241T C3037T T12503C C14408T G18960A C22687T A23403G G24057A G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535471
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G11447A C14408T C21306T C22675T A23403G G28077T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535473
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2164C C3037T A5366C C6027T C7083T T9498C C14097T C14408T A20268G C22987T A23403G C24023T C26305T A28294C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_535478
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002614/2020
 ATTAAAGGT1- C241T A939G C3037T C14408T A23403G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_535484
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002621/2020
 C241T C3037T A4764G T6148C G11083T T12503C C14408T A23403G GGG28881AAC A29221G C29721T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535559
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002698/2020
 ATT1- C241T C3037T T12503C G13159A C14408T C15212T C16936T C17336T G19518T A23403G T24691C C26873T GGG28881AAC C29721T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535562
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002702/2020
 AT1- G61T C241T C3037T A7064G C13059T C14408T C22675T A23403G T27384C GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535563
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002703/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T G2720A C3037T A7064G A9972G C14408T G19525T C22675T A23403G C25521T C26586T T27384C GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535564
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002704/2020
 A1- C241T C3037T G11447A C14408T C22675T A23403G G28077T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_535565
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002706/2020
 AT1- C241T C3037T T4183C C6840T C14408T A23403G C25797T C28005T T28240C GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535566
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T12503C C14408T C18647T A23403G G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535567
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002708/2020
 C241T C3037T C4002T C9073T G10097A G11083T C13536T C14408T C14931A G15906T C18747T A23403G C23731T C23896T C24023T GGG28881AAC G29425T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535568
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002709/2020
 ATTAAAGGT1- C241T T2378A C3037T G11447A C14408T C22675T A23403G G28077T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535569
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1150T C3037T C14408T A23403G G25563A A27747T C28005T GGG28881AAC C29730T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535570
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002711/2020
 A1- C241T C3037T A7064G C14408T C16626T G17019T C19017T C22675T A23167G A23403G C25521T C26586T T27384C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535571
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C5974T C9979T C14408T A23403G C23520T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535572
 2020-07-30 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002715/2020
 AT1- C241T C2048T C3037T G4706A C14408T C15952T C16111T C16308T C21757T A23403G C23625T G28690T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_536578 MW035376
 2020-07-30 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536989
 2020-07-30 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961BA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T T7633C G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537002
 2020-07-30 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961B9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537007
 2020-07-30 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961DD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T A18522R G19254T T19893C A23403G C25889T C26058Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537070
 2020-07-30 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961D1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T C4633T G10097A C13536T C14408T T14652C C18885T A23403G C23683T C23731T G28179T GGG28881AAC C29296T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537081
 2020-07-30 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961E73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537104
 2020-07-30 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961D85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2962T C3037T T5507A C10202T T13634C C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537107
 2020-07-30 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961C79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A G6041C C8293T A10323G C14408T C15848T C16084T C19862T T19893C C21381T A23403G C26625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537115
 2020-07-30 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2501G C3037T C6395T G10565C G11804A A12410G C14408T A18366G C18788T T19839C T21093C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538512
 2020-07-30 2020-09-17
 Indonesia hCoV-19/Indonesia/PA-NIHRD-PME4306/2020
 T205C A4860G C5622A C13207T C17104T C22450T A23305G A24118G G26211T G29254A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_540494
 2020-07-30 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540495
 2020-07-30 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540496
 2020-07-30 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820T C3037T C10029T C10449T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540497
 2020-07-30 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A17287G C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540498
 2020-07-30 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A17287G C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540499
 2020-07-30 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9130T G11083T C14408T A23403G G25563T T27319C G28487A C28868T GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540500
 2020-07-30 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C10029T C10449T T12066C C14408T C18647T T19839C C21595T C21646T A23403G T25711C C26846T T28009C G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540501
 2020-07-30 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540502
 2020-07-30 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C100T C241T C745T C3037T C10029T C10449T T11458G C11511T T12066C C14408T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC C29545A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540503
 2020-07-30 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G G25455T A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540504
 2020-07-30 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9130T C14408T A23403G G25563T T27319C G28487A C28868T GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540508
 2020-07-30 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1590A C3037T T5389C A6426G G14400T C14408T C18877T G21123T A23403G G25563T C26735T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548366
 2020-07-30 2020-09-26
 United States hCoV-19/USA/CA-CZB-3624/2020
 ATTA1- C241T G1843A C3037T T3598W C3743Y C3828T C12880T C14408T C19386T A20268G A23403G G25252T C28854T C28887T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548515
 2020-07-30 2020-09-26
 United States hCoV-19/USA/CA-CZB-3935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- G198R C241T C3037T G5437T A6716G G11596T C14408T A16607T G20569T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548605
 2020-07-30 2020-09-26
 United States hCoV-19/USA/CA-CZB-3997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCGGGTGTGAC1- C855A A1989G C3037T C6543T G13576T C14408T G16236A G19657A G20002T A20268G A23403G C28854T G28985T C29769T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549048
 2020-07-30 2020-09-28
 Norway hCoV-19/Norway/2956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2143T C3037T C6726T G9130T C14408T C16163T G20060T A23403G T27319C G28487A C28868T GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549089
 2020-07-30 2020-09-28
 Norway hCoV-19/Norway/2960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6402T A9185G C14408T A16734G A20268G C21638A A23403G G24794T C25810T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549091
 2020-07-30 2020-09-28
 Norway hCoV-19/Norway/2963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT C10519T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549113
 2020-07-30 2020-09-28
 Norway hCoV-19/Norway/2987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T A20255C A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549118
 2020-07-30 2020-09-28
 Norway hCoV-19/Norway/2993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9130T C13458T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549184 MW040606
 2020-07-30 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1402/2020
 AT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T T17700C A20559G T21765C A23403G G25563T G28001T C28087T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_550432
 2020-07-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9780CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T G9463A C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC A29407G T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550445
 2020-07-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9781AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550450
 2020-07-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9780DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T G9463A C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC A29407G T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550456
 2020-07-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-978152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G T25139C T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550461
 2020-07-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-978107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T T16401C G16741T C17410T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550465
 2020-07-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9780FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T G9463A C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC A29407G T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560997
 2020-07-30 2020-09-30
 Gambia hCoV-19/Gambia/3678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9891T C14408T C21736T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561000
 2020-07-30 2020-09-30
 Gambia hCoV-19/Gambia/3683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C9891T C14408T C21736T A23403G G25563T C29537T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561001
 2020-07-30 2020-09-30
 Gambia hCoV-19/Gambia/3703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C601T C1625T C3037T G3250T C6026T C14408T A20268G A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561003
 2020-07-30 2020-09-30
 Gambia hCoV-19/Gambia/3724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C5575T C14408T C17676T A20268G A23403G G25563T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561004
 2020-07-30 2020-09-30
 Gambia hCoV-19/Gambia/3725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1065G C1347T C3037T C3373A C9561T C14408T C16575T A23403G G24586T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561006
 2020-07-30 2020-09-30
 Gambia hCoV-19/Gambia/3729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C14408T G17014T A20268G A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561009
 2020-07-30 2020-09-30
 Gambia hCoV-19/Gambia/3737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1065G C3037T C3373A C9561T C14408T C16575T A23403G G24586T C27923T CCACGCGGAGT29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561011
 2020-07-30 2020-09-30
 Gambia hCoV-19/Gambia/3743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T A2745G C3037T C14408T A20268G G22706T A23403G A25974G C26499T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561012
 2020-07-30 2020-09-30
 Gambia hCoV-19/Gambia/3749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C3653T C8772T C14408T A20268G A23403G C28833T G29553T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561013
 2020-07-30 2020-09-30
 Gambia hCoV-19/Gambia/3761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C10377T C14408T C17676T A20268G A23403G G25563T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562606
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC11001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C16222T G16647T A17337G C18555T C22858T G22992A G23401A A23403G C24034T -25700CCC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562607
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC11027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T C16222T G16647T A17337G C18555T A19950R T21570K C22858T G22992A G23401A A23403G C24034T -25700CCC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562608
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC11039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C8650T C14408T G16647T A17337G C18555T C22858T G22992A G23401A A23403G -25700CCC GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_562639
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTCATGTTA510- A1163T C3037T T7540C C11460T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562850
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T C4655Y T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562856
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T C21575T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562874
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_562878
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C8626Y C11195T A12790T C14408T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562879
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562881
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G558K G660K G663K A1163T G2036K C3037T C3551Y G3564K G5375K G7038K G7214K T7540C G8790K G9141K G9249K G10986K G12164K G13571K G14277K C14408T G14548R G15594T G16647T G17848K G18318K C18555T C20629T G21123K G22018K G22899K G22992A G23401A A23403G G24557K G24933K G28079K GGG28881AAC G29781K TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_562883
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562885
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29218T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563001
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C27213T GGG28881AAC ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_563005
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6701Y T7540C C14408T G15260K G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563026
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3114T C4296T T7540C C8480T G10753R C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563031
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563036
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C18683T C22323T G22992A G23401A A23403G G24102C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563057
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T G3564K T7540C C8717T C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G G24933K GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563078
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T T1354C C3037T T7540C C14408T C15371T G16647T A17337G G17418R C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563089
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6843Y T7540C C14408T G16647T C18555T T22315C G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563092
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A5790G T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G C25810T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563096
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T A1163T C3037T T7540C C14408T C15371Y G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563104
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T C4296T T7540C C8480T G10753A C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563108
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563121
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T A1163T C3037T T7540C C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G C25350T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563122
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563181
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC10982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563199
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC11014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563619
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC13093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C16767Y C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563665
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC13313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G T27835Y G28851C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563670
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC13319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T T18509G C18555T C18568T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563685
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC13344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29067Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563686
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC13347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G18973T C21005T G22992A G23401A A23403G G25145R GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564045
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC6772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C11747T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_564046
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC6773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G18859T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564048
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC6775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T GT5743SY GG5765RS T7540C C14408T G16647T C18555T G22992A G23401A A23403G A24942W GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564053
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC6784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T GT5743SY T7540C C12473Y C14408T C15324T G16647T C18555T C20555M G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564054
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC6786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_564172
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC6975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G G25362K G26439K GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564378
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC7392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564381
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC7396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C12763Y C14408T G16647T A17337G C18555T G22992A G23401A A23403G C26029M GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564382
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC7398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564383
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC7399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G18859T A22179G G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564384
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC7400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C11747T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_564385
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC7403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A802G A1163T C3037T T7540C C9198T C11750Y C14408T G16647T C18555T G22992A G23401A A23403G A26451R G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564387
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC7405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564602
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC7719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564603
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC7720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564698
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC7847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T G25855T T27785C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564708
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC7857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3860T T7540C C14408T C15352T G16647T C18555T C20480Y G22992A G23401A A23403G C26029M A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565113
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC8622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565114
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC8623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C3487A T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565190
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC8781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T T16491Y G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565191
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC8782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C G10996R C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565192
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC8783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T4341C T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565193
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC8784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G5253A C6033T T7540C C11902T C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565194
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC8785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C18693T C22480T G22992A G23401A A23403G C25075Y C27059T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565197
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC8790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565349
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC8999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C7162T T7540C C13620T C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565350
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC9000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565365
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC9035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C193T C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565366
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC9036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565514
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC9349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565621
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC9603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G4285T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C25777T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565622
 2020-07-30 2020-09-30
 Australia hCoV-19/Australia/VIC9604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C4703Y T7540C C12513T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_566058
 2020-07-30 2020-10-01
 United Kingdom hCoV-19/England/202740182/2020
 ATTAAAGGTTTATA1- C241T C3037T G4285T G4583A T4917C C6070T C8832T C14408T C21575T A23403G G24926T A28792T GGG28881AAC A29669G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_569036
 2020-07-30 2020-10-02
 France hCoV-19/France/IHU-1014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T A11782G C14408T T21570G C21575T A23403G T25473C C28253T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569037
 2020-07-30 2020-10-02
 France hCoV-19/France/IHU-1015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G C22088T G22894A A23403G C25886T G28198T C28833T G28851T TTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29680-

MT929063
 2020-07-30 2020-08-26
 United States SARS-CoV-2/human/USA/IL-UW-1114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G2036T C3037T C11916T C14408T G23311T A23403G A23586G G25563T G29825T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT947547
 2020-07-30 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2763/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T T1927C C3037T C5239T T7747G A10171G C10319T C14408T A18424G G18756T C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

MT947553
 2020-07-30 2020-08-31
 United States SARS-CoV-2/human/USA/WA-S2764/2020
 ATTAAAGGTTTATA1- C241T A1807C G2235T C3037T G11540T C14408T C18877T T20717C A23403G G25483A G25563T C27732T C29738T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

MT997206
 2020-07-30 2020-09-12
 United States SARS-CoV-2/human/USA/NC-SLPH-0007/2020
 C241T G599T C936T C3037T G3259T C14408T C22323T A23403G G24095T C26270T GGG28881AAC

EPI_ISL_510542
 2020-07-31 2020-08-07
 Australia hCoV-19/Australia/SAP476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G18973T C21005T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_512382
 2020-07-31 2020-08-11
 United Kingdom hCoV-19/England/NOTT-112E79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3102G C14408T C15180T T16251C T19839C A22893G A23403G G28509A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514248
 2020-07-31 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_371/2020
 C241T A1163T C3037T C6445T C14408T G22801T A23403G C27769T G28122T GGG28881AAC

EPI_ISL_514249
 2020-07-31 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_372/2020
 C241T C3037T C14408T C15279T A23403G G24193T GGG28881AAC G29737A

EPI_ISL_514250
 2020-07-31 2020-08-15
 Bangladesh hCoV-19/Bangladesh/BCSIR-NILMRC_374/2020
 C241T A1163T C1420T G2086T C3037T C7800T C12439T A12772G C14408T G18951T A23403G T26099G T27580C C28542T GGG28881AAC

EPI_ISL_514344
 2020-07-31 2020-08-17
 United Kingdom hCoV-19/England/203290060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C274T C2062T A2810G C3037T C6258T C6395T A10317G A12410G C14408T C16323T A18366G C18788T T19839C T21093C A23403G C25703T T27029C GGG28881AAC AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_514350
 2020-07-31 2020-08-17
 United Kingdom hCoV-19/England/203290067/2020
 AT1- C36T C241T C274T C2062T A2810G C3037T C6395T A10317G A12410G C14408T C16323T T17319C A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_515186
 2020-07-31 2020-08-18
 Latvia hCoV-19/Latvia/099/2020
 C241T A1202G C3037T C12513T C13730T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_516447 MT928975
 2020-07-31 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2549A C3037T C9448T C10815T C14408T C14599T G15732T T19143C C19806T A20268G A23403G C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516448 MT928976
 2020-07-31 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T T3532C T9022C C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516464 MT928992
 2020-07-31 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G1957T C3037T G6532T C11916T C14408T G15093A A23403G A23586G G25563T G26918T ACGATCG29749- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516474 MT929001
 2020-07-31 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G1957T C3037T G6532T C11916T C14408T G15093A A23403G A23586G G25563T G26918T ACGATCG29749- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516488 MT929014
 2020-07-31 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T A696C C3037T G3871T T3931C C6906T A8390G C14408T C19402T A23403G G24124T G24926T C25153T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516495 MT929021
 2020-07-31 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1498T C3037T C4686T G9805A A10323G C14408T T15276A G20774A A23403G G25563T G28842T A29222G C29632T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516510
 2020-07-31 2020-08-21
 United States hCoV-19/USA/WI-UW-1084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C25350T G27396T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516513 MT929038
 2020-07-31 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T G2035T C3037T G5629T G7743T C11956T C12025T C14408T G17049A T19839C A23403G C23707T G27281T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516552 LR882283
 2020-07-31 2020-08-21
 Switzerland 230000
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T7035W C10156T G10265A C14408T C15720T A15972G C19718T C22987T C23191T A23403G G26700T G28373T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516554 LR882277
 2020-07-31 2020-08-21
 Switzerland 230003
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T T6954K G9130T C14408T C16111T A23403G T27319C T27716Y G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516556 LR882290
 2020-07-31 2020-08-21
 Switzerland 230005
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G411R A439R G458R G463R G521K C593Y A642M A2905W C3037T C3101M G3113R T3532W C3738T T5335Y A6126W A6900W G9130T C9870Y A9900M T10076W C12641Y C14408T C16111T T16378Y C17746Y T21725Y C22995Y C23077Y A23403G T27319C C27864Y G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517933 MT966256
 2020-07-31 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1043/2020
 ATT1- C241T C3037T T11675C C14408T T22843C A23403G C25452T C26010T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_517934 MT966257
 2020-07-31 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1044/2020
 A1- C241T C3037T T11675C C14408T T22843C A23403G C25452T C26010T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_517939 MT966262
 2020-07-31 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1049/2020
 ATT1- C241T C1059T C1441T C3037T C9298T C14120T C14376T C14408T A23403G C23635T G25127A G25563T C28892T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518242 MT972096
 2020-07-31 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_523517
 2020-07-31 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G G25563T C26735T T26876C C28311T C28854T A28900C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523687
 2020-07-31 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C8645T C9246T C11109T C12415T C14408T C17750T G17790T T19159G G22661T A23403G G24821T G25563T G25565A T27342C G28655T G29781T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524486
 2020-07-31 2020-08-28
 United Kingdom hCoV-19/England/BRIS-1337A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C5310T G6337T G11083T C14805T A16142G A22069G G26144T A28272G G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525365
 2020-07-31 2020-08-29
 Ireland hCoV-19/Ireland/71IRL95385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5554T C14408T G19891T C21575T C22938A A23403G C23997T C24034T G25249T G26152T C27532T G28321T GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525366
 2020-07-31 2020-08-29
 Ireland hCoV-19/Ireland/71IRL95471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C344T C683T C3037T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525367
 2020-07-31 2020-08-29
 Ireland hCoV-19/Ireland/71IRL95850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5554T C14408T G19891T C21575T C22938A A23403G C23997T C24034T G25249T G26152T C27532T G28321T GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525368
 2020-07-31 2020-08-29
 Ireland hCoV-19/Ireland/71IRL95870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6566T G10265A C14408T A15972G C17678T A17864G C19718T G20002T G22205T A23403G C23707T T24892C G27541T G27544T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525369
 2020-07-31 2020-08-29
 Ireland hCoV-19/Ireland/71IRL95947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T C9969T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525370
 2020-07-31 2020-08-29
 Ireland hCoV-19/Ireland/71IRL95961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T C9969T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526084
 2020-07-31 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10042G C14318T C14408T C16260T A16534G C16575T G22484T A23403G G24781T G25273T G25563T C28821A

EPI_ISL_526085
 2020-07-31 2020-09-01
 United States hCoV-19/USA/OR-OHSU-1999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2273A C3037T G5037A C14408T C15024T C16260T C20429A A23403G G25563T C28821A

EPI_ISL_526419
 2020-07-31 2020-09-01
 United Kingdom hCoV-19/England/MILK-9785A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526420
 2020-07-31 2020-09-01
 United Kingdom hCoV-19/England/MILK-9785B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T C18246T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526421
 2020-07-31 2020-09-01
 United Kingdom hCoV-19/England/MILK-9785CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2453T C3037T A12180G C14408T G19816T G22918T A23403G G28396A GGG28881AAC G29227A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526422
 2020-07-31 2020-09-01
 United Kingdom hCoV-19/England/MILK-9785DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2453T C3037T A12180G C14408T G19816T G22918T A23403G G28396A GGG28881AAC G29227A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526744
 2020-07-31 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C882T C3037T C4876T C6990T G9526T C10456T C14408T C18877T A23403G G25563T C25710T C26735T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_529569
 2020-07-31 2020-09-10
 United Kingdom hCoV-19/England/ALDP-984FA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532065
 2020-07-31 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9609EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532548
 2020-07-31 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9435CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532554
 2020-07-31 2020-09-11
 United Kingdom hCoV-19/England/QEUH-94393A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C3365T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532559
 2020-07-31 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9434DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C11379T C14408T A23403G C23481Y G25314T GGG28881AAC G29234T C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532573
 2020-07-31 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9439FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T G2035T C3037T G8102T C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532590
 2020-07-31 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9433D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T T7633C G10097A C10369T C13536T C14408T G16943K A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532601
 2020-07-31 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9435FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4832T C11289T C14408T T15051C A20255G A23403G G25690T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532602
 2020-07-31 2020-09-11
 United Kingdom hCoV-19/England/QEUH-94340C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532610
 2020-07-31 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T G9463A C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC A29407G T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532623
 2020-07-31 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9433F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534209
 2020-07-31 2020-09-11
 Latvia hCoV-19/Latvia/120/2020/P1
 C241T A1202G C3037T C12513T C13730T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_534233
 2020-07-31 2020-09-11
 Sweden hCoV-19/Sweden/20-08951/2020/P1
 C241T C3037T C5826T T6334C C6449T A7479G T8063G C10818T C11494T C14408T T18132C G22992A A23403G T26966C

EPI_ISL_534248
 2020-07-31 2020-09-11
 Sweden hCoV-19/Sweden/20-52476/2020/P1
 C241T C2721T C3037T C5826T T6334C C6606T T8063G C10818T C13011T C14408T G22992A A23403G C24378T G26158T T26966C

EPI_ISL_534249
 2020-07-31 2020-09-11
 Sweden hCoV-19/Sweden/20-52533/2020/P1
 C241T C3037T C7267T C9120T C14408T C18032T C20233T A23403G G24926T A27674T GGG28881AAC A29350G

EPI_ISL_535428
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T A11279G T12503C C14408T A23403G G25770T GGG28881AAC C29721T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_535440
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002574/2020
 ATT1- C241T C3037T G11447A C14408T G17302T C22675T A23403G G28077T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_535442
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002577/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T G11447A C14408T C22675T A23403G G26257T G28077T GGG28881AAC G29332T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535443
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11447A C14408T C21306T C22675T A23403G GGG28881AAC C29721T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_535446
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002581/2020
 AT1- C241T C3037T C4189T A7064G C9810T C14408T C22675T A23403G G25641T GGG28881AAC C29137T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_535447
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002582/2020
 ATTAAAGGTTTAT1- C241T C3037T C6026T C8668T C14408T C21057T A23403G C23625T G28690T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_535450
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002585/2020
 ATTAAAGGTTTATACCT1- C241T C3037T T10273C T12503C C12924T C14408T C16490T T16584C C19273T A23403G G25770T GGG28881AAC C29721T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535455
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002590/2020
 ATTA1- C241T C3037T G11447A C14408T C22675T A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_535462
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002597/2020
 ATTA1- C241T C934T C3037T C6762T G11083T T12503C C14408T C16323T A23403G G25770T A27736G GGG28881AAC C29721T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_535466
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002602/2020
 A1- C241T T2378A C3037T T5126A A8285G G11447A C14408T C19011A C22675T A23403G C25553T G28077T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535468
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11447A C14408T C18131T C21575T C22675T A23403G G28077T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535470
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002606/2020
 ATTA1- C241T C3037T G11447A C14408T C16393T C22675T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_535479
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C6762T A9439G C14408T A23403G G25770T GGG28881AAC G28913T C29721T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_535483
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002619/2020
 AT1- C241T C3037T G4255A A7064G C14408T C21108T C22675T A23403G T27384C GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535485
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3165A A5706G G11447A C14408T C22675T A23403G G28077T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535497
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4255A A7064G C14408T C21108T C22675T A23403G T27384C GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_535500
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002630/2020
 ATTAAA1- C241T G2086T C3037T G11447A C14408T G18583T C22675T A23403G G28077T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535502
 2020-07-31 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002632/2020
 AT1- C33T C241T G709A C3037T T7012A C12100T C12534T C14408T C19402T A23403G C25721T G28326T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_536967
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9618B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C C920A A2869G C3037T G6352T C6445T C10868T C14408T C14741T G15652T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536980
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961E64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C A5667T A6597G C9924T C12651T C14408T G14923A G21624T C22006T A23403G G25699A C26270T G28628T GGG28881AAC A29403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536997
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96171E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536998
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536999
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96174B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T G2035T C3037T G8102T C14408T C18744T A18978G A23403G G25563T G26526C A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537027
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G C24023T GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537033
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C24700A G25052A G25660T C26922Y C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537059
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961D2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537089
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96159C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537103
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537108
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961C3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083K C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537109
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96158D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G21624T A21868T A23403G G27967T GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537132
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961DB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C3365T C14408T A23403G G27467T GGG28881AAC A29101G G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537134
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T G2183A T2743G C3037T A9433T T9668C G10265A C14408T C14724T G17370T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537142
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961B4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G T23510C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537146
 2020-07-31 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9618FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G862K C3037T G11447A C14408T C18084Y C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540505
 2020-07-31 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G G25455T A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540506
 2020-07-31 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G G25455T A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540603
 2020-07-31 2020-09-21
 United Kingdom hCoV-19/England/LIVE-AABE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C1190T G2035T C3037T G8102T C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540614
 2020-07-31 2020-09-21
 United Kingdom hCoV-19/England/LIVE-AAD01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C1190T G2035T C3037T G8102T C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547541
 2020-07-31 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547654
 2020-07-31 2020-09-24
 United States hCoV-19/USA/WI-GMF-13139/2020
 ATTAAAGGT1- C241T C1059T C3037T C6627T C8208T C14408T C14805T C15324T C16260T C21575T C21622T C22329Y A23403G G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548507
 2020-07-31 2020-09-26
 United States hCoV-19/USA/CA-CZB-3942/2020
 ATT1- C241T C1059T C3037T C9532T C13730T C14408T C16260T C16733T A23403G C23575T G25563T C28821A A28870G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_548531
 2020-07-31 2020-09-26
 United States hCoV-19/USA/CA-CZB-3939/2020
 T76K C241T C1059T T1936C C3037T C13487T C14408T C16192T C16260T C21575T C21707T A23403G C23557T C25267T G25563T G26690T C28821A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_549027
 2020-07-31 2020-09-28
 Norway hCoV-19/Norway/2952/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT C10519T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549069
 2020-07-31 2020-09-28
 Norway hCoV-19/Norway/3006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT C10519T G11132T C14408T G21255C C22227T A23403G G26104T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549071
 2020-07-31 2020-09-28
 Norway hCoV-19/Norway/3007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14085T C14408T A23403G G24933T C25731T G27583T C28153T C28253T GGG28881AAC G29701T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549099
 2020-07-31 2020-09-28
 Norway hCoV-19/Norway/2973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T A20255C A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549117
 2020-07-31 2020-09-28
 Norway hCoV-19/Norway/2992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9130T C13458T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549124
 2020-07-31 2020-09-28
 Norway hCoV-19/Norway/2953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T C6231T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549143
 2020-07-31 2020-09-28
 Norway hCoV-19/Norway/2949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1738T C2037T C3037T C10138T A10912G G11083T C14408T C17004T A23403G C25276T C27002T T27922C GGG28881AAC C29614T A29735G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549154
 2020-07-31 2020-09-28
 Norway hCoV-19/Norway/2950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6968T C14408T C15720T C17985T T19839C A20395G A23403G C24099T G25595A A28366G GGG28881AAC C28905T C29296T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549165
 2020-07-31 2020-09-28
 Norway hCoV-19/Norway/2951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6968T G11417T C14408T C15720T C17985T T19839C A20395G A23403G C24099T G25595A A28366G GGG28881AAC C28905T C29296T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550419
 2020-07-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9787C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550434
 2020-07-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-978608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1174T C3037T C5055T G11851T C14408T C14786T C15371T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550440
 2020-07-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9785ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550457
 2020-07-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-978741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C2189T C3037T G13520T C13860T C14408T T15978C T16284C G17278T G19109T A22496C A23403G G25699T C27925T GGG28881AAC G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550463
 2020-07-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-97869F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C4002T G10097A C13536T C14408T C15738T A23403G C23731T C24912T G25440T C27970T C28674T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550475
 2020-07-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-978653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550508
 2020-07-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-97877E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C4276T A4490G C7119T T8729C G10642T C11195T C14408T C19152T C20148T A23403G G26109T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550509
 2020-07-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-978644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1630T G2426A C3037T C3373A C4331T G5326T C5986T C9733T C14408T G18859T T20273C G21786T A23403G C26882T GGG28881AAC C29119T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550510
 2020-07-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-978662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C4002T G10097A C13536T C14408T C15738T A23403G C23731T C24912T G25440T C27970T C28674T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562855
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T A2410G C3037T G3564K T7540C G9249K C14408T G16647T C18555T C18683T C22323T A22457R G22899K G22992A G23401A A23403G G24102C G24933K GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_562862
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T T22501W C22526V G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562863
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C18683T C22323T G22992A G23401A A23403G G24102C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562873
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T A22339M G22992A G23401A A23403G C25665T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_562884
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22825C G22992A G23401A A23403G G26526T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_562886
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C G11083K C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562888
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563009
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C T14394Y C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563016
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3040Y T7540C C14408T G16647T C18555T C22664Y G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563056
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563067
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G A27770G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563094
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G G25690T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563105
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5512Y T7540C C9808Y C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC C29200T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563120
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563123
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563164
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14241K C14408T G16647T C18555T A20437R C22689Y G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563165
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22006Y C22480T G22992A G23401A A23403G C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563167
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3860T T7540C C14408T C15352T G16647T C18555T C21812T G22992A G23401A A23403G G24992C A26162G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563172
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C5144T T7540C C14408T A16166C G16647T C18555T G22992A G23401A A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563184
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC10986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563202
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC11019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C13501T C14408T G16647T C17850T C18555T G22992A G23401A A23403G T25789W GGG28881AAC C29518T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563216
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC11042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563218
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC11044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563222
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC11050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C T8002Y C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563232
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC11073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A10276G C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563234
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC11075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T8431C C14408T G16647T C18555T G22992A G23401A A23403G C23635T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563236
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC11077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T C19102T C21575T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563239
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC11083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563743
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC13542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563752
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC13556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5310T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563768
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC13586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C26060Y GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563770
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC13591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563789
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC13624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563791
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC13635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3096Y G3114T C6968T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_564049
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC6776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564222
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564255
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G C24745T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564351
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C12459Y C14408T G16647T C18555T G22992A G23401A A23403G G23856A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564388
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564389
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19983Y G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564390
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T T2824Y C3037T C6347Y T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564391
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3737T T7540C G11083T C14408T G16647T C18555T C19217T A19426G G21255C G22992A G23401A A23403G C28725T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564392
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6312T T7540C C14408T G15594T C16289T G16647T C18555T G22992A G23401A A23403G C26907T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564393
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A23418G GGG28881AAC C28961T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564397
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564406
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564575
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5192Y T7540C C14408T G16647T C18555T A20121G G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564577
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114K T7540C A14084R C14408T G16647T C18555T A20288M G22992A G23401A A23403G C23707Y C27059Y T27785Y GGG28881AAC C29585Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564578
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T G3860T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G G24992C A26162G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_564581
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C C28868T GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_564582
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564583
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564593
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564594
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G11708A C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564629
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A761G A1163T C3037T T7540C T12883C C14408T G16647T C18555T G22992A G23401A A23403G C27196Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564632
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC7756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19560Y G22992A G23401A A23403G T28061Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565115
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC8624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565116
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC8625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565199
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC8793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565200
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC8794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29750M ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_565201
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC8795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C7834T T9860Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565202
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC8798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C17649T C18555T G22992A G23401A A23403G C26085Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565203
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC8800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC A29016R ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565204
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC8801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7051Y T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565205
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC8802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_565207
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC8805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G11083T C14408T G16647T C18555T G22992A G23401A A23403G G28851K GGG28881AAC T29821A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565208
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC8806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T T22391Y G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565212
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC8814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C2106T G2945K C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25521T C28253T GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_565354
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC9011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C G11708R C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565367
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC9037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29218T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565370
 2020-07-31 2020-09-30
 Australia hCoV-19/Australia/VIC9041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_566035
 2020-07-31 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C4234T G6320T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907K G26620T C27964T C28472T C28869T C29364Y AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT997208
 2020-07-31 2020-09-12
 United States SARS-CoV-2/human/USA/NC-SLPH-0009/2020
 ATTAAAGGTT1- C241T G599T C936T C3037T G3259T C14408T C22323T A23403G G24095T C26270T GGG28881AAC

MT997212
 2020-07-31 2020-09-12
 United States SARS-CoV-2/human/USA/NC-SLPH-0010/2020
 ATTA1- C241T G1524A C3037T C3817T C10138T C10376T T13339C C14408T G22104C A23403G T26486C GGG28881AAC

EPI_ISL_498544
 2020-07-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8841T C14408T C16111T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498545
 2020-07-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498546
 2020-07-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498547
 2020-07-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498548
 2020-07-xx 2020-07-27
 Australia hCoV-19/Australia/ACT0090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_498558
 2020-07-xx 2020-07-27
 Italy hCoV-19/Italy/FVG-ICGEB_S208/2020
 C16T C241T C1762T C3037T C4321T G14055C C14408T G20398A A23403G G23793A A25965G A26530G G28079T

EPI_ISL_514266
 2020-07-xx 2020-08-16
 Israel hCoV-19/Israel/CVL-n25334/2020
 AT1- C241T C313T C3037T G4510A C14408T G15438T A23403G G25785T GGG28881AAC G29260T

MT925980
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C815T C3037T C3411T T10795C C14408T C17339T C18452T A23403G G25437T GGG28881AAC C29870A

MT925981
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0796/2020
 ATTAAAGGTT1- C241T C815T C3037T C3411T T10795C C14408T C17339T C18452T A23403G G25437T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAA29879-

MT925982
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0797/2020
 ATTAAAGGTT1- C241T C815T C3037T C3411T C6573T T10795C C14408T CT16163TC C18452T A23403G G25437T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MT925983
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0798/2020
 ATTA1- C241T C815T C3037T C3411T C6573T T10795C C14408T C18452T A23403G G25437T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MT925984
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T1918C C3037T C6402T C8320T G9190T A11782G C12171T C14408T C18877T C19102T G19872T G21893A A23403G C23664T G25563T C29530T A29865R C29870A

MT925985
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0801/2020
 ATTAAAGGTTTA1- C241T T1918C C3037T C6402T C8320T G9190T A11782G C12171T C14408T C18877T C19102T G19872T G21893A A23403G C23664T G25563T C29530T C29870A

MT925986
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0803/2020
 AT1- C241T T1918C C3037T C6402T C8320T G9190T A11782G C12171T C14408T C18877T C19102T G19872T G21893A A23403G C23664T G25563T C29530T C29870M

MT925987
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- A38R C241T T1918C C3037T C6402T C8320T C12171T C14408T C18877T A23403G G25563T G28079T G29540A

MT925988
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T1918C C3037T C3743T C6402T C8320T G9190T A11782G C12171T C14408T C17441T C18877T C19102T G19872T G21893A A23403G C23664T G25563T C29530T C29870A

MT925989
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0807/2020
 ATTAAAGGTTT1- C241T T1918C C3037T C6402T C8320T G9190T A11782G C12171T C14408T C18877T C19102T G19872T G21893A A23403G C23664T G25563T T26502C C29530T C29870A

MT925991
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0810/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C25658T G28457A G29179T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT925992
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0811/2020
 ATTA1- C241T C1059T C3037T C14408T A23403G G25563T C25658T G28457A G29179T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT925993
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-0812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G G25563T C25658T G28457A G29179T C29870A

MT925995
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-1154/2020
 AT1- C241T T511C C1059T C2143T C3037T A5560T C5892T C8092T C10319T A10724G C13225T C14408T C19170T C22120T A23403G A23474G C24378T G25563T C27964T A29677C G29862S AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT925996
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-1155/2020
 ATTAAAGGTTTA1- C241T T511C C1059T C2143T C3037T A5560T C5892T C8092T C10319T A10724G C13225T C14408T C19170T C22120T A23403G A23474G C24378T G25563T C27964T A29677C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MT925997
 2020-07-xx 2020-08-26
 United States SARS-CoV-2/human/USA/VA-DCLS-1156/2020
 ATTA1- C241T T511C C1059T C2143T C3037T A5560T C8092T C10319T A10724G G12070T C13225T C14408T C19170T C22120T A23403G A23474G C24378T G25563T C27964T A29677C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT952613
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0722/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T G4201T G5539A C8664A G8851A C14408T T22573C A23403G A25505C C26895T G28747T GGG28881AAC G29474T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MT952614
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0723/2020
 ATTAAAGGTTTA1- C241T C3037T G4201T G5539A C8664A G8851A C14408T T22573C A23403G A25505C C26895T G28747T GGG28881AAC G29474T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT952615
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T G5539A C8664A G8851A C14408T T22573C A23403G A25505C G28747T GGG28881AAC C29738T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

MT952617
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T G4201T G5539A C8664A G8851A C14408T T22573C A23403G A25505C C26895T G28747T GGG28881AAC G29474T

MT952620
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0729/2020
 C241T C2773T C3037T G5539A C6286T C8664A G8851A C14408T T22573C A23403G A25505C G28747T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MT952621
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4201T G5539A C8664A G8851A C14408T T22573C A23403G A25505C G28747T GGG28881AAC G29474T C29870A

MT952623
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0733/2020
 ATTAAAGGTT1- C241T C3037T G4201T G5539A C8664A G8851A C14408T T22573C A23403G A25505C G28747T GGG28881AAC G29474T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT952624
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5539A C8664A G8851A C14408T T22573C A23403G A25505C G28747T GGG28881AAC C29738T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MT952626
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A894G C1059T G2035T C3037T C11916T C14408T C16111T C18998T T21940C TTA22159- A23403G G25563T G25947C C28854T G29540A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT952627
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0738/2020
 ATTAAAGGT1- C241T C1059T G2035T C3037T C11916T C14408T C16111T C18998T T21940C A23403G C25207T G25563T G25947C C28854T G29540A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT952628
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A894G C1059T G2035T C3037T C11916T C14408T C16111T C18998T T21940C A23403G G25563T G25947C C28854T G29540A

MT952629
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T G2035T C3037T C11916T C14408T C16111T C18998T A19505W T21940C A23403G G25563T G25947C C28854T G29540A C29870A

MT952630
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0741/2020
 ATTAAAGGTTTATACC1- C241T C1059T G2035T C3037T C11916T C14408T C16111T C18998T T21940C A23403G G25563T G25947C C28854T G29540A

MT952639
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C9561T C14408T T22213C A23403G G25563T C25658T

MT952640
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0756/2020
 ATTAAA1- C241T C1059T C3037T C14408T T22213C A23403G G25563T C25658T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT952642
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T T22213C A23403G G25563T C25658T

MT952663
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0775/2020
 ATTA1- C241T C934T G1042A C1059T C3037T C3768T C14408T C14925T A23403G G25563T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

MT952664
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C934T G1042A C1059T C3037T C3768T C14408T C14925T A23403G G25563T C29870A

MT952669
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C815T C3037T C3411T T10795C C14408T C17339T C18452T A23403G G25437T GGG28881AAC G29449T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT952670
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0791/2020
 ATT1- C241T C815T C3037T C3411T C6573T T10795C C14408T C18452T A23403G G25437T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MT952671
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0793/2020
 ATTAAAGGTTTATACC1- C241T C815T C3037T C3411T C6573T T10795C C14408T CT16163TC C18452T A23403G G25437T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MT952672
 2020-07-xx 2020-09-02
 United States SARS-CoV-2/human/USA/VA-DCLS-0794/2020
 ATTA1- C241T C815T C3037T C3411T C6573T T10795C C14408T C18452T A23403G G25437T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

MT981086
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C10702T C13740A C14408T A23403G G25563T C25658T G29179T C29870A

MT981087
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1181/2020
 AT1- C241T C1059T C3037T G6337A C8109T C10702T C13740A C14408T A23403G A25271G G25563T C25658T G29179T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT981088
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1182/2020
 AT1- C241T C1059T C3037T C10702T C13740A C14408T A23403G G25563T C25658T G29179T C29870A

MT981089
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1183/2020
 ATTA1- T10W C241T C1059T C3037T C10702T C13740A C14408T C21660T A23403G G25563T C25658T G29179T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

MT981090
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1184/2020
 ATTA1- C241T C1059T C3037T C10702T C13740A C14408T A23403G G25563T C25658T G29179T C29870A

MT981091
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1185/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C10702T C13740A C14408T A23403G G25563T C25658T G29179T G29260T C29870A

MT981092
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1186/2020
 AT1- C241T C1059T C3037T C10702T C13740A C14408T A23403G G25563T C25658T G29179T

MT981093
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1221/2020
 ATTAAAGGTTTATACCT1- C241T C1441T C3037T C14408T C18486T A20268G T22162C A23403G C24358A C28854T C29870A

MT981094
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C24358A C28854T

MT981095
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1224/2020
 ATTA1- C241T C1059T C3037T C4423T C14408T A23403G G25563T C25658T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT981096
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1385T G1738T C3037T A3051G G3242A C5806T C11916T C12559T C14408T C20703T A23403G G25563T C28087T G29332T

MT981097
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1228/2020
 A1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MT981101
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14408T C20703T A23403G G25563T C28006T C28087T G28371T G29332T C29870A

MT981102
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C1385T G1738T C3037T G3242A C4993T C6706T C11916T C14408T C20703T A23403G G25563T C28087T G28371T G29332T

MT981103
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1238/2020
 ATTAAAGGTTTATACC1- C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14225T C14408T C20703T A23403G G25563T C28087T G28371T G29332T

MT981104
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1239/2020
 ATT1- C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14225T C14408T C20703T A23403G G25563T C28087T G28371T G29332T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

MT981105
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1240/2020
 A1- C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14225T C14408T C20703T A23403G G25563T C28087T G28371T G29332T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

MT981106
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14408T C20703T A23403G G25563T C28087T G28371T G29332T C29870A

MT981107
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14408T C16949T C20703T A23403G G25563T C28087T G28371T A29320G G29332T

MT981108
 2020-07-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C1385T G1738T C3037T G3242A C6706T C11916T C14408T C20703T A23403G G25563T C28087T G28371T G29332T C29870A

EPI_ISL_514352
 2020-08-01 2020-08-17
 United Kingdom hCoV-19/England/203290069/2020
 AT1- C36T C241T C274T C2062T A2810G C3037T C6395T A10317G A12410G C14408T C16323T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514537
 2020-08-01 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514577
 2020-08-01 2020-08-17
 United Kingdom hCoV-19/Wales/PHWC-169ACA/2020
 ATTAAAGGT1- C241T C3037T T3049C G11083K C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_516456 MT928984
 2020-08-01 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G1957T C3037T C4668T G6532T C11916T C14408T G15093A A23403G A23586G G25563T G26918T ACGATCG29749- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516470 MT928998
 2020-08-01 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2533A C3037T C3717T C5654T G5992A C14408T C18647T G22484T A23403G C25916T T27299C GGG28881AAC T29148C C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516473 MT929000
 2020-08-01 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516475 MT929002
 2020-08-01 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T A1407G C3037T C5183T A10323G C13255T C14408T T15276A C16293T C17939T A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517601
 2020-08-01 2020-08-24
 United Kingdom hCoV-19/Wales/PHWC-169BD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A435G C1437T C3037T C14408T A23403G G25775T C27807T GGG28881AAC G29745T

EPI_ISL_517928 MT966251
 2020-08-01 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1038/2020
 ATT1- C241T C3037T T11675C C14408T T22843C A23403G C25452T C26010T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517929 MT966252
 2020-08-01 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1039/2020
 ATT1- C241T C3037T T11675C C14408T T22843C A23403G C25452T C26010T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_517931 MT966254
 2020-08-01 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1041/2020
 ATT1- C241T C3037T T11675C C14408T T22843C A23403G C25452T C26010T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_517932 MT966255
 2020-08-01 2020-08-24
 United States SARS-CoV-2/human/USA/FL-BPHL-1042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T11675C C13011T C14408T T22843C A23403G C25275T C25452T C26010T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_523695
 2020-08-01 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174T C241T C3037T C4052A C4345T C10029T C10449T G11335T C14408T T19839C C21646T A23403G C25708T C26846T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523696
 2020-08-01 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T T1918C C3037T T4640C C5512T C6195T C7119T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523697
 2020-08-01 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523698
 2020-08-01 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C13297T C14408T C17750T G17790T T19159G C21156T A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523699
 2020-08-01 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1060T C1594T T1918C C3037T T4640C C5512T C6195T C7119T C9246T C11109T C12415T C14408T C14913T C17750T G17790T T19159G A23403G G25563T G25565A G26211C T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523703
 2020-08-01 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T G8414A C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523708
 2020-08-01 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523712
 2020-08-01 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2747T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523721
 2020-08-01 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G C21622T A23403G G25563T G25565A C25624T T27342C G28655T T29317C G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523727
 2020-08-01 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_525371
 2020-08-01 2020-08-29
 Ireland hCoV-19/Ireland/71IRL96106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T T21570G C21575T A23403G T25473C C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525373
 2020-08-01 2020-08-29
 Ireland hCoV-19/Ireland/71IRL96183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T C6286T G11132T T11773A C14408T A14578G G21255C C22227T A23403G G23522C G25049T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525376
 2020-08-01 2020-08-29
 Ireland hCoV-19/Ireland/71IRL96316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525383
 2020-08-01 2020-08-29
 Ireland hCoV-19/Ireland/71IRL96356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525384
 2020-08-01 2020-08-29
 Ireland hCoV-19/Ireland/71IRL96368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A9828G A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525386
 2020-08-01 2020-08-29
 Ireland hCoV-19/Ireland/71IRL96375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525387
 2020-08-01 2020-08-29
 Ireland hCoV-19/Ireland/71IRL96376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C A22029T C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525388
 2020-08-01 2020-08-29
 Ireland hCoV-19/Ireland/71IRL96380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C5301T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526423
 2020-08-01 2020-09-01
 United Kingdom hCoV-19/England/MILK-978AB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526424
 2020-08-01 2020-09-01
 United Kingdom hCoV-19/England/MILK-978AC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526745
 2020-08-01 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T A3057G A11895T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_529567
 2020-08-01 2020-09-10
 United Kingdom hCoV-19/England/ALDP-984C43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11923G C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529568
 2020-08-01 2020-09-10
 United Kingdom hCoV-19/England/ALDP-984D04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C10188T A12061C C14408T C21575T C21637T A23403G C23525T A28169G GGG28881AAC G29781T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530127 MT997219
 2020-08-01 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2770/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T T1927C C3037T C10319T C14408T A18424G C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_530128
 2020-08-01 2020-09-10
 United States hCoV-19/USA/WA-S2771/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T T19839C C20148T A23403G C27925A G27948T GGG28881AAC C29784T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_530280
 2020-08-01 2020-09-11
 Australia hCoV-19/Australia/QLD1027/2020/P1
 ATTAAAGG1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC

EPI_ISL_532539
 2020-08-01 2020-09-11
 United Kingdom hCoV-19/England/QEUH-943A73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T G5515T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532540
 2020-08-01 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9439B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532561
 2020-08-01 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-943493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A A4244R G8120C T9640C C14408T C15738T T19839C C21646T A23403G A24205T A25817G G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532563
 2020-08-01 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9439A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532569
 2020-08-01 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9434C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T A25817G G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532587
 2020-08-01 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9435AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532588
 2020-08-01 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9434FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532600
 2020-08-01 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9434A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532615
 2020-08-01 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9434EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC G28954R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532621
 2020-08-01 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-943439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535448
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A7064G C14408T C22675T A23403G C25521T C26586T C26873T T27384C GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_535449
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002584/2020
 AT1- C241T C346T C3037T C4002T G10097A T10721A C13536T C14408T G15543T C16830T C22388T A23403G C23731T C26204T C28054T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_535451
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002586/2020
 C241T C3037T T8875A G11447A G13459T C14408T C22675T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535454
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002589/2020
 C241T C3037T T8875A G11447A G13459T C14408T C22675T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535458
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002593/2020
 ATT1- C241T C3037T T8875A G11447A G13459T C14408T C22675T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535472
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002608/2020
 AT1- G204T C241T C3037T T5422C G5470A C7051T G7743T C12880T C14408T A20268G A23403G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535480
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C8480T T9508C C14408T C22675T A23403G G23868T G24794T C25350T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_535487
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002624/2020
 C241T C2676T C3037T G9856T T12503C C13605T C14408T T15636C A23403G C25587A A28761C G28809T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535496
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A8065G G11447A C14408T T19797C C22675T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535513
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002643/2020
 ATTA1- C241T C3037T C5986T T12503C C14408T C16490T A23403G G25770T GGG28881AAC C29721T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_535515
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6840T G11447A C14408T C22675T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535532
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T12503C C14408T A23403G GGG28881AAC C29721T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_535534
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002668/2020
 A1- C241T C3037T C6840T G11447A C14408T C22675T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535539
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002673/2020
 ATTAAAGGTTTATACC1- C241T C1427T G2801A C3037T C6449A C14408T T22672C A23403G GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_535545
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002681/2020
 A1- C241T C1427T G2801A C3037T C6449A G11417T C11758T C14408T G19109T T22672C A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535546
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002682/2020
 ATTAAAGGTTTA1- C241T C3037T T12503C C13051T C14408T C21575T A23403G GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535547
 2020-08-01 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002684/2020
 ATTA1- C241T C1427T G2801A C3037T C6449A C14408T T22672C A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536964
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24023T GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536981
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961D0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4927T C5183T A8072G C14408T C17977Y A23403G G25166C G25555T GGGGAACTT28881- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536985
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C10369T C14408T C18744T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536988
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9617D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C6395Y C11124T C14183T C14408T G14792T C15848T G19254T T19893C A21137G G22335T A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537013
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T G2035T C3037T G8102T A13928G C14408T C18744T A18978G G21809A A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537025
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5558R C14408T T21570K C21575T A23403G C24023T GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537030
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961DEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537031
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961C5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537075
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9619FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7173T C8991T C11289T C14408T T15051C A20255G G21255C A23403G G28166A GGG28881AAC C28961T G29090T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537084
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9619DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537092
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C6675T C7528T C11124T C14408T C15848T G19254T T19893C C20703T A23403G C25889T C26151T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537093
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/Wales/QEUH-961E55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537097
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3100G A5877G C6070Y G10097A C11416T C14408T C15390T A20055G A23403G C23731T C24370T G25947T T28723C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537110
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96173C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C635Y A2501G C3037T C6395T G10565C G11804A A12410G C14408T A18366G C18788T T19839C T21093C A23403G C26645Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537116
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC A29172T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537119
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9617F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537129
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9617E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083K C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537137
 2020-08-01 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9616E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2501G C3037T C6395T G10565C C10741T G11804A A12410G C14408T A18366G C18788T T19839C T21093C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539567
 2020-08-01 2020-09-18
 Spain hCoV-19/Spain/ML-ISCIII-2013686/2020
 C241T C3037T C5055T G11851T C14408T C14786T T20407C C22432T A23403G G24812T C26895T GGG28881AAC -29904AAAAAAAAAAAAAAAAAAAAAAAAAA

EPI_ISL_539568
 2020-08-01 2020-09-18
 Spain hCoV-19/Spain/ML-ISCIII-2013688/2020
 C241T C3037T C8025T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC C29197T G29227T

EPI_ISL_541904
 2020-08-01 2020-09-23
 Spain hCoV-19/Spain/MD-IBV-99007131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T T445C C3037T C6286T C14408T G21255C G21399T C22227T A23403G C26801G C27944T C28932T G29645T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_547655
 2020-08-01 2020-09-24
 United States hCoV-19/USA/WI-GMF-13319/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C715T C1059T G2036T C3037T C4686T G7042T C11916T C14408T G23311T A23403G A23586G G25563T G27948C C28657T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547656
 2020-08-01 2020-09-24
 United States hCoV-19/USA/WI-GMF-13352/2020
 A1- C241T C1059T G2089A C3037T C14408T C15324T C16260T C21575T C21622T A23403G G24173T G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547657
 2020-08-01 2020-09-24
 United States hCoV-19/USA/IA-GMF-13403/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C4686T A10323G C14408T T15276A A23403G G25563T G28842T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548347
 2020-08-01 2020-09-26
 United States hCoV-19/USA/CA-CZB-3634/2020
 ATTA1- C241T C1059T C3037T C9072T G10345A C14408T C16260T T18435G A23403G G25563T C26942T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548588
 2020-08-01 2020-09-26
 United States hCoV-19/USA/CA-CZB-4017/2020
 A1- C241T T322Y C1288T C3037T C14408T C17421Y A20268G C20759T A23403G T24076C T28735C C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_548618
 2020-08-01 2020-09-26
 United States hCoV-19/USA/CA-CZB-4007/2020
 ATTAAAGGTTTATACC1- T209W C241T C1288T C3037T C14408T A20268G C20759T A23403G T24076C T28735C C28854T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_548621
 2020-08-01 2020-09-26
 United States hCoV-19/USA/CA-CZB-4019/2020
 C241T C1288T C3037T C14408T G17608T A20268G C20759T G22199T A23403G T24076C T28735C C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_548624
 2020-08-01 2020-09-26
 United States hCoV-19/USA/CA-CZB-4011/2020
 AT1- C241T C1288T C3037T C14408T A20268G C20759T A23403G T24076C T28735C C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548630
 2020-08-01 2020-09-26
 United States hCoV-19/USA/CA-CZB-4005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACT1- C241T C1288T C3037T C14408T G16122K A20268G C20759T A23403G T24076C T28735C C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548636
 2020-08-01 2020-09-26
 United States hCoV-19/USA/CA-CZB-4018/2020
 ATTAAAGGTTTATAC1- C16M C241T C1288T C3037T C14408T A20268G C20759T A23403G T24076C T28735C C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_548639
 2020-08-01 2020-09-26
 United States hCoV-19/USA/CA-CZB-4015/2020
 ATT1- C241T C1288T C3037T C14408T C20132T A20268G C20759T A23403G T24076C T28735C C28854T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_548643
 2020-08-01 2020-09-26
 United States hCoV-19/USA/CA-CZB-4008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGT1- C241T C1288T C3037T C14408T A20268G C20759T A23403G T24076C T28735C C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548656
 2020-08-01 2020-09-26
 United States hCoV-19/USA/CA-CZB-4006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTC1- C123Y C241T C1288T C3037T G10300K C14408T A20268G C20759T A23403G T24076C T28735C C28854T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_548658
 2020-08-01 2020-09-26
 United States hCoV-19/USA/CA-CZB-4020/2020
 ATTAAA1- C241T C1288T C3037T C14408T A20268G C20759T A23403G T24076C T28735C C28854T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_548672
 2020-08-01 2020-09-26
 United States hCoV-19/USA/CA-CZB-4010/2020
 ATTAAA1- C241T C1288T C3037T C14408T A20268G C20759T A23403G T24076C T28735C C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_549059
 2020-08-01 2020-09-28
 Norway hCoV-19/Norway/2957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C14760T C18877T C22444T A23403G G25563T C26735T G26828T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549063
 2020-08-01 2020-09-28
 Norway hCoV-19/Norway/2999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549065
 2020-08-01 2020-09-28
 Norway hCoV-19/Norway/3001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549101
 2020-08-01 2020-09-28
 Norway hCoV-19/Norway/2975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6366G G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T A20255C A23403G C23707T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550438
 2020-08-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9789A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1662T C1973T C3037T C3261T C4456T C5621T G9479T A11430G C14408T A20288C C21058T A23403G C25624T G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550439
 2020-08-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-97893C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C25844T C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550470
 2020-08-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-97894B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G T25139C T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550498
 2020-08-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-978A66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T C15371T T23371C A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550503
 2020-08-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-978987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C5907T C13247T C14408T C14937T T18144C A23403G C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560607
 2020-08-01 2020-09-29
 France hCoV-19/France/BR8939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560608
 2020-08-01 2020-09-29
 France hCoV-19/France/BR8940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563029
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC10680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_563032
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC10689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563039
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC10700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T C15928T G16647T C18555T C20544T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563100
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC10808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C10341Y C14408T C15324T G16647T C16887T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563185
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC10989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T26494G T26497C C27059T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563187
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC10992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C2227T C3037T T7540C A13488G C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G C24897T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563193
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC11004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563243
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC11088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563744
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC13545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563763
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC13576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G C26270T A27932G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563785
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC13613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T727C A1163T C3037T T7540C A14084G C14408T G16647T C18555T G21809T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564218
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C6033T T7540C C11902T C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564219
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G A27932G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564223
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C T10084W C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A C26469Y GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564224
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C66T C241T A1163T C3037T G6710K T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564225
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T C20189Y G22992A G23401A A23403G C24351T T25111A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564226
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564227
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C T13210Y C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564228
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T C22120T G22992A G23401A A23403G C24351T T25111A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564229
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A C28256Y GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564230
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564231
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564232
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564233
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C11289Y T14394Y C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC C29272Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564234
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564235
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564341
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564576
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T C5183Y T7540C C14408T G16647T C18555T C19366Y A20288C C22480T G22992A G23401A A23403G C27059T GGG28881AAC C29274Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564589
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T A1739C C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564590
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C A9685G A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564591
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2574Y C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564592
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC7704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A7394R T7540C A11862R C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565072
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC8523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565073
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC8524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C1800T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565074
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC8525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C23855T C27059T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565075
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC8526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T C4582T T7540C C14408T G16647T C17410T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565076
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC8527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T C3096T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C23525Y C25511T C27059T GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_565118
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC8627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5144T T7540C C12924T C14408T G16647T C18555T G22992A G23401A A23403G G27281T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565211
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC8813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17649T C18555T A18846G G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565213
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC8815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T T22348Y G22992A G23401A A23403G C24351T T25111A GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_565214
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC8816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565352
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC9008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T A7394R T7540C A11862R C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565368
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC9039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C10332T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C24852T T27957C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565369
 2020-08-01 2020-09-30
 Australia hCoV-19/Australia/VIC9040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C10332T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C24852T T27957C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_569621
 2020-08-01 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0013/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T C3037T G6052A C6968T C10319T C14408T G19872T G20102T C20117T G22026T A22095G A23403G G25563T G25855T C27964T G29254T G29474T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MT905416
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT905417
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT905418
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT905419
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT905420
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT905421
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT905422
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT905423
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT905424
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT905425
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT905426
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT905427
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT905428
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT905429
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT905430
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT905431
 2020-08-01 2020-08-20
 Egypt SARS-CoV-2/human/EGY/Egy-S019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MW010028
 2020-08-01 2020-09-16
 Egypt SARS-CoV-2/human/EGY/EGY-MCL-ARC-VSVRI-ECRRM-151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MW010029
 2020-08-01 2020-09-16
 Egypt SARS-CoV-2/human/EGY/EGY-MCL-ARC-VSVRI-ECRRM-152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_512842
 2020-08-02 2020-08-12
 Singapore hCoV-19/Singapore/806/2020
 ATTAAAG1- C241T C3037T G5924A G6943T C14408T T21775G C22127T A23403G GGG28881AAC C29784T AAAAAAAAAAAA29892-

EPI_ISL_514443
 2020-08-02 2020-08-17
 United Kingdom hCoV-19/England/CAMB-1B55CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1620G C3037T C4002T G5425T A6604G G10097A C11620T C13536T C14408T TACATG21765- A23403G C23731T G23948C C27059T A28356G GGG28881AAC G29825T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514518
 2020-08-02 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514519
 2020-08-02 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C21575T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514520
 2020-08-02 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514521
 2020-08-02 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514522
 2020-08-02 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514523
 2020-08-02 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516468 MT928996
 2020-08-02 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516520 MT929045
 2020-08-02 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516524 MT929049
 2020-08-02 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17518T C18877T A23403G C23707T G25563T G27659C C28890T T29710A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516559 LR882302
 2020-08-02 2020-08-21
 Switzerland 230016
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T7035W T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G G21770D C22879A A23403G T24910C T26972C C27800A C27855M G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516561 LR882304
 2020-08-02 2020-08-21
 Switzerland 230018
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A30H C241T C3037T C3373A C14358T C14408T G17443K A23403G C25413T G25690T T27134C G27214R GGG28881AAC T29867W AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_516562 LR882307
 2020-08-02 2020-08-21
 Switzerland 230019
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T6934Y T7035W T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C22879A A23403G T24910C G26730K T26972C C27800A C27855M G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517572
 2020-08-02 2020-08-24
 United Kingdom hCoV-19/England/SHEF-CFBC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523539
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10033C C12733T G12849A C14408T C21621T A23403G C24213T G28090T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523540
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A10323G C14408T T15696G C20480T A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523541
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T CTAGTT11280- G12191T C14408T T16479C A23403G C25587T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523700
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523701
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A A23403G C24463T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523702
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G G25455T A25505G G25906C G25996T G28079T C28651T C28869T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523704
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T T1918C C3037T T4640C C4655T C5512T C6195T C7119T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G C25000T G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523705
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C10741T C14408T G19480A A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523706
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T T1918C C3037T G3308A T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A G25621T T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523707
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G C21622T A23403G G25563T G25565A C25624T T27342C G28655T T29317C G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523709
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A C25624T T27342C G28655T T29317C G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523710
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T T1918C C3037T T4640C C5512T C6195T C7119T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523711
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C8645T C9246T C11109T C12415T C14408T C17750T G17790T T19159G G20627A A23403G G24821T G25563T G25565A A26234C T27342C G28655T G29593T G29781T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523713
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T T1918C C3037T T4640C C5512T C6195T C7119T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523714
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A C25624T T27342C G28655T T29317C G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523715
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1060T C1594T T1918C C3037T T4640C C5512T C6195T C7119T C9246T C11109T C12415T C14408T C14913T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523716
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523717
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523718
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G G25563T G26389T C26735T T26876C C28311T C28854T A28900C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523719
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28077T G28655T G29179T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523720
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C8240T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A C25624T T27342C G28655T T29317C G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523722
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T T1918C C3037T T4640C C5512T C6195T C7119T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523723
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T CTAGTT11280- G12191T C14408T T16479C A23403G C25587T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523724
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A G25987T T27342C C28637T G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523725
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A C25624T T27342C G28655T T29317C G29402T G29757T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523726
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1487A G2447T C2695T C3037T G5194T A5560G G10265A G11083T C14408T C14484T G14500T C15141T A15972G G18105A A18846G T19497C C19718T C19806T C21077T A23403G G26235T G28077T C28677T T28759C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523728
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5704T C14408T C21660T A23403G T24214C C25904T C26461T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523729
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C10369T C13671T C14408T G17278T G21255C C22227T GCTTTA22289- A23403G C26801G C28932T G29645T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523730
 2020-08-02 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_529644
 2020-08-02 2020-09-10
 United Kingdom hCoV-19/England/BIRM-63584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530254
 2020-08-02 2020-09-11
 Australia hCoV-19/Australia/QLD994/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC C29870M

EPI_ISL_530938
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T G9463A C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC A29407G T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531926
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FC6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2992C C3037T G11447A C14408T C21648T A23403G G25302A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531939
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9611E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2263T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T C19032T A20268G TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531940
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-961286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T C11074Y G11083T C11379T C14408T C21234T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531952
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96080D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T G2531T C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531955
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960F71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1185T C1450T T2124C C3037T C4002T G10097A C13536T C13743T C14408T C15738T G23236T A23403G C23731T G25720T G26065T GGG28881AAC -29682TAATC A29687W CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531957
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96059D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15720Y A23403G C24023T GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531959
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531960
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96107D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C9693T C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29218T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531980
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960C98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T A3801G C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531996
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9608B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T C26447Y GGG28881AAC C29545T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531998
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9601B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532042
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96106E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T G9463A C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC A29407G T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532073
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960B8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532095
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9602C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532109
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960C5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C10369T C14408T C18744T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532111
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532122
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960AAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4832T C11289T C14408T T15051C A20255G A23403G G25690T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532136
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960CD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7299T G11083T C14408T C18526T A20268G C21614T G22225C A23403G C28603T C28854T C29167T G29648T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532295
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FB17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1564C C3037T T10933C G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532339
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FC23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2992C C3037T G11447A C14408T C21648T A23403G G25302A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532352
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FA83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T G28817K GGG28881AAC C29197Y G29227K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532366
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FB08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T G960T C3037T C3261T G12067T C14408T A15984T C18959T C20946T C22075T A23403G C27945T G28086T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532386
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FA38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C14408T T20653C C21637T A23403G G24368T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532473
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-961EDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5305A A5958G C6629T C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532505
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FAED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24023T GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532564
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-94375E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5554T C14408T G19891T C21575T C22938A A23403G C24034T G25249T G25785T G26152T C27532T G28321T GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532572
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9436E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3587T C7043T G7936A G8726A A10912G C11572T C14408T T14530G G18756T G22343A A23403G C28308T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532598
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-943712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3587T C7043T G7936A G8726A A10912G C11572T C14408T T14530G G18756T G22343A A23403G C28308T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532620
 2020-08-02 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-943703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3587T C7043T G7936A G8726A A10912G C11572T C14408T T14530G G18756T G22343A A23403G C28308T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534232
 2020-08-02 2020-09-11
 Sweden hCoV-19/Sweden/20-08950/2020/P1
 C241T C3037T A13712G C14408T G14874T C15738T A23403G GGG28881AAC

EPI_ISL_534419
 2020-08-02 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-961BB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C2113T C3037T C7765T C9430T C14408T C17690T C18877T A23403G G23782T G25563T A28336G A28959G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535501
 2020-08-02 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T G1820A C3037T G11447A C14408T T15918C C22675T A23403G G28077T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_535506
 2020-08-02 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002636/2020
 ATTAAAGGTT1- C241T C3037T C4002T G10097A C13536T C14408T C18747T C19586T G21974C A23403G C23731T C28253T G28307T GGG28881AAC G29425T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535511
 2020-08-02 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002641/2020
 ATTAAAGGTTTA1- C241T C1063T C1348T C2094T T2432C C3037T C14408T G16853T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535512
 2020-08-02 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002642/2020
 ATTA1- C241T C3037T A7064G C10036T C14408T C22675T A23403G C25521T C26586T T27384C GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_535514
 2020-08-02 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6762T T12503C C14408T A22101G A23403G G25455T G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535519
 2020-08-02 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C180T C241T C1063T C1348T C2094T T2432C C3037T C14408T G16853T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535522
 2020-08-02 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2094T C3037T C6762T C14408T A23403G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535536
 2020-08-02 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002670/2020
 C241T G376T C3037T C4021T C4543T C6762T G11230T T12503C C14408T A15779G T23296C A23403G T23407C G25770T A28653G GGG28881AAC C29721T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535537
 2020-08-02 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1469T C3037T C14408T T17351C A20268G G22132A A23403G G27659T G29751C TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535541
 2020-08-02 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002676/2020
 ATTAAAGGTT1- C241T C3037T C4002T G10097A C13536T C14408T C15108T C18747T C23248T A23403G C23731T C26801T GGG28881AAC G29425T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535543
 2020-08-02 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G174A C241T C3037T A7064G C14408T G19816T C22675T A23403G C24990T C25521T C26586T T27384C G27877T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_536975
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9619AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C G2072A C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536976
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961A7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536986
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7299T G11083T C14408T A20268G C21614T A23403G C28603T C28854T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536993
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-961A51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T A25817G G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536994
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-961BC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T C16887T T19839C C21646T A23403G A24205T C25613T C26208T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537026
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9616A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537032
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961D94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537039
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961A8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537050
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961B03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C7609T C11124T C14408T G14792T C15848T C16289T C17135T G18149T G19254T T19893C A23403G C25889T C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537057
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9614BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7299T G11083T C14408T A20268G C21614T A23403G C28603T C28854T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537060
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A G22225T A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537062
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961D3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C A5667T A6597G C9924T C12651T C14408T G14923A G21624T C22006T A23403G G25699A C26270T G26416S G28628T GGG28881AAC A29403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537066
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-961BE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537072
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961AE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A13113G C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537079
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9617C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G20102T G21624T A23403G G25500T C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537094
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-961ACA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537096
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-961A42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537100
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C23996T G24893C C25831T C26801G G27996T G28436T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537102
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-961A33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T C16887T T19839C C21646T A23403G A24205T C25613T C26208T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537106
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9614AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537123
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961DA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537136
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-961AD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537143
 2020-08-02 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-961BF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547676
 2020-08-02 2020-09-24
 United States hCoV-19/USA/WI-GMF-M00026/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C715T C1059T G2036T C3037T C4686T C11916T C14408T G23311T A23403G A23586G G25563T C26204T G27948C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549064
 2020-08-02 2020-09-28
 Norway hCoV-19/Norway/3000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT C10519T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549066
 2020-08-02 2020-09-28
 Norway hCoV-19/Norway/3002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549090
 2020-08-02 2020-09-28
 Norway hCoV-19/Norway/2961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6402T A9185G C14408T A16734G A20268G C21638A A23403G G24794T C25810T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549950
 2020-08-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6AF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G4255A T7767C C8047T C11152T G11516T T13212C C13372T C14408T C17104T T19242C A20268G C22879A A23403G C23664T C25624T G27659T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560609
 2020-08-02 2020-09-29
 France hCoV-19/France/BR8941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T G5210A C14408T C15324T C17470T C21191T A23148G A23403G T27125C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562602
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC10778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8650Y C14408T G16647T A17337G C18555T C22858T G22992A G23401A A23403G -25700CCC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562960
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC10564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562979
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC10598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_562987
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC10609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25624Y A26162G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562993
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC10616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T19305C G22992A G23401A A23403G G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563035
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC10694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563058
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC10727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C18683T C22323T G22992A G23401A A23403G G24102C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563081
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC10771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C A10880T C14408T G16647T C18555T G22992A G23401A A23403G C26326T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563117
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC10832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G G26918A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563192
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC11000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563298
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC11211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C3737T T7540C C14408T G16647T C18555T C19217T G21255C G22992A G23401A A23403G C28725T GGG28881AAC G29315C TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563345
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC11364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563751
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC13554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C G14335T C14408T G16647T C18555T C22480T G22992A G23401A A23403G TT25794AA T27957C GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_563753
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC13558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC G29764K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563761
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC13573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T9013C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563764
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC13581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4003C T7540C C12076T C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC G29579A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563784
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC13611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563786
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC13617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_563787
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC13619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564171
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC6974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_564174
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC6977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564237
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564396
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564579
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564584
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC C29585T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564588
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T A1163T C3037T T7540C A14084G C14408T G16647T A17047R C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC C29585T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_564600
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564606
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A4411W T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564634
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T A17611G C17850T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564636
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G G28476K GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564638
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564639
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564640
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC G28895T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564641
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G C28256Y GGG28881AAC G28895T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564643
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564644
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G C28256Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564645
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564646
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC G28895T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564647
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564648
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564649
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G C26601M GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564650
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564651
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C16887Y C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564652
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564656
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564658
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564659
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G12274A C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564660
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G C28256Y GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564666
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G C28256Y GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564667
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7799/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564669
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17502Y C17850T C18555T G22992A G23401A A23403G A25018R C26469Y C28256Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564670
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C11109T C14408T A16431R G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564672
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564673
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC G28895T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564674
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC7814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G C28256Y GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565077
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC8528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G11083T C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565121
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC8630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565122
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC8631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_565210
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC8811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565215
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC8818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C106T C241T A1163T C3037T C5869T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565216
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC8819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29096R AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565627
 2020-08-02 2020-09-30
 Australia hCoV-19/Australia/VIC9615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_507159
 2020-08-03 2020-08-03
 United Kingdom hCoV-19/England/PORT-2D4003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T C9360T G11083T C14805T G26144T C26340T G28851A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_507228
 2020-08-03 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII10223S/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C14408T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507292
 2020-08-03 2020-08-03
 Russia hCoV-19/Russia/StPetersburg-RII4586S/2020
 C241T C3037T C14408T A23403G C26750T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507297
 2020-08-03 2020-08-03
 Russia hCoV-19/Russia/Ufa-RII12-5800V/2020
 AT1- C241T C379A C1059T C2939T C3037T C14408T A23403G G25563T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507298
 2020-08-03 2020-08-03
 Russia hCoV-19/Russia/Ufa-RII21-5809V/2020
 ATTA1- C241T C379A C1059T C2939T C3037T C14408T C17491T A23403G G25563T G28487A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_507299
 2020-08-03 2020-08-03
 Russia hCoV-19/Russia/Ufa-RII5-5798V/2020
 C241T C379A G526A C1059T C2295T C2939T C3037T C14408T C17491T A23403G G25563T T27384C G28960T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_510544
 2020-08-03 2020-08-07
 Australia hCoV-19/Australia/SAP480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A8651C C14408T G15594T G16647T C18555T G18973T C21005T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_514345
 2020-08-03 2020-08-17
 United Kingdom hCoV-19/England/203290061/2020
 AT1- C36T C241T C274T C2062T A2810G C3037T C6395T A10317G A11782G A12410G C14408T C16323T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_514349
 2020-08-03 2020-08-17
 United Kingdom hCoV-19/England/203290066/2020
 ATT1- C36Y C241T C274T C2062T A2810G C3037T C6395T A10317G A12410G C14408T C16323T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_514514
 2020-08-03 2020-08-17
 United Kingdom hCoV-19/Scotland/CVR3962/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C999T C1912T C3037T G4180T C4683T T10453C C11195T G13348T C14408T G14866A G17278T C21811T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514517
 2020-08-03 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C G3307A C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514524
 2020-08-03 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514526
 2020-08-03 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514527
 2020-08-03 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G A24409G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514528
 2020-08-03 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514529
 2020-08-03 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514530
 2020-08-03 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514531
 2020-08-03 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514534
 2020-08-03 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C26889T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514535
 2020-08-03 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514536
 2020-08-03 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514561
 2020-08-03 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515196
 2020-08-03 2020-08-18
 Latvia hCoV-19/Latvia/109/2020
 C241T A1202G C3037T C12513T C13730T C14408T C18877T A23403G G25563T C25710T G27877T G28881A

EPI_ISL_516455 MT928983
 2020-08-03 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C5020T C6285T C12855T C14408T C19524T C20429T A23403G G27788C C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516460 MT928988
 2020-08-03 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2549A C3037T C9448T C10815T C14408T C14599T G15732T T19143C C19806T A20268G A23403G C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516462 MT928990
 2020-08-03 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T580A C1059T C3037T C3773T C7086T T14191C C14408T C16260T A18298G A23403G G23900C A24253T G25563T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516467 MT928995
 2020-08-03 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T580A C1059T C3037T C3773T C7086T C7528A T14191C C14408T C16260T A18298G A23403G G23900C A24253T G25563T C25603T C28821A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516478 MT929005
 2020-08-03 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T A7958G C8320A C11956T C12025T C14396T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516506 MT929032
 2020-08-03 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16446C A20268G A23403G G24328T G25839T C27903T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516563 LR882308
 2020-08-03 2020-08-21
 Switzerland 230020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C815T C3037T G3083K C6286T A6948M C14408T G21255C C22227T A23403G C26801G C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516564 LR882320
 2020-08-03 2020-08-21
 Switzerland 230021
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T2913Y T2934W C3037T T3086Y C3096M T3144K T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G G21770R C22879A A23403G T24910C T26972C C27800A C27855M T28071W G28073R G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516565 LR882322
 2020-08-03 2020-08-21
 Switzerland 230022
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T7035W T7767C C8047T G12988T C14408T G14831K A15302G G15598A G16117K C17104T G18028T A20268G T22673W C22879A A23403G T24910C T26972C C27800A G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516568 LR882323
 2020-08-03 2020-08-21
 Switzerland 230025
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G411R C584Y A2905W A2958M C3037T G3125R G3239A G3433T T5517W A5563M T10063Y C14408T C15324T T17142W T17688Y G21334T T21889C CA23121SH A23403G C26885T C27406A G28380A G28655A G28881A A29368R C29721T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516581
 2020-08-03 2020-08-21
 Switzerland hCoV-19/Switzerland/230042_746_H04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T C5622Y T7035W C8619T G9130T C14408T C16111T A23403G C24370Y T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516582 LR882351
 2020-08-03 2020-08-21
 Switzerland 230043
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C3738T C8619T G9130T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517596
 2020-08-03 2020-08-24
 United Kingdom hCoV-19/Wales/PHWC-169B6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_525394
 2020-08-03 2020-08-29
 Ireland hCoV-19/Ireland/71IRL98494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525755
 2020-08-03 2020-09-01
 United States hCoV-19/USA/WA-S2765/2020
 ATTAAAGGTTT1- C241T C3037T C14408T T19839C C20148T A23403G G27948T GGG28881AAC C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_526585 MT956709
 2020-08-03 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1099/2020
 AT1- C241T C3037T C6628T C12473T C14408T C16799A A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_526586 MT956710
 2020-08-03 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1100/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T A3830G C10319T C14408T A15779G C16887T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_527602 MT958234
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C5646T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527603 MT958235
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_527604 MT958236
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C11575T C14408T G15732T C19029T A20268G C21575T T21808A A23403G G28373T C28854T T29471C G29747A TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_527605 MT958237
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_527606 MT958238
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_527607 MT958239
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1542/2020
 ATTAAAGG1- C241T C3037T G4207T C5646T C11575T C14408T C19029T G19060A A20268G T21808A A23403G G28373T C28854T G29747A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_527608 MT958240
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527609 MT958241
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4207T C5646T C11575T C14408T C19029T G19060A A20268G T21808A A23403G G28373T C28854T G29747A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_527610 MT958242
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1545/2020
 ATTA1- A38R C241T C3037T G4207T C5646T C11575T C14408T C19029T G19060A A20268G T21808A A23403G G28373T C28854T G29747A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527611 MT958243
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- A38G C241T C3037T C5646T C11575T C14408T C19029T G19060A A20268G T21808A A23403G G28373T C28854T G29747A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_527612 MT958244
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C398T C3037T C11575T C14408T C19029T C20031T A20268G T21808A A23403G G28373T C28854T C29272T G29747A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527613 MT958245
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527614 MT958246
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5646T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862C

EPI_ISL_527615 MT958247
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T G4207T C5646T C11575T C14408T C19029T G19060A A20268G T21808A A23403G G28373T C28854T G29747A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_527616 MT958248
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6286T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527617 MT958249
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1552/2020
 ATTAAAGGTT1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_527618 MT958250
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_527619 MT958251
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T G4207T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527620 MT958252
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C11575T C14408T C19029T A20268G T21808A A23403G G28373T C28854T G29747A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_527621 MT958253
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C11575T C14408T C19029T G19060A A20268G T21808A A23403G G28373T C28854T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687C

EPI_ISL_527622 MT958254
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- T83C C241T C583T C1059T G2468A C3037T A5011C C14408T C17410T G22471S A23403G A23998G C25553T G25563T T27856C C28893T G29543T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_527623 MT958255
 2020-08-03 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C16260T C16952T A23403G G23900C A24253T G25563T C28821A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_529028
 2020-08-03 2020-09-09
 United Kingdom hCoV-19/England/20358026204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7200Y C9870Y A12458R C14408T A23403G GGG28881RRS CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529587
 2020-08-03 2020-09-10
 United Kingdom hCoV-19/England/ALDP-988483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11923G C14408T C16915T G17523T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529588
 2020-08-03 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9884B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T G21867T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529589
 2020-08-03 2020-09-10
 United Kingdom hCoV-19/England/ALDP-988C4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11923G C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530129 MT997242
 2020-08-03 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2772/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C5284T A8010G G9802T C14408T A20268G A23403G T24076C C26801T G28079T C28854T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_530172 MT997694
 2020-08-03 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1576/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C16260T C16952T A23403G G23900C A24253T G25563T C27925T C28821A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_531871
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FD99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531891
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FD02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531899
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96020F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T G22344T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531901
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96022D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T595C C3037T A8244G G8408A G12191T C14408T C19488T A23403G T26171A C28500T GGG28881AAC G29254A C29409T G29474T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531903
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96021E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G23501K G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531906
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FDD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531916
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FE5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5144T T5158C C5812T C5826T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC A29756G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531948
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960A16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C G1820A C3037T T3508A C6286T C13671T C14408T G21255C G22035T C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531949
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9602D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T16374C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531950
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9605E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G5206T C11200T C14408T C18698T G20691T G21746A A23403G TT28822AC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531961
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9605CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12145G C14408T C20759T C21676T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531974
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9605BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T C7973T T10453C C11195T C14408T A23403G T25139C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531997
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9606D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532009
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9612B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24023T GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532025
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-961295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532030
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-961040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532041
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96015D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C11152T C14408T T17742C A23403G C26058T GGG28881AAC A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532045
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96065E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A C11124T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532046
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96064F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3873C A8072G C14408T T15357C A23403G C23613T G23663T G24095A G28655T GGG28881AAC C29171T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532047
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532050
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960B7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2570T C3037T A7031G G13617T C14408T C15324T C22498T A23403G C24381T G28328A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532056
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9606C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G5206T C11200T C14408T C18698T G20691T G21746A A23403G TT28822AC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532058
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9612C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532070
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96115C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532075
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9608EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T C26447T GGG28881AAC C29545T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532088
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532089
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9612D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G598K C3037T C3602T C6941T C14408T C15324T A17155G C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532090
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96124A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532092
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96025A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532106
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-961022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1720C C1968T C3037T G3483T G10097A T10992C C11001T G13425A C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532129
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96112F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532369
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FBF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532415
 2020-08-03 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FC14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534406
 2020-08-03 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-961E37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8917T G9389A C11074T C14408T G22708A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535503
 2020-08-03 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002633/2020
 A1- C241T C3037T C6762T G8017T T12503C C14408T C21846T A23403G G25770T GGG28881AAC C29721T AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_535504
 2020-08-03 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002634/2020
 A1- C241T C3037T A7064G C7093T C9636T C14408T C22675T A23403G T27384C G28347T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_535509
 2020-08-03 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1063T C2094T T2432C C3037T C14408T G16853T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_535516
 2020-08-03 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002646/2020
 ATTAAAGG1- C241T C1063T C2094T T2432C C3037T A3423C C14408T G16853T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535520
 2020-08-03 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002650/2020
 ATTAAAGGTT1- C241T T2378A C3037T A8285G G11447A C14408T C19011A C22675T A23403G C25553T G28077T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535523
 2020-08-03 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1288T C3037T C4002T G10097A T11362C C13536T C14408T G17592T C19983T A23403G C23731T G25606T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_535526
 2020-08-03 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8480T T9508C C14408T C22675T A23403G G23868T G24794T C25350T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_535529
 2020-08-03 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002661/2020
 ATTAAAGGTTTATAC1- C241T C1288T C3037T C4002T A7525G G10097A T11362C C13536T C14408T G17592T C19983T A23403G C23731T G25606T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535531
 2020-08-03 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002665/2020
 ATT1- C241T C3037T C4002T G10097A C13536T C14408T C18747T G20060T A23403G C23731T GGG28881AAC G29425T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535542
 2020-08-03 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002678/2020
 AT1- A55G C241T C1427T G2801A C3037T G11243A C14408T A23403G C26028T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535544
 2020-08-03 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T C556T C3037T A6308C C14408T A16172G C21621T C23380T A23403G G25644T G25753T G28001T G28357T GGG28881AAC G29711T C29774T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535551
 2020-08-03 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C9113T C14408T G17122T A19047G G22343T A23403G C28005T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_536968
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536977
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-961CE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T C16887T T19839C C21646T A23403G A24205T C25613T C26208T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536979
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961A24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2299T C3037T G3955T G5008T TCAAATTCG6329- C6539T C14408T A23403G G23426T C23655T T25663C C26936T A28792W GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536984
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537009
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537010
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961A15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- C2299T C3037T G3955T G5008T TCAAATTCG6329- C6539T C14408T A23403G G23426T C23655T T25663C C26936T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537018
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9614EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T G9463A C14408T G15438T A23403G C25207T T26160C G26918T C27513T C28453T GGG28881AAC A29407G T29464C C29754T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537024
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-961D58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T C16443T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537028
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-961C97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537029
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537038
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96168A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5065Y C14408T A23403G C24023T GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537049
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10097A G10688A G13240A C14408T C16332T C19983T C20389T T22282C A23403G C23683T C23731T C25782T G28048T G28580T GGG28881AAC C29514T A29700R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537055
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9615E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T G9463A C14408T G15438T A23403G C25207T T26160C G26918T C27513T C28453T GGG28881AAC A29407G T29464C C29754T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537056
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961DFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537064
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9618EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203Y C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537069
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96170F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C6318T C13665T C14318T C14408T C15960T T16401C G16741T G20580T C21234M A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537080
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961B21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219C C241T C1347T C3037T C14408T G18412T C20736A C21637T A23403G G25644T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537105
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961CA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537112
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9616D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24023T GGG28881AAC C29073T G29540K G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537118
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-961C88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T C16887T T19839C C21646T A23403G A24205T C25613T C26208T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537120
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9616F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1325T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537133
 2020-08-03 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9615AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7299T G11083T C14408T A20268G C21614T A23403G C28603T C28854T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539841 MW020078
 2020-08-03 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1647/2020
 ATTA1- C241T C1059T C3037T C3411T C3773T C7086T T14191C C14408T C16260T A23403G G23900C A24253T G25563T C28821A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539886
 2020-08-03 2020-09-21
 Sweden hCoV-19/Sweden/20-52480/2020
 C241T C3037T C7267T C9120T C14408T C18032T C20233T A23403G G24926T A27674T CA28253TC GGG28881AAC A29350G

EPI_ISL_540590
 2020-08-03 2020-09-21
 United Kingdom hCoV-19/England/LIVE-AA9A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4926C T8296C C14408T A18184G G21624T G22344T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540610
 2020-08-03 2020-09-21
 United Kingdom hCoV-19/England/LIVE-AACC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G25540R G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540629
 2020-08-03 2020-09-21
 United Kingdom hCoV-19/England/LIVE-ABCB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC C29870M

EPI_ISL_541205
 2020-08-03 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1273/2020
 ATTA1- C241T C379A A385C C1059T T2153C C2268T C3037T G4657A G7393T C8950T G11851A C14408T G21578T A23403G G25563T C25703T T26331C C27297T G28842T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_547436
 2020-08-03 2020-09-24
 United Kingdom hCoV-19/Gibraltar/203260482/2020
 ATTAAAGGTTTA1- C241T C3037T C5055T GT5743SY G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC AAAAAAAAA29895-

EPI_ISL_548616
 2020-08-03 2020-09-26
 United States hCoV-19/USA/CA-CZB-4050/2020
 T2Y C241T C3037T C5512T G7936T C11704T T14067C C14408T A22759G A23403G C27219Y GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_548655
 2020-08-03 2020-09-26
 United States hCoV-19/USA/CA-CZB-4004/2020
 AT1- C241T C593T G2144K A2251G C3037T G3206K G13459T G14055T C14408T A18992R A20268G C20759T C21054Y G21746C A23403G T24076C G24872T C28854T G29414T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548669
 2020-08-03 2020-09-26
 United States hCoV-19/USA/CA-CZB-4003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGT1- C241T G347A C3037T C5239T C14408T G18149T A20268G A23403G T24076C C27199Y C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_549067
 2020-08-03 2020-09-28
 Norway hCoV-19/Norway/3003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3397T C3634T A5116G A6659G T6663C T11444C C14408T C15324T C15587T T18003C T21291C G21724T A22459T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549068
 2020-08-03 2020-09-28
 Norway hCoV-19/Norway/3004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4683T A4843G C6968T C14408T C15720T C17985T T19839C A20395G A23403G C24099T G25595A A28366G GGG28881AAC C28905T C29296T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549073
 2020-08-03 2020-09-28
 Norway hCoV-19/Norway/3014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560610
 2020-08-03 2020-09-29
 France hCoV-19/France/BR8942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T G3395T C14408T A20268G A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560611
 2020-08-03 2020-09-29
 France hCoV-19/France/BR8943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561288
 2020-08-03 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T G13126T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562168
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC13571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G A27932G G28209T G28655K GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562619
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC13645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C16222T G16647T A17337G C18555T C22858T G22992A G23401A A23403G C24034T -25700CCC GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562953
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3738T C4832T T7540C C14408T G16647T C18555T C18652Y C19170T G21800T G22992A G23401A A23403G C26571T C27213Y GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_562967
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T T1432C C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562968
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G C27128T G28817T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_562970
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T A1308R C3037T T7540C C14408T G15594T G16647T C18555T G22403K G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562971
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G6169T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G G28817T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562972
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562977
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G G28817T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562980
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5178T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562983
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C G11083K C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562985
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G C27128T G28817T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562998
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563020
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C G12191R C14408T G16647T G17122T C18555T G22992A G23401A A23403G GGG28881AAC C28961T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563051
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C T8431C C14408T G16647T C18555T G22992A G23401A A23403G C23635T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563069
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C T8431Y C14408T G16647T C18555T G22992A G23401A A23403G C23635Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563070
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T G17122T C18555T G22992A G23401A A23403G GGG28881AAC C28961T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563101
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563188
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563191
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC10999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A605G A1163T C3037T T7540C C14408T G16647T C17285T C18555T C22480T G22992A G23401A A23403G C25777T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563206
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC11023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C G12355T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563210
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC11030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563211
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC11032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563231
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC11071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C27688T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563741
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC13538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C14919T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563750
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC13553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22000Y G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563756
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC13565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A3064C C3817T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563757
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC13566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6840T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563759
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC13570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19862Y G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563766
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC13583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563771
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC13593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563774
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC13596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_563795
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC13648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C12073T A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T A24402M T27785C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564119
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC6893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C16178Y G16647T C17285T C18555T C22480T G22992A G23401A A23403G C25777T A28722T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564238
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T T1432C C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_564239
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T T1432C C3037T T7540C G14241T C14408T G16647T C18555T T20295C G22992A G23401A A23403G GGG28881AAC C29546T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564240
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T T1432C C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564241
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G T26552C G28851T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564242
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G10787K C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564243
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G13571K C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564256
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22343S G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564257
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC C29585T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564259
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564407
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC C29585T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564408
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C16178Y G16647T C17285T C18555T C22480T G22992A G23401A A23403G C25777T A28722T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564585
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23575Y C23707T T27785C GGG28881AAC C29585T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564586
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564587
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3354K T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC C29585T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564604
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC C29585T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564605
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A10657R A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564611
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564612
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564653
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564654
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564718
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC C29585T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_564742
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC7916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T A1163T T1432C C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565124
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC8633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565217
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC8824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C17104Y C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565510
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC9343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14016T C14408T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565519
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC9356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565644
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC9667/2020
 ATTAAAGGTTTATACCTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A T23308Y G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565746
 2020-08-03 2020-09-30
 Australia hCoV-19/Australia/VIC9861/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MT953878
 2020-08-03 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-66682640/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T445C C3037T C6286T C14408T T16926C G21255C C22227T A23403G C26801G C27944T C28932T G29645T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

MW023466
 2020-08-03 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1273/2020
 ATTA1- C241T C379A A385C C1059T T2153C C2268T C3037T G4657A G7393T C8950T G11851A C14408T G21578T A23403G G25563T C25703T T26331C C27297T G28842T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_512921
 2020-08-04 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH466/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T

EPI_ISL_512922
 2020-08-04 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH467/2020
 T3906C G22468T T28144C G28878A G29742A

EPI_ISL_512923
 2020-08-04 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH468/2020
 T3906C C8782T G22468T T28144C G28878A G29742A

EPI_ISL_512927
 2020-08-04 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH473/2020
 C241T C3037T C14408T C18877T A23403G G25563T C26735T C27944T

EPI_ISL_512988
 2020-08-04 2020-08-12
 Saudi Arabia hCoV-19/SaudiArabia/KAUST-JEDDAH632/2020
 C241T C3037T C14408T G23666C GGG28881AAC

EPI_ISL_514347
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/England/203290064/2020
 ATT1- T11Y C36Y C241T C274T C2062T A2810G C3037T C6395T A10317G A12410G C14408T C16323T A18366G C18788T T19839C T21093C A23403G G23678K C25703T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_514452
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/England/NOTT-112EB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3102G C14408T C15180T T16251C T19839C A22893G A23403G G28509A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514516
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514533
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514540
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514541
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22326T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29469T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514542
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514543
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T T2428C C3037T T3256C C5622T C12970T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514544
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514545
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514546
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514547
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514548
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514553
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514554
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514555
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514557
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514558
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C26889T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514560
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514562
 2020-08-04 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C26889T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515187
 2020-08-04 2020-08-18
 Latvia hCoV-19/Latvia/100/2020
 C241T A1202G C3037T C8318T C12513T C13730T C14408T C18877T A23403G G23522A G25563T C25710T G28881A

EPI_ISL_515188
 2020-08-04 2020-08-18
 Latvia hCoV-19/Latvia/101/2020
 C241T A1202G C3037T C8318T C12513T C13274T C13730T C14408T C18877T A23403G G23522A G25563T C25710T G28881A

EPI_ISL_516446 MT928974
 2020-08-04 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C21304T A23403G G25563T G25907T C27689T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516451 MT928979
 2020-08-04 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8106T C12025T C12357T G14316T C14408T T19839C C21928T A23403G C23707T T24631C C26110T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516452 MT928980
 2020-08-04 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7312T C12025T C12357T G14316T C14408T T19839C C21928T A23403G C23707T T24631C C26110T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516454 MT928982
 2020-08-04 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C14408T C14599T G15732T C17634T T19143C A20268G A23403G G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516461 MT928989
 2020-08-04 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871A T12096C C14408T T15354C C18877T A23403G A23845T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516463 MT928991
 2020-08-04 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T C7728T A8081G C11956T C12025T C14408T T19839C A23403G C23707T C23758T T23839C C26894T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516477 MT929004
 2020-08-04 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T C21431T A23403G G24199T C26228T G28083C C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516570 LR882334
 2020-08-04 2020-08-21
 Switzerland 230029
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T2926Y C3037T G3052R G3074S C3101M G3761R G5425K A5563R C6903Y T7767C C8047T T10006Y A10042W G10065R G12988T C14408T G15598A C17104T G18028T A20268G A20465R A22653W C22879A A23403G T24910C T26972C C27800A C27855M G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516572 LR882326
 2020-08-04 2020-08-21
 Switzerland 230031
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1438G C3037T C3738T T6908Y G9130T C14408T C16111T A23403G T27319C G28346T G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867W

EPI_ISL_516575 LR882341
 2020-08-04 2020-08-21
 Switzerland 230034
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G943R G1008T C2570T C3037T C6578T G10631A C12119Y C12559T C14408T C15324T G17722K C21005T A23403G C27765T C28893T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516576 LR882339
 2020-08-04 2020-08-21
 Switzerland 230036
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1438G G3013S C3037T A3069R G3091R A3097W C3130M CT3141MK T3144K C3738T G9130T C14408T C16111T A22904W T22951Y A23403G T27319C G28346T G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516577 LR882338
 2020-08-04 2020-08-21
 Switzerland 230037
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1387Y G2951R T3005W C3037T A3123R C4752T A5325W C5348Y T5559W A5563R T10076W G11842A A12759G A13449G C14408T G18292T G18782T A20268G G23066R A23403G C24621T G27967K C28740S C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516578 LR882342
 2020-08-04 2020-08-21
 Switzerland 230038
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C815T C3037T C6286T GAG6877KMK C6883M C6990Y T7035W C14408T G21255C C22227T A23403G C26801G C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516585
 2020-08-04 2020-08-21
 Switzerland hCoV-19/Switzerland/230046_749_E11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T C5467Y G9130T G13183K C14408T C15941T C16111T C17373T A23403G T27319C G28346T G28378T G28487A C28868T GGG28881AAC C29541Y G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516586 LR882354
 2020-08-04 2020-08-21
 Switzerland 230047
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C683T C1938T C3037T T3144K C7008Y C7303T C8964Y G11083T C11606Y C13957Y C14408T C16762Y G17122T G17572T A22005M A23403G G25314T G28576T GGG28881AAC C29296T G29744A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516589 LR882355
 2020-08-04 2020-08-21
 Switzerland 230051
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G483S A642M T2537G A2905W T2926K C3037T A3542W G3549S T3730Y G5329R T5471K A5498R C6573T T7396C T10076W G12191T C14120T C14408T T16479C A22948M T23000Y T23008Y G23066R C23099Y A23403G G25471T G26199K GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516591 LR882361
 2020-08-04 2020-08-21
 Switzerland 230053
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T G2921K C3037T T3095C T3142Y G10265A C12115Y C12880T C14408T A15972G C19718T A23403G G27430R G28077T T28759Y GGG28881AAC G29692K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517561
 2020-08-04 2020-08-24
 United Kingdom hCoV-19/England/SHEF-C9D66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517588
 2020-08-04 2020-08-24
 United Kingdom hCoV-19/Scotland/EDB7128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517592
 2020-08-04 2020-08-24
 United Kingdom hCoV-19/Wales/PHWC-169B21/2020
 ATTAAAGGTTTATACCT1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC G29747K

EPI_ISL_523280
 2020-08-04 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T A6625G C9246T G11083T C11109T C12415T C14408T C17750T G17790T T19159G C20178T A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523542
 2020-08-04 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G C25466A G25563T C26735T T26876C C28311T C28854T A28900C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_524492
 2020-08-04 2020-08-28
 United Kingdom hCoV-19/England/BRIS-133838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C3037T A3625T C8782T C10755T C11195T C14408T A23403G G23405A G24077T G26268T GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527382
 2020-08-04 2020-09-03
 United States hCoV-19/USA/PR-B2DR/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T T4441C C6198T C7815T C14408T C17676T A20262G C23191T A23403G C24771T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_527383
 2020-08-04 2020-09-03
 United States hCoV-19/USA/PR-B2FH/2020
 ATTAAAGGTTTATACCTTCCCAGG1- T25G C241T C815T C3037T C3411T C5339T T10795C C14408T C16329T C18452T A23403G G25437T C28657T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_527384
 2020-08-04 2020-09-03
 United States hCoV-19/USA/PR-B2K5/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T T4441C C6198T C7815T C14408T C17676T A20262G C23191T A23403G C24771T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_527624 MT958256
 2020-08-04 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1559/2020
 AT1- C241T C3037T C14408T C18877T A23403G C23707T G25563T C28890T T29710A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527625 MT958257
 2020-08-04 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T C18115T C18486T A20268G C21575T T22162C A23403G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527626 MT958258
 2020-08-04 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18115T C18486T A20268G C21575T T22162C A23403G C28854T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_527627 MT958259
 2020-08-04 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1562/2020
 ATTAAAGGTTTATACC1- G204A C241T C2445T C3037T C4331T C4824T C5173T C6633T C11109T C11960A C14408T C14790T T16374C G17523T A22958C A23403G A23779T G24794A G25767T G28122T GGG28881AAC C29451T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527628 MT958260
 2020-08-04 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1563/2020
 ATTAAAG1- C241T C3037T C14408T C18486T A20268G C21575T T22162C A23403G A28305T C28854T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_527629 MT958261
 2020-08-04 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T C18486T A20268G C21575T T22162C A23403G A28305T C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_527810
 2020-08-04 2020-09-05
 Ecuador hCoV-19/Ecuador/USFQ-194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C29870A

EPI_ISL_527811
 2020-08-04 2020-09-05
 Ecuador hCoV-19/Ecuador/USFQ-195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC C29870A

EPI_ISL_528651
 2020-08-04 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1232/2020
 A1- C241T C1710T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T G28939T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_528753
 2020-08-04 2020-09-09
 Indonesia hCoV-19/Indonesia/JB-TFRIC19-R53817/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T T1623C C3037T A5725T A8446G C14120T C14408T C15141T C18877T G19539T A23403G G25563T C26735T AAAAAAAAAAAAA29891-

EPI_ISL_529533
 2020-08-04 2020-09-10
 United Kingdom hCoV-19/England/ALDP-97F5B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T403C C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529535
 2020-08-04 2020-09-10
 United Kingdom hCoV-19/England/ALDP-97FC4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T G2183A C3037T C5849T A9433T T9668C G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530932
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531879
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FD7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C13887T C14408T C21639T G21724T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531883
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531894
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96023C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7113T C8917T G9389A C11074T C14408T G22708A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531910
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FDF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C11379T C14408T A23403G G25314T GGG28881AAC C29272T C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531935
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960D95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531937
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960A34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G11083T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531938
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G11083T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531947
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-960DE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531956
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9609FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T T14100C C14408T A20268G C21614T A23403G C28846T C28854T C28948T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531962
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960B40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531963
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96131A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925R G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531964
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96013F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C A5667T A6597G C9924T C12651T C14408T G14923A G21624T C22006T A23403G C23533Y G25699A C26270T G28628T GGG28881AAC A29403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531969
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960A07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C811T C1912T C3037T A3859G C8752T C11074T G11083T C14408T C18877T G21193T G21220T C22227T A23403G G25563T G25660T G28857T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531971
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960EDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531972
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960ACB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12883C C14408T C16293T A23403G G25471S GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531976
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A G11851K C13620Y C13887T C14408T C21639T G21724T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531984
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960E83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1678C C3037T G3053R C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC C29197T G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531985
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-960E65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532006
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T G19525K A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532017
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-960E56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532019
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-960DD1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532022
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9602F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C13887T C14408T C21639T G21724T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532023
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960E74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T C7521T G11851T C14408T C14786T T20202C A23403G G24812T C26895T G27514A GGG28881AAC C29197T G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532028
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-960DA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532034
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9605F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T C3037T C14408T A23403G GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532035
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96108C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532037
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960AF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532039
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-960E47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C11669Y C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532040
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19872C A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532057
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-961347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532059
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96074C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C3037T G4105T C4391A C11124T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532066
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960B5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1960T C3037T T8761A G10097A G13993T C14408T G17122T G18960T A23403G G24757T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532067
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960BB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24023T GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532069
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960F08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532074
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3065A C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532077
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96130B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T C15026T T20661C G21255C C22227T A23403G C26801G T28067W C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532082
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-961101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T C7973T T10453C C11195T C14408T A23403G T25139C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532087
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-960F26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T C16887T T19839C C21646T A23403G A24205T C25613T C26208T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532096
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9610E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532097
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96032A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4926C T8296C C14408T A18184G G21624T G22344T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532101
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9606A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7401T G11230T C14408T A23403G T24088C G25617T G27390C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532103
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960E1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532107
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960EED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C11074T G11083T C14408T A23403G G27467T G27497T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532110
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9612E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T C23202T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532113
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-961338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11521T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532116
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96090A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G7065S T10453C C11195T C14408T A20711T A23403G A25003G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532118
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9611F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C9803T C14408T A15477T C16915T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532119
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C13887T C14408T C21639T G21724T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532120
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960E38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G G25687T G26257T C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532126
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G793A C1191T C3037T G3251A C14408T C19156T C21575T C21637T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532127
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960E29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28087Y C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532128
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-960DB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T C8950T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25145S G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532132
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96066D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G11083T T14100C C14408T A20268G C21614T A23403G CA28846TG C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532133
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960ABC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12883C C14408T C16293T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532134
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9608A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C3037T C4002T T7633C G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T T27419A C27513T GGG28881AAC T28889C C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532135
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960F17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532417
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95EFFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C7195T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532483
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FACF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532527
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FB80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C17822T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532535
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95EE5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C24700A G25052A G25660T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532650
 2020-08-04 2020-09-11
 United Kingdom hCoV-19/England/QEUH-8835E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534328
 2020-08-04 2020-09-13
 Spain hCoV-19/Spain/MD-H12-45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G C25418A C26873T C28854T ATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29806-

EPI_ISL_535505
 2020-08-04 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C601T C850T C3037T C3811T C14396T C14408T G22344T A23403G G25126A GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_535508
 2020-08-04 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002638/2020
 ATTAAAGGTTTA1- C241T C3037T C6762T T12503C C14408T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535510
 2020-08-04 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C6762T T12503C C14408T C15656T A23403G G25770T T27384C GGG28881AAC C29721T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_535518
 2020-08-04 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C6762T C14408T A23403G G25770T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_537085
 2020-08-04 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96166C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGGG28881AACA G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539785
 2020-08-04 2020-09-20
 Ecuador hCoV-19/Ecuador/USFQ-212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_539933
 2020-08-04 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9983FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7299T C10448T G11083T C14408T A20268G C21614T A23403G C28603T G28703T C28854T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540507
 2020-08-04 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T A28133T C28531T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540510
 2020-08-04 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C10029T C10449T T12066C C14408T C18647T T19839C C21595T C21646T A23403G T25711C C26846T T28009C G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540511
 2020-08-04 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G T27922C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540512
 2020-08-04 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G T27922C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540514
 2020-08-04 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1812T C3037T C14408T A20742C A23403G T27922C A28249G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540515
 2020-08-04 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G T27922C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540517
 2020-08-04 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540535
 2020-08-04 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T G29239T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541199
 2020-08-04 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1226/2020
 ATTAAA1- C241T C3037T T11675C C14408T T22843C A23403G C25452T C26010T GGG28881AAC TAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29823-

EPI_ISL_541200
 2020-08-04 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1268/2020
 AT1- C241T C3037T T11675C C14408T G22801T T22843C A23403G C25452T C26010T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_541916
 2020-08-04 2020-09-23
 Spain hCoV-19/Spain/MD-IBV-99007144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T445C T1114A C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_547658
 2020-08-04 2020-09-24
 United States hCoV-19/USA/WI-GMF-13783/2020
 ATTA1- A14G C241T T1592C C2416T C3037T C6113T C14408T T16530A G21372T A23403G G25563T C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547660
 2020-08-04 2020-09-24
 United States hCoV-19/USA/WI-GMF-13831/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G G25947T C28977T G29744T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547661
 2020-08-04 2020-09-24
 United States hCoV-19/USA/MN-GMF-13847/2020
 ATTA1- C241T G2035T C3037T T3532C T9022C C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547662
 2020-08-04 2020-09-24
 United States hCoV-19/USA/IA-GMF-13859/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T A696C C3037T G3871T T3931C C6285T C14408T G14874K C19524T G19962A C20429T AA21550MW A23403G GC27882SY C28977T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_548580
 2020-08-04 2020-09-26
 United States hCoV-19/USA/CA-CZB-4063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A964G C1059T C2433T C3037T C3602T G11083T C14408T C16762T C19572T G22112A A23403G A24894C G25563T G27583T G29024T C29095T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_549053
 2020-08-04 2020-09-28
 Norway hCoV-19/Norway/3011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C2973T C3037T C6573T A6659G G12191T C13261T C14408T T16479C A23403G G28109T GGG28881AAC CTCCTG28890- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549056
 2020-08-04 2020-09-28
 Norway hCoV-19/Norway/3009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9142T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G20932A G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549062
 2020-08-04 2020-09-28
 Norway hCoV-19/Norway/2997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT C10519T G11132T C14408T G21255C C22227T A23403G G26104T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549072
 2020-08-04 2020-09-28
 Norway hCoV-19/Norway/3013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C24378T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549074
 2020-08-04 2020-09-28
 Norway hCoV-19/Norway/3015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT C10519T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549075
 2020-08-04 2020-09-28
 Norway hCoV-19/Norway/3017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T G21830T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549087
 2020-08-04 2020-09-28
 Norway hCoV-19/Norway/3079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549119
 2020-08-04 2020-09-28
 Norway hCoV-19/Norway/3012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T G27514A GGG28881AAC C29197T G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549126
 2020-08-04 2020-09-28
 Norway hCoV-19/Norway/3102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549127
 2020-08-04 2020-09-28
 Norway hCoV-19/Norway/3103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549128
 2020-08-04 2020-09-28
 Norway hCoV-19/Norway/3104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5572A A6366T T9440G G11410A C14408T C19488T A23403G G25776T G28048T GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549129
 2020-08-04 2020-09-28
 Norway hCoV-19/Norway/3105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5572A A6366T T9440G G11410A C14408T C19488T A23403G G25776T G28048T GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549130
 2020-08-04 2020-09-28
 Norway hCoV-19/Norway/3106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560612
 2020-08-04 2020-09-29
 France hCoV-19/France/BR8944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C5239T G8371T C9430T C14408T A15477T C18395T A19667C AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561237
 2020-08-04 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-1711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T C16575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561289
 2020-08-04 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G A25974G C26151T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562611
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC11167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C8650Y G11083T C14408T G16647T A17337G C18555T C22858T G22992A G23401A A23403G -25700CCC GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_562965
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC10575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T G3085T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562969
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC10581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T T1432C C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_562975
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC10593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_562986
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC10608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C11471Y C13140Y C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G C23910T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562988
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC10610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G G28817T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562989
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC10611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_562992
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC10615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T3217C T5551C T7540C C14408T G15594T G16647T C18555T G18973T C21005T G22992A G23401A A23403G C27920T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_562994
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC10618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C26028T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562996
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC10621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T A22405R G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562997
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC10622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G G28817T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563134
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC10871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563149
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC10906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563261
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC11130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C2836T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563278
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC11163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21575T G22992A G23401A A23403G GGG28881AAC C28961T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563739
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC13535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6401Y T7540C T11573K C14408T G15594T G16647T C18555T G18973T C21005T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563742
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC13540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2044T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563755
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC13563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563767
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC13585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563781
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC13606/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563782
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC13607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C9803Y C14408T G16647T C18555T A21551R G22992A G23401A A23403G C24588Y G25444K GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564249
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC7132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T T7540C C9051T C14408T G16647T C18555T G18985K GC22992AY G23401A A23403G C26464A GGG28881AAC T29728C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564250
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC7135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G1018K A1163T C3037T G3564K C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G24933K C26464A GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564251
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC7136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C5144T C6317Y T7540C C9051Y C14408T G16647T C18555T G22992A G23401A A23403G C26464A GGG28881AAC T29728C TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564254
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC7147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G558K G660K A1163T G2036K C3037T G3564K G4505K G5375K C6033T G7038K T7540C G9141K G9249K G10986K G11535K G12164K G13571K G14277K C14408T G16647T G17096K C18555T C18568T C18747T G22899K G22992A G23401A A23403G C23457A G23505K G24557K G24933K C25499T G28079K GGG28881AAC G29779K G29781K TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564344
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC7327/2020
 ATT1- C241T A1163T C3037T T7540C T7730Y G14241T C14408T G16647T C17746Y C18555T G22992A G23401A A23403G GGG28881AAC C29546T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564552
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC7651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G558K G660K G663K A1163T G2036K G2604K G3004K C3037T C3505Y C3551Y G3564K G4505K C5339Y G5375K G5880K G6483K G7038K G7214K G7246K T7540C G8790K G9141K G9249K G10986K G11392K G11535K G12164K G13571K A14084G G14277K C14408T G14548R G15199K G15202K G16647T G16787K G17096K GG17848KK C18555T G19086K G19252K G22018K G22899K G22992A G23401A A23403G C23707T C23766Y G24557K G24933K T27785C G28077K G28079K G28559K GGG28881AAC G29779K G29781K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564597
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC7712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564598
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC7713/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564599
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC7716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G C26885Y GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564601
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC7718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T A1163T C2094Y C3037T T7540C G11083K A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564607
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC7724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5346T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC C29585T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564609
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC7726/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3860T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G G24992C A26162G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564610
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC7727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C4206Y T7540C A14084G T14257Y C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC C28887Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564622
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC7744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC C29774T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564671
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC7808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G6557A T7540C T8005C C14408T T16461C G16647T C18555T G22992A G23401A A23403G A27140G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564869
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC8132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A4269G T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565078
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC8530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C40Y C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565079
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC8531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3096T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_565512
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC9345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28313T C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565516
 2020-08-04 2020-09-30
 Australia hCoV-19/Australia/VIC9351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T A17725C C18555T G22992A G23401A A23403G A26162G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_569041
 2020-08-04 2020-10-02
 France hCoV-19/France/IHU-1054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T A14113G C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MW023460
 2020-08-04 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1226/2020
 ATTAAA1- C241T C3037T T11675C C14408T T22843C A23403G C25452T C26010T GGG28881AAC TAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29823-

MW023461
 2020-08-04 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1268/2020
 AT1- C241T C3037T T11675C C14408T G22801T T22843C A23403G C25452T C26010T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_509756 MT846460
 2020-08-05 2020-08-05
 United States SARS-CoV-2/human/USA/FL-BPHL-0698/2020
 A1- C241T C3037T C14408T C14786T A23403G GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_513911
 2020-08-05 2020-08-14
 Australia hCoV-19/Australia/SAP481/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C A8651C C14408T G15594T G16647T C18555T G18973T C21005T G22992A G23401A A23403G GGG28881AAC AAA29901-

EPI_ISL_514351
 2020-08-05 2020-08-17
 United Kingdom hCoV-19/England/203290068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C36T C241T C274T C2062T A2810G C3037T C6395T A10317G A12410G C14408T C16323T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC AAAAAAAAAAAAA29891-

EPI_ISL_514515
 2020-08-05 2020-08-17
 United Kingdom hCoV-19/Scotland/CVR3963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514539
 2020-08-05 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514549
 2020-08-05 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514550
 2020-08-05 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514551
 2020-08-05 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514552
 2020-08-05 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514559
 2020-08-05 2020-08-17
 United Kingdom hCoV-19/Scotland/EDB7153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_515189
 2020-08-05 2020-08-18
 Latvia hCoV-19/Latvia/102/2020
 C241T A1202G C3037T C8318T C12513T C13730T C14408T C18877T A23403G G23522A G25563T C25710T G28881A

EPI_ISL_515190
 2020-08-05 2020-08-18
 Latvia hCoV-19/Latvia/103/2020
 C241T A1202G C3037T C8318T C12513T C13730T C14408T G18170T C18877T A23403G G23522A G25563T C25710T G28881A

EPI_ISL_515191
 2020-08-05 2020-08-18
 Latvia hCoV-19/Latvia/104/2020
 C241T A1202G C3037T C8318T C12513T C13730T C14408T C18877T A23403G G23522A G25563T C25710T G28881A

EPI_ISL_515192
 2020-08-05 2020-08-18
 Latvia hCoV-19/Latvia/105/2020
 C241T A1202G C3037T C8318T C12513T C13730T C14408T C18877T A23403G G23522A G25563T C25710T G28881A

EPI_ISL_515193
 2020-08-05 2020-08-18
 Latvia hCoV-19/Latvia/106/2020
 C241T A1202G C3037T C8318T C12513T C13730T C14408T C18877T A23403G G23522A G25563T C25710T G28881A

EPI_ISL_515194
 2020-08-05 2020-08-18
 Latvia hCoV-19/Latvia/107/2020
 C241T A1202G C3037T C8318T C12513T C13730T C14408T C18877T A23403G G23522A G25563T C25710T G26416T G28881A

EPI_ISL_515195
 2020-08-05 2020-08-18
 Latvia hCoV-19/Latvia/108/2020
 C241T A1202G C3037T C8318T C12513T C13730T C14408T C18877T A23403G G23522A G25563T C25710T G28881A

EPI_ISL_516453 MT928981
 2020-08-05 2020-08-21
 United States SARS-CoV-2/human/USA/WI-UW-1027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2549A C3037T C9448T C10815T C14408T C14599T G15732T T19143C C19806T A20268G A23403G C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516595 LR882356
 2020-08-05 2020-08-21
 Switzerland 230059
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1438G C3037T A3063M C3738T G9130T C14408T C16111T A20440R A23013R C23039M G23067K G23120R A23122W A23403G G25340K T27319C G28346T G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516596 LR882371
 2020-08-05 2020-08-21
 Switzerland 230060
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1438G C3037T C3738T G9130T C14408T C16111T A23403G T27319C G28346T G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516597 LR882372
 2020-08-05 2020-08-21
 Switzerland 230061
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T C3037T C4084T C4810T C5144Y C14408T C19151T C20077M G20134T C20233T C22210T A23403G C25046T C27131T G28056A GGG28881AAC G29449T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516598 LR882362
 2020-08-05 2020-08-21
 Switzerland 230062
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28261T C28854T G29044A G29300K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516599 LR882373
 2020-08-05 2020-08-21
 Switzerland 230064
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T7035W C14408T T18471C C18526T A23403G C25498T G26155R C28139T C28833T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516600 LR882369
 2020-08-05 2020-08-21
 Switzerland 230065
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G943R G1008T C2570T C3037T C6578T G10631A C12559T C14408T C15324T C21005T A23403G C27765T C28893T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_516604 LR882364
 2020-08-05 2020-08-21
 Switzerland 230069
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C197T C241T C3037T G10265A C14408T C15720T A15972G G16033T C19718T A23122M A23403G C26681T G26700T T28759Y GGG28881AAC G29348T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_522881 MT929124
 2020-08-05 2020-08-26
 United States SARS-CoV-2/human/USA/IL-UW-1147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A10323G C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524491
 2020-08-05 2020-08-28
 United Kingdom hCoV-19/England/BRIS-1338CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A4420R C6543T A11228G T12730W C13207Y A13898M C14408T C14877T G15181S G15822T A19403W T21861Y T21995C A23403G G23873K G25563T A26489M G27121R G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525397
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/71IRL98729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525399
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/72IRL00274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525400
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/72IRL00276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525403
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/72IRL00288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525404
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/72IRL00289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525405
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/72IRL00290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525406
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/72IRL00293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525407
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/72IRL00302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525408
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/72IRL00303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525409
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/72IRL00304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525410
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/72IRL00307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525411
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/72IRL00318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525412
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/72IRL00319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525414
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/72IRL00327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525415
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/72IRL00330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_525416
 2020-08-05 2020-08-29
 Ireland hCoV-19/Ireland/72IRL00335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526337
 2020-08-05 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97F7C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526338
 2020-08-05 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97F80B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7182T C14408T A23403G G25617T G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526339
 2020-08-05 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97FA32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11923G C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526340
 2020-08-05 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97FB5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C2110T C3037T C14408T A23403G A28043T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526346
 2020-08-05 2020-09-01
 United Kingdom hCoV-19/England/ALDP-9802AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T G28817T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526588 MT956712
 2020-08-05 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C7420A C10319T C10755T C12068T C12073T C14408T C16289T G20679T G22346T A23403G G25563T G27670T C27964T AAAA29900-

EPI_ISL_526589 MT956713
 2020-08-05 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1103/2020
 ATTA1- C241T C1059T C2110T C3037T C6582T C14408T C16260T C20429T A23403G G25563T T28029C A28401G C28821A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526590 MT956714
 2020-08-05 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1104/2020
 ATTA1- C241T C1059T C2113T C3037T C9264T G11083T C11095T C14408T C14790T A23403G G25563T C29200T C29754T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526591 MT956715
 2020-08-05 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T14382C C14408T T22843C A23403G C25452T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_526593 MT956717
 2020-08-05 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1107/2020
 ATT1- C106T C241T C1059T C1625T C3037T C10319T C14408T G16710T G20176T C21214T A23403G T24376C A25121T G25563T C27964T C29077T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_526594 MT956718
 2020-08-05 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1108/2020
 ATTA1- C241T G944A C1059T C3037T G8083A C10319T A12472G C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_527385
 2020-08-05 2020-09-03
 United States hCoV-19/USA/PR-B35A/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T G6052A C7600T C10319T C14408T G19872T C21621T G22201T A23403G G25563T G25855T C27964T G28975T G29254T G29474T G29764T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527386
 2020-08-05 2020-09-03
 United States hCoV-19/USA/PR-B35C/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C815T C958T C3037T C3411T C10228A T10795C C14408T C18452T C21207T A23403G G25437T GGG28881AAC A29887G AA29898GG A29903T

EPI_ISL_528652
 2020-08-05 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1108T C1710T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T G29868A C29870A

EPI_ISL_528653
 2020-08-05 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1234/2020
 ATT1- C241T GTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTT425- C1710T C2416T C3037T C5622T C14408T C16616T A23403G G25563T C26885T C27603T C28887T G29868A C29870A

EPI_ISL_528654
 2020-08-05 2020-09-08
 United States hCoV-19/USA/VA-DCLS-1235/2020
 ATTA1- C241T C1710T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T

EPI_ISL_529235
 2020-08-05 2020-09-10
 United Kingdom hCoV-19/England/BIRM-635DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2299T C3037T G3955T TCAAATTCG6329- C6539T C14408T A23403G G23426T C23655T T25663C C26936T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529534
 2020-08-05 2020-09-10
 United Kingdom hCoV-19/England/ALDP-97FB3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529574
 2020-08-05 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9863D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T403C C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529575
 2020-08-05 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9863F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5259T C5301T C5907T C13247T C14408T C14937T T18144C A23403G C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529576
 2020-08-05 2020-09-10
 United Kingdom hCoV-19/England/ALDP-986731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529874
 2020-08-05 2020-09-10
 United States hCoV-19/USA/MI-MDHHS-SC21756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T T1936C C3037T G3433A C13487T C14408T C16260T C21707T A23403G C23557T G25563T G26690T C27679T C28821A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_530131 MT997215
 2020-08-05 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T T1927C C3037T C10319T C13824T C14408T A18424G A20212C C20703T C21304T T21886C A22255T A23403G G25563T G25907T C27964T C28472T C28869T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_531865
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95FE0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C952T A1163T C3037T T3256C C5497Y C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531869
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FF1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T C21660T A23403G C24700A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531875
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FD3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G11083T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531888
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FC7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T G25726T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531898
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FD6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G3230T C7086T C14408T C18252T A23403G G28396A C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531908
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FBDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T G25726T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531921
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95FD20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3786G C5055T G11851T C14408T C14786T G19348T A23403G G24812T C26895T G28817T GGG28881AAC G29553T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531933
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-961189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531943
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960F80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531945
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9610B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T G21641K C22388T A23403G C26060T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531953
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96071F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531954
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9610C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531958
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9607E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531965
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9603FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C874T C3037T C8645Y C10369Y G13061A C14408T A23403G G23868T C26895G GG28027TT GGG28881AAC C29215T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531966
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960FCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T C20178T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531968
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531970
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960FDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531973
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96121D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925R G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531975
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C3365T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531978
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960F35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C3796T C5100T C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531982
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9606E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T G20919T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531983
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96105F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4321T C5055T G11851T C14408T C14786T C15371T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531986
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9609A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C19586T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531988
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9602A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G3230T C7086T C14408T C18252T A23403G G28396A C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531990
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531994
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T C25511Y C27350Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532004
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960F44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C7231T C14408T C21575T C21637T A23403G C23525T A28169G G28655T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532005
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532008
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532015
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532018
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96109B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532024
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-961004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3264T T5507A C14408T G15438T C18788T G19648T A20268G C20719T T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532027
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532031
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-960876/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C3037T C4543T G5629T C8950T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532032
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G CACACCTTTTGCTCGTTGCTG25667- C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532036
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96113E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G G26257R A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532038
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96114D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C999T C1912T C3037T G4180T C4683T C6336Y T10453C C11195T G13348T C14408T G14866A C21811T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532049
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532060
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9607D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532062
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9606F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532068
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9602B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T G24755T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532076
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96122C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532078
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960CF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532080
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-961198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C5100T C7051T C7303T C8964T C10252T G11083T C14408T G19656T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532081
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9611B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C26889T GGG28881AAC G29227T G29300C C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532083
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96068B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T G25726T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532084
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14177Y C14408T G16622R A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532091
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4174Y C13170T C14408T C18877T C20199T A23403G G25563T C26139T C26735T T27634C G28857T G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532098
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9610D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T C15026T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532099
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9606B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C7609T C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532102
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9611D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532104
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C11074T G11083T C14408T A23403G G27467T G27497T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532114
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532115
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9607A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G A24409G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532125
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96116B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28657T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532130
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9604AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G6349K G14202T C14408T G19542T C19718T C22388T A23403G C26060T C27476T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532131
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96117A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G T28062C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532137
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9605D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G20302A G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532138
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96120E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925R G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532284
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A23403G C25889T C26013T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532299
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F1E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C6633Y G8371T C9430T C14408T A15477T AGA20622TTT A23403G C23730T G25563T T26497Y C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532325
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F7F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T C6445T G6943T C10868T C14408T G15652T A23403G G23438T C25416T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532374
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9178C C14408T C22712T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532378
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-95F69E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532400
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F76E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8026G C14408T C17135Y A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532403
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G626T C3037T A9433T G10265A C12116T C14408T G15380T G18984T A19650G A23403G G23621T G27841T C28603Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532410
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F2A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C24700A G25052A G25660T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532426
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F8E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532428
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532429
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A G3663A C9733T C14408T T20273C C20759T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532442
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F8D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24023T GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532449
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FC41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2992C C3037T G11447A C14408T C21648T A23403G G25302A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532455
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FB35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532458
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F26D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219C C241T C1347T C3037T C14408T G18412T C20736A C21637T A23403G G25644T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532472
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F6AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532478
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95ED7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G626T C3037T A9433T G10265A C12116T C14408T G15380T G18984T A19650G A23403G G23621T G27841T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532485
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FB44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T18831C A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532509
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532513
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C24700A G25052A G25660T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532522
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95EEB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A23403G C25889T C26013T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532526
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95EE4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T T14100C C14408T A20268G C21614T A23403G C28846T C28854T C28948T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532530
 2020-08-05 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C24700A G25052A G25660T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534204
 2020-08-05 2020-09-11
 Latvia hCoV-19/Latvia/115/2020/P1
 C241T C3037T C6666T C14408T C16289T G19669A A23403G G25429T C26681T C29167T A29385G C29421T

EPI_ISL_534206
 2020-08-05 2020-09-11
 Latvia hCoV-19/Latvia/117/2020/P1
 C241T C3037T T3169C G3692T C6267T T9961C G10265A G10396T G12052T C14408T A15972G C16178T C18252T G19648T C19718T C20178T A23403G A25492G G25599T C28383T T28759C GGG28881AAC

EPI_ISL_534250
 2020-08-05 2020-09-11
 Sweden hCoV-19/Sweden/20-52537/2020/P1
 C241T C3037T C10702T C14408T C14786T T16456C C21682T A22996G A23403G C23634T C26447T T27986A GGG28881AAC C28887T

EPI_ISL_535397
 2020-08-05 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002498/2020
 A1- C241T C2676T C3037T T12503C C14408T A23403G G28809T GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_535399
 2020-08-05 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002502/2020
 ATT1- C241T G529T G2177A C3037T C6781T T12503C C14408T A23403G G25770T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536572 MW035370
 2020-08-05 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T A2375C G2782T C3037T A11983G C14408T C16887T A23403G T23878C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536573 MW035371
 2020-08-05 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536581 MW035379
 2020-08-05 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12025T C12357T G14316T C14408T T19839C C21928T A23403G C23707T T24631C C26110T GGG28881AAC C29274T C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536582 MW035380
 2020-08-05 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1550A C3037T A5718T C14408T C15240T A19899T C20956A A21464G A23403G A23899T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536584 MW035382
 2020-08-05 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5055T C5672T A7837C C14408T T14700C G16647C A17609C A23403G C25854T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536966
 2020-08-05 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961E19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2458T C3037T C4002T G8353A C8950T C9985T G10097A C10458T G11083T C13536T C14408T C21614T C22571T A23403G C23731T T25735C T27740C GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536996
 2020-08-05 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DD8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537083
 2020-08-05 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961CF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21637T A23403G G26724T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537099
 2020-08-05 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961C1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C13887T C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537121
 2020-08-05 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9618A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539786
 2020-08-05 2020-09-20
 Ecuador hCoV-19/Ecuador/USFQ-213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_539787
 2020-08-05 2020-09-20
 Ecuador hCoV-19/Ecuador/USFQ-214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T T3793C C14408T A23403G A26530G

EPI_ISL_539788
 2020-08-05 2020-09-20
 Ecuador hCoV-19/Ecuador/USFQ-216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2987C C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_546935
 2020-08-05 2020-09-24
 Czech Republic hCoV-19/Czech Republic/NRL-8118-1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G529T G545T C3037T G5554T C14408T G19891T C21575T C22938A A23403G C24034T G25249T G26152T C27532T G28321T GGG28881AAC C29614T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_547664
 2020-08-05 2020-09-24
 United States hCoV-19/USA/WI-GMF-13999/2020
 ATTAAAGGTTTA1- C241T C1059T C1170T C3037T C6385T C11758T C14408T C16260T T23113C A23403G C23625T G25563T C27294T G27955A C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547665
 2020-08-05 2020-09-24
 United States hCoV-19/USA/IA-GMF-14006/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G219T C241T C1059T G2089A C3037T C14408T C15324T C16260T C21575T C21622T C22329Y A23403G G24173T G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548520
 2020-08-05 2020-09-26
 United States hCoV-19/USA/CA-CZB-3949/2020
 AT1- A12R C241T C2245T C3037T C14408T C15660T C18395T A20268G C20759T A23403G T24076C C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_548577
 2020-08-05 2020-09-26
 United States hCoV-19/USA/CA-CZB-3950/2020
 ATTAAAGGTTTATACCT1- C241T C3037T G4925T C9430T C14408T C14925T G18169A T18351C G19969A A20268G A23403G C24031T G27390C C28854T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_548581
 2020-08-05 2020-09-26
 United States hCoV-19/USA/CA-CZB-4072/2020
 AT1- C241T C379A C1059T C3037T C5869T G6865T G11893T C14408T G16707T G17261A G17280T A19326T G22225T A23403G C23604A A24922G C25117T G25563T C28775T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_548582
 2020-08-05 2020-09-26
 United States hCoV-19/USA/CA-CZB-4029/2020
 AT1- C222Y C241T C1059T G1957A C3037T A4197G A10236G C14408T C15720T C17550T C21952T A23403G G25563T C27741G C29466T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548585
 2020-08-05 2020-09-26
 United States hCoV-19/USA/CA-CZB-4076/2020
 C241T C1059T C1758T C3037T G4444A C5183T T6579C C12534T C14408T G21372T A22320G A23403G G25563T G28376A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_548594
 2020-08-05 2020-09-26
 United States hCoV-19/USA/CA-CZB-4066/2020
 ATTAA1- C241T C3037T C8878T G9479T C11620T C14408T T15385C C16386T C21575T C22388T A23403G GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_548654
 2020-08-05 2020-09-26
 United States hCoV-19/USA/CA-CZB-4067/2020
 ATTAAAGGTT1- C241T C275S C379A C1059T C3037T G4181A C5869T G11893T C12439Y C14408T G16707T G17261A G17280T G19669R G22225T A23403G C23604A A24922G C25117T G25563T C28775T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548665
 2020-08-05 2020-09-26
 United States hCoV-19/USA/CA-CZB-4071/2020
 A4W C241T T833C C1059T C3037T C8389T G9705T G11521A C14408T A21078G A23403G G25445T T25514Y G25563T C27964T G28028K G28899A G29260T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_548667
 2020-08-05 2020-09-26
 United States hCoV-19/USA/CA-CZB-4075/2020
 T9K T76W T78K C241T C379A C1059T C1568Y C3037T C5869T G11893T C14408T G16707T G17261A G17280T G22225T A23403G C23604A A24922G C25117T G25563T C28775T C29218Y CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548674
 2020-08-05 2020-09-26
 United States hCoV-19/USA/CA-CZB-4069/2020
 ATTAAAGG1- C241T C379A C1059T C3037T C5869T G11893T C14408T G16707T G17261A G17280T G22225T A23403G C23604A A24922G C25117T G25563T C28775T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548675
 2020-08-05 2020-09-26
 United States hCoV-19/USA/CA-CZB-4074/2020
 ATTA1- C241T C379A C1059T C3037T C5869T G11893T C14408T G16707T C16767Y G17261A G17280T G22225T A23403G C23604A A24922G C25117T G25563T C28775Y TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_548678
 2020-08-05 2020-09-26
 United States hCoV-19/USA/CA-CZB-4023/2020
 ATTA1- C241T C3037T C14408T C18568T A20268G C20759T A23403G T24076C C28854T G29405C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_549054
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C2973T C3037T AC5723GT C6573T A6659G G12191T C13261T C14408T T16479C A23403G G28109T GGG28881AAC CTCCTG28890- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549057
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C12120T C14230A C14408T G21800T G21830T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549058
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T G21830T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549060
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T G21830T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549076
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3397T C3634T A5116G A6659G T6663C T11444C C14408T C15324T C15587T T18003C T21291C G21724T A22459T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549077
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T G21830T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549078
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T G21830T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549079
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T G21830T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549080
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T G14050A C14230A C14408T G21800T G21830T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549112
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T G21830T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549120
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T G21830T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549131
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549133
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T G13617T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549134
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549135
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G G26199T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549136
 2020-08-05 2020-09-28
 Norway hCoV-19/Norway/3113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549193 MW040621
 2020-08-05 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1411/2020
 ATTA1- C241T C344T C1059T C3037T C5893T C10319T C10702T C14408T G16405T C16708T G16710T G20176T A23403G A25121T G25563T G26849T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549194 MW040622
 2020-08-05 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1412/2020
 ATT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C22264T A23403G G25019T G25563T G25907T C27964T C28472T C28869T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_562904
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC10406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563146
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC10903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563342
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC11352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_563343
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC11353/2020
 ATTAAAGG1- C241T A1163T C3037T T7540C C8389T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563740
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC13536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6730Y C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563746
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC13548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563762
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC13575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C17958Y C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563772
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC13594/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15216T G16647T C18555T G22992A G23401A A23403G G27758A TT27760AC GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564253
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC7145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564345
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC7328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G558K A1163T C3037T C3551Y G3564K G7038K T7540C G9249K G10986K G12164K C14408T G16647T C18555T G22899K G22992A G23401A A23403G G24933K G28079K GGG28881AAC ATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29850-

EPI_ISL_564409
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC7433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2106T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25521T C28253T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564547
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC7643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C482Y G558K G660K A1163T G2036K G2604K G3004K C3037T C3505Y G3564K G4505K G5375K G5378K G6483K G7017K G7038K G7214K T7540C G8790K G9141K G9249K G10986K G11392K G11535K G12164K G13571K A14084G G14277K C14408T G14548R G15199K G16647T G17096K G17848K C18555T G19252K G22899K G22992A G23401A A23403G C23707T G24557K G24933K T27785C G28079K GGG28881AAC G28904K G29779K G29781K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564553
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC7653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C482Y G558K G660K G663K A1163T G2036K G2604K G3004K C3037T G3259K C3551Y G3564K G4505K G5233R G5375K G5847K G5880K C6468Y G6483K G7038K G7214K G7246K T7540C G8696K G8790K G9141K G9249K G11392K G11535K G12164K G13571K A14084G G14277K C14408T G14548R G15769K G16647T G16787K G17096K GG17848KK G18297K G18318K C18555T G19086K G21123K G22018K G22899K G22992A G23401A A23403G C23707T C23766Y G24557K G24933K T27785C G28079K G28559K GGG28881AAC G29779K G29781K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564615
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC7734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C7948Y C8078Y A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564616
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC7736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T A2225R C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564617
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC7737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC T29709A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564663
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC7795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G9471A C14408T G16647T C18555T G18697A G22992A G23401A A23403G T27056C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564778
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC7969/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18377Y C18555T C22480Y G22992A G23401A A23403G T23695Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564872
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC8145/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G21255C G22992A G23401A A23403G C28725T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564876
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC8157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T G7328K T7540C C14408T G16647T C18555T T21369C G22992A G23401A A23403G T28009C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564936
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC8314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G G28817T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565515
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC9350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565645
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC9668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565682
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC9735/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C8752Y C14408T C16466T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565684
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC9738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T G7328T T7540C C14408T G16647T C18555T T21369C G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565685
 2020-08-05 2020-09-30
 Australia hCoV-19/Australia/VIC9739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G C25831T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_569047
 2020-08-05 2020-10-02
 France hCoV-19/France/IHU-1085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1912T C3037T G5210A C14408T C15324T C17470T C21191T A23148G A23403G T27125C C28854T AATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29770-

EPI_ISL_569049
 2020-08-05 2020-10-02
 France hCoV-19/France/IHU-1087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCA1- C241T C1912T C3037T G5210A C14408T C15324T C17470T C21191T A23148G A23403G T27125C C28854T AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-

EPI_ISL_569050
 2020-08-05 2020-10-02
 France hCoV-19/France/IHU-1092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14293T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A C29625T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569051
 2020-08-05 2020-10-02
 France hCoV-19/France/IHU-1097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C5055T G11851T A12755G C14408T A23403G G24812T C26895T GGG28881AAC C28887T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569622
 2020-08-05 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0014/2020
 ATTAAAGGTTTATACCTTC1- C241T C1288T G1298A C2061T C3037T G3483T C14408T C18877T C19245T A23403G G25445T G25563T G28851T G29254T G29745A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_514449
 2020-08-06 2020-08-17
 United Kingdom hCoV-19/England/CAMB-1B5A65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C2189T C3037T G13520T C13860T C14408T T15978C T16284C G19109T A22496C A23403G C27925T GGG28881AAC G29477T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514451
 2020-08-06 2020-08-17
 United Kingdom hCoV-19/England/CAMB-1B5ACF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516606 LR882366
 2020-08-06 2020-08-21
 Switzerland 230073
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G3638R T5322K T5328K A5410R T5468Y G5554T A5563R C7224T C10052Y A10070W T10076W C14408T T17675Y G19891T C20736T C21575T A22904W C22938A G22992R A23122M A23403G C24034T G25249T G26152T C27532Y G28321T GGG28881AAC C29614T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_517594
 2020-08-06 2020-08-24
 United Kingdom hCoV-19/Wales/PHWC-169B4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T T3049C CC14407TT G21624T A23403G C26013G G27877T A28523G GGG28881AAC

EPI_ISL_524487
 2020-08-06 2020-08-28
 United Kingdom hCoV-19/England/BRIS-133883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C3037T A3625T C8782T C10755T C11195T C14408T A23403G G23405A G24077T G26268T GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524488
 2020-08-06 2020-08-28
 United Kingdom hCoV-19/England/BRIS-133874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C3037T A3625T C8782T C10755T C11195T C14408T A23403G G23405A G24077T G26268T GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_524490
 2020-08-06 2020-08-28
 United Kingdom hCoV-19/England/BRIS-133892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C3037T A3625T C8782T C10755T C11195T C14408T A23403G G23405A G24077T G26268T GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526341
 2020-08-06 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97FE27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2143T C3037T C5826T A11923G C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526343
 2020-08-06 2020-09-01
 United Kingdom hCoV-19/England/ALDP-97FE45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2143T C3037T C5826T A11923G C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526348
 2020-08-06 2020-09-01
 United Kingdom hCoV-19/England/ALDP-980579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T C17745T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526350
 2020-08-06 2020-09-01
 United Kingdom hCoV-19/England/ALDP-9805A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526518
 2020-08-06 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB7177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526595 MT956719
 2020-08-06 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1109/2020
 ATTAA1- C241T C1059T G2286A C3037T A4197G C14408T A23403G G25563T C25703T C28606T A28715T G29140T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526596 MT956720
 2020-08-06 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1110/2020
 ATT1- C241T C527T C1059T C1302T C1385T G1738T C3037T G3242A C11916T C14408T C19151T C20178T G22205T G22992A A23403G G25563T G27916T C28087T C28776A C29160T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526597 MT956721
 2020-08-06 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1111/2020
 ATTAAAGGTT1- C241T C1059T C1385T G1738T C2197T C3037T G3242A T11701C C11916T T14171C C14408T G17158A T20376C A23403G G25563T C28087T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_526598 MT956722
 2020-08-06 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T833C C1059T C3037T C7279T C13458T C14408T T14867C G18898T A23403G G25563T C25904T C27964T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_526599 MT956723
 2020-08-06 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1113/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T T6055C G8083A C10319T C14408T C14805T A18424G G20679T C21304T A23403G G24368T G25563T G25907T T27384C C27964T C28472T C28869T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_527387
 2020-08-06 2020-09-03
 United States hCoV-19/USA/PR-B40A/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T833C C1059T C3037T C5512T C6541T C9515T C11379T C14408T C17125T A19175C T19839C A22320G A23403G G25523T G25563T C27964T T29685G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_527388
 2020-08-06 2020-09-03
 United States hCoV-19/USA/PR-B41C/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C815T C3037T C3411T T7657C T10795C C11152T C14408T G17338A C18452T A23403G G25437T G26428T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861C

EPI_ISL_529536
 2020-08-06 2020-09-10
 United Kingdom hCoV-19/England/ALDP-980236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529537
 2020-08-06 2020-09-10
 United Kingdom hCoV-19/England/ALDP-980281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T G8102A C14408T A23403G C25096T G28314T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529538
 2020-08-06 2020-09-10
 United Kingdom hCoV-19/England/ALDP-98056A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T G8102A C14408T A23403G A24735G C25096T G28314T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529539
 2020-08-06 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9805B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11923G C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529540
 2020-08-06 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9805C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T A23403G C23525T A28169G G28655T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529573
 2020-08-06 2020-09-10
 United Kingdom hCoV-19/England/ALDP-98634C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T A13809C C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529700
 2020-08-06 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169CB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC AAA29901-

EPI_ISL_529943 MT993870
 2020-08-06 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1252/2020
 ATTAAAGGTTTATACC1- C241T C3037T T9784C C14408T C16457T C18877T G21786T A23403G G25563T C28890T T29710A

EPI_ISL_529944 MT993871
 2020-08-06 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C18877T G21786T G21793A A23403G G25563T C28890T T29710A C29870A

EPI_ISL_529945 MT993872
 2020-08-06 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1254/2020
 C241T C3037T C14408T C18877T G21786T A23403G G25563T C28890T T29710A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_529946 MT993873
 2020-08-06 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1255/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T C18877T G21786T G21793A A23403G G25563T C28890T T29710A

EPI_ISL_529947 MT993874
 2020-08-06 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1257/2020
 ATTA1- C241T C3037T C14408T C18877T G21786T G21793A A23403G G25563T C28890T T29710A

EPI_ISL_529948 MT993875
 2020-08-06 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1258/2020
 ATTAA1- C20M C241T C3037T C14408T C18877T G21786T A23403G G25563T C28890T T29710A C29870A

EPI_ISL_529949 MT993876
 2020-08-06 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C14408T C18877T G21786T G21793A A23403G G25563T C28890T T29710A C29870A

EPI_ISL_529950 MT993877
 2020-08-06 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1260/2020
 ATTAAA1- C241T C3037T C14408T C18877T G21786T A23403G G25563T C28890T T29710A CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_529951 MT993878
 2020-08-06 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1261/2020
 A1M C241T C3037T C14408T C18877T G21786T G21793A A23403G G25563T C28890T T29710A

EPI_ISL_529952 MT993879
 2020-08-06 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1262/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C3037T C14408T C18877T T21664G G21786T A23403G G25563T C28890T T29710A C29870A

EPI_ISL_529953 MT993880
 2020-08-06 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1263/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C14408T C18877T G21786T A23403G G25563T C28890T T29710A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_530132 MT994394
 2020-08-06 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2775/2020
 ATTAAAGGTTTATA1- C241T G271T C3037T C4898T C10228T C14408T C18486T A20268G T22162C A23403G C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_531864
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96017B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T T18831C C21637T A23403G C25002T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531868
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9601C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A C28312T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531873
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9600F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531877
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C27945T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531880
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531881
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95FFFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531882
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531884
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9600D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531885
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531909
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531912
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T T17394Y G19542T C19718T C22388T A23403G C26060T C26889Y GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531925
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95FFEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531929
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95FE1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531930
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C11074T G11083T C14408T A23403G G27467T G27497T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531931
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96009C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T C7521Y G11851T C14184Y C14408T C14786T T20202Y A23403G G24812T C26895T G27514A GGG28881AAC C29197T G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531932
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T G23126C A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531979
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960C10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C24034T G25606T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531999
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960A70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532001
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960D1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532003
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960D2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532010
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960A61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532021
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960A8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532052
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960A43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532086
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960D4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532093
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960C01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532287
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E5FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T T27233A C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532288
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F0DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532302
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F5DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T C21660T A23403G C24700A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532308
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95EC33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2299T G2305T C3037T G3955T TCAAATTCG6329- C6539T A10127G C14408T A23403G G23426T C23655T T25663C C26936T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532309
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G862T C3037T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532312
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T G24626T C25000T C26111T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532313
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F5BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C10369T C14177T C14408T G18674A A23403G C25553T C28121T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532316
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F9B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G18067K G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532319
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E7D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C10369T C14177T C14408T G18674A A23403G C25553T C28121Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532322
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95ED4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T A9244G G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532323
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F86B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T A23403G G23438T C27889T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532331
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95EE6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G C28000T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532333
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532340
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F9E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532343
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F5FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532347
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95EF3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G18170T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532351
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95FA92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532355
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95FB71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532357
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95EFD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G C28000T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532359
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95EF76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A G12769T C13536T C14408T T20484G A23403G C23731T C25000T GGG28881AAC C29545T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532363
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95E617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532368
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95FA56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532373
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95ED9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2299T G2305T C3037T G3955T TCAAATTCG6329- C6539T A10127G C14408T A23403G G23426T C23655T T25663C C26936T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532377
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E76F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A T28414C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532382
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F91D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C24734Y C25000T G27281T C27739T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532383
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C10369T C14177T C14408T G18674A A23403G C25553T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532384
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F9D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G8258T G14202T C14408T G19542T C19718T C22388T A23403G C26060T T26511C GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532387
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532389
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T A12410G C14408T C17125T G18040T A18366G C18788T T19839C T21093C A23403G C25703T G26109T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532390
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95FA47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532395
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F77D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1470A T1910G G2477A C3037T T7198C C8311T G10097A A10323G C11653T A11991G T12184C C14408T C16954T A17615G G18859T T20482G G22638A A23403G C23731T C25000T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532396
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F6DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532399
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F90E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C T4874C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C24034T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532404
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F9C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28895T G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532406
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E6EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T G16852A C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532409
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T C22227T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532412
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F78C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1470A T1910G G2477A C3037T T7198C C8311T G10097A T10200K A10323G C11653T A11991G T12184C C14408T C16954T A17615G G18859T T20482G G22638A A23403G C23731T C25000T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532420
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EF85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3786G C5055T G11851T C14408T C14786T G17592T G19348T A23403G G24812T C26895T G28817T GGG28881AAC G29553T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532421
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F6BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C10369T C14177T C14408T G18674A A23403G C25553T C28121T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532424
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F50A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C936T C1960T C3037T C5301T G11083T C13247T C14408T C14937T T18144C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532425
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T C22227T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532432
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532433
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FA74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T C4582T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532436
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T G9463A C10626T C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC A29407G T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532437
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A C11124T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25889T G28396T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532439
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035A G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532451
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95FADE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T T21883C A23403G A24205T C27679T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532456
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532457
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95ECD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G C28000T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532461
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F3F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532463
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532464
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F33D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C27945Y GGG28881AAC G28925R G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532467
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F5CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532470
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95EF1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C18084T C19979Y C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532489
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G11083T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532492
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95FBCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532494
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F92C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532495
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F4A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T C21660T A23403G C24700A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532497
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F7B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G T25139C T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532499
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G C28000T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532501
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F4B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A C11124T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25889T G28396T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532503
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C10369T C14177T C14408T G18674A A23403G C25553T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532508
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95FA0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532516
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95EE3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G T22195Y A23403G C23731T C25000T G27281T C27739T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532521
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2667T C3037T T3217C C10252T G10265A C14408T C15720T A15972G C19718T A23403G G26700T G27021C T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532524
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F42B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C4002T C7518T G10097A C13536T C14408T A23403G C23731T G26063T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532529
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E7C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532532
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95EF58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G11083T T14100C C14408T A20268G C21614T A23403G CA28846TG C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532533
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F82F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C10369T C14177T C14408T G18674A A23403G C25553T C28121T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532534
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95EFEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532536
 2020-08-06 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T C23202T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534199
 2020-08-06 2020-09-11
 Latvia hCoV-19/Latvia/110/2020/P1
 C241T A1202G C3037T C8318T C12513T C13730T C14408T C18877T A23403G G23522A G25563T C25710T G28881A

EPI_ISL_534205
 2020-08-06 2020-09-11
 Latvia hCoV-19/Latvia/116/2020/P1
 C241T A1202G C3037T C12513T C13730T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_534231
 2020-08-06 2020-09-11
 Sweden hCoV-19/Sweden/20-08948/2020/P1
 C241T C3037T C7267T C9120T C14408T C18032T C20233T A23403G G24926T A27674T G28178T GGG28881AAC A29350G

EPI_ISL_534259
 2020-08-06 2020-09-11
 Sweden hCoV-19/Sweden/20-52647/2020/P1
 C241T C3037T G3621A A13712G C14408T G14874T C15738T A23403G GGG28881AAC

EPI_ISL_534694
 2020-08-06 2020-09-14
 United States hCoV-19/USA/PR-B3SB/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C2113T C3037T T7114A C11095T C14408T C14790T A23403G G25563T C29200T C29754T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_535396
 2020-08-06 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002495/2020
 ATTAAAGGTT1- C241T G1738T C3037T C6255T A7064G C14408T G19816T C22675T A23403G G24812T C25521T C26586T T27384C G27877T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_535400
 2020-08-06 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C601T C3037T C3811T C14396T C14408T A23403G G25126A GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_536575 MW035373
 2020-08-06 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4113T C14408T G21974C C23191T A23403G C23910T G27327T G28690T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536576 MW035374
 2020-08-06 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T T22150C A23403G C24381T C28977T C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537051
 2020-08-06 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537052
 2020-08-06 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DF2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T C20703T G21624T A23403G C26013G G27877T A28523G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537082
 2020-08-06 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DED4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T T7633C G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C C29095T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_538510
 2020-08-06 2020-09-17
 Indonesia hCoV-19/Indonesia/KS-NIHRD-PME4900/2020
 C241T C3037T A5827G C11750T C14408T C17795T C18877T A23403G G25563T C26735T A27341T C27765T C28833T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_540523
 2020-08-06 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540525
 2020-08-06 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T C22264T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540527
 2020-08-06 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2747T C3037T C3602T C6941T C8247T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540528
 2020-08-06 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2747T C3037T C3602T C6941T C8247T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540531
 2020-08-06 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9204G C10029T C10449T T12066C C14408T G16397T T19839C C21595T C21646T A23403G T25711C C26846T G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540537
 2020-08-06 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3896T C10029T C10449T T12066C C14408T C18647T T19839C C21595T C21646T A23403G T25711C C26846T T28009C G28134T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547441
 2020-08-06 2020-09-24
 United Kingdom hCoV-19/Gibraltar/203360726/2020
 ATTA1- C241T C2416T C3037T G8371T C9430T C14408T A15477T AGA20622TTT A23403G C23730T G25563T C28854T G29044A TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_547442
 2020-08-06 2020-09-24
 United Kingdom hCoV-19/Gibraltar/203360727/2020
 ATTA1- C241T C2416T C3037T G8371T C9430T C14408T A15477T AGA20622TTT A23403G C23730T G25563T C28854T G29044A AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_547678
 2020-08-06 2020-09-24
 United States hCoV-19/USA/WI-GMF-14101/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G2035T C3037T T3532C T9022C C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547966
 2020-08-06 2020-09-25
 Czech Republic hCoV-19/Czech Republic/NRL_8118-3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G17014T G17259T C18086T G23236T A23403G G25429T GGG28881AAC TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_548627
 2020-08-06 2020-09-26
 United States hCoV-19/USA/CA-CZB-4078/2020
 A1R C241T C379A C1059T C3037T C5869T G11893T C14408T G16707T G17261A G17280T G22225T A23403G C23604A A24922G C25117T G25563T G27632K C28775T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_548660
 2020-08-06 2020-09-26
 United States hCoV-19/USA/CA-CZB-4077/2020
 AT1- C241T C379A C512Y C1059T C3037T G4181A C5869T T9721Y G11893T T12720G C14408T G16707T G17261A G17280T G22225T A23403G C23604A C23758Y A24922G C25117T G25563T C28775T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_548670
 2020-08-06 2020-09-26
 United States hCoV-19/USA/CA-CZB-4028/2020
 AT1- T130Y C241T G2173T C3037T G4504T C4551T C6633T A6646R C11454T C14408T A20268G C22286M A23403G G23628T T24076C C26464T C28854T C29541T C29555T C29721T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_549055
 2020-08-06 2020-09-28
 Norway hCoV-19/Norway/3032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C2973T C3037T C6573T A6659G G12191T C13261T C14408T T16479C C18463T A23403G G28109T GGG28881AAC CTCCTG28890- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549061
 2020-08-06 2020-09-28
 Norway hCoV-19/Norway/3028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T G21830T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549121
 2020-08-06 2020-09-28
 Norway hCoV-19/Norway/3026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10332T C10525T C10582T G10688T G11851T C14230A C14408T G21800T G21830T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549123
 2020-08-06 2020-09-28
 Norway hCoV-19/Norway/3080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T A23403G G23438T C23939T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549137
 2020-08-06 2020-09-28
 Norway hCoV-19/Norway/3114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549138
 2020-08-06 2020-09-28
 Norway hCoV-19/Norway/3115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT C7318T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549139
 2020-08-06 2020-09-28
 Norway hCoV-19/Norway/3116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549140
 2020-08-06 2020-09-28
 Norway hCoV-19/Norway/3117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549141
 2020-08-06 2020-09-28
 Norway hCoV-19/Norway/3118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549142
 2020-08-06 2020-09-28
 Norway hCoV-19/Norway/3119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549144
 2020-08-06 2020-09-28
 Norway hCoV-19/Norway/3120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C21454A C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549145
 2020-08-06 2020-09-28
 Norway hCoV-19/Norway/3121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549195 MW040623
 2020-08-06 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1413/2020
 ATT1- C241T C1059T C3037T C7926T G9928T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T A28574G C28869T G29422T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_549197 MW040625
 2020-08-06 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G248T C335T C934T C1059T T2330G C3037T A3633G C9120T A12197C C14408T T16425G C22450T A23403G G25563T T27384C C28830T C29119T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549199 MW040627
 2020-08-06 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1417/2020
 AT1- C241T C1059T C3037T C10319T C14408T G16710T G20176T A23403G A25121T G25563T C27964T G29000T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_560613
 2020-08-06 2020-09-29
 France hCoV-19/France/BR8946/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C18264T G19254T T19893C A21137G A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560615
 2020-08-06 2020-09-29
 France hCoV-19/France/BR8948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1267T C1878T A2748T C3037T C4002T C7564T G10097A C13536T C13694T C14408T A23403G C23731T A27660G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560990
 2020-08-06 2020-09-30
 Sweden hCoV-19/Sweden/20-52649/2020
 C241T C335T C1059T C3037T C10868T C14408T A21371G A23403G G25563T A25864G G25922T C26010T T28082C C28887T

EPI_ISL_562660
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18377T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562705
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C482Y G558K G660K G663K A1163T G2036K G2604K G3004K C3037T C3551Y G3564K G4505K G5375K G5847K G5880K G6483K G7038K T7540C G8696K G8708K G8817R G9141K G10986K G11535K G12164K G13571K G14277K C14408T G14548R G15769K G16647T G17096K GG17848KK C18555T G22018K T22825C G22992A G23401A A23403G G24557K G24933K G26526T G28079K GGG28881AAC AGT29756- G29779K G29781K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563254
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC11114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C1758Y C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563272
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC11152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563724
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC13421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563726
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC13424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G G25690T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563729
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC13431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T C15371T G16647T A17337G G17418A C18555T A22102G G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563730
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC13432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4206T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563731
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC13433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_563732
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC13436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T G1914T C3037T C7162T T7540C C14408T G16647T C18555T G20208T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564318
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G558K G660K G663K A1163T G2036K G2604K C3037T C3551Y G3564K G4505K G5375K G5847K G5880K G6483K G7017K C7162T G7214K T7540C G8790K G9141K G9249K G10986K G11392K G11535K G12164K G13571K G14277K C14408T G14548K G15769K G16647T G17096K GG17848KK C18555T G19086K G22018K G22899K G22992A G23401A A23403G G24557K G24933K G28079K GGG28881AAC G29779K G29781K TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564346
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G15575K G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564350
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25290T T28015A T28382Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564410
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564411
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G20489K G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564551
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564613
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G18756A G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564614
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C G28460A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564624
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3509R T7540C A14084G C14408T G16647T C18555T C21575Y G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564661
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C10202T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564733
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T4950K T7540C C14408T G16647T C18555T G22520R G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564735
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26447T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564739
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564740
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C75T C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564741
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G18854T G22992A G23401A A23403G C23655T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564744
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22315C G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564745
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22825C G22992A G23401A A23403G G26526T A28874G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564746
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564748
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3860T T7540C C14408T C15352T G16647T C18555T C21812T G22992A G23401A A23403G G24992C A26162G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564749
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7927/2020
 ATTAAAGGTTTATACCTTCCC1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29708Y TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564751
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992R G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564752
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564753
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7931/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564754
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7932/2020
 ATTAAAGGTTTATACCT1- C241T A1163T T1432C C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564766
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C920T A1163T C3037T T7540C G13762A C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564768
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19554T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564769
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29118T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564771
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564772
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29118T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564773
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7962/2020
 ATTAAAGGTTTATA1- C241T A1163T C3037T T7540C A10356R C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564774
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T T21291Y C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564775
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C2227T C3037T T7540C A13488G C14408T G14710T G16647T C18555T C18568T G21850A G22992A G23401A A23403G C24897T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564776
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564779
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC7970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564865
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC8127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T C21575T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564866
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC8129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C344Y A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G A27369G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564867
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC8130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564868
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC8131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5812Y T7540C C14408T G16647T C18555T T22825C G22992A G23401A A23403G G26526T GGG28881AAC G29474S ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564871
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC8143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C12484T A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C A28741G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564873
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC8147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_564877
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC8159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T C21575T G22992A G23401A A23403G C28674Y GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_564900
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC8208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564913
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC8238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6120Y T7540C C10377Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564914
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC8239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_564917
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC8243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27802K GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564930
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC8303/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_564937
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC8315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C G13762A C14408T C15371T G16647T A17337G C18555T C21952T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564958
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC8348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G A27932G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564960
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC8350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1722T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C27567T C28087T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_565385
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC9083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18814Y G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565603
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC9562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565604
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC9564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T C20629T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565605
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC9567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_565606
 2020-08-06 2020-09-30
 Australia hCoV-19/Australia/VIC9570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22825C G22992A G23401A A23403G G26526T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_514453
 2020-08-07 2020-08-17
 United Kingdom hCoV-19/England/NOTT-112ED3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3102G C14408T C15180T T16251C T19839C A22893G A23403G G28509A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517589
 2020-08-07 2020-08-24
 United Kingdom hCoV-19/Scotland/EDB7181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522929 MT929150
 2020-08-07 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5055T C5672T A7837C C14408T T14700C G16647C G23120T A23403G C25854T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522936 MT929157
 2020-08-07 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A C715T C1059T C3037T C4876T C11916T C14408T C18555T A23403G A23586G G25563T A27489G C28045T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522937 MT929158
 2020-08-07 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T A2375C G2782T C3037T A11983G C14408T C16887T A23403G T23878C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522939
 2020-08-07 2020-08-26
 United States hCoV-19/USA/WI-UW-1172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C715T C1059T G1957T C3037T C4668T G6532T C11916T C14408T G15093- A23403G A23586G G25563T G26918T ACGATCG29749- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523275
 2020-08-07 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C854T C3037T C12357T C14408T C17135T C17410T G17632T C18877T G20718T C22444T A23403G G25563T C26735T C28854T C29520T TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_523276
 2020-08-07 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12357T C14408T C17135T G17632T C18877T C19512T G20718T C22444T A23403G G25563T C26735T C28854T C29719G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523277
 2020-08-07 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12357T C14408T C17135T G17632T C18877T C19512T G20718T C22444T A23403G G25563T C26735T C28854T C29719G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523543
 2020-08-07 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T G28817T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523544
 2020-08-07 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1236G C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523856 LR880587
 2020-08-07 2020-08-27
 Switzerland 240001
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A C14358T C14408T A21137G A23403G C25413T G25690T T27134C G27214R GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523857 LR880580
 2020-08-07 2020-08-27
 Switzerland 240002
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2037T C2570T C3037T C6578T T6891Y T6964Y G10631A C12085T C12559T C14408T C15324T G16900A G21850K A23403G C27765T C28893T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523859 LR880577
 2020-08-07 2020-08-27
 Switzerland 240004
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T C14408T C18252T G23126K A23403G C26882T G28396R GGG28881AAC G29227T G29462T C29614Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523860 LR880583
 2020-08-07 2020-08-27
 Switzerland 240005
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2659T C3037T C7420Y C7945Y G9130T G9871T A12825G C14408T A23403G T27319C G28487A C28868T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523861 LR880575
 2020-08-07 2020-08-27
 Switzerland 240006
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C583T A1262R C3037T A3058W T3073W AG3133WR T3144K C7267T T10076W T11672W C14408T G22346K A23403G C25821T C25824T T27986C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523864 LR880588
 2020-08-07 2020-08-27
 Switzerland 240009
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1804R C3037T G3239A G7042K G11083T C14408T C15324T T17142W T17688Y G21334T A23403G G28655A G28881A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523865 LR880579
 2020-08-07 2020-08-27
 Switzerland 240010
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1288Y C3037T C3373A C14358T C14408T A23403G C25413T G25690T T27134C G27214R GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_526528
 2020-08-07 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB7353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T G22343T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529577
 2020-08-07 2020-09-10
 United Kingdom hCoV-19/England/ALDP-98733C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529704
 2020-08-07 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169CF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1431C C3037T T3049C C14408T G21624T A23403G G24794T C26013G G27877T A28523G GGG28881AAC

EPI_ISL_530805
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C6E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T G15646T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530837
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C7735T C8318A C10615T C14408T G18859T G21624T A23403G C26571A G28658A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530861
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C C799T A2869G C3037T G6352T C6445T C10868T C14408T G15652T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530862
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96C722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1678C C3037T C5055T T7153C G11851T C14408T C14786T G20477T A23403G G24812T C26895T GGG28881AAC C29197T G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530869
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96C6BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T C12809T C14408T C19524T C20759T A23403G T24125Y G25088T C26912T C28292A GGG28881AAC C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530885
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C69E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C7735T C8318A C10615T C14408T C14741T G18859T G21624T A23403G G25552T C26571A G28658A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530902
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96C6AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T C12809T C14408T C19524T C20759T A23403G G25088T C26912T C28292A GGG28881AAC C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530929
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96C6CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T C12809T C14408T C19524T C20759T A23403G T24125Y G25088T C26912T C28292A GGG28881AAC C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531542
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963E62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3486A C3653T C14408T C15319T A23403G C25624T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531830
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-961F8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20019G A22681T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531866
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95FEB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T G1042T C1514T C3037T C5100T G6127A C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531867
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FE96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G A24409G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531870
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95FFB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531874
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FD11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531876
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FBAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531886
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FE87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G A24409G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531889
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95FCF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C10456T G14202T C14408T G19542T C19718T C22388T A23403G C24034T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531890
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95FF39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G G25281K C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531892
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95FE78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28960T G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531897
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95FEF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531913
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95FCD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531917
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FED2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G A24409G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531918
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95FDB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C24034T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531919
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95FF66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G18816K G19542T C19718T C22388T A23403G G23909K G26020K C26060T T26511C GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531920
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FCBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531923
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95FFC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C7735T C8318A C10615T C14408T G18859T G21624T A23403G C26571A G28658A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531924
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95FEC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C4965T A8072G C14408T A16011G A21213G T22334A A23403G A25759G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531936
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T C6445T C10868T C14408T G15652T A23403G G23438T GGG28881AAC C29095T C29400T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531942
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9603EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531967
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9612A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T G9463A C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC A29407G T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531991
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9603C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C C11866T T13670C C14408T A23403G C23731T C25714T G28580T GGG28881AAC G29690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532014
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9604DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532029
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960955/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A G2468R C3037T C3486T T9205C C14408T C16887T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532053
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C3653Y C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G28073K GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532063
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-960788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532072
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9604FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T A23403G C23731T C25714T G27762S G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532105
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-960463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532123
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96073D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532290
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F1BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T C8299T C11020T C11095T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532324
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E5DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T G9136T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532341
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T G28736K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532344
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F0CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T C10376T A10978T C14408T C15763T C17104T A20268G T20799C C22879A A23403G G24770T C28507T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532375
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F4C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532391
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T C26022T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532393
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F19D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T T3163C C14408T A23403G T27856G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532398
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F25E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T G9463A C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC A29407G T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532408
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C12455T C14408T C16887T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532411
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95EB18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G T27815C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532413
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532465
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E5B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T C8326T T10453C C11195T C14408T C15960T G16068K T16993C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532466
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F24F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10183T G10265A C14408T C15720T A15972G C19718T A23403G A25897T G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532500
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F0BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T C22227Y A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532504
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F31F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T C18555Y A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532507
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E7BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T C27625T GGG28881AAC C29037T G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532523
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532525
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F28B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T C8299T C11020T C11095T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532528
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95EF2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T C26022T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532538
 2020-08-07 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95E6F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T T15843A C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534200
 2020-08-07 2020-09-11
 Latvia hCoV-19/Latvia/111/2020/P1
 C241T A1202G C3037T C12513T C13730T C14408T C18877T A23403G G25563T C25710T G27877T G28881A

EPI_ISL_534202
 2020-08-07 2020-09-11
 Latvia hCoV-19/Latvia/113/2020/P1
 C241T A1202G C3037T C12513T C13730T C14408T C18877T A23403G G25563T C25710T G27877T G28881A

EPI_ISL_534409
 2020-08-07 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T A15942G G19542T C19718T C22388T A23403G C24034T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534421
 2020-08-07 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95DFA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534422
 2020-08-07 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4321Y C7113T C8917T G9389A C11074T C14408T G22708A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534426
 2020-08-07 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95DF95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534431
 2020-08-07 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E18F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7113T C8917T G9389A C11074T C14408T G22708A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535390
 2020-08-07 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C3037T C4002T G10097A C13536T C13945T C14408T C18747T A23403G C23731T G27841T G28079T GGG28881AAC G29425T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535392
 2020-08-07 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G12067T C12400T C12747T C14408T C15324T A23365C A23403G G26918T G28077T G28809T A29016G TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535393
 2020-08-07 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002486/2020
 ATTAAAGGTTTA1- C241T C3037T A3989G G11447A C14408T C18747T T19138C C22675T A23403G A25505T C28253T G28307T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_535394
 2020-08-07 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A8133G C14408T A23403G G28373T GGG28881AAC G29425T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_535395
 2020-08-07 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002491/2020
 ATTA1- C241T C3037T C8327T A11943T C14408T G16707T C19814T G22638A A23403G C23625T C28256T GGG28881AAC G29742T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_535398
 2020-08-07 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002501/2020
 ATTAAAGGTTTA1- C241T C3037T A7064G C14408T A17223G C22675T A23403G GGG28881AAC C29137T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_535403
 2020-08-07 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002520/2020
 ATTAAAGGTT1- C241T C3037T T10006C T12503C C14408T G18583T A23403G G25362A G25770T G26450T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_535404
 2020-08-07 2020-09-15
 South Africa hCoV-19/South Africa/KRISP-K002526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T5149G C7604T T12503C C14408T C16017T C22480T A23403G G26849T GGG28881AAC C29144T C29721T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_536583 MW035381
 2020-08-07 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536970
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DF0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1214T C3037T A9339G G14044A C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536971
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DCF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536982
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DDAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C10369T C14408T C18744T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537003
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G T27815C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537019
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DD9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T T3163C G11893R C14408T A23403G T27856G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537022
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T C27526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537036
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DE6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T C11020T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537053
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DE2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T C10376T A10978T C14408T C15763T C17104T A20268G T20799C C22879A A23403G G24770T C28507T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537067
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DF3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4158T C14408T A15647C A19182G A23403G C26464T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537068
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DCCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T C8299T C11020T C11095T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537076
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DDE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T G6389A C6395T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537078
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-961699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11758T C14408T A23403G G25617T G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537086
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DE98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3369A G4105T C4391A C11124T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537087
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DEE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T T21570G C21575T A23403G T25473C C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537088
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DE89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T G2035T C3037T G8102T A13949G C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537090
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DD31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C12459T C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537101
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DD22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T C11020T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537111
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E50B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537128
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DFFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11563T C14408T A23403G C24198T G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537131
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DEB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C936T C1960T A2440G C2570T C3037T C5301T T10330C G11083T C13247T C14408T C14937T T18144C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537138
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DCE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447A C2536T C3037T G9463A C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC A29407G T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537139
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DE10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C11152T C14408T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537140
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DDC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C936T C1960T A2440G C2570T C3037T C5301T C8683Y T10330Y G11083T C13247T C14408T C14937T T18144C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537141
 2020-08-07 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DF1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540533
 2020-08-07 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G G25455T A25505G G25906C G25996T G27706T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540534
 2020-08-07 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T G29239T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540541
 2020-08-07 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G T27922C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540542
 2020-08-07 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G T27922C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540543
 2020-08-07 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9130T G11083T C14408T A23403G G25563T T27319C G28487A C28868T GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540544
 2020-08-07 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T G26062C C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540547
 2020-08-07 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8802T GATATGGTT11267- A14033G C14408T C17410T G18756T C20402T A23403G GGG28881AAC C29545A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540548
 2020-08-07 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G T27922C A28249G GGG28881AAC C29738T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540550
 2020-08-07 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7720T C14408T C17402T A20742C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540551
 2020-08-07 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540555
 2020-08-07 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174A C241T C3037T C14408T A20742C A23403G T27922C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540558
 2020-08-07 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G G25455T A25505G GG25906CT G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541209
 2020-08-07 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1277/2020
 AT1- C241T C815T T2149C C3037T A3258G C3411T T10795C C14408T C18452T A23403G G25437T A25486G C27012T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_541704
 2020-08-07 2020-09-23
 India hCoV-19/India/MH-NIV-153805/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A T8176A G11939A C14408T C21621T A23403G C27149T GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_546936
 2020-08-07 2020-09-24
 Czech Republic hCoV-19/Czech Republic/NRL-8118-2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5554T C14408T G19891T C21575T C22938A A23403G C24034T G25249T G26152T C27532T G28321T GGG28881AAC C29614T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_547439
 2020-08-07 2020-09-24
 United Kingdom hCoV-19/Gibraltar/203360724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895Y GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_547440
 2020-08-07 2020-09-24
 United Kingdom hCoV-19/Gibraltar/203360725/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T C5055T G11851T C14408T C14786T A18019R A23403G G24812T C26895Y GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_547967
 2020-08-07 2020-09-25
 Czech Republic hCoV-19/Czech Republic/NRL_8118-4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C186T C241T C313T C3037T C14408T G17014T G17259T C18086T G23236T A23403G G25429T GGG28881AAC TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_547968
 2020-08-07 2020-09-25
 Czech Republic hCoV-19/Czech Republic/NRL_8118-5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5554T C14408T G19891T C21575T C22938A A23403G C24034T G25249T G26152T C27532T G28321T GGG28881AAC C29614T TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_548664
 2020-08-07 2020-09-26
 United States hCoV-19/USA/CA-CZB-4030/2020
 AT1- C241T G347A A2015R C3037T C5239T G11083T C14408T A15002T G18149T T20261K A20268G A23403G T24076C C28854T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_549046
 2020-08-07 2020-09-28
 Norway hCoV-19/Norway/3179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549082
 2020-08-07 2020-09-28
 Norway hCoV-19/Norway/3053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T G21830T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549085
 2020-08-07 2020-09-28
 Norway hCoV-19/Norway/3073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A642G T772C G2398T A2869G C3037T G6352T C6445T C10868T C14408T G14857C G15652T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549086
 2020-08-07 2020-09-28
 Norway hCoV-19/Norway/3075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6151A C6701T C14408T C16575T C17876T G18397T C19170T G19509A A23403G G28041A G28077T CA28253TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549146
 2020-08-07 2020-09-28
 Norway hCoV-19/Norway/3123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549147
 2020-08-07 2020-09-28
 Norway hCoV-19/Norway/3124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549148
 2020-08-07 2020-09-28
 Norway hCoV-19/Norway/3125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549149
 2020-08-07 2020-09-28
 Norway hCoV-19/Norway/3126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549150
 2020-08-07 2020-09-28
 Norway hCoV-19/Norway/3127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549151
 2020-08-07 2020-09-28
 Norway hCoV-19/Norway/3128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549152
 2020-08-07 2020-09-28
 Norway hCoV-19/Norway/3130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549153
 2020-08-07 2020-09-28
 Norway hCoV-19/Norway/3131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549155
 2020-08-07 2020-09-28
 Norway hCoV-19/Norway/3132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549156
 2020-08-07 2020-09-28
 Norway hCoV-19/Norway/3133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549163
 2020-08-07 2020-09-28
 Norway hCoV-19/Norway/3144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560616
 2020-08-07 2020-09-29
 France hCoV-19/France/BR8949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C18264T G19254T T19893C A21137G A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560617
 2020-08-07 2020-09-29
 France hCoV-19/France/BR8950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T G5210A C14408T C15324T C17470T C21191T A23148G A23403G T27125C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560618
 2020-08-07 2020-09-29
 France hCoV-19/France/BR8951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6286T C8290T C14408T G21255C C22227T A23403G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560989
 2020-08-07 2020-09-30
 Sweden hCoV-19/Sweden/20-52646/2020
 C241T C335T C1059T C3037T C8668T C10868T C14408T A21371G A23403G G25563T A25864G G25922T C26010T T28082C C28887T

EPI_ISL_561292
 2020-08-07 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C3037T T5303C C14408T G14430C A20268G G22706T A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562659
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC7661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T GTCATGTTA510- A1163T C3037T T7540C C8480T C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562945
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC10523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21575Y G22992A G23401A A23403G T24660C GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_562962
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC10569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C G9918A C14408T C15371T G16647T A17337G C18452T C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_563262
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC11132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C T8431C C14408T G16647T C18555T G22992A G23401A A23403G C23635T GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_563266
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC11140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563283
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC11175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C17642T C18555T G22992A G23401A A23403G G24794K A26162G C27679T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563676
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC13329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_563734
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC13439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25701Y A26162G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564348
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC7339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C482Y G558K A1163T T1432C C3037T G3564K G5375K G7038K T7540C G9249K G10986K G12164K G13571K G14241T C14408T G16647T C18555T G22899K G22992A G23401A A23403G G24557K G24933K G28079K GGG28881AAC C29546T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564412
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC7436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24023Y G28123K GGG28881AAC G29024K G29030K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564544
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC7639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC C28887T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_564562
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC7665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C482Y G558K G660K A1163T G2036K G2604K C3037T C3505Y C3551Y G3564K G4505K G5233R G5375K G6483K G7038K G7214K T7540C G8790K G9141K G9249K G10986K G11392K G11535K G12164K G12795K G13571K A14084G G14277K C14408T G15769K G16647T G17096K G17848K C18555T G22899K G22992A G23401A A23403G C23707T G24557K G24933K T27785C G28079K GGG28881AAC G29779K G29781K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564564
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC7667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C482Y G558K G660K G663K A1163T G2036K G2604K G3004K C3037T C3505Y C3551Y G3564K G4505K G5233R G5375K G5880K C6468Y G6483K G7038K G7214K G7246K T7540C G8790K G9141K G9249K G10986K G11392K G11535K G12164K G12795K G13571K A14084G G14277K C14408T G14548R G15769K G16647T G16787K G17096K G17848K C18555T G19086K G19252K G21123K G22018K G22899K G22992A G23401A A23403G C23707T G24557K G24933K T27785C G28079K G28460A GGG28881AAC G29779K G29781K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564728
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC7886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A39R C241T A1163T C3037T T3043C C5986Y T7540C C9996T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564734
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC7895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C1427Y C3037T T7540C C14408T A14717R G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564736
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC7899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G C27881T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564747
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC7925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C4993Y T7540C C14408T G16647T C18555T G22344K G22992A G23401A A23403G A26162G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564770
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC7959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T C5884T G5990K T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564874
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC8150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564875
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC8153/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564952
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC8340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A2410G C3037T C3554M GT5743SY T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G A27932G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564953
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC8341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T26551C T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564954
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC8342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C C10965Y G11083K C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564957
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC8346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G A27932G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564959
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC8349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T GT5743SY T7540C C14408T G16647T T17497Y C18555T C18814T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565402
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC9131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G558K G660K G663K A1163T G2036K G2247K G2604K C3037T G3259K G3564K C3737T G4505K G5375K G5880K G6483K C6539T G7038K G7214K T7540C G8790K G9249K G10986K G11392K G11535K G12164K G12795K G14277K C14408T G14548R G15769K G16647T G16787K G17096K GG17848KK G18318K C18555T G19086K C19217T G21255C G21281K G22018K G22899K G22992A G23401A A23403G G24557K G24933K G28079K C28725T GGG28881AAC G29779K G29781K ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565513
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC9346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C2401Y C3037T T4303C T7540C C10626T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565521
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC9363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C1758T C3037T T7540C C14408T G16647T C18555T C20628T C22480T G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_565756
 2020-08-07 2020-09-30
 Australia hCoV-19/Australia/VIC9874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_569031
 2020-08-07 2020-10-02
 France hCoV-19/France/IHU-0985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T AGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29799-

EPI_ISL_569053
 2020-08-07 2020-10-02
 France hCoV-19/France/IHU-1126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C601T C1059T C3037T C6255T G7042T C10582T G11083T A13868G C14408T C14697T G15327T T17023A A20334G C20451T C23277T A23403G T25473C G25563T T26427C G28812T G28903T CTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29784-

EPI_ISL_569056
 2020-08-07 2020-10-02
 France hCoV-19/France/IHU-1134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569057
 2020-08-07 2020-10-02
 France hCoV-19/France/IHU-1135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2570T C3037T G3971A C6578T G10631A C12559T C14408T C15324T G16900A A23403G C27765T C28893T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569058
 2020-08-07 2020-10-02
 France hCoV-19/France/IHU-1138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C A27426G G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569060
 2020-08-07 2020-10-02
 France hCoV-19/France/IHU-1146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1843T C3037T C14408T C15324T C16193T C18060T T18358C C19593T A22404T C22450T A23403G G25785T C28253T G29692T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569145
 2020-08-07 2020-10-02
 France hCoV-19/France/IHU-1374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1912T C3037T G4561A G5210A C14408T C15324T C17470T C21191T A23148G A23403G T27125C C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MW023470
 2020-08-07 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1277/2020
 AT1- C241T C815T T2149C C3037T A3258G C3411T T10795C C14408T C18452T A23403G G25437T A25486G C27012T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_523809
 2020-08-08 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G17259T G19480A C20823T A23403G C24130T G27827T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523866 LR880576
 2020-08-08 2020-08-27
 Switzerland 240015
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A3060M T3144K C4752T A6948R T6978K G11842A A12759G A13449G C14408T G18292T G18782T A20268G A23403G C24621T G27703K C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523867 LR880573
 2020-08-08 2020-08-27
 Switzerland 240016
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T A29071G G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523908 LR880628
 2020-08-08 2020-08-27
 Switzerland 240070
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1303Y C2416T C3037T A3058R A3105R G8371T C9430T G11557K C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G T28630Y C28854T G29044A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_525417
 2020-08-08 2020-08-29
 Ireland hCoV-19/Ireland/72IRL04484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T G8368A A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527389
 2020-08-08 2020-09-03
 United States hCoV-19/USA/PR-B5C5/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C815T C958T C3037T C3411T C10228A T10795C C14408T C18452T A23403G G25437T C26028T C26042T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_529541
 2020-08-08 2020-09-10
 United Kingdom hCoV-19/England/ALDP-980B59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C936T C1960T A2440G C2570T C3037T C5301T G11083T C13247T C14408T C14937T T18144C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529542
 2020-08-08 2020-09-10
 United Kingdom hCoV-19/England/ALDP-980B68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529546
 2020-08-08 2020-09-10
 United Kingdom hCoV-19/England/ALDP-981666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C186T G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529578
 2020-08-08 2020-09-10
 United Kingdom hCoV-19/England/ALDP-987651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T A23403G C23525T A28169G G28655T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529579
 2020-08-08 2020-09-10
 United Kingdom hCoV-19/England/ALDP-987703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9096T A11923G C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529580
 2020-08-08 2020-09-10
 United Kingdom hCoV-19/England/ALDP-987712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11923G C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529581
 2020-08-08 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9877A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T G20274T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531050
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C936T C1960T A2440G C2570T C3037T C5301T T10330C G11083T C13247T C14408T C14937T T18144C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531633
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9633BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C14408T C15738T G16718A C17999T A23403G T26463G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531636
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-962980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531695
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96265C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T T25888C C28744T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531704
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96259B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531748
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531809
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-962188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25244T G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531863
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96355E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C24034T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532283
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T G2210A C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532285
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EC60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532297
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EC24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532300
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95ECBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532305
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EEF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T G15199K A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532336
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95F8B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T G4504T C7735T C8318A C10615T C14408T G18859T G21624T A23403G C26571A G28658A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532350
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EEE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532356
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95EE97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C12488T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532371
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EF0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC G28919T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532392
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EDC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20719Y A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532414
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95ECF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19072R G19542T C19718T C22388T A23403G C25282T G25302K C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532416
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EDD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532419
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EBFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532430
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95EDA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532444
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F41C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G26647A GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532446
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T G2210A C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532447
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95ED5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532450
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EDE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532452
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95ED03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532459
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C3177T C4570T G5558A C14408T G19348A A20268G C21627T A23403G C28833T G28881A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532468
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EBBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532474
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EC51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T G2001A C3037T C5100T G6127A C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532480
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95ED6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C18322T G19542T C19718T C22388T A23403G C26060T C26889T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532496
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EC42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532502
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EC06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532515
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F4FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C7488T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532517
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95EBCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T G1462K C3037T C4158T G4504K C7735T C8318A C10615T C14408T G18859T G21624T A23403G C26571A G28658A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532531
 2020-08-08 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F4EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C7488T G14202T C14408T G16106R G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534203
 2020-08-08 2020-09-11
 Latvia hCoV-19/Latvia/114/2020/P1
 C241T A1202G C3037T C8318T C12513T C13730T C14408T C18877T A23403G G25563T C25710T G28881A

EPI_ISL_534407
 2020-08-08 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534411
 2020-08-08 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E44A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C24034T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534433
 2020-08-08 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E2AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7113T C8917T G9389A C11074T C14408T G22708A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534436
 2020-08-08 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E1F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534437
 2020-08-08 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536411
 2020-08-08 2020-09-16
 China hCoV-19/Hong Kong/MV2007-00689/2020
 C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T C29585T T29867A

EPI_ISL_536969
 2020-08-08 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537001
 2020-08-08 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T G21204T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537006
 2020-08-08 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E0DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C13887T C14408T C21639T G21724T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537008
 2020-08-08 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DF68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C13724T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537021
 2020-08-08 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95DF77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C999T C1912T C3037T G4180T C4683T T10453C C11195T G13348T C14408T G14866A C17327T C21811T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537023
 2020-08-08 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E29B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2450T C2459T C3037T A10912G C14408T T20071C A23403G GGG28881AAC A29735G CGATCGAGTG29750- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537043
 2020-08-08 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7258C T8941C G12911A C12919T C14408T G15438T A20268G A23403G A27400G G28239R C29485T G29715T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537044
 2020-08-08 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T G2183A T2743G C3037T A9433T T9668C G10265A C14408T C14724T G17370T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537091
 2020-08-08 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E2C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T A23403G C25207T C25665T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537124
 2020-08-08 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E33E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21110T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537145
 2020-08-08 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E36B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T A5174R C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541706
 2020-08-08 2020-09-23
 India hCoV-19/India/MH-NIV-156143/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C346T C3037T C5544T C5700A C14408T G18412T G21800A C21897T A23403G C23997T A27218G GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_549032
 2020-08-08 2020-09-28
 Norway hCoV-19/Norway/3201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT C10519T A10985G G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549042
 2020-08-08 2020-09-28
 Norway hCoV-19/Norway/3140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G17280T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549088
 2020-08-08 2020-09-28
 Norway hCoV-19/Norway/3062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C512T G1487A G2447T C2695T C3037T G5194T A5560G G10265A C14408T C14484T C15141T A15972G T19497C C19718T C19806T C21077T C22530T A23403G G28077T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549157
 2020-08-08 2020-09-28
 Norway hCoV-19/Norway/3134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549158
 2020-08-08 2020-09-28
 Norway hCoV-19/Norway/3135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549159
 2020-08-08 2020-09-28
 Norway hCoV-19/Norway/3136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549160
 2020-08-08 2020-09-28
 Norway hCoV-19/Norway/3137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C24337T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549161
 2020-08-08 2020-09-28
 Norway hCoV-19/Norway/3138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C21454A C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549162
 2020-08-08 2020-09-28
 Norway hCoV-19/Norway/3139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C21454A C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552476
 2020-08-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982BB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552481
 2020-08-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9818D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T T5158C C5812T C6016T C8146T A8360R G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552506
 2020-08-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982BA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552566
 2020-08-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9818CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552614
 2020-08-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9814F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T T12045C A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T G26109T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552622
 2020-08-08 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9815F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C936T C1960T A2440G C2570T C3037T C5301T G11083T C13247T C14408T C14937T T18144C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560317
 2020-08-08 2020-09-28
 Russia hCoV-19/Russia/SVE-RII-MH231S/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C593T C3037T T10816C C11824T A23403G C28253T GGG28881AAC C29750T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_563264
 2020-08-08 2020-09-30
 Australia hCoV-19/Australia/VIC11135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563267
 2020-08-08 2020-09-30
 Australia hCoV-19/Australia/VIC11141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T T16983C C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563280
 2020-08-08 2020-09-30
 Australia hCoV-19/Australia/VIC11168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C11835Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563407
 2020-08-08 2020-09-30
 Australia hCoV-19/Australia/VIC11545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G558K A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G C25460T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563674
 2020-08-08 2020-09-30
 Australia hCoV-19/Australia/VIC13326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563783
 2020-08-08 2020-09-30
 Australia hCoV-19/Australia/VIC13608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24213Y C24912T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564349
 2020-08-08 2020-09-30
 Australia hCoV-19/Australia/VIC7343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G558K G660K A1163T T1432C G2036K G3004K C3037T G3564K G5375K G7038K T7540C G9141K G9249K G10986K G12164K G13571K G14241T G14277K C14408T G16647T C18555T G22018K G22992A G23401A A23403G C23520T G24557K G24933K C25528Y G28079K GGG28881AAC C29546T G29779K G29781K GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_564415
 2020-08-08 2020-09-30
 Australia hCoV-19/Australia/VIC7441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564559
 2020-08-08 2020-09-30
 Australia hCoV-19/Australia/VIC7659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C482Y G558K A1163T G2036K C3037T C3551Y G3564K G4505K G5375K G7038K T7540C G8790K G9249K G12164K A14084G G14277K C14408T G16647T C18555T G22018K G22899K G22992A G23401A A23403G C23707T G24557K G24933K T27785C GGG28881AAC G29781K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564560
 2020-08-08 2020-09-30
 Australia hCoV-19/Australia/VIC7660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C482Y G558K A1163T G2604K C3037T C3551Y G3564K G4505K G5375K G7038K T7540C G9141K G9249K G10986K G11392K G11535K G12164K G13571K A14084G G14277K C14408T G14548R G16647T C18555T G22899K G22992A G23401A A23403G C23707T G24557K G24933K T27785C G28079K GGG28881AAC G29779K G29781K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564620
 2020-08-08 2020-09-30
 Australia hCoV-19/Australia/VIC7742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC C29585T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564665
 2020-08-08 2020-09-30
 Australia hCoV-19/Australia/VIC7797/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T G431K A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564677
 2020-08-08 2020-09-30
 Australia hCoV-19/Australia/VIC7819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C T11541G C14408T G16647T A17337G C18555T G22992A G23401A A23403G C27393Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564765
 2020-08-08 2020-09-30
 Australia hCoV-19/Australia/VIC7951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G18984T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564903
 2020-08-08 2020-09-30
 Australia hCoV-19/Australia/VIC8212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_566065
 2020-08-08 2020-10-01
 United Kingdom hCoV-19/England/203260119/2020
 T13C C241T C313T C3037T C3369T C6573T C7113T A10991G C13730T C14408T A23403G G25681C G28396A GGG28881AAC A29549T AAAAAAAAAAAAAA29890-

EPI_ISL_568573
 2020-08-08 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T T4346C C9286T C10376T C14408T C14708T T22020C A23403G C28725T GGG28881AAC G29692T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_569063
 2020-08-08 2020-10-02
 France hCoV-19/France/IHU-1157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C C29284T G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569146
 2020-08-08 2020-10-02
 France hCoV-19/France/IHU-1377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T C8937T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT953879
 2020-08-08 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-79063144/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T T445C C3037T C6286T C14408T T16926C G21255C C22227T A23403G C26801G C27944T C28932T G29645T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT953880
 2020-08-08 2020-09-03
 Spain SARS-CoV-2/human/ESP/HUD-79063196/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

MT997210
 2020-08-08 2020-09-12
 United States SARS-CoV-2/human/USA/NC-SLPH-0017/2020
 ATTA1- G204T C241T G806A C1059T C3037T C11005T C14120T C14408T T19345Y A23403G G25563T T27210C C28977T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_517580
 2020-08-09 2020-08-24
 United Kingdom hCoV-19/Scotland/CVR3964/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3587T C7043T G7936A G8726A A10912G C11572T C14408T T14530G G18756T G22343A A23403G C28308T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522932 MT929153
 2020-08-09 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T T8082C G12202T C14408T C21431T A23403G G24199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522933 MT929154
 2020-08-09 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A C715T C1059T C3037T C4876T C11916T C14408T C18555T A23403G A23586G G25563T A27489G C28045T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523545
 2020-08-09 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G18105C G21255C C22227T A23403G C26801G C28932T G29645T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523546
 2020-08-09 2020-08-26
 Netherlands hCoV-19/Netherlands/UT-EMC-69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C679A C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T C25413T G25563T A26319G C28854T G29044A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523909 LR880615
 2020-08-09 2020-08-27
 Switzerland 240071
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5210A G9130T C14408T G16647K A23403G G26526K T27319C G28487A C28868T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_525418
 2020-08-09 2020-08-29
 Ireland hCoV-19/Ireland/72IRL06223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29422T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526352
 2020-08-09 2020-09-01
 United Kingdom hCoV-19/England/ALDP-981059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T T16764C C18508T T22391C A23403G GGG28881AAC C29077T A29282T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526353
 2020-08-09 2020-09-01
 United Kingdom hCoV-19/England/ALDP-98150F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526355
 2020-08-09 2020-09-01
 United Kingdom hCoV-19/England/ALDP-9819E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1679A T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526356
 2020-08-09 2020-09-01
 United Kingdom hCoV-19/England/ALDP-9819F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A21659G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526358
 2020-08-09 2020-09-01
 United Kingdom hCoV-19/England/ALDP-981A1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11923G C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526360
 2020-08-09 2020-09-01
 United Kingdom hCoV-19/England/ALDP-982207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526361
 2020-08-09 2020-09-01
 United Kingdom hCoV-19/England/ALDP-9823F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A21659G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526362
 2020-08-09 2020-09-01
 United Kingdom hCoV-19/England/ALDP-98243E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A21659G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526366
 2020-08-09 2020-09-01
 United Kingdom hCoV-19/England/ALDP-9826CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T G23401T A23403G C23481T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526600 MT956724
 2020-08-09 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1114/2020
 ATTAAAGGTT1- C241T C3037T T14382C C14408T C19102T T22843C A23403G C25452T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_528443
 2020-08-09 2020-09-07
 Ireland hCoV-19/Ireland/72IRL07419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3045T A10323G C14408T T15507C C18877T C22444T A23403G G25563T C26735T C28854T G29239A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528444
 2020-08-09 2020-09-07
 Ireland hCoV-19/Ireland/72IRL07430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3045T G9251T A10323G C14408T T15507C C18877T C22444T A23403G G25563T C26735T C28854T G29239A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528445
 2020-08-09 2020-09-07
 Ireland hCoV-19/Ireland/72IRL07432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C958T C3037T C3045T A10323G C14408T T15507C A18459G C18877T C22444T A23403G G25563T C26735T C28854T G29239A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529543
 2020-08-09 2020-09-10
 United Kingdom hCoV-19/England/ALDP-980B77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T A23403G C23525T A28169G G28655T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529544
 2020-08-09 2020-09-10
 United Kingdom hCoV-19/England/ALDP-980F02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529545
 2020-08-09 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9813C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T G8102A C14408T A23403G C25096T G28314T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529547
 2020-08-09 2020-09-10
 United Kingdom hCoV-19/England/ALDP-981CA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529548
 2020-08-09 2020-09-10
 United Kingdom hCoV-19/England/ALDP-981E7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529549
 2020-08-09 2020-09-10
 United Kingdom hCoV-19/England/ALDP-981FA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21597T C21637T G23401T A23403G C23481T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529550
 2020-08-09 2020-09-10
 United Kingdom hCoV-19/England/ALDP-982674/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22323T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529552
 2020-08-09 2020-09-10
 United Kingdom hCoV-19/England/ALDP-982AB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530136 MT997214
 2020-08-09 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2779/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T T3769A A9204G G11291A C11747T C11941T C14408T G16301A T18513C T22054C A23403G T24499C C25066T G25563T C27297T C27752T C27964T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_531673
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C64T C241T C1594T C3037T T4640C C5512T C6195T A6625G C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25305A G25563T G25565A T27342C G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531690
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-963002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531755
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96372B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C304Y C506Y A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531806
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C6573T C7051T C7303T C8964T G11083T C11379T C14408T T17142C G18105T C18657Y A23403G G25314T GGG28881AAC C29296T C29370T C29659T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532293
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95E592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T G25793K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532296
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95E9E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532298
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EB54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C14571T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532301
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F1D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T A18146T G19542T C19718T C21855T C22388T A23403G C26060T C26176T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532303
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EA93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T17565C T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532311
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95E8F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T G2210A C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532317
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95E86C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T T26511C GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532320
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EAB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T A3249G G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532326
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EAA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T C7923S T10453C C11195T C14408T A23403G A25235T T25686Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532328
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95F027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3264T T5507A C14408T G15438T C18788T G19648T A20268G C20719T T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532330
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E94B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C18981Y A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532337
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EB27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C11758T C14408T C15738T T19839C C21646T A23003G A23403G A24205T G28083T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532338
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95E705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1678C C3037T C5055T T7153C G11851T C14408T C14786T G20477T A23403G G24812T C26895T GGG28881AAC C29197T G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532342
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95EA39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T T13450W G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28849Y GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532349
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95E90F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C25282T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532354
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E8D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C6114T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532360
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EB36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C14571Y C15738T T17565Y T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532364
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95E8C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4249C G5554T C14408T G19891T C21575T C22938A A23403G C24034T G25249T G26152T C27532T G28321T GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532367
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EA66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24372T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532372
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532381
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95E9A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T T28705C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532388
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95EA1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C25282T G25302T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532397
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95E9D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25244T G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532401
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EAEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532402
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95EA57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C25282T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532407
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EADF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13812K C14408T A23403G G25617T GGG28881AAC C28893Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532440
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95E8A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C25282T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532454
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95E653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G529K A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T T26511C GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532462
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E8E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532471
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E83F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T G4504T C7735T C8318A C10615T C14408T G18859T G21624T A23403G C26571A G28658A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532481
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95E84E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C5849T C6395T G11743C G11745A T12045C A12410G C14408T C17125T A18366G C18788T T19839C T21093C A23403G C25703T G26109T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532482
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95E9F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G G28090T C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532484
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95E8B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C25282T C26060T G27754T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532488
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E91E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532493
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95E88A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532498
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EB45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532510
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95EA2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C25282T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532512
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95E85D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T T26511C GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532514
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-95EA0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532520
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EB81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532537
 2020-08-09 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-95EB63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6628T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534230
 2020-08-09 2020-09-11
 Sweden hCoV-19/Sweden/20-08947/2020/P1
 C241T C1218T C2416T C3037T C14408T C15240T T21896C A23403G C24865T G25444T G28747T GGG28881AAC G29715T

EPI_ISL_534412
 2020-08-09 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E35C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534418
 2020-08-09 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C21638Y C22388T A23403G C26060T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536963
 2020-08-09 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E3A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C14408T T20653C C21637T A23403G G24368T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539620
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2325T C3037T G4354A C6573T A12547T C14408T AA21550CT A23403G C25528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539621
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2325T C3037T G4354A C6573T A12547T C14408T AA21550CT A23403G C25528T G28079T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539622
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2325T C3037T G4354A C6573T A7857G A12547T C14408T AA21550CT A23403G C25528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539623
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2325T C3037T G4354A C6573T C7267T A12547T C14408T AA21550CT A23403G C25528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539624
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2325T C3037T G4354A C6573T A12547T C14408T A21551T A23403G C25528T G28079T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539625
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2325T C3037T G4354A C6573T A12547T C14408T G16377A G20002T AA21550CT A23403G C25528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539630
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6026T C6573T C14408T AA21550CT A23403G C25528T C25549T C27213T C28528T C28603T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539643
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C981T C3037T G3774A G4354A C6573T C14408T G18826A AA21550CT A23403G C25528T C25693T A27711G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539644
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2325T C3037T G4354A C6573T A12547T C14408T G16377A T18087C A23403G C25528T GGG28881AAC T29710A CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539648
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4039T G4354A C4780T C6573T C14408T A23403G C25528T C27944T T28705C GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539679
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1594T C2325T C3037T G4354A C6573T C9967T A12547T C14408T A23403G C25528T GGG28881AAC C29108T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539711
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C1572T C3037T A4372G C5467T C5700A C9693T A10323G C14408T C16626T G19947T A23403G C27393T A27662G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539720
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G185A C241T C313T C3037T A4372G C5700A C8605T C9693T C10747T C14408T C16626T C17304T G19947T C20091T AA21550CT A23403G C28214T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539724
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C8357T C9693T C10815T C14408T C16626T C19170T A21550C A23403G C24133T GGG28881AAC G29474T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539745
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T369C C3037T C4084T G4354A C6573T G12067T C14408T C15240T C19881T G21004T AA21550CT C22480T A23403G C25528T GGG28881AAC C29171T G29315C A29704C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539775
 2020-08-09 2020-09-19
 India hCoV-19/India/TG-CCMB-R325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A4372G G5411A C5700A C9693T C14408T C16626T G19947T AA21550CT A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_540587
 2020-08-09 2020-09-21
 United Kingdom hCoV-19/England/LIVE-AA949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1743A C3037T C3486T T9205C C14408T C16887T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541210
 2020-08-09 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C875T C3037T C6606T C12294T C14408T T22843C A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_547680
 2020-08-09 2020-09-24
 United States hCoV-19/USA/WI-GMF-14557/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T C29774T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547683
 2020-08-09 2020-09-24
 United States hCoV-19/USA/WI-GMF-M00027/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T T1592C C2416T C3037T C6113T C14408T T16530A G21372T A23403G C24387Y C25509Y G25563T C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547687
 2020-08-09 2020-09-24
 United States hCoV-19/USA/WI-GMF-14724/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T T1592C C2416T C3037T C6113T C14408T T16530A C19170T G21372T A23403G G25563T C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548595
 2020-08-09 2020-09-26
 United States hCoV-19/USA/CA-CZB-4032/2020
 AT1- C241T A2251G C3037T G13459T G14055T C14408T C15738T A20268G T20367C C20759T G21746C A23403G T24076C T27422C G28079T C28854T G29414T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_548677
 2020-08-09 2020-09-26
 United States hCoV-19/USA/CA-CZB-4080/2020
 ATTAAAGGTT1- G216S T232Y C241T C3037T C12525T C14408T A20268G A23403G A26915G T28339C C28854T C28890T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_549043
 2020-08-09 2020-09-28
 Norway hCoV-19/Norway/3142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549044
 2020-08-09 2020-09-28
 Norway hCoV-19/Norway/3143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549045
 2020-08-09 2020-09-28
 Norway hCoV-19/Norway/3145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549047
 2020-08-09 2020-09-28
 Norway hCoV-19/Norway/3180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552463
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982A5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T403C C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552468
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982A78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552516
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982A3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G7846A G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552526
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982A4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552530
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982A96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T403C C1150T A2576T C3037T C5175T C6401T C6723Y C14408T A23403G C25096T G25459K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552540
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982B93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552590
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982A87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C12099Y C14408T C19938T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552595
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9829A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552596
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-98154B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552617
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982C18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T C8299T C8502T C11020T G11083K C11095T A12410G T13180C C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552629
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9829B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C5907T C13247T C14408T C14937T T18144C C21365T A23403G C25603T C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552639
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982A2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C7231T C14408T C21575T C21637T A23403G C23525T A28169G G28655T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552642
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G C28000T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552644
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982AC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C679A C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T C25413T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552646
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982AF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2270G C3037T G11230T C14408T A23403G C23525Y T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552655
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982C54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T A6659G A11782G G12191T C13261T C13517T C14408T T16479C G21624C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552669
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982B84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8650T C14408T G20477T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552681
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G C28000T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552712
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982BEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G G22335T A23403G C25889T G27217A C27476T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552713
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-98297B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7843T C14408T T23287C A23403G C23439T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552721
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-981C46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552728
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-981D07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552731
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-981CFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2130R C2416T C3037T T6890C G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552735
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-981E22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552742
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-981C0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C10369T G10523C C14177T C14408T G18674A A23403G C25553T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552746
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-981CDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10188T C14408T A23403G G25617T G25906T G26314A A27006M C28708T GGG28881AAC C29025T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552774
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-981E40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552780
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-981C73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C2110T C3037T C14408T A23403G C25452T C25553T A28043T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552782
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-981B94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T A9210R C10369T C14177T C14408T G18674A C22295Y A23403G C25553T A28390G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552785
 2020-08-09 2020-09-28
 United Kingdom hCoV-19/England/ALDP-981D8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560981
 2020-08-09 2020-09-30
 Sweden hCoV-19/Sweden/20-08946/2020
 C241T T2300C C2416T C3037T C14408T G16647T C21575T A23403G G25563T C25904T C28869T C29550T

EPI_ISL_562903
 2020-08-09 2020-09-30
 Australia hCoV-19/Australia/VIC10403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563675
 2020-08-09 2020-09-30
 Australia hCoV-19/Australia/VIC13327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C8541T C14408T G15594T G16647T C18555T C21636T C21772Y G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_564668
 2020-08-09 2020-09-30
 Australia hCoV-19/Australia/VIC7803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T A17611R C17850T C18555T C19602Y G20709K G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564679
 2020-08-09 2020-09-30
 Australia hCoV-19/Australia/VIC7821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564726
 2020-08-09 2020-09-30
 Australia hCoV-19/Australia/VIC7884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28698Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564727
 2020-08-09 2020-09-30
 Australia hCoV-19/Australia/VIC7885/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3860T T7540C C14408T C15352T G16647T C18555T C21812T G22992A G23401A A23403G G24992C A26162G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_565395
 2020-08-09 2020-09-30
 Australia hCoV-19/Australia/VIC9115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565403
 2020-08-09 2020-09-30
 Australia hCoV-19/Australia/VIC9133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T A1163T C3037T C4965T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T24256C C25521T T26311C C28253T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565404
 2020-08-09 2020-09-30
 Australia hCoV-19/Australia/VIC9134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T G558K C683Y A1163T G2036K C2106T G2247K G2250K C2455Y G2604K C3037T G3564K G4505K G5924K G7038K T7540C G8550K G8790K G11535K C11824Y G12795K G14277K C14362Y C14408T T15576Y G15769K G16647T G16787K G17096K G17849K C18555T G19006K G19009K G19086K G22899K G22992A G23401A A23403G G24557K G24933K C25521T G28079K C28253T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565409
 2020-08-09 2020-09-30
 Australia hCoV-19/Australia/VIC9142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_565745
 2020-08-09 2020-09-30
 Australia hCoV-19/Australia/VIC9860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G13471A C14408T G16647T C18555T G22992A G23401A A23403G C28313T C28849T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_569032
 2020-08-09 2020-10-02
 France hCoV-19/France/IHU-0986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T G18546T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MW023471
 2020-08-09 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C875T C3037T C6606T C12294T C14408T T22843C A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_514454
 2020-08-10 2020-08-17
 United Kingdom hCoV-19/England/NOTT-112EF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8650T C14408T G20477T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516813
 2020-08-10 2020-08-24
 Singapore hCoV-19/Singapore/813/2020
 ATTA1- G419T C2245T C2434T C6310A C6312A T8731C G11083T C13730T C19524T C20468T C23929T C25511T C28311T AAAAAAAAAAAA29892-

EPI_ISL_516814
 2020-08-10 2020-08-24
 Singapore hCoV-19/Singapore/814/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C2245T C6310A C6312A T8731C G11083T C13730T C17802A C19524T C20468T C23929T C25511T C28311T AAAAAAAAAAAA29892-

EPI_ISL_516829
 2020-08-10 2020-08-24
 Indonesia hCoV-19/Indonesia/YO-781481/2020
 C241T C3037T T3529C C4754T C14292T C14408T C14694T G15406T G17964T C18877T A23403G C25553T G25563T G25687T C26735T T28735C A28752G AAA29901-

EPI_ISL_517576
 2020-08-10 2020-08-24
 United Kingdom hCoV-19/England/SHEF-D16F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517581
 2020-08-10 2020-08-24
 United Kingdom hCoV-19/Scotland/CVR3965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517582
 2020-08-10 2020-08-24
 United Kingdom hCoV-19/Scotland/CVR3966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8296C C12076T C14408T C18877T G19846A C22227T G22332T A23403G G25563T G28690T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517600
 2020-08-10 2020-08-24
 United Kingdom hCoV-19/Wales/PHWC-169BB8/2020
 ATTAAAGGTTTA1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_523747
 2020-08-10 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T A2480G C3037T T4640C C5512T C6195T C8645T C9246T C11109T C11173T C12415T C14408T C17750T G17790T T19159G A23403G G24821T G25563T G25565A T27342C G28655T G29593T G29781T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523749
 2020-08-10 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523751
 2020-08-10 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4579A T4640C C5512T T5928C C6195T C9246T C9344T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523752
 2020-08-10 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C C27643T G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523753
 2020-08-10 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C11139T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523755
 2020-08-10 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C8326T C14408T G17259T G19480A G21193T C21846T A23403G G27827T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523757
 2020-08-10 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3177T C4002T C6723T C9319T G10097A C13536T C13862T C14408T T14551C C16762T A23403G C23731T C25006T GGG28881AAC G29449T G29734T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523758
 2020-08-10 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T T1918C C3037T T4640C C5512T C6195T C7119T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25049T G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523759
 2020-08-10 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4568G G9130T C14408T C16111T G18907T C19813T A23403G T27319C G27593T G28487A C28868T GGG28881AAC G29706T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523868 LR880584
 2020-08-10 2020-08-27
 Switzerland 240017
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C815T G3002R T3005K A3019R C3037T A3076R C3093Y C6286T C7029Y C14408T G21255C C22227T A23403G C26801G C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523869 LR880591
 2020-08-10 2020-08-27
 Switzerland 240018
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C A2905W C3037T T3561Y T3574Y C5170T C6286T G7756T C7772T G10300T G11132T C14408T G21255C C22227T A23403G C26801G C27005T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523871 LR880581
 2020-08-10 2020-08-27
 Switzerland 240020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T T3144K C5170T C6286T G7756T C7772T G10300T G11132T C14408T A16210W G21255C C22227T A23403G C26801G C27005T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523872 LR880592
 2020-08-10 2020-08-27
 Switzerland 240021
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1722T C3037T C8660Y G10265A C14408T C15720T A15972G A16210W G16330R T16368W C17550Y C19718T A23403G T28759Y GGG28881AAC G29474T C29614T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523873 LR880589
 2020-08-10 2020-08-27
 Switzerland 240022
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T2926Y C3037T C3042M C3373A T6984K C7119T G10642T C11195T C14408T A16210W C19152T C20148T A23403G GGG28881AAC C29625T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523874 LR880582
 2020-08-10 2020-08-27
 Switzerland 240023
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C2925Y C3037T C6286T T7028Y C14408T G21255C C22227T A23403G C26801G C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523875 LR880595
 2020-08-10 2020-08-27
 Switzerland 240025
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T T3144K T6976K G8371T C9430T C9803T C9962Y T9987Y C10052Y C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A G29425T A29707R C29750T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523876 LR880594
 2020-08-10 2020-08-27
 Switzerland 240028
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2062Y C2416T C2942M T2968K T2974K T3012K T3016K T3024K T3026K T3035K C3037T T3144K T6980W G8371T C9430T C9803T A9873R C14408T A15477T A16210W C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A G29425T C29750T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523879 LR880602
 2020-08-10 2020-08-27
 Switzerland 240033
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2570T C3037T A3959R C6578T G10631A C12559T C14408T C15324T G16900A C18681T C19819Y A23403G C27765T C28893T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523910 LR880618
 2020-08-10 2020-08-27
 Switzerland 240072
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5230T G6981S T7018W G7027R T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C22879A A23403G T24910C T26972C C27800M G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523911 LR880616
 2020-08-10 2020-08-27
 Switzerland 240073
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G11842A A12759G C14408T G18292T A20268G A23403G C26735T C28854T G29384T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523915 LR880642
 2020-08-10 2020-08-27
 Switzerland 240077
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C2416T A2905W G2914R C3037T A3082R C3131Y T6890C G8371T C9430T C14408T A15477T C18395T AGA20622TTT G20991T A23403G C23730T G25563T A26319G C28854T G29044A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523916 LR880639
 2020-08-10 2020-08-27
 Switzerland 240078
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T T6890C G8371T C9430T C14408T A15477T C18395T AGA20622TTT G20991T A23403G C23730T G25563T A26319G C28854T G29044A C29784Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_526520
 2020-08-10 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB7184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T A20960G C22388T A23403G G23948T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526522
 2020-08-10 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB7186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C24023T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526602 MT956726
 2020-08-10 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1116/2020
 ATTAAAG1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C24381T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_526603 MT956727
 2020-08-10 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A9419G C14408T G17632T T18006G C18486T A20268G T22162C A23403G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_528446
 2020-08-10 2020-09-07
 Ireland hCoV-19/Ireland/72IRL07454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3045T A10323G C14408T T15507C C18877T C22444T A23403G G25563T C26735T C28854T G29239A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528447
 2020-08-10 2020-09-07
 Ireland hCoV-19/Ireland/72IRL07564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528452
 2020-08-10 2020-09-07
 Ireland hCoV-19/Ireland/72IRL08037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529551
 2020-08-10 2020-09-10
 United Kingdom hCoV-19/England/ALDP-9827EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530137
 2020-08-10 2020-09-10
 United States hCoV-19/USA/WA-S2780/2020
 ATTAAAGGTTTATA1- C241T G271T C3037T C4898T C14408T C18486T A20268G T22162C A23403G A26319T G27870T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_530138
 2020-08-10 2020-09-10
 United States hCoV-19/USA/WA-S2781/2020
 ATTAAAGGTTTAT1- C241T G271T C3037T C4898T C14408T C18486T A20268G T22162C A23403G G27870T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_530139 MT997236
 2020-08-10 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2782/2020
 ATTAAAGGTTTATAC1- C241T C313T C3037T T6496C T8716C C14408T G19117T C22477T A23403G C23929T G28851T GGG28881AAC C29545A AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_530140
 2020-08-10 2020-09-10
 United States hCoV-19/USA/WA-S2783/2020
 ATTAAAGGTTTATACCT1- C241T G271T C3037T C4898T C14408T C18486T A20268G T22162C A23403G G27870T C28854T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_530818
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A01A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C4227Y C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530819
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11563T C14408T A23403G G25617T G28376A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530915
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T C17440T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530954
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969A0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T C22388T A23403G C24844A C26464T C26942T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531060
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964B2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531479
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963A13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4927T C5183T A8072G C14408T C21191T G22225A A23403G G25166C G25555T C28253Y GGGGAACTT28881- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531490
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T C26022T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531491
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A C11124T C12138T C14408T G14792T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531496
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963AAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531499
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963A5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T C14408T A15984T C20946T C22075T A23403G C27945T GGG28881AAC G29648T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531503
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9628DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T C14408T G14866A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531512
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10440T T12145G C14408T C20759T C21676T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531515
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9639F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC C29784T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531516
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963D47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C13887T C14408T C21639T A23403G C23731T GGG28881AAC C29386A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531531
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963B2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531535
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5142T C14408T A16682G T18228C C18877T A23403G A25897G C28332T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531538
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G17019T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531541
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963CB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531552
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9628B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A749G C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531557
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9639BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C24034T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531560
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9628CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10440T T12145G C14408T C20759T C21676T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531568
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9639DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21255C C22227T G22484T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531576
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A6BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11563T C14408T A23403G G25617T G28376A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531581
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9635B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T C6016T T10453C C11195T C14408T G18090T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531582
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962F60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27804Y C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531586
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9638FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G7846A G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531587
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9621A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A19126R A23403G G25617T G27777K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531592
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9632C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T C11674T G12067T C13667T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531593
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962ECD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531595
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-961FF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T C15720T G21255C C22227T A23403G T26609C C26801G T28062C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531596
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13281Y C14408T C19951T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531597
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9622B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531598
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-963907/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531599
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-961FAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C24034T G25606T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531600
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9625B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T T21570G C21575T A23403G T25473C C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531601
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9623BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T G11521T C14178Y C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531605
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531606
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T T2454C C3037T G3483T C7224Y G10097A C10369T T10992C C11001T C14408T T19755C A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531607
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-962FE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C24096Y C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531612
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9625D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C9170T C14408T C18877T C20235T G21867T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531613
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-962FF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3164C T7258C T8941C G12911A C12919T C14408T G15438T A20268G A23403G C29485T G29715T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531614
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9634F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T A6659G G12191T C13261T C14408T T16479C A23403G G25996K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531616
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9632A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T C11020T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531619
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9626B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G C28000T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531621
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96271D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T T21570G C21575T A23403G T25473C C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531623
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962D0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G410K T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531624
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96208B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531627
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96220D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531630
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-9635A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C3874Y C14408T C14688Y C14790Y C15963T G21624T A23403G C26013G G27877T A28523G GGG28881AAC C29311Y C29754Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531631
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-961FDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531632
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T G2183A T2743G C3037T A9433T T9668C G10265A C14408T C14724T G17370T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531639
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-962276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C7081T G14202T C14408T G19542T C19718T C22388T A23403G C25282T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531642
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9635F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531644
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-962258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531645
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-961F52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531647
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9633AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531650
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96358B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T T16401C G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531652
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96209A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T A2015G C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531654
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-961FCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G A27277R C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531656
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9624DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5434C C14408T G16397T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531660
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-965AE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531661
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-962319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531664
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962A23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1185T C1450T T2124C C3037T C4002T G10097A C13536T C13743T C14408T C15738T C16393T G23236T A23403G C23731T G25720T G26065T GGG28881AAC -29682TAATC A29687W CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531666
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962CD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2100T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531671
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962AC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T T1543C C3037T C13665T C14408T C15960T T16401C G16741T A17493G G20580T A23403G C26464T C28253Y GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531675
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96211F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531676
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G G22335T A23403G C25889T G27217A GGG28881AAC C29451T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531679
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962A14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A21659G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531680
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9621E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G G25563T C26735T T26876C C28311T G28774T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531682
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96299F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C9430T C14408T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531683
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962CA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531692
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9625E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3369A G4105T C4391A C11124T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531697
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96364C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531698
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531699
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96270E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C5907T C13247T C14408T C14937T T18144C A23403G C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531700
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-962373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531702
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-962003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531705
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962F7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531709
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531710
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9635C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531711
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96222B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531712
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96221C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T G18027K C18877T G22992A A23403G G25563T C25710T C26735T T26876C C28115T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531715
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9624F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3369A G4105T C4391A C11124T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531716
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531718
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531719
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96274A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T C26022T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531720
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1168G C2416T C3037T C3096Y G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531722
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962AE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1170T C1185T C1450T T2124C C3037T C4002T G10097A C13536T C13743T C14408T C15738T C16393T G23236T A23403G C23731T G25720T G26065T GGG28881AAC -29682TAATC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531723
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96206D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C T8156Y C11758Y C14408T C15738T T19839C C21646T A23003G A23403G A24205T G28083T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531724
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9624E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11563T C14408T A23403G G25617T G28376A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531732
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-961F61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3206T T3256C C5622T G14202T C14408T A18146T G19542T C19718T C21855T C22388T A23403G C26060T C26176T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531739
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T C12513T C14408T G14866A A23403G A28104T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531743
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96357C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T T26511C GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531744
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9637FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3339C T5507A C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531750
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5434C C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531751
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9620F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531754
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9636E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531756
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96370D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531757
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9636F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T T9861Y G10281A G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531758
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-961FBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T T13450W G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27676R C28849Y GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531759
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96373A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G G27147K C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531760
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9628FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G C28000T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531761
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-962249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C2933A C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531762
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9638EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3486A C3653T C14408T A23403G C25624T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531764
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962C5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T T16401C G16741T C17410T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531766
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96365B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531767
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9622D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531769
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-962267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T A3249G G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531771
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962FAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531772
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9632FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4297G A4762G A5040G C14408T C15019T C16466Y T19557C C21638T C22120T A23403G C23638T GGG28881AAC C29028T C29358T G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531774
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962F51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531776
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-963679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531777
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9636A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T277C C3037T C5055T G11083K G11851T C14408T C14786Y A23403G G24812T C26833Y C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531778
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963882/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531780
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T T2454C C3037T G3483T A9935G G10097A C10369T T10992C C11001T C14408T G22344A A23403G C23731T C25714T G28580T GGG28881AAC C29177T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531781
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T C26022T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531782
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C5339T C14408T A20268G A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531783
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96272C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T C26022T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531786
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531787
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1392T C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531791
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-962030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C11758T C14408T C15738T T19839C C21646T A23003G A23403G A24205T G28083T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531793
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9635D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T A6659G G12191T C13261T C14408T T16479C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531794
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9621C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531795
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-962434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T A10075R T10453C C11195T C14408T A23403G A25235T C26801Y GGG28881AAC G29751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531798
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962A8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T G9463A C10626T C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC A29407G T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531799
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-961F43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531800
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9621F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531803
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-962197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531807
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96215B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531808
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-962337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531810
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962D1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G18907K G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531814
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-962CF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531816
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9633EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4138G T5158C C5812T C6016T C8146T G10097A C13887T C14408T C21639T A23403G C23731T GGG28881AAC C29386A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531824
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-962328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C10755T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531825
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3369A G4105T C4391A C11124T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531827
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9621B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C13115Y C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531831
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96356D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T15003Y T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531833
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96263E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T T11440C C14408T C17639T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531836
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96248F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531837
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962EAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C9170T C14408T C18877T G21867T C22444T A23403G G25563T C26456T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531840
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96204F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531841
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531843
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-962285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T A3249G G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531844
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9635E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G11083T T14100C C14408T A20268G C21614T A23403G CA28846TG C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531845
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9620E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531846
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9623DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531848
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-962443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C5100T G6127A C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531849
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531852
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962F8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G20134T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531853
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T T9358C C11152T C14408T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531854
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531856
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-961F9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C25282T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531857
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-961F34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C6401T G13004A G14202T C14408T A18146T G19542T C19718T C21855T C22388T A23403G C26060T C26176T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531859
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962A41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G18907T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531860
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96273B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T C12513T C14408T G14866A A23403G C25413Y A28104T GGG28881AAC G29465T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531861
 2020-08-10 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962D2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534201
 2020-08-10 2020-09-11
 Latvia hCoV-19/Latvia/112/2020/P1
 C241T T2537G C3037T C6573T G12191T C14408T C14937T T16479C A23403G GGG28881AAC

EPI_ISL_534254
 2020-08-10 2020-09-11
 Sweden hCoV-19/Sweden/20-52567/2020/P1
 C241T C2721T C3037T C5826T T6334C C6606T T8063G C10818T C13011T C14408T G22992A A23403G C24378T G26158T T26966C

EPI_ISL_534255
 2020-08-10 2020-09-11
 Sweden hCoV-19/Sweden/20-52568/2020/P1
 C241T C2721T C3037T C5826T T6334C C6606T T8063G C10818T C13011T C14408T G22335T G22992A A23403G C24378T G26158T T26966C

EPI_ISL_534408
 2020-08-10 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E32F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8296C C12076T C14408T C18877T G19846A C22227T G22332T A23403G G25563T G28690T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534410
 2020-08-10 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C25282T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534413
 2020-08-10 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534414
 2020-08-10 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534415
 2020-08-10 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E19E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T T26511C GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534420
 2020-08-10 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E1AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T T26511C GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534423
 2020-08-10 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C25282T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534425
 2020-08-10 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E27D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C15960Y G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534427
 2020-08-10 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E1DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8296C C12076T C14408T C18877T G19846A C22227T G22332T A23403G G25563T G28690T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534428
 2020-08-10 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E4FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534429
 2020-08-10 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E4C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14322T C14408T G19542T C19718T C22388T C22687T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534430
 2020-08-10 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E3F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8296C C12076T C14408T C18877T G19846A C22227T G22332T A23403G G25563T G28690T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534434
 2020-08-10 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E26E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534435
 2020-08-10 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E4A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8296C C12076T C14408T C18877T G19846A C22227T G22332T A23403G G25563T G28690T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534438
 2020-08-10 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-95E310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8296C C12076T C14408T C18877T G19846A C22227T G22332T A23403G G25563T G28690T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536579 MW035377
 2020-08-10 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T C11956T C12025T C14408T T19839C A23403G C23707T G25273T G25606T GGG28881AAC T29192C C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536580 MW035378
 2020-08-10 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3738T G8083A C10319T C14408T C14805T A18424G C21304T T22682C A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536837
 2020-08-10 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9646C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536862
 2020-08-10 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96465A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536913
 2020-08-10 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T G2183A T2743G C3037T A9433T T9668C G10265A C14408T C14724T G17370T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536914
 2020-08-10 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96470C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8047T A9433T G10265A C14408T G15380T C19593T A19650G A23403G G23621T C25487T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536927
 2020-08-10 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96439F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T C27739T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536943
 2020-08-10 2020-09-16
 United Kingdom hCoV-19/England/QEUH-963AF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C11379T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537004
 2020-08-10 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E3C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537005
 2020-08-10 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E3E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537011
 2020-08-10 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G C28000T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537014
 2020-08-10 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E41D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T T2454C C3037T G3483T G10097A C10369T T10992C C11001T C14408T T19755C A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537048
 2020-08-10 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E4D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5000T C9430T G10540T T11737C C12823T T14289A C14408T A16920C A23403G C27092T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537071
 2020-08-10 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E4E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537098
 2020-08-10 2020-09-16
 United Kingdom hCoV-19/England/QEUH-95E538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T C14408T GC19184CA A23403G C23731T A25256M C25714T C26212T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539616
 2020-08-10 2020-09-19
 India hCoV-19/India/TG-CCMB-AA147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2325T C3037T G4354A C6573T A12547T C14408T A23403G C25528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539645
 2020-08-10 2020-09-19
 India hCoV-19/India/TG-CCMB-AA227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3774A G4354A C6573T C9039T C14408T C17913T AA21550CT A23403G C25528T C25693T GGG28881AAC G29744T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539651
 2020-08-10 2020-09-19
 India hCoV-19/India/TG-CCMB-AA226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3774A G4354A C6573T C9039T C14408T C17913T AA21550CT A23403G C25528T C25693T GGG28881AAC G29744T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539667
 2020-08-10 2020-09-19
 India hCoV-19/India/TG-CCMB-AA01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8917T G9389A C14408T G21974T A23403G G25855C GGG28881AAC G28899T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539668
 2020-08-10 2020-09-19
 India hCoV-19/India/TG-CCMB-AA33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8917T G9389A C14408T G21974T A23403G C25613T G25855C C28698T GGG28881AAC G28899T C29836T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539677
 2020-08-10 2020-09-19
 India hCoV-19/India/TG-CCMB-AA102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6402T C6573T C9603T C10029T C14408T G16153A G20069A A23403G G23587T A24780C C25528T C27416T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539680
 2020-08-10 2020-09-19
 India hCoV-19/India/TG-CCMB-AA19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3774A G4354A C6573T C7390T C14408T T21835C A23403G C25528T C25693T G25955T G26951T C27972T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539683
 2020-08-10 2020-09-19
 India hCoV-19/India/TG-CCMB-AA105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G124A C241T C313T C3037T C5700A G6476T C9693T C10815T C14408T C16626T C19018T C22227T A23403G C25587G GGG28881AAC G29474T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539684
 2020-08-10 2020-09-19
 India hCoV-19/India/TG-CCMB-AA28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G124A C241T C313T C3037T C5700A G6476T C9693T C10815T C14408T C16626T C19018T C22227T A23403G C25587G GGG28881AAC G29474T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539712
 2020-08-10 2020-09-19
 India hCoV-19/India/TG-CCMB-AA222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T G3871T A4372G C5700A C9693T C14408T C16626T C21846T A23403G C23644T C25671T G26262T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539739
 2020-08-10 2020-09-19
 India hCoV-19/India/TG-CCMB-AA41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2836T C3037T C9042T C14408T C18877T G19962T C21575T C22444T A23403G G25537A G25563T C26735T G27777T C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539758
 2020-08-10 2020-09-19
 India hCoV-19/India/TG-CCMB-AA42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T G3871T A4372G C5700A C9693T C14408T C16626T A23403G G26262T GGG28881AAC G29090T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_540559
 2020-08-10 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T C29274T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540560
 2020-08-10 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G G25455T A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540565
 2020-08-10 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540566
 2020-08-10 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G T27922C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541707
 2020-08-10 2020-09-23
 India hCoV-19/India/MH-NIV-157478/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C207T C241T C313T C1121T C3037T T5137C C5700A A6276G C7764T C13050T C14408T C14937T A23403G CA28253TC GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_547438
 2020-08-10 2020-09-24
 United Kingdom hCoV-19/Gibraltar/203360722/2020
 ATTAAAGGTTT1- C241T C3037T G3838A C5055T C11681T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_547681
 2020-08-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-14585/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T C4686T G8314A A10323G G11083T C14408T T15276A AA21550MW A23403G A25381M G25563T C28253T G28842T G29179T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547682
 2020-08-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-14586/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C3768A T9721C C12025T C14408T C19164T T19839C C19955T G21220T A23403G C23707T G25906T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547685
 2020-08-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-14621/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C715T C1059T G2036T C3037T C4686T C11916T C14408T G23311T A23403G A23586G G25563T C26204T G27948C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548258
 2020-08-10 2020-09-25
 Sweden hCoV-19/Sweden/20-52650/2020
 C241T GGTCTT1598- C3037T T4924C C6636T A13500G C14408T C16887T A17755G G18756T A23403G GGG28881AAC

EPI_ISL_548606
 2020-08-10 2020-09-26
 United States hCoV-19/USA/CA-CZB-4033/2020
 AT1- C241T C3037T C9615T A10829G G13812T C13959T C14408T A20268G C21691T C22523S A23403G C26029A C27297T C28854T C29281T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548609
 2020-08-10 2020-09-26
 United States hCoV-19/USA/CA-CZB-4087/2020
 C241T C3037T C11620T C14408T T15385C C16111Y C16386T T21570G C21575T C22388T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_548623
 2020-08-10 2020-09-26
 United States hCoV-19/USA/CA-CZB-4086/2020
 C241T C3037T C11620T C13426T C14408T T15385C C16386T T21570G C21575T C22388T A23403G T26978W GGG28881AAC C29347T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_548645
 2020-08-10 2020-09-26
 United States hCoV-19/USA/CA-CZB-4037/2020
 ATTAAAGGTTTA1- C123Y C241T A2251G C3037T C6336T C9491T G13459T G14055T C14408T C15738T A20268G T20367C C20759T G21746C A23403G T24076C C28854T G29414T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_549083
 2020-08-10 2020-09-28
 Norway hCoV-19/Norway/3068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C6017A C12068T C14408T A20268G C21058T A23403G C25886T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549084
 2020-08-10 2020-09-28
 Norway hCoV-19/Norway/3069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3784T G8083T C12053T C13011T C14408T C14757T G15327T C18788T A23403G G25088T G26501A GGGG28881AACA CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549125
 2020-08-10 2020-09-28
 Norway hCoV-19/Norway/3101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C2113T C3037T A3120C A3472G A6798T C7765T G11521T G11527T C14408T G17523T C17690T C18877T A23403G G25563T C27509T A28959G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552446
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G C23657G C25919Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552449
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9829C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552464
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982C09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5571C C14408T G15451A A23403G GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552466
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-98293F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552473
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982D7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552486
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982DAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T T1771A C1912T C3037T G4105T G4180T T10453C C11195T C14408T T16993C C21727T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552488
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-98286F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21557Y C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552507
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9829F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552512
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G17658T G18149T G19254T T19893C A23403G C25889T C28807T GGG28881AAC G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552515
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9828E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18788T G19648T A20268G T21158C A23403G G27703T C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552523
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552527
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9828C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G17658T G18149T G19254T T19893C A23403G C25889T C28807T GGG28881AAC G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552533
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982A1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G T25139C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552539
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982B39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552556
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552565
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982A0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552574
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982CDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552579
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982B75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G T25139C T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552580
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982CFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24023T C25521Y C28253Y GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552583
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982D15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884Y C3037T C5622S C14408T A23403G C24023T GGG28881AAC GC29072ST G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552591
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-98288D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T C9438T G10097A C13887T C14408T C21639T A23403G C23731T GGG28881AAC C29386A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552598
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982CBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11224T C11941T C12043T C12242T C14408T G17014T C18877T C22444T A23403G G25494T G25563T C26735T C28854T G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552608
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982B57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T C3832T A8086G A9433T TAT9858- G10265A C12919T C14408T A19650G A23403G T24499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552659
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9828D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C8809T A9848G C13199A C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552665
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-98295D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19872C A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552671
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982DBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T C5730Y T10453C C11195T C14408T G20679T A23403G T25139C T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552679
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982D51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G T25139C T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552686
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982B2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C7195T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552689
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-98296C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1427Y C3037T G4105T C4391A C11124T C14408T G14792T C15848T G19254T T19893C C21254T A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552699
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9829D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552706
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982B66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T C21660T A23403G C24700A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552707
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982D60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2501G C3037T C6395T G10565C G11804A A12410G C14408T A18366G C18788T T19839C T21093C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552724
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-981F10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C12439T C13721T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552732
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552760
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-981FB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552773
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-9820FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G G22335T A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552776
 2020-08-10 2020-09-28
 United Kingdom hCoV-19/England/ALDP-981E9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T T14313C C14408T G15652T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563269
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC11146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T4341C T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563396
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC11495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C8389T A10155G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563408
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC11546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C3602Y T7540C C12439T C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564557
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC7657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564558
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC7658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G15957R G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564680
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC7824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T T1945C C3037T G3485R T7540C C13724T C14408T G16647T C18555T G22992A G23401A A23403G C25521T C28253T T28823Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564681
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC7827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C13274T A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564719
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC7871/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C10778T G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564720
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC7874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564722
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC7877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564723
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC7880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T C21302T CG21304AA G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564724
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC7881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C G10180R C14408T G16647T C18555T C22480T G22992A G23401A A23403G C26907Y C27059T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564725
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC7883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T A21551G G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564763
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC7947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C17304T C18555T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564789
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC7984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T T7540C A13488G C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G C24897T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564896
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC8199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564897
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC8202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T19305C G22801K G22992A G23401A A23403G G26526T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564899
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC8207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564901
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC8209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G11083K C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29281Y ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564902
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC8210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C1441T C3037T C5575T C6033T T7540C T13764C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC A29406W AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564906
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC8219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564962
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC8353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C G13762A C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565754
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC9872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G28090A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565755
 2020-08-10 2020-09-30
 Australia hCoV-19/Australia/VIC9873/2020
 ATTAAA1- C241T A1163T C3037T T7540C G11083K C14408T G16647T C18555T C19386T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_566031
 2020-08-10 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T A1605G C3037T C9763A C9967T G14209T C14408T A14736G G16935T A19157R A23403G G24535T G25323T G25563T G28460C A28841G G28899T C29421T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_569151
 2020-08-10 2020-10-02
 France hCoV-19/France/IHU-1390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T C8937T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569155
 2020-08-10 2020-10-02
 France hCoV-19/France/IHU-1410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T C8937T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_569157
 2020-08-10 2020-10-02
 France hCoV-19/France/IHU-1419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1912T C3037T G5210A C14408T C15324T C17470T C21191T A23148G A23403G T27125C C28854T GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_569158
 2020-08-10 2020-10-02
 France hCoV-19/France/IHU-1420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T A3344G C4320T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569160
 2020-08-10 2020-10-02
 France hCoV-19/France/IHU-1426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T C5673T G9526T T10330C C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569161
 2020-08-10 2020-10-02
 France hCoV-19/France/IHU-1427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T394G C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29743-

EPI_ISL_569162
 2020-08-10 2020-10-02
 France hCoV-19/France/IHU-1428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569165
 2020-08-10 2020-10-02
 France hCoV-19/France/IHU-1431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569166
 2020-08-10 2020-10-02
 France hCoV-19/France/IHU-1432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAA1- C241T C2416T C3037T G8371T C9430T C13721T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_569170
 2020-08-10 2020-10-02
 France hCoV-19/France/IHU-1446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9142T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569171
 2020-08-10 2020-10-02
 France hCoV-19/France/IHU-1448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T712C A2097T T2537C C2706T C2710T C3037T C14408T G18186T A18777G G20758T A23403G C23802T T25496C T27299C C27923T GGG28881AAC T29148C G29254T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569180
 2020-08-10 2020-10-02
 France hCoV-19/France/IHU-1502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1912T C3037T C4927T G5210A C14408T C15324T C17470T C21191T A23148G A23403G T27125C C28854T C29149T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_512389
 2020-08-11 2020-08-11
 United Kingdom hCoV-19/England/PORT-2D1455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2298C C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516745
 2020-08-11 2020-08-21
 United States hCoV-19/USA/CA-CZB-3670/2020
 ATTA1- C241T T276Y C3037T C14408T G16639T A20268G C21844A A23403G T24076C C25611S C28854T G29140T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_516747
 2020-08-11 2020-08-21
 United States hCoV-19/USA/CA-CZB-3672/2020
 ATTAAA1- C241T C3037T C14408T G16639T A20268G C21844A A23403G T24076C C28854T G29140T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_516808
 2020-08-11 2020-08-24
 Singapore hCoV-19/Singapore/808/2020
 ATTAAAGGTTTATAC1- A1846C C4586T C6310A C6312A G9500A G11083T G11291A C13730T T16542C G17427T C18894T C19524T T19956C C23929T C25546T T26957C C28311T G29616T AAAAAAAAAAAA29892-

EPI_ISL_516810
 2020-08-11 2020-08-24
 Singapore hCoV-19/Singapore/810/2020
 ATTA1- C6310A C6312A G11083T C13730T G14277T A14487G C19170T A19494G C19524T C20844T G22468T C23929T C28311T A28855T AAAAAAAAAAAA29892-

EPI_ISL_516811
 2020-08-11 2020-08-24
 Singapore hCoV-19/Singapore/811/2020
 ATT1- C4456T C4754T C6310A C6312A T6691C A10069G G11083T C13730T G15006T C17518T C19524T C23185T C23929T C25308A C25603T C28311T AAAAAAAAAAAA29892-

EPI_ISL_516812
 2020-08-11 2020-08-24
 Singapore hCoV-19/Singapore/812/2020
 ATTAAAG1- A1846C C4586T C6310A C6312A G9500A G11083T G11291A C13730T T16542C G17427T C18894T C19524T T19956C C23929T C25546T T26957C C28311T G29616T C29732Y AAAAAAAAAAAA29892-

EPI_ISL_516815
 2020-08-11 2020-08-24
 Singapore hCoV-19/Singapore/815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- A1846C C4586T C6310A C6312A T8395C G9500A G11083T G11291A C13730T T16542C G17427T C18894T C19524T T19956C C23929T C25546T T26957C C28311T G29616T AAAAAAAAAAAA29892-

EPI_ISL_516816
 2020-08-11 2020-08-24
 Singapore hCoV-19/Singapore/816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G793T C1912T C2695T C6310A C6312A G11083T C13730T G18025A C19524T G20679T C23185T C23929T G26152A C27155T A27663G C28311T AAAAAAAAAAAA29892-

EPI_ISL_516817
 2020-08-11 2020-08-24
 Singapore hCoV-19/Singapore/817/2020
 ATTAAAGGTTTATACC1- A3951G C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T A23914G C23929T C28311T G29616T AAAAAAAAAAAA29892-

EPI_ISL_516819
 2020-08-11 2020-08-24
 Singapore hCoV-19/Singapore/819/2020
 ATTA1- A1846C C4586T C6310A C6312A G9500A G11083T G11291A C13730T T16542C G17427T C18894T C19524T T19956C C23929T C25546T T26957C C28311T G29616T AAAAAAAAAAAA29892-

EPI_ISL_516823
 2020-08-11 2020-08-24
 Singapore hCoV-19/Singapore/823/2020
 ATTAAAGGTTTATA1- C222T C241T C3037T C3267T C14408T C18877T C21034T C22444T T22882G A23403G G25563T G26173T C26735T G28183T T28277C C28854T G28960T AAAAAAAAAAAA29892-

EPI_ISL_516824
 2020-08-11 2020-08-24
 Singapore hCoV-19/Singapore/824/2020
 ATTAAAGGTTTATAC1- A1846C C4586T C6310A C6312A G9500A G11083T G11291A C13730T T16542C G17427T C18894T C19524T T19956C C23929T C25546T T26957C C28311T G29616T AAAAAAAAAAAA29892-

EPI_ISL_516825
 2020-08-11 2020-08-24
 Singapore hCoV-19/Singapore/825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- A3951G C6310A C6312A A8443R G9500A G11083T C13730T T16542C G17427T C18894T C19524T C19586Y C23929T C28311T G29616T AAAAAAAAAAAA29892-

EPI_ISL_516826
 2020-08-11 2020-08-24
 Singapore hCoV-19/Singapore/826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGT1- G419T C2245T C2434T C6310A C6312A A8062R T8731C G11083T C13730T C19524T C20468T C23929T C25511T C28311T AAAAAAAAAAAA29892-

EPI_ISL_517570
 2020-08-11 2020-08-24
 United Kingdom hCoV-19/England/SHEF-CF9E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C15280A C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522891 MT929111
 2020-08-11 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C19979A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522892 MT929112
 2020-08-11 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G487A C715T C1059T C3037T C4876T C11916T C14408T C18555T A23403G A23586G G25563T A27489G C28045T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522913 MT929134
 2020-08-11 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T A696C C3037T G3871T T3931C C6906T A8390G C14408T C19402T T21596C A23403G G24926T C25153T C28087T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523746
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A G26634T T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523748
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T CTAGTT11280- G12191T C14408T T16479C A23403G C25587A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523750
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T T1918C C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C A27520G G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523754
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C14676T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523756
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T C15279T G19480A A23403G GGG28881AAC T29161C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523760
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T A6659G G12191T C13261T C14408T T16479C G21157A A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523761
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523763
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2455T C3037T G3692T A4568G G9130T C14408T C16111T A23403G G24124T T27319C G28487A C28868T GGG28881AAC G29706T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523764
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T C15279T G19480A A23403G GGG28881AAC T29161C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523765
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C C21575T A23403G G25157T T27922C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523766
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1174T C1594T C3037T T4640C C5512T C6195T C8917T C9246T G11083T C11109T C12415T C14408T C16523T C17750T G17790T G18027A T19159G A23403G G25563T G25565A C26192A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523767
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTCATGTTA510- C1174T C1594T C3037T T4640C C5512T C6195T C8247T C8917T C9246T G11083T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A C26192A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523768
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523769
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C7056T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523770
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C2973T C3037T T4640C C5512T C6027A C6195T C8645T C9246T C11109T C12415T C14408T C17119A C17750T G17790T T19159G A23403G G24821T G25563T G25565A T27342C G28655T G29593T G29781T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523771
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C C27737T G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523772
 2020-08-11 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G463A C3037T G6036T G9190T G12906A C14408T C16332T C18928T C19454T A23403G G23868T C25160T C26447T C27889T A28296C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523880 LR880606
 2020-08-11 2020-08-27
 Switzerland 240037
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T G10265A C14408T C15720T A15972G C19718T A23403G G26700T T28759Y GGG28881AAC G29348T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523881 LR880599
 2020-08-11 2020-08-27
 Switzerland 240038
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T3034Y C3037T A3054M A3103R T3112Y G3564K C3611Y TT6892YY C8299Y G10265A G11083T C14408T C15720T A15972G C19718T A23403G G23608K C26461Y G26700T G28357K C28391Y G28460K T28759Y GGG28881AAC G29348T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523882 LR880607
 2020-08-11 2020-08-27
 Switzerland 240039
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G10265A G11083T C14408T C15720T A15972G C19718T C23086Y A23403G G26700T G27877K G28357T T28759Y GGG28881AAC G29348T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523883 LR880612
 2020-08-11 2020-08-27
 Switzerland 240041
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C815T C3037T C6286T C14408T A16210W C16222Y G16252S C16394Y G21255C C22227T A23403G C26801G C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_526605 MT956729
 2020-08-11 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1119/2020
 AT1- C241T C3037T T14382C C14408T C19102T T22843C A23403G C25452T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526606 MT956730
 2020-08-11 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1415T C2110T C3037T C6582T C14120T C14408T C16260T C20429T T20799C A23403G G25563T C26028T T28029C A28401G C28821A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526607 MT956731
 2020-08-11 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1121/2020
 AT1- C241T C1059T C1385T G1738T G2819T C3037T G3242A G5629T C7318T C11916T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_526608 MT956732
 2020-08-11 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1122/2020
 ATTAAAGGTTT1- C241T C3037T T11675C C14408T T22843C A23403G C25452T C26010T C26873T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526746
 2020-08-11 2020-09-02
 South Korea hCoV-19/South Korea/KCDC2813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T A3057G A11895T C11916T C14408T C16650T A20675T A23403G G25563T G29179T G29779T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_527390
 2020-08-11 2020-09-03
 United States hCoV-19/USA/PR-B5X4/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T833C C1059T C1627T C3037T C5512T C6541T C8139T C9515T C11379T C14408T G14890A C17125T A19175C T19839C A22320G A23403G G25523T G25563T C27964T T29685G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527391
 2020-08-11 2020-09-03
 United States hCoV-19/USA/PR-B5XH/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C841T C1059T G1598A C3037T G6052A C7600T C10319T C14408T G19872T C21621T G21795A G22201T A23403G G25563T G25855T C27964T G28975T G29254T G29474T G29764T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_527392
 2020-08-11 2020-09-03
 United States hCoV-19/USA/PR-B5XJ/2020
 ATTAAAGG1- C21T C241T T833C C1059T C3037T C5512T C6541T C8139T C9515T C11379T G12028A C14408T C17125T A19175C T19839C A22320G A23403G C23896T G25523T G25563T C27964T T29685G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861A

EPI_ISL_527393
 2020-08-11 2020-09-03
 United States hCoV-19/USA/PR-B5XS/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T833C C1059T C3037T C5512T C6541T C8139T C9515T C11379T G12028A C14408T C17125T A19175C T19839C A22320G A23403G C23896T G25523T G25563T C27964T T29685G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_527394
 2020-08-11 2020-09-03
 United States hCoV-19/USA/PR-B6BV/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T833C C1059T C3037T C5512T C6541T T7324C C9515T C11379T C14408T C17125T A19175C T19839C A22320G A23403G G25523T G25563T C27964T T29685G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_527395
 2020-08-11 2020-09-03
 United States hCoV-19/USA/PR-B6CA/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T833C C1059T C3037T C5512T C6541T T7324C C9515T C11379T C14408T C17125T A19175C T19839C A22320G A23403G G25523T G25563T C27964T T29685G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862TTA

EPI_ISL_527396
 2020-08-11 2020-09-03
 United States hCoV-19/USA/PR-B6CS/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T C14408T C18486T C18912T A20268G T22162C A23403G C26151T C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_527631 MT958263
 2020-08-11 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5339T C5893T C6040T T6174G C8140T C8208T G14371T C14408T C16260T A23403G A25167T G25440T G25563T C28821A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_528456
 2020-08-11 2020-09-07
 Ireland hCoV-19/Ireland/72IRL08314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6566T G10265A C14408T A15972G C17678T A17864G C19718T G20002T G22205T A23403G C23707T T24892C C27128T G27541T G27544T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528457
 2020-08-11 2020-09-07
 Ireland hCoV-19/Ireland/72IRL08381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1758T C3037T G6566T G10265A G11083T C14408T A15972G C17678T A17864G C19718T G20002T G22205T A23403G C23707T T24892C G27541T G27544T T28759C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530141 MT997222
 2020-08-11 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2784/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C556T C1059T G2286A C3037T A4197G G7954T A10552G G11083T T11611C C14408T C16969T A23403G G25563T A28715T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_530142 MT997221
 2020-08-11 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2785/2020
 ATTAAAGGTTTAT1- C241T C3037T G4510T C14408T C15933T T19839C C21139T T22690C A23403G T25451C G27281T GGG28881AAC G29402T C29784T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_530817
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969F3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8140Y C14408T C22687T A23403G G24161R G26389K G27916T GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530827
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969CCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T T7942C C14408T C15324T A16044T C21855T A23403G G23593C G24932T A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530832
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20580T A23403G C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530834
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969E99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T G16700T G18181A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530839
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969BED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530842
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969CF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1679A T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530863
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969C80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C12525T C14408T G19009T G19648T A20268G T21158C A23403G C23625T C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530891
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969FD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C6286T A6999G G8287T T12736C C14408T G21255C C22227T A23403G C26801G G27877T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530896
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969ED5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T G2183A C3037T C5849T T7891C A9433T T9668C G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530950
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9652BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T A19682G G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530955
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964DEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T A23403G C23525T A23796G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530960
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C6286T A6999G G8287T T12736C C14408T G21255C C22227T A23403G C26801G G27877T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530962
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-964D28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C20451T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530967
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9656C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5461S G11447A C14408T C21648T A23403G A25241R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530992
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96953A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C6286T A6999G G8287T T12736C C14408T G21255C C22227T A23403G C26801G G27877T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531003
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531009
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9653F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T G12038A C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531011
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1489Y C3037T G5461S G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531016
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964DFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531017
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-964CB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C21411T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531022
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964D19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C4090T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531035
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964C76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G20302A G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531037
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964CA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T444G C1884T G2183A C3037T A9433T T9668C G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531046
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964DDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445Y C2471Y G2659K C3037T C5055Y C5170Y C6286Y G11132K G11851K C14408T A14578R C14786Y G17523K G21255S G22094S C22227Y A23403G G23522S G24812K G25049K C26801G C26895Y GGG28881RRS C28932Y G29645K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531059
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964C2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10440T T12145G C14408T G16943T C20759T C21676T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531069
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T C28854T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531074
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964B97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7789C C14408T C18486T A20268G T22162C A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531082
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531112
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964C49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7173T C8991T C11289T C14408T T15051C A20255G G21255C A23403G G28166A GGG28881AAC G29090T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531119
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4927T C5183T A8072G C14408T G16207T A23403G G25166C T26182C GGGGAACTT28881- C29160Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531127
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-9648DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531133
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9651FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C8964T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531137
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9694D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T A13809C C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531138
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-969B29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531139
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11563T C14408T G21220K A23403G G25617T G28376A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531141
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9648FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531151
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T C14408T C15180T C16887T T19839C A23403G C28290T GGG28881AAC C29095T G29140T G29527T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531152
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964AE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2644A C3037T T7767C C7844T C8047T C14408T C17104T A20268G C22879A A23403G T24925C G26122T C26985T C27800A C27920T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531157
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-964AF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C398Y C703Y A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531164
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C25836T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531165
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964B00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531179
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G C24023T GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531182
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964C94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A AGGTTTGAAAACCCTTGCTACTCATGGTTTAGCTGCTGTTAATAGTGTCCCTTGGGATACTATAGCTAATTA6616- C14408T C21575T C21637T C22227T A23403G C23525T T26812C A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531195
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9649E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8749C C11224T C11941T C12043T C12242T C14408T G17014T C18877T A20716C C22444T A23403G G25494T G25563T C26735T C28854T G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531201
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964C3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531207
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-964A4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G13960R G14202T C14408T G19542T C19718T C22388T A23403G C26060T C26889T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531209
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964BA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5572K C14408T C18486T A20268G T22162C A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531213
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964A12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531216
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969AA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6977A T6979A A8072G C9598Y A13444T C14408T C15371T G18186T C21005T C21575T A23403G G25166C G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531219
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-964933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531464
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9630D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29587A G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531471
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963C77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1457Y C1912T C3037T G4105T G4180T T10453C C11195T C14408T A21163G A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531473
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9627E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531487
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963D29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T C8326T T10453C C11195T C14408T C15960T G16068T T16993C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531489
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963B7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T A10973G T14313C C14408T G15652T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531494
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963BA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C13887T C14408T C21639T A23403G C23731T GGG28881AAC C29386A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531500
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9627D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C13721T C14408T A15477T C18395T A20222G AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531506
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-963020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A C7002Y G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531508
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963BC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G G23593T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531509
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96312D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A994G C3037T G4105T C4391A C11124T C13792T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531518
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963CA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C11152T C14408T G20991T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531519
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531521
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963CC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C11152T C14408T A23403G C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531526
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A5B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531543
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963D38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3486A C3653T C14408T C15319T A23403G C25624T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531545
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963CFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T T26112K C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531546
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96314B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531548
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96315A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531554
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963B3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T12145G C14408T C20759T C21676T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531577
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9633CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531583
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96305D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531590
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9629BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203Y C241T A1163T C3037T T3256C C5622T C11653T G14202T C14322T C14408T G19542T C19718T C22388T C22687T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531603
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962D57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531604
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T T15931Y G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531608
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-963257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531610
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962D84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C13721T C14408T A15477T C18395T AGA20622TTT G22201T A23403G C23730T G25563T G25855T A26319G C28854T G29044A G29134T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531611
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-963248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531617
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-963354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531622
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-963406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C4965T A8072G C14408T A16011G A21213G T22334A A23403G A25759G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531628
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96320C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T A19720R C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531629
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9634D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531634
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-962E45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531643
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9630B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T A2015G C3037T G4105T G4180T C8841Y T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531649
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-962C69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531668
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9631F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13261T C14408T G23311T A23403G C24138T C25549T C25777T GGG28881AAC G29554T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531669
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9629EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C13887T C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531672
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-962FCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531678
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9631D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14322T C14408T G19542T C19718T C22388T C22687T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531685
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962DFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531691
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-962B5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C11653T G14202T C14322T C14408T G19542T C19718T C22388T C22687T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531693
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962D66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531701
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962E09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531703
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-962C78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14322T C14408T C18695T G19542T C19718T C22388T C22687T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531713
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962DDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531714
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9632DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531725
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962CC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531728
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-962F15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531730
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-962B11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G370T A1163T C3037T T3256C C5622T C11653T G14202T C14322T C14408T G19542T C19718T C22388T C22687T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531731
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962BF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5000T C9430T G10540T T11737C C12823T T14289A C14408T A16920C A23403G C27092T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531752
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962DEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATG518- C3037T C8683T C14408T G15406T C21637T A23403G C26198T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531763
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9634CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T C16443T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531768
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-962AAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531773
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9630A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531785
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-962F24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2106Y C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531790
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T G8600S GT8602KY C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531797
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96322A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531801
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9631E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14322T C14408T G19542T C19718T C22388T C22687T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531805
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-962BA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C25282T G25302T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531822
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531829
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-963284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1248M C3037T G3242A G8120C C11758T C14408T C15738T T19839C C21646T A23003G A23403G A24205T G28083T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531834
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-963099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531838
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-962CB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5000T C9430T G10540T T11737C C12823T T14289A C14408T A16920C A23403G C27092T GGG28881AAC G29777K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531842
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-962B20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C G3661R C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531858
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-962AF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_532348
 2020-08-11 2020-09-11
 United Kingdom hCoV-19/England/QEUH-95E69F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534252
 2020-08-11 2020-09-11
 Sweden hCoV-19/Sweden/20-52565/2020/P1
 C241T C2721T C3037T C5826T T6334C C6606T T8063G C10818T C13011T C14408T G22992A A23403G C24378T G26158T T26966C

EPI_ISL_534253
 2020-08-11 2020-09-11
 Sweden hCoV-19/Sweden/20-52566/2020/P1
 C241T C3037T C3156T C5826T T6334C C6449T T8063G C10818T C11494T C13011T C14408T G22992A A23403G C24797T G26158T T26966C

EPI_ISL_534336
 2020-08-11 2020-09-14
 Taiwan hCoV-19/Taiwan/NTU30/2020
 C241T G515A C1912T C3037T C5467T T12503C C14408T G19086T A23403G G25770T C28744T GGG28881AAC C29721T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_534371
 2020-08-11 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-964344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534698
 2020-08-11 2020-09-14
 United States hCoV-19/USA/PR-B6DU/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T833C C1059T C3037T C5512T C6541T A7024W C9515T C11379T C11886T C14408T A14475R C17125T A19175C T19839C A22320G A23403G CA25366YM G25523T G25563T C27964T T29685G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_536819
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9644F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10440T T12145G C14408T G16943T C20759T C21676T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536827
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-964414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536829
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-963925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536831
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964854/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536833
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96457B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T G19184T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536839
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C3602T C6941T C14408T C15324T C21855T A23403G G25455T A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536841
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T G16700T C21234T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536851
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9647B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536852
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9643CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536853
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9648AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C2062T A2810G C3037T C6395T A10317G A12410G C14408T C16323T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536854
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9647DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A A10844G T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536874
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-964502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536875
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96463C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1884T G2183A C3037T A9433T T9668C G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536882
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T283C T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536885
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96446F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20703T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536887
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96421A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C11195T C12513T C14408T G14866A A23403G A28104T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536891
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T T1771A C1912T C3037T G4105T G4180T T10453C C11195T C14408T T16993C C21727T A23403G G28621R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536896
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536897
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9643DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T G21157R A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536899
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C5907T C13247T C14408T C14937T T18144C A23403G C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536905
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T T2454C C3037T G3483T G10097A C10369T T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536907
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9645F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536910
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9166T G12070T A12413T C14408T G15327T G19072T A20268G A23403G A25531G G27008T G27467C C28833T C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536917
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5434C T6004Y C14408T G15543T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536922
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536923
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9646F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536925
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9647EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9166T G12070T A12413T C14408T G15327T G19072T A20268G A23403G A25531G G27008T G27467C C28833T C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536934
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9642A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T C21614T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536948
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536952
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-963F23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G7846A G10886A C14408T G17278T C18032T G18105T G18662C C21575T A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536954
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9643F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T T2454C C3037T G3483T G10097A C10369T T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536959
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96471B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T C4683T T10453C C10507T C11195T C12513T C14408T G14866A A23403G A28104T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536961
 2020-08-11 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C12924T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539654
 2020-08-11 2020-09-19
 India hCoV-19/India/TG-CCMB-AA407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A G6077T C6573T C14408T C19524T A23403G C25528T G26730C GGG28881AAC G29422T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539663
 2020-08-11 2020-09-19
 India hCoV-19/India/TG-CCMB-AA332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C5784T C6573T G9049A C14408T G14874T G19518A A23403G C25528T A25998G G27561T GGG28881AAC G29332T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539687
 2020-08-11 2020-09-19
 India hCoV-19/India/TG-CCMB-AA370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C9693T C10815T C14408T G14500T C16626T A23403G GGG28881AAC G29474T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539688
 2020-08-11 2020-09-19
 India hCoV-19/India/TG-CCMB-AA371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C9693T C10815T C14408T G14500T C16626T A23403G GGG28881AAC G29474T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539689
 2020-08-11 2020-09-19
 India hCoV-19/India/TG-CCMB-AA375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C9693T C10815T C14408T G14500T C16626T A23403G GGG28881AAC G29474T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539690
 2020-08-11 2020-09-19
 India hCoV-19/India/TG-CCMB-AA403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C9693T C10815T C14408T G14500T C16626T A23403G GGG28881AAC G29474T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539694
 2020-08-11 2020-09-19
 India hCoV-19/India/TG-CCMB-AA456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A4372G C4543T C5700A C9693T C14408T C16626T AA21550CT A23403G C28045T GGG28881AAC G29648T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539716
 2020-08-11 2020-09-19
 India hCoV-19/India/TG-CCMB-AA311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T G17808T G19398T A20898T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539738
 2020-08-11 2020-09-19
 India hCoV-19/India/TG-CCMB-AA328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1599T G1895A C3037T A6466G A6616G A7319G G7954T C14408T G21624T A23403G G23587T G28914T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539751
 2020-08-11 2020-09-19
 India hCoV-19/India/TG-CCMB-AA241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G219T C241T C3037T C8917T G9389A C14408T A23403G G23587T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_539754
 2020-08-11 2020-09-19
 India hCoV-19/India/TG-CCMB-AA315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2325T C3037T G4354A C5506T C6573T A12547T C14408T A23403G C25528T G27670T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_539757
 2020-08-11 2020-09-19
 India hCoV-19/India/TG-CCMB-AA372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C9693T C10815T C14408T G14500T C16626T A23403G GGG28881AAC G29474T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_541211
 2020-08-11 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T11675C C14408T T22843C A23403G C25452T C26010T C26873T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_541767
 2020-08-11 2020-09-23
 United Kingdom hCoV-19/England/BHRT-24B3FAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18486T A20268G T20494G T22162C A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547689
 2020-08-11 2020-09-24
 United States hCoV-19/USA/WI-GMF-14849/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T T1592C C2416T C3037T C6113T C14408Y T16530A G21372T A23403G G25563T C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547690
 2020-08-11 2020-09-24
 United States hCoV-19/USA/WI-GMF-14850/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C715T C1059T G1957T C3037T C11916T C14408T A23403G A23586G G25563T CTG28893AAA ACGATCG29749- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547691
 2020-08-11 2020-09-24
 United States hCoV-19/USA/WI-GMF-14857/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C715T C1059T G1957T C3037T C11916T C14408T A23403G A23586G G25563T CTG28893AAA ACGATCG29749- TTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29816-

EPI_ISL_547698
 2020-08-11 2020-09-24
 United States hCoV-19/USA/WI-GMF-15087/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T T1592C C2416T C3037T C6113T C14408T T16530A G21372T A23403G G25563T C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548591
 2020-08-11 2020-09-26
 United States hCoV-19/USA/CA-CZB-4082/2020
 ATTA1- G101R C241T C1059T C2433T C3037T C3602T G11083T C14408T C16762T C19572T G22112A A23403G A24894C G25563T G27583T G29024T C29095T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860M

EPI_ISL_548613
 2020-08-11 2020-09-26
 United States hCoV-19/USA/CA-CZB-4083/2020
 ATTA1- C241T G1820T G2946A C3037T C14408T C14599T A20268G A23403G C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548614
 2020-08-11 2020-09-26
 United States hCoV-19/USA/CA-CZB-4088/2020
 C241T C344T G872T C906T C1288T G2867T C3037T G3815R C11866T C14408T C15763T C17474Y C19662T A20268G G20962T C22978T A23403G C28849T C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_552479
 2020-08-11 2020-09-28
 United Kingdom hCoV-19/England/ALDP-982BC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560988
 2020-08-11 2020-09-30
 Sweden hCoV-19/Sweden/20-52586/2020
 C241T C366T C1218T C3037T G8137T C14408T G16075T A22629G A23403G C26447T GGG28881AAC C28887T

EPI_ISL_562641
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC11124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562672
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC9362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562795
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC10118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C3738T C4832T T7540C C14408T G16647T C18555T C19170T G21800T G22992A G23401A A23403G C25703T C26571T GGG28881AAC C29625Y TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562801
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC10130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C3738T C4832T T7540C G10523C C14408T G16647T C18555T C19170T G21800T G22992A G23401A A23403G C26571T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563270
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC11147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T T16491C G16647T C17850T C18555T A19892G G22992A G23401A A23403G C25624T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563277
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC11162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C8389T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_563699
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC13374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3860T T7540C C14408T C15352T G16647T C18555T C21812T G22992A G23401A A23403G G24992C A26162G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564618
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC7738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C1263T C3037T T7540C T10717C C14408T G16647T C16946T C18555T C21621T G22992A G23401A A23403G G28817T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564721
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC7875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564759
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC7940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564760
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC7941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564793
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC7988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564812
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC8032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C16997T C18555T G22992A G23401A A23403G C26464A C27804Y GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564881
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC8165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T G7328T T7540C C14408T G16647T C18555T T21369C G22992A G23401A A23403G T28009C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564908
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC8222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC C29754Y TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564909
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC8227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C3738T C4832T T7540C C9491T T14136C C14408T G16647T C18555T C19170T G21800T G22992A G23401A A23403G C26571T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564910
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC8229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C20759Y G22992A G23401A A23403G C27389T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564912
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC8236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C384Y A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564956
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC8345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C75T C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G C28695G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_564961
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC8352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3634T T7540C C9996T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29119Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565135
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC8665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T G1820R C3037T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565455
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC9231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565459
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC9239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565461
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC9242/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T A1163T C3037T T7540C C14408T G16647T G17014K C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565463
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC9246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C482Y G558K G660K G663K A1163T G2036K G2604K G3004K C3037T G3259K C3505Y G3564K G4505K G5155K G5375K G5378K G5880K C6468Y G6483K G7017K G7038K G7214K G7246K T7540C G8790K G8999K G9141K G9249K C9996T G10986K G11392K G11535K G12164K G13240K G13571K G14277K C14408T C14536Y G14548R G15199K G15202K G16647T G17096K G17848K G18318K C18555T G19252K G21123K G22018K G22899K G22992A G23401A A23403G C23766Y G24557K G24933K G28077K G28079K G28559K GGG28881AAC G29779K G29781K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565464
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC9248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C23638Y C27059T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565465
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC9250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565466
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC9251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T G558K A1163T C3037T G3564K G5924K T7540C A8308G G8790K C14408T G16647T CT17734TC C18555T A20262G G22899K G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565467
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC9252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A24610G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565469
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC9254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTG1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565737
 2020-08-11 2020-09-30
 Australia hCoV-19/Australia/VIC9833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G558K G660K G663K A1163T C3037T G3564K G5375K G7038K G7246K T7540C G9249K G10986K G11392K G11535K G12164K G13571K A14084G C14408T G16647T G17096K C18555T G22992A G23401A A23403G C23707T G24557K G24933K T27785C G28079K GGG28881AAC G29779K G29781K CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_568574
 2020-08-11 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G669A C3037T T4346C G7393T C9286T C10376T C14408T C14708T T22020C A23403G T27346C C28725T AG28877TC GGG28881AAC G29692T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_568575
 2020-08-11 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T T4346C C9286T C10376T C14408T C14708T T22020C A23403G C28725T GGG28881AAC G29692T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_569172
 2020-08-11 2020-10-02
 France hCoV-19/France/IHU-1461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1912T C3037T G5210A C6224T C14408T C15324T C17470T C21191T A23148G A23403G T27125C C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569174
 2020-08-11 2020-10-02
 France hCoV-19/France/IHU-1470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T445C C3037T A5317G C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569175
 2020-08-11 2020-10-02
 France hCoV-19/France/IHU-1475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C3096T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A C23188T A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569176
 2020-08-11 2020-10-02
 France hCoV-19/France/IHU-1476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1912T C3037T G5210A C14408T C15324T C17470T C21191T A23148G A23403G T27125C C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569177
 2020-08-11 2020-10-02
 France hCoV-19/France/IHU-1481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T G6804A C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569178
 2020-08-11 2020-10-02
 France hCoV-19/France/IHU-1486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569179
 2020-08-11 2020-10-02
 France hCoV-19/France/IHU-1488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G27852T G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MW023472
 2020-08-11 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T11675C C14408T T22843C A23403G C25452T C26010T C26873T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_522895 MT929115
 2020-08-12 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14178T C14408T G19677T A23403G C25276T C28977T C29077T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522903 MT929123
 2020-08-12 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T C14408T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522927 MT929148
 2020-08-12 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2232T C3037T G3995A C5183T A8051G T8749G C14408T C16289T C17163T C21302T CG21304AA C21859T A23403G G25563T G25947T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522935 MT929156
 2020-08-12 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C19979A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523774
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C4276T G10097A C10252T C13536T C14408T C19983T A20374G T21154G A23403G C23731T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523776
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6192A C6582T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523777
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T T1918C C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T C29670T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523778
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523779
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2747T C3037T C3602T C6941T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523780
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523782
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523783
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T T1918C C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A G25621T T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523784
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C344A G1820A C3037T C9430T C10582T C12823T C14408T A23403G G25471T C27143T C28290T GGG28881AAC G29260T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523785
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523786
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A G26634T T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523787
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523788
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A G26634T T27342C G28655T C28887T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523789
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T A6659G G12191T C13261T C14408T T16479C G21157A A23403G GGG28881AAC C29642T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523790
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T A6659G G12191T C13261T C14408T T16479C G21157A A23403G GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523791
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T C29370T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523792
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1407C C1766A C3037T C3602T C6941T C14408T C15324T C21855T A23403G G25455T A25505G G25906C G25996T C26894T C28651T C28869T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523794
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A G26634T T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523795
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A G26634T T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523796
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G526T C3037T C8809T C12789T C14408T C15324T A23403G G25785T G27877T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523798
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C3923T G4510A G5374A A10875G C14408T G19480A A23403G C24463T T26897A GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523799
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T T1918C C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C15342T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T C29670T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523800
 2020-08-12 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1060T C1594T T1918C C3037T T4640C C5512T C6195T C7119T C9246T C11109T C12415T C14408T C14913T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29392T G29402T G29692C GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523887 LR880597
 2020-08-12 2020-08-27
 Switzerland 240045
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A C14358T C14408T A21137G A23403G C25413T G25690T T27134C G27214R GGG28881AAC C29585Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523889 LR880596
 2020-08-12 2020-08-27
 Switzerland 240047
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1438G C3037T C3738T G9130T C14408T C16111T A23403G T27319C G28346T G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523891 LR880604
 2020-08-12 2020-08-27
 Switzerland 240050
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T3028W C3037T C3738T G9130T C14408T C15540T G16065T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523892 LR880610
 2020-08-12 2020-08-27
 Switzerland 240051
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2927R T2989Y C3037T T3144B C3738T C6317Y T6978W G9130T C14408T C16111T A23403G C25889T T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523894 LR880601
 2020-08-12 2020-08-27
 Switzerland 240053
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C203T C241T A2905W A2936W C3037T T3095C A3111R A6915R T6923Y T6972K T6991Y G10265A C12880T C14408T C15126T A15972G C19718T A23403G G28077T T28759Y GGG28881AAC G29692K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523895 LR880614
 2020-08-12 2020-08-27
 Switzerland 240054
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A3536M C3551M T3605Y T3741Y T5403Y AA5420MW AG5424WK C5526Y G10265A C14408T C15720T A15972G A16210W C19718T A23403G G24193T G26700T T28759Y GGG28881AAC G29348T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523896 LR880629
 2020-08-12 2020-08-27
 Switzerland 240055
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G602R C3037T T3750Y G3753K T5377Y G5433K C6926S G9130T T10076W C12525T C14408T C16111T A16210W G16292K G16416R C17474T A23403G C24795T C25613Y T27319C G28487A G28514T C28708Y C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523899 LR880625
 2020-08-12 2020-08-27
 Switzerland 240059
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T T3144W T3723W G4006T C5170T C6286T T6931Y G11132T C14408T A16210W G16246K G16411K G17667T G21255C G21305A C22227T A23403G T25569G T26609C C26801G C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523900 LR880620
 2020-08-12 2020-08-27
 Switzerland 240060
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T G9130T C14408T C16111T A23403G G25500A T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523920 LR880644
 2020-08-12 2020-08-27
 Switzerland 240083
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C5183T C10525T G11161A C14408T G14638T C17119A A23403G A26040G T27299C GGG28881AAC T29148C G29212A G29543T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523921 LR880634
 2020-08-12 2020-08-27
 Switzerland 240084
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C815T C2933Y C3037T T3144K G3239A G7042K C8752T C14408T C15324T T17142W T17688Y G21334T A23403G C25904Y G27147K G28655A G28881A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523922 LR880637
 2020-08-12 2020-08-27
 Switzerland 240086
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C829T G1820A C2933T C3037T C4752T T6971C C7401Y G11842A A12759G A13449G C14408T G18292T A20268G A23403G T24523Y G26730T C27679T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523923 LR880635
 2020-08-12 2020-08-27
 Switzerland 240087
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1913Y C3037T G3585K T3730Y T5356Y T6890Y T6893W G10265R G11083K A11991R G13386R C14408T C14805Y T15114Y C15720T A15972G C19718T G20940K C22993S A23403G G23580S C26461Y G26700T G28628K T28759Y GGG28881AAC G29348T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_525431
 2020-08-12 2020-08-29
 Ecuador hCoV-19/Ecuador/USFQ-177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T G3403T C14408T A23403G A26530G

EPI_ISL_525432
 2020-08-12 2020-08-29
 Ecuador hCoV-19/Ecuador/USFQ-178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A14747G C16658T A20755C A23403G G25563T

EPI_ISL_525436
 2020-08-12 2020-08-29
 Ecuador hCoV-19/Ecuador/USFQ-186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2987C C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_525437
 2020-08-12 2020-08-29
 Ecuador hCoV-19/Ecuador/USFQ-188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T G3403T C14408T A23403G A26530G

EPI_ISL_526425
 2020-08-12 2020-09-01
 United Kingdom hCoV-19/England/NOTT-112F1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8650T C14408T G20477T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526531
 2020-08-12 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB7357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T T2083G C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526532
 2020-08-12 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB7358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526611 MT956735
 2020-08-12 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1125/2020
 ATTAAAGGTTT1- C241T C3037T T14382C C14408T T22843C A23403G C25452T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527397
 2020-08-12 2020-09-03
 United States hCoV-19/USA/PR-B6ZT/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T A12709T C14408T C16626T A23403G G25563T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_527398
 2020-08-12 2020-09-03
 United States hCoV-19/USA/PR-B74P/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C14408T A23403G G25563T G29861A G29864C A29866G ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_527399
 2020-08-12 2020-09-03
 United States hCoV-19/USA/PR-B75X/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G167A C241T T833C C1059T C3037T C5512T C6541T C8139T C9515T C11379T G12028A C14408T C17125T A19175C T19839C A22320G A23403G C23502T C23896T G25523T G25563T C27964T T29685G G29862C GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864CC

EPI_ISL_528438
 2020-08-12 2020-09-07
 United Kingdom hCoV-19/England/20342000104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G569A C2485T C3037T G4881A C11103T C11202Y C14408T C17795T C21597T C21750A TTTATT21990- T22200C G22927T GA23012AG A23403G A26377T A28271- C28833T GGG28881AAC C29253T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_528461
 2020-08-12 2020-09-07
 Ireland hCoV-19/Ireland/72IRL11133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528462
 2020-08-12 2020-09-07
 Ireland hCoV-19/Ireland/72IRL11143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T T6890C G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528463
 2020-08-12 2020-09-07
 Ireland hCoV-19/Ireland/72IRL11149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C5301T G5572T T7767C C8047T C8326T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528467
 2020-08-12 2020-09-07
 Ireland hCoV-19/Ireland/72IRL12629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528468
 2020-08-12 2020-09-07
 Ireland hCoV-19/Ireland/72IRL12648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C5301T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G25726T G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528471
 2020-08-12 2020-09-07
 Ireland hCoV-19/Ireland/72IRL13552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3045T A10323G C14408T T15507C G16852T C18877T C22444T A23403G G25563T C26735T C28854T G29239A A29499T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528472
 2020-08-12 2020-09-07
 Ireland hCoV-19/Ireland/72IRL14394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C10030T C14408T A15477T C18395T AGA20622TTT A21625G A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528473
 2020-08-12 2020-09-07
 Ireland hCoV-19/Ireland/72IRL14688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T TATTGAAGTGAA3331- C14408T A15984T C20946T C23185T A23403G G25599T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529724
 2020-08-12 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002724/2020
 ATTAAAGGT1- C241T C1059T C3037T C3511T G4300T T5626C A10323G C14408T G15438T G20173A C22591T A23403G G25563T T28823G AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_529751
 2020-08-12 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C14408T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529753
 2020-08-12 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529760
 2020-08-12 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T G376T A3021G C3037T C4021T C4543T C6762T G11230T T12503C C14408T A15779G T23296C A23403G T23407C G25770T A28653G GGG28881AAC C28896T C29721T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_529761
 2020-08-12 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529954 MT993881
 2020-08-12 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T T8827A C12525T C14408T A23403G G25563T C25658T G29179T C29870A

EPI_ISL_529955 MT993882
 2020-08-12 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1265/2020
 ATTAAA1- C241T C1059T C3037T T8827A C12525T C14408T A23403G G25563T C25658T C26858T G29179T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_529956 MT993883
 2020-08-12 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1266/2020
 C241T C1059T C3037T T8827A C12525T C14408T A23403G G25563T C25658T G29179T

EPI_ISL_529957 MT993884
 2020-08-12 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1268/2020
 C241T C1059T C3037T T8827A C12525T C14408T A23403G G25563T C25658T G29179T

EPI_ISL_529958 MT993885
 2020-08-12 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1271/2020
 ATTAAA1- C241T C1059T C3037T C6500T C10319T C14408T C18166T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T

EPI_ISL_529959 MT993886
 2020-08-12 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1273/2020
 AT1- C241T C1059T C3037T G7936T G11245A C11412T C14408T G17427T G22289T A23403G G25563T C27964T C28833T

EPI_ISL_529960 MT993887
 2020-08-12 2020-09-10
 United States SARS-CoV-2/human/USA/VA-DCLS-1274/2020
 ATTA1- C241T C1059T T1813A C3037T G7936T G11245A C11412T C14408T A16474G G17427T G22289T A23403G G25563T C27964T C28833T

EPI_ISL_530143 MT997232
 2020-08-12 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2786/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C3037T G11083T C14408T A20288G C21721T A21866G A23403G C26894T C28638A GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_530144 MT997216
 2020-08-12 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2787/2020
 ATTAAAGGTTTATA1- C241T C1059T T1927C C3037T C10319T C10626T C10755T C14408T A18424G C21304T C21727T A22255T A23403G G25563T G25907T G27014T C27964T C28472T C28869T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_530145
 2020-08-12 2020-09-10
 United States hCoV-19/USA/WA-S2788/2020
 ATTAAAGGTTTAT1- C241T C3037T C14408T T19839C C20148T A23403G C27925A G27948T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_530603
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F5CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2270G C3037T C9724T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530807
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A8B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3818G C5055T G11851T C14408T C14786T G16158K A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530808
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969D23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T C313T C2453T C3037T G9190T C14408T G19072T C19488T G22918T A23403G C24061T G25244T T26518C G28396A GGG28881AAC G29227A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530820
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969F69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T C15720T G18674A C18894T A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530825
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969D41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C635Y C3037T C5170T C6286T G11132T C14408T A14578G G21255C G22094C C22227T A23403G G23522C G25049T C26029A C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530841
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969C08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530843
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A G4720R C11124T C14408T G14792T C15848T G19254T T19893C A21137G C21622A A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530844
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969CDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530851
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C3C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530852
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969C35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T G21255T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530859
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969C71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T A23403G C25207T C25665T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530866
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A0FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530887
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969F0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T C16887T G17278T C18032T G18105T G18662C A23403G C23625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530892
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969CEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530897
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C34C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530909
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969F2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G G22335T A23403G C25889T G27217A G28727K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530913
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969E6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T A8086G A9433T TAT9858- G10265A C12919T C14408T A19650G A23403G T24499C G24947R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530917
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969CBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C C9056T C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C G27962T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530928
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BFFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G T27815C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530940
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C3D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530942
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C5FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1601A C3037T C5784T T7897C A8019C C14408T A20268G A23403G G24038T G27382A C27982T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530945
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969D05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530947
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T C8713T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T G26779C T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530952
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9698D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20703T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530956
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969AD1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC G29543T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530957
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19254T C21575T A23403G C24023T GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530964
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96563B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C875T C2416T C3037T A10904G C14230T C14408T T18099C C21058T A23403G G25249T G25563T G25785T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530966
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T C16580T A23403G C25207T G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530976
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-969AFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530977
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C2062T A2810G C3037T C6395T A10317G A12410G C14408T C16323T A18366G C18788T T19839C T21093C A23403G C25703T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530978
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9659AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530995
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9658AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531001
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9655D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531007
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G C25046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531010
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9658CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4321T T4431W C5055T G11851T C14408T C14786T C15371T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531013
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9651EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G T25139C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531015
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9652DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C751T C1884T G2183A C3037T C5849T A9433T T9668C G10265A C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531018
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96520A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531021
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531023
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969B65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G T25139C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531027
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969AE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531028
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9698E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531045
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-965871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28332T C28932T G29090T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531058
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969B83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531062
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9656A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531065
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-969A2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C2401Y C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531067
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T G4510T C6968T A9925T C11095T C14408T A15984T C20946T T21787C A23403G C25919T G26062T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531070
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C11152T C14408T T17742C A23403G C26058T GGG28881AAC A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531071
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531073
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9695D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531076
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969B47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531078
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531080
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531084
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C2110T C3037T A5341R C14408T A23403G A28043T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531097
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96564A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A C11124T C14408T G14792T C15848T G19254T T19893C G21624A A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531101
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9651D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T G13425A C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531108
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1266T T1947C C3037T T3718C C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531109
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9652EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C10188T A12061C C13384T C14408T C21575T C21637T A23403G C23525T A28169G GGG28881AAC G29781T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531116
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9655E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531140
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531145
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9694C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1266T T1947C C3037T T3718C C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531150
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96571A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G C21682T A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531158
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969BA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11653T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531163
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9653CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T G625T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G25522A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531169
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96545F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C6628T C8318A C10615T C14408T G16075T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531180
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9652FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531185
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969B38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3339C T5507A C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531186
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9694A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531192
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9656B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4927T C5183T A8072G C14408T G16207T A23403G G25166C T26182C GGGGAACTT28881- C29160Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531200
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9655C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T177C C241T C3037T C11455T C12115T G13617T C14408T C17639T T19839C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531203
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2447A C2536T C3037T G9463A C14408T G15438T A23403G C25207T T26160C G26918T C28453T GGG28881AAC A29407G T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531206
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9653DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C745T C3037T C14408T G14829T T19383A T21790Y A23403G C25889T C28093T C28647T GGG28881AAC G29427T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531210
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-969488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531217
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965817/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T C15371T A23403G G24812T G25455T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531296
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BD21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13620T C14408T A23403G GGG28881AAC T29470C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531475
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7173T C8991T C11289T C14408T T15051C C15183Y A20255G G21255C A23403G C25728T G28166A GGG28881AAC G29090T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531484
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-963DFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C24034T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531486
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963E71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531502
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-963D74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25244T G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531510
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963D65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T G11083T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531522
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963B98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C13887T C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531539
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963D56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531540
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531555
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635Y C3037T C7173T C8991T C11289T C14408T T15051C A20255G G21255C A23403G C25728T G28166A GGG28881AAC G29090T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531562
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963BF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531563
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-963E17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531564
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-963BE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C7564T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C26889T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531565
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96A663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531569
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-963A22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174C C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C T26972C C27800A G28378T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531574
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A77F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G701T C3037T C4543T G5629T G9526T T10955A C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G27996T G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531745
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2836T C3037T C5416T C14408T C18877T G21830T C22444T C23277T A23403G G25437T G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531811
 2020-08-12 2020-09-11
 United Kingdom hCoV-19/England/QEUH-963846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T C6286T G11132T C14408T A14578G G21255C G22094C C22227T A23403G G23522C G25049T G26763K C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534366
 2020-08-12 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-963A7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G G25407R GA25409SM T25412W C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534367
 2020-08-12 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-963F8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534369
 2020-08-12 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-963A6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C25469T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534377
 2020-08-12 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-963F7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534380
 2020-08-12 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96407A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14322T C14408T C18695T G19542T C19718T C22388T C22687T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534389
 2020-08-12 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-9644D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534392
 2020-08-12 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-9640C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534393
 2020-08-12 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-9644C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534398
 2020-08-12 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-964308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534405
 2020-08-12 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-963AE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536821
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9641C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536825
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/England/QEUH-963AC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536830
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Wales/QEUH-96A3F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536835
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-96412C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536838
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/England/QEUH-963F6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536842
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-96404D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536855
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9646A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536860
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-964168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21552Y C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536865
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-964326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A21163G A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536871
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-96406B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C9303T C11758T C14408T C15738T T19839C C21646T A23003G A23403G A24205T G28083T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536873
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-963F05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536886
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-963FE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536888
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A21163G A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536890
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-963EDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6628T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536895
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-963EEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C206Y C241T C3037T G3242A G8120C C14408T C15738T C16428T T19839C C21635T C21646T A23403G A24205T G28083T GGG28881AAC C29659Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536906
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-963FD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536908
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G4298T C8660T G10097A T10992C C11001T C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536911
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-9641A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C G19947K C21552Y C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536912
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-9642FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G C27686T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536921
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-964159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C815Y C1912T C3037T G4105T G4180T T10453C C11152Y C11195T C14408T C16733Y C20368Y A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536924
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Wales/QEUH-96A180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3049C C14408T G21624T A23403G C26013G G27877T A28523G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536926
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-963F9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C11758T C14408T C15738T T19839C C21646T A23003G A23403G A24205T G28083T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536931
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-96410E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T C5622T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19648K G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536935
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-96411D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC C28893T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536937
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A2AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G G22335T A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536947
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A0CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8026G C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536949
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-96402F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T C10332T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536950
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536960
 2020-08-12 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96449C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539633
 2020-08-12 2020-09-19
 India hCoV-19/India/TG-CCMB-AA560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6026T C6573T C14408T A23403G C25528T C25549T C28528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539634
 2020-08-12 2020-09-19
 India hCoV-19/India/TG-CCMB-AA562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6026T C6573T C14408T A23403G C25528T C25549T C28528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539638
 2020-08-12 2020-09-19
 India hCoV-19/India/TG-CCMB-AA622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3774A G4354A C6573T C14408T A23403G C25528T C25693T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539641
 2020-08-12 2020-09-19
 India hCoV-19/India/TG-CCMB-AA624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A G4881A C6573T C14408T A23403G C25528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539647
 2020-08-12 2020-09-19
 India hCoV-19/India/TG-CCMB-AA509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A G4881A C6573T C14408T A23403G C25528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539649
 2020-08-12 2020-09-19
 India hCoV-19/India/TG-CCMB-AA586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6541T C6573T G8027T C14408T A23403G A24367G C25528T G26109T C26895T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539650
 2020-08-12 2020-09-19
 India hCoV-19/India/TG-CCMB-AA589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6541T C6573T G8027T C14408T A21550C A23403G A24367G C25528T G26109T C26895T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539655
 2020-08-12 2020-09-19
 India hCoV-19/India/TG-CCMB-AA669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A G6077T C6573T C14408T C19524T A23403G C25528T G26730C GGG28881AAC G29422T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539670
 2020-08-12 2020-09-19
 India hCoV-19/India/TG-CCMB-AA524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G1784T C3037T C4331T G4354A C6573T G9856T C11008T C14408T C19145T AA21550CT A23403G C25528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539686
 2020-08-12 2020-09-19
 India hCoV-19/India/TG-CCMB-AA608/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G124A C241T C313T C3037T C3990T C5700A G6476T C9693T C10815T C14408T C16626T C18744T AA21550CT A23403G C25587G G28628T GGG28881AAC G29474T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539719
 2020-08-12 2020-09-19
 India hCoV-19/India/TG-CCMB-AA591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G61T C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T G19947T AA21550CT A23403G G23873T G27762C GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539733
 2020-08-12 2020-09-19
 India hCoV-19/India/TG-CCMB-AA616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G167C C241T C3037T G4136T G4354A C5784T C5986T C6573T C10029T C14408T G16153A C21365T G22801T A23403G G23587T T25473G C25528T G28817T G28851T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539734
 2020-08-12 2020-09-19
 India hCoV-19/India/TG-CCMB-AA713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G167C C241T C3037T G4354A C6573T T8176C C10029T C14408T G16153A C21365T G22037T G22801T A23403G G23587T C25528T G28817T G28851T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539760
 2020-08-12 2020-09-19
 India hCoV-19/India/TG-CCMB-AA636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C1473T C3037T C5700A G11670A A13211G C14408T A21550C T21745C C21859T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_539816
 2020-08-12 2020-09-21
 China hCoV-19/Hong Kong/VM20106598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539847 MW020084
 2020-08-12 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1653/2020
 ATTA1- C241T C3037T C7518T C14408T T15993C C18486T A20268G T22162C A23403G C27590T C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_541922
 2020-08-12 2020-09-23
 Spain hCoV-19/Spain/MD-IBV-99007150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_547693
 2020-08-12 2020-09-24
 United States hCoV-19/USA/MN-GMF-14999/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C4686T G8314A A10323G G11083T C14408T T15276A A23403G G25563T G28842T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547695
 2020-08-12 2020-09-24
 United States hCoV-19/USA/WI-GMF-15024/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C40Y C241T C715T C1059T G1957T C3037T C11916T C14408T A23403G A23586G G25563T CTG28893AAA ACGATCG29749- TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_547696
 2020-08-12 2020-09-24
 United States hCoV-19/USA/MN-GMF-15040/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G2035T C3037T T3532C T9022C C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547697
 2020-08-12 2020-09-24
 United States hCoV-19/USA/WI-GMF-15072/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T T1592C C2416T C3037T C6113T C14408T T16530A G21372T A23403G G25563T C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547705
 2020-08-12 2020-09-24
 United States hCoV-19/USA/MN-GMF-M00029/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C4686T G8314A A10323G G11083T C14408T T15276A A23403G G25563T G28842T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547977
 2020-08-12 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548596
 2020-08-12 2020-09-26
 United States hCoV-19/USA/CA-CZB-4039/2020
 ATTA1- C241T C1059T G2458T C3037T C7834T G11083T G11108T C11379T C14235T C14408T C14599T T17688C A23403G G25563T G28812T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_548597
 2020-08-12 2020-09-26
 United States hCoV-19/USA/CA-CZB-4043/2020
 AT1- G242K A2251G C3037T G13459T G14055T C14408T C15738T A20268G T20367C C20759T G21746C A23403G T24076C T27422C G28079T C28854T G29414T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_548620
 2020-08-12 2020-09-26
 United States hCoV-19/USA/CA-CZB-4089/2020
 ATTA1- C241T C1059T C3037T C10401T C11941T C14408T C15024T C16260T G17058T A23403G C23481T G25563T G27589A C27879T C28821A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_548622
 2020-08-12 2020-09-26
 United States hCoV-19/USA/CA-CZB-4042/2020
 A1- T76W C241T G2305T C3037T G11083K G13858T C14408T C17410T C17825Y A20268G C20759T A23403G C23896T T24076C C25156T C25578T C27526Y C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_549164
 2020-08-12 2020-09-28
 Norway hCoV-19/Norway/3146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3140T G3340T C3695T C5822T C14408T A23403G C28253T GGG28881AAC G29781T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549166
 2020-08-12 2020-09-28
 Norway hCoV-19/Norway/3147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562610
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC11095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C8650T C14408T G16647T A17337G C18555T C22858T G22992A G23401A A23403G -25700CCC GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562902
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC10402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563161
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC10944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29744K ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563245
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC11099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T C14645Y G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563247
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC11101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563248
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC11102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563249
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC11103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563251
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC11106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563252
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC11109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A12250G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563397
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC11496/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C8389T A10155G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29366Y CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564764
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC7948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24912T C26882Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564783
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC7976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564785
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC7978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G23426K GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564786
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC7979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T C19152T G20489T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564791
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC7986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564799
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C934Y A1163T C3037T T7540C T7582Y T10717C C14408T G16647T C18555T G22992A G23401A A23403G C27925Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564804
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8016/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T C4784T T7540C C14408T G15594T A16233R G16647T C18555T G22992A G23401A A23403G C27335M GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564805
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T T1429Y C3037T T7540C C10798Y C14408T G16647T G17790K C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564810
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C G13762A C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G T25310W GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564811
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C13019Y C14408T G15327K G16647T C18555T A20015R G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564817
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564818
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C13019Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564819
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26464A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564820
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C C28657T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564821
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8053/2020
 ATTAAAGGT1- C241T G669R A1163T C3037T T7540C C8917T C14408T G16647T C18555T G22992A G23401A A23403G G27506A GGG28881AAC G29692T G29777T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564840
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C7735Y C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G G23587R GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_564856
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564857
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T A21551G G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564858
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564880
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564882
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564932
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564939
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564940
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C13019Y C14408T G16647T C18555T C21846T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564943
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C1238T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564949
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G526T A1163T C3037T G5305C T7540C C9996T T11278C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564955
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6033Y T7540C A14084R C14408T G16647T C18555T C18568Y G22992A G23401A A23403G C23457M C23707Y C26165M T26551Y T27785Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564963
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T GT5743SY GG5765RS T7540C T11212Y C14408T G16647T C18348Y C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564968
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564969
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T A7062R T7540C C11497T C14408T G16647T C18555T A22007R G22992A G23401A A23403G G25660K T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564972
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564973
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G C26895Y GGG28881AAC G29701K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564974
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C203T C241T A1163T C3037T GT5743SY T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564975
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C11494Y C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A C26313Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564976
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C635Y A1163T C3037T G3114T GT5743SY T7540C C7788T C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564979
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T GT5743SY T7540C G8861A G11083T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564980
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564981
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T C21575T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564983
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27412G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564984
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C1722T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC G29140K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565133
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC8660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C G9431R C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565371
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC9044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3114T G4907T GT5743SY T7540C C14408T G16647T C18555T A20475R C22480T G22992A G23401A A23403G C27059T C27654T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565540
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC9413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565642
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC9664/2020
 ATTAAAGGT1- T13C C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC G29072T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565731
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC9812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G558K G660K G663K A1163T G2604K C3037T C3505Y G3564K G4505K G5155K G5375K C6468Y G6483K G7017K G7038K G7214K T7540C G8790K G9141K G9249K G10796K G11392K G11535K G12164K G12795K G13240K G13571K A14084G C14408T G16647T G17096K G17848K C18555T G21123K G22899K G22992A G23401A A23403G C23525T C23707T G24557K G24933K G26262K T27785C G28079K GGG28881AAC G29779K G29781K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565736
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC9832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T G558K A1163T C3037T G3564K G7038K T7540C C9996T C14408T G16647T C18555T G22992A G23401A A23403G G24933K A28792G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565738
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC9835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G558K G663K A1163T C3037T G3564K C6033T G7038K T7540C G9249K G11392K G12164K C14408T G16647T C18555T C18568T G22992A T23112Y G23401A A23403G C23457A C24026T G24557K G24933K G28079K GGG28881AAC C29774T G29781K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565750
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC9866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24912T T27941C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565753
 2020-08-12 2020-09-30
 Australia hCoV-19/Australia/VIC9871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T G1535A C3037T T7540C C14408T G16647T T18509G C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_566027
 2020-08-12 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T A5106C G8006A C9907T A10042G T12094C C14408T C18189T C18246T A23403G GGG28881AAC A28898G G29734A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_569067
 2020-08-12 2020-10-02
 France hCoV-19/France/IHU-1162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T G5378A C14408T A20268G C22088T G22583A G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569181
 2020-08-12 2020-10-02
 France hCoV-19/France/IHU-1505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T445C C3037T G4006T C5170T G5504A C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569182
 2020-08-12 2020-10-02
 France hCoV-19/France/IHU-1509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28086T G28975C G29399A ATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29790-

EPI_ISL_569185
 2020-08-12 2020-10-02
 France hCoV-19/France/IHU-1519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T A3344G C4320T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569186
 2020-08-12 2020-10-02
 France hCoV-19/France/IHU-1521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28086T G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569187
 2020-08-12 2020-10-02
 France hCoV-19/France/IHU-1523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G C22088T G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569188
 2020-08-12 2020-10-02
 France hCoV-19/France/IHU-1524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T G22604T A23403G G25563T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_516820
 2020-08-13 2020-08-24
 Singapore hCoV-19/Singapore/820/2020
 ATTAAAGGTTTATACCTTC1- C241T C3037T T3533Y G11083T C11941T C13051T C14408T G16853T C16859T C21597T C22855T A23403G A27224C GGG28881AAC C29144T AAAAAAAAAAAA29892-

EPI_ISL_516993
 2020-08-13 2020-08-24
 United Kingdom hCoV-19/England/CAMB-1B5B17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C15656T G19542T C19718T C22388T A23403G C25613T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516995
 2020-08-13 2020-08-24
 United Kingdom hCoV-19/England/CAMB-1B5B35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C25613T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516996
 2020-08-13 2020-08-24
 United Kingdom hCoV-19/England/CAMB-1B5B44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C25613T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_516999
 2020-08-13 2020-08-24
 United Kingdom hCoV-19/England/CAMB-1B5B71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1620G T2236C C3037T G3918A C4002T T5590C TCTTACTAT6577- A6604G C9438T G10097A G10700A A11770G T13527C C13536T C14408T G15814A A17207G G21600T T21752G C22550T A23403G C23731T G25033A C26299A C26333T C26895T C27059T T27618C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517000
 2020-08-13 2020-08-24
 United Kingdom hCoV-19/England/CAMB-1B5BAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1620G T2236C C3037T G3918A C4002T T5590C TCTTACTAT6577- A6604G C9438T G10097A G10700A A11770G T13527C C13536T C14408T G15814A A17207G G21600T T21752G C22550T A23403G C23731T G25033A C26299A C26333T C26895T C27059T T27618C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517543
 2020-08-13 2020-08-24
 United Kingdom hCoV-19/England/SHEF-C0D05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T A9339G C14408T C17766T C21637T A23403G T27479C A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518819
 2020-08-13 2020-08-25
 Indonesia hCoV-19/Indonesia/TNG-LIPI001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2785C C2798T C3037T A4429G C14120T C14408T C18877T T19664C A21626C G22992T A23403G G25563T C25708T C26735T C28332T C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522882 MT929107
 2020-08-13 2020-08-26
 United States SARS-CoV-2/human/USA/MN-UW-1130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A A8879G C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522885 MT929104
 2020-08-13 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C19979A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522886 MT929105
 2020-08-13 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C19979A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522887 MT929106
 2020-08-13 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C19979A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522890 MT929110
 2020-08-13 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C19979A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522896 MT929116
 2020-08-13 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C21304T A23403G G25563T G25907T C27964T C28472T G28857T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522898 MT929118
 2020-08-13 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C5020T C6285T C12855T C14408T C19524T C20429T A23403G G27788C C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522899 MT929119
 2020-08-13 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C19979A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522909 MT929130
 2020-08-13 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G A25864G T27901C C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_522914 MT929135
 2020-08-13 2020-08-26
 United States SARS-CoV-2/human/USA/WI-UW-1158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1593T C3037T C10319T C11308A C14408T G22468T A23403G G25563T C27964T G28939T G29690A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523902 LR880619
 2020-08-13 2020-08-27
 Switzerland 240062
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A3008W C3037T C3117Y T3144K G3638R T5322W A5563R G10265A C14408T C15720T A15972G C18928Y C19718T C21364Y A23403G G25249T G26700T T28759Y GGG28881AAC G29348T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523903 LR880623
 2020-08-13 2020-08-27
 Switzerland 240063
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C10582T G11083T C14408T A20268G A23403G C25731T G28703C C28833T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523905 LR880613
 2020-08-13 2020-08-27
 Switzerland 240065
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C337Y G2927S C3037T A3054W G3066K G3107R T6991Y G9130T C14408T C16887T C22450T A23403G T27319C G28487A C28868T GGG28881AAC G29468T C29632T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523906 LR880627
 2020-08-13 2020-08-27
 Switzerland 240066
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2942M T3011Y C3037T C3738T C5144Y G7010S T7022K G9130T C10039Y G11083K C14408T C15540T G16065T C16111T A16775R A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523925 LR880643
 2020-08-13 2020-08-27
 Switzerland 240090
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C815T A2979W C3037T T3144K A3581M G3606R G3639K A3690M C6286T T6923Y T6949W T6959W C14408T G21255C C22227T A23403G C26801G C28932T G29645T G29779T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_523926 LR880633
 2020-08-13 2020-08-27
 Switzerland 240091
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G11083T C11139T G11842A A12759G C14408T G18292T A20268G G20853T A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_525433
 2020-08-13 2020-08-29
 Ecuador hCoV-19/Ecuador/USFQ-182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C14408T A14747G C16658T A20755C A23403G G25563T

EPI_ISL_525434
 2020-08-13 2020-08-29
 Ecuador hCoV-19/Ecuador/USFQ-183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTA1- C241T C3037T C4002T T4092C G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_526525
 2020-08-13 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB7274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11771A G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526533
 2020-08-13 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB7359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528479
 2020-08-13 2020-09-07
 Ireland hCoV-19/Ireland/72IRL19153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528480
 2020-08-13 2020-09-07
 Ireland hCoV-19/Ireland/72IRL19451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G T26494G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528481
 2020-08-13 2020-09-07
 Ireland hCoV-19/Ireland/72IRL19573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T C25413T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528482
 2020-08-13 2020-09-07
 Ireland hCoV-19/Ireland/72IRL21078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_528483
 2020-08-13 2020-09-07
 Ireland hCoV-19/Ireland/72IRL21404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C5301T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529622
 2020-08-13 2020-09-10
 United Kingdom hCoV-19/England/BIRM-62813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529623
 2020-08-13 2020-09-10
 United Kingdom hCoV-19/England/BIRM-62831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G24040T G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529737
 2020-08-13 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1213T C2094T C3037T T7168C C10341T C14408T G16853T A23403G C23991T C28849T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_529742
 2020-08-13 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002746/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C4002T A4494G C9866T C9967T G10097A C13536T C14408T C18747T A23403G C23731T G26389T GGG28881AAC G29425T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_530146 MT997225
 2020-08-13 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2789/2020
 ATTAAAGGTTTATACCTT1- C241T C1059T T1927C C3037T C10319T C14408T A18424G C21005T C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_530147 MT997218
 2020-08-13 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2790/2020
 ATTAAAGGTTTAT1- C241T C1059T T1927C C3037T C10319T C14408T A18424G C21005T C21304T A22255T A23403G G25563T G25907T C27964T C28472T C28869T A29257C AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_530803
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T C16375T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530804
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C3F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530810
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A21163G A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530814
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C1E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530815
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C4FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T G16700T C18568Y C21234T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530824
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530829
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T C26885T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530831
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C19D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10933C G11447A C14408T C21648T A23403G C25728T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530833
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C4B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T G25690T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530848
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C32E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T A6625G C9246T G11083T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530850
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5434C C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530854
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5000T C9430T G10540T T11737C C12823T T14289A C14408T A16920C A23403G C27092T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530860
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C3E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530864
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C4A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530865
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C43A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530867
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C1AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T C8299T C11020T C11095T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T T28406A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530872
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C35B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A309G T772C T1905C C2005T A2869G C3037T G6352T C6445T C10868T C14408T C14741T G15652T A23403G G23438T G26062T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530878
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C40D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530879
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14403T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530882
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530886
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T G16700T C21234T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530890
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C31F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530903
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C33D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G G25699K C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530911
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C5EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G17019T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530916
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969F4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C8293T A10323G C14408T C15848T C16084T C19862T T19893C C21381T C23029T A23403G C26625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530922
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1581C C3037T C4931T C7006T A14004G C14408T T19893C A23403G G25981T G26526T GGG28881AAC G29628T C29738T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530924
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C4D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530926
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C24F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T T14313C C14408T G15652T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530927
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A8A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T C11020T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530933
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C546/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530939
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T A8086G A9433T TAT9858- G10265A C12919T C14408T A19650G A23403G G24193T T24499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530944
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530970
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96504C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530974
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96497F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530981
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964D91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530986
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-964AC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530991
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964C0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530994
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9649BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T C18129T C18788T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530998
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964FAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C G27962T C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531034
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96503D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531038
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-964AB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1648Y C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531041
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9649AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531042
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964BE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531043
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96505B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A21163G A23403G A25235T T25257C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531047
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-964F6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531049
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-965079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14322T C14408T G19542T C19718T C22388T C22687T A23403G C25613T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531052
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-964AD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C15712A C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531053
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-964F40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C15720T A15972G C19718T A23403G G26700T T28510C T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531064
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964BF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531072
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-965097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531077
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T C18129T C18788T G19648T A20268G T21158C T22555Y A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531079
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-964D46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531098
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-964E34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T T13417C C14408T A23403G G24197K A24782G A25235T G25855K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531099
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96498E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A G11851T C13887T C14408T C21639T G21724T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531103
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-964F22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G8102T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531111
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-965431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A21163G A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531122
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-964CEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25244T G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531124
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96499D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531125
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964D73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531128
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-964E70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531130
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-964E61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531134
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-965194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531142
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-964951/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A G11851T C13887T C14408T C21639T G21724T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531146
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964DA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531154
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96506A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531156
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-964F8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C26889T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531161
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964FF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531167
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964B88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531168
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-964E07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A21163G A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531184
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-964F04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A21163G A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531193
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96501F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T C10332T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531194
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-964E52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T G19086T T20661C G21255C C22227T A23403G C26801G C26810T G28373T C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531196
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531197
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-964E8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A A4414C G8120C C14408T C15738T T19839C C21646T A23403G A24205T GTT26155- G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531199
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9657DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T A1146G C2091T C3037T C5654T A6030G C14408T C19269T G19563A A23403G C24381T C25708T GGG28881AAC G29628T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531214
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-964D82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T595C C3037T A8244G G8408A G12191T C14408T C19488T C21622T A23403G T26171A C28500T GGG28881AAC G29254A C29409T G29474T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531222
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-964FE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531288
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T AGA20622TTT A23403G C23730T G25563T C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531299
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BAB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531353
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BE6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20703T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531354
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B34D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G2164A C3037T C3369T C6573T C7113T A10991G C13730T C14408T A23403G C25516T G25681C G28396A GGG28881AAC A29549T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531358
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BBAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T T2318Y C3037T C4002T G6622C C9474T G10097A C13536T C13730T C14408T G18756K T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531359
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AC9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531399
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BEF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531440
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BF58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T G11083T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531444
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BCCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C1514T C3037T C3619T C5100T G6127A C7051T C7303T C8964T G11083T C14408T A23403G G25314T G25352A GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531463
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C5907T C13247T C14408T C14937T T18144C A23403G C23435Y C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531467
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A7D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531468
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A40F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531469
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A4D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2549A C3037T C14408T A23403G G25617T G26951K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531497
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G17749T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531498
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2676T C3037T C4391A C11124T C14408T G14792T C15848T C15857T G19254T T19893C A21137G G22335T A23403G C25889T G27217A G28396A GGG28881AAC C29144T G29321T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531501
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C G1820A C3037T T3508A C6286T C13671T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531505
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A7F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5434C C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531507
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A6FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531511
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A5A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A G11906T C13643T C14408T C21648T A23403G G26458K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531513
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A5FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T G24626T C25000T C26111T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531517
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A4C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3403T G4181T G5326T C5691T C5694T C5812T C6573T C14408T C16293T G22021T A23403G T23633G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531520
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T C10376T A10978T C14408T C17104T A19958G A20268G T20799C C22879A A23403G G24770T C26681T C28507T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531528
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2969G C3037T C4002T C7471T G10097A C12525T C13536T C14408T C16376T A23403G C23731T C24912T G27226T C27970T G28280T A28624T GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531529
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A6AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G C26191T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531530
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531534
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531537
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A4A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T G9332T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531544
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A44B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T C11020T C11095T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531551
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A4B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T C22227T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531553
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A5DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T A10978T C11752T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531558
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T C8299T C10908Y C11020T C11095T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531561
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20019G T22358C A22681T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531570
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96A672/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G8548A T13788C G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531571
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531573
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A51B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2969G C3037T C4002T C7355T C7471T G10097A C12525T C13536T C14408T C16376T A23403G C23731T C24912T G27226T C27970T G28280T A28624T GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531578
 2020-08-13 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534256
 2020-08-13 2020-09-11
 Sweden hCoV-19/Sweden/20-52588/2020/P1
 C241T G2527A C3037T G3259T C5002T C9286T C14408T A23403G G23593C A23851G G25644T C26447T GGG28881AAC C28887T

EPI_ISL_534375
 2020-08-13 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96512B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T A25817G G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534383
 2020-08-13 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-964757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T C15720T G21255C C22227T A23403G T26609C C26801G T28062C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534387
 2020-08-13 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-964739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534394
 2020-08-13 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-964748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C9430Y C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534397
 2020-08-13 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-9647A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C556Y A1678C C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC C29197T G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534402
 2020-08-13 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-9650F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A21163G A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534404
 2020-08-13 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96A1BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C24023T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534643
 2020-08-13 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-964B3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T G2210A C3037T T3256C C5622T G14202T C14408T C15600T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536820
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A1EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1190T G2035T C3037T G8102T A13949G C14408T C18744T A18978G A23403G G25563T A29391G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536868
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-9650D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A A4414C G8120C C10448T C14408T C15738T T19839C C21646T A23403G A24205T GTT26155- G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536870
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-96510D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G C27686T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536893
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-965158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536894
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/England/QEUH-964818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536898
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-965149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536904
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A3B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C13887T C14408T C21639T A23403G C23731T GGG28881AAC C29386A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536918
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-96511C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A143R C241T C3037T G3242A G8120C C14408T C15738T C16887T T19839C C21646T A23403G C24034T A24205T C25613T C26208T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536919
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A29C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C15654T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536928
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A0A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G8084A G10886A A12259G T13417C C14408T G17278T C18032T G18105T G18662C A23403G C23625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536929
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536933
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/Northern Ireland/QEUH-9650C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536939
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8203G G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536940
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A2D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T G21255C C22227T A23403G C26801G C26873T C27944T G28286A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536944
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9651A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C10582T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536945
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C10376T C14408T G18782T G21255C C22227T G22346T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536953
 2020-08-13 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C936T C1960T A2440G C2570T C3037T C5301T T10330C G11083T C13247T C14408T C14937T T18144C A23403G C26681T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539635
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AB395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6026T C6573T C14408T A23403G C25528T C25549T C28528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539636
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6026T C6573T C14408T C23230T A23403G C23896T C25528T C25549T C28528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539637
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AB358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6026T C6573T C13059T C14408T G20208T A23403G C25528T C25549T C28528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539653
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A A4490G C6573T G7641A A13488G C14408T G19542T A23403G C25528T G26257A GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539666
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AB397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C225T C241T G1598T C2325T T2845C C3037T G4354A A4607G C6573T A12547T C14408T C18570T A23403G C25528T GGG28881AAC G29254T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539669
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1767G C3037T C7267T G8017T C8917T G9389A C14408T G17721T A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539671
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A A6034T C6573T C7749T C10340T C14408T C17690T C18029T AA21550CT G21770T A23403G C25528T C26335T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539674
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1912T C3037T G4354A C6573T A7450G C9286T C14408T C16260T G20274T AA21550CT A23403G C24904T C25339T C25528T G28378T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539678
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- A143G C241T C3037T G3774A G4354A C6573T GG7115AA C7390T G11083T C11606T C14408T C19707T A23403G C25528T C25693T C28770T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539693
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C9693T C10815T G11417T C14408T C16626T C19875A A23403G GGG28881AAC G29474T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539695
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A4372G C4543T C5700A C9693T C14408T C16626T A23403G C28045T GGG28881AAC G29648T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539696
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A4372G C4543T C5700A C9693T C14408T C16626T A23403G C28045T GGG28881AAC G29648T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539697
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A4372G C4543T C5700A C9693T C14408T C16626T A23403G C28045T GGG28881AAC G29648T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539698
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A4372G C4543T C5700A C9693T C14408T C16626T A23403G C28045T GGG28881AAC G29648T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539699
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T A23403G A27797G GGG28881AAC G29648T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539707
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AB401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T T17589C C19391T G19947T A23403G G23873T G27762C GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539718
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AB344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A4372G C5700A C9693T C14408T G16558A C16626T G17808T G19398T A20898T AA21550CT A23403G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539722
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C14408T A15085G G17721T G20922T AA21550CT A23403G G25690T T28094C GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539731
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G185T C241T C313T C3037T C5700A T9145C C9693T C14408T C16626T AA21550CT A23403G G23593T G25650T G25996T C27331T C27416A GGG28881AAC G28904T G29402T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539732
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G185T C241T C313T C3037T C5700A T9145C C9693T C14408T C16626T A23403G G23593T G25650T G25996T C27331T C27416A GGG28881AAC G28904T G29402T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539747
 2020-08-13 2020-09-19
 India hCoV-19/India/TG-CCMB-AA812/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C1419T C1616T C3037T A4372G C5700A C9693T C14408T C16626T T18510C G19947T G21770T A23403G G23873T G27762C GGG28881AAC C29572T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539818
 2020-08-13 2020-09-21
 China hCoV-19/Hong Kong/VM20107470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G C28531Y GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539819
 2020-08-13 2020-09-21
 China hCoV-19/Hong Kong/VM20107468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547969
 2020-08-13 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_547972
 2020-08-13 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_547973
 2020-08-13 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_547974
 2020-08-13 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_547975
 2020-08-13 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G C23191T A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_547976
 2020-08-13 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548101
 2020-08-13 2020-09-25
 New Zealand hCoV-19/New Zealand/WKO-ESR-20VR3919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548257
 2020-08-13 2020-09-25
 Sweden hCoV-19/Sweden/20-52643/2020
 C241T GGTCTT1598- C3037T C6636T C12781T C14408T C16887T A23403G G25049T G27390T GGG28881AAC G29291T

EPI_ISL_548634
 2020-08-13 2020-09-26
 United States hCoV-19/USA/CA-CZB-4091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACG1- C217Y C241T G1820T G2946A C3037T C10626T C14408T C14599T A20268G A23403G C28854T A29382W TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_548640
 2020-08-13 2020-09-26
 United States hCoV-19/USA/CA-CZB-4090/2020
 A1- C241T C3037T A3829G C14408T A20055G A20268G C21575T A23403G C23934T C24897T C28854T AGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAAT29735- AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548679
 2020-08-13 2020-09-26
 United States hCoV-19/USA/CA-CZB-4045/2020
 ATTA1- C241T A2251G C3037T C5093Y G13459T G14055T C14408T C15738T A20268G T20367C C20759T G21746C A23403G T24076C T27422C C28854T G29414T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_549033
 2020-08-13 2020-09-28
 Norway hCoV-19/Norway/3203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A2238G C3037T C5170T CC6285TT C10519T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549200 MW040628
 2020-08-13 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1418/2020
 ATTAAAGGTTTA1- C241T C2416T C2878T C3037T C7528T C14408T C16616T C21207T C21380T A23403G G25563T C26885T C27603T C28887T C29445T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_562600
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC10480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T C16222T G16647T A17337G C18555T C22858T G22992A G23401A A23403G C24034T -25700CCC GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_562662
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3656T T7540C C14408T G15594T G16647T T17007Y C18555T G22992A G23401A A23403G C25509Y C25642Y C28377T GGG28881AAC GAATGGCTG28899- TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562663
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_562664
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T AAGTCATTT686- A1163T C3037T T7540C C13011Y C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562666
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C G25244T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562677
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC9425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562686
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC9868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562706
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22118G G22992A G23401A A23403G TTA27698- GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562808
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC10147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562833
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC10232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T C14919T G16647T C18555T G22361R C22498T G22992A G23401A A23403G A26162G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563308
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC11241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C1263T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G G28817T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563309
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC11243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563776
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC13600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1263T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G G28817T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563777
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC13601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1263T C3037T T7540C T10717C C11020Y C14408T G16647T C18555T G22992A G23401A A23403G C28253Y G28817T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563780
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC13604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1263T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G G28817T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563799
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC13656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563805
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC13671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C2433Y C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G A25531R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564782
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC7974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C9474T C9679T C10369T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564787
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC7980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25936T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564788
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC7982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C9491T C14408T G16647T C18555T C19011T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564790
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC7985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G4080A C4301T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564797
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC7997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G C27673Y GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564798
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC7998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564803
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564807
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C13458T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564808
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29347T G29692T G29777T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564813
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564815
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5031Y A5949R T7540C C13019Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29742K TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564822
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14053Y C14408T G16647T C18555T T22315C G22992A G23401A A23403G C24382T GGG28881AAC C29774T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_564839
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T C15928T G16647T C18555T C20544T G21159A C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564841
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T8719C C13274T A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564883
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C9491T C14408T G16647T A17337G C18555T G18854T A20112C G20433A G22992A G23401A A23403G C23655T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564884
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A5949R T7540C C13019Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564886
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2878Y C3037T T7540C T8719Y C13274T A14084G C14408T G16647T C18555T C19862Y G22992A G23401A A23403G C23707T T27785C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564887
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564888
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T G27556R C28087T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564889
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C920T A1163T C2003T C3037T A4405R T7540C G13762A C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G C25006T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564890
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564892
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C1263T C3037T T7540C T10717C C14408T G16647T C18555T G22992A C23117Y G23401A A23403G C25413T G28817T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_564893
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_564894
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A3372G T7540C C14408T G16647T C18555T T19500C G22992A G23401A A23403G A25137C T26773C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564904
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3860T T7540C C14408T C15352T G16647T C18555T C21812T G22992A G23401A A23403G G24992C A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564938
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22315C G22992A G23401A A23403G C24382T GGG28881AAC C29774Y ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564944
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T3043C T7540C C9996T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564946
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564948
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C9996T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564950
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T3043C T7540C C9996T C13138Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564977
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1722T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC G29140K AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565134
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC8661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C1780T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565541
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC9416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565542
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC9420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C4115T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565600
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC9556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G22992A G23311T G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565601
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC9558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565641
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC9662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565733
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC9816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3345A T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565748
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC9864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14016T C14408T G16647T A18141G C18555T C22202A G22992A G23401A A23403G C23895T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_565749
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC9865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C9996T C10226Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565752
 2020-08-13 2020-09-30
 Australia hCoV-19/Australia/VIC9870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_566066
 2020-08-13 2020-10-01
 United Kingdom hCoV-19/England/203420511/2020
 ATTAAAGGTTTATACCTTCCC1- C241T A1371G C1385T C3037T C9532T C11224T C14358T C14408T C16323T A19175C C19586T A20268G C22987T A23403G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_569068
 2020-08-13 2020-10-02
 France hCoV-19/France/IHU-1164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28086T G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569190
 2020-08-13 2020-10-02
 France hCoV-19/France/IHU-1527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569191
 2020-08-13 2020-10-02
 France hCoV-19/France/IHU-1529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T A26771G T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569193
 2020-08-13 2020-10-02
 France hCoV-19/France/IHU-1548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G C25521T G25563T G27632T C27804T C28830A G29402T G29779T GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_525435
 2020-08-14 2020-08-29
 Ecuador hCoV-19/Ecuador/USFQ-184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T G3403T C14408T A23403G A26530G

EPI_ISL_525438
 2020-08-14 2020-08-29
 Ecuador hCoV-19/Ecuador/USFQ-MC01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2987C C3037T A3215G C14408T G15438T A20268G A23403G

EPI_ISL_526534
 2020-08-14 2020-09-01
 United Kingdom hCoV-19/Scotland/EDB7360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T T2083G C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_527630 MT958262
 2020-08-14 2020-09-03
 United States SARS-CoV-2/human/USA/MN-MDH-1565/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C5339T C5893T C6040T C8140T C8208T G14371T C14408T C16260T A23403G A25167T G25440T G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_529720
 2020-08-14 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002717/2020
 AT1- C241T C1427T C3037T T3049C G10523A C14408T G21724T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_529726
 2020-08-14 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002727/2020
 C241T C3037T C6762T T12503C C14408T A23403G T24565C C25487T G25770T GGG28881AAC C29721T G29736A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529728
 2020-08-14 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C7728T T12503C C14408T A23403G C25516T A25964C GGG28881AAC C29721T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529735
 2020-08-14 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002737/2020
 ATT1- C241T C3037T C3602T C5869T A10323G T12503C C14408T A23403G A23534G G25770T GGG28881AAC C29721T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_529736
 2020-08-14 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C5284T C14408T G20208T A23403G C23644A C28005T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_529747
 2020-08-14 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002751/2020
 ATT1- C241T C3037T G11447A C14408T G20668A C22675T A23403G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_529752
 2020-08-14 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002756/2020
 AT1- C241T C1469T C3037T C14408T T17351C A20268G C21846T G22132A A23403G G27659T A28211G G29751C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_530148 MT997241
 2020-08-14 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2791/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G12694A C14408T C16260T C21642T A23403G G25563T A26945G C28821A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_530149 MT997213
 2020-08-14 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2792/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T T1927C C3037T C10319T C10626T C10755T C14408T A18424G C21304T C21727T A22255T A23403G G25563T G25907T G27014T C27964T C28472T C28869T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_530150 MT997220
 2020-08-14 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2793/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T T1927C C3037T C10319T C10626T C10755T C14408T A18424G C21304T C21727T A22255T A23403G G25563T G25907T G27014T C27964T C28472T C28869T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_530151 MT997233
 2020-08-14 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2794/2020
 ATTAAAGGTTTATAC1- C241T C1288T C3037T C11575T C14408T G14857T C18060T G18523T A20268G G22487C A23403G C26885T C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_530170 MT997692
 2020-08-14 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1574/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C16260T A23403G G23900C A24253T G25563T C28821A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530459
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F40A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11931T C14408T C18928T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530809
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969DBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530830
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969EA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T T9070Y C11152T C14408T T17742C A23403G C26058T GGG28881AAC A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530835
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969C53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T C19545T A20268G T20799C C22879A A23403G C26408T G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530849
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C1CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C3787T C5175T C6401T C14408T C16084T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530857
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969D6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C20283Y C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530870
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969D50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530880
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969E02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22346T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530884
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969D8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530893
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969DD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530894
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969D14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2135T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530908
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A85E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G T23986C G25563T C26735T C28253Y C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530919
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A8E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2841T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530935
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530941
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969E20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C11758T C14408T C15738T T19839C C21646T A23003G A23403G A24205T G28083T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530946
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969DE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T C16428T T19839C C21635T C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530948
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969E5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530951
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96993E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530953
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-969637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C6807T G14202T C14408T G19542T C19718T C22388T A23403G C25282T -25700CCC C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530959
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-969831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T595C C3037T A8244G G8408A G12191T C14408T C19488T C21622T A23403G T26171A C28500T GGG28881AAC G29254A C29409T G29474T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530961
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-965729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C13721T C14408T A15477T C16716T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530968
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9657CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T A17757R G19542T C19718T G20893K C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530973
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-965774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530979
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-965792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530980
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9699A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23003G A23403G A24205T G28083T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530982
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9699D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530983
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-969646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G6653T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530988
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9699C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530997
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9659BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925R G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531000
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9697AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531006
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96549B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28312T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531014
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96978F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C6114Y G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC C29171Y G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531020
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-965765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531030
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T T13417C C14408T A23403G A24782G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531032
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9697E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531033
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96986E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C6543Y G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531040
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-969707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T G2198A C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531048
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9697DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C8112T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C27643T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531054
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-969840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531055
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9699F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531057
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9696CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2644A C3037T C5221T T7767C C7844T C8047T C14408T C17104T A20268G C22879A A23403G T24925C C26985T C27800A C27920T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531063
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96996B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T A12755G C14408T C15495T A23403G G24812T C26895T G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531075
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-965914/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C884T G2890T C3037T C4551T C8836T G10642T C14408T C17766T C18877T C22000A C22444T A23403G C24130T C24138T G25563T G25785T C26735T G27987T C28163T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531085
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9697CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531091
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-969549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C26889T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531095
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A C4554T G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531100
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9698C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C26889T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531104
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-965589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531105
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969A59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T T17136C A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531107
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-969813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446K G8120C G9049K C9943Y C14408T C14805Y C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531113
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9695FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T G20893T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531118
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-969822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C11644T C14408T A18223C G18225A T18228A C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531120
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96995C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531126
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9654C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1678C C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC C29197T G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531129
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-969691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1107C C3037T A4687G C6696T C9430T C14408T T18083C C18568T A23403G G28395T A28581G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531147
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9654E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C15712A C21302T CG21304AA A23403G C27155Y GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531155
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9657A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531166
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96548C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531174
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9695C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C5178T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531175
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9698B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C26889T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531183
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9696BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531189
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-969743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531212
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-969725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2135T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G23856T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531215
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9695EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531220
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9698AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T C16443T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531227
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BCAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5000T C9430T G10540T T11737C C12823T T14289A C14408T A16920C A23403G C27092T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531232
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BDE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C3156T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531236
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B2C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C11956T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531241
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T G11083T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531244
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BB09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3486A C3653T C14408T C15319T C22858T A23403G C25624T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531247
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BE79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531250
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-96BE00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26918T C27297T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531254
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BCF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531255
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AD22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A16569G C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531259
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531268
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AF68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C15546A C21637T A23403G C28000T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531271
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20703T C21575T A23403G T25532C G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531272
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531273
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AEA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3738T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531276
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B41D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C12747Y C14408T A23403G G25775T C27644T C27807T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531278
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531280
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BC7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C3787T C5175T C6401T C14408T C16084T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531282
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B2F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10440T T12145G C14408T C20759T C21676T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531283
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-96BE2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5031T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531284
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BBEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T G16700T C21234T A23403G GGG28881AAC C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531293
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BCD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531300
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BB81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20019G T22358C A22681T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531311
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BA66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531318
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531329
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B4D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T G16852A C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531338
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B43B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531339
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BDA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531341
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BE1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1582C C3037T C14408T C21575T A23403G G26918T C27213T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531344
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G GAT27382CTC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531345
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BB90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531346
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BC15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531348
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1263T C3037T C10755T C14408T C18029T A23403G G25459T G25793T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531350
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531356
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531362
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BF76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531364
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BE88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C12880Y C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531371
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BD03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T G29392K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531373
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BEE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T232C C241T C1314T C2110T C3037T C3817T C6843T C7000T C10755T A11755T C12294T C14408T A17744G C19273T C22591T A23403G T26094C C27684T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531375
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-96B820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3164C T7258C T8941C G12911A C12919T C14408T G15438T A20268G A23403G C29485T G29715T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531380
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B4C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T G16852A C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531385
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B2B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10440T T12145G C14408T C20759T C21676T A23403G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531390
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BE5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G11083T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531392
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AF0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531400
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AD7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G2198R C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531401
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BDC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A20289G A21137G A23403G C25889T G27217A T27384C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531404
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-96BF85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531408
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BB36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T T14313C C14408T C15613T G15652T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531411
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B6F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20019G T22358C A22681T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531419
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BE4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G11083T T14100C C14408T A20268G C21614T A23403G C25831Y C28846T C28854T T28978C C29167T C29730Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531431
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BB72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5571C C14408T G15451A A23403G GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531433
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/Wales/QEUH-96BF94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26918T C27297T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531436
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AD31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531439
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G20302A G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531443
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AE89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C884T G2890T C3037T C4551T C8836T G10642T C14408T C17766T C18877T C22000A C22444T A23403G C24130T C24138T G25563T G25785T C26735T G27987T C28163T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531446
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BFC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C5544T G11083T C14408T C19007T A20268G C21614T C21660T A23403G C24700A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531448
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T T7630C G9805T C14408T C17410T G21255C C22227T A23403G C26801G C27944T C28603Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531453
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5434C C14408T A23403G G25617T G25769R GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531455
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BBBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC C29280T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531457
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B35C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T A8086G A9433T TAT9858- G10265A G11083K C12919T C14408T A19650G A23403G T24499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531459
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BCE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A C11124T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C24422A C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531514
 2020-08-14 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A42D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C3787T C5175T C6401T C14408T C16084T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534646
 2020-08-14 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B36B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A642G T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T A23403G G23438T GGG28881AAC C29095T G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534664
 2020-08-14 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B0DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C21058Y C22388T A23403G C24023T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534666
 2020-08-14 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C884T G2890T C3037T C4551T C8836T G10642T C14408T A15002R C17766T C18877T C22000A C22444T A23403G C24130T C24138T G25563T G25785T C26735T G27987T C28163T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534676
 2020-08-14 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96BD6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8296C C12076T C14408T C18877T G19846A C22227T G22332T A23403G G25563T G28690T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534678
 2020-08-14 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96BA0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8296C C12076T C14408T C18877T G19846A C22227T G22332T A23403G G25563T G28690T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534687
 2020-08-14 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B6CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A642G T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T A23403G G23438T GGG28881AAC C29095T G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535627 LR881914
 2020-08-14 2020-09-15
 Switzerland 250119_893_B08
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C274T T2926Y C3037T A3132R G3671R G6881K T6895Y G6961K T7305K G8696R G8853K C10833T C14408T C15324T C15654T A16210W A23403G C24378T G25526T G28747T G28857T G28917T G29543T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535629 LR881911
 2020-08-14 2020-09-15
 Switzerland 250121_894_F04
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C5175T T6933Y T7035W G11842A A12759G C14408T G18292T A20268G C22987T A23403G C28409Y C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535631 LR881910
 2020-08-14 2020-09-15
 Switzerland 250123_895_G01
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G G27470A C28854T G29044A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535632 LR881920
 2020-08-14 2020-09-15
 Switzerland 250124_895_H05
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1471T C1862T C3037T T3144K G3716K G3720K A3722M A3735R C4331T G5230T G5326R C7765T C10765T C12809T C14408T A16210W A16281W T17500Y C17883T A23403G G25217T G25290K T25999Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535633 LR881916
 2020-08-14 2020-09-15
 Switzerland 250125_896_C02
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A3064R G3080R C3738M G11083K G11842A A12759G C14408T A16210W T17872Y G18292T A20268G A23403G C27503Y C28253T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535634 LR881919
 2020-08-14 2020-09-15
 Switzerland 250126_896_F02
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T2922Y A2979R C3037T C4543T T5471Y G5629T G6884S AA6887MM T6890Y G6894K T7012Y G9526T C11497T G13993T C14408T G15766T A16210W A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_536598 MW035396
 2020-08-14 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C186T C241T T1552C C3037T A3976G A10323G G11083T C14408T C18486T A20268G T22162C A23403G T23857C C25207T C28854T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536602 MW035400
 2020-08-14 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5100T G8083A C10319T C14408T C14805T A18424G G19816T C19979A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536607 MW035405
 2020-08-14 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T C17285T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536609 MW035407
 2020-08-14 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2669T C3037T G8083A C10319T C14408T C14805T C17678T A18424G G19816T C21304T A23403G G25563T G25907T C27689T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536630 MW035428
 2020-08-14 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C186T C241T T1552C C3037T A3976G A10323G G11083T C14408T C18486T A20268G T22162C A23403G T23857C C25207T C28854T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536866
 2020-08-14 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8650T C14408T G20477T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539617
 2020-08-14 2020-09-19
 India hCoV-19/India/TG-CCMB-AB465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2325T C3037T G4354A C6573T A8884G A12547T C14408T A23403G C25528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539627
 2020-08-14 2020-09-19
 India hCoV-19/India/TG-CCMB-AB443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2325T C3037T G4300T G4354A C6573T A12547T C14408T C20719T A23403G G25244T C25528T GGG28881AAC C29724T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539629
 2020-08-14 2020-09-19
 India hCoV-19/India/TG-CCMB-AB520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3330T G4354A C6026T C6573T C14408T AA21550CT A23403G C25528T C25549T C28528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539640
 2020-08-14 2020-09-19
 India hCoV-19/India/TG-CCMB-AB223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6573T A13488G C14408T A23403G C25528T G26951C GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539682
 2020-08-14 2020-09-19
 India hCoV-19/India/TG-CCMB-AB268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1853A T2593C C3037T G4354A G6352T C6573T A11755G C14408T G16377T A23403G G25217T C25294A C25528T G26730C T27384C GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539701
 2020-08-14 2020-09-19
 India hCoV-19/India/TG-CCMB-AB91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A4372G C5700A C9693T C12459T C14408T C16626T C16779T G18948T A23403G G23593T A25958G GGG28881AAC G29227T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539706
 2020-08-14 2020-09-19
 India hCoV-19/India/TG-CCMB-AB16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G61T C241T C313T C2135T C3037T A4372G C5700A C6317T A9377C C9693T C14408T C16626T G19947T A23403G G23873T G24197T G27762C GGG28881AAC A29534G CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539709
 2020-08-14 2020-09-19
 India hCoV-19/India/TG-CCMB-AB182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T G18027T G19947T G22344T A23403G T23754C GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539710
 2020-08-14 2020-09-19
 India hCoV-19/India/TG-CCMB-AB192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C936T C3037T A4372G C5700A C8950T C9693T G12070T C14408T C16626T G19947T A23403G A27662G C28724T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539713
 2020-08-14 2020-09-19
 India hCoV-19/India/TG-CCMB-AB226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T G3871T A4372G C5700A C9693T C14408T C16626T G21746C A23403G G26262T GGG28881AAC C29546T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539714
 2020-08-14 2020-09-19
 India hCoV-19/India/TG-CCMB-AB215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T G991A C3037T G3871T A4372G C5700A C9693T G11083T C14408T C14724T C16626T C21411T A23403G C23679T G26262T C28311T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539715
 2020-08-14 2020-09-19
 India hCoV-19/India/TG-CCMB-AB248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C2226T C3037T G3340T G3871T A4372G C5700A C9693T C14408T C16626T G21055A A23403G G26262T T27713C G28077T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539721
 2020-08-14 2020-09-19
 India hCoV-19/India/TG-CCMB-AB415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A4372G C5700A C5822T C9693T T10639C C13721T C14178T C14408T G16181A C16626T AA21550CT A23403G G24959T A25934G C27425T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539740
 2020-08-14 2020-09-19
 India hCoV-19/India/TG-CCMB-AB227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2706T C2836T C3037T C9042T C14408T G18449T C18877T G19962T C21811T C22444T A23403G T25078C G25477T G25563T C26735T G27777T C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539817
 2020-08-14 2020-09-21
 China hCoV-19/Hong Kong/VM20108307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539822
 2020-08-14 2020-09-21
 China hCoV-19/Hong Kong/VB20175873/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C6388T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539823
 2020-08-14 2020-09-21
 China hCoV-19/Hong Kong/VB20175856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T C14408T C20312T C21597T A23403G C28308G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539969
 2020-08-14 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9989BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T A8086G A9433T TAT9858- G10265A C12919T C14408T A19650G A23403G G24193T T24499C C25782T G28188A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540311
 2020-08-14 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FA80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541711
 2020-08-14 2020-09-23
 India hCoV-19/India/MH-NIV-164425/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C4918T C5700A C6429T A12393G C14408T C20178T A23403G C26256T A28052G GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_547702
 2020-08-14 2020-09-24
 United States hCoV-19/USA/WI-GMF-15269/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C4686T G8314A A10323G G11083T C14408T T15276A C17747Y AA21550MW A23403G G25563T G28842T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547703
 2020-08-14 2020-09-24
 United States hCoV-19/USA/MN-GMF-15330/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C4686T G8314A A10323G G11083T C14408T T15276A A20019G A23403G G25563T G27915R G28842T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_547704
 2020-08-14 2020-09-24
 United States hCoV-19/USA/IA-GMF-15466/2020
 ATTAAAGGTTTA1- C241T C601T A1777G C3037T C8389T C10232T G12832T G14209T C14408T T21826C A23403G G25563T G25939A G26109K G27915A A28254Y A28349T A28877T G29402T G29742T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547970
 2020-08-14 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_547971
 2020-08-14 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_547981
 2020-08-14 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_547982
 2020-08-14 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_547983
 2020-08-14 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_547985
 2020-08-14 2020-09-25
 New Zealand hCoV-19/New Zealand/CAN-ESR-20CV0079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C12513T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548593
 2020-08-14 2020-09-26
 United States hCoV-19/USA/CA-CZB-4046/2020
 ATTAAAGGTT1- A2251G C3037T C5907Y G14055T C14408T A20268G C20759T A23403G G23405A T24076C C28253T C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548601
 2020-08-14 2020-09-26
 United States hCoV-19/USA/CA-CZB-4094/2020
 AT1- C241T G1820T G2946A C3037T C14408T C14599T A20268G A23403G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_548608
 2020-08-14 2020-09-26
 United States hCoV-19/USA/CA-CZB-4096/2020
 C241T G1820T G2946A C3037T C10626T C14408T C14599T A20268G A23403G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_548615
 2020-08-14 2020-09-26
 United States hCoV-19/USA/CA-CZB-4093/2020
 AT1- C241T G1820T G2946A C3037T C10626T A12858R C14408T C14599T A20268G A23403G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548641
 2020-08-14 2020-09-26
 United States hCoV-19/USA/CA-CZB-4098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCA1- C241T G1820T G2946A C3037T C14408T C14599T A20268G A23403G C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_548646
 2020-08-14 2020-09-26
 United States hCoV-19/USA/CA-CZB-4095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCA1- C241T G1820T G2946A C3037T C10626T C14408T C14599T A20268G A23403G C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_562626
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C8650Y C14408T G16647T A17337G C18555T C22858T G22992A G23401A A23403G -25700CCC GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562838
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC10244/2020
 ATTAAAGGTTTATACCTTCCCAG1- T25Y C241T A1163T C3037T T7540C C9996T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562839
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC10245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C539T A1163T C3037T C5144T T7540C C14408T G16647T C18555T C21575T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562842
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC10250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T9964Y C9996T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_562843
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC10251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C9996T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562844
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC10253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C9996T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_562891
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC10363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C8389T A10155G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563624
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC13140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563625
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC13146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A A23095R G23401A A23403G C23655T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_563628
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC13178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T4303C T7540C C9532T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563634
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC13186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G18854T G22992A G23401A A23403G C23525Y C23655T GGG28881AAC C29769Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563778
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC13602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C575M A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_563804
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC13670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C3634T T7540C C9996T C14408T G16647T C18555T C20234Y G22992A G23401A A23403G C26895Y GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564777
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC7968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC G29692T G29777T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_564794
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC7991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C24382Y C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564801
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C683T A1163T C3037T T7540C C8389T A10155G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564802
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564806
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G11083K C14408T G15594T G16647T C18555T G22992A G23401A A23403G C28290Y GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564838
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C9996T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564855
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C9808T C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC C29200T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564862
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2488T C3037T T7540C C9050T C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564878
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C9803T C10626T C14408T G16647T G17370A C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564879
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T C29708T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564891
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_564945
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8331/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G C27513T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564947
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C T11541G C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564951
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C G13762A C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564965
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T A15945R G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564966
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564967
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C9996T C14408T G16647T C18555T G22992A G23401A A23403G C26947T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_564970
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T11212C C14408T G16647T C18555T G22992A G23401A A23403G C28744T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565081
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC8536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565578
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC9505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C2227T C3037T C3874M T7540C A13488G C14408T G16647T C18555T C18568T G21850A G22992A T23042C G23401A A23403G C24897T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565580
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC9508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C2227T C3037T T7540C G12590R A13488G C14408T G16647T T16993Y C18555T C18568T G21850A G22992A G23401A A23403G C24897T G26262S GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565640
 2020-08-14 2020-09-30
 Australia hCoV-19/Australia/VIC9654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_569071
 2020-08-14 2020-10-02
 France hCoV-19/France/IHU-1167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G C25460T G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569072
 2020-08-14 2020-10-02
 France hCoV-19/France/IHU-1169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T C22458T A23403G C23525T G25563T C26533T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569076
 2020-08-14 2020-10-02
 France hCoV-19/France/IHU-1175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T G19735T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569196
 2020-08-14 2020-10-02
 France hCoV-19/France/IHU-1560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

MT947074
 2020-08-14 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947075
 2020-08-14 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947076
 2020-08-14 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947077
 2020-08-14 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947078
 2020-08-14 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947079
 2020-08-14 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947080
 2020-08-14 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947081
 2020-08-14 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947082
 2020-08-14 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947083
 2020-08-14 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947084
 2020-08-14 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_516551
 2020-08-15 2020-08-21
 Australia hCoV-19/Australia/SAP488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T1947C C3037T G6713A A8651C C14408T G18412T C18877T C22444T A23403G G25563T C26735T C28854T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_517550
 2020-08-15 2020-08-24
 United Kingdom hCoV-19/England/SHEF-C527A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C15546A C21637T A23403G C28000T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517560
 2020-08-15 2020-08-24
 United Kingdom hCoV-19/England/SHEF-C9D57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517575
 2020-08-15 2020-08-24
 United Kingdom hCoV-19/England/SHEF-D116F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C15546A C21637T A23403G C28000T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517609
 2020-08-15 2020-08-24
 United Kingdom hCoV-19/Wales/PHWC-169C5B/2020
 ATTAAAGGTTTA1- C241T A1431C C3037T T3049C C14408T G21624T A23403G G24794T C26013G G27877T A28523G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_523959
 2020-08-15 2020-08-27
 Brazil hCoV-19/Brazil/SP-163/2020
 TTAAAGGTTTATACCTTCCCAGGT2- C241T C3037T C14408T A23403G T27299C G28395T GGG28881AAC T29148C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_526613 MT956737
 2020-08-15 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1127/2020
 ATTAAAGGT1- C241T C2416T C3037T C9521T C9969T C10369T C12525T C14408T C16616T A23403G G25563T C26885T C27603T C28887T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526614 MT956738
 2020-08-15 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1128/2020
 ATTAAAGG1- C21T C241T C1059T C2453T C3037T C3369T C5583T G8017T C14408T C16260T A23403G G25563T T27534C G28134A C28290T C28821A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_526616 MT956740
 2020-08-15 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C7732T C14408T C16616T A23403G G25563T C26885T C27603T C28887T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_529236
 2020-08-15 2020-09-10
 United Kingdom hCoV-19/England/CAMB-1B5BCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1620G T2236C C3037T G3918A C4002T T5590C TCTTACTAT6577- A6604G G10097A G10700A A11770G C13536T C14408T G15814A G21600T T21752G C22550T A23403G C23731T G25033A C26299A C26333T C27059T T27618C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529624
 2020-08-15 2020-09-10
 United Kingdom hCoV-19/England/BIRM-6285F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G27008T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529645
 2020-08-15 2020-09-10
 United Kingdom hCoV-19/England/BIRM-63706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C G1820A C3037T T3508A C6286T T7738A C13671T C14408T G21255C C22227T A23403G G24757T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529723
 2020-08-15 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002722/2020
 ATTAAAGGTTTA1- C241T C3037T C4002T C6401T G10097A C13536T C14408T C18747T C23248T A23403G C23731T C26801T GGG28881AAC G29425T A29567G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_529730
 2020-08-15 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002732/2020
 ATTA1- C241T C2094T C3037T C10341T C14408T G16853T A23403G C23991T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529734
 2020-08-15 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002736/2020
 AT1- C241T C3037T C3177T A7064G C14408T C22675T A23403G T27384C G28166A C28639T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529739
 2020-08-15 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002741/2020
 ATTA1- C241T C3037T A7064G C13059T C14408T C22675T A23403G C26681T T27384C G28083T GGG28881AAC C29555T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529740
 2020-08-15 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002744/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1722T C3037T A6081G C11173T T12503C C14408T T15813C A23403G G25770T G25784T C28344T GGG28881AAC G29711T C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_529743
 2020-08-15 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C3037T C4002T C8290T G10097A C13536T C14408T C18747T A18911C C23248T A23403G C23731T C26801T GGG28881AAC G29425T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_529744
 2020-08-15 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G10097A C13536T C14408T C18747T A18911C C23248T A23403G C23731T C26801T GGG28881AAC G29425T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_529749
 2020-08-15 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002753/2020
 C241T C3037T C3551T C10116T G11447A C14408T C22675T T22965C A23209G A23403G G26227T G28077T GGG28881AAC GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_529755
 2020-08-15 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002759/2020
 ATTAAAGGTTTATAC1- C241T C1063T C2094T T2432C C3037T C5822T A11117G C14408T G14785T G16853T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_529757
 2020-08-15 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002761/2020
 C241T C3037T C4534T C5184T G9434T T9508C C11752T C13554T C14408T C19983T C22675T A23403G G23868T G24794T G27261A GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_529758
 2020-08-15 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002762/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C4002T C5784T G10097A C13536T C14408T C18747T A23403G C23731T C27371T T27384C C28725T GGG28881AAC G29425T C29625T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_530414
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96EFBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T C8299T C11020T C11095T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T T28406A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530466
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F3EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A C6606T C11124T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25889T G27074T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530505
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F1C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G T25139C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530514
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F15E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G C22987Y A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530547
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E6F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530589
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F16D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G C24174Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530594
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F4DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T G25684T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530595
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F3FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1288T C3037T C4391A C11124T C14408T G14792T C15848T G15982T G19254T T19893C A21137G A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530821
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C0FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C11758T C14408T C15738T T19839C C21646T A23003G A23403G A24205T G28083T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530822
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A21163G A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530826
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96C0BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530828
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C41C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530836
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96C212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530858
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C2E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530871
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96C203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530876
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A0ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T G20893T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530881
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A21163G A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530883
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912Y C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530888
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C5DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530905
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C5A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530906
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96C29A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C C14408T A17256T C21327T G21724T G21770A A23403G GGG28881AAC G29027T C29743T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530912
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A21163G A23403G A25235T T25257Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530914
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530920
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C9943T C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530934
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C0EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530937
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C0AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C9303T C11758T C14408T C15738T T19839C C21646T A23003G A23403G A24205T G28083T AG28877TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531240
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AE98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531258
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AEE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T C22227T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531260
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BE97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829Y A1163T C3037T T3256C C5622T G14202T C14408T G15260K G19542T C19718T C22388T A23403G C26060T G27217K A27455G GGG28881AAC G29227T C29466T A29771G A29815R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531263
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AE4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A681G C3037T C9438T C14408T G19525T A20268G G21641T A23403G G28109T C28473T C28854T C29200T C29451T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531277
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AEC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A681G C3037T C9438T C14408T G19525T A20268G G21641T A23403G G28109T C28854T C29200T C29451T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531285
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AEF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- C3037T G7037T G11447A C12488T C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531298
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AE3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A681G C3037T C9438T C14408T G19525T A20268G G21641T A23403G G28109T C28473T C28854T C29200T C29451T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531308
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AFB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T G9463A C14408T G15438T G20356T A23403G C25207T T26160C G26918T C27513T C28453T GGG28881AAC A29407G T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531313
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BEB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531322
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AF4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC TA29789- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531324
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96AF86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T C15216Y G21255C C22227T G22484T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531325
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96ADB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C6628T C8318A C10615T C14408T G16075T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531326
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AD8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T A5616G C8318A C10615T G11083T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531332
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AFC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C367T C3037T C3096T A4687G C4927T C14408T G19549T A23403G C28093T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531347
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AD04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T G13897T C14408T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531363
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19872C A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531366
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AEB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T C16887T G17278T C18032T G18105T G18662C C20629Y A23403G C23625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531370
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B0A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T T5507A G11083T C14408T A20268G C21364T C21614T A23403G C24700A G25052A G25660T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531372
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AC8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T C21660T A23403G C24700A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531376
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531394
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T T5507A G11083T C14408T A20268G C21364T C21614T A23403G C24700A G25052A G25660T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531409
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96AF95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21255C C22227T G22484T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531447
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96BEA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531458
 2020-08-15 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B1CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9339G C14408T C17766T G19086T C21637T C22088T A23403G G24867T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534372
 2020-08-15 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96A126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534374
 2020-08-15 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96A3A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T G15444T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534376
 2020-08-15 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96A27E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534382
 2020-08-15 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96A092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534386
 2020-08-15 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96A135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C5178T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534390
 2020-08-15 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-969FF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C11644T C14408T A18223C G18225A T18228A C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534399
 2020-08-15 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96A28D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536601 MW035399
 2020-08-15 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1380T A2375C G2782T C3037T A11983G C14408T C16887T A23403G T23878C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536620 MW035418
 2020-08-15 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T G6422A A7837C C9996T A10317G C11886T C14408T C16375T G17122T G19677T A23403G A28837G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536872
 2020-08-15 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A2E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536909
 2020-08-15 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536932
 2020-08-15 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A1F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T C6286T G11132T C14408T A14578G G21255C G22094C C22227T A23403G G23522C G25049T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536958
 2020-08-15 2020-09-16
 United Kingdom hCoV-19/England/QEUH-96A205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539639
 2020-08-15 2020-09-19
 India hCoV-19/India/TG-CCMB-AB300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3774A G4354A C6573T G12067T C14408T A23403G C25528T C25693T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539656
 2020-08-15 2020-09-19
 India hCoV-19/India/TG-CCMB-AB314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6573T G7641A C8802T A13488G C14408T C18387T A23403G C24621T C25528T C25904T C26801T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539789
 2020-08-15 2020-09-20
 Ecuador hCoV-19/Ecuador/USFQ-219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T A23403G C23731T GGG28881AAC

EPI_ISL_539790
 2020-08-15 2020-09-20
 Ecuador hCoV-19/Ecuador/USFQ-220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_539791
 2020-08-15 2020-09-20
 Ecuador hCoV-19/Ecuador/USFQ-222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T T3793C C14408T A23403G A26530G

EPI_ISL_539792
 2020-08-15 2020-09-20
 Ecuador hCoV-19/Ecuador/USFQ-224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T T3793C C14408T A23403G A26530G

EPI_ISL_539793
 2020-08-15 2020-09-20
 Ecuador hCoV-19/Ecuador/USFQ-226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G922A C3037T C14408T T18436C C21242T A23403G GGG28881AAC

EPI_ISL_540244
 2020-08-15 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F7F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7360T G10265A G11083T C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540253
 2020-08-15 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FCC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8650T C14408T G20477T C21637T A23403G A28169G GGG28881AAC G29527K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540272
 2020-08-15 2020-09-21
 United Kingdom hCoV-19/England/QEUH-97011E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540308
 2020-08-15 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F74D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547706
 2020-08-15 2020-09-24
 United States hCoV-19/USA/WI-GMF-15609/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T T1592C C2416T C3037T C6113T C14408T T16530A G21372T A23403G G25563T C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547984
 2020-08-15 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_549034
 2020-08-15 2020-09-28
 Norway hCoV-19/Norway/3205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C2113T C3037T A3120C A3472G A6798T C7765T G11521T G11527T C14408T G17523T C17690T C18877T A23403G G25563T C27509T A28959G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549035
 2020-08-15 2020-09-28
 Norway hCoV-19/Norway/3207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT C10519T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562617
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC13173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C8650T G11083T C14408T G16647T A17337G C18555T C22858T G22992A G23401A A23403G -25700CCC GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562661
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T GTCATGTTA510- A1163T C1722T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G G23417A C27059T C28087T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562894
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC10380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C9996T C14408T G16647T C18555T G22992A G23401A A23403G C26947T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563140
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC10889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23311R G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_563344
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC11357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C4331Y T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563627
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC13156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C8299T C14408T G16647T A17337G C18555T C22227T G22992A G23401A A23403G C23655T C26912Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563638
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC13196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563643
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC13227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C7945Y C14408T G16647T A17337G C18555T C19441Y C22227T G22817K G22992A G23401A A23403G C23655T G25816K GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564795
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC7993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19017T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564834
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564837
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G C25463Y GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564860
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C7834T C14408T G15789T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29449T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564861
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8122/2020
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22523V G22992A G23401A A23403G G27758A TT27760AC GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564863
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8124/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564864
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G27758A TT27760AC GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564919
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T T2343K C3037T T7540C C14408T G15594T G16647T C18555T C20936T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_564929
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2919Y C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C25792M GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564964
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T A20486C G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565085
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A3372G T7540C C14408T G16647T C18555T T19500C G22992A G23401A A23403G A25137C T26773C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565088
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3860T T7540C G11083T C14408T C15352T G16647T C18555T C21812T G22992A G23401A A23403G G24992C G25126K A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565098
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A3372G T7540C C14408T G16647T C18555T T19500C G22992A G23401A A23403G A25137C T26773C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565099
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8580/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A3372G T7540C C14408T G16647T C18555T T19500C G22992A G23401A A23403G A25137C T26773C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565100
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565101
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565102
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C9996T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565103
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3564K G7038K T7540C C14408T G16647T C18555T G22992A G23401A A23403G G24933K GGG28881AAC C29347T G29692T G29777T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565129
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC8649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565478
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC9274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T C14980T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565544
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC9428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565557
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC9452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C T11541G C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565590
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC9533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C3738T C4832T T7540C C9491T T14136C C14408T G16647T C18555T C19170T G21800T G22992A G23401A A23403G C26571T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565646
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC9673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T A1163T C3037T T7540C T11541G C14408T G16647T A17337G C18555T C21933T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565647
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC9675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3114T T7540C G12167R C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565648
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC9676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T C19152T G20489T G22992A G23401A A23403G GAT27382CTC GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565650
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC9680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C683T A1163T C3037T T7540C C8389T A10155G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565757
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC9875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1469T C3037T T7540C C8389T C14408T G16647T C18555T G22992A G23401A A23403G C26822Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565758
 2020-08-15 2020-09-30
 Australia hCoV-19/Australia/VIC9877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G20383K G22992A G23401A A23403G C23707T G24794R T27785C GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_566029
 2020-08-15 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A696C C3037T G3871T T3931C C4226T C5055T C5672T A7837C C10615T G11527T G12769T C14408T T14700C G16647C T22721C A23403G C25854T C28977T TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_568576
 2020-08-15 2020-10-02
 Japan hCoV-19/Japan/NGY-NNH-021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T T4346C C9286T C10376T C14408T C14708T T22020C A23403G C28725T GGG28881AAC G29692T TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_569077
 2020-08-15 2020-10-02
 France hCoV-19/France/IHU-1176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28077T G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569078
 2020-08-15 2020-10-02
 France hCoV-19/France/IHU-1179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T C7869T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_523802
 2020-08-16 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A C21844T T23084C A23403G C25318T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523804
 2020-08-16 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A C25624T T27342C G28655T T29317C G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523808
 2020-08-16 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C1758T C3037T T4640C C5512T C6195T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G23593T G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_529625
 2020-08-16 2020-09-10
 United Kingdom hCoV-19/England/BIRM-6287D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529627
 2020-08-16 2020-09-10
 United Kingdom hCoV-19/England/BIRM-628E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2576T C3037T C5175T C6401T C14408T G16700T C21234T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529646
 2020-08-16 2020-09-10
 United Kingdom hCoV-19/England/BIRM-63760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7299T C10448T G11083T C14408T A20268G C21614T A23403G C28603T G28703T C28854T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529647
 2020-08-16 2020-09-10
 United Kingdom hCoV-19/England/BIRM-6377F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7299T C10448T G11083T C14408T A20268G C21614T A23403G C28603T G28703T C28854T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529648
 2020-08-16 2020-09-10
 United Kingdom hCoV-19/England/BIRM-6378E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7299T C10448T G11083T C14408T A20268G C21614T A23403G C28603T G28703T C28854T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529698
 2020-08-16 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169C88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1431C C3037T T3049C C14408T G21624T A23403G G24794T C26013G G27877T A28523G GGG28881AAC A29903-

EPI_ISL_529721
 2020-08-16 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2485T C3037T C4002T A7699G C7765T G10097A C13536T C14408T C18747T A23403G G23426A C23731T GGG28881AAC G29425T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529729
 2020-08-16 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T A7064G A10323G C14408T C22675T A23403G C25521T C26586T T27384C GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_529731
 2020-08-16 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002733/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3808C G5425T C8123T G13435T C14408T A20268G A23403G T26975C C28674T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_529732
 2020-08-16 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002734/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C3604T C14408T C21727T G21848C C22120T A23403G C23625T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529733
 2020-08-16 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002735/2020
 ATTAAAG1- C241T C2094T C3037T C10341T C14408T G16853T A23403G C23991T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_529750
 2020-08-16 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6568T G11447A C14408T C14676T C15989T C22675T C23086T A23403G G23593T A25505T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_529756
 2020-08-16 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002760/2020
 ATT1- C241T C3037T G11447A C14408T C22675T A23403G G28077T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_529759
 2020-08-16 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G11447A C14408T C22675T A23403G A25505T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_530152 MT997223
 2020-08-16 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2795/2020
 ATTAAAGGTTTATAC1- C241T C1059T T1927C C3037T C10319T C10626T C10755T C14408T A18424G C21304T C21727T A22255T A23403G G25563T G25907T G27014T C27964T C28472T C28869T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_530421
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F14F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C1288T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530425
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G8513R T14100C C14408T A20268G C21614T A23403G G27676C CA28846TG C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530457
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F08E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11563T C14408T A23403G G25617T G28376A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530491
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14117T C14408T G15598A C17104T G18028T A20268G TACATG21765- G21800T C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530521
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F3A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C313T C1489T C3037T C14408T CG21304AA A23403G C25046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530537
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F23D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531229
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5822T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531233
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96B87B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531251
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96B85D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T G21718A A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531257
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B7C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T G16846K C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531261
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96B84E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531265
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96B91E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531287
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96B8F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1710T C1912T C3037T G4105T G4180T C8293T T10453C C11195T C14408T A21163G A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531306
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96B86C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C4965T A8072G C14408T A16011G A21213G T22334A A23403G A25759G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531331
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96B90F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531360
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96B83F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T T17136C A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531387
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96B8D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531426
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96B93C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531441
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96B978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C9943T C13511T C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531454
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96B94B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531461
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96B92D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A A4414C G8120C C10448T C14408T C15738T T19839C C21646T A23403G A24205T GTT26155- G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531470
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96A7AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531480
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96A751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531485
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96A6DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531495
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96A6CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531504
 2020-08-16 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96A548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534647
 2020-08-16 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B7AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T C26022T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534675
 2020-08-16 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B76F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534681
 2020-08-16 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B9A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535640 LR881929
 2020-08-16 2020-09-15
 Switzerland 250134_899_E03
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2905R C3015M C3037T C3096Y T3144K G6337T C9430T T11737C C12823T C14408T G19542T A23403G C26894Y C27092T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535641 LR881931
 2020-08-16 2020-09-15
 Switzerland 250135_900_F03
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T473Y A2917M T2978Y A3023M C3037T G3585K AC3601RT C3738H G3759R C6941T T7305K A8667R A8681R T8724Y A8799R G8852K C14408T C15324T A16210W C21855T A23403G A25505G G25906S G25996T C28651T C28869T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_536625 MW035423
 2020-08-16 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3768A T6634C T9721C C12025T G12514T C14408T C19164T T19839C C19955T G21220T A23403G C23707T C25904T G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536627 MW035425
 2020-08-16 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C9532T C14408T C16323T G19677T A23403G G25947T C28977T G29777T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536629 MW035427
 2020-08-16 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14178T C14408T G19677T A23403G C25276T C28977T C29077T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539596
 2020-08-16 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4927T C9693T C14408T A17429G C18744T T19839C A23403G C23422T C25916T G27014T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539618
 2020-08-16 2020-09-19
 India hCoV-19/India/TG-CCMB-AB583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2325T C3037T G4354A C6573T A12547T C14408T AA21550CT A23403G C25528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539675
 2020-08-16 2020-09-19
 India hCoV-19/India/TG-CCMB-AB559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2062T C3037T G4354A C6573T C10029T T10513G G11083T T11314C C14408T G16153A C18877T G19872T A23403G C25528T C27942T G28048T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_540276
 2020-08-16 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FAF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G G25269K C26801G G27613K C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540339
 2020-08-16 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FC11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540420
 2020-08-16 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96B055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C140T C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C19868A C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547708
 2020-08-16 2020-09-24
 United States hCoV-19/USA/WI-GMF-15652/2020
 ATTAAAGGTTTA1- C241T C3037T C3768A A6360R T9721C C12025T G12514T C14408T C19164T T19839C C19955T G21220T A21625R G21753K A23403G C23707T G25906T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547709
 2020-08-16 2020-09-24
 United States hCoV-19/USA/WI-GMF-15673/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T C4686T G8314A A10323G G11083T C14408T T15276A A23403G A25381M G25563T G28842T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547978
 2020-08-16 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548004
 2020-08-16 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548005
 2020-08-16 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548006
 2020-08-16 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548590
 2020-08-16 2020-09-26
 United States hCoV-19/USA/CA-CZB-4100/2020
 ATT1- G102R C241T C3037T C9724T T10546Y C11020T C11620T C14408T T15385C C16386T T21570G C21575T C22388T A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_553043
 2020-08-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-9710D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C25350A C26801G C28706T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553051
 2020-08-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-97106B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C23934T C24372T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553075
 2020-08-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-971098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28739T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553093
 2020-08-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-9710E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543Y G5629K T7767Y C8047Y G9526K C11497Y G12988K G13993K C14408T G15598R G15766K A16889R G17019K C17104Y G18028K C18877Y A20268R C22879M G22992R A23403G T24910Y G25494K G25563K C25710Y C26735Y T26876Y T26972Y C27800M G28975S G29399R G29427R G29734S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553131
 2020-08-16 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-971010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553169
 2020-08-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-97105C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T G28001T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553195
 2020-08-16 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-971001/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553225
 2020-08-16 2020-09-28
 United Kingdom hCoV-19/England/MILK-970BE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174C C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T T18096C A20268G C21595T TACATG21765- C22879A A23403G T24910C T26972C C27800A G28378T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562623
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC7919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T A3481G T7540C C14408T C16222T G16647T A17337G C18555T C22858T G22992A G23401A A23403G C24034T -25700CCC GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_562631
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16065R C16222T G16647T A17337G C18555T C20104Y C22858T G22992A G23401A A23403G C24034T -25700CCC GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_562678
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C4206T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G TTCTTGCTG25547- GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563137
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC10883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G428S A1163T G1784S C3037T G5425S T7540C C9996T G10704K C14408T G16647T C18555T G22988R G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563640
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC13205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC C29614T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564738
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC7908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C26681Y GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564755
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC7933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5365T T7540C C14408T G16647T C18555T G21220T G22992A G23311T G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564767
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC7956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13019Y C14408T G16647T C18555T G22992A G23401A A23403G G28580T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564827
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC8062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564828
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC8063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T C15324Y G16647T A17337R C18555T C22227Y G22992A G23401A A23403G C23655Y GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564842
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC8091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C829Y A1163T C3037T T7540C C14408T G16647T C18555T C18570T G22992A G23401A A23403G G24764T A26162G GGG28881AAC G29579A ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564843
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC8092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C6033T T7540C C14408T C14980T G16647T C18555T C18568T G22992A G23401A A23403G C23457A C24026T GGG28881AAC C29774T GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564844
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC8094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G C27911Y GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564845
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC8096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564846
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC8098/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21516T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564849
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC8102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T T1432C C3037T T7540C A7669G G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564850
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC8103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29364Y ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564852
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC8105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T C6543Y T7540C C9438T C14408T G16647T A17337G C18555T G22992A G23401A A23403G C27688T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565374
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T A21551G G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565375
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565454
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T10921Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565473
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C583T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565559
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27988Y GGG28881AAC C29347T G29692T G29777T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565560
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29347T G29692T G29777T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565561
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29347T G29692T G29777T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565562
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C A13182R C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29347T G29692T G29777T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565571
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26894Y GGG28881AAC C29347T G29692T G29777T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565575
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565598
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T G19021T C20544T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565599
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C17373T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565607
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C683T A1163T C3037T T7540C C8389T A10155G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565608
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C683T A1163T C3037T T7540C C8389T A10155G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565651
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21516T G22992A G23401A A23403G C24381T GGG28881AAC C29451T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565739
 2020-08-16 2020-09-30
 Australia hCoV-19/Australia/VIC9837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T G428S A1163T G1784K C3037T G3179K G5425K C6033T T7540C G10704K C14408T G16647T G18310S C18555T C18568T G21097K G22992A G23401A A23403G C23457A C24026T C24734Y GGG28881AAC C29774T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568401
 2020-08-16 2020-10-01
 United Kingdom hCoV-19/England/QEUH-97012D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C17690Y G19254T T19893C A21137G G22335T A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568405
 2020-08-16 2020-10-01
 United Kingdom hCoV-19/England/QEUH-97013C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G G22335T A23403G C25046Y C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568421
 2020-08-16 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96FC02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T C17999T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514458
 2020-08-17 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D16D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C11563T C14805T C18568T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_514467
 2020-08-17 2020-08-17
 United Kingdom hCoV-19/England/PORT-2D1789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1420T ATG1605- G23311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_523803
 2020-08-17 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T C14408T C19170T G19509A G21770T A23403G C26313T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523805
 2020-08-17 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T4640C C5512T C6195T C6285T C9246T C11109T C12415T C14408T C17750T G17790T T19159G A23403G G25563T G25565A T27342C G28655T G29402T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523806
 2020-08-17 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10610T G10870T G11335T C14262T C14408T C18486T A20268G T22162C A23403G G25489T C28854T G29494A GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523807
 2020-08-17 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_526458
 2020-08-17 2020-09-01
 United Kingdom hCoV-19/Scotland/CVR3969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC C29197T G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526618 MT956742
 2020-08-17 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1132/2020
 ATTA1- C241T T1066C C3037T G4511A C10376T T13339C C14391T C14408T C18252T A23403G C23929T G25855T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_526619 MT956743
 2020-08-17 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1133/2020
 ATT1- C241T C2416T C3037T C3293T C14408T C16616T C19586T C21207T A23403G G25563T C26885T C27603T G28727T C28887T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_526620 MT956744
 2020-08-17 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1134/2020
 ATTA1- C241T C2416T C3037T C3293T C14408T C16616T C19586T C21207T A23403G G25563T C25701T C26885T C27603T G28727T C28887T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526621 MT956745
 2020-08-17 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1135/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C10319T C14408T G16710T G20176T A23403G C23533T A25121T G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527359
 2020-08-17 2020-09-03
 Singapore hCoV-19/Singapore/850/2020
 ATTAAAGGTTTATACC1- C37M C241T C3037T A8882G C8917T G9389A T12013G G12274T C13487T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_527360
 2020-08-17 2020-09-03
 Singapore hCoV-19/Singapore/851/2020
 ATTA1- A3951G C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T A23914G C23929T C28311T G29616T AAAAAAAAAAAA29892-

EPI_ISL_527364
 2020-08-17 2020-09-03
 Singapore hCoV-19/Singapore/855/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C241T C3037T G4124A G8017T C8917T G9389A G10870T C14408T G15921A A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_527365
 2020-08-17 2020-09-03
 Singapore hCoV-19/Singapore/856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4124A G8017T C8917T G9389A G10870T C14408T G15921A A23403G A27156G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_527366
 2020-08-17 2020-09-03
 Singapore hCoV-19/Singapore/857/2020
 ATTAAAGGTTTATACCT1- C5467T C6310A C6312A C10228T G11083T C13730T C16260T C19524T C20964T C21772T C23185T C23929T G26113T C28311T AAAAAAAAAAAA29892-

EPI_ISL_527367
 2020-08-17 2020-09-03
 Singapore hCoV-19/Singapore/858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C203Y C6310A C6312A G11083T G11335K C13730T T16854C C19524T C20594T C23185T C23929T G25534T C28311T C29095T AAAAAAAAAAAA29892-

EPI_ISL_527368
 2020-08-17 2020-09-03
 Singapore hCoV-19/Singapore/859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACT1- C6310A C6312A C8240Y G8540A G11083T C13730T C14284M T16854C C19524T C20594T C23185T C23929T G25534T C26858Y C28311T C29095T C29415Y AAAAAAAAAAAA29892-

EPI_ISL_529656
 2020-08-17 2020-09-10
 United Kingdom hCoV-19/England/CAMB-1B5BBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T T7942C C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529657
 2020-08-17 2020-09-10
 United Kingdom hCoV-19/England/CAMB-1B5C14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T C18377T A23403G C25207T G25565T C25665T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529658
 2020-08-17 2020-09-10
 United Kingdom hCoV-19/England/CAMB-1B5C23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T C18377T A23403G C25207T G25565T C25665T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529659
 2020-08-17 2020-09-10
 United Kingdom hCoV-19/England/CAMB-1B5C32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T C18377T A23403G C25207T G25565T C25665T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529660
 2020-08-17 2020-09-10
 United Kingdom hCoV-19/England/CAMB-1B5C41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T C18377T A23403G C25207T G25565T C25665T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529748
 2020-08-17 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002752/2020
 G174T C241T C3037T C4069T C9857T T11629C C14408T C21772T A23403G A23920G A26530G G27561T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530167 MT997689
 2020-08-17 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1571/2020
 ATTAAAGGTTTATACCT1- C241T C3037T C10376T C11916T C14408T C18486T A20268G C21575T T22162C A23403G G25555T C28854T A29369C AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_530395
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530396
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F17C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530400
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E6D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C8964T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530402
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C936T C1960T A2440G C2570T C3037T C5301T C8683T T10330C G11083T C13247T C14408T C14937T T18144C A23403G C26681T GGG28881AAC T29678Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530404
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F1D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1547G C3037T C6286T C14408T G21255C G21724T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530406
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F5DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G942A C3037T G11230T C14134T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530407
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F84A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G20060T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530409
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F4CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10138T C14408T G21255C C21614T C22227T A23403G A24103G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530416
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DF1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530419
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F4BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T C3773T G4960T C4965T G5206K C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A A14280R C14408T G21800T C21952T A23403G G25563T G27632T C27804T C28830A G28903T G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530422
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F1B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G6553A C7926T C9745T C13329T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530431
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C T926C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C G28436T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530433
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T C27657T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530441
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F5E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G C27828T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530442
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT C21552T A23403G C23730T G25563T A26319G C28854T G29044A C29274T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530450
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DFB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5826Y G10265A G11083T C14408T C15720T A15972G C19718T A23403G G26700T G26754T T28510C T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530454
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A G29300T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530465
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G20060T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530473
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E0F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C20320T G21255C C21614T C22227T A23403G C26801G C27944T C28253Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530476
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F31C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530478
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E5BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T T7942C C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530484
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F5AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530490
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19254T C21575T A23403G C24023T C28831T GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530493
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F19A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A G11083T C14408T A20268G C21614T A23403G C24700A G25052A G25660T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530494
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F24C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C12400T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530499
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A C6926Y C11124T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530504
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1543A C3037T T4369C C14408T C21910T T21976C T22020C A23403G C27911T GGG28881AAC G29781K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530516
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F2B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T444G C1884T G2183A C3037T A9433T T9668C G10265A C10755Y C14408T A19650G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530519
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G22346T A23403G C26801G A26993G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530530
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F2C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C4002T C10039T G10097A C12534T C13536T C14408T C17766T C21597T G21724A A23403G G23593T C23731T A25360R C25493T A26864T C28253Y GGG28881AAC G28908T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530532
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F8B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T C19718T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530538
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T G19735T T20661C G21255C C22227T A23403G C26801G C28932T C29304Y C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530540
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C8139T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530543
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3369T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530545
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F1A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G6553A C7926T C9745T C13329T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530555
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C12400T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530564
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F6D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C20428Y G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530565
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E0E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C20320T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530568
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T C6286T G11132T G12028T C14408T A14578G G21255C C22227T C22450Y A23403G G23522C G25049T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530571
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G T27479Y C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530572
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C12400T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530575
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T A3210M C6706T G8371T G11083T C14408T C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530578
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5000T C9430T G10540T T11737C C12823T T14289A C14408T A16920C A23403G C27092T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530581
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2841T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530585
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E7D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530586
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F33A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530587
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C8964T C14408T G21255C C22227T A23403G A24325R C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530590
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DF47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T G9463A C14408T G15438T A23403G C25207T C25433T T26160C G26918T C28453T GGG28881AAC A29407G T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530591
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C G625T C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530602
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E6E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G376T T469C C3037T T7767C T7984C C8047T T11459G C14408T C16658T C17104T G18214A C18796T A20268G C22879A A23403G G27598T G28851T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530608
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C13887T C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530610
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96E5F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C2933A C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530612
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F67D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T T20299C C20759T G22225T A22910G C23086T A23403G G25784C GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530616
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F1F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T C7051T C7303T C8964T G11083T C12400T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531230
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96ABFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C12855T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531235
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96AA2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531239
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96AAFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T C16428T T19839C C21635T C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531242
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T C6445T C10868T A11971C C14408T G15652T A23403G G23438T C23655T C27131T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531245
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B4A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531249
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96B69F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531256
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96AB55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531264
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96AB46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531266
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96B389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C15720T A15972G C19718T A23403G C25317Y G26700T G26754T C27752T T28510C T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531281
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531286
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96AA94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6573T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531292
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T C20178T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531303
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96AA1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C12885T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531304
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96AA49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531307
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96AC25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531316
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AA3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531323
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96ABA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531340
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96AB28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531343
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96AC16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531357
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96ABDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- G21800T C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531365
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96B5A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29724S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531368
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B5FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531374
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96B4E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C3093T C4655Y C6286T G11083T C11102T T12226C C14408T C18555T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531378
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96A9F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531382
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96A95B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531388
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96AA76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T C17999T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531393
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96A9D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T C14925Y G15766T A16889G G17019T C18877T G22346T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531398
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96A94C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531406
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96A92E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531420
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96B27D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531422
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96B680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531425
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96ABBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T T17136C A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531428
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96AAB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G G27930A C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531437
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531452
 2020-08-17 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96A93D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534468
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E8B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G T25942Y GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534648
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534651
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534656
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B3C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G G9802T C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534657
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534659
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534661
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B5DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C15720T A15972G G16912T C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534663
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B51A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534665
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96A96A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11752Y C14408T G21255C C21614T C22227T A23403G G25621T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534667
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C9988T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C26889T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534669
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B3B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534670
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96BEC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534671
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B2D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534672
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96AAD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534673
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96BF49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534674
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96AAC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534679
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534680
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96A9E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T G22899K A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534684
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96ACCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C C14408T A17256T C21327T G21724T G21770A A23403G GGG28881AAC G29027T C29743T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535208
 2020-08-17 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T3049C C14408T C21575T G21624T A23403G C26013G G27877T A28523G GGG28881AAC C29296T

EPI_ISL_535585 LR881877
 2020-08-17 2020-09-15
 Switzerland 250030_849_E12
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G219R C241T C3037T G6337T G6961K G8349K T8506W C9430T A9859W G9882R C9924Y A9935R T10076W T11737C C12823T C14408T G19542T C20307Y C20368M A20418R T21605Y A21634M A23403G G25352K C26894Y C27092T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535588 LR881887
 2020-08-17 2020-09-15
 Switzerland 250062_865_A09
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C3037T G3065R C3092Y G3716S T3766Y A6938M T7035W C9360T T10330C G11083T G14028T C14408T A16210W T16257Y G16396K C22624T A23403G C23996T T27384C G28328A GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535589 LR881873
 2020-08-17 2020-09-15
 Switzerland 250063_865_G10
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G411R G491R T559W A642M A3027M C3037T T3576K T3592Y G3719K G5230S C8713T T10076W G10540K A11991G C14408T G14584R C14805T T15114C C15848Y A16210W G20940T C22993G A23403G G23580C G26951C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535643 LR881922
 2020-08-17 2020-09-15
 Switzerland 250138_902_D02
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2905W C2983M C3037T A3058M A3075M A3079M T5056Y G5233R T5255W C6926M C10582T G11083T C14408T C15141Y A20268G A23403G C25731T G28703C C28833T A29865H TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535644 LR881927
 2020-08-17 2020-09-15
 Switzerland 250139_903_B06
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C1912Y G2914R C3037T A3061M C6402T TT6933WY A11991G C14408T G14584R C14805T T15114C C15848Y C17550T G20940T C22993G A23403G G23580C G25654K G26951C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535645 LR881921
 2020-08-17 2020-09-15
 Switzerland 250141_903_F03
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T T7035W C13671Y C14408T C14805T G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T C28932T G29229R G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535646 LR881926
 2020-08-17 2020-09-15
 Switzerland 250143_904_B05
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G558K C1758T A2907M T2931Y C3037T A3123M T3144K G4510A C6924M C8888B C14408T G15438T A23403G G25785T GGG28881AAC G29260T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_536593 MW035391
 2020-08-17 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C21304T A23403G G25563T G25907T C27689T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536597 MW035395
 2020-08-17 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A A9085G C10319T C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536599 MW035397
 2020-08-17 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C19979A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536605 MW035403
 2020-08-17 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C19979A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536606 MW035404
 2020-08-17 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A A9085G C10319T C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536608 MW035406
 2020-08-17 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C27213T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536611 MW035409
 2020-08-17 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C19979A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536613 MW035411
 2020-08-17 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3994T G8083A A9085G C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536614 MW035412
 2020-08-17 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C19979A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536617 MW035415
 2020-08-17 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C19979A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536622 MW035420
 2020-08-17 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C19979A C21304T A23403G G25563T G25907T A27488G C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539597
 2020-08-17 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T T20273C C20759T C21727T A23403G G25720K GGG28881AAC CTCCTGCTAGAATGG28890- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539598
 2020-08-17 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T T20273C C20759T C21727T A23403G T25502Y GGG28881AAC CTCCTGCTAGAATGG28890- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539599
 2020-08-17 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G G14400A C14408T T21570G C21575T A23403G T25473C C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539600
 2020-08-17 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C18568T C18788T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539601
 2020-08-17 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T4941G C10138T G10882T G14028T C14408T C15763T C22624T A23403G T27384C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539602
 2020-08-17 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5183T G11719A C14408T C22388T A23403G G24368T G25563T G28899T G28916A G29593T C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539603
 2020-08-17 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A642G T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T C20428T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539605
 2020-08-17 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539606
 2020-08-17 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T C4890T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539607
 2020-08-17 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A642G T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T C20428T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539691
 2020-08-17 2020-09-19
 India hCoV-19/India/TG-CCMB-AB927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C9693T C10815T C14408T G14500T C16626T A23403G GGG28881AAC G29474T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539708
 2020-08-17 2020-09-19
 India hCoV-19/India/TG-CCMB-AB966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G61T C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T G18677T G19947T A23403G G23873T G25595T G27762C GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539842 MW020079
 2020-08-17 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1648/2020
 C241T C1059T C2710T C3037T C3885T G7936T A10323G C13957T C14408T T15276A T21462A C21575T A23403G A24010G C25046T G25563T G28842T G29810T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_539845 MW020082
 2020-08-17 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1651/2020
 AT1- C241T C1059T G1135T C3037T T7767C G11087A C13264T C13452T C14408T T19158C C21161T A23403G C23604T G25273T G25455T G25563T C28744T G29402T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_540234
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F6E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5761A C9430T G10540T C12823T C14408T G19861T C22480T A23403G C24418T C24865T C25572T C28311T GGG28881AAC C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540235
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F6F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T G22205C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540239
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FADB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T G2177K C3037T T8296Y G9802T G11083K G12067T C14408T G21624T A23403G G25699A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540242
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9700B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540245
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T595C C3037T A8244G G8408A G12191T C14408T C19488T C21622T A23403G T26171A C28500T GGG28881AAC G29254A C29409T G29474T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540246
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FA26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540248
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A C11124T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540249
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-96FC6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C5178T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540252
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FA17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540256
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-96F929/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540258
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F7D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540259
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926Y C9745Y C14408T G21255C C21614Y C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540262
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FB32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540263
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-970169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540265
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FACC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540268
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18486T A20268G T22162C A23403G G25249K C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540270
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F77A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T A20471G G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540274
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T T7942C C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540282
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F91A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20019G T22358C A22681T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540285
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F8E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5571C G6865T C14408T G15451A A23403G GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540288
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-97015A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7173T C8991T G10719A C11289T C14408T T15051C A20255G C21008T G21255C A23403G G28166A GGG28881AAC G29090T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540289
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F68C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19254T C21575T A23403G C24023T GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540290
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FABD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540291
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F8FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540294
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FF90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C15699Y G19542T C19718T C22388T A23403G C26060T C26889T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540300
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G G7070K A8659G A9848G C13199A C14408T C19488T C20480T A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540301
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-96FBD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C10789T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540303
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FA62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540304
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540306
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F82C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926Y C9745Y C14408T G21255C C21614Y C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540312
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FA08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540316
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-97008A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A17460G A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540320
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F90B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540322
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FAAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3256Y C5622Y C5758Y G14202K C14408T C19718Y C22687Y A23403G C25239Y G25617T GGG28881AAC C29466Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540323
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FC7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G17019T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540325
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FB6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C3787T C5175T C6401T C14408T C16084T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540326
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FA71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540337
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F81D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C8841T C14408T G21255C C22227T A23403G C26801G C27944T C28253Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540341
 2020-08-17 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F65F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C10789Y C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547710
 2020-08-17 2020-09-24
 United States hCoV-19/USA/MN-GMF-15765/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T G8083A A9085G C10319T C14408T C14805T A18424G C21304T AA21550MW A23403G G23593T G23868T G25563T G25907T C27964T C28472Y C28869T G29402T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_547711
 2020-08-17 2020-09-24
 United States hCoV-19/USA/IA-GMF-15767/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C4686T A10323G C14408T T15276A A23403G G25563T G28842T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547993
 2020-08-17 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_547994
 2020-08-17 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_547995
 2020-08-17 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548002
 2020-08-17 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548649
 2020-08-17 2020-09-26
 United States hCoV-19/USA/CA-CZB-4052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGC1- C241T G347A C3037T C5239T C8318A C12053T C14408T G18149T A20268G A23403G T24076C G28703T C28854T G29810T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_549049
 2020-08-17 2020-09-28
 Norway hCoV-19/Norway/3165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2407A C3037T C14408T G20709T T22588C A23403G G25563T C27849T G28812A C28849T G29688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549050
 2020-08-17 2020-09-28
 Norway hCoV-19/Norway/3166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2061T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G G23576A C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549167
 2020-08-17 2020-09-28
 Norway hCoV-19/Norway/3153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C1594T C3037T T3595C C4084T G6536A T6754C A11782G C14408T T19839C T22669C A23403G C25300T C28333T GGG28881AAC C28905T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551582
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-995720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552448
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-9750FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552548
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-974DF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T A21137G C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552650
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-9754C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553034
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-97071C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553048
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-970846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553062
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-970819/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A T27912G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553065
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-97048E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T A3081G C7051T C7303T C8964T G11083T C11379T T13096Y C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553066
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-97021B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C8809T A9848G C13199A C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553073
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-970390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553080
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-97080A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7663C G11230T C14408T A23403G T24088C C24138T G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553086
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-9702C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553095
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-9703CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C16260T G20134T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553104
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-9710C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C4540T C6633T C14408T G17278T G18394T C18877T T20664C C22444T A23403G G23426T C24919T G25563T C26111T C26735T C27524T G28655T C28854T C29095T C29137T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553119
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-970406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553121
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-970828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C8809T A9848G C13199A C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553124
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-970697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T C9679T G9805T C10894Y C14408T T15492C G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553126
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-9706E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T A9235R G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553127
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-97020C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553159
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-970794/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9130T C10448T T13997C C14408T C16111T A23403G C26936T C27213T T27319C G28487A T28516C C28868T GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553173
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-9708CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C C4345T C9438T C14408T C15738T A23403G C25000A C26195T C26464Y G27364C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553174
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-970336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T C22388T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553181
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-9707A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T A13768G C14408T C18086T C18877T C22444T A23403G G25563T C26735T C28854T C29555T G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553185
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-97070D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G T25992C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553203
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-9706A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T G4460T C6286T C9679T G9805T C14408T T15492C G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553204
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-97112C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- G21800T C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553207
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-97022A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T A6659G G12191T C13261T C14408T T16479C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553211
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-970758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24372T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553218
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-970318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553227
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-970266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T G25726T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553229
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-9708FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C5907T C13247T C14408T C14937T T18144C A23403G C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553236
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-970327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C23934T C24372T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553238
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-970837/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C8809T A9848G C13199A C14408T C19488T A23403G C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553243
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-970293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8809T G13385A C14408T C15324T C21575T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553264
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-9708DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1738T C2037T C3037T C10138T A10912G G11083T C14408T C17004T G22361K A23403G C25276T C27002T T27922C G28086K GGG28881AAC C29614T A29735G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553265
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-9701E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553266
 2020-08-17 2020-09-28
 United Kingdom hCoV-19/England/MILK-9707C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G12793A C14408T C16655T C16915T C18877T C19554T G20014T A23403G T24202C G25563T G25793T C26735T C28315T G28817T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562627
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G11083T C14408T C16222T G16647T A17337G C18555T C22858T G22992A G23401A A23403G C24034T -25700CCC GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_562896
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC10388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C2227T C3037T T7540C A13488G C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G C24897T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562901
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC10401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C21618Y C22480T G22992A G23401A A23403G C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563815
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC13717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T T20874C C22323T G22992A G23401A A23403G A27932G GGG28881AAC C29353Y TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563816
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC13720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G GGG28881AAC A29716G ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563837
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC13787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T G1464C C3037T T7540C C9430T C14408T G16647T C18555T G22992A G23401A A23403G G25429T A26162G T26552C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564730
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC7889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A5949G T7540C C13019Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564731
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC7890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A3372G T7540C C14408T G16647T C18555T T19500C G22992A G23401A A23403G A25137C T26773C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564732
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC7891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C335Y A1163T A1732R C2227T C3037T A4981R T7540C A13488G C14408T G16647T C16954T C18555T C18568T G21850A G22992A G23401A A23403G C24897T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564756
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC7934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564757
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC7935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12733T C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564758
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC7936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T A7040C T7540C A12199G C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C C28657T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564800
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564823
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564824
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564825
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C8739Y C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564826
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T C22227T G22992A G23401A A23403G C23655T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564830
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C8389T A10155G C14408T G16647T C18555T C22227T G22992A C23202M G23401A A23403G G28202A GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564831
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564832
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T847Y A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564833
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C8389T A10155G C14408T G16647T C18555T C22227T G22992A G23401A A23403G G28202A GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564836
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C T10717Y C14408T C15324Y G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564915
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2488T C3037T T7540C A12199G C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564916
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C313Y A1163T C3037T T7540C C14408T G14584A G16647T C18555T G22992A G23401A A23403G G26526T AG27753TA GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564933
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G C27494T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565048
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565082
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C8389T A10155G C14408T G16647T C18555T G22992A G23401A A23403G G28774K GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565083
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8545/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A3372G C7162Y T7540C C14408T G16647T C18555T T19500C G22992A G23401A A23403G A25137C T26773C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565084
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8547/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C8389T A10155G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565089
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8558/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T G3860T T7540C T11080K C14408T C15352T G16647T C18555T C21812T G22992A G23401A A23403G G24992C A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565091
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565092
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565097
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565106
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565108
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8605/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- T221C C241T A1163T C3037T G3259T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G G28817T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565125
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8638/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26322T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565128
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC8644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C8917T C14408T G16647T C18555T G22992A G23401A A23403G G27506A GGG28881AAC G29692T G29777T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565373
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC9048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T G614A A1163T C3037T T7540C C8025Y C14408T G16647T C18555T G22992A G23401A A23403G C23481T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_565415
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC9152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T G370S A1163T C3037T C3738T C3817M G4399B C4832T G5425S T7540C C14408T G16647T C17125Y C18555T C19170T C19255Y T21790Y G21800T G22992A G23401A A23403G C24726Y C24734Y C25703T C26198Y C26571T C28045Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565458
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC9238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C3738T C4832T T7540C C14408T G16647T C18555T C19170T G21800T G22992A G23401A A23403G C25703T C26571T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565460
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC9240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565462
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC9243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C11788T C14408T G15594T G16647T C18555T G22992A G23401A A23403G C25626Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565523
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC9366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T G25951T T27785C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565527
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC9374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C920T A1163T C3037T C7113T T7540C C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G C25276T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565533
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC9382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C27998Y GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565567
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC9478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565740
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC9838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565741
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC9839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C6033T T7540C C14408T C14980T G16647T C18555T C18568T G22992A G23401A A23403G C23457A C24026T GGG28881AAC C29774T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565759
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC9878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C1758T C3037T C3177T T7540C C14408T G16647T C18555T C20628T C22480T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565760
 2020-08-17 2020-09-30
 Australia hCoV-19/Australia/VIC9879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21952Y G22992A G23401A A23403G C27643Y C28312Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_566022
 2020-08-17 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8389T A12240R C14408T A20268G A23403G G26558A C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568424
 2020-08-17 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96F9FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_569079
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26521T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569080
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569081
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1912T C3037T G5210A C14408T C15324T C17470T C21191T A23148G A23403G T27125C C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569082
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T T8743C C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G16377T G16647A G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569084
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569085
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14115T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569086
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G14772T G15766T A16889G G17019T T17301C C18877T G22021A G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569088
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T C14408T A20268G C22088T G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569089
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T G5378A C14408T A20268G C22088T G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569090
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G1181T C1625T C3037T G5378A C14408T A20268G C22088T G22894A A23403G C25886T G28198T C28833T G28851T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569092
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2706T C3037T C14408T A20268G A23403G C25731T G27463C C28833T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569093
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1912T C3037T G5210A C14408T C15324T C17470T C21191T A23148G A23403G T27125C C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569097
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCA1- C241T T445C C3037T G4006T C5170T G5504A C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_569098
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T445C C3037T G4006T C5170T G5504A C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569100
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T TAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29775-

EPI_ISL_569101
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29785-

EPI_ISL_569102
 2020-08-17 2020-10-02
 France hCoV-19/France/IHU-1268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28086T G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569623
 2020-08-17 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A20268G A23403G C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_569624
 2020-08-17 2020-10-02
 United States hCoV-19/USA/SD-SDPHL-0016/2020
 C241T C3037T C4582T G6536T C13119T C14408T G15982T G19816T A20268G C21575T A23403G T25580C G25593T C26060T G26466T G29690T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

MT947153
 2020-08-17 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-S031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947154
 2020-08-17 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-S032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947155
 2020-08-17 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-S033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947156
 2020-08-17 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-S034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947157
 2020-08-17 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-S035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947158
 2020-08-17 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-S036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947159
 2020-08-17 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-S037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947160
 2020-08-17 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-S038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947161
 2020-08-17 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-S039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947162
 2020-08-17 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-S040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947163
 2020-08-17 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-S030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_526430
 2020-08-18 2020-09-01
 United Kingdom hCoV-19/England/NOTT-112F67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T C23277T A23403G C23731T T27428G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526622 MT956746
 2020-08-18 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1136/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T C6027T C6548T T10513C C11514T C12171T G12478T C14408T C19273A T19839C C21108T A23403G C25207T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526623 MT956747
 2020-08-18 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1137/2020
 ATTAAAGGTTTA1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526624 MT956748
 2020-08-18 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526625 MT956749
 2020-08-18 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1139/2020
 ATTAAAGGTT1- C241T C3037T G3053T G7936T C14408T C23185T A23403G C25156T G27598A C27679T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526626 MT956750
 2020-08-18 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1140/2020
 A1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C22264T A23403G G25019T G25563T G25907T C27964T C28472T C28869T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_526627 MT956751
 2020-08-18 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1141/2020
 ATTAAAGGTTTA1- C241T C1519T C3037T T7171C T14382C C14408T T22843C A23403G C25452T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_526628 MT956752
 2020-08-18 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1142/2020
 ATTAA1- C241T C3037T T14382C C14408T C19102T T22843C A23403G C25452T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526629 MT956753
 2020-08-18 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1143/2020
 ATTAA1- C241T C3037T C9474T T14382C C14408T T22843C A23403G C25452T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526630 MT956754
 2020-08-18 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1144/2020
 ATTA1- C241T C1519T C3037T T14382C C14408T T22843C A23403G C25452T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526631 MT956755
 2020-08-18 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1145/2020
 AT1- C241T C3037T T14382C C14408T C19102T T22843C A23403G C25452T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_529224
 2020-08-18 2020-09-10
 United Kingdom hCoV-19/England/CAMB-1B5BDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1620G C3037T C4002T T5393C G5425T A6604G G10097A C13536T C14408T TACATG21765- A23403G C23731T G23948C C27059T G27459T A28356G GGG28881AAC G29825T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529674
 2020-08-18 2020-09-10
 United Kingdom hCoV-19/England/PORT-2D40F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A6058G A9162G C14408T C18252T A23403G G23593T C26858T G28396A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529699
 2020-08-18 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169CA6/2020
 ATTA1- C241T C1059T C1594Y C3037T A6400G C11575T C13536T C14408T C16111T G18255T A23403G G23580K T24849C G25273C G25477T G25563T C25708T CA28253TM G28812T G28904A

EPI_ISL_529701
 2020-08-18 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169CC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_529702
 2020-08-18 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169CD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_529703
 2020-08-18 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169CE2/2020
 ATTAAAG1- C241T C1059T C3037T A6400G C11575T C13536T C14408T C16111T G18255T A23403G T24849C G25273C G25477T G25563T C25708T C28253T G28812T G28904A

EPI_ISL_530166 MT997688
 2020-08-18 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A696C C3037T G3871T T3931C C6285T C14016T C14408T C19524T C20178T C20429T A23403G G24770T C26028T G28347A C28977T G29736T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530168 MT997690
 2020-08-18 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1572/2020
 ATTAAAGGTT1- C241T T2911C C3037T C10376T C11916T C14408T C18486T A20268G C21575T T22162C A23403G C28854T A29369C GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530169 MT997691
 2020-08-18 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C7788T C14408T A20268G C20759T A22456G A23403G C23454T T24076C A28359G C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530403
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E08F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11842A A12759G G13459T C14408T G18292T A20268G A23403G G26450T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530415
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96EED0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6367T G11083T A12599G C14408T C20703T C21058T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530418
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E30E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530424
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96EFEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A21163G A23403G A25235T GGG28881AAC C29137Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530430
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96F0AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C4965T A8072G C14408T A16011G A21213G T22334A A23403G A25759G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530434
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DFDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G27261K G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530453
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96E78A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T C17999T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530458
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530474
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E7E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530477
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DFFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C10449T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530508
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530511
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DF74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8763G C14408T C21575T A23403G C24023T T27555A GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530518
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DED1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11563T C14408T A23403G G25617T G28376A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530531
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DE86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T C8950T G9805T C14408T C18526T G21255C C22227T A23403G T25248C T25519C C26801G C27944T C28932T G29477T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530557
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96F006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C4965T A8072G C14408T A16011G A21213G T22334A A23403G A25759G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530562
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96E18C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530576
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96F09D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530582
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DEE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T931W C3037T C12924Y C14408T A23403G G25507R G25617T G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530607
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T G19735T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530609
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96F033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530613
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530618
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E09E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T C25721Y A26760T C27406Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530635
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D2D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T C25916T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530696
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D18D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23423T C23730T G25563T A26319G C28854T G29044A C29632Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530697
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D26C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2453T C2710T C3037T C14408T G22918T A23403G T28250C G28396A GGG28881AAC C29203Y G29227A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530737
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3259T C3961T C5192T C12778T C14408T C15848T A23403G C25549T CA28253TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530748
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DE59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G G25249S G25494K C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530793
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E0AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T383C C3037T C5055T G11851T C14408T C14786T A20262G A23403G G24812T C26895T C28253Y G28817T GGG28881AAC G29573A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530801
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C679A C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T C25413T G25563T A26319G C27513Y C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531321
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96B1BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531330
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96AE5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531349
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B19E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T A23403G G25617T G28509A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531407
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96B1AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T G2381K C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531432
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96B161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_531442
 2020-08-18 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96B1F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534453
 2020-08-18 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534480
 2020-08-18 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96EF28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534486
 2020-08-18 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96EF64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534502
 2020-08-18 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E1AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534506
 2020-08-18 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E8E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534645
 2020-08-18 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C9988T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C26889T GGG28881AAC G28925A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534668
 2020-08-18 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96B0EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G G9802T C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535586 LR881882
 2020-08-18 2020-09-15
 Switzerland 250060_864_C04
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G571R G1186A C3037T C3738T C4543Y T6914Y T7033Y T7035W G9130K G9526K A11201R C11497Y G13993K C14408T G15766K C16111Y A16889R G17019K C18877Y G22992R A23403G A24003M G25563K C26735Y T26876Y T27319Y G28487R C28868Y GGG28881RRS G28975S G29399R G29706K C29724Y G29757K G29810K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535587 LR881880
 2020-08-18 2020-09-15
 Switzerland 250061_864_F09
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1471T C1862T C3037T T3144K C4331T G5230T A6925W C7765T C10765T C12809T C14408T C17883T G20730T A23403G C23481T G25217T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535590 LR881874
 2020-08-18 2020-09-15
 Switzerland 250064_866_G04
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C5175T G6981K G11842A A12759G C14408T G18292T A20268G C22987T A23403G C28409Y C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535593 LR881879
 2020-08-18 2020-09-15
 Switzerland 250068_867_B12
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3602T C6941T G6977R C14408T C15324T C21855T A23403G A25121W A25505G G25906S G25996T C28651T C28869T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535595 LR881870
 2020-08-18 2020-09-15
 Switzerland 250070_869_C09
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C512T T576Y A642W T2584Y G3013R C3037T A3046W C3140Y G3548R T7023Y A11782G C14408T A16210W G16246K T21570K C21575T A23403G T25473C G26428K T27176K C28253T T28297C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535596 LR881876
 2020-08-18 2020-09-15
 Switzerland 250071_870_C05
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C T1330Y C3037T A3046R T3144K A3275R C3623M G3638R C4927Y T5473K A5475R G5846R C5856Y C6286T A6346R G6710K T6908W T7497Y G8111R G9817K A9883R T10076W C10556Y C10820Y T11233Y G11722K C14408T C15045Y A16214R T16456K G16945R A17271R T17652Y T18059Y C20095M T20661C G21255C G21468T T21760Y C21897Y C22227T A23403G C25714Y C26801G G26925R T26999Y C28021Y C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535602 LR881871
 2020-08-18 2020-09-15
 Switzerland 250080_873_D10
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3112Y G3135R T3144K C3602T C6941T C7029Y C14408T C15324T C21855T A23403G A25505G G25906S G25996T C28651T C28869T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_536587 MW035385
 2020-08-18 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C G11083T C14408T C16017T A21137G A23403G G25963A G26199T C27923T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536594 MW035392
 2020-08-18 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536595 MW035393
 2020-08-18 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T T833C C1059T C3037T C4780T C7834T T11371C C14408T G15438T C18555T T20028C A23403G G24933T G25563T G25906T C27964T C28311T C29284T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536610 MW035408
 2020-08-18 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29679T C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536615 MW035413
 2020-08-18 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A A9085G C10319T C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536618 MW035416
 2020-08-18 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T9721C C12025T C14408T T19839C C19955T C21575T A23403G C23707T G25302T G25906T GGG28881AAC C29218T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536624 MW035422
 2020-08-18 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T711C C3037T A5106C G8006A G8179T C9907T A10042G T12094C C14408T C16049T C18189T C18246T A20262G A23403G GGG28881AAC C29025T G29477T G29734A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539609
 2020-08-18 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T C4890T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539610
 2020-08-18 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C18788T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539702
 2020-08-18 2020-09-19
 India hCoV-19/India/TG-CCMB-AC214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T A4372G C5700A C9693T C14408T C16626T C16779T A23403G G23593T A25958G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539843 MW020080
 2020-08-18 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A696C C3037T G3871T T3931C C6285T C14016T C14408T C19524T C20178T C20429T A23403G G24770T C26028T G28347A C28977T G29736T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_539844 MW020081
 2020-08-18 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A696C C3037T G3871T T3931C C6285T C14016T C14408T C19524T C20178T C20429T A23403G G24770T C26028T G28347A C28977T G29736T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_539846 MW020083
 2020-08-18 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A696C C3037T G3871T T3931C C6285T C14016T C14408T C19524T C20178T C20429T A23403G G24770T C26028T G28347A C28977T G29736T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_540236
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-96FFEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C512Y C3037T T7767C C8047T G12988T C14408T G15598A C17104T C17999T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540251
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-96FF27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540254
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-96FFFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C A27095T C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540264
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-96FE75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C12781T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540266
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F956/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540267
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-96FF63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C4965T A8072G C14408T A16011G A21213G T22334A A23403G A25759G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540269
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-96FCB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540277
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-96FBAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T C17999T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540279
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-96FB9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540283
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FC8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T G20893T C22388T A23403G G24770A C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540286
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-96FCA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T C17999T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540292
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-96FDB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8870C C14408T A23403G C24130T G25617T G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540293
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-96FD1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540296
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-96FBBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540299
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-97006C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540307
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-96FEFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540310
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-97004E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540314
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9700A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T C21762Y C22295Y A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540315
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-96F983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3239A G7042T G8382T T9370C C14408T C15324T T17142A T17688C C19164T G21334T T21889C G23162A A23403G C24130T G28655A G28881A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540317
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-96FE2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T T28334Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540318
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-96FE0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T209C C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G G25456K T26609C C26801G C28932T C29037Y G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540319
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FAEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A994G C3037T G4105T C4391A C11124T C13792T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540324
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-96FB8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T C17999T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540330
 2020-08-18 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96FF18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C15720T A15972G G16912T C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547712
 2020-08-18 2020-09-24
 United States hCoV-19/USA/WI-GMF-15909/2020
 ATTAAAGGTTTATACCT1- C241T A696C C3037T G3871T T3931C C5020T C6285T C7594Y C14120T C14408T C19524T C20429T C21639T A23403G C28977T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_547713
 2020-08-18 2020-09-24
 United States hCoV-19/USA/MN-GMF-15923/2020
 ATTA1- C241T C3037T C10376T C11916T C14408T C18486T A20268G C21575T T22162C A23403G GC27882SY C28854T A29369C TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_547715
 2020-08-18 2020-09-24
 United States hCoV-19/USA/WI-GMF-15985/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T G8083A A9085G C10319T C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T C27964T G28079K C28472T C28869T G29402T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547717
 2020-08-18 2020-09-24
 United States hCoV-19/USA/WI-GMF-16096/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G4720T C5339T C5893T C6040T C8140T C8208T C14408T C16260T C22329Y A23403G G25440T G25563T C28821A C29739Y AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548014
 2020-08-18 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G6352T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548015
 2020-08-18 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C4331T G10097A C11665T C13536T C14408T T15867G G19947T A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548016
 2020-08-18 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G6309T G10097A C11665T C13536T C14408T T15867G C20844T A23403G C23731T C25685T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548659
 2020-08-18 2020-09-26
 United States hCoV-19/USA/CA-CZB-4047/2020
 AT1- C44T C241T G443A C3037T C14408T C21614T T23042C A23403G G28378T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_549031
 2020-08-18 2020-09-28
 Norway hCoV-19/Norway/3199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C2113T C3037T A3120C A3472G A6798T C7765T G11521T G11527T C14408T G17523T C17690T C18877T A23403G G25563T C27509T A28959G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549175
 2020-08-18 2020-09-28
 Norway hCoV-19/Norway/3187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A6400G C11650T C13536T C14408T G15138T G18255T C18570T T21739C A23403G G25273C G25563T C28253T G28812T G29706A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551695
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-995702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551721
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-995711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552520
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-974DDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3818G C5055T G6744R G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552563
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-975173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G8236R G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553008
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-97172A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553009
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-9704BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27978T C28102T G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553010
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970B4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553012
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970E62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2449T C3037T C3923T C6429T C7600T C14408T C16289T A23403G C23551T G28048T G28183T GGG28881AAC A29567G G29703T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553014
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970A6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C14697T C15720T A15972G C16329T G16912T C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553016
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-970B98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553019
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-9714F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G5023T C6286T C14408T G21255C C22227T A23403G C25047G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553023
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-970A5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553024
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970DA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G4006T C5284T G5950T G10097A C11752T C13536T C14408T G19732T G20931T A23403G C23731T C24393T CAG28869AGA GGG28881AAC G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553029
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9712B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553031
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-9718BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C11208T C14408T T20653C C21637T A23403G G24368T G27376C A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553032
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-971836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T G6404T G10265A -11075TTT G11083T C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29348T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553033
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970C68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553036
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970D38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C180T C241T G625T C3037T C13665T G13759T C14408T C15960T G16741T G20131A G20580T C22388T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553040
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970C2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C5907T C13247T C14408T C14937T T18144C A23403G C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553046
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-97099E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2453T C3037T C14408T G20062T A23403G G28396A G28851T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553053
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-9716E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T C22388T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553056
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970C95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C679A C2416T C3037T G8371T C9430T C14408T A15477T G18186T C18395T AGA20622TTT A23403G C23730T C25413T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553057
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970C3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C255T C3037T T7767C C8047T C9611T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T C26204Y T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553059
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-9704E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553061
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970C0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G526K G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T C21646T C21846T A23403G C24844A C26464T GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553063
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-97170C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T C22388T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553072
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T G25726T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553077
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-97065B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26309T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553081
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-9709BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553087
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9713EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553088
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970934/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553089
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970CFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553094
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-971238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4510T C6941T C7195Y C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553097
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970B2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G19056T G21800T A23403G G25563T G27632T C27804T C28744T C28830A C28969T G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553098
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-9718DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4913K C5007T C7165T C14408T G14584A C14805T T15114C C15848T G20940T T22849C C22993G A23403G G23580C G26951C GGG28881AAC G29227K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553099
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970D65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553113
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-971195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3784Y T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- G21800T C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553115
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553116
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970A8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553117
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-971599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C6195T C8950T C14408T C19185T A20268G A23403G A23947G A24369T C27847T C28854T C29200T C29451T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553118
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-9711D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G105T C241T C367T C3037T C3096T A4687G C4927T C14408T G19549T G21255S A23403G C28093T C28603T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553120
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970CC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C19970T G21641T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553130
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-9704D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T C21855T A23403G A25505G A25866T G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553133
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970F9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553135
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-9709E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T C9611T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553137
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970C4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C5907T C13247T C14408T C14937T T18144C G21193T A23403G C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553141
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9715E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6941T C14408T C15324T A16044T A19505G C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553143
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-971687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C583T C3037T T3163C C4345T C14408T G17988T G22021T A23403G C25321T G25785T G26951C T27071C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553145
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970530/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553147
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-97064C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553152
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553156
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T A17495C C18877T G22992A A23403G G25563T C25710T G25726T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553158
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970EAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T G3187T C3924T C13665T C14408T C15960T G16741T G20131A G20580T C22388T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553161
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970D92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C4540T C6633T C14408T G17278T G18394T C18877T T20664C C22444T A23403G G23426T G24781T C24919T G25563T C26111T C26735T C27524T G28655T C28854T C29095T C29137T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553164
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970EEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553166
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-970B89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T T1456C C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553167
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970BF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T C21646T C21846T A23403G C24844A C26464T GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553168
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970D56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C180T C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T C22388T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553172
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-9713CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9142T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553179
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970AE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C5284T G5950T G10097A C11752T C13536T C14408T G19732T G20931T A23403G C23731T CAG28869AGA GGG28881AAC G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553188
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970BA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C8139T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553189
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-971845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553190
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-971308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T C6500T G11132T A13810G C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553192
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-9704F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553198
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970E08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21255C C22227T A23403G C26681T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553201
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970CE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G G25563T G26389T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553205
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970F41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553208
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970AF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C4540T C6633T C14408T G17278T G18394T C18877T T20664C C22444T A23403G G23426T C24919T G25563T C26111T C26735T C27524T G28655T C28854T C29095T C29137T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553209
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-97153F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G G26727K C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553214
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-971818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553222
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-97066A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C799T G1464A C3037T T7767C C8047T C9443T A10978T C14408T C17104T G18803T A20268G T20799C C22879A A23403G G25320T A26528G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553223
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9712DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553224
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-971247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23365G A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553226
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970A04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C22432T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553230
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553233
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-971739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5128G T6376A C14408T C16329Y C20474T A23403G G25012A C25728T C27509T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553245
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970DB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553249
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-971669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3937C G4399T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553254
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-9709CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C22432T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553256
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970D74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29543K G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553257
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970AB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T C11650T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553258
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-97061F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553259
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T G11083T C11514T T14313C C14408T G15652T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553260
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9715C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553268
 2020-08-18 2020-09-28
 United Kingdom hCoV-19/England/MILK-970521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561283
 2020-08-18 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T G12718A C14408T C16575T A23403G C25904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562621
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC13772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C8650T C14408T G16647T A17337G C18555T C22858T G22992A G23401A A23403G -25700CCC GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562624
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC8076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G11083T C14408T C16222T G16647T A17337G C18555T C18917Y C22858T G22992A G23401A A23403G C24034T -25700CCC GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562634
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC -29452TCT CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_562673
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T23695C C27641M GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563142
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC10891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_563818
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC13734/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A3372G T7540C C14408T G16647T C18555T T19500C G22992A G23401A A23403G A25137C T26773C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564761
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC7942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29708T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564829
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC8067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564835
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC8077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564853
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC8107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564854
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC8108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T A4103G T7540C C14408T G16647T C18555T G18984T T22315C G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565087
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC8550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T A1318R C2227T C3037T T7540C C7600Y A13488G C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G C24897T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565126
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC8642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A13919M C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565380
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565431
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C1780T C3037T C5365T T7540C A12410G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565434
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C3738T C4832T T7540C C14408T G16647T C18555T C19170T G21800T G22992A G23401A A23403G C26571T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_565492
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565494
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565495
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G T26545C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565497
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T C18652Y G22992A G23401A A23403G C25916Y GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_565503
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9318/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTG1- C241T C920T A1163T C3037T T7540C T11541G C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_565524
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29311T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565536
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C16762T C18555T G22992A G23401A A23403G GGG28881AAC C29774Y TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_565547
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T G4907T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C27654T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565550
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565553
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565554
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T A2580W C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565555
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565556
 2020-08-18 2020-09-30
 Australia hCoV-19/Australia/VIC9444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T A20916R G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_566067
 2020-08-18 2020-10-01
 United Kingdom hCoV-19/England/203440490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C1912T C3037T G4180T T10453C C11195T C14408T A23403G T27815C GGG28881AAC C29835T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_568402
 2020-08-18 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96FDF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T G22604T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568403
 2020-08-18 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9700F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C5758Y C11653T G14202T C14322T C14408T G19542T C19718T C22388T C22687T A23403G C25239Y C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568406
 2020-08-18 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96FB7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C13517T C14408T G19735T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568411
 2020-08-18 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96FEEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G88R C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568413
 2020-08-18 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96FE66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568414
 2020-08-18 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96FEC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568416
 2020-08-18 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96FD78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G G9802T C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568417
 2020-08-18 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96FBC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568423
 2020-08-18 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96FD4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8296C C12076T C14408T C18877T G19846A C22227T G22332T A23403G G25563T G28690T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568425
 2020-08-18 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96FEB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2574T C3037T C6406T A7024G C9165T G11083T C13517T C14408T G20691T G21746A A23403G T24625A G28812T GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568426
 2020-08-18 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96FB05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568427
 2020-08-18 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96FE48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T T18723Y C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568429
 2020-08-18 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96FC99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C13517T C14408T G19735T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568430
 2020-08-18 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96FF45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_569103
 2020-08-18 2020-10-02
 France hCoV-19/France/IHU-1270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T A11782G C14408T A20003C T21570G C21575T A23403G C24083T C24138T T25473C C28253T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569106
 2020-08-18 2020-10-02
 France hCoV-19/France/IHU-1279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2706T C3037T C14408T A20268G A23403G C25731T G27463C C28833T G29734T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569107
 2020-08-18 2020-10-02
 France hCoV-19/France/IHU-1283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1912T C3037T G5210A C12005T C14408T C15324T C17470T C21191T A23148G A23403G T27125C C28854T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569109
 2020-08-18 2020-10-02
 France hCoV-19/France/IHU-1292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T T11127C G11851T C14230A C14408T G21800T G21941T A23403G G25563T C27630T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569113
 2020-08-18 2020-10-02
 France hCoV-19/France/IHU-1307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_526427
 2020-08-19 2020-09-01
 United Kingdom hCoV-19/England/NOTT-112F3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C920T C3037T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_526632 MT956756
 2020-08-19 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1146/2020
 AT1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_526633 MT956757
 2020-08-19 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1147/2020
 AT1- C241T C1059T C2536T C3037T A5368G C10376T C14220T C14408T C14931T G21193T A23403G C24082T G25563T C27005T A28880G C29363T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_526635 MT956759
 2020-08-19 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1149/2020
 ATT1- C241T C3037T G10465A T11675C C14408T T22843C A23403G C25452T C26010T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526637 MT956761
 2020-08-19 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1151/2020
 ATTAA1- C241T C2416T C3037T C14323T C14408T C16616T A23403G G25563T C26885T C27603T C28887T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_526638 MT956762
 2020-08-19 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1152/2020
 AT1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526643 MT956767
 2020-08-19 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1157/2020
 ATTAAAGGTTTATACCT1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_526644 MT956768
 2020-08-19 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1158/2020
 A1- C241T C2416T C3037T A10918G C14408T C16616T C17172A C18981T A23403G G25563T C26885T C27603T C28887T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526645 MT956769
 2020-08-19 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A363G C3037T C14408T G19800T T22843C A23403G C25710T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526646 MT956770
 2020-08-19 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1160/2020
 AT1- C241T C1059T C3037T G9300A C10319T C14408T G16710T G20176T A23403G A25121T G25563T C27964T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_529225
 2020-08-19 2020-09-10
 United Kingdom hCoV-19/England/CAMB-1B5CAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C GAGATG3302- C5622T G14202T C14408T C15656T G19542T C19718T C22388T A23403G C25587T C25613T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529251
 2020-08-19 2020-09-10
 United Kingdom hCoV-19/England/BIRM-637D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G G25720T C26078T C26527T G28083T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529252
 2020-08-19 2020-09-10
 United Kingdom hCoV-19/England/BIRM-637E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G G25720T C26078T C26527T G28083T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529649
 2020-08-19 2020-09-10
 United Kingdom hCoV-19/England/BIRM-637CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C2232T C3037T A3327G A3569G C3695T A6211G C7164T A8659G A9848G C13199A C14408T C19488T A21137G A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529650
 2020-08-19 2020-09-10
 United Kingdom hCoV-19/England/BIRM-6384F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T T28756C GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529694
 2020-08-19 2020-09-10
 United Kingdom hCoV-19/Scotland/EDB7373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530154 MT997243
 2020-08-19 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2797/2020
 ATTAAAGGTTTATAC1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C28854T ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_530225
 2020-08-19 2020-09-11
 Australia hCoV-19/Australia/QLD959/2020/P1
 AT1-G C241T A1163T C3037T T7540C C14408T G16647T C18555T G21666T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_530394
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96EC8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8870C C14408T G21520T A23403G C24130T G25617T G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530397
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96EACD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530423
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96EF19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11224T C11941T C12043T C12242T C14408T C18877T C22444T A23403G G25563T G26155T G26167T G26172T G26620T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530427
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96EB42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C936T C1960T C3037T C5301T G11083T C13247T C14408T C14937T T18144C A23403G C26681T G28857T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530428
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96E887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T G3639R C6286T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530432
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96EA45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T C17999T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530438
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96ECE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530439
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96EB06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530447
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96EAFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T A23403G G25617T C27286T G28509A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530449
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96E878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530451
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96EA90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530455
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96EE49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530463
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96E869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530464
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T C22224T A23403G C23731T C25624T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530470
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96EABE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8870C C14408T A23403G C24130T G25617T G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530480
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96EC12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C12896M C14408T C14786T A23403G G24812T C26895T GGG28881AAC C29197T G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530483
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96EEEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530486
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96EDA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530487
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96EC21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530489
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96E83C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530498
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96EE3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11704T C14408T C23191T A23403G G24000T GGG28881AAC C29119T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530507
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T C8311T G11851T C14408T C14786T C15237T G20580K A23403G G24812T C26464T C26895T GGG28881AAC G28907T C29197T G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530513
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96ECF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530515
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96EBAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T C22295T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530517
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96EDF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530520
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96EE67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530523
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96E9B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC C29197T G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530528
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96E8F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530534
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E6BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530536
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E9C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530541
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E5DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T G11521T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530544
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C218T C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530546
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96EA18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530551
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E9FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530552
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E9DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530553
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96EBF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T G22468A C23127T A23403G C25466A G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530560
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96ED2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530561
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96EA36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530570
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E80F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T G3483T G10097A T10992C C11001T T11857C T13670C C14408T A23403G C23731T C25624T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530583
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E7B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530596
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96E5CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530597
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96EB60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5000T C9430T G10540T T11737C C12823T T14289A C14408T A16920C A23403G C27092T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530601
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E90C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530611
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96EA72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530615
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E82D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT C21552T A23403G C23730T G25563T A26319G C27643T C28854T G29044A C29274T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530617
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96EAAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530620
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96EA09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530621
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96EE1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530629
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D19C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C12924T C14408T C21575T C21637T A23403G C23525T A28169G GGG28881AAC G29781T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530631
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D1BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530692
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D17E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T C29420T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530713
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530738
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A309G T772C T1905C C2005T A2869G C3037T G6352T C6445T C7267T C10868T C14408T C14741T G15652T A23403G G23438T G26062T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530758
 2020-08-19 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D0EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1397A C4784T C5544T G11083T T17139A G21082S A21085M T21087C G21724T A23403G G25726T A26059G A26528T T28297C T28688C C28932T C29311T G29742T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534217 MT997747
 2020-08-19 2020-09-11
 United States SARS-CoV-2/human/USA/MN-MDH-1629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A696C C3037T G3871T T3931C C6285T C14016T C14408T C19524T C20178T C20429T A23403G G24770T C26028T T27680- G28347A G28396T C28977T G29736T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_534258
 2020-08-19 2020-09-11
 Sweden hCoV-19/Sweden/20-52638/2020/P1
 C241T C3037T C7267T C9120T C14408T C18032T C20233T C21635T A23403G G24926T A27674T GGG28881AAC A29350G

EPI_ISL_534455
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E85A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G22014T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534456
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E8A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G C27644T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534459
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96EA54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534461
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E553/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T G17278K C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534462
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96EA63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534465
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96EBE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534470
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534471
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E66F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G G25621T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534472
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96EB15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534473
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96EB8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G ACA12780- C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534474
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534477
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96ECC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534482
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534483
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E6AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C186T C241T C3037T C5055T G10396T G11851T C14408T C14786T C16293Y G18985T A23403G C24382T G24812T C26895T GGG28881AAC C29642T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534484
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96ECD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534490
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96EDE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A544G A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534491
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96EBBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T G17561A C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534493
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534499
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E67E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534508
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534511
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96EB51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G G9802T C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534516
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534534
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T A18223G C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534630
 2020-08-19 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535598 LR881869
 2020-08-19 2020-09-15
 Switzerland 250075_872_C12
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G219T C241T C3037T G9130T C14408T C21595T A23403G C23991T T27319C G28487A C28868T GGG28881AAC G29440T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535599 LR881883
 2020-08-19 2020-09-15
 Switzerland 250076_872_E11
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T A1236G C3037T T3071Y T3144K C3738T GG6960KK G9130T C14408T C16111T A16210W A16345R A23403G T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535604 LR881889
 2020-08-19 2020-09-15
 Switzerland 250085_876_D01
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5554T G6894R A6925W C14408T G19891T C20736T C21575T C22938A A23403G C24034T G25249T G26152T C27532Y G28321T GGG28881AAC C29614T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535606 LR881891
 2020-08-19 2020-09-15
 Switzerland 250087_877_A06
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C466Y C3037T T3144K T3532W C3602T A6888R C6941T A6970M C14408T C15324T A16210W C21855T A23403G A25505G G25906S G25996T C28651T C28869T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535607 LR881890
 2020-08-19 2020-09-15
 Switzerland 250088_877_B09
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C125Y C241T C3037T C5175T G11842A A12759G C14408T G18292T A20268G T22967K C22987T A23403G C28409Y C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535608 LR881896
 2020-08-19 2020-09-15
 Switzerland 250090_877_C10
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A3063W T3144K C3373A C5688Y G6881R C7006Y C8888Y C14358T C14408T A23403G C25413T C25487Y GG25690TT T27134C G27214R GGG28881AAC G29321T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535610 LR881894
 2020-08-19 2020-09-15
 Switzerland 250092_878_D07
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A7451G G10265A C14408T C15720T A15972G C16308T C19718T A23403G C23557Y G26700T T28759Y GGG28881AAC G29348T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535612 LR881893
 2020-08-19 2020-09-15
 Switzerland 250096_879_G05
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T T517Y G2921K C3037T A3558M C5654T C6927Y C6968Y A10225G C14408T A16210W G17462R T17486W A17653R G18180A C20371A C21736Y A23403G GGG28881AAC C29730T G29736K T29856Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535614 LR881888
 2020-08-19 2020-09-15
 Switzerland 250098_881_G01
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A2905W C3037T T3144K C3583M T3657K T3694Y T3772W C3784M A3801R A3820W C6310T A6948M G9130T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29706T G29764R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_536586 MW035384
 2020-08-19 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C21304T A23403G G25563T G25907T C27689T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536596 MW035394
 2020-08-19 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G A25864G T27901C C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536612 MW035410
 2020-08-19 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19542T G19816T C19979A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536616 MW035414
 2020-08-19 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A A9085G C10319T C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T C27684T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536621 MW035419
 2020-08-19 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G315T C3037T A6985T G7393T C9319T G10835A C12412T T14313C C14408T G14874T C19662T G21220T A23403G C25613T GGG28881AAC T29317C A29385C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539611
 2020-08-19 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539619
 2020-08-19 2020-09-19
 India hCoV-19/India/TG-CCMB-AC539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2325T C3037T G4354A C6573T A12547T C14408T AA21550CT A23403G C25207T C25528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539642
 2020-08-19 2020-09-19
 India hCoV-19/India/TG-CCMB-AC437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G3774A G4354A C6573T C14408T G17944T AA21550CT A23403G C25528T C25693T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539658
 2020-08-19 2020-09-19
 India hCoV-19/India/TG-CCMB-AC284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3040T G4354A C6573T C9120T C10189T A10486G C14408T AA21550CT A23403G C24904T C25528T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539659
 2020-08-19 2020-09-19
 India hCoV-19/India/TG-CCMB-AC434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4354A C6573T C10029T C14408T G16153A C19011T AA21550CT A23403G C25528T A26555C GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539673
 2020-08-19 2020-09-19
 India hCoV-19/India/TG-CCMB-AC377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G914A C3037T G4354A C6573T C10977T C14408T C16726G C17135T C18486T A23403G C24904T C25339T C25528T C25886T C26801T T28306C GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539700
 2020-08-19 2020-09-19
 India hCoV-19/India/TG-CCMB-AC568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T G1857T C3037T A4372G C5700A C9693T C14408T C16111T C16626T T17137C AA21550CT A23403G C26111T GGG28881AAC C29451T G29648T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539717
 2020-08-19 2020-09-19
 India hCoV-19/India/TG-CCMB-AC317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T G3871T A4372G C5700A C9693T C14408T C14422T C15342T C16626T AA21550CT C21646T A23403G C25460T G26262T G28326T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539723
 2020-08-19 2020-09-19
 India hCoV-19/India/TG-CCMB-AC314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C1473T C3037T C5700A A13211G C14408T T18771C AA21550CT T21745C A23403G C26091T G27621T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539727
 2020-08-19 2020-09-19
 India hCoV-19/India/TG-CCMB-AC475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T C5700A C9693T C10815T C11173T C14408T C16626T C16675T A18941C AA21550CT A23403G C24863T T25640C G28727T GGG28881AAC G29474T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539737
 2020-08-19 2020-09-19
 India hCoV-19/India/TG-CCMB-AC338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C106T C241T C313T C2070T C3037T C4084T A4372G C5700A C6286T C9693T C12396T C14408T G14653T C16626T C17850T C22747T A23403G C23812T G28580T GGG28881AAC G29757T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539741
 2020-08-19 2020-09-19
 India hCoV-19/India/TG-CCMB-AC391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1912T C2836T C3037T T8740C C9042T C14408T G18449T C18877T G19962T AA21550CT C22444T A23403G G25563T C26735T G27777T C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539744
 2020-08-19 2020-09-19
 India hCoV-19/India/TG-CCMB-AC511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1701A C3037T C3177T C3267T C13207T C14408T C18877T C21034T C22444T T22882G A23403G G25563T G26173T C26735T G28183T T28277C C28854T A29237T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_539784
 2020-08-19 2020-09-20
 Ecuador hCoV-19/Ecuador/USFQ-209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10323G C14408T A20268G A23403G

EPI_ISL_539849 MW020086
 2020-08-19 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A696C C3037T G3871T T3931C C6285T C14016T C14408T C19524T C20178T C20429T A23403G G24770T C26028T G28347A C28977T G29736T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_540233
 2020-08-19 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-96F73E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540243
 2020-08-19 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-96F798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540257
 2020-08-19 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-96F604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540336
 2020-08-19 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-96F613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540340
 2020-08-19 2020-09-21
 United Kingdom hCoV-19/England/QEUH-96F877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540568
 2020-08-19 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C21855T C22680T A23403G A25505G G25906C G25996T C28651T C28869T C29362T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540569
 2020-08-19 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6696T C6941T C14408T C15324T C21855T A23403G G25455T A25505G G25906C G25996T C26208T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541934
 2020-08-19 2020-09-23
 Spain hCoV-19/Spain/MD-IBV-99007164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T445C C1102T C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548008
 2020-08-19 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548009
 2020-08-19 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548010
 2020-08-19 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C5812T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548011
 2020-08-19 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548017
 2020-08-19 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G T17781C A23403G C23731T C25685T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_549029
 2020-08-19 2020-09-28
 Norway hCoV-19/Norway/3197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T CC6285TT A10770G G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550200
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T C6445T G8572T T10006C C10868T C14408T G15652T C17288T A23403G G23438T C25482T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550206
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C64T C241T C1594T C3037T T4640C C5512T C6195T A6625G C9246T C11109T C12415T G14335T C14408T C17750T G17790T T19159G A23403G G25305A G25563T G25565A T27342C G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550236
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550247
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A82FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G2305T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C23481T C26801G G27478T C27944T G28368T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550254
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T C6445T G8572T T10006C C10868T C14408T G15652T C17288T C18115Y A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552455
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-97500D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10933C G11447A C14408T C21648T A23403G G24574A C25728T G27461T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552494
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-974ED7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A G11113K A11476G C13887T C14408T C21639T A23403G G23593T C23731T G25437T T28053Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552571
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-97503A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552586
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-974EE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A A11476G C13887T C14408T C21639T A23403G G23593T C23731T G25437T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552619
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-9755C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C8293T C9724T A10323G C14408T C15848T C16084T C19862T T19893C C21381T C23029T A23403G C26625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552628
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-97501C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10933C G11447A C14408T C21648T A23403G G24574A C25728T G27461T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552684
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-974F2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5704T T7767C C8047T C9430T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T A28855G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552759
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-975CFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G11743K C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553106
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-971326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TGGTTG519- T595C C3037T G5206T A8244G G8408A G12191T G12202T C14408T C19488T A23403G T26171A C28500T GGG28881AAC G29254A C29409T G29474T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553139
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-97055E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2676T C3037T T4100C C14408T T19839C G22132A A23403G A24696G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553176
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-971292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T C6445T T10006C C10868T C14408T G15652T C17288T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553197
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-971256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T595C C3037T A8244G G8408A G12191T G12202T C14408T C19488T G19518T A23403G G25687T T26171A C28500T GGG28881AAC G29254A C29409T G29474T G29736T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553217
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-971371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T A8310R G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553220
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-971344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C8139T C14408T G21255C C22227T G22346T C22377T A23403G G25523T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553253
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-971362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_553263
 2020-08-19 2020-09-28
 United Kingdom hCoV-19/England/MILK-971335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560799
 2020-08-19 2020-09-29
 United States hCoV-19/USA/MN-MDH-1712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G626A C1059T A2491G C3037T C3411T C5512T T6394C C8683T C10319T C14408T C20938A A23403G G25563T C27964T C28887T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_562169
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C9611Y C14408T G16647T C18555T C20806Y G22520A G22992A G23401A A23403G C27577T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562629
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C8650T G11745K C14408T G16647T A17337G C18555T C22858T G22992A G23401A A23403G -25700CCC GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562632
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C8650Y C14230T C14408T G16647T A17337G C18555T C22858T G22992A G23401A A23403G -25700CCC GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562675
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18377T C18555T C22480T G22992A G23401A A23403G T23695C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_562676
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T A15942G G16647T C18555T C22480T G22992A T23097Y G23401A A23403G T23695C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562698
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T C25976T GTTCTA28090- A28254M GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564925
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC8278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564927
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC8281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T670Y A1163T C3037T T7540C T9013C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564931
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC8304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C7834T C14408T G15789T G16647T C18555T G22992A G23401A A23403G C25071T C25207T AG28877WS GGG28881AAC G29449T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_565051
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC8495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T6976Y T7540C C14408T C14919T G16647T C18555T C22498T G22992A G23401A A23403G A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565052
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC8496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565053
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC8497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C T9013C C14408T G16647T C18395Y C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565389
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3644R T7540C C13019Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565391
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25511Y GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565392
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A18448R C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565398
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565400
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C C28291T GGG28881AAC C29274A CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565428
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C13019Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565429
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C13019Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565430
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T C14768T G16647T C18555T C18657T A21137G G22992A G23401A A23403G T23677A C23895T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_565433
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18814T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565435
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T A19515G C22480T G22992A G23401A A23403G C24096T C27059T C28087T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565507
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565508
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21034G G22520A G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565522
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565532
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C3738T C4832T T7540C C9491T C14408T G16647T C18555T C19170T G21800T G22992A G23401A A23403G C26571T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565534
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2227T C3037T T7540C A13488G C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G C24897T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565537
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C66T C241T A1163T C3037T T7540C C11109T C14408T C14657Y G16647T C17850T C18555T G22992A G23401A A23403G C27536Y GGG28881AAC C29108Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565538
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C1722T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G G23417A C27059T C28087T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565539
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T T21579G G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565543
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8299Y C14408T G16647T C18555T G22992A G23401A A23403G T26773C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565568
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565570
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T T7540C T13177C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565584
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C G27390K GGG28881AAC C29546Y CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565585
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565586
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C G27390T GGG28881AAC G29017C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565592
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565618
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_565619
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C10030A C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565620
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9600/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C1960Y C3037T C6033T T7540C C14408T C14980T G16647T C18555T C18568T G22992A G23401A A23403G C23457A C24026T GGG28881AAC C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565649
 2020-08-19 2020-09-30
 Australia hCoV-19/Australia/VIC9677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G18859K G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568404
 2020-08-19 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96F6B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568418
 2020-08-19 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-96F6AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_569119
 2020-08-19 2020-10-02
 France hCoV-19/France/IHU-1329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9142T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T C23086T A23403G G25563T G27632T C27804T C28830A G29402T G29779T GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_569120
 2020-08-19 2020-10-02
 France hCoV-19/France/IHU-1333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G20113T C22432T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29425T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569121
 2020-08-19 2020-10-02
 France hCoV-19/France/IHU-1334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T C7735T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569123
 2020-08-19 2020-10-02
 France hCoV-19/France/IHU-1336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- A235G C241T C3037T C5055T C10594T G11851T A12755G C14408T C15495T A23403G G24812T C26895T G28077T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569124
 2020-08-19 2020-10-02
 France hCoV-19/France/IHU-1337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569125
 2020-08-19 2020-10-02
 France hCoV-19/France/IHU-1340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T T8743C C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G16377T G16647A G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569126
 2020-08-19 2020-10-02
 France hCoV-19/France/IHU-1341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9142T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T T21649C G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569127
 2020-08-19 2020-10-02
 France hCoV-19/France/IHU-1342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T445C C3037T G4006T C5170T G5504A C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569128
 2020-08-19 2020-10-02
 France hCoV-19/France/IHU-1344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9142T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T T21649C G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569129
 2020-08-19 2020-10-02
 France hCoV-19/France/IHU-1345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2706T C3037T C11902T C14408T A17233G A20268G A23403G C25731T G27463C C28833T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569132
 2020-08-19 2020-10-02
 France hCoV-19/France/IHU-1348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGC1- C241T C3037T A11782G C14408T C21057T T21570G C21575T A23403G T25473C C28253T GGG28881AAC CGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29754-

EPI_ISL_569133
 2020-08-19 2020-10-02
 France hCoV-19/France/IHU-1349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T G16741T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569134
 2020-08-19 2020-10-02
 France hCoV-19/France/IHU-1350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C2706T C3037T C14408T A20268G A23403G C25731T G27463C C28833T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_526583 MT956684
 2020-08-20 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1097/2020
 ATTA1- C241T C1288T G1298A C3037T C14408T C18877T A23403G G25445T G25563T G28851T G29254T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_526649 MT956773
 2020-08-20 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T A2653T C3037T C7279T G8171A C9474T C14408T A23403G A25448G G25563T G25913A C27964T A28159G C28833T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526652 MT956776
 2020-08-20 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1166/2020
 ATTAA1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C26571T C27964T C28472T C28869T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526653 MT956777
 2020-08-20 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T G1298A C3037T G12694A C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526660 MT956784
 2020-08-20 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1174/2020
 AT1- C241T C3037T G6056A T14382C C14408T T22843C A23403G C25452T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_526661 MT956785
 2020-08-20 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T14382C C14408T C19102T T22843C A23403G C25452T GGG28881AAC TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_526662 MT956786
 2020-08-20 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1176/2020
 ATTA1- C241T C3037T G6056A T14382C C14408T T22843C A23403G C25452T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_526663 MT956787
 2020-08-20 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T14382C C14408T C19102T T22843C A23403G C25452T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_527361
 2020-08-20 2020-09-03
 Singapore hCoV-19/Singapore/852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTG1- C1912T C2695T C6310A C6312A C7834Y G11083T C13730T G17427T C19524T G20679T C23185T C23929T G26152A A27663G G28079T C28311T AAAAAAAAAAAA29892-

EPI_ISL_527373
 2020-08-20 2020-09-03
 Singapore hCoV-19/Singapore/864/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACT1- T2029A A3061G C6310A C6312A C7851T T8838Y G10496A G11083T C13730T C15017Y C19524T T19896Y T20504Y C23929T C28311T C28511Y AAAAAAAAAAAA29892-

EPI_ISL_527374
 2020-08-20 2020-09-03
 Singapore hCoV-19/Singapore/865/2020
 ATTA1- T2029A A3061G C6310A C6312A C7851T T8423W G10496A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_527812
 2020-08-20 2020-09-05
 Ecuador hCoV-19/Ecuador/USFQ-196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T T3793C C14408T A23403G A26530G

EPI_ISL_527813
 2020-08-20 2020-09-05
 Ecuador hCoV-19/Ecuador/USFQ-197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3215G C14408T G15438T A20268G A23403G C29870A

EPI_ISL_527814
 2020-08-20 2020-09-05
 Ecuador hCoV-19/Ecuador/USFQ-199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T T3793C C14408T A23403G A26530G

EPI_ISL_527817
 2020-08-20 2020-09-05
 Ecuador hCoV-19/Ecuador/USFQ-204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3130T T3793C C14408T A23403G A26530G

EPI_ISL_529626
 2020-08-20 2020-09-10
 United Kingdom hCoV-19/England/BIRM-628C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529651
 2020-08-20 2020-09-10
 United Kingdom hCoV-19/England/BIRM-638A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C25728T C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529654
 2020-08-20 2020-09-10
 United Kingdom hCoV-19/England/BRIS-133C3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C2232T C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529655
 2020-08-20 2020-09-10
 United Kingdom hCoV-19/England/BRIS-133C5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C2232T C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529717
 2020-08-20 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169FAD/2020
 ATTAAAGGTTTATACCT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T A29903-

EPI_ISL_529774
 2020-08-20 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002780/2020
 ATTAAAGGTTTATACC1- C241T C3037T G4255A A7064G C14408T C21108T C22675T A23403G G23608T T27384C GGG28881AAC G29737T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_529776
 2020-08-20 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2676T C3037T T12503C C14408T A23403G C28674T GGG28881AAC C29721T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_529777
 2020-08-20 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T T12503C C14408T G15451A C15714T C17212T A23403G C26625T C27509T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_529796
 2020-08-20 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002802/2020
 ATTAAAGGTTTA1- C241T C3037T G10637A C14408T A23403G T25695G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_530245
 2020-08-20 2020-09-11
 Australia hCoV-19/Australia/QLD1003/2020/P1
 ATTAAAGGTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G21666T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_530246
 2020-08-20 2020-09-11
 Australia hCoV-19/Australia/QLD1005/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G21666T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_530247
 2020-08-20 2020-09-11
 Australia hCoV-19/Australia/QLD1006/2020/P1
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G21666T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_530248
 2020-08-20 2020-09-11
 Australia hCoV-19/Australia/QLD1007/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C9214T C14408T G16647T C18555T G21666T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_530249
 2020-08-20 2020-09-11
 Australia hCoV-19/Australia/QLD1008/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G21666T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_530410
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96E0BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C5184T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530411
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T G11083T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530452
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96E4DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T A1163T C2094T T2899C C3037T C5497T C7423T C12073T C14408T C16762T G20238T A23403G C25904T G26211T GGG28881AAC G28903T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530462
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E2D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530468
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96E25C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G8179A G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530488
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96E16E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530496
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E3D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11704T C14408T C23191T A23403G G24000T GGG28881AAC C29119T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530542
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96E41A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530554
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E2B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530559
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G970A A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T G20893T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530573
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E40B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T G11083T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530598
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E27A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C936T C1960T C3037T C5301T G11083T C13247T C14408T C14937T T18144C A23403G G25785T C26681T G28857T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530599
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96E22F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G970A A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T G20893T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530624
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96D624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T T27851A G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530626
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96D633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G G27930A C27944T C28253Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530638
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DACE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T C26256T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530643
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530648
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96D3A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G25567A C28849G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530650
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DCAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530653
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DA37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530662
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DB8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530669
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DA28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530670
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DB34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530671
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530672
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DAEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530673
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96D4C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530685
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DD10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530690
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DB16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A C6361Y G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530691
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DA91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530700
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DD3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530703
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DB9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530706
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DB25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T G18255K A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530709
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DC7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530710
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DCC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530712
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DC40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11074T C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530716
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DC5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C G9049T C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530718
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DB61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27534C G28851T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530723
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D7C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530724
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DCE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T G6622C C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC G29688K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530727
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D84C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C904T C3037T C8683T A11117R C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530729
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DAA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530730
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3773Y G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530733
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DA19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530739
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DD6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T TTAAAGTTTCCATTTGGAATCTTGATTACATCATA27266- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530751
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DBF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T G22205C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530756
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D5FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G377T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28313Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530757
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DA0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G10642K G12988T C14408T G15598A C17104T C17999T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T C26882Y T26972C C27800A C29721Y G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530764
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96D378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C15720T A15972G G16912T C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530766
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96D220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530767
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96D3C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C11514T T14313C C14408T G15652T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530772
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DC13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530774
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DADD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T T6322A G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C22432T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530776
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DA82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530777
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96D9C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530789
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DA46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530792
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96D5AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5572T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C C22879A A23403G G28375T C29632Y G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530794
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96DC6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530796
 2020-08-20 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DAFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7037T G9130T C14408T T20973A A23403G T27319C G28487A C28868T GGG28881AAC G29212T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534452
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E17D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G160A C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534457
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E33B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534458
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2471T C3037T C5055T G11851T G11926A C14408T C14786T G17523T G20616T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534463
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534467
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E4FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534469
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E1C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534476
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E26B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534481
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E32C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534489
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T A13810G C14408T G21255C C22227T A23403G C25355T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534495
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534498
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E1D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C15720T A15972G G16912T C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534500
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C15720T A15972G G16912T C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534501
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E4CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534505
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E1B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534507
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96E1F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G G9802T C14408T C21302T CG21304AA A23403G G25996T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534515
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D93A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534520
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D0CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G G11273K C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534521
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G ACA12780- C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534522
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G T27384C GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534530
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D78B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534536
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534537
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D6E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3372G C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534538
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D91C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534541
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534542
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534544
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96DBBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534545
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D42A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T G17561A C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534546
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96DBAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534548
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D5BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G G9802T G12310T C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534549
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534552
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D31E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T G2210A C3037T T3256C C5622T G14202T C14408T G17790A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534553
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CD6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C19586T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534554
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534555
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G T7048K C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534556
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534558
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D34B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2471T C3037T C5055T G11851T G11926A C14408T C14786T G17523T G20616T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534562
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D8E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G T27384C GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534563
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D68E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G ACA12780- C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534567
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D69D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G ACA12780- C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534572
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D4DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534574
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D3D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C835T C3037T C6286T C9745T C14408T G21255C C22227T A23403G C26681T C26801G C27944T C28045T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534575
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CFEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534578
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534579
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D92B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T G19735T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534580
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G G9802T C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534581
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534585
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534586
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CDD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534591
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D879/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G T27384C GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534593
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D40C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T A13810G C14408T G21255C C22227T A23403G C25355T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534597
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D721/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534598
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D85B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534605
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D75E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T G17561A C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534606
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534610
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D76D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534613
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D5CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534614
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D0F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G G9802T C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534615
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D35A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534619
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D7B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534625
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D4FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534627
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D6BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C10279T C14408T C21302T CG21304AA A21457M A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534628
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D67F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C13297T C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534637
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D32D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T G2210A C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534641
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D6F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G662K C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534642
 2020-08-20 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CF39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535615 LR881892
 2020-08-20 2020-09-15
 Switzerland 250099_882_C03
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C788T A2905W C3037T G3053K T3144K C7006M T8614Y G10265A G11083T C14408T C15720T A15972G A16210W C19718T A23403G G26700T C27972T T28759Y GGG28881AAC G29348T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535621 LR881900
 2020-08-20 2020-09-15
 Switzerland 250106_885_G02
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G6337T T7035W C7303T C9430T T11737C C12823T C14408T G19542T A21863R A23403G G25691T C26894Y C27092T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535623 LR881905
 2020-08-20 2020-09-15
 Switzerland 250108_886_A04
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G571A G1495K C3037T C3140M C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G21123K G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29757T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_535625 LR881908
 2020-08-20 2020-09-15
 Switzerland 250116_890_F10
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1513T C3037T C6286T T7034W C14408T G21255C C22227T G22346K C22377T A23403G G25593T C26801G C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_536588 MW035386
 2020-08-20 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4686T C6354T C6363T A10323G G13403T C14408T T15276A A23403G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536590 MW035388
 2020-08-20 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C96T C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C21304T A23403G G25563T G25907T C27689T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536591 MW035389
 2020-08-20 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T T3745C C9598T C11674T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536603 MW035401
 2020-08-20 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536604 MW035402
 2020-08-20 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C475T C1059T G2632T C3037T C5986T C12754T C14408T C15154T C20970T A23403G G25563T A28389T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536628 MW035426
 2020-08-20 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G A25864G T27901C C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_538505
 2020-08-20 2020-09-17
 Indonesia hCoV-19/Indonesia/JK-NIHRD-MI52885/2020
 ATT1- C180T C241T A1718G T1907C C3037T C3784T C5622T A6659G C14408T T21787C A23403G G25429T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_538509
 2020-08-20 2020-09-17
 Indonesia hCoV-19/Indonesia/JK-NIHRD-MI52946/2020
 ATTAA1- C241T C3037T A10564G C14408T A18001T C21638T A23403G C27657T G27659T GGG28881AAC TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_539615
 2020-08-20 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C18788T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539848 MW020085
 2020-08-20 2020-09-21
 United States SARS-CoV-2/human/USA/MN-MDH-1654/2020
 ATTAAAGGTT1- C241T C1288T C3037T C11050T C11514T C13426T C14408T C14937T G21893A C22783T A23403G C24904T T27597C GGG28881AAC A29056G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_541713
 2020-08-20 2020-09-23
 India hCoV-19/India/MH-NIV-172607/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C4455T C5700A T6800C C14408T T22242C A23403G T25887C GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_547718
 2020-08-20 2020-09-24
 United States hCoV-19/USA/WI-GMF-16189/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T C6990T A7837C C14408T G19677T AA21550MW A23403G G25947T C28977T G29744T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_547721
 2020-08-20 2020-09-24
 United States hCoV-19/USA/WI-GMF-16244/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G G25947T C28977T G29744T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547722
 2020-08-20 2020-09-24
 United States hCoV-19/USA/IA-GMF-16252/2020
 ATTA1- T9Y T11K C241T C601T A1777G C3037T T3289C C8389T C10232T G12832T G14209T C14408T T21826C A23403G G25563T G25939A G27915R A28349T A28877T G29402T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547723
 2020-08-20 2020-09-24
 United States hCoV-19/USA/WI-GMF-16264/2020
 ATTAAAGGTTTATACC1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G G25947T C28977T G29744T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548013
 2020-08-20 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_549030
 2020-08-20 2020-09-28
 Norway hCoV-19/Norway/3198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C676T C2416T C3037T G8371T C9430T C13721T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G G27556T C28854T G29044A C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551702
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-995641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3239A G7042T C14408T C15324T T17142A T17688C G21334T T21889C C23275T A23403G G25323T G28655A G28881A G29744T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552444
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174C C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C C25482T T26972C C27800A ATT28065- G28378T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552450
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975683/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A A16668R C17104T G18028T C19032T A20268G TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552451
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5007T G5206T A11991G C14408T G14584A C14805T T15114C C15848T G20940T C22993G A23403G G23580C G26951C G28362T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552453
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975C72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552454
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-974FC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552456
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975832/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552469
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975A5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G2305T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C23481T C26801G G27478T C27944T G28368T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552474
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-97560B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C11572T C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29348T C29523T G29766T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552475
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975A1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552477
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975A0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T G10870T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552491
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-97594E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T A8086G A9433T TAT9858- G10265A C12919T C14408T A19650G A23403G G24193T T24499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552493
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-974FA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T G22289T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552495
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-97593F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552497
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-97561A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552501
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975B1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G19729R G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552513
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552518
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552531
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-974E8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G T24376C G24812T G25906T C26895T GGG28881AAC G29140C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552536
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T C19032T A20268G TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552541
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9758D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C11620T C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552550
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9759D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9430T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552553
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-97588D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G G20718K TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552554
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9759A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2910T C3037T C4752T G11842A G12243T A12759G A13449G C14408T G18292T A20268G G21800T A23403G C25275T A27386G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552555
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975AF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C28801Y G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552569
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-974FD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552597
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1593T C3037T C12231T C12295A C13487T C14408T C19488T A23403G T26957C C27847T C28500T GGG28881AAC G29254A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552602
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-97598A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10933C G11447A C14408T C21648T A23403G G24574A C25728T G27461T T27863Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552604
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9756ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T T7127C C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29648T G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552609
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-974F7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C255T C3037T T7767C C8047T C9611T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552610
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9757F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T C19032T A20268G TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552623
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10933C G11447A C14408T C21648T A23403G G24574A C25728T G27461T T27863C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552624
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552627
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552632
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975656/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552633
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-974FE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- G21800T C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552634
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9751EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552635
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9750C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552641
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9750B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A309G T772C T1905C C2005T A2869G C3037T G6352T C6445T C7267T C10868T C14408T C14741T G15652T A23403G G23438T G26062T GGG28881AAC C29095T G29755T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552647
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-97587E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T A11983R C14408T C15324T A16044T C21855T G22104T A23403G A25505G G25906C G25996T C26333T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552656
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975A3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552660
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-97595D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T A8086G A9433T TAT9858- G10265A C12919T C14408T A19650G A23403G G24193T T24499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552661
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552663
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-975771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T G28314K C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552672
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-974E5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T T5065Y C6286T C7423T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552673
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9756A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T A11749R C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552674
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C5907T C13247T C14408T C14937T T18144C A23403G C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552675
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-974E9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552682
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A C28697T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552683
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-974F89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27739T C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552685
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9758F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552690
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9756FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T T19383C C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552692
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-97589C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552693
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-974E6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23365G A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552696
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552697
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9756B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1593T C3037T C12295A C13487T C14408T C19488T A23403G T26957C C27847T C28500T GGG28881AAC G29254A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552698
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9757DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A6058G A9162G C14408T C18252T A23403G G23593T C25791T C26858T G28396A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552700
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552701
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9751DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552702
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9750D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C14408T C15720T A15972G C19718T A23403G A24803G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552704
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9755FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C1059T C3037T C3099T G4960T C4965T C6070T C7303T G7393T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552709
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-9757CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G19824T G21255C C22227T G22346T C22377T A23403G C26801G C28846T C28932T G29645T G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552714
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-974F4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T G13126T C14408T C15324T A16044T C18946T C21855T G22104T C22530T A23403G A25505G G25906C G25996T C26333T C28651T C28869T G28878A C29218T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552747
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975FB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1313G G2764T C3037T C3602T C6941T T14332A C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552767
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975EB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G1439T C3037T C6286T C14408T C18747T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552772
 2020-08-20 2020-09-28
 United Kingdom hCoV-19/England/MILK-975D33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T G19735T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560792
 2020-08-20 2020-09-29
 United States hCoV-19/USA/MN-MDH-1705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G1135T C3037T T7767C G11087A C13264T C13452T C14408T T19158C C21161T A23403G C23604T G25273T G25455T G25563T C28744T G29402T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_562640
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC10894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T T21738C G22992A G23401A A23403G G24257T G28027T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562689
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC8284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G CAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAGA27689- GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562742
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562767
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC10025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_562769
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC10029/2020
 ATTAAAGGTTTATACCTTCCC1- C241T A1163T C3037T T7540C C13792A C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562784
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC10068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562812
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC10165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C4901Y T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G G25996S GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562897
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC10389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_563369
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC11431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G C26601T GGG28881AAC G29711C TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563380
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC11458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C T11541G C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC G29081T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563812
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC13708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563847
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC13829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A C24026T GGG28881AAC C29774T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564923
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC8266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564926
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC8280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565378
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3860T T7540C C14408T C15101T C15352T G16647T C18555T C18795Y C21812T G22992A G23401A A23403G G24992C A26162G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565386
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565387
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25511Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565388
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C25511Y GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_565393
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC C29614T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565397
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565411
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A C28256T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565420
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T C14768T G16647T C18555T C18657T A21137G G22992A G23401A A23403G T23677A C23895T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_565423
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26464A GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565439
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T C14768T G16647T C18555T C18657T A21137G G22992A G23401A A23403G T23677A C23895T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565444
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T4303C T7540C C9532T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565449
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T T21628C G22992A G23401A A23403G C23655T GGG28881AAC C29614T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565451
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC C29614T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_565453
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C9996T C14408T G16647T C17135T C18555T G22927T G22992A G23401A A23403G A28416T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565505
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9321/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21622T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565506
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C20132Y G20489K A21282G C21622T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565526
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A3372G T7540C C14408T G16647T C18555T T19500C G22992A G23401A A23403G A25137C T26773C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565531
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C5144T G7328T T7540C C14408T A16172G G16647T C18555T T21369C G22992A G23401A A23403G T28009C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565587
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565588
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T C5184T T7540C G9718K C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565594
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_565595
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22469C G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565636
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T9013C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565664
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T G19072T C22480T G22992A G23401A A23403G T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565666
 2020-08-20 2020-09-30
 Australia hCoV-19/Australia/VIC9711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_569137
 2020-08-20 2020-10-02
 France hCoV-19/France/IHU-1355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28086T G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569138
 2020-08-20 2020-10-02
 France hCoV-19/France/IHU-1357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_569139
 2020-08-20 2020-10-02
 France hCoV-19/France/IHU-1359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G23948T G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569140
 2020-08-20 2020-10-02
 France hCoV-19/France/IHU-1360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T445C C3037T G4006T C5170T G5504A C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569141
 2020-08-20 2020-10-02
 France hCoV-19/France/IHU-1362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T T8743C C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G16377T G16647A G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569142
 2020-08-20 2020-10-02
 France hCoV-19/France/IHU-1363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27942T G28086T G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_526664 MT956788
 2020-08-21 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1178/2020
 ATTA1- C21T C241T C1059T C3037T C3369T C5583T G8017T C14408T C16260T A23403G G25563T G28134A C28290T C28821A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526665 MT956789
 2020-08-21 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1179/2020
 ATTAAAG1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526666 MT956790
 2020-08-21 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1180/2020
 A1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526667 MT956791
 2020-08-21 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526669 MT956793
 2020-08-21 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1183/2020
 ATT1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526670 MT956794
 2020-08-21 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1184/2020
 ATTA1- C241T C2416T C3037T C3602T C6310T G11596T C14408T A16455C C16616T G16901A C20740A A23403G G25563T C26885T C27603T C28887T C29353T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526671 MT956795
 2020-08-21 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1185/2020
 A1- C241T C1059T A1146G C1385T G1738T C3037T G3242A C5184T C6026T C11916T C13487T C14408T T23221A A23403G C25433T C25465T G25563T C25791T G26918A C28087T C29741A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526672 MT956796
 2020-08-21 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1186/2020
 ATT1- C241T C1059T C3037T C5392T C9214T C9967T C12406T C14408T G15906T C18555T A23403G G25563T C28892T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526673 MT956797
 2020-08-21 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C1059T C3037T C5392T C9214T C9967T C12406T C14408T G15906T C18555T A23403G G25563T C28892T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_526674 MT956798
 2020-08-21 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1188/2020
 ATTAAAG1- C241T C2416T C3037T A7240C G11083T C14408T C16616T C21207T A23403G G25563T C26885T C27603T C27654T G28690T C28887T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_526675 MT956799
 2020-08-21 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1189/2020
 A1- C241T C3037T C14408T G17632T T18006G C18486T A20268G T22162C A23403G C28854T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_526677 MT956801
 2020-08-21 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1191/2020
 A1- C241T C3037T C14408T G17632T T18006G C18486T A20268G T22162C A23403G C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_527362
 2020-08-21 2020-09-03
 Singapore hCoV-19/Singapore/853/2020
 ATTAAAGGTTT1- C2245T C6310A C6312A T8731C G11083T C13730T C17802A C19524T C20468T C23929T C25511T C28311T A29517R AAAAAAAAAAAA29892-

EPI_ISL_529628
 2020-08-21 2020-09-10
 United Kingdom hCoV-19/England/BIRM-62901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7299T C10448T C11074T G11083T C14408T A20268G C21614T A23403G C28603T C28854T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529631
 2020-08-21 2020-09-10
 United Kingdom hCoV-19/England/BIRM-6295C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529632
 2020-08-21 2020-09-10
 United Kingdom hCoV-19/England/BIRM-6296B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C17934A A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529633
 2020-08-21 2020-09-10
 United Kingdom hCoV-19/England/BIRM-6297A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529652
 2020-08-21 2020-09-10
 United Kingdom hCoV-19/England/BIRM-638C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T C4084T A6211G A8659G A9848G C13199A C14408T C16393T C19488T A23403G C26527T T27671C C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529653
 2020-08-21 2020-09-10
 United Kingdom hCoV-19/England/BIRM-638F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529667
 2020-08-21 2020-09-10
 United Kingdom hCoV-19/England/NOTT-112FA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8650T C14408T C20320T G20477T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529763
 2020-08-21 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1288T C3037T C4002T C5548T T6649C G10097A C13536T C14408T G17592T C19983T A23064C A23403G C23731T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_529764
 2020-08-21 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002769/2020
 ATTAAAGGT1- C241T C2676T C3037T T12503C C14408T A23403G G28809T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529765
 2020-08-21 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1288T C3037T C4002T T5160C G10097A C13536T C14408T G17592T C19983T A23403G C23731T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_529766
 2020-08-21 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002771/2020
 ATTAAAGGTTTATACC1- C241T C3037T C3551T C10116T G11447A C14408T C22675T T22965C A23209G A23403G G26227T G27147T G28077T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_529767
 2020-08-21 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002772/2020
 C241T C289T C3037T C6762T T12503C C14408T G16397T A23403G G24914T GG25455TT G25770T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529769
 2020-08-21 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6762T T12503C C14408T C16887T A23403G G25455T G25770T C28333T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529770
 2020-08-21 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002775/2020
 ATTAAAGGTTT1- C241T C3037T T3306C C7834T T12503C C14408T A15831T C17822T A23403G G24834T G26538T C27145T GGG28881AAC C29721T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529771
 2020-08-21 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C4002T G4201T G7936T G10097A A11854G C12455T C13536T C14408T C18747T A23403G C23664T C23731T G27841T GGG28881AAC G29425T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529772
 2020-08-21 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002777/2020
 C241T C3037T C3743T C4002T G7936T G10097A A11854G C12455T C13536T C14408T C18747T A23403G C23664T C23731T G27841T GGG28881AAC G29425T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_529773
 2020-08-21 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C6762T T12503C C14408T C16887T A23403G G25455T G25770T C28333T GGG28881AAC C29721T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_529775
 2020-08-21 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C6762T T12503C C14408T A23403G G25770T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529783
 2020-08-21 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C6762T A9439G T12503C C14408T C16343T G16852T A23403G G25770T GGG28881AAC C29095T C29721T T29760C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_530165 MT997687
 2020-08-21 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1569/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T C22079A A23403G G25563T G25907T C27964T C28472T C28869T C29364T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_530255
 2020-08-21 2020-09-11
 Australia hCoV-19/Australia/QLD996/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G21666T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_530632
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CEA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A C4927T G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530633
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CC8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14074Y C14408T C15738T G17590K C18481T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530639
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96D053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2534K C3037T C14408T G19021R A23403G G25244T G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530641
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96CB08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530644
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96CA29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530645
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CC41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T C17999T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530646
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C92C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T C19854T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530654
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96D062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C9943T C13774T C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530656
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C86B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G G25269T C26801G G27613T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530659
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96C78C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27534C G28851T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530660
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CC23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530661
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T C16308T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530668
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CB53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530677
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CFFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T T10453C C11195T C14408T A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530680
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CB9F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T C16428T T19839C C21635T C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530682
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96C8E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T G22468R C23127T A23403G C25466A G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530683
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CAED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530693
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CE5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530694
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C84D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530698
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96CB26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5000T C9430T G10540T T11737C C12823T T14289A C14408T A16920C A23403G C27092T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530699
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CBEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530701
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C9C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530702
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C936T C1960T C3037T C5301T G11083T C13247T C14408T C14937T T18144C A23403G G25785T C26681T G28857T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530704
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3372R G4403R C4655Y T5507A C14408T C18129T C18788T G19648K A20268R T21158C A23403G C28854Y GGGG28881RRSK A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530705
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96DC8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T G13348T C14408T C16733T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530707
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96D017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G377T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530708
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96DD7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C11514T T14313C C14408T G15652T A23403G G23438T C25006T G27659T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530711
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CA74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T C28153Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530715
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CA92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530722
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96D2A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530725
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CAFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C9943T C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530731
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CA0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C9943T C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530732
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CE78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530736
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CE4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C9943T C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530741
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C9943T C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530743
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96DE0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530745
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CE87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530747
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CAB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T A6475C G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530749
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CADE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530759
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C9FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C9943T C13511T C14408T C15738T A18399G T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530760
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96CE2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530763
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CB80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G3250K G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530768
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96DDC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T C29420T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530770
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CBCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2421G C3037T G3242A A5546R G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530773
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CF93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G27271T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530775
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CB71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C9943T C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530783
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CA56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C10605T C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530785
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96CC9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G8120C C9943T C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530787
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96C9A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G5305T G8120C C9943T C14408T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530788
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C8F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530797
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-96D0DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530798
 2020-08-21 2020-09-11
 United Kingdom hCoV-19/England/QEUH-96C83E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A435G C1437T C3037T C14408T A23403G G27467T GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534257
 2020-08-21 2020-09-11
 Sweden hCoV-19/Sweden/20-52637/2020/P1
 C241T C3037T T3649G C14177T C14408T C16338T C18881T C21622T A23403G G25606T GGG28881AAC G29291T

EPI_ISL_534517
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CEC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T TT20957AA C21302T CG21304AA G22813T A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534524
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CEF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534526
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CF48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G C23520Y GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534527
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CF1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA C21622Y A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534529
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CD7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534531
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CCE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534539
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96DD89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534551
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G T27384C GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534559
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96C810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534564
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96C8A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G C27494Y GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534568
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D0AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534573
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CD8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G ACA12780- C13335T C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534576
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CD4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G189R C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534577
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CEB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3575A C4655T G5305A A5958G C14408T G19735T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534582
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CDF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2692R C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534584
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D28A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G9211A G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534587
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CE0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G ACA12780- C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534588
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96DDA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T C10889T G11132T A13810G C14408T G21255C C22227T A23403G C25355T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534589
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CCBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534590
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CDA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G ACA12780- C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534592
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96DDB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T G9314T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534594
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96DCF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T C5974T G6622C A8590C C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534599
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96DE1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G G9802T C14408T C21302T CG21304AA A23403G G25979K GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534601
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96DE2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T G22205C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534617
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96C77D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8296C C12076T C14408T C18877T G19846A C22227T G22332T A23403G G25563T G28690T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534621
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96C889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10252T C13536T C14408T T21154G G21795T A23403G C23731T C28292A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534629
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CD20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T G19735T C21302T CG21304AA A23403G C26895T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534633
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96CC05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T G19735T C21302T CG21304AA A23403G C25373T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534640
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D0BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534748
 2020-08-21 2020-09-14
 United Kingdom hCoV-19/England/LIVE-1D290B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8203G G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536633 MW035431
 2020-08-21 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C27213T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536637 MW035435
 2020-08-21 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1601T C3037T C14408T C18486T A20268G T22162C A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536643 MW035441
 2020-08-21 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14178T C14408T G19677T A23403G C25276T C28977T C29077T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536644 MW035442
 2020-08-21 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3096T A4267G C11200T C14408T C18747T A23403G C26882T G28300T G28883A A28998G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536650 MW035448
 2020-08-21 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C140T C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C G11083T C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536651 MW035449
 2020-08-21 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C27213T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536655 MW035453
 2020-08-21 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C27213T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539341 LR882374
 2020-08-21 2020-09-18
 Switzerland 260003
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G370K T445C A743R C3037T C6286T C13671Y C14408T C14805T G17278T AT20284TC G21255C G22035S C22227T A23403G C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539342 LR882380
 2020-08-21 2020-09-18
 Switzerland 260004
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C245T C313T C3037T C4878T C14408T C17634T A23403G G27561T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539343 LR882386
 2020-08-21 2020-09-18
 Switzerland 260005
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T7767C C8047T G12988T C14408T C14724Y G15598A C17104T G18028T G19398T A20268G C21676Y G21800T C22879A A23403G T24910C G25494T T26972C C27800M C27855M G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539344 LR882388
 2020-08-21 2020-09-18
 Switzerland 260006
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C788T C3037T T8614Y G10265A G11083T C14408T C15720T A15972G C19718T A23403G G26700T C27972T T28759Y GGG28881AAC G29348T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539345 LR882385
 2020-08-21 2020-09-18
 Switzerland 260007
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3112C T5327G G10265A C14408T C15720T A15972G C19718T C21575T A21592R G21770T A23403G G26700T G28487R T28759Y GGG28881AAC G29348T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539346 LR882383
 2020-08-21 2020-09-18
 Switzerland 260008
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1820A C3037T G3560R C3784T C5796T C9430T C10582T G12769T C12823T C14408T G16377T G19861K G22616T A23403G G23611T C25831T GGG28881AAC G29425T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539347 LR882387
 2020-08-21 2020-09-18
 Switzerland 260009
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C842T T1359C C3037T C7765T G9190T C10702T G11083T C11109T C14408T G15243K C17690T C18877T A23403G G25563T C25886T C27429T G28851C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539348 LR882381
 2020-08-21 2020-09-18
 Switzerland 260011
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G571A A1829R C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539349 LR882382
 2020-08-21 2020-09-18
 Switzerland 260013
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1288T G1577S C3037T G5230T A7066R C10747Y C14408T A23403G G25429T C25916Y G25996A C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539351
 2020-08-21 2020-09-18
 Switzerland hCoV-19/Switzerland/VD-ETHZ-260016_924_G10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C T471W T634W C3037T C6286T A10066M T10076W C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539613
 2020-08-21 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T G11761T C14408T C15324T C21855T A23403G A25505G G25906C G25996T G26143T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539614
 2020-08-21 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T G11761T C14408T C15324T C21855T A23403G A25505G G25906C G25996T G26143T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540061
 2020-08-21 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998A15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29402T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540379
 2020-08-21 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1132C C3037T G10265A G11083T C14408T C15720T A15972G G16912T C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540573
 2020-08-21 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T C3602T A4040G C6941T C14408T C15324T G18985T C19524T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540574
 2020-08-21 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T C3037T C3602T A4040G C6941T C14408T C15324T C19524T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540578
 2020-08-21 2020-09-21
 Belgium hCoV-19/Belgium/ULG-10411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T G11605T T13111C C14408T C15324T C21587A C21855T A23403G A25505G G25906C G25996T T28297C C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541714
 2020-08-21 2020-09-23
 India hCoV-19/India/MH-NIV-173797/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C14408T C20384T T20949C G22131A A23403G C23604A G28209C GGG28881AAC C29555T G29737T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_542041
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305740/2020
 ATTAAAGGTTT1- C241T C1059T C3037T A12820G C14408T C16762T A17637G C20762T A23403G G25563T C28887T C29370S

EPI_ISL_542042
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6391C A12820G C14408T C16762T A17637G G19684T C20762T A23403G G25563T C28887T C29370G C29870A

EPI_ISL_542043
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305742/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A12820G C14408T C16762T A17637G C20762T A23403G G25563T C28887T C29370S C29870A

EPI_ISL_542044
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A12820G C14408T C16762T A17637G C20762T A23403G G25563T G28404K C28887T C29370G C29870A

EPI_ISL_542045
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T A6391C A12820G C14408T C16762T A17637G G19684T C20762T A23403G G25563T C28887T C29370S C29870A

EPI_ISL_542046
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6391C A12820G C14408T C16762T A17637G G19684T C20762T A23403G G25563T C28887T C29370G C29870A

EPI_ISL_542047
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305747/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1059T C3037T A6391C A12820G C14408T C16762T A17637G G19684T C20762T A23403G G25563T C28887T C29370G C29870M

EPI_ISL_542048
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305749/2020
 ATT1- C241T C1059T C3037T A5021T A6391C A12820G C14408T C16762T A17637G G19684T C20762T A23403G C25516Y G25563T C28887T C29370S

EPI_ISL_542049
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305750/2020
 ATTAAA1- C241T C1059T C3037T A12820G C14408T C16762T A17637G C20762T A23403G G25563T C28887T C29370S C29870A

EPI_ISL_542050
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C676T C1059T C3037T A3536G A12820G C14408T C16762T A17637G C20762T A23403G G25563T C28887T C29370S

EPI_ISL_542051
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305762/2020
 ATTA1- C241T C1059T C3037T A5021T A6391C A12820G C14408T C16762T A17637G G19684T C20762T A23403G G25563T C28887T C29370S

EPI_ISL_542052
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305763/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T A6391C A12820G C14408T C16762T A17637G G19684T C20762T A23403G G25563T C28887T C29370S C29870A

EPI_ISL_542053
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305764/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T A6391C A12820G C14408T C16762T A17637G G19684T C20762T A23403G G25563T C28887T C29370S

EPI_ISL_542054
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A6391C A12820G C14408T C16762T A17637G G19684T C20762T A23403G G25563T C28887T C29370G C29870A

EPI_ISL_542055
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305799/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T A5021T A6391C A12820G C14408T C16762T A17637G G19684T C20762T A23403G G25563T C28887T C29370S

EPI_ISL_542056
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305802/2020
 ATTAAAGG1- C241T C1059T C3037T A5021T A6391C A12820G C14408T C16762T C17502T A17637G G19684T C20762T G22021T A23403G G25563T C28887T C29370S

EPI_ISL_542057
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305804/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T A5021T A6391C A12820G C14408T C16762T A17637G G19684T C20762T A23403G G25563T C28887T C29370S TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_542058
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305805/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A5021T A6391C A12820G C14408T C16762T A17637G G19684T C20762T A23403G G25563T C28887T C29370S

EPI_ISL_542059
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305813/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A12820G C14408T C16762T A17637G C20762T A23403G G25563T C28887T C29370S AAA29901-

EPI_ISL_542060
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305819/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T A5021T A6391C A12820G C14408T C16762T A17637G G19684T C20762T A23403G G25563T C28887T C29370S TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_542061
 2020-08-21 2020-09-23
 United States hCoV-19/USA/NMDOH-2020305829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A5021T A6391C A12820G C14408T C16762T A17637G G19684T C20762T A23403G G25563T C28887T C29370G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_547725
 2020-08-21 2020-09-24
 United States hCoV-19/USA/WI-GMF-16473/2020
 AT1- C140T C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C G11083T C14408T C16017T A21137G A23403G G25963A G26199T C28977T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548602
 2020-08-21 2020-09-26
 United States hCoV-19/USA/CA-CZB-4049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACTAATTACTGTCGTTGACAGGACACGAGTAACTCGTCTATCTTCTGCAGGCTGCTTACGGTTTCGTCCGTGTTGCAGCCGATCATCAGCACATCTAGGTTTCGTCCG1- C313T C3037T C5979T C14408T A23403G T27645A G27666A GGG28881AAC G29648T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_551588
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-995650/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1859T C2939T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551637
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-993DD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C16877T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552445
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-9751FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552452
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974D70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29648T G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552460
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974D43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21099T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552462
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T G16912T C18877T T19383C C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552465
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-9752DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552467
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-97545C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1829C C3037T C14408T C16915T C16946T C17762Y C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552470
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-97553B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T G5504A C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27301G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552471
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974D34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2841T C3037T C4002T C10039T G10097A C12534T C13536T C14408T C17766T C21597T C21707T G21724A A23403G G23593T C23731T C25493T A26864T GGG28881AAC G28908T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552472
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975C18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T C19032T A20268G TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552480
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-9752E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T A13810G C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552496
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-974B2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552499
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552500
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-9754A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T G12514T C14408T C18877T C22444T A23403G G25563T C26735T G26814T C28854T G29422T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552502
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-97535F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G8612T G14202T C14408T C17304T G18078A G19542T C19718T C22388T A23403G A25020G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552503
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974B67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552509
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974C91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C15720T A15972G G16912T C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552510
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974D07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G1659K C3037T C5654T C13721T C14408T C19554T C22993T A23403G GGG28881AAC G29449T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552511
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974D61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C2070T C3037T C6286T C8841T C14408T G21255C C21575T C22227T A23403G C24130Y C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552517
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974CBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3903T T7767C C8047T G12988T C14408T G15598A C17104T G18028T C19884T A20268G TACATG21765- C22879A A23403G T24910C T26972C C27393T C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552528
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974CDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C673T C794T C1601T C3037T C3330T A13768G C14408T C15699T C15720T C16915T C17762T A23403G C25521T A26702T C28087T A28381C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552529
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975C45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552535
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974D8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4255T C4965T A8072G C14408T A16011G A21213G T22334A A23403G A25759G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552538
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C11514T C14408T G19824T G21255C C22227T G22346T C22377T A23403G C26801G C28846T C28932T G29645T G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552542
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974C73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21099T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552544
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-97537D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1829C C3037T C14408T C16915T C16946T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552545
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975577/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T C22388T A23403G C24844A C26464T C26942T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552549
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974B3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G1738T C3037T C6286T C14408T G21255C G21316T C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552551
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975AC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C6196Y C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T T26561C GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552557
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-97529E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552558
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-97528F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552561
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-97551D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7869T A12075G C14408T C16393T C18570T C18877T A21137G G22343C A23403G G25563T C26735T C28866T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552581
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974AD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552582
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-97554A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1313G C3037T C3602T C6941T T14332A C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T G29513T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552584
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T G22104T A23403G A25505G G25906C G25996T C26333T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552589
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974BA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552594
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975BDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6361T C7296T C14408T C18885T A23403G G27430T C28153T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552599
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-9751A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G376T T469C C3037T T7767C T7984C C8047T T11459G C14408T C16658T C17104T G18214A C18796T A20268G C22879A A23403G G28851T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552606
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975A96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G7936K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552611
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C1473Y C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T T28756C GGG28881AAC G29395T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552612
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-9752CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552613
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1829C C3037T C14408T C16915T C16946T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552616
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-97547A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9130T C14408T A19283C C20436T A23403G T27319C G28487A C28868T GGG28881AAC A29342G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552621
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-97546B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C3037T G3994T C10440T G10634A C10889T C14408T G21204T A23403G G26428T GGG28881AAC G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552625
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974AA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T G22104T A23403G A25505G G25906C G25996T C26333T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552637
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975BFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552638
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7869T A12075G C14408T C16393T C18570T C18877T C19961T A21137G G22343C A23403G G25563T C25692T C26735T C28866T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552640
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-9754F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T G23222C A23403G T24088C G25617T A26760T C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552643
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-974B76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15951T G17019K G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552651
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552652
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975B93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11514T C13168T C14408T C18877T C22444T A23403G G24764T G25563T C26735T C27059T G27806T C28087T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552662
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-9752AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552667
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975AE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T T26561C GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552676
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975225/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26681Y C26735T T26876C G28851T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552708
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975AA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T C22388T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552710
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-9752F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552715
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-975C54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552718
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-976039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552753
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-976118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C8139T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552756
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-976743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552763
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-976752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G19729R G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552769
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-97685F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C398T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552781
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-97678F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T C3267T G6352T C6445T C10868T T14313C C14408T G15652T A23403G G23438T C25006T G28221T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552788
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-97694D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C25350A C26801G C28706T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552790
 2020-08-21 2020-09-28
 United Kingdom hCoV-19/England/MILK-976770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560793
 2020-08-21 2020-09-29
 United States hCoV-19/USA/MN-MDH-1706/2020
 ATT1- C241T G626A C1059T A2491G C3037T C3411T C5512T T6394C C8683T C10319T C14408T C20938A A23403G G25563T C27964T C28887T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_562633
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15952Y C16222T G16647T A17337G C18555T A21137R C22858T G22992A G23401A A23403G C24034T -25700CCC GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562685
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C3656T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G C28377T GGG28881AAC GAATGGCTG28899- TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562688
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A4870G T7540C C14408T G16647T C18555T G22992A G23401A A23403G G28080A GGG28881AAC AGTGTAC29756- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562708
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C1780T C3037T C5365T T7540C C14408T C14786T G16647T C18555T G22992A G23401A A23403G AAG25164- GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_562743
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_562744
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562745
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G6943A T7540C C14408T G16647T C18555T C21575T G22992A G23401A A23403G GGG28881AAC GC29773- GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_562746
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_562748
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_562779
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC10060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562781
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC10065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G A17615R C18555T T19497C G22992A G23401A A23403G C23655T C25889Y GGG28881AAC G29742C AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562783
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC10067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G265T A1163T C3037T T7540C C9438T C14408T G16647T C18555T C22227T G22992A G23401A A23403G GGG28881AAC C29347T G29692T G29777T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563311
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC11257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563350
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC11387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T A3417M T7540C C10931M C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29347T G29692T G29777T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563351
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC11388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T T22360W G22992A G23401A A23403G C23655T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563353
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC11392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C8917T C14408T G16647T C18555T G22992A G23401A A23403G G27506A GGG28881AAC G29692T G29777T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_563355
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC11396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A C28256T G28632T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563368
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC11423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C5392T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563801
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC13660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4158Y C5365T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563838
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC13788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T G7328T T7540C C14408T G16647T C18555T T21369C G22992A G23401A A23403G T28009C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563854
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC13851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C T8431C C9474T C14408T G16647T C18555T G22992A G23401A A23403G C23635T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563876
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC13904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C8917T C14408T G16647T C18555T G22992A G23401A A23403G G27506A GGG28881AAC G29692T G29777T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563952
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC14063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T A1163T C3037T C4406T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565377
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C1812T C3037T T7540C C9442T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G28936A GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565384
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565407
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G6320T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565410
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565412
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C16887Y C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565413
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T C254T A1163T C3037T T7540C C11109T C14358Y C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565419
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565425
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1063T A1163T C1722T C3037T G3114T T7540C C14408T C14838T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565445
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A5163G G5305T T7540C G11083T C14408T T15102G G15594T G16647T C18555T C21767T G22992A G23401A A23403G C27503Y GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565446
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T A1163T C3037T A5163G G5305T T7540C G11083T C14408T T15102G G15594T G16647T C18555T C21767T G22992A G23401A A23403G C27503T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565447
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T A5163G G5305T T7540C C14408T T15102G G15594T G16647T C18555T C21767T G22992A G23401A A23403G C27503Y GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565450
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565471
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565472
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565474
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9260/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C10422T T14295Y C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565475
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565477
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565528
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C5144T T7540C G11335T C14408T G16647T C18555T T21369C G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565530
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T A19740R C21978Y G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565589
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC C29743T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565613
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C1593Y C3037T C3738T C4832T T7540C C14408T G16647T C18555T C19170T G21800T G22992A G23401A A23403G C25703T C26571T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565617
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9595/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C8389T A10155G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565633
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9638/2020
 ATTAAAGGTTTATACCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565634
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC G28899C CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565635
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C12754T C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565638
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T C7471T T7540C C14408T G16647T A17337G G17721T C18555T G22992A C23191T G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565639
 2020-08-21 2020-09-30
 Australia hCoV-19/Australia/VIC9652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_526678 MT956802
 2020-08-22 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1192/2020
 A1- C241T C1059T C1385T G1738T C3037T G3242A T4976C A6925G C7728T C8917T C11916T C14408T A23403G G25563T C25844T C28087T G28774T A29056G C29836T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_526679 MT956803
 2020-08-22 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1193/2020
 ATTAAAGGTTT1- C241T C2416T C3037T G6894T C14408T C16616T A23403G G25563T C26885T C27603T C28887T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526680 MT956804
 2020-08-22 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1194/2020
 ATTA1- C21T C241T C1059T C3037T C3369T C5583T G8017T C14408T C16260T A23403G G25563T G28134A C28290T C28821A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526681 MT956805
 2020-08-22 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1195/2020
 ATT1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_526682 MT956806
 2020-08-22 2020-09-01
 United States SARS-CoV-2/human/USA/FL-BPHL-1196/2020
 A1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_528386
 2020-08-22 2020-09-05
 Egypt hCoV-19/Egypt/C-VSVRI-SERVAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

EPI_ISL_529684
 2020-08-22 2020-09-10
 United Kingdom hCoV-19/Scotland/CVR3970/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8296C C12076T C14408T C18877T G19846A G20060T C22227T G22332T A23403G G25563T G28690T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529685
 2020-08-22 2020-09-10
 United Kingdom hCoV-19/Scotland/CVR3971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530155 MT997237
 2020-08-22 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T C3487T C11308T C14408T T15264C C16332T C19170T A23403G C25791T G26230T C28854T C29614T CCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29836-

EPI_ISL_530163 MT997685
 2020-08-22 2020-09-10
 United States SARS-CoV-2/humans/USA/MN-MDH-1567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G3216T G8083A T8953C C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_530164 MT997686
 2020-08-22 2020-09-10
 United States SARS-CoV-2/human/USA/MN-MDH-1568/2020
 ATT1- C241T C1059T C3037T C10319T C14408T G18255T A18424G T19516C C21304T C22264T A23403G C23453T G25019T G25563T G25907T C27964T C28472T C28869T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530258
 2020-08-22 2020-09-11
 Australia hCoV-19/Australia/QLD1000/2020/P1
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G21666T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_530754
 2020-08-22 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-96D1F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534212
 2020-08-22 2020-09-11
 Latvia hCoV-19/Latvia/123/2020/P1
 C241T T445C C3037T C6286T C10207T C14408T G20237T G21255C C22227T A23403G G23611T C25703T C26801G C27944T C28932T G29645T

EPI_ISL_534222
 2020-08-22 2020-09-11
 Latvia hCoV-19/Latvia/132/2020/P1
 C241T T2537G C3037T C6573T G12191T C14408T C14937T T16479C A23403G GGG28881AAC

EPI_ISL_534632
 2020-08-22 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-96D23F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536632 MW035430
 2020-08-22 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T833C C1059T C3037T A3490G C4534T C14408T T14867C G17388T A23403G G25266T G25563T C25904T C26527T C27964T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536645 MW035443
 2020-08-22 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1147A C3037T A4937G A9328T C14408T T15276C T19839C A23403G G28307A GGG28881AAC G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536653 MW035451
 2020-08-22 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4878T G8083A C10319T C14408T C14805T A18424G G19732T C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539356 LR882394
 2020-08-22 2020-09-18
 Switzerland 260022
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G204T C241T T445C C3037T C6286T C7169Y C7203Y G7238R T7266Y T7274K C7286Y T7305K C14408T G21255C T21539W C21575Y CT21595YY C21658M C22227T A23403G C26801G C27944T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539357 LR882390
 2020-08-22 2020-09-18
 Switzerland 260023
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G91K C241T G411R T445Y T1359Y C1513Y C1549Y C3037T C4829Y C5295Y C6031Y C6286Y G6641R C7716Y T9098Y G9526K G9807K C14408T C16260Y T16353W C18400Y T20452Y G21255C T21574Y C22227Y C22377Y A23403G G25769R C26801G C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539358
 2020-08-22 2020-09-18
 Switzerland hCoV-19/Switzerland/BL-ETHZ-260024_927_D02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T568Y A610M A1236R C3037T C3448M C3738T G4476K G5253K C5537S T6136Y G6755R A6995R G9086S G9130T G9526K G12292R G12331R G12347R T12349Y T14133K C14408T T14544W G14548R G15965K C16111T A16842R G17887R G18148R A18454W A19888R G22154K C23034Y A23403G C25731Y T27319Y G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539359 LR882397
 2020-08-22 2020-09-18
 Switzerland 260025
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G204T C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539360 LR882400
 2020-08-22 2020-09-18
 Switzerland 260026
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671Y C14408T C14805T G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539361 LR882395
 2020-08-22 2020-09-18
 Switzerland 260027
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T A14916R G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539362 LR882389
 2020-08-22 2020-09-18
 Switzerland 260028
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G625K C3037T G10265A G11083T C14408T C15720T A15972G C19718T A23403G G26700T G28357T T28759Y GGG28881AAC G29348T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539364
 2020-08-22 2020-09-18
 Switzerland hCoV-19/Switzerland/BL-ETHZ-260031_929_E03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1263Y TG1360KK C1527Y G1820A C3037T C9430T C10582T C10977T G12514T C12823Y C14408T C15738T C21575Y T21653Y A23403G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866M

EPI_ISL_539365 LR882392
 2020-08-22 2020-09-18
 Switzerland 260032
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C245T C313T C2143Y C3037T G11083T C11747T C14408T C17634T G20011T C20628T A23403G G23611T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539366
 2020-08-22 2020-09-18
 Switzerland hCoV-19/Switzerland/BE-ETHZ-260034_930_H06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G204T C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539367 LR882391
 2020-08-22 2020-09-18
 Switzerland 260035
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346K C22377T A23403G C26801G C28310Y C28706T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539372 LR882404
 2020-08-22 2020-09-18
 Switzerland 260042
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5453R G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T A22394R G22992A A23403G G24872T G25563T C25710T C26735T T26876C G27014T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539900
 2020-08-22 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C190T C241T C3037T A3786G C5055T G11851T C14408T C14786T G19348T A23403G G24812T C26895T G28817T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539984
 2020-08-22 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T G19086K C21855T A23403G G24770A A25505G G25906C G25996T C28473T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540002
 2020-08-22 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540034
 2020-08-22 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998A24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T A10720G C14408T G21255C C21614T C21714T C22227T A23403G G25445T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540036
 2020-08-22 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9987F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T G12322T C14408T C16308T C18698T G21255C C22227T A23403G T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540042
 2020-08-22 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540069
 2020-08-22 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99864E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C1919A C3037T C9286T C10789T C12473T C14408T A19020C G22203T A23403G A27994T C28866T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540112
 2020-08-22 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5183Y C5301T C5907T C13247T C14408T C14937T C18032T T18144C A23403G C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540119
 2020-08-22 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541789
 2020-08-22 2020-09-23
 United Kingdom hCoV-19/England/QEUH-999003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G C25466A G25563T C26735T T26876C G27260A C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541803
 2020-08-22 2020-09-23
 United Kingdom hCoV-19/England/QEUH-99908B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T A23403G C25207T C25665T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541842
 2020-08-22 2020-09-23
 United Kingdom hCoV-19/England/QEUH-999294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T T3925C G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547727
 2020-08-22 2020-09-24
 United States hCoV-19/USA/WI-GMF-16632/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T G2089A C3037T C14408T C15324T C16260T C21575T C21622T C22329Y A23403G G24173T G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547729
 2020-08-22 2020-09-24
 United States hCoV-19/USA/WI-GMF-16793/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T T1592C C2416T C3037T C6113T C14408T T16530A G21372T A23403G G25563T C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548024
 2020-08-22 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_548599
 2020-08-22 2020-09-26
 United States hCoV-19/USA/CA-CZB-4102/2020
 ATTAAA1- C241T C1594T C3037T C5672T C14408T C19884Y C20099T A20268G C20759T A23403G T24076C T25159C C25611T C28698Y C28854T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_551595
 2020-08-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-99583C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551606
 2020-08-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-993E87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T G22205C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551615
 2020-08-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-993E3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551639
 2020-08-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-993E0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551672
 2020-08-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-993E4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T G6337T C7303T C7564T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T C16293T C16877T C17528M G21123T G21800T A23403G G25563T T27622C G27632T C27804T G27906K C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551677
 2020-08-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-993ED2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T C6196Y C6336T G9526T C11497T G13993T C14408T G15766T C16658T A16889G G17019T C18877T G22992A A23403G G25563T C25710T G26416K G26529T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551684
 2020-08-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-993E5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551685
 2020-08-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-993E96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T G9086A C9430T C9561T C10582T C12823T C14408T C15951T C17138T A23403G G25489T C26455T G28476T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551689
 2020-08-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-9956AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551704
 2020-08-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-993DE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551713
 2020-08-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-993EA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T C3037T C5184A C10252T C13887T C14408T C16733T C18687T C23248T A23403G G25595T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551715
 2020-08-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-9956C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552484
 2020-08-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-974D9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T G13920A C14408T C14786T C17898T G21123T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552487
 2020-08-22 2020-09-28
 United Kingdom hCoV-19/England/MILK-974DAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T C22388T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562637
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC10023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T G21372K C22480T G22992A G23401A A23403G T23695C GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_562643
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC11436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C23634T T23695C G25244T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562766
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC10024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A T23032G G23401A A23403G T28426Y GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_562775
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC10043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562778
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC10055/2020
 ATTAAAGGTTT1- C241T C920T A1163T G2258R C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_562816
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC10177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C506T A1163T C3037T C7600T G7798T C14408T C17172Y A23403G T23548C C26447Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563352
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC11391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563359
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC11403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5392T T7540C C9344T T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563372
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC11441/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C2227T C3037T T7540C A13488G C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G C24897T C25624T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563378
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC11454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563381
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC11459/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C3738T C4832T T7540C C9491T T14136C C14408T G16647T C18555T C19170T G21800T G22992A G23401A A23403G C26571T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563963
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC14086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C3738T C4832T T7540C C9491T C14408T G16647T C18555T C19170T G21800T G22992A G23401A A23403G C26571T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565405
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C T9013C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565406
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C T7931K T9013C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565408
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22000Y G22992A G23401A A23403G T28098G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565417
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3164A T7540C C14408T G16647T A17337G C17339T C18555T G22992A G23401A A23403G C23655T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565436
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T8248C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565437
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T8248C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565438
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T8248C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565442
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565443
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3164A T7540C C14408T G16647T A17337G C17339T C18555T G22992A G23401A A23403G C23655T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_565448
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T C14768T G16647T C18555T C18657T A21137G G22992A G23401A A23403G T23677A C23895T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565610
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T C24023Y T27785C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565611
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565612
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3860T T7540C C14408T C15352T G16647T C18555T C19862T C21812T G22992A G23401A A23403G G24992C A26162G G26550R GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565656
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13019T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565661
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C T8641W T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565662
 2020-08-22 2020-09-30
 Australia hCoV-19/Australia/VIC9700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T G7328T T7540C C14408T A16172G G16647T C18555T T21369C G22992A G23401A A23403G T28009C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568331
 2020-08-22 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998A7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T G19735T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568393
 2020-08-22 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-997D4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C10833T G12514A T13606C C14408T A20268G C22858T A23403G C25886T C28833T A29720G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT947165
 2020-08-22 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947166
 2020-08-22 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947167
 2020-08-22 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947168
 2020-08-22 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947169
 2020-08-22 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947170
 2020-08-22 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947171
 2020-08-22 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947172
 2020-08-22 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947173
 2020-08-22 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947174
 2020-08-22 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT947175
 2020-08-22 2020-09-01
 Egypt SARS-CoV-2/human/EGY/EGY-040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT974069
 2020-08-22 2020-09-05
 Egypt SARS-CoV-2/human/EGY/Egy-SERVAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

MT974071
 2020-08-22 2020-09-05
 Egypt SARS-CoV-2/human/EGY/Egy-SERVAC/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C3037T C14408T C18877T A23403G G25563T TCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29834-

MT994901
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994902
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994903
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994904
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994905
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994906
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994907
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994908
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994909
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994910
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994911
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994912
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994913
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994914
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994915
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994916
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994917
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994918
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994919
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994920
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994921
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994922
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994923
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994924
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994925
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994926
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994927
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994928
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994929
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994930
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994931
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994932
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994933
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994934
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994935
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994936
 2020-08-22 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_527363
 2020-08-23 2020-09-03
 Singapore hCoV-19/Singapore/854/2020
 ATTAAAGGTTTATACCT1- C222T C241T C1218T C3037T C8917T G9092T C14408T G22708T A23403G C27110T T27384C GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_529629
 2020-08-23 2020-09-10
 United Kingdom hCoV-19/England/BIRM-6292F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T G3410T C7029T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529630
 2020-08-23 2020-09-10
 United Kingdom hCoV-19/England/BIRM-6293E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529693
 2020-08-23 2020-09-10
 United Kingdom hCoV-19/Scotland/EDB7366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T C5974T G6622C A8590C C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529780
 2020-08-23 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002786/2020
 ATTAAAGG1- C241T C3037T C6762T T12503C C14408T C16887T A23403G G25455T G25770T C28333T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529784
 2020-08-23 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002790/2020
 ATTAAAGGTT1- C241T C3037T G11447A G11761T C14408T G15285T C21306T C22675T A23403G G28077T G28541T GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_529785
 2020-08-23 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002791/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6762T T12503C C14408T C16887T A23403G G25455T G25770T C28333T GGG28881AAC C29721T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_529786
 2020-08-23 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T T12503C C14408T C16887T A23403G G25455T G25770T GGG28881AAC C29721T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_529789
 2020-08-23 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1063T C2094T T2432C C3037T C14408T G16853T G21830T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530156 MT997227
 2020-08-23 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2799/2020
 ATTAAAGGTTTATAC1- C241T C3037T C3487T C11308T C14408T T15264C C16332T C19170T A23403G C25791T G26230T C28854T C29614T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_530157 MT997224
 2020-08-23 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2800/2020
 ATTAAAGGTTTAT1- A231C C241T G2626T C3037T C3045T C4898T C6408T C14262T C14408T C18486T A20268G G20477T T22162C A23403G C28854T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_536631 MW035429
 2020-08-23 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C1427T C3037T G3871T T3931C C6285T C14408T C19524T C20429T A23403G G25538T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536636 MW035434
 2020-08-23 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T C23185T A23403G G23900C A24253T G24724A C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537204
 2020-08-23 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997E65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3871T G4908A G10265A G11083T C14408T C15720T A15972G G16912T C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537205
 2020-08-23 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997D68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2918T C3037T C3117Y G6052A C10319T T10906C C14408T G19872T A22974G A23403G G25563T G25654T G25855T C27964T G29254T G29474T G29692T G29764T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539368 LR882407
 2020-08-23 2020-09-18
 Switzerland 260038
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G G25489K C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539369 LR882408
 2020-08-23 2020-09-18
 Switzerland 260039
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A30W C241T C3037T C4543T G5629K A5949R G9526T C11497T G13993T C14408T G15766T A16889G G17019T G17572T C18877T T21075W G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539370 LR882402
 2020-08-23 2020-09-18
 Switzerland 260040
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539383 LR882421
 2020-08-23 2020-09-18
 Switzerland 260057
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G571A C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A C29724T G29757T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539386 LR882409
 2020-08-23 2020-09-18
 Switzerland 260060
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G520T C3037T G11842A A12759G C13665Y C14408T G18292T A20268G T22213C C22329Y A23403G G23755T G27987T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539389
 2020-08-23 2020-09-18
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-260064_943_G06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C4815T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_540055
 2020-08-23 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540102
 2020-08-23 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C11173Y G14202T C14408T A19182W G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540136
 2020-08-23 2020-09-21
 United Kingdom hCoV-19/Wales/QEUH-998866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C829Y C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541788
 2020-08-23 2020-09-23
 United Kingdom hCoV-19/England/QEUH-99930A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C11620T C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541808
 2020-08-23 2020-09-23
 United Kingdom hCoV-19/England/QEUH-999391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T A26760T C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541839
 2020-08-23 2020-09-23
 United Kingdom hCoV-19/England/QEUH-99913D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G19999T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G28980K G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541846
 2020-08-23 2020-09-23
 United Kingdom hCoV-19/England/QEUH-99907C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547728
 2020-08-23 2020-09-24
 United States hCoV-19/USA/MN-GMF-16735/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T T1592C C3037T G4836T A8845R A10323G G11083T C14408T G16813K C17747T A20886R G21372T G21452A A23403G G25563T C26091Y G28842T C29171Y AATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29805-

EPI_ISL_548021
 2020-08-23 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548022
 2020-08-23 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548023
 2020-08-23 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_550538
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G3230T C3787T C14408T G17964T C18252T G19539T G21225T G22225K G23401T A23403G C26224T G28396A C28849T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550640
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550694
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C64T C241T C1594T C3037T T4640C C5512T C6195T A6625G C9246T C11109T C12415T G14335T C14408T C17750T G17790T T19159G A23403G G25305A G25563T G25565A T27342C G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550789
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T A12103G C14408T A20742C A23403G GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550974
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551591
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-9957C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A81C C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551592
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-995AAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G T27671C G28371T C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551594
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-99584B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15181A G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551598
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-9957A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C995T C1594T C3037T T4640C C5512T C6195T A6625G C9246T G11083T C11109T C12415T C14408T G14575T C17750T G17790T T19159G A23403G G24933T G25563T G25565A T27342C G28077T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551617
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-9959A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551621
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-995984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551623
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-995975/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- C3037T G10265A C14408T C15720T A15972G C19718T A23403G A24803G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551626
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-99568D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551629
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-9958B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T TT26485CA C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551632
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-9959FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T C6629Y G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T G25726T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551636
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-9958C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551640
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-995887/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23365G A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551644
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-995A36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T G6341A ATT12627- C14120T C14408T C15540T G17019T C19884T A23403G C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551658
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-9957B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551671
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-995939/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551680
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-995993/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551688
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-9958F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C G21538T C21614T C22227T A23403G C24372T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551690
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-995948/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551709
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-9956E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C8139T C14408T G21255C C22227T G22346T C22377T A23403G G25523T C26801G C28754T G28845K C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551720
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-995A27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T G6341A ATT12627- C14120T C14408T C15540T G17019T C19884T A23403G C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551734
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/MILK-9955EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559759
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/QEUH-997CB6/2020
 C241T T445C C1513T C3037T C4582T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T T29867W ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_559762
 2020-08-23 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99948F/2020
 C241T T445C C1513T C3037T C6286T C14408T G19824T G21255C C22227T G22346T C22377T A23403G C26801G C28846T C28932T G29645T G29747T

EPI_ISL_560800
 2020-08-23 2020-09-29
 United States hCoV-19/USA/MN-MDH-1713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T C22079A C22523M A23403G G25563T G25907T C27964T C28472T C28869T C29364T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_562651
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC13760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3656T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G C28377T GGG28881AAC GAATGGCTG28899- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562681
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C3656T T7540C C14408T G15594T G16647T C17518Y C18555T G22992A G23401A A23403G C28377T GGG28881AAC GAATGGCTG28899- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562682
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C3656T G5633R T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G C28377T GGG28881AAC GAATGGCTG28899- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562683
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C3656T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G C28377T GGG28881AAC GAATGGCTG28899- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562684
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C3656T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G C28377T GGG28881AAC GAATGGCTG28899- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562690
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G CAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAGA27689- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562772
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC10035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_563348
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC11378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T C913Y A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563349
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC11379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T G13813K C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563374
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC11445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G C28256T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563798
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC13655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T C16391T G16647T C18555T G22992A G23401A A23403G C25714T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563862
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC13878/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T T898Y A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565441
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24748T A25718G C28725Y GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565468
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G10618R C14408T G16647T C18555T C18652Y G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_565470
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21622T G22992A G23401A A23403G GGG28881AAC C29523T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565614
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26227A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565615
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9586/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T A3372G T7540C C14408T G16647T C18555T T19500C G22992A G23401A A23403G A25137C T26773C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565616
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5144T G7328T T7540C C14408T A16172G G16647T C18555T T21369C G22992A G23401A A23403G T28009C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565658
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T G7328T T7540C C14408T A16172G G16647T C18555T T21369C G22992A G23401A A23403G C26110Y T28009C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565659
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C13019T C14408T G16647T C18555T G22992A G23401A A23403G C23533T G28580T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565660
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9697/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C7811T C14408T G15594T G16647T G18002A C18555T C21855T G22992A G23401A A23403G C28093T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565689
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3860T T7540C C14408T C15352T G16647T C18555T C19862T C20132Y C21812T G22992A G23401A A23403G G24992C A26162G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565690
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A6693W T7540C G11083K C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565693
 2020-08-23 2020-09-30
 Australia hCoV-19/Australia/VIC9752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26029M GGG28881AAC G29513T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_517542
 2020-08-24 2020-08-24
 United Kingdom hCoV-19/England/PORT-2D3C1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1457T A2480G C2558T G11083T C14805T C21575T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_517611
 2020-08-24 2020-08-24
 Germany hCoV-19/Germany/DOB-PE-S4/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C14408T C21781T A23403G G25563T C29415T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_527179
 2020-08-24 2020-09-03
 Australia hCoV-19/Australia/NSW2716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8950T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24764T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_528683
 2020-08-24 2020-09-08
 India hCoV-19/India/DL-IGIB-77797/2020
 ATTAAA1- C162T C241T T1945G T1947C C3037T CC4900TA C5893T T8022K C8344T A9419G A11595G C12880T C14408T A15772T C16887T G17944T C18877T A22005G C22444T A23403G AG24389MS GT25555KK G25563T C26735T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_529253
 2020-08-24 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169E37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T C27972T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_529686
 2020-08-24 2020-09-10
 United Kingdom hCoV-19/Scotland/CVR3974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529695
 2020-08-24 2020-09-10
 United Kingdom hCoV-19/Scotland/EDB7374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C10755T C11455T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G26840T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529778
 2020-08-24 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002784/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C6762T A9439G C10350T T12503C C14408T A23403G G25770T GGG28881AAC C29721T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529779
 2020-08-24 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002785/2020
 ATTA1- C241T C3037T A4197C T4450C C12439T C14408T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529782
 2020-08-24 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C3037T C4002T G10097A C13536T C14408T C18747T A23403G C23731T G27415A GGG28881AAC G29425T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_529787
 2020-08-24 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T G370T C3037T G11447A C14408T C18131T C22675T A23403G C27389T G28077T GGG28881AAC G29212T C29311T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529788
 2020-08-24 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002794/2020
 ATTAAAGGT1- C241T C3037T C6026T C6594T C8668T C14408T C21057T A23403G C23625T G28690T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_529790
 2020-08-24 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002796/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1889T C3037T C7712T T12503C C14408T A16674G A23403G G25770T GGG28881AAC C29721T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_529791
 2020-08-24 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002797/2020
 ATTAAAGGTTT1- C241T C3037T G4255A C4406T G11447A C14408T A22330G C22675T A23403G A25505T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_529792
 2020-08-24 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002798/2020
 ATTAAAGGTTT1- C241T T2378A C3037T C8357T G11447A C14408T C15720T C22675T T22939C A23403G G28077T GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529794
 2020-08-24 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002800/2020
 ATTAAAGGTTTATACC1- C241T C3037T G3562T C3811T G11447A C14408T C15352T G19999T C21306T C22675T A23403G G28077T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_529797
 2020-08-24 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C3903T G11893T C14408T C16111T G18816T A19476G T22967C A23403G C25614T GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529798
 2020-08-24 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002804/2020
 ATT1- C241T C3037T A5809T G11447A C14408T C22675T A23403G G28077T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_529799
 2020-08-24 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002805/2020
 C241T C1218T C3037T C14408T A18082G G22094A A23403G C25889T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_530158 MT997240
 2020-08-24 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2801/2020
 ATTAAAGGTTTATACCTT1- C241T C3037T C14408T G15380T C16092T C16338T C18486T C20032T A20268G T22162C A23403G C28854T CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_534210
 2020-08-24 2020-09-11
 Latvia hCoV-19/Latvia/121/2020/P1
 C241T T445C C3037T C6286T C10207T C14408T G20237T G21255C C22227T A23403G G23611T C25703T C26801G C27944T C28932T G29645T

EPI_ISL_534211
 2020-08-24 2020-09-11
 Latvia hCoV-19/Latvia/122/2020/P1
 C241T T445C C3037T C6286T C10207T C14408T G20237T G21255C C22227T A23403G G23611T C25703T C26801G C27944T C28932T G29645T G29706T

EPI_ISL_534213
 2020-08-24 2020-09-11
 Latvia hCoV-19/Latvia/124/2020/P1
 C241T T445C C3037T C6286T C10207T C14408T G20237T G21255C C22227T A23403G G23611T C25703T C26801G C27944T C28932T G29645T

EPI_ISL_534221
 2020-08-24 2020-09-11
 Latvia hCoV-19/Latvia/131/2020/P1
 C241T T772C A2869G C3037T G6352T C6445T C10868T T14313C C14408T G15652T T22861C T22963C A23403G G23438T C25006T T27919C GGG28881AAC C29095T

EPI_ISL_535089
 2020-08-24 2020-09-14
 United Kingdom hCoV-19/England/SHEF-CF79F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C335T C3037T A9339G C14408T C17766T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536635 MW035433
 2020-08-24 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A G8117T C10319T C10790T G13201T C14408T C14805T A16748G A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536639 MW035437
 2020-08-24 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A A9085G C10319T C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536642 MW035440
 2020-08-24 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T A696C C3037T G3518A G3871T T3931C C6906T A8390G C14408T C18115T C19402T A23403G G24124T G24926T C25153T G25305T C25714T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536647 MW035445
 2020-08-24 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C1427T C3037T G3871T T3931C C6285T C14408T G19101T C19524T C20429T A23403G G25538T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536648 MW035446
 2020-08-24 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C G11083T C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536649 MW035447
 2020-08-24 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C19979A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537149
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997DC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537151
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997D86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C C25572T G25617T A26760T C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537153
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997DE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1681K C1707Y C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25409S G25538K G25563T A26319G G28476S C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537157
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997E92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537159
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997D3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C2710T C3037T T7767C C8047T A10978T C14408T C15026T C17104T A20268G T20799C C22879A A23403G C23625T G25489K A27298T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537160
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997E47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537163
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997EB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T G19816T A23403G G25471T GGG28881AAC G29757K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537166
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997E38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T G3431T C6120T C6286T C14408T G20477T T20661C G21255C C22227T A23403G G25987T C26801G C28932T C29366T C29386T G29645T TGAACAA29765- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537169
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997D2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C2710T C3037T T7767C C8047T A10978T C14408T C15026T C17104T A20268G T20799C C22879A A23403G C23625T G25489T A27298T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537170
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997E83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT C21552T A23403G C23730T G25563T A26319G C27643T C28854T G29044A C29274T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537172
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997E1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T G12917A C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537185
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997E0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1113T C3037T C4543T G5629T C9286T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27401C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537193
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997E74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C401Y C3037T G3994T C10440T G10634A C10889T C14408T G21204T A23403G G26428T GGG28881AAC G28907T A29237G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537195
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997DA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T A23403G G25471T G28817T GGG28881AAC G29090T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537200
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997E56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9430Y C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28253Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537202
 2020-08-24 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997D59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539373 LR882401
 2020-08-24 2020-09-18
 Switzerland 260043
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539375 LR882403
 2020-08-24 2020-09-18
 Switzerland 260045
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T C13255Y G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25088K G25563T C25710T C26735T T26876C G28975C G29399A G29427A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539376
 2020-08-24 2020-09-18
 Switzerland hCoV-19/Switzerland/BL-ETHZ-260048_937_B05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C842T A1168R T1359C C3037T C7765T G9190T C10702T G11083T C11109T C14408T G15243K C17690Y C18877T A23403G G25563T C25886T C27429T G28851C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539377 LR882405
 2020-08-24 2020-09-18
 Switzerland 260049
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T2989K C3037T A3061W C3738T T6964K G9130T C14408T C16111T C22286Y A23403G G25500A T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539378 LR882412
 2020-08-24 2020-09-18
 Switzerland 260051
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C465Y C1387Y GT1413KY G2273R T2290Y C2416T C3037T G3065K G3134R T3144K C3276Y A5510R A5563R T7236W G8371T G8459K C9430T G10046K C10626Y G11851K C12513Y G13350K G13571K T13855Y C14408T C14931Y A15477T A16210W G17551K G17648K C18395T C18461S AGA20622TTT G21463K G22454R T22963Y C22987T A23403G G23608K C23730T G23755S G25563T G25785K A26319G C26464Y C27247Y C28854T A28898W G28985K G29044A G29097K A29544M C29708Y AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_539379 LR882414
 2020-08-24 2020-09-18
 Switzerland 260052
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G411R G425R A642M C3037T C4586Y G9130T C14408T G18756T G21538T A23403G T27319C G28487A C28868T GGG28881AAC G29239T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539382 LR882413
 2020-08-24 2020-09-18
 Switzerland 260055
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671Y C14408T C14805T C16222T G17278T C17766Y AT20284TC G21255C C22227T A23403G G26199K C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539387
 2020-08-24 2020-09-18
 Switzerland hCoV-19/Switzerland/BE-ETHZ-260061_943_D04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671Y C14408T C14805T G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539392 LR882420
 2020-08-24 2020-09-18
 Switzerland 260069
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539393 LR882424
 2020-08-24 2020-09-18
 Switzerland 260070
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K A5949R G9526T C11497T T12184Y G13993T C14408T G15766T A16889G G17019T G17572T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29861K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539402 LR882415
 2020-08-24 2020-09-18
 Switzerland 260080
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T T5333Y A5383R G5629T C8334Y G9526T C11497T G13993T C14408T C14925Y A15668R G15766T A16889G G17019T C18877T C19862Y G22992A A23403G G24098K G25563T C25710T C26735T T26876C G28086K G28975C G29399A G29427A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539403 LR882427
 2020-08-24 2020-09-18
 Switzerland 260081
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671Y C14408T C14805T C16049T G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539412 LR882448
 2020-08-24 2020-09-18
 Switzerland 260091
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4510T G11842A A12759G C14408T G18292T A20268G A23403G C24099T C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539417 LR882429
 2020-08-24 2020-09-18
 Switzerland 260097
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539419 LR882434
 2020-08-24 2020-09-18
 Switzerland 260099
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K A5949R G9526T C11497T G13993T C14408T G15766T A16889G G17019T G17572T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539902
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T T3925Y G4006T C5170T C6286T T7984Y G11132T C14408T G21255C C21736Y C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539903
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9987B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C12439T C14408T C15045T G21255C C21614T C22227T A23403G C26801G C27944T C28776T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539904
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9985E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C241T C3037T C6726T C14408T C21597T A22456G A23403G T23860C C25504A G25552T GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539905
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-9988DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539908
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99882A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1681T C1707T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25538T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539910
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99867B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539913
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-998532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539915
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-99857E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539916
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9984DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C7119T T12965Y C14408T C18252T G21850T A23403G G28321T G28396A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539926
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998E64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G G25720T C26078T C26527T G28083T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539932
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9985D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C1912T C2508T C3037T G5210A C14408T C15324T G16543T C17470T C21191T A23148G A23403G T27125C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539942
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9988C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4406T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- G22113K C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539944
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-998936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539945
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99880C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T G22205C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539947
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9984AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539951
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539954
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9983ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T G12191T C14408T C15324T A16044T C21855T G22813T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539955
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-998A06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T C16887T C17243Y C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539958
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9982FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C15720T A15972G G16912T C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539965
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99868A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539985
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99871E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G T23722Y G25720T C26078T C26527T G28083T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539986
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998C5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539992
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2167A C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28253Y C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540001
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7303Y C10525Y C14408T G21255C C21614T C22227T G22289T A22503W A23403G C26801G G27478T C27944T G28368T C28706Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540004
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9984CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C11747T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540014
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9989AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29706T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540016
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9987D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C1912T C2508T C3037T G5210A C14408T C15324T G16543T C17470T C21191T A23148G A23403G T27125C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540017
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T G19816T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540027
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99872D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T G19816K A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540031
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/Wales/QEUH-998A42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T A5689R G5950T G10097A C13536T C14408T C18377T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540033
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998453/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T G19816T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540035
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-998523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540038
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540041
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T T15648Y C21637T A23403G A28169G A28552T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540045
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C503T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T G26720T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540048
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9986C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2162A C3037T C4002T G5950T G10097A C12053T A12083G C13536T C14408T C18839T G19723T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540065
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99870F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T T10177C C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540066
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9987A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540072
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-998A51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540076
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9985C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T C14802A C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540077
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998875/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540078
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99856F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T C22388T A23403G C24844A C26464T C26942T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540083
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540084
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9989DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T T21570G C21575T G22256T A23403G T25473C C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540085
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2675T C3037T T5507A C7299T G11083T C14408T A20268G C21614T A23403G G26653T C28603T C28854T C29167T G29648T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540088
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-998602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C584T C1912T C3037T G4105T G4180T A8667G T10453C C11195T C14408T T18260C A23403G A25235T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540090
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T T4924C C5175T C6401T C14408T A23403G C25096T G28326T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540093
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C3037T G3994T C10440T G10634A C10889T C14408T G21204T A23403G G26428T GGG28881AAC G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540096
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99863F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C123T C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540101
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9989FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3634T C5822T C8668T T10885C C11919T T12494C C14408T C15324T A15668C C16616T C18129T C22006T A23403G C25693T T25902C C27874T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540104
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G G25720T C26078T C26527T G28083T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540108
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-998787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C16985T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540113
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99866C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T A10323G G12067T C14408T G17014T C17528T A17538G C20703T A23403G G24236T C25549T C25603T G26452T T26494G C28000T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540116
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998A60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1113T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27401C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540117
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-9989EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T C16887T C17746T G19962T C21575T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540130
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-998AAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1678C C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC C29197T G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540138
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-998927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540360
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F05B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T C15960T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540402
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F12B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11083T G11851T G13762A C14408T C14786T A23403G G24812T C26895T G28028T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540405
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540692
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/NORW-EEA55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T505C G872T C3037T C3261T T7783C A8159G C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T

EPI_ISL_540693
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/NORW-EEA82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T G23126R A23403G C24588T G25552T C27945T G28221T GGG28881AAC C29750T

EPI_ISL_540695
 2020-08-24 2020-09-21
 United Kingdom hCoV-19/England/NORW-EEC7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T

EPI_ISL_541716
 2020-08-24 2020-09-23
 India hCoV-19/India/MH-NIV-176041/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G204T C241T C313T C3037T C5700A C10319T C14408T T22242C A23403G T24055C T25887C C27247T C28651T GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541717
 2020-08-24 2020-09-23
 India hCoV-19/India/MH-NIV-176352/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A C9967T C14408T C20574T A23403G G23593T T23952G G26217T C28153T GGG28881AAC G28899C A29491G G29690T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541756
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/BHRT-24B4177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C1919A C3037T C9286T C10789T C12473T C14408T G22203T A23403G A27994T C28866T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541784
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-9992A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313Y C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541785
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-998F70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C66A C241T C313T C3037T C5301T G8796T G11516A C14408T C17285T G19872T A20294G A23403G G25855C G25947A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541786
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-999425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T C8832T C9611T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541787
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/Wales/QEUH-998E82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G688T C3037T T3049C C14408T G21624T A23403G C26013G C26135T G27877T A28523G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541790
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-9993A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2992C C3037T G11447A G11761T C14408T C21648T A23403G G25302A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541791
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-999030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C3736T C7528T C9391T C11900Y C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541793
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-9993BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G22346T A23403G G26062T C26801G G27437A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541796
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-998FBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1915T C3037T C3817T C4002T G10097A C10252T C13536T C14408T T21154G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541797
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-999012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C11747T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541800
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-998FAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541801
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-999452/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1245A C1884T C8782T G11230T G18803T A23977G C26681T T28144C G28167A C28810T G28878A C29675T G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541802
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/Scotland/QEUH-99909A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T C16887T C17746T G19962T C21575T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541809
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/Scotland/QEUH-99916A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541810
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-998FF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T G25523A C26895T GGG28881AAC T29010C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541811
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-998F25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A C11124T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25611T C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541812
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-998EBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C4455T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541813
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-999276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541814
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-9990E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541815
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-999407/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T G19816T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541816
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-998E91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C679A C2416T C3037T G8371T C9430T C14408T C14932Y A15477T C18395T AGA20622TTT A23403G C23730T C25413T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541818
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-998FE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541819
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-998F07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C11758T C12484T C14408T C18877T C22444T A23403G G25563T C26735T C28854T A29084G C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541820
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-9990F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T G3452A C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27012T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541821
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-998FDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A23403G C24787T T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541823
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-999319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T C12439T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541824
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-9993EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T C15045T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541825
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-998F9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541826
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-998EFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A22155G A23403G C23731T C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541828
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-999188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2453T C3037T C14408T C19881A G22918T A23403G G25440T C25916T A27253T G28396A GGG28881AAC G29227A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541829
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-999258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T T25210C C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541830
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-999373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T G21295T C21855T A23403G G25314K A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541831
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-9992EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5434C C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541832
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-998F8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C11074T G11083T C14408T C15720T A15972G G16912T C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541833
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/Wales/QEUH-998F61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541834
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-9990D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2992C C3037T G11447A G11761T C14408T C21648T A23403G G25302A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541835
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-9993CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3593T T6890C G8371T C9430T C14408T A15477T C18395T AGA20622TTT G20991T A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541836
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-99906D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C5724T G8612T G14202T C14408T C17304T G18078A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541837
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-998F52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541838
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/Scotland/QEUH-9990B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541840
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-9992B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T A3626G G4232T C7528T C11471T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541841
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-999100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222Y C241T T445Y C3037T C4543Y G5629K C6286Y G9526K C11497Y G13993K C14408T G15766K A16889R G17019K C18877Y T20661C G21255S C22227Y G22992R A23403G G25563K C25710Y C26735Y C26801S T26876Y G28346K C28932Y G28975S C29366Y C29386Y G29399R G29645K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541844
 2020-08-24 2020-09-23
 United Kingdom hCoV-19/England/QEUH-998EDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T A4469G C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T T29479A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541939
 2020-08-24 2020-09-23
 Spain hCoV-19/Spain/MD-IBV-99007169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_547584
 2020-08-24 2020-09-24
 India hCoV-19/India/UT-IMT-BY60/2020
 ATTAAAGGTTTATA1- G1470A C3037T C3602T A10552G C14408T C15738T C18877T C22444T A23403G G25563T C26735T G28337T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_547730
 2020-08-24 2020-09-24
 United States hCoV-19/USA/WI-GMF-16843/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T G1157A C3037T G8083A C10319T C14408T C14805T A18424G T19215C G19816T A20481G C21304T A23403G G25563T G25907T G25971T C27964T C28472Y C28869T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547731
 2020-08-24 2020-09-24
 United States hCoV-19/USA/WI-GMF-16858/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T T1592C C2416T C3037T C6113T C14408T T16530A C21005Y G21372T A23403G G25563T C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547732
 2020-08-24 2020-09-24
 United States hCoV-19/USA/WI-GMF-16891/2020
 ATTAAAGGTTTATACCTTC1- G210T C241T C1059T C3037T C3773T C7086T C9611T T14191C C14408T C16260T C19687T A23403G G23900C A24253T G25563T A28792T C28821A C29245A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547733
 2020-08-24 2020-09-24
 United States hCoV-19/USA/MN-GMF-16946/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C4686T G8314A A10323G G11083T C14408T T15276A A23403G G25563T G28842T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547734
 2020-08-24 2020-09-24
 United States hCoV-19/USA/WI-GMF-17018/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A696C C3037T G3871T T3931C C4226T C5672T C6990T A7837C C14408T C17586T G19677T A23403G G25947T C28977T G29744T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548030
 2020-08-24 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_549039
 2020-08-24 2020-09-28
 Norway hCoV-19/Norway/3212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T C6445T C10868T C14408T G15652T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549040
 2020-08-24 2020-09-28
 Norway hCoV-19/Norway/3213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C2710T C3037T T7767C C8047T A10978T C14408T C15026T C17104T C17977T A20268G T20799C C22879A A23403G C23625T G29179A C29253T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549041
 2020-08-24 2020-09-28
 Norway hCoV-19/Norway/3214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G376T C3037T C3261T A4961C G11893T G13564T C14408T C18267T C18877T C22444T A23403G G24586T G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550723
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C3F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551616
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-99424E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C G21523R C22227T A23403G C26801G C27944T C28256Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551618
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-99426C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C G21523R C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551625
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-99425D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551646
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-9941D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A382G C3037T T7048C C7732T C8480T C14408T A23403G G25563T G28337K C28849T C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551697
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-995614/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551699
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-9941AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A G11083T C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551970
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-993713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C11620T C13536T C14408T G19732T C23191Y A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552196
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-995052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552208
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-99531D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C10543T C14408T C18252T A23403G C24378T G28396A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552215
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-99533B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8802T GATATGGTT11267- T12166G C14408T C17410T T17886C C20402T A23403G GGG28881AAC C29545A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552218
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-9952C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T931A T1947C C3037T A5958G C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552223
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-99526B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T C17999T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29692T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552230
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-99534A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4105T C6286T C13115T C13671T C14408T C14805T G17278T AT20284TC G21255C C22227T A23403G A25636W C26801G A27755T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552235
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-995386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552237
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-99517D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552251
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-9950F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T G8179K C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G C23422M A23631T G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552254
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-995395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T G3452A C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27012T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552260
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-9953C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9484C C11195T C14408T C16887T C20759T A23403G G28378T G28875A GGG28881AAC G29140T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552277
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-9953A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9130T A9484C C11195T C14408T C16887T C20759T A23403G G28378T G28875A GGG28881AAC G29140T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552278
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9950DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29477T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552283
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-99518C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T G6404T C6720Y G10265A -11075TTT G11083T C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29348T G29402T A29526W CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552285
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-9947E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1267T C3037T C6286T C9745T C14408T G21099T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552313
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-9952A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552321
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-993B53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C7173Y G8003T C14408T T16926C G21255C C22227T A23403G C26801G G27467C C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552324
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-995359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552340
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-995201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T G6344T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552343
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-995043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G22346T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552345
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-995289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T C18377T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552373
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-9949C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552384
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-994985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552393
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-995140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552396
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-9953E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T G5210A C14408T C15324T C17470T C21191T A23148G A23403G T27125C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552407
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-99532C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552408
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99530E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552410
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-994976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C G529T C3037T C5170T C6286T G11132T C12043Y C14408T A14578G G21255C C22227T A23403G G25049T C26801G C28232T G28350A C28932T G29162K G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552411
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/MILK-9952F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552417
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9950AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552441
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9950E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29477T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559763
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9994AD/2020
 C346T G1397A C4784T C7869T G8258A G11083T G14400T T17139A G20274T T21087C A23403G C24223T G25726T A26059G T28297C T28688C C28932T G29742T

EPI_ISL_559764
 2020-08-24 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9994CB/2020
 C241T T1947C C3037T C7528T C14408T C18877T G21867T C22444T A23403G G25563T C26735T C28854T C29555T AA29902-

EPI_ISL_560794
 2020-08-24 2020-09-29
 United States hCoV-19/USA/MN-MDH-1707/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C10319T C14408T G18255T A18424G T19516C CG21304AA C22264T A23403G C23453T G25019T G25563T G25907T C27964T C28472T C28869T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560798
 2020-08-24 2020-09-29
 United States hCoV-19/USA/MN-MDH-1711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G626A C1059T A2491G C3037T C3411T C5512T T6394C C8683T C10319T C14408T C20938A A23403G G25563T C27964T C28887T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_562636
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C A7795G C14408T C16222T G16647T A17337G C18555T C22858T G22992A G23401A A23403G C24034T -25700CCC GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562648
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC13653/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3656T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G C28377T GGG28881AAC GAATGGCTG28899- CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_562649
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC13666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3656T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G C24157T G26951S C28377T GGG28881AAC GAATGGCTG28899- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562751
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_562752
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_562753
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C9778T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562764
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC10019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562768
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC10026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T C7471T T7540C C14408T G16647T A17337G G17721T C18555T G22992A C23191T G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_562771
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC10032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T A19699R G22992A G23401A A23403G C24351T T25111A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562773
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC10037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22227T G22992A G23401A A23403G GGG28881AAC C29347T G29692T G29777T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_562774
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC10041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T25421C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562929
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC10482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C1426Y C3037T T7540C C9996T C14408T G16647T C18555T G22992A G23401A A23403G C25308Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562961
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC10565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C13019T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563336
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC11339/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18814T G22992A G23401A A23403G A28816R GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563338
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC11342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18814T T22479W G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563339
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC11343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22082Y G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563340
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC11344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C9996Y C12513Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563377
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC11451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C C8327T A9744G C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563800
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC13658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C2488T C3037T T7540C C14408T G16647T A18298G C18555T C22480T G22992A G23401A A23403G C24026T T27957C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563855
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC13852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_563858
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC13867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C6033T T7540C C14408T C14980T G16647T C18555T C18568T G22992A G23401A A23403G C23457A C24026T GGG28881AAC C29774T AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_563953
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC14068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C8208Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29284T G29692T G29777T ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_565500
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565501
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565502
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T20391G G22992A G23401A A23403G GGG28881AAC C29347T G29692T G29777T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565504
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9319/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C6336T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G C27513T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565643
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565652
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C T13216C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_565653
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G C24381Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565654
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9688/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7420T T7540C C14408T G16647T C18555T G21898T G22520A G22992A G23401A A23403G C27513T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565655
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3860T T7540C C14408T C15352T G16647T C17850Y C18555T C21812T G22992A G23401A A23403G G24992C A26162G C27644T A27950R GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565657
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3860T T7540C C14408T C15352T G16647T C18555T C19862T C21812T G22992A G23401A A23403G G24992C A26162G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565670
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C2488T C3037T T7540C G8131K C13019Y C14408T G16647T C18555T C22480T G22992A G23401A A23403G C26895Y T27957C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565674
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9724/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3345T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565675
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9725/2020
 ATTAAAGGTTTATACCTTC1- C241T A1163T C3037T G3164A T7540C C14408T G16647T A17337G C17339T C18555T G22992A G23401A A23403G C23655T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565677
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3860T T7540C C8152T A13974G C14408T C15352T G16647T C18555T C21812T G22992A G23401A A23403G G24992C A26162G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565678
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C1473T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G C26213T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_565691
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565692
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565742
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A3372G T7540C C14408T C14919S G15907K G16647T C18555T T19500C G22992A G23401A A23403G A25137C T26773C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565771
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C7735Y C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565773
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C12116T T13532Y C14408T G16647T C18555T C21516T G22363K G22992A G23401A A23403G A27024C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565774
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24822T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565823
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T C5392T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565824
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9986/2020
 ATTAAAGGTTTA1- C66T C241T A1163T C3037T C4582T T7540C C11109T C14408T C15810T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565825
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565827
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T C14931Y G16647T A17337G C18555T G22992A G23401A A23403G C23655T C25509Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565828
 2020-08-24 2020-09-30
 Australia hCoV-19/Australia/VIC9997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G G25166C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_566034
 2020-08-24 2020-09-30
 United States hCoV-19/USA/MI-MDHHS-SC21984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3773T C4455Y C7086T C8097Y T14191C C14408T C16260T C16985Y A23403G G23900C A24253T G25563T C28821A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_568352
 2020-08-24 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998A8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T G4357T C4655T G5305A A5958G C14408T TT20957AA C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568366
 2020-08-24 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9990C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C11956T C14408T A15477T C18395T AGA20622TTT A23403G C23730T T25202K G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568367
 2020-08-24 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-999267/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T G22484T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568445
 2020-08-24 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F2FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T C22458Y A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_518118 MT973169
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6093/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T G3564T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24933T T27957C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518284 MT971927
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_518382 MT971568
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518558 MT971683
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3768T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518591 MT971715
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3065A T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26526T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_518599 MT971723
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_518612 MT971736
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5818/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_518615 MT971739
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_518616 MT971740
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C17678T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518617 MT971741
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5823/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22444T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518618 MT971742
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_518620 MT971744
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5826/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22498T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518625 MT971749
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518702 MT971660
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518709 MT971667
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4999T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_518724 MT971712
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5945/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G14241T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518734 MT971767
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5959/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_518737 MT971770
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5962/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C A12250G C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_518738 MT971771
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518739 MT971772
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5964/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_518740 MT971773
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518741 MT971774
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518742 MT971775
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518743 MT971776
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T490C A1163T C3037T C7600T G7798T C11931A C14408T A23403G T23548C G28307A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_518744 MT971777
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T490C A1163T C3037T C7600T G7798T C11931A C14408T A23403G T23548C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_518903 MT970819
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518905 MT970821
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G24301A GGG28881AAC

EPI_ISL_518932 MT970784
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_518934 MT970788
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C12784T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518935 MT970789
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A489G A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_518936 MT970792
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TAGGGGAACTTCTCCTGC28879-

EPI_ISL_518937 MT970794
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4526/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_518938 MT970796
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519047 MT972835
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4658/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519053 MT970827
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4665/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G27632T GGG28881AAC

EPI_ISL_519058 MT970834
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519103 MT970903
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4715/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519167 MT970999
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T C19151T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519172 MT971008
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519224 MT970997
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519229 MT971006
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519237 MT970831
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4853/2020
 ATTAAAGGT1- T10G C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T C20762T G22992A G23401A A23403G C23457A GGG28881AAC

EPI_ISL_519331 MT972908
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_519332 MT972909
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4966/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23063T A23403G C26984T T28196C GGG28881AAC

EPI_ISL_519447 MT970380
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519544 MT970537
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519545 MT970538
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519546 MT970539
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C103T C241T A1163T C3037T T7540C G11083T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519560 MT970559
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519570 MT970574
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519606 MT970625
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519768 MT970782
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4472/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_519769 MT970783
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29692T G29777T

EPI_ISL_519772 MT970790
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519774 MT970793
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519775 MT970795
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519776 MT970797
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519777 MT970798
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4481/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519778 MT970799
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- A30M C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519779 MT970800
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22992A G23401A A23403G T26491C GGG28881AAC

EPI_ISL_519796 MT970552
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC4992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T18843C C19217T G22992A G23401A A23403G GGG28881AAC G29348T

EPI_ISL_519809 MT971034
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28961T

EPI_ISL_519814 MT971039
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T4402A T7540C C14408T G16647T C18555T C19151T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519912 MT971141
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519959 MT971200
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5194/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519960 MT971205
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC

EPI_ISL_519961 MT971207
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T A2410G C3037T T7540C C14408T G16647T C18555T C22323T G22927T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519962 MT971211
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A18141G C18555T G22992A G23401A A23403G C23895T GGG28881AAC

EPI_ISL_519981 MT971255
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22825C G22992A G23401A A23403G G26526T GGG28881AAC

EPI_ISL_519982 MT971256
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_519991 MT971294
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520006 MT971365
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29218T

EPI_ISL_520032 MT971199
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5267/2020
 ATTAAAG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520033 MT971201
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3885A T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520034 MT971202
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T G2801T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A24432G A26162G GGG28881AAC G29579A

EPI_ISL_520035 MT971203
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520036 MT971204
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520037 MT971206
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520038 MT971208
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520039 MT971209
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5274/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520040 MT971210
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15352T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520056 MT971244
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520060 MT971249
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520065 MT971254
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520071 MT971265
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520076 MT971270
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C28657T GGG28881AAC

EPI_ISL_520078 MT971272
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T27785C GGG28881AAC

EPI_ISL_520084 MT971279
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5321/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_520088 MT971286
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC5325/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC

EPI_ISL_520308 MT972683
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3559/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29546T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520314 MT972689
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3565/2020
 ATTAAAGGT1- C241T A1163T C2065T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520330 MT972705
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6033T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23457A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520562 MT970160
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520622 MT970194
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A26162G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_520766 MT969828
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T A1163T C3037T T7540C C12784T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520772 MT969693
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_520789 MT969757
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3082/2020
 ATTAAAGGTTTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_520790 MT969758
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_521087 MT969357
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3409/2020
 AT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_521088 MT969358
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC3411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_521245 MT972056
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521246 MT972057
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C17288T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521249 MT972060
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T C15714T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC

EPI_ISL_521250 MT972061
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521265 MT972077
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C25889T GGG28881AAC

EPI_ISL_521409 MT973095
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC6652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G G28703C GGG28881AAC

EPI_ISL_521584 MT969667
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C7600T G7798T C14408T A23403G T23548C T27484C GGG28881AAC

EPI_ISL_521817 MT969808
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T21369A G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521821 MT969812
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521936 MT969387
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2190/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521937 MT969388
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2191/2020
 ATT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_521938 MT969389
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2192/2020
 ATTAAAGGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C19217T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522096 MT972226
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_522194 MT969490
 2020-08-25 2020-08-25
 Australia SARS-CoV-2/human/AUS/VIC2496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_527180
 2020-08-25 2020-09-03
 Australia hCoV-19/Australia/NSW2717/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8950T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24764T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_527379
 2020-08-25 2020-09-03
 Singapore hCoV-19/Singapore/870/2020
 ATTAAAGGTTTATAC1- A3951G C6310A C6312A G9500A G11083T C13730T T16542C G17427T C18894T C19524T C22716Y A23592R A23914R C23929T C28311T G29616T AAAAAAAAAAAA29892-

EPI_ISL_529634
 2020-08-25 2020-09-10
 United Kingdom hCoV-19/England/BIRM-62998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C13968T C14408T C18877T C22444T A23403G G25563T C26735T C26985T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529687
 2020-08-25 2020-09-10
 United Kingdom hCoV-19/Scotland/CVR3976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529706
 2020-08-25 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169E64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29870M

EPI_ISL_529711
 2020-08-25 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169F07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G25567A C28849G GGG28881AAC

EPI_ISL_529714
 2020-08-25 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169F61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C313T C3037T G11083T C14322T C14408T C18252T G20433T A23403G G28396A GGG28881AAC

EPI_ISL_529716
 2020-08-25 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169F8F/2020
 ATTAAAGGTTTA1- G204T C241T T445C C3037T C6286T C14408T C15480T G18984K G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_529800
 2020-08-25 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4197C T4450C C12439T C14408T A23403G GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_529801
 2020-08-25 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002807/2020
 AT1- C241T C3037T G12014T G12256T T12503C C14408T C16490T T22822C A23403G G25770T GGG28881AAC C29721T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_529802
 2020-08-25 2020-09-10
 South Africa hCoV-19/South Africa/KRISP-K002808/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C1288T C3037T C3811T C4002T C5784T C9746T G10097A C13536T C14408T C18747T A23403G C23731T G24293A T27384C GGG28881AAC G29425T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_530159 MT997231
 2020-08-25 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C3602T C4752T G11083T C12924T C14408T C16762T A23403G G23948C G25563T C26858T G27074T C27737T G29254T AGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29780-

EPI_ISL_530259
 2020-08-25 2020-09-11
 Australia hCoV-19/Australia/QLD1001/2020/P1
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G21666T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_534214
 2020-08-25 2020-09-11
 Latvia hCoV-19/Latvia/125/2020/P1
 C241T T445C C3037T C6286T C10207T C14408T G20237T G21255C C22227T A23403G G23611T C25703T C26801G C27944T C28932T G29645T

EPI_ISL_534215
 2020-08-25 2020-09-11
 Latvia hCoV-19/Latvia/126/2020/P1
 C241T T445C C3037T C6286T C10207T C14408T G20237T G21255C C22227T A23403G G23611T C25703T C26801G C27944T C28932T G29645T

EPI_ISL_534216
 2020-08-25 2020-09-11
 Latvia hCoV-19/Latvia/127/2020/P1
 C241T T445C C3037T C6286T C10207T C14408T G20237T G21255C C22227T A23403G G23611T C25703T C26801G C27944T C28932T G29645T

EPI_ISL_534218
 2020-08-25 2020-09-11
 Latvia hCoV-19/Latvia/128/2020/P1
 C241T T445C C3037T C6286T C10207T C14408T G20237T G21255C C22227T A23403G G23611T C25703T C26801G C27944T C28932T G29645T

EPI_ISL_534219
 2020-08-25 2020-09-11
 Latvia hCoV-19/Latvia/129/2020/P1
 C241T T445C C3037T C6286T C10207T C14408T G20237T G21255C C22227T A23403G G23611T C25703T C26801G C27944T C28932T C29199T G29645T

EPI_ISL_534220
 2020-08-25 2020-09-11
 Latvia hCoV-19/Latvia/130/2020/P1
 C241T T445C C3037T C6286T C10207T C14408T G20237T G21255C C22227T A23403G G23611T C25703T C26801G C27944T C28932T G29645T

EPI_ISL_535071
 2020-08-25 2020-09-14
 United Kingdom hCoV-19/England/SHEF-CAC3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A18602G C21637T C22550T A23403G C27494T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535201
 2020-08-25 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A0F4/2020
 ATTAAAGGTT1- C241T C884T C3037T C4551T C8836T C10189T C10775T C14408T T16276C C17766T C18877T C22444T A23403G C24138T G25563T C26735T C26822T C28163T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_536634 MW035432
 2020-08-25 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3811T G8083A A9085G C10319T C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536638 MW035436
 2020-08-25 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C G11083T C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536640 MW035438
 2020-08-25 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C475T C1059T C3037T C5986T C9491T C12754T C14408T G15100T C15154T C20970T A23403G G25563T A28389T C28657T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536641 MW035439
 2020-08-25 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1269/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1942T C3037T G8083A A9085G C10319T C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536646 MW035444
 2020-08-25 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C3037T A5706G C5884T C12008T C14408T C14583T A23403G C26060T C28256A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536652 MW035450
 2020-08-25 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5986T C9246T C14408T T15060G A23403G G25563T C26625T C28367T C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536654 MW035452
 2020-08-25 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T C11674T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539397 LR882416
 2020-08-25 2020-09-18
 Switzerland 260075
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T2149Y C3037T C4002Y T7767C C8047Y G12988K C13536Y C14408T G15598R C17104Y G18028K G19732K A20268G C22550Y C22879M A23403G T24910Y G25494K A25589W T26972C C27800M G29706K G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539398 LR882422
 2020-08-25 2020-09-18
 Switzerland 260076
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1113T C3037T C4543T G5629K G9526T C11497T G12385K G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25249K G25563T C25710T C26735T T26876C G28975C G29399A G29402T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539399
 2020-08-25 2020-09-18
 Switzerland hCoV-19/Switzerland/VD-ETHZ-260077_948_G02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629T A5949R G9526T C11497T G13993T C14408T G15766T A16889G G17019T G17572T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539400 LR882423
 2020-08-25 2020-09-18
 Switzerland 260078
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G411R T633Y C3037T C4543T G5629T C7793M G9526T G10981R C11497T G13993T C14408T G15766T T16404Y A16889G G17019T A18196R C18877T G21255S G22992A A23403G G25563T C25710Y C26735T T26876C C27434T C28932Y G28975S G29399R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539401 LR882418
 2020-08-25 2020-09-18
 Switzerland 260079
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C842T T1359C C3037T C7765T G9190T C10702T G11083T C11109T C14408T G15243K C17690Y C18877T A23403G G25563T C25886T C27429T G28851C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539405
 2020-08-25 2020-09-18
 Switzerland hCoV-19/Switzerland/BE-ETHZ-260084_952_H05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671Y C14408T C14805T G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T G28703C C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539410 LR882447
 2020-08-25 2020-09-18
 Switzerland 260089
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5950K G6080A T8041C G10265A C11758T C14408T A15972G C19718T A23403G G23593T T28759C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539411
 2020-08-25 2020-09-18
 Switzerland hCoV-19/Switzerland/VD-ETHZ-260090_955_F03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T C11919Y G13993T C14408T G15766T A16889G G17019T G18225T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539435
 2020-08-25 2020-09-18
 Switzerland hCoV-19/Switzerland/BE-ETHZ-260130_970_C02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T A3120W T3144K C6286T C13671Y C14408T C14805T G17278T AT20284TC G21255C A22182T C22227T A23403G C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539436 LR882467
 2020-08-25 2020-09-18
 Switzerland 260131
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2995K C3037T G3047K A3557M G3562R G3564K A3588M T3610Y A3722W C4543T T5393Y G5629T A6946R T6969Y G9526T C11497T G13993T C14408T G15766T A16889G G17019T T17675Y C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A C29679Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539437 LR882464
 2020-08-25 2020-09-18
 Switzerland 260132
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T T3144K C6286T G12031R C14408T G20398A T20661C G21255C G21468T C22227T A23403G G25816C C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539439 LR882462
 2020-08-25 2020-09-18
 Switzerland 260143
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G787T C2925Y T3022W C3037T A3111R A7025W G9130T C14408T G18756T G21538T A23403G T27319C G28487A C28868T GGG28881AAC G29239T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539441 LR882451
 2020-08-25 2020-09-18
 Switzerland 260145
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629T T7035W G9526T C11173T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539443
 2020-08-25 2020-09-18
 Switzerland hCoV-19/Switzerland/BE-ETHZ-260147_978_H04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C3044M T3127Y G3135K G3716S C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G G28451K C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539593
 2020-08-25 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4927T G5276T T7648C C9693T G13812T C14408T C18744T G19684T T19839C A23403G C23422T G27561T GGG28881AAC G29405C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539901
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9983DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7037T G9130T C14408T T20973A A23403G T27319C G28487A C28868T GGG28881AAC G28899R G29212T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539909
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9982E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539922
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99035E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1973T C3037T C3261T C5621T G9479T T11098Y C14408T A20288C C23043Y A23403G G28178T G28476T GGG28881AAC G29755A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539941
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FD90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C6633T G8371T C9430T C10408T C14408T A15477T AGA20622TTT A23403G C23730T G25563T C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539950
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FE60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C5817T T7767C C8047T A10724G A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539960
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-9982D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G6755K G8371T C11074Y G11083T C14408T C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539967
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99830B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G20274T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539983
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-990154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1319A C3037T C3634T C3884A C5301T C14408T C15324T G17721T G18898T C21575T T22246C A23403G C26894T C28923T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539987
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T C15237T A23403G G24812T C26464T C26895T GGG28881AAC G28907T C29197T G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539999
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99831A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540023
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FB78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540064
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9901BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C311T G1319A C3037T C3634T C3884A C5301T C14408T C15324T G17721T G18898T C21575T T22246C A23403G C26894T C28923T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540121
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-990136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540342
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F1A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G20274T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540344
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C A22206T C22227T A23403G G25049T G25062T C26801G C28657T C28932T G28960T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540346
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F2CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540348
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F0B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540349
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F3BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C5184T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540352
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F1EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C G22249A A23403G GGG28881AAC G29422T C29451T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540358
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EF5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T C29743T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540363
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F4E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540364
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T G10976R C14408T C18877T C20628T C22444T A23403G G23628T G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540366
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F3AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T G8371T G11083T C14408T C16887T C17746T G19962T C22477T A23403G G25266T G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540370
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T C14408T A20268G A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540378
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F4C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C14408T A20268G A23403G C25731T G27463C C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540385
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EE43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2453T C3037T C14408T G22918T A23403G G27708T G28396A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540387
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F4B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T A9433T G10265A C14408T C14925Y G15380T A19650G A23403G G23621T G27841T C28291T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540389
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T C9195Y G10097A G13503K C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540390
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A G6647A C11124T C13860T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540392
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540398
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EE9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C25731Y C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540401
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F4D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540407
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F5B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A309G T772C T1905C C2005T A2869G C3037T G6352T C6445T C7267T C10868T C14408T C14741T G15652T A23403G G23438T G26062T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540409
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F13A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540414
 2020-08-25 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C A22206T C22227T A23403G G25049T G25062T C26801G C28657T C28932T G28960T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541213
 2020-08-25 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1281/2020
 ATTAAAGGTT1- C241T C2416T C3037T A7240C C11074T G11083T C14408T C16616T C21110T C21207T A23403G G25563T C26885T C27603T C27654T G28690T C28887T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_541233
 2020-08-25 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1301/2020
 ATTAAAGGTTT1- C241T C1059T C2003T C3037T C10319T C14408T A18424G C21304T A23403G C25276T G25563T G25907T C27686T C27964T C28472T C28869T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_547585
 2020-08-25 2020-09-24
 India hCoV-19/India/HR-IMT-BZ16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G3431T T5653C C11259T C12068A C14408T C18877T A21630G C22444T A23403G G25563T G25855T C25936T C26060T C26735T A28416G C28854T GCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29786-

EPI_ISL_547586
 2020-08-25 2020-09-24
 India hCoV-19/India/HR-IMT-BZ102/2020
 ATT1- C241T C3037T C4113T C7869T G8027T C14408T G14767T G16852A C18877T T19299G C21859A C22444T A23403G G25563T C26735T C27213T C28854T G29778T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_547588
 2020-08-25 2020-09-24
 India hCoV-19/India/HR-IMT-BZ140/2020
 ATTAAA1- G185T C241T G1306C C2106T G2164T C3037T C10039T C10369T C13860T C14408T C18877T G21255T C22444T A23403G G25563T C26735T C28854T CACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29739-

EPI_ISL_547965
 2020-08-25 2020-09-25
 Italy hCoV-19/Italy/SAR-ATS-246/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T T445C C1513T C2062T G2577T C3037T CC6285TT GAGGACGCGCAGGG6356- C14408T T18012C G21255C C22227T G22346T C22377T A23403G C24213G C26801G G27967A C28932T G29645T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_548025
 2020-08-25 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548040
 2020-08-25 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548041
 2020-08-25 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T A27354G GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_551579
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T C19884T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551584
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-995B42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551585
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-993F1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551587
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-993FFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551589
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- T931G C3037T G8017K G11083T C13536T C14408T G16075T A23403G C23731T C24912T C25810T C27970T A28624T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551596
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T G19816K A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551600
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995C5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T A9235G G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551601
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-99433C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551603
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9955DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G T25202K C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551605
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995B24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T10933C G11447A C14408T C21648T A23403G G24574A C25728T G27461T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551607
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995ADC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551613
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-993FDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C16394T C17104T G18028T A20268G TACATG21765- C22127T C22879A A23403G G23876A T24910C G25947T T26972C C27800A C29274T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551614
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3380C C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T T25202K A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551627
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-995C03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551633
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1297C C3037T C4084T G5942A C14408T C18877T C19185T TAT22189- C22444T A23403G C23939T G25563T C26408T C26735T G28373T C28854T G29151A G29212T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551645
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551649
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-993F75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551650
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995ACD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T G4105T C4391A C11124T C12138T C14408T G14792T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551651
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-993EF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T C4901T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C12099T C14230A C14408T C17939T G19056T C19718T G21800T A23403G G25563T G27632T C27804T C28744T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551654
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9940DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C274T C313T C3037T C14408T G22801T A23403G C27998T G28077C C28409T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551656
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9940EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C274T C313T C3037T C4002Y C6896Y C14408T G19525R G22801T A23403G C27998T G28077C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551662
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T G19816T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551664
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-99417E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1567A G1957T C3037T T7767C C8047T C14408T C17104T A20268G C22879A A23403G T25202K G25269C C27800A C29445T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551665
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-99432D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551670
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-993FC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T G3530C C14408T C21575T A23403G T25202K G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551675
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7165T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T G27916A C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551676
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-993F93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T T5059Y G9802T G12067T C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551683
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995544/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A513G C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551691
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-993FEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551696
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-995BF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T G25785T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551701
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995C8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T C20823T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551703
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-993FA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T G3452A C6286T C14408T C18788T G21255C C21614T C22227T A23403G C26801G C27012T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551705
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-99435A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551707
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9942A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3380C C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551710
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T G22205T A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551711
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-99559F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C313T C3037T G12378A C12756T C14408T C17634T G18391T A23403G G25981T GGG28881AAC G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551716
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-993F0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551717
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995BBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551722
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995C30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T G5210A C14408T C15324T C17470T G19455A C21191T A23148G A23403G C23802T T27125C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551723
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9940AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G19056T G21800T A23403G T25430G G25563T G27632T C27804T C28744T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551724
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9955CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C313T C3037T G12378A C12756T C14408T C17634T G18391T A23403G G25981T GGG28881AAC G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551726
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-993F84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1603C C3037T G10265A G11083T C14408T C17822T A18140G C18306T ATT21631- C22482T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551728
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T A8580G G9805T C14408T C17410T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551729
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551730
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9941F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551731
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995B9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551892
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9910DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C14408T A20268G A23403G C25731T G27463C G28703C C28833T G28851T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552149
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9927E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C8139T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552188
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-99468E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T C19934T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552189
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21099T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552191
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-994C31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1609T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T G25726T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552197
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C10854T C14408T A20268G A23403G C25731T G27463C C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552198
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994B34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552200
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9954B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1550A C3037T G3239A C6606T G7042T C9541T C9857T C14408T C15324T T17142A T17688C G21334T A23403G C25549T C27920T G28027T C28054T G28655A G28881A C29675T C29802T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552205
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99476D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552206
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9944EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T G28456T GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552211
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994C7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T G10265A G11083T C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552212
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99475E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T T28867Y C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552213
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994A82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A513G C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552214
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1385T G1738T C3037T G3242A G5830A C11916T C14408T C16887T A23403G G25563T C28087T G29764A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552217
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994EFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T G7954T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552220
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9948A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1589A C3037T A3627G T11974C C14408T C17430T A23403G G25302T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552221
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9944B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2434T C2471T C3037T C5055T G11851T C14408T C14786T G17523T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552225
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9948B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T C16092Y T20484G A23403G C23731T C25000T G25567A C28849G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552232
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9946AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552238
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552241
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C8090Y C10543T C14408T C18252T A23403G C24378T G28396A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552242
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994F38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C313T C3037T A4420R G12378A C12756T C14408T C17634T G18391T A23403G G25981T GGG28881AAC G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552243
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994BF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G22346T A23403G G23675K G26062T C26801G G27437A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552247
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994C5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1603C C3037T G10265A G11083T C14408T C17822T A18140G C18306T G20925A ATT21631- C22482T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552248
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C6968T C14408T A15984T G17058T C20946T C23248T A23403G C26750T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552249
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-99483D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2972R C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G C25466A G25563T C26735T T26876C C28292A C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552252
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994DB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T A2569R C3037T G8371T C9430T C10741T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25409C G25563T G26227T A26319G G28476C C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552256
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-99485B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T T3432G C7528T C14408T C18568T C18877T C22444T A23403G G25563T C26735T G27852T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552261
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552263
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994C8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1609T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T G25726T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552266
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-99540B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552267
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994F74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552271
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994A64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4174C C5055T G11083T G11851T G13762A C14408T C14786T A23403G G24812T C26895T G28028T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552275
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994F29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C313T C3037T G12378A C12756T C14408T C17634T G18391T A23403G G25981T GGG28881AAC G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552280
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9948F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4321T C5055T C9565T G11851T C14408T C14786T C15371T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552282
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-99486A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2135T C2416T C2455T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G23856T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552288
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-99541A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2110T C3037T C6286T C8090T C14408T G21255C C22227T G22801K A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552289
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A C23230M A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552291
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-99482E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C936T C1457T A2342G C3037T G3259T C5812T C11591T C14408T G17122T C18348T A23403G A26069G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552293
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994B61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G22346T A23403G G26062T C26801G G27437A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552296
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994CE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552298
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9946E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C6781T C7528T C14408T C15981T C18877T C22444T C23277T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552299
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994D2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T A2491G C3037T C3261T C3784Y T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552302
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9947F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T G9300A C14408T G21255C C22227T C23114T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552310
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994EA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G C25466A G25563T G26062T C26735T T26876C C27923Y C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552311
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994642/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T C6638T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552316
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994B52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T694C C1722T C3037T G3955T G10265A C14408T C15720T A15972G C19718T A23403G C27297T T28759C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552317
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994DE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552329
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552330
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994E59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2623T C3037T C8318A C11747T C14076T C14408T T14568C G19117T G20691T G21746A A23403G A24162G T24892C C28253T GGG28881AAC C29200T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552335
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-99474F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C313T C3037T G12378A C12756T C14408T C17634T G18391T C19602T A23403G G25981T GGG28881AAC G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552341
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994B25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2434T C2471T C3037T C5055T G11851T C14408T C14786T G17523T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552346
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9944C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C4002T G10097A C13536T C14408T C15738T C18118Y C21642Y A23403G C23731T C24912T G25440T C27970T C28674T GGG28881AAC G29734S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552349
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994ED1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15755T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552352
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994E3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G23311C A23403G C23557T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552353
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9946BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G T27671C G28371T C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552356
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994BDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C884T C3037T C4551T C8836T C9286Y C10189T C10775T C14408T T16276C C17766T C18877T C22444T A23403G C24138T G25563T C26735T C26822T C28163T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552357
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552362
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994CF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C15720T A15972G G16912T C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552363
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552367
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9945DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C15720T A15972G C19718T G22104T A23403G G26700T G28357T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552369
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552370
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994D5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3354T C7108T C8917T G10265A C10336T G11083T G11801A C14408T A18140G A23403G G23868T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552372
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1267T C3037T C6286T C9745T C14408T G19684T G21099T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552376
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15535T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552378
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-99479A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G19999T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G28980K G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552380
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994F0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T A9469G C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552382
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994D89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552385
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-994C13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29477T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552402
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994FA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552419
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994AFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552421
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-9947C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G5023T C6286T C14408T G21255C C22227T A23403G C25047G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552422
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-99477C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C313T C3037T G12378A C12756T C14408T C17634T G18391T A23403G G25981T GGG28881AAC G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552423
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994B16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G376T T469C C3037T T7767C T7984C C8047T T11459G C14408T C16658T C17104T G18214A C18796T A20268G C22879A A23403G G28851T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552426
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994FDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T G6341A ATT12627- C14120T C14408T C15540T G17019T C19884T T23002C A23403G C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552431
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994C40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C10543T C14408T C18252T A23403G C24378T G28396A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552432
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994C9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G18782T G21255C C22227T G22346T A23403G C26801G C28932T G29260T C29376T G29645T G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552433
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-995517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552438
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994E68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T C5284T G5950T G10097A C11752T C11941T C13536T C14408T G19732T G20931T A23403G C23731T CAG28869AGA GGG28881AAC G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552442
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/MILK-994E1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559760
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/QEUH-997CC5/2020
 G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_559761
 2020-08-25 2020-09-28
 United Kingdom hCoV-19/England/QEUH-999470/2020
 C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T G25726T C26735T T26876C G28975C G29399A G29427A AAAAAAAAAAAAAA29890-

EPI_ISL_560322
 2020-08-25 2020-09-28
 India hCoV-19/India/HR-IMT-BZ115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T TT316YW G526T G944K C3037T C4809T A10323G C11074Y G11083T C11767T G14245A C14408T G21770A A23403G G25552T G28325A TCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29753-

EPI_ISL_560801
 2020-08-25 2020-09-29
 United States hCoV-19/USA/MN-MDH-1714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G3216T G8083A T8953C C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_560802
 2020-08-25 2020-09-29
 United States hCoV-19/USA/MN-MDH-1715/2020
 ATTA1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T C22079A A23403G G25563T G25907T G26209T C27964T C28472T C28869T C29364T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_560803
 2020-08-25 2020-09-29
 United States hCoV-19/USA/MN-MDH-1716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T C22079A A23403G G25563T G25907T C27964T C28472T C28869T C29364T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_561339
 2020-08-25 2020-09-30
 India hCoV-19/India/HR-IMT-BZ124/2020
 G185T C241T G1306C C2106T G2164T C3037T C10039T C10369T A12417R C13860T C14408T C18877T G21255T C22444T A23403G G25563T C26735T C28854T C29722T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_561340
 2020-08-25 2020-09-30
 India hCoV-19/India/HR-IMT-BZ144/2020
 A1- C241T C320Y C2925T C3037T A5839G C10039T C12513T C14408T C14724T C18877T C22444T A23403G G25563T C26735T C28603T C28819T C28854T C29445T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_561341
 2020-08-25 2020-09-30
 India hCoV-19/India/HR-IMT-BZ164/2020
 ATTA1- C241T C320Y C3037T G3994T C4320T C6525Y C11704T A12417R C14408T C16049T C18877T C22444T A23403G G23587T G25563T G25781C C26735T C28854T G28903T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_562655
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC13928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C3656T C4887Y T7540C C14408T G15594T C16111T G16647T C18555T G22992A G23401A A23403G C28377T GGG28881AAC GAATGGCTG28899- TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562687
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC9905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T AAGTCATTT686- A1163T C3037T G4511A T7540C A13394R C14408T G15594T G16603A G16647T C18440T C18555T G22992A G23401A A23403G T23721Y GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562727
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC9998/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562735
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC10393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3044T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_562749
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC9884/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C4113Y T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_562761
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC10004/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C3738T C4832T T7540C C9491T C14408T G16647T C18555T C19170T G21800T C21952T G22992A G23401A A23403G C26571T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562762
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC10006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562763
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC10017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T G7328T T7540C C14408T G16647T C18555T T21369C G22992A G23401A A23403G GGG28881AAC C29721T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562899
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC10397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562951
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC10536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T G4148K T7540C C10252T C13019T C14408T G16647T C18555T A22429G G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563323
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC11304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C G14123A C14408T G16647T C18555T G22992A G23401A A23403G C23525Y GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563324
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC11305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G14123R C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563412
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC11551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C3738T C4832T T7540C C14408T G16647T C18555T C19170T G21800T G22992A G23401A A23403G C25703T C26571T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563413
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC11552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T6226C T7540C A14084G C14408T G16647T C18555T G18922R G22992A G23401A A23403G C23707T T26102K T27785C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563833
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC13780/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C T11192C C12763T C14408T C16247T G16647T A17337G C18555T G22992A G23401A A23403G A28768W GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563860
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC13870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C5144T G7328T T7540C C14408T G16647T C18555T T21369C A21684T G22992A G23401A A23403G GGG28881AAC C29721T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563971
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC14109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- C241T C920T A1163T C3037T C7471T T7540C C14408T G16647T A17337G G17721T C18555T G22992A C23191T G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565663
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC9705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G GGG28881AAC TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_565667
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC9713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G C28256T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565673
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC9722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C7851Y C14408T G15594T G16647T C18555T G22992A G23401A A23403G C23854Y G27382K GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565679
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC9730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T G4907T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C27654T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565763
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC9883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565764
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC9889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565767
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC9893/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C C14408T C14980T G16647T C18555T C18568T G22992A G23401A A23403G C23457A C24026T C28706Y GGG28881AAC C29774T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565769
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC9898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T C14768T G16647T C18555T C18657T A21137G G22992A G23401A A23403G T23677A C23895T GGG28881AAC C29420T TGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29840-

EPI_ISL_565770
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC9899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C9996T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565772
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC9902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7321T T7540C A14084G C14408T G16647T C18555T C21762Y G22992A G23401A A23403G C23707T T27785C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565781
 2020-08-25 2020-09-30
 Australia hCoV-19/Australia/VIC9921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T10717C C14408T G16647T C18555T G22226T G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_568293
 2020-08-25 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-99001B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C66A C241T C313T A861G C3037T G8796T G11516A C14408T C17285T C17440T G19872T A23403G G25855C G25947A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568353
 2020-08-25 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C9803T C14408T C21302T CG21304AA GCTTTA22289- A23403G G27816T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568386
 2020-08-25 2020-10-01
 United Kingdom hCoV-19/Scotland/MILK-993C8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T CG21304AA C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568390
 2020-08-25 2020-10-01
 United Kingdom hCoV-19/England/QEUH-99813E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T G3452A C6286T C14408T G21255C C21614T C22227T A23403G T25202K C26801G C27012T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568438
 2020-08-25 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T C18647T T20661C G21255C C22227T A23403G C26801G C27059T C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568459
 2020-08-25 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F10D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C7299T C14408T G21255C A22206T C22227T A23403G G25049T G25062T C26801G C28657T C28932T G28960T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW023474
 2020-08-25 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1281/2020
 ATTAAAGGTT1- C241T C2416T C3037T A7240C C11074T G11083T C14408T C16616T C21110T C21207T A23403G G25563T C26885T C27603T C27654T G28690T C28887T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

MW023494
 2020-08-25 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1301/2020
 ATTAAAGGTTT1- C241T C1059T C2003T C3037T C10319T C14408T A18424G C21304T A23403G C25276T G25563T G25907T C27686T C27964T C28472T C28869T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_522685 MT973324
 2020-08-26 2020-08-26
 Australia SARS-CoV-2/human/AUS/TAS258/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C4540T A4624G C8782T T9477A C14805T G25979T G26062T T28144C C28311T C28657T C28863T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_523213
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A14940G C20844T A23403G G25563T C25688T C28486T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523214
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T C20844T A23403G G25563T C25688T C28486T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523215
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T C28486T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523216
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T GTTATG515- C1059T C3037T T13006C C14408T A23403G G25563T C25688T C28486T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523217
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T C20844T A23403G G25563T C25688T C28486T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523218
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C854T C3037T C12357T C14408T C17135T G17632T C18877T G20718T C22444T A23403G G25563T C26735T C28854T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523220
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTTATG515- C1059T C2445T C3037T T13006C C14408T A20321G A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523221
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2445T C3037T T13006C C14408T A20321G A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523222
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3870G T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523223
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2445T C3037T T13006C C13620A C14408T A20321G A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523225
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523226
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523227
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A15238G A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523228
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2445T C3037T T13006C C14408T G14857T A20321G A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523229
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C11235T T13006C C14408T A23403G G25563T C25688T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523230
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T A23403G G25563T C25688T C28486T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523231
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T13006C C14408T C20844T A23403G G25563T C25688T C28486T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523233
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T9427A T13006C C14408T A23403G G25563T C25688T C28486T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523274
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/GE-EMC-295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2695T C3037T G5194T A5560G G10265A C14408T C15141T A15972G T19497C C19718T C21077T A23403G G26439T C26461T G28077T T28759C GGG28881AAC C29149T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523292
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C854T C3037T C12357T C14408T C17135T C17410T G17632T C18877T G20718T C22444T A23403G G25563T C26735T C28854T C28948T C29520T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523293
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C854T C3037T C12357T C14408T C17135T C17410T G17632T C18877T G20718T C22444T A23403G G25563T C26735T C28854T C29520T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523294
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6258T C12357T C14408T C17135T G17632T C18877T C19512T G20718T C22444T A23403G G25563T C26735T C28854T C29719G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523296
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9866T C12357T C14408T C17135T G17632T C18877T C19512T G20718T G22232C C22444T A23403G G25563T C26735T C28854T C29719G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523297
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9866T C12357T C14408T C17135T G17632T C18877T C19512T G20718T C22444T A23403G G25563T C26735T C28854T C29719G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523299
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C854T C3037T C7000T C12357T C14408T C17135T C17410T G17632T C18877T G20718T C22444T A23403G G25563T T25711C C26735T C28854T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523310
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T G14274A C14408T G20568T A23403G A24862G C25936T C26013T C26164T G27857T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523311
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T G14274A C14408T G20568T A23403G A24862G C25936T C26013T C26164T G27857T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523312
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C1380T C3037T G3251T G14274A C14408T A23403G A24862G C25936T C26013T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29730-

EPI_ISL_523313
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13989T C14408T A23403G A24862G G26660T C28332T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523314
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19735T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523315
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523316
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C20762T G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523317
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A5107T T9766C C10449T G12315A A14121G C14408T C21637T A23403G A24862G G27358T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523318
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523319
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523320
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523321
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C20762T G25979T T28144C C28657T C28863T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523322
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523323
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523324
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523325
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13410T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523326
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523327
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523328
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523329
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523330
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23271T A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523331
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A19137G A23403G A24862G G26660T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523333
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C14408T C15848T A16474G C20132T A23403G G25364A G25563T C29732T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523386
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T C11109T G12794A C14408T C15848T A16474G C20132T A23403G G25364A G25563T C29732T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523387
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1348T C1594T C3037T A3148G T6634C C11109T C14408T A23403G G25563T C27707T GTCCTATTCACTTCTATTCTAAATGGTATATTAGAGTAGGAGCTAGAAAATCAGCACCTTTAATTGAATTGTGCGTGGATGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATACAGTTTCCTGTTTACCTTTTACAATTAATTGCCAGGAACCTAAATTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATC28003- GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523388
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C ATG1605- T2359C T5028A C5142A C17410T A19831G G22661T A22920T C26078T G27390T A28877G A29500G GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523389
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-266/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T G11083T C11109T G12794A C13671T C14408T T16476C C22916A T23018C A23403G G24000T G25563T T26047G T26076C G27261T AA27269GT C28535A C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523394
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C1594T C3037T G4207T C7732T C11109T G12794A C14408T A23403G G25563T C29743T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523395
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14114T C14408T A20268G C22997T A23403G A24532G C24865T A26115T G26951T G27670T C28849T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523396
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-274/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T C14114T C14408T A20268G C22997T A23403G A24532G C24865T A26115T G26951T C28849T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523397
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/NB-EMC-275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C854T C3037T C5986T C12357T C14408T C17135T C17410T G17632T C18877T G20718T C22444T A23403G G25563T C26735T C28854T C29520T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523518
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523520
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T T10825C C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523521
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C11109T C14408T A23403G G25563T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523527
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/un-EMC-771/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C20148T A23403G G29422T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523559
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A A23403G G27827T A28108G GGG28881AAC AGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29827-

EPI_ISL_523560
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G17259T G19480A A23403G G27827T GGG28881AAC TGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29829-

EPI_ISL_523563
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G17259T G19480A G21193T A23403G G27827T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523564
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G17259T G19480A A23403G G27827T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523565
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G17259T G19480A A23403G G27827T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523566
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZE-EMC-67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G17259T G19480A A23403G G27827T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523579
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C14408T C17004T C19170T G19509A T22327C A23403G C26313T T26504C GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523584
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523585
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523586
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C843T C1594T C3037T C5512T C9246T C10029T C11109T C12415T C14408T G17790T T19159G A23403G C25006T G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523591
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C10029T C11109T C12415T C14408T G17790T T19159G A23403G C25006T G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523592
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C10029T C11109T C12415T C14408T G17790T T19159G A23403G C25006T G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523593
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-251/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C10029T C11109T C12415T C14408T G17790T T19159G A23403G C25006T G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523612
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G A23403G G25563T G25565A G28655T GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_523658
 2020-08-26 2020-08-26
 Netherlands hCoV-19/Netherlands/ZH-EMC-316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G19480A A23403G G25523T GGG28881AAC GCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29830-

EPI_ISL_527400
 2020-08-26 2020-09-04
 Australia hCoV-19/Australia/NSW2718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8947T C8950T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24764T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_529228
 2020-08-26 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169ECE/2020
 ATTA1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T G18756T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_530338
 2020-08-26 2020-09-11
 Australia hCoV-19/Australia/NSW2741/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8950T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24764T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_530360
 2020-08-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-990682/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530363
 2020-08-26 2020-09-11
 United Kingdom hCoV-19/Northern Ireland/QEUH-9905FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530380
 2020-08-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-98FD63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530383
 2020-08-26 2020-09-11
 United Kingdom hCoV-19/England/QEUH-98FC75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T T9151C C9430T C9693T C13887T C14408T G16853T G21796T C23248T A23403G G25429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534223
 2020-08-26 2020-09-11
 Latvia hCoV-19/Latvia/133/2020/P1
 C241T G940A C3037T A3327G A3569G C3695T A6211G A9848G C13199A C14408T C19488T A23403G G25720T C26527T G28083T C28391T T28756C GGG28881AAC

EPI_ISL_534439
 2020-08-26 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-99821D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C8606T C14408T T20661C G21255C C22227T A23403G C26801G C27600Y C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534440
 2020-08-26 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-99822C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534442
 2020-08-26 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-998259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534443
 2020-08-26 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-998268/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534444
 2020-08-26 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-99820E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536699 MW035497
 2020-08-26 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1328/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2453T C3037T A6616G G10265A G10870T C14408T C15579T C19972T A23403G G24794T A25256T GGG28881AAC C29724T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536785 MW035578
 2020-08-26 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C140T C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C G11083T C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537148
 2020-08-26 2020-09-16
 United Kingdom hCoV-19/England/QEUH-99824A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537158
 2020-08-26 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9981A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T C29722Y A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537174
 2020-08-26 2020-09-16
 United Kingdom hCoV-19/England/QEUH-998295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537189
 2020-08-26 2020-09-16
 United Kingdom hCoV-19/England/QEUH-998277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G4960K C6445T T10006C C10868T C14408T G15652T C17288T A23403G G23438T G25273T AG28877TC GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537190
 2020-08-26 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9981D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7037T G9130T C14408T T20973A A23403G T27319C G28487A C28868T GGG28881AAC G29212T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537192
 2020-08-26 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9982A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7037T G9130T C14408T T20973A A23403G T27319C G28487A C28868T GGG28881AAC G29212T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539421 LR882442
 2020-08-26 2020-09-18
 Switzerland 260112
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C T540W A642M C1513T C3037T A3590M G3759R A5325R T5360K C5400Y T5406K A5535R A5563R C6286T T6893K T6957Y A9859W C14408T A16210W C16338Y A16395R G21255C C22227T G22346K C22377T G22484K A23403G C25006Y C26801G C27005Y A27399R G28086K C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539423 LR882446
 2020-08-26 2020-09-18
 Switzerland 260114
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C635Y C683Y C1513T C3037T T3572W AA3580MM C6286T C14408T A16210W C18744Y G21255C C22227T G22346K C22377T G23262K A23403G C26801G C28253Y C28706T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539425
 2020-08-26 2020-09-18
 Switzerland hCoV-19/Switzerland/BL-ETHZ-260116_965_G10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C842T T1359C C3037T C7765T G9190T C10702T G11083T C11109T C14408T G15243K C17690Y C18877T A23403G G24959K G25563T C25886T C27429T G28851C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539426 LR882440
 2020-08-26 2020-09-18
 Switzerland 260117
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C245T C313T C3037T G11083T C11747T C14408T C17634T G20011T C20628T A23403G G23611T GGG28881AAC C29632T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539429 LR882436
 2020-08-26 2020-09-18
 Switzerland 260122
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C829T C3037T C3738T G9130T C14408T C16111T A23403G T27319C G28487A C28868T GGG28881AAC G29135A G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539430
 2020-08-26 2020-09-18
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-260123_968_A09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T A6921R T6935Y T6959K G6961K C13671Y C14408T C14805T C16049T G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539432 LR882454
 2020-08-26 2020-09-18
 Switzerland 260125
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T T7035W C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539433
 2020-08-26 2020-09-18
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-260126_968_F09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A513R A642W C815Y C1701M A2783W T2837Y G2999K C3037T C3096Y G4207R G5367S A5533W G5931T A6878M G7016R C7735Y A8301W C8354Y C8499T G8853K G9383A CA9552YR C9891T C10726M G12057S C13164Y T13299W C13458Y C13829Y C14408T A16210W C16816Y G16852A C17004T A17498W A20268G C21191T C21301Y C21513T G22289T G22569S A23122M A23254W A23403G G23429K C23595Y C24213Y C24381T G25654K C26204Y G27271R A28035W C28253Y G28975T T29325Y G29402T C29555T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539438
 2020-08-26 2020-09-18
 Switzerland hCoV-19/Switzerland/BE-ETHZ-260133_972_A02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T C1471Y G1696T C3037T A6995W T7023Y T7035W G11083T C14408T G14829T C18252T A23403G C25797T C25803T C26313Y G28396R GGG28881AAC C29171T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539440 LR882465
 2020-08-26 2020-09-18
 Switzerland 260144
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539444 LR882449
 2020-08-26 2020-09-18
 Switzerland 260148
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T G9130T C14408T C16111T C17012T A23403G G25500A T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539446 LR882459
 2020-08-26 2020-09-18
 Switzerland 260151
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T595C T3031Y C3037T A7003M C7164T A8244G G8408A G12191T C14408T T17675Y C19488T C21622T A23403G T26171A C28500T GGG28881AAC G29254A C29409T G29474T G29751C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539447 LR882450
 2020-08-26 2020-09-18
 Switzerland 260152
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3714M C4543T C5351Y G5629T T7035W G9526T C11497T G13993T C14408T G15766T A16210W A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G27967K G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539448 LR882468
 2020-08-26 2020-09-18
 Switzerland 260153
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T T7033W G9130T G12070K C14408T C16111T T17675Y A23403G G25500A T27319C G28487A C28868T GGG28881AAC G29543T G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539452 LR882452
 2020-08-26 2020-09-18
 Switzerland 260158
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G526S G2914R C3037T A3097R C3738T T6978K G9130T C14408T C16111T G19009K A23403G A24003C T27319C G28487A C28868T GGG28881AAC G29706T G29810T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539459 LR882474
 2020-08-26 2020-09-18
 Switzerland 260167
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1437T C1513T C2003Y C3037T C6286T T6910Y T6996W T7035W C14408T G18255K G21255C C22227T G22346K C22377T A23403G C26801G C28706T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539590
 2020-08-26 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T T20273C C20759T C21727T A23403G GGG28881AAC CTCCTGCTAGAATGG28890- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539591
 2020-08-26 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18348Y C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539897
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FB0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T C313T C2453T C3037T C14408T G18255T A23403G A27068C G28396A G28851T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539898
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F97E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539911
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998CB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539914
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FBD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C5817T T7767C C8047T A10724G A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539917
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FCDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539921
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FFE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539923
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-990163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G18653A G22652A A23403G G25617T G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539924
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FBC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A G11083T C14408T C15720T A15972G G16912T C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539925
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-990312/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T G9479T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539930
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FCEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C8809T A9848G C11956T C13199A C14408T C18839T C19488T A23403G G25691T C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539931
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9982C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7037T G9130T C14408T T20973A A23403G T27319C G28487A C28868T GGG28881AAC G29212T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539934
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FB3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C190T C241T C3037T A3786G C5055T G11851T C14408T C14786T G19348T A23403G G24812T C26895T G28817T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539936
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FF21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G A10508W C11916T C14408T C17304T C18998T A21317C A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539937
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FA02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C4582T C6286T C14408T C20628T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539938
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9901EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539946
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FF30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539948
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FE06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C13536T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539952
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998C79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539956
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539957
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-990172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539964
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9901DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539974
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FB1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8802T GATATGGTT11267- T12166G C14408T C17410T T17886C C20402T A23403G GGG28881AAC C29545A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539976
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998C4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28093T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539977
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-990066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539978
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998E28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539979
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-990303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C3037T C4683T C5512T C6990T G9526T T11587C C14408T C18877T G20518T A23403G G25563T G25687T C25710T C26735T G28875T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539981
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9982B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A994G C3037T G4105T C4391A C11124T C13792T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539990
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-990075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C8318A C14408T G21255C C21614T C22227T A23403G C26801G C26822T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539994
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FCC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T G3452A C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27012T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539996
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99036D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1426T C1471T C3037T C6568T C7162T C12116T C12809T C14408T C15396T G20718T A23403G C27532T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539998
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9903A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T A12755G C14408T A23403G G24812T C26895T GGG28881AAC C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540000
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998BB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C18166T G19542T C19718T CG21304AA C22388T A23403G C26060T A27455G C28435T G28655T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540003
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-990093/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540005
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FDAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C5817T T7767C C8047T A10724G A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540006
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-990084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2293T C3037T G6052A C10319T T10906C C14408T C18693T G19872T A22974G A23403G A25271G G25563T G25855T C26895T C27964T G29254T G29474T G29692T G29764T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540007
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FEF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T G21255C G22104T C22227T A23403G G25650T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540008
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-998383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540009
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T G6341A ATT12627- C14120T C14408T C15540T G17019T C19884T A23403G C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540011
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998CC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540024
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99000C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540025
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99038B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772Y A2869R C3037T C4543Y G5629K G6352K C6445Y G9526K C10868Y C11497Y G13993K T14313Y C14408T G15652K G15766K A16889R G17019K C18877Y G22468K G22992R A23403G G23438K C25006Y G25563K C25710Y C26447Y C26735Y T26876Y GGG28881RRS G28975S C29095Y G29399R G29427R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540026
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-990057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540028
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-990048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4406T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540029
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F9F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540040
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-998CE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T25264C G25266T T26972C C27800A C28957T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540043
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FB69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C A1633G C3037T C6286T C14408T G16068T G18948T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540046
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FAF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C8090T C14408T A19492G G21255C C22227T A23403G A25592T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540047
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FC93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C884T C3037T C4551T C8836T C10189T C10775T C14408T T16276C C17766T C18877T C22444T A23403G C24138T G25563T C26735T C26822T C28163T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540050
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-98FC66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540051
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998E55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A A23403G C23625T A25910G T28004Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540052
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-990400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C884T C3037T C4551T C8836T C10189T C10775T C14408T T16276C C17766T C18877T C22444T A23403G C24138T G25563T C26735T C26822T C28163T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540056
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998BF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540058
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FFD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540060
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FCFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T T9151C C9430T C9693T C13887T C14408T G16853T G21796T C23248T A23403G G25429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540063
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-990145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540067
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FEBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28253Y C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540068
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998C3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28093T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540070
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FBB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G8615R C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540071
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998CD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G G28580T C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540074
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99044C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540075
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FC84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540080
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FF8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C15738T C17012T T18750C C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540082
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998E46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540086
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998C88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540089
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FB87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540092
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9900A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T C18693Y G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540094
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FF5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540097
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FD45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T A15681T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540098
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99037C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C2156T C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540103
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FBE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G G25471T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540105
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-990233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A G6041C C8293T A10323G C14408T C15848T C16084T C19862T T19893C C21381T A23403G C26625T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540122
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540123
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T G6341A ATT12627- C14120T C14408T C15540T G17019T C19884T A23403G C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540127
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/Northern Ireland/QEUH-990242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T C19854T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540129
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99029D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2922C C3037T A4926C C14408T C15049T G15602A G21624T A23403G GGG28881AAC G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540131
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998BC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540132
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-99039A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G15652K C18377Y G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540134
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F7FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C25976Y C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540135
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998E19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540137
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998BE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T C14491T A23403G G25617T C26533Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540651
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/MILK-992161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G G25720T C26078T C26527T G28083T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540661
 2020-08-26 2020-09-21
 United Kingdom hCoV-19/England/MILK-992231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T G9479T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547736
 2020-08-26 2020-09-24
 United States hCoV-19/USA/WI-GMF-17327/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T T1592C C2416T C3037T C6113T G11828A C14408T T16530A G21372T A23403G G25563T C25916T C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548042
 2020-08-26 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G G21123T A23403G C23731T CCAGATCAGTTT27629- GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548043
 2020-08-26 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G G16943T A23403G C23731T A27489G CCAGATCAGTTT27629- GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548044
 2020-08-26 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G G16943T A23403G C23731T A27489G CCAGATCAGTTT27629- GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_549028
 2020-08-26 2020-09-28
 Norway hCoV-19/Norway/3195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C936T C3037T G3431A G6413A C7267T C9120T C13115T C14408T C18032T C20233T A23403G G24926T A27674T G28812T GGG28881AAC A29350G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549036
 2020-08-26 2020-09-28
 Norway hCoV-19/Norway/3208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1606C C2062T C3037T C5184A C6027A C13887T C14408T C18687T C23248T A23403G GGG28881AAC C29367G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549037
 2020-08-26 2020-09-28
 Norway hCoV-19/Norway/3210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1418A C3037T G3431T T7780C C10755T G11083T G11842A A12759G C14408T C17463G G18292T A20268G G23224T A23403G C25889T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550726
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99C48C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551019
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAE50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C1912T C3037T C3373A C6883T C9113T T10363C C11620T C12741T C14408T G14767T C19269T C21637T G21724A A23403G C27684T A28169G C28833T GGG28881AAC TTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTA29728- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551039
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAE7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4406T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551158
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAE32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T G6404T G10265A -11075TTT G11083T C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29348T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551176
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAE41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T C5339T C5878Y C12809T C14408T A17376G G18703T G21330T A23403G C27213T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551206
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAE6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C11902T C14408T G21255C C22227T G22346T C22377T C23114T A23403G T25202K C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551208
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAE23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1812T C3037T C3602T C6941T C14408T C15324T C15824T A16044T G21295T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551267
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAE8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551578
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-994439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T G19780T A23403G C23731T G28683A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551611
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-994396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T G25996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551612
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9942B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T A8882G C12809T C14408T C18647T C19662T A23403G C25521T T28251C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551620
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9943A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G T25202K G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551634
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9942D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T A8882G C12809T C14408T C18647T C19662T A23403G C25521T T28251C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551638
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99423F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G G25494T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551653
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-994387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G213K C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T T8743C C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G16377T G16647A G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551655
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-994448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T G28683A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551657
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-994475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G G23426T T24910C G25494T C25658T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551674
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9942F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A22629R G23311C A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551678
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9942C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551712
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99430F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14372Y C14408T G19732T A23403G C23731T G25996T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551718
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9943F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C G2632T C3037T C6286T C14408T T16926C G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551835
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551836
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990B56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551839
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990C53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1162G C3037T C4002T G10097A G11335T C12513T C13536T C14408T T18033C A23403G C23731T C25624T C28432T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551842
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990CAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551844
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990B92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C7851T C14408T G21255C C22227T G22346T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551845
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990A95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29648T G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551846
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9910FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204C C241T C1288T C3037T T3163C C4345T C9836T C12053T C14408T G22468T A23403G T25150C T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551848
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-99096B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551851
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-99134E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G25567A C28849G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551852
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990FA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1267T C3037T C6286T C9745T C14408T G21099T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551854
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G23311C A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551857
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9912E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21099T G21255C C21762Y C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551859
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990A3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2992C C3037T G11447A C14408T C21648T A23403G G25302A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551862
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990A2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204C C241T C1288T C3037T T3163C C4345T C9836T C12053T C14408T G22468T A23403G T25150C T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551864
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9912AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T G8581K C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC C29109Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551866
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990F87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T C26858T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551868
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-99092F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551870
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9911AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5694T C6696T C14408T T18083C G18412T C18568T T23398C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551871
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9911BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551873
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990AB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551878
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-99128D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T A4469G C8318A C10615T C14408T A18182C G18859T G21624T C21846T A23403G C26571A GGG28881AAC C29077T T29479A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551884
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9907DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G19999T G21255C C21614T C22227T A23403G C26801G C27944T C28932T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551901
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990D50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551904
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990A1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C6033T C14408T A23403G G25617T C28435T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551905
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990C9F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G18782T G21255C C22227T G22346T A23403G C26801G C28932T C29376T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551909
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T T3592C C6286T G8178A C13517T C14408T G20274T G21255C C22227T A23403G C26801G C27393T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551910
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-99094D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551914
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9908E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C5907T C13247T C14408T C14937T C16393T T18144C A23403G C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551917
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9910ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T C3330Y T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551924
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T G4399T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551927
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-992C15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C11620Y C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551928
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T C18377T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551934
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9936AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G23311C A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551935
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992DF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T G6404T G10265A -11075TTT G11083T C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29348T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551948
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-991E4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5773C T7767C C8047T A9175G C14408T C17104T A19818G A20268G C22879A A23403G C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551949
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-992CF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G G24098T C26060T GGG28881AAC G29227T C29466T G29706T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551950
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9933F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T G3452A C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27012T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551953
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C13035T C14408T G14792T C15848T C18788T G19254T T19893C A21137G G22335T A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551955
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992C06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G12817A C14408T G14414T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551957
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992D7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C21742Y C22388T A23403G G23426K C26060T GGG28881AAC C28948Y G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551959
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9932C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2306T C3037T G10396T C14408T C18877T A19163G TAT22189- C22444T A23403G G25563T C26735T G28655T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551966
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992D30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T C5339T C12809T C14408T A17376G G18703T G21330T A23403G C27213T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551974
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9936BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C T3766C T4346G C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G26439T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551975
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551978
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992E00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3393T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551981
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992D9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T G3452A C6286T G11083K C14408T G21255C C21614T C22227T A23403G G24933K C26801G C27012T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551983
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-99137B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T A2895G C3037T C6395T C8299T C11020T C11095T A12410G C14408T C17125T C17550T A18366G C18788T T19839C C20956T T21093C A23403G C25703T C25904T G27561T T28406A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551987
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992D03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T C5339T C7764Y C12809T C14408T A17376G G18703T A23403G C27213T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551989
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992C24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T C5339T C12809T C14408T A17376G G18703T A23403G C27213T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551995
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992F49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G G25987T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551996
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992B72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552003
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-992CCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552004
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992B81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552007
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G23311C A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552010
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-99136C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1815R C3037T G11230T C14408T A21137R A23403G T24088C G25617T A26760T G26792T C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552012
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993634/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T G21295T C21855T A23403G G25314T A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552016
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T G21295T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552024
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992C33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552027
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992BAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7165T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552029
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992E4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T G21123K G21295T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552031
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99342B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T G6344T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552033
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992D8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C19185T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552034
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9934A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T T6322A G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C22432T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552035
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99340D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G3514T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G14874T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552039
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992D4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T G11083T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G20489T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552040
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-993476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C14790M C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552045
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-992C51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552048
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C A21643R C22227T A23403G T26609C C26801G C26882Y A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552052
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992CAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G6422A C6723T C9319T G10097A C13536T C14408T C16762T G22661T A23403G C23731T C25006T GGG28881AAC G29449T G29734T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552054
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9930AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C25728Y C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552058
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-993115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552061
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992C60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C8950T C9430T C14408T A15477T C18395T AGA20622TTT C22295Y A23403G C23730T G25563T A26319G G28371T C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552062
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-992CE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- G21793T C22879A A23403G T24910C G25494T T26972C C27800A C29358T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552065
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C1884T C3037T G9802T G12067T C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552067
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G213K C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T T8743C C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G16377T G16647A G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552071
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992EF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C17934A A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552072
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552073
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2061T C3037T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552081
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-993467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T G18756T A20268G TACATG21765- C22879A A23403G T24910C G25494T G26152T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552089
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T G4399T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552099
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99369E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2110T C3037T C6286T C8090T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552100
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992EB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552103
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C11620T C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552104
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992FB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C664T C3037T T6069C T11443Y C14408T A20268G G22017T A23403G T26897C G27703T C28706T C28854T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552107
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2585T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552112
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2110T C3037T C6286T C8090T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552118
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99333D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T C19586T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552123
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992D21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27224R GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552130
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992C7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A901R C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552133
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T C18377T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552137
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992EC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552140
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99350A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552141
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992E6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552144
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9931BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552146
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992D5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G G29810K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552150
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9934FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T C19586Y T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552155
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992F3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T A13758G C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552159
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T A2596G C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G G28371T C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552163
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992F1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552165
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992C42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T T5408Y C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552167
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T G10265A G11083T C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552168
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992E2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T G3871T C5183T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552169
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992F0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4704T G5708R T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G G20995T TACATG21765- G21800T C22879A A23403G T24910C G25494T T26972C C27800A G29734C G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552171
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-992F76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G6553A C7926T C9745T C13329T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552175
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99335B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552179
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99269F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2710T C3037T G4105T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A23403G C25658T C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552181
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99334C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T383C C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552182
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-992BCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G10565T C12114T C12400Y C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552192
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9938F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552201
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99390E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G A27373G G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552219
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T C4901T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C12099T C14230A C14408T C17939T G19056T G21800T A23403G G25563T G27632T C27804T C28744T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552245
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9938D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552257
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C2156T C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C25728T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552268
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99492B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T G20134T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552284
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-9939D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C G529T C3037T C5170T C6286T G7798T G11132T C14408T A14578G G21255C C22227T A23403G G25049T C26801G C28232T G28350A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552312
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-994A0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T A8882G C12809T C14408T C18647T C19662T A23403G C25521T T28251C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552323
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99386B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552325
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99394A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552332
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993A0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552334
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-993A29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552350
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-995061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G G27204T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552354
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T G11083T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G23856T G25563T C25710T C26735T T26876C T26879C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552358
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99391D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552371
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99392C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T G8102K C14408T C15324T A16044T G21295T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552381
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993A83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2110T C3037T C6286T C8090T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552389
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-994A37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T T19344Y G19816T G22468K A23403G G25471T GGG28881AAC G29757K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552401
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552418
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-99491C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T C8752T G12988T C14408T G15598A C17104T G18028T A19736G A20268G A21137G TACATG21765- G21800T C22879A A23403G T24910C G25494T C25791T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552429
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-994A28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T G11083T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T26879C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552440
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993A74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552443
 2020-08-26 2020-09-28
 United Kingdom hCoV-19/England/MILK-993A47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T T3478W C8683T C12445Y C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560804
 2020-08-26 2020-09-29
 United States hCoV-19/USA/MN-MDH-1717/2020
 ATTA1- C241T C3037T C7518T C14408T T15993C C18486T A20268G T22162C A23403G C27590T C28854T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_562174
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC9920/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G G27282A GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562597
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC10131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G11083K C14408T G15594T G16647T C18555T G22992A G23401A A23403G -25700CCC C28791T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562728
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC10009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25352T GGG28881AAC G28925K GC29773- TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_562732
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC10179/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25352T GGG28881AAC G28925K GC29773- CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_562734
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC10390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3044T T7540C C10790T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562737
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC11218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T T14551Y G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_562793
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC10115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_562794
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC10116/2020
 ATTAAAGGTTTATAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562810
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC10155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562811
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC10157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C3738T C4832T T7540C C9491T C14408T G16647T C18555T C19170T G21800T C21952T G22992A G23401A A23403G C26571T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_562813
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC10167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C7162T T7540C C13860T C14408T G16647T C18555T A21446G G22992A G23401A A23403G A26927G C27942T C28313T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562822
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC10200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C3738T C4832T T7540C C9491T G11083K C14408T G16647T C18555T C19170T G21800T C21952T G22992A G23401A A23403G C26571T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_562826
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC10216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C506T A1163T C3037T G5542R C7600T G7798T C14408T A23403G T23548C G27390T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_562829
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC10221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C G26976K G27390T GGG28881AAC G29017C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562832
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC10229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C506T A1163T G2755K C3037T T6564Y C7600T G7798T C14408T A23403G T23548C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562837
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC10242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C3738T C4832T T7540C C9491T C14408T G16647T C18555T C19170T G21800T C21952T G22992A G23401A A23403G C26571T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562847
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC10265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C4002Y T7540C C14408T G16647T A17337G C18555T C22227T G22992A G23401A A23403G C23655T C26110Y C26408Y GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_563301
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC11217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29347Y TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563302
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC11220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563326
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC11316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3634T T7540C C9996T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563335
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC11338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C4406T T7540C C14408T G16647T C18555T G22992A G23401A A23403G A23632T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563337
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC11340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18814T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563341
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC11349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563414
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC11554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563848
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC13831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5144T T7540C G11335T C14408T G16647T C18555T T21369C G22992A G23401A A23403G C24337T GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563853
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC13845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563972
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC14110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C3738T C4832T T7540C C14408T G16647T C18555T C19170T G21800T G22992A G23401A A23403G C25703T C26571T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565762
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC9881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565765
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC9890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6347Y T7260K T7540C C14408T G16647T C18555T G22992A G23401A A23403G C27110Y T28098G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565777
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC9908/2020
 ATT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565778
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC9909/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCT1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565780
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC9918/2020
 ATTAAAGGTTTATACC1- C241T A1163T C3037T C3738Y C4832Y C5144Y T7540C C14408T G16647T C18555T C19170Y G21800K T21925Y G22992A G23401A A23403G C25703Y C26571Y C27493Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565783
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC9925/2020
 ATTAAAGGTTTA1- C66T C241T A1163T C3037T T7540C C10030A C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565784
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC9927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2227T C3037T T7540C A13488G C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G C24897T C25624T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565787
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC9936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C A11991R C14408T G16647T C18555T G22992A G23401A A23403G A23999C GGG28881AAC A29782R AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565813
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC9969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3164A T7540C C12073Y C14408T G16647T A17337G C17339T C18555T G22992A G23401A A23403G C23635Y C23655T T27832G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_565815
 2020-08-26 2020-09-30
 Australia hCoV-19/Australia/VIC9972/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3164A T7540C C14408T G16647T A17337G C17339T C18555T G22992A G23401A A23403G C23655T T27832G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_566072
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/England/203580286/2020
 ATTAA1- C241T C683T C1514T C2113T C3037T C5100T G6127A C7051T C7303T C8964T G11083T C14408T A23403G G25314T GGG28881AAC C29296T G29744A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_568299
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998D2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10252T C13536T C14408T T21154G G21795T A23403G C23731T C28292A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568302
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998E37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T G2210A C3037T T3256C C5622T A6693R C11956Y G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568303
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568310
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998DB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G A6821R C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568312
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998D3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1919T C3037T C4002T G10097A C10252T C12641T C13536T C14408T T21154G G21795T A23403G C23731T C28292A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568318
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998DEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C11514T T14313C C14408T G15652T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568319
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998D0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G T10825A C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568329
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998DA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568330
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98FF03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C7732Y C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568335
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998DD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G28321T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568336
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98FF12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568337
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9983A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1469T C3037T A9409G T12017C T13380Y C14408T G22113T A23403G T23849C C25100M G26746T T27522C G28209C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568340
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998C97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568343
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998D1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568346
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998DFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C C835T A2869G C3037T G6352T C6445T C10868T T14313C C14408T G15652T G22468T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568347
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998D58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G G9802T C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568350
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998D85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G G27505K C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568351
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98FB5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G A2907G C3037T G6352T C6445T G8131T C10868T G11083T C14408T G15652T A17538T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568354
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9983B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568355
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G C25466A G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568360
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998C00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C11514T T14313C C14408T G15652T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568362
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9900EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568436
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/CAMC-9907BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T CG21304AA C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568453
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/CAMC-99093E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568454
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/CAMC-990FF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568461
 2020-08-26 2020-10-01
 United Kingdom hCoV-19/Scotland/CAMC-990AC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT994937
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994938
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994939
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994940
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994941
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994942
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994943
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994944
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994945
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994946
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994947
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994948
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994949
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994950
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994951
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994952
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994953
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994954
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994955
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994956
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994957
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994958
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994959
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994960
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994961
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994962
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994963
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994964
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994965
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994966
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994967
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994968
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994969
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994970
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994971
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994972
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994973
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994974
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994975
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994976
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994977
 2020-08-26 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_529231
 2020-08-27 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169F16/2020
 ATTAAAG1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C16394T C17104T G18028T A20268G TACATG21765- C22127T C22879A A23403G G23876A T24910C G25947T C26022G T26972C C27800A C29274T G29734C

EPI_ISL_529635
 2020-08-27 2020-09-10
 United Kingdom hCoV-19/England/BIRM-629C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29402T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529636
 2020-08-27 2020-09-10
 United Kingdom hCoV-19/England/BIRM-629E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T G3410T C7029T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529688
 2020-08-27 2020-09-10
 United Kingdom hCoV-19/Scotland/CVR3977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530278
 2020-08-27 2020-09-11
 Australia hCoV-19/Australia/QLD1024/2020/P1
 AT1- C241T A1163T C3037T T7540C C10209T C14408T G16647T C18555T G21666T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_530279
 2020-08-27 2020-09-11
 Australia hCoV-19/Australia/QLD1025/2020/P1
 ATTAAAGGTTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G21666T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_534441
 2020-08-27 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-997FEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C8606T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536686 MW035484
 2020-08-27 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7528T C14408T A21519G A23403G A24051G G25563T G27074T C28890T G29081T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536698 MW035496
 2020-08-27 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T C11674T A11911G C11956T C12025T C14408T T19839C A23403G C23707T C25100A GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536705 MW035503
 2020-08-27 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C2710T C3037T C3885T G7936T A10323G C13957T C14408T T15276A T21462A C21575T A23403G A24010G G25563T G28842T G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537150
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997FF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T A2464G C3037T G9802T T11938Y G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537154
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997F17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537161
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997EDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537164
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997F44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G T25202K C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537165
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997F53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C17999T C21637T A23403G T25202K A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537167
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997FDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T G5206T C6286T G9805T G13897A C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537168
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9980C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537171
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997EED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537175
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997F62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537176
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9980B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T G4298T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537177
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997F35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537179
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-99807D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537180
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-997F71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537182
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-9980AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T G3452A C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27012T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537184
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-99809B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C25000T T25202K C26060T A27455G GGG28881AAC C28893G G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537188
 2020-08-27 2020-09-16
 United Kingdom hCoV-19/England/QEUH-99805F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539454 LR882463
 2020-08-27 2020-09-18
 Switzerland 260161
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T T7001Y C13671Y C14408T C14805T C16049T G17278T AT20284TC G21255C C22227T A23403G C26801G A27510W A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539455 LR882453
 2020-08-27 2020-09-18
 Switzerland 260162
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1102Y C2416T C3037T A6912W G8371T C9430T C14408T A15477T C18395T G18498K C20178Y AGA20622TTT A23403G C23730T G25563T A26319G G26834K G28357C C28854T G29044A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539457 LR882477
 2020-08-27 2020-09-18
 Switzerland 260165
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1437T C1513T C3037T C6286T T6897Y C6924M A6953M T6996Y C14408T G21255C C22227T G22346K C22377T A23403G C26801G C28706T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539458 LR882478
 2020-08-27 2020-09-18
 Switzerland 260166
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T T6935Y T6959Y C13671Y C14408T C14805T G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T G28703C C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539461 LR882486
 2020-08-27 2020-09-18
 Switzerland 260170
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K T7035W G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539462 LR882476
 2020-08-27 2020-09-18
 Switzerland 260171
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A543M C842T T1359C C3037T C7765T G9190T C10702T G11083T C11109T C14408T G15243K C17690Y C18877T A23403G G24998K G25563T C25886T C27429T G28851C G29688K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539464 LR882485
 2020-08-27 2020-09-18
 Switzerland 260173
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A11782G C13994T C14408T T21570G C21575T A23403G T25473C C28253T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539465 LR882480
 2020-08-27 2020-09-18
 Switzerland 260174
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3144K T7767C C8047T G10058R A10069W T10076W G12988T C14408T C15180Y G15598A C17104T G18028T A20268G T21075W C22879A A23403G T24910C G25494T T26972C C27800M G29706T G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539467 LR882481
 2020-08-27 2020-09-18
 Switzerland 260176
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C G2177T T2949Y C3037T T3142K T3144K T3598Y T3769Y C6286T C14408T A16210W T20661C G21255C G21468T C22227T C22480T A23403G C26801G C28932T C29366Y C29386T G29645T A29865W TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539468 LR882472
 2020-08-27 2020-09-18
 Switzerland 260177
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1738T C3037T C3602Y C4543T G5629K T6935Y T7028Y T7035W G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539471 LR882473
 2020-08-27 2020-09-18
 Switzerland 260180
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T G1696T C3037T T3144Y G11083T C14408T G14829K A16210W C18252T A23403G C25797T C25803T C26313Y G28396R GGG28881AAC C29171Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539472 LR882484
 2020-08-27 2020-09-18
 Switzerland 260182
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T3144W T3726K C4543T T5322W T5519Y G5629T A6887M G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539473
 2020-08-27 2020-09-18
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-260184_999_H05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5950K G6080A T8041C G10265A C11758T C14408T A15972G C19718T A23403G G23593T T28759C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539474 LR882491
 2020-08-27 2020-09-18
 Switzerland 260191
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5950K G6080A T6918Y T8041C G10265A C11758T C14408T A15972G C19718T A23403G G23593T T28759C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539476 LR882489
 2020-08-27 2020-09-18
 Switzerland 260195
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1464A C3037T C3041Y T3144K G3403S T3532W A3680W A5536R T6904W T6996K T7026W T7767C C8047T G8179T A8374R C8376Y C8529Y T8560W C8655Y T9349Y T9427Y TT9475YY T9877Y T9941Y TT9955YY T9991Y T10000Y TT10012YY G10151K C13372Y C14408T C16667Y C17104T G17513R C18431Y G18816K T19242C G19636R A19722R A20268G G20931T C22866M C22879M C23111Y A23403G C23655Y T23960Y G24693R G24933K G25217K C25624T C27128Y T27618Y C27625Y C27741Y T27835Y G29151R C29545M G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539477 LR882492
 2020-08-27 2020-09-18
 Switzerland 260196
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1437T C1513T C3037T C6286T G6943K T6966Y T7035W C14408T T21075W G21255C C22227T G22346K C22377T A23403G C26801G C28706T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539478
 2020-08-27 2020-09-18
 Switzerland hCoV-19/Switzerland/SO-ETHZ-260190_1001_D08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1437T C1513T C3037T C6286T T6918Y C6982Y T7035W C14408T T21075W G21255C C22227T G22346K C22377T A23403G C26801G G28460S C28486Y C28706T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539480
 2020-08-27 2020-09-18
 Switzerland hCoV-19/Switzerland/VD-ETHZ-260192_1002_B02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T G6894K T7035W C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539481
 2020-08-27 2020-09-18
 Switzerland hCoV-19/Switzerland/VD-ETHZ-260195_1003_B12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C222T C241T T445C C3037T C6286T T6917W T6972K G11083S C14408T T20661C G21255C G21372K G21468T C22227T A23403G C26801G G28314K C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539482
 2020-08-27 2020-09-18
 Switzerland hCoV-19/Switzerland/VD-ETHZ-260196_1003_C11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T A424R A430R T445C A538R A563R A610R A618R A624R A642R C3037T T3095W T3144D A3754R T5322W C6286T T6933K C14408T A16210W T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_539880
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/203740645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- C241T C1059T C1376T C3037T T3161G G12067T C12084T C13335T C14408T A15626C A23403G G24368T G25563T G25650T G25775T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_539918
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998B30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28093T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539935
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F9E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T C12076T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27534C G28851T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539943
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998AF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T G25471T A27921R A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539949
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998B4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28093T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539953
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F47D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539972
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998B5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28093T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539975
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F49B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6196T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539980
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98FA99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6258T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539988
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T TAG11607WWK C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540013
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C6033T C14408T A23403G G25617T C28435T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540019
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F56B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540032
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1346A C3037T C8683T C9430T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540037
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998B12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540057
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998AE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C G5023T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540062
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F8EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540081
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F7B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540095
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F48C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540107
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F4AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A G29616T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540109
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FF7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28093T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540110
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G18002T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540118
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-998B6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28093T C28932T G29645T G29711K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540124
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F6E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C6033T C14408T A23403G G25617T C28435T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540125
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F589/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G16485K G19542T C19718T G20893T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540128
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F64A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T G21793S A23403G G26193R A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540356
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F6A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540368
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F46E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T A20010M G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540369
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F2BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T T2454C C3037T G3483T G10097A T10992C C11001T C14408T G20134T A23403G C23731T C25714T G28580T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540383
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F5E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T C12076T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27534C G28851T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540413
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F6B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C8606T C14408T T20661C A21174R G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540641
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-991FB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T C8752T G12988T C14408T G15598A C17104T G18028T A19736G A20268G A21137G TACATG21765- G21800T C22879A A23403G T24910C G25494T C25791T G26828A T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540642
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-991FFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540643
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-99200A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T C5339T C12809T C14408T A17376G G18703T A23403G C27213T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540645
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-992046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2534T C3037T C4540T C5339T C12809T C14408T A17376G G18703T A23403G C27213T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540646
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-992064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G159A C241T T950C C1190T G2174A C3037T C14408T T19363G A20268G A23403G C28854T T29536A C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540647
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-9920BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T G15652T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540649
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-992125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1580T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G C25466A G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540650
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-992152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G G24781T C28087T C28310T GGG28881AAC A29521T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540652
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-992170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C11620T C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540656
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-9921CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18568T C18877T C22444T A23403G G25563T C26735T G27852T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540658
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-9921E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540659
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-992213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540660
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-992222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540663
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-99225F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T G6341A ATT12627- C14120T C14408T C15540T G17019T C19884T A23403G C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540664
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-99227D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540667
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-9922B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1550A A2018G C3037T G3239A C6606T G7042T C9541T C9857T C14408T C15324T T17142A T17688C G21334T A23403G C25549T C27920T G28027T C28054T G28655A G28881A C29675T C29802T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540668
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-9922C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C11514T T14313C C14408T G15652T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540672
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-99232F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540673
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-99234D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T C16859T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540674
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-99236B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540676
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-9923B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540678
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-9923E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29648T G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540679
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-9923F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T GGG28881AAC G29648T G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540682
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-992477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T C5339T C12809T C14408T A17376G G18703T A23403G C27213T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540683
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-992486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T A23403G C24844A C26464T C26895T GGG28881AAC G29648T G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540685
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-9924A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C19185T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540686
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-99250B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28048T G28975T C29144T G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540687
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-99251A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T G4232T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540688
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-992529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G19254T C21575T A23403G C24023T GGG28881AAC C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540689
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/England/MILK-992538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C10798T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540775
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR3978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T568C C882T G1843T C2416T C3037T C6706T A7669G G8371T G11083T C14408T C16887T C17746T G19962T C22477T A23403G G25266T G25273A G25489T G25563T C26735T G28907T C29366T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540894
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/Wales/MILK-992019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28310A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540895
 2020-08-27 2020-09-21
 United Kingdom hCoV-19/Wales/MILK-992028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T G6344T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541215
 2020-08-27 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T G2441A C3037T C12068T A12841G C14408T C16616T C19560T A23403G G25563T C26885T C27603T C28153T C28887T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_541217
 2020-08-27 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1285/2020
 ATT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T A12622G C14408T A23403G G25563T C27213T C28087T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_547589
 2020-08-27 2020-09-24
 India hCoV-19/India/HR-IMT-CB29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G8548A C10790G C13957A C14408T C18877T T19299G C22444T A23403G G25471T G25563T C26079T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_547590
 2020-08-27 2020-09-24
 India hCoV-19/India/HR-IMT-CB44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G319A C3037T G8548A C10790G C13957A C14408T C18877T C22444T A23403G G25471T G25563T C26079T C26735T C28854T CACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29739-

EPI_ISL_547591
 2020-08-27 2020-09-24
 India hCoV-19/India/HR-IMT-CB45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C66A C241T A929G C2232T C3037T C5884T C14408T A23403G C26060T C27881T C28256A GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_547592
 2020-08-27 2020-09-24
 India hCoV-19/India/HR-IMT-CB130/2020
 ATT1- T312G C3037T G3431T T5653C C11259T C12068A C14408T C18877T A21630G A23403G G25563T G25855T C25936T C26060T C26735T A28416G C28854T CACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29739-

EPI_ISL_547593
 2020-08-27 2020-09-24
 India hCoV-19/India/HR-IMT-CB193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C3037T C14408T G18816T C18877T C22444T G22918T A23403G AG24389CC G25563T C26735T C28854T G28942A G29254A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_548046
 2020-08-27 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548047
 2020-08-27 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548049
 2020-08-27 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548050
 2020-08-27 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549525
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-996349/2020
 C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_549528
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9963B2/2020
 C241T C3037T C4084T C4230T C12171T C14408T G20274T A23403G GGG28881AAC C29774T

EPI_ISL_549529
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9963C1/2020
 G204T C241T G252T T445C C3037T C6286T C14408T C15480T C20703T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29543T G29645T AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_549530
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9963D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549531
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9963FE/2020
 C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G G25987T T26609C C26801G A27609C C28932T G29645T

EPI_ISL_550262
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C9541T C14408T A18798C G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550299
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/Scotland/MILK-99A309/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2710T C3037T G4105T C4391A C11124T C14408T G14792T C15848T C16928T C17074Y G19254T T19893C C23277T A23403G C25658T C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550305
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A3FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T G13920A C14408T C14786T C17898T G21123T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551840
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990C35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T A20599C G21255C C22227T A23403G C26801G C27944T G28371T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551841
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/Wales/CAMC-991223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T C28961T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551843
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990EB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4540T C5339T A10874G C12809T C14408T A17376G G18703T G19999T A23403G C27213T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551847
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990B1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T T9151C C9430T C9693T C13887T C14408T G16853T G21796T C23248T A23403G G25429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551853
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9911DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11447A C14408T C21648T A23403G G25055T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551855
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990DBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551856
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990A77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T C19586Y T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551858
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990B29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551860
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990A4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551861
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990C17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29543K G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551865
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990CDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G440T C3037T C14408T C17676T A23403G G25617T GGG28881AAC C29409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551872
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9910A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C11620T C13536T C14408T G19732T G21204K A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551876
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-99086E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T T8743C C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G16377T G16647A G21800T A23403G G25563T G27632T C27804T C28830A G29402T C29722T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551879
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9910B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T G13714A C14408T G14580T G21123T G21255C C22227T A23403G C26801G C27944T G28451C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551881
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-99126F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T T16671A G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551883
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990DF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7037T G9130T C14408T T20973A A23403G T27319C G28487A C28868T GGG28881AAC G29212T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551887
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990D05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551889
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-99085F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2091T C3037T C3117T A9419G C14408T T19839C A23403G C23638T G27798T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551890
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990C26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3411T G8371T C9430T A10506G C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551891
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T C18377T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551893
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990C08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551894
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G21641T C22432T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551898
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990D14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T C7817T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551899
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990804/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G3328T G4006T C5170T C6286T G11132T C14408T G18105C G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551903
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990840/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T G6404T G10265A -11075TTT G11083T C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29348T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551906
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990AE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T G11083T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C19524T G22992A A23403G G25563T C25710T G26428T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551907
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1113T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27847T G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551908
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990F1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C26882Y A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551911
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-99100B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551912
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990D7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C958T C3037T G4399T C5144T C6230T C6500T C11758T C14408T G18210T A20268G A23403G T24076C G25217T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551913
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990D8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551915
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990EE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T C7979T G9526T C10369T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551918
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990BFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T C26645T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551919
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9909E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C A22206T C22227T A23403G G25049T G25062T T25202K C26801G A28271G C28657T C28932T G28960T C29366T G29402T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551925
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T T9151C C9430T C9693T C13887T C14408T G16853T G21796T C23248T A23403G G25429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551926
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T G252T T445C C3037T C6286T C14408T C15480T C20703T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29543T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551931
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-99292D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551938
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-993142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551940
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1063T C3037T C6286T T9167C C11396T C14408T G20006T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551942
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992A1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T G19816T A23403G A25067W G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551943
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-991F0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C17676T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551945
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9937C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T G22201K C22388T A23403G C26060T G28027K GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551946
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9927BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T C18377T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551947
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-991F1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T G20038T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551952
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9931E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T G6341A ATT12627- C14120T C14408T C15540T G17019T C19884T A23403G C23525T C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551956
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9937AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C1426T G1470A C3037T A3327G C3393T A3569G C3695T A6211G A8659G A9848G C9943T C13199A C14408T C19488T A23403G A23746T C26527T G28162T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551960
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992A39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G17658T G19542T C19718T C22388T A23403G G25538T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551965
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551972
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-991E98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3903T T7767C C8047T G12988T C14408T G15598A C17104T G18028T C19884T A20268G TACATG21765- C22879A A23403G T24910C T26972C C27393T C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551979
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T G21793K C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551980
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9916CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1722T C2509T C3037T C6286T C6538T C14408T G21255C C22227T G22468T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551982
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9929E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551984
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9928F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551990
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9916BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C14898T A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551992
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-99328B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2110T C3037T C6286T C8090T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552002
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9928C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552017
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9916EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552019
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9926AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1550A C3037T G3239A C6606T G7042T C9541T C9857T C14408T C15324T T17142A T17688C C20790Y G21334T A23403G C25549T C27920T G28027T C28054T G28655A G28881A C29675T C29802T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552020
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-99318E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T T14313C C14408T G15652T G22894T A23403G G23438T C25006T G25145C GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552021
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5239T G5542A G10318A G11083T C11455T C11479T T14100C C14408T G22801T A23403G T24217C G25019A G25261T G25644T G26842A G27798T GGG28881AAC G29511T G29543T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552023
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4510K C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552026
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9937F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A A2512R C3037T A3327G A3569G C3695T A6211G C7231Y A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552028
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9927F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552032
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552036
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552041
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9925ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T T17328G G20125A C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552050
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9928E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T A11144M C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552051
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-99141E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G19292T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552056
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9928A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C T3766C T4346G C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552057
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C G2305K A2869G C3037T G6352T C6445T C10868T C11514T T14313C C14408T G15652T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552060
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-99290F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552063
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C16394T T16456Y C17104T G18028T A20268G TACATG21765- C22127T C22879A A23403G G23876A T24910C G25947T T26972C C27800A C29274T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552066
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9928D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3239T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552068
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9937E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G18782T G21255C C22227T G22346T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552069
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C23538T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552076
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9927AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T C18377T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552077
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9929A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T G6341A ATT12627- C14120T C14408T C15540T G17019T C19884T A23403G C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552080
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-99317F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C9598T C10207T C14408T G21255C C21812T C22227T C23275T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552082
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C583T C3037T C5700A C14408T G22487C C23271T A23403G C23525T C25791T G27948T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552084
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9931F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T G6341A ATT12627- C14120T C14408T C15540T G17019T C19884T A23403G C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552086
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-991EE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552087
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T T26561C GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552096
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C23538T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552101
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-991EB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C4686T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552102
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992A0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27577T G28237A C28706T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552109
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9930FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1550A C3037T G3239A C6606T G7042T C8251T C9541T C9857T C14408T C15324T T17142A T17688C G21334T A23403G C25549T C27920T G28027T C28054T G28655A G28881A C29675T C29802T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552110
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9926DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G C23996Y A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552111
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9936E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T C22716A A23403G C26801G C27944T C28932T C29555T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552113
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-99279C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C1121T A2895G C3037T C6395T C11020T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552114
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G T13339C C14408T G20275A C20402T T21570G C21575T A23403G T25473C C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552121
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-99319D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552131
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T C18377T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552132
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9931CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T T21673Y C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552134
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T T26561C GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552135
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-99324F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552142
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992A84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1567A G1957T C3037T T7767C C8047T C14408T C17104T A20268G C22879A A23403G G25269C C27800A C29445T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552145
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-992705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1263T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- G21793T C22879A A23403G T24910C G25494T T26972C C27800A C29358T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552147
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9931AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T A15779G C20283T C21855T A23403G A25505G G25906C G25996T C27002T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552152
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9932F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552156
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992A93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552161
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G T23672Y G25563T C25710T G25726T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552162
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-992AB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C19374T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552164
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-992820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552172
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9928B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552174
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-991E7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G A21137G TACATG21765- G21800T C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552176
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9926CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552177
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-992A75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552183
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9929F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552185
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G714R C3037T T9115A G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552186
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-9929C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11875G A12075G C14408T T14441C A16395T C18877T G20937T A21137G A23403G G24348T G25563T C26735T C27804T C28866T G29474T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552222
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993C32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552228
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-991CF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T G6337T C7303T C7564T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T C16293T C16877T G21123T G21800T A23403G G25563T T27622C G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552229
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993B71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552234
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993C14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T T26561C GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552236
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-991D8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552244
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993B9F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552255
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-991CBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552272
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993BF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C5339T C5654T C14408T A20268G C21516T A23403G C25731T C27741T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552273
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993AED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7267T C9120T C14408T C18032T C20233T A23403G G24926T A27674T GGG28881AAC A29350G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552279
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993DA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T G6404T G10265A -11075TTT G11083T C14408T C15720T A15972G C19718T A23403G G26700T T28759C GGG28881AAC G29348T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552303
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993C23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3743T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25409C G25563T A26319G G28476C C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552318
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993DB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29706T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552327
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-991CAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T G21624K C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552338
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993C6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C11620T C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552348
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993CBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C21911M G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552355
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993B62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552361
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993BEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T C17678T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552368
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-991D22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C280T C3037T T7767C C8047T C8752T G12988T C14408T G15598A C17104T G18028T A19736G A20268G A21137G TACATG21765- G21800T C22879A A23403G T24910C G25494T C25791T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552383
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993D5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552387
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993AB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7267T C9120T C14408T C18032T C20233T A23403G G24926T A27674T GGG28881AAC A29350G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552394
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993CC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552398
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-991C9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T C19032T A20268G TACATG21765- C22879A A23403G T24910C C26934A T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552400
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-991CCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552406
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993ADE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7267T C9120T C14408T C18032T C20233T A23403G G24926T A27674T GGG28881AAC A29350G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552412
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993D99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T C26768Y GGG28881AAC G28960K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552427
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-991D9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T G252T T445C C3037T C6286T G11083T C14408T C15480T C20703T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29543T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552428
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993A92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552430
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/MILK-993D4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7165T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559781
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C04C/2020
 C241T C1101T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C21639T A23403G C23731T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_559784
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C10D/2020
 C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC

EPI_ISL_559785
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C149/2020
 C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G GGG28881AAC TACGATCGAGTGTACAGTGAACAA29748-

EPI_ISL_559786
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C167/2020
 C241T C1263T C3037T T9964C C10755T C14408T A17713G C18029T A23403G G25459T G25793T GGG28881AAC A29899M

EPI_ISL_559787
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C1B2/2020
 C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C

EPI_ISL_559788
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C1C1/2020
 C241T T445C C3037T C6286T C7051T G7693A C14408T G21255C A22206T C22227T T22426C A23403G G25049T G25062T C26801G G27561T C28657T C28932T G28960T C29366T G29645T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29873-

EPI_ISL_559789
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C1FE/2020
 C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T

EPI_ISL_559790
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C282/2020
 C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25127A G25494T T26972C C27800A C29358T G29734C

EPI_ISL_559791
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C2A0/2020
 C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C22432T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29425T

EPI_ISL_559793
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C325/2020
 C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T

EPI_ISL_559794
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C361/2020
 C241T G1210T C3037T G9802T G12067T C14408T A21137G A23403G GGG28881AAC

EPI_ISL_559795
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C38F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAATAACT1- C241T C3037T T7767C C8047T A8380R G12988T C14408T G15598A C17104T G18028T A20268G A21137G TACATG21765- G21786T G21800T C22879A A23403G T24910C GGTGAAATCAAGGATGCTACTCCTTCAGATTTTGTTCGCGCTACTGCAACGATACCGATACAAGCCTCACTCCCTTTCGGATGGCTTATTGTT25444- T26972C C27800A G29734C GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_559796
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C39E/2020
 C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T A29900G

EPI_ISL_559797
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C3AD/2020
 C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T AA29902-

EPI_ISL_559798
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C3BC/2020
 C241T TGGTCATGTTATGGT508- G1210T C3037T G9802T G12067T C14408T C15960T A21137G A23403G GGG28881AAC

EPI_ISL_560003
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-99C370/2020
 C241T C3037T C4655T G5305A A5958G ACA12780- C14408T C16332T C21302T CG21304AA A23403G GGGG28881AACT

EPI_ISL_560306
 2020-08-27 2020-09-28
 United Kingdom hCoV-19/Wales/QEUH-99C264/2020
 G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G A27472G C27944T C28932T G29645T

EPI_ISL_560324
 2020-08-27 2020-09-28
 India hCoV-19/India/HR-IMT-CB117/2020
 ATTA1- C241T C643T C3037T A8081C C14408T G15543R C18877T C22444T G22992A A23403G G24368C T25556G G25563T C26681T C26735T T28091W A28095R C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_560795
 2020-08-27 2020-09-29
 United States hCoV-19/USA/MN-MDH-1708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G210T C241T C1288T C3037T C11050T C13426T C14408T C14937T G21893A C22783T A23403G C24904T T27597C GGG28881AAC A29056G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_560796
 2020-08-27 2020-09-29
 United States hCoV-19/USA/MN-MDH-1709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCA1- G210T C241T C1288T C3037T C11050T C13426T C14408T C14937T G21893A C22783T A23403G C24904T T27597C GGG28881AAC A29056G TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_561343
 2020-08-27 2020-09-30
 India hCoV-19/India/HR-IMT-CB126/2020
 ATTAAAG1- T1330C C3037T T3532C C14408T C19983T T20799C C21780T A23403G T27850C AG28877TC GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_562645
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC11562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T AAGTCATTT686- A1163T C3037T T7540C C12043Y C13432Y C14408T G16647T C18555T T21738C G22992A G23401A A23403G G24257T G28027T GGG28881AAC G29706C ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562646
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC11563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T T21738C G22992A G23401A A23403G G24257T G28027T GGG28881AAC G29706C TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_562731
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC10111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G26842A GGG28881AAC GC29773- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562796
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC10120/2020
 ATTAAAGGTTT1- C241T A1163T C3037T T3043C C5549Y T7540C C9996T C12846Y C14408T G16647T C18326Y C18555T C18814T G22992A G23401A A23403G G28041A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562798
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC10122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562800
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC10127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T G5489A T7540C T11192C C12763T C14408T C14576Y C16247T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562814
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC10170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T C7471T T7540C C14408T G16647T A17337G G17721T C18555T G22992A C23191T G23401A A23403G C25521T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562815
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC10174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C11884M C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562817
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC10182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T A1163T C3037T G4105T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C28253Y GGG28881AAC G29266T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_562818
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC10187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T9013C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562824
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC10212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T A22405D G22992A G23401A A23403G A27024C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562831
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC10227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C A9744G C14408T G16647T A17337G C18129T C18555T G22992A G23401A A23403G GGG28881AAC C29836Y CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_562946
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC10525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C12823T C13115Y A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T C26681Y T27785C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563304
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC11224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C2488T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G T27957C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563305
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC11228/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G15594T C16391T G16647T C18555T A19883R G22992A G23401A A23403G C25714T A26253C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563416
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC11565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G45K C241T A1163T C3037T T7540C C9996T C10279T C14408T C14599T G16647T C18555T G22927T G22992A G23401A A23403G A28416T GGG28881AAC C29585T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563859
 2020-08-27 2020-09-30
 Australia hCoV-19/Australia/VIC13869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_566069
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/England/203580245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1419T C3037T C4158T A4469G C8318A C8637T C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T T29479A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_566070
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/England/203580247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1419T C3037T C4158T A4469G C8318A C8637T C10615T G11083K C14408T G18859T T20865Y G21624T A23403G C26571A GGG28881AAC C29077T T29479A GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_566071
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/England/203580248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1419T C3037T C4158T A4469G C8318A C8637T C10615T G11083K C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T T29479A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_568294
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F9BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568297
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98FE33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568298
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F6D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568304
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98FE9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A C29249A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568305
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998ACA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T C21614T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568307
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-990224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C186T C241T C3037T C5055T C6720T G10396T G11851T C14408T C14786T G18985T A23403G C24382T G24812T G24998K C26895T GGG28881AAC C29642T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568308
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98FA7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568309
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998B8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1589T C3037T C4543T G5629T G9526T G11083T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C19524T G22992A A23403G G25563T C25710T G26428T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568313
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998B7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T G17561A C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568314
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98FD27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C13176T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568316
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F60E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T G6337T C7303T C7564T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T C16293T C16877T G21123T G21800T A23403G G25563T T27622C G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568322
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568323
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-99034F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346Y T772C A2869G C3037T G6352T C6445T C10868T C11514T T14313C C14408T G15652T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568326
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98FB2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T G14202T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568328
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98FCB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426K A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568333
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-990215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T G9314T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568334
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568338
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F6C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T C14408T A20268G A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568339
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98FA8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15935Y G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568341
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G C23525Y C27654Y A28169G GGG28881AAC G29402K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568342
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98FD18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C3717T C6286T C13176T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568345
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F9D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C16952Y G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568348
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998B03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568349
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568357
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F96F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568358
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C4084T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568359
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568385
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/CAMC-9914C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568388
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-997EFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568389
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-998110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T G11083T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C19524T G22992A A23403G G25563T C25710T G26428T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568391
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-997F80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G T25202K C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568394
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/England/QEUH-998198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A G10642T C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568439
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F5F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568446
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568449
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F38F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568457
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F57A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T T2083G C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568458
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/CAMC-990FE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568464
 2020-08-27 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568518
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T G1274T C3037T C4002T A8976G G10097A C13536T C14408T C16733T A23403G C23731T G26062T C26681T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_568519
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T G10265A C14408T G20487T A23403G G23593C C25931T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_568520
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C4002T G10097A G10870T C13536T C14408T A22330T T22828C A23403G C23731T A25125C C26131T GGG28881AAC C29708T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_568521
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C4002T G10097A G10870T C13536T C14408T A22330T T22828C A23403G C23731T A25125C C25658T GGG28881AAC C29708T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_568522
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C4002T G6513T G10097A C10252T A10323G C13536T C14408T G20756A G22706T A23403G C23604G C23731T C26313T GGG28881AAC G29179T C29445T TCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29729-

EPI_ISL_568528
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0132/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A798G C3037T C4002T C7644T C9810T C10029T G10097A C11235T C13536T C14408T C14877T A16474G T22016C A23403G C23731T G25249T C25613T G25947C GGG28881AAC C29530T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_568529
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C878T C3037T C4002T G10097A C13536T C14265T C14408T A21131G A23403G C23731T A26059G C27213T C27513T GGG28881AAC AAAAAAAAAAAAAAAAA29887-

EPI_ISL_568531
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T A3786G C4002T G10097A C12242T C13536T C14408T A17409G C18692T A23403G C23731T G24794T A25590T C25919T A26693G C26801T A28356G GGG28881AAC GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_568532
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C186T C241T C3037T C4002T C9163T G10097A C13536T C14408T A23403G C23731T GGG28881AAC A29337G C29670T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_568534
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C5506T C9344T C10456T C14408T C15222T G16968A C18162T T19839C T22074C A23403G GGG28881AAC AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_568535
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0141/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1150T C3037T C4002T A8308G G10097A C12854T C13536T C14408T C18029T A19464C G20464A A21131G C21575T C21707T A23403G C23731T C23929T GGG28881AAC GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_568537
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1420T C3037T C4002T C10015T C10029T G10097A C13536T C14408T C14877T A23403G C23731T C26710T C27972T GGG28881AAC C29530T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_568538
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1420T C3037T C4002T C10015T C10029T G10097A C13536T C14408T C14877T A23403G C23731T C26710T C27972T GGG28881AAC C29530T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_568539
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C274T C3037T C10818T C14408T C16332T G17427T A23403G G28326T GGG28881AAC G28899T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_568543
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C3037T G10265A C14408T G20487T A23403G C25931T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_568544
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C203T C241T C3037T C3317T C11665T C14408T T19839C A23403G A23432C A25060G G28134T GGG28881AAC C29774T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_568552
 2020-08-27 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T T2402G C3037T C4002T G10097A C10741T C13536T C14408T A23403G C23731T G24794T C28695T GGG28881AAC G29777T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

MW023476
 2020-08-27 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T G2441A C3037T C12068T A12841G C14408T C16616T C19560T A23403G G25563T C26885T C27603T C28153T C28887T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

MW023478
 2020-08-27 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1285/2020
 ATT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T A12622G C14408T A23403G G25563T C27213T C28087T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_529229
 2020-08-28 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169EEC/2020
 ATTAAAGGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T G18756T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C

EPI_ISL_529637
 2020-08-28 2020-09-10
 United Kingdom hCoV-19/England/BIRM-62A3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C11758T C12484T C14408T C18877T C22444T A23403G G25563T C26735T C28854T A29084G C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529713
 2020-08-28 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169F52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_530283
 2020-08-28 2020-09-11
 Australia hCoV-19/Australia/QLD1031/2020/P1
 ATTAAAGGTTTATACC1- C241T A1163T C3037T T7540C C10209T C14408T G16647T C18555T G21666T G22992A G23401A A23403G GGG28881AAC AA29902-

EPI_ISL_535185
 2020-08-28 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-169FE9/2020
 ATTAAAGGTTTA1- C241T G2407T C3037T C3602T G4442T C6525T C6941T G11761T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_536417
 2020-08-28 2020-09-16
 Singapore hCoV-19/Singapore/876/2020
 ATTAAAGGTT1- C241T C3037T G8726T C8917T G9389A C14408T G18922A C23202Y A23403G GGG28881AAC C29144T AAAAAAAAAAAA29892-

EPI_ISL_536418
 2020-08-28 2020-09-16
 Singapore hCoV-19/Singapore/877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C1912T C2695T C6310A C6312A G11083T C13730T G17427T C19524T G20679T C23185T C23557Y C23929T G26152A A27663G G28079T C28311T AAAAAAAAAAAA29892-

EPI_ISL_536443
 2020-08-28 2020-09-16
 Singapore hCoV-19/Singapore/902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1514T C2189T C3037T C6195T C7267T C8917T G9389A C14408T G23236T A23403G T27901G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_539577
 2020-08-28 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T C4002T G5950T G8548A G10097A C10376T C13536T C14408T G19732T G20931T A23403G C23731T T25510C C28512A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539578
 2020-08-28 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T T20273C C20759T C21727T A23403G GGG28881AAC CTCCTGCTAGAATGG28890- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539579
 2020-08-28 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T T20273C C20759T C21727T A23403G GGG28881AAC CTCCTGCTAGAATGG28890- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539580
 2020-08-28 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T T20273C C20759T C21727T A23403G GGG28881AAC CTCCTGCTAGAATGG28890- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539581
 2020-08-28 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T T20273C C20759T C21727T A23403G GGG28881AAC CTCCTGCTAGAATGG28890- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539582
 2020-08-28 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T T20273C C20759T C21727T A23403G GGG28881AAC CTCCTGCTAGAATGG28890- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539583
 2020-08-28 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T T20273C C20759T C21727T G23162S A23403G GGG28881AAC CTCCTGCTAGAATGG28890- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539584
 2020-08-28 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T T20273C C20759T C21727T A23403G GGG28881AAC CTCCTGCTAGAATGG28890- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539585
 2020-08-28 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T T20273C C20759T G21316T C21727T A23403G GGG28881AAC CTCCTGCTAGAATGG28890- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539587
 2020-08-28 2020-09-19
 Germany hCoV-19/Germany/NW-HHU-110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T C16616T C18788T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539928
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98FB4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C8606T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539991
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98FAC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2299T C2706T C3037T C4084T C14408T A20268G A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540044
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F6FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G24193T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540345
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EE34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540347
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EFB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540350
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EF7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540353
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EF9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540354
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EEAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6196T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540355
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F52F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540361
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EEBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C2094T C3037T C6286T C9693Y G12070T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28093T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540365
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T G1820A A2576T C3037T C5175T C6401T C14408T A23403G C23683Y C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540372
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98EECB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540373
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EFF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A994G C3037T G4105T C4391A C11124T C13792T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540377
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A5648C C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540381
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F7CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540382
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98EEE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T A11258G C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540384
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EE52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204C C241T C1288T C3037T T3163C C4345T C4763T G6358T C9836T C12053T C14408T G22468T A23403G T25150C T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540386
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078Y C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540393
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EEF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T G1186R T2992C C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G G24794K C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540394
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EE8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540395
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EF6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540397
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T G27621T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540399
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EF13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540404
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EF22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C6033T C14408T A23403G G25617T C28435T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540410
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EE16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540411
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EFAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540416
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98EF04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T T2992C C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540719
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/SHEF-C0B65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540760
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/England/SHEF-CF243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T C8655T C14408T C21637T C22550T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540777
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR3980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540778
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR3981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540780
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR3983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T C14408T A20268G A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540836
 2020-08-28 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541219
 2020-08-28 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5392T C9214T C9967T C12406T C14408T G15906T C18555T A23403G G25563T C28892T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_541221
 2020-08-28 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1289/2020
 ATTAAAGGTTT1- C241T C1059T C1670T C3037T C5392T C9967T C12406T C14408T G15906T C18555T A23403G G25563T C28892T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_541225
 2020-08-28 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1293/2020
 C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_541226
 2020-08-28 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1294/2020
 ATTAAA1- C241T C1059T G1298A C3037T G12694A C14408T C17639T A18529G A20742T C21637T A23403G G25563T C27752T G29628T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_541412 LR882113
 2020-08-28 2020-09-22
 Switzerland 270165
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T G9130T C11563Y A13039R C14408T C16111T G19009K T22726Y A23403G A24003C G25186K T27319C G28487A C28868T GGG28881AAC G29706T G29810T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541436 LR882093
 2020-08-28 2020-09-22
 Switzerland 270136
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K C5694Y C6040Y G9526T C11497T C13255Y G13993T C14408T G15766T A16889G G17019T C18877T G22992A G23126K A23403G G25088K G25563T C25710T C26735T T26876C G28975C G29399A G29427A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541437 LR882108
 2020-08-28 2020-09-22
 Switzerland 270157
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2086A C3037T T7305K C10702T G11634K C11653T C13517T C14408T C16293T G17334A T17863Y G18040T A19239G A23403G G25906K C28810T GGG28881AAC C29077T G29254A G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541438 LR882109
 2020-08-28 2020-09-22
 Switzerland 270163
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G G25785T C26801G A27831R C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541450 LR882101
 2020-08-28 2020-09-22
 Switzerland 270134
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T G9130T G13571K C14408T C16111T A23403G C23536T G25500A T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541451 LR882106
 2020-08-28 2020-09-22
 Switzerland 270140
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G598T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T C19032T A20268G C22879A A23403G T24910C C26934A T26972C C27800M G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541452
 2020-08-28 2020-09-22
 Switzerland hCoV-19/Switzerland/BL-ETHZ-270149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T C6843Y G9130T T10909Y A13581W C14408T C16111T A16210W A18798R C21658M A23403G C23536T G25500A T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541453
 2020-08-28 2020-09-22
 Switzerland hCoV-19/Switzerland/BL-ETHZ-270150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3738T C6843Y G9130T C14408T C16111T A18798R A23403G C23536T G25500A T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541454 LR882111
 2020-08-28 2020-09-22
 Switzerland 270153
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A603R C2485T C3037T G3259T G7146K TC7168YY G7178R T7274K A7285R T7767C C8047T C12880Y G12988T C14408T G15598A A16210W A16233W C16247Y C17104T G18028T G19398T A20268G G21770V G21800T C22879A A23403G T24910C G25494T T26972C C27800A A27865M T28002W G28044K A28081W G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541455 LR882110
 2020-08-28 2020-09-22
 Switzerland 270159
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C5055T C14322T C14408T C15951T A17199T C17550T C19718T G23162A A23403G C25916Y G28396K GGG28881AAC T29461G G29751A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541456 LR882112
 2020-08-28 2020-09-22
 Switzerland 270160
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C455M C475Y A489M A518W T531Y C3037T C5055T C7254Y C14322T C14408T C15951T A16210W T16213Y A17199T C17550T C19718T C21478M AA21487RM A22904W G23162A A23403G C25916Y G28396K GGG28881AAC T29461G G29751A TG29785YK TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541464 LR882102
 2020-08-28 2020-09-22
 Switzerland 270137
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629T T7136Y G9526T T10076W C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541496 LR882116
 2020-08-28 2020-09-22
 Switzerland 270169
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T C5284Y C5730T G8548A G10097R C13536T C14408T C18395T A23403G C23731T C27509T C27684T T27693W A28182W GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541500 LR882129
 2020-08-28 2020-09-22
 Switzerland 270177
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G94K C222T C241T T445C C3037T G3893A C6286T C10778S C10790M C14408T T20661C G21255C G21468T G21724K C22227T A23403G C26801G C28932T C29366Y C29386T G29645T A29694W TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541524
 2020-08-28 2020-09-22
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-270142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T T4337K C5284Y G5950K G10097R C11752T C13536T C14408T G19732T G20931T A23403G C23731T CAG28869AGA GGG28881AAC G29692K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541525
 2020-08-28 2020-09-22
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-270143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C904T C3037T C8683T C14408T G15406T G20580K C21637T A23403G A24292R A28169R GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541526
 2020-08-28 2020-09-22
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-270144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5950K G6080A T8041C G10265A C11758T C14408T A15972G C19718T A23403G G23593T T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541527
 2020-08-28 2020-09-22
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-270146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C527M T628W T631Y C3037T C6286T C7299Y T7305K C13671T C14408T C14805T A16210W G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541528
 2020-08-28 2020-09-22
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-270147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671Y C14408T C14805T G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T C28290Y C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541718
 2020-08-28 2020-09-23
 India hCoV-19/India/MH-NIV-183948/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A G11083T G13617T T14145C C14408T A23403G C27635T C28153T GGG28881AAC G28899C A29491G G29690T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_547741
 2020-08-28 2020-09-24
 United States hCoV-19/USA/MN-GMF-17485/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G862T C1059T C3037T C4686T G8314A A10323G G11083T C14408T T15276A G17658T A23403G G25563T G28842T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547742
 2020-08-28 2020-09-24
 United States hCoV-19/USA/MN-GMF-17505/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T G688T A696C C3037T G3871T T3931C C6285T T10816C C14016T C14408T A15609G C19524T C20429T A23403G C28977T G28979T C29733T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547743
 2020-08-28 2020-09-24
 United States hCoV-19/USA/WI-GMF-17507/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T G6865T A9058G C14408T C18115T C18486T A20268G C21575T T22162C A23403G C28854T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547744
 2020-08-28 2020-09-24
 United States hCoV-19/USA/WI-GMF-17526/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1191T G2035T C3037T G7743T G11417T C11956T C12025T C14408T A17207G T19839C A23403G C23707T C27649T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547747
 2020-08-28 2020-09-24
 United States hCoV-19/USA/WI-GMF-17647/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T G2089A C3037T C14408T C15324T C16260T C21575T C21622T A23403G G25563T C28821A AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548048
 2020-08-28 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29779-

EPI_ISL_548110
 2020-08-28 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3267T C7851T C8683T G11291T C14408T C18877T C21034T C22444T T22882G A23403G G25563T G26173T C26735T G28183T T28277C G28690T C28854T T29652C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548111
 2020-08-28 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C4754T C5173T G5425T C14408T G15906T G16795T C18877T C22444T A23403G G25563T C25904T G26217T C26447T C26735T C28854T C29679T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549339
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-996358/2020
 C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T G27065T GGG28881AAC AAAAAAAAAA29894-

EPI_ISL_549340
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-996473/2020
 C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC ACAAAAAA29869- AA29899MM

EPI_ISL_549345
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99632B/2020
 G45T C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29706T G29734C AAAAAAAAAAAAAAAA29888-

EPI_ISL_549346
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99672F/2020
 C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T T17556C G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_549523
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9962B5/2020
 ATTAAAGGTTTA1- C241T C3037T G3323T C5183T C9891T C10369T C13426T C14408T G18674A A23403G C26994T A28860G GGG28881AAC A29869T AAAAAAAAAAA29893-

EPI_ISL_549524
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9962F1/2020
 C241T C3037T C4543T G5629T G9526T G11083T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T26879C G28975C G29399A G29427A

EPI_ISL_549526
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-996367/2020
 C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G C27741T GGG28881AAC

EPI_ISL_549527
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9963A3/2020
 C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T A29887R AA29889SM AA29893RR AAAAAAA29897-

EPI_ISL_549532
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-996428/2020
 C241T T445C A1987G C3037T C6037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T A29890T A29898C AA29902-

EPI_ISL_549533
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-996482/2020
 C241T C3037T C3602T C6941T C14408T C15324T A16044T G16564T C21855T C22482T A23403G G24770A A25505G G25906C G25996T C28651T C28869T

EPI_ISL_549534
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9966B9/2020
 C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T

EPI_ISL_549535
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9966D7/2020
 C203T C241T C1170T C1185T C1450T C3037T C4002T G10097A C13536T C14408T C15738T G23236T A23403G C23731T G25720T G26065T GGG28881AAC AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_549539
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9979CE/2020
 G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28093T C28932T G29645T

EPI_ISL_549540
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-997A61/2020
 C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T

EPI_ISL_549541
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-997A70/2020
 C241T C337T C3037T G3323T C5183T C9891T C10369T C14408T G18674A C21575T A23403G C26907T A28860G GGG28881AAC A29890G A29894G AAA29901-

EPI_ISL_549542
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-997A8F/2020
 C241T C337T C3037T G3323T C5183T C9891T C10369T C14408T G18674A C21575T A23403G C26907T A28860G GGG28881AAC

EPI_ISL_549543
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-997BAA/2020
 C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC A29887D

EPI_ISL_549544
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-997BB9/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29017A G29227T C29466T A29771G AAAAAAAA29896-

EPI_ISL_549545
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-997C01/2020
 C241T C337T C3037T G3323T C5183T C9891T C10369T C14408T G18674A C21575T A23403G C26907T A28860G GGG28881AAC

EPI_ISL_549546
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-997C10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- A68M C241T C337T C3037T G3323T C5183T C7945T C9891T C10369T C14408T G18674A C21575T A23403G C26907T A28860G GGG28881AAC AAAAAAAA29896-

EPI_ISL_550326
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550346
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A8FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C5221T T7767C C8047T G8179T C13372T C14408T C17104T C17555T G18186T T19242C A20268G C22879A A23403G C23929T C24579T G24757T C25624T C26198T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550376
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C20759Y C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550383
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A61F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550816
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA56A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550905
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550943
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA55B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550962
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAB3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551838
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990E3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551863
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551867
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9908AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T G6337T C7303T C7564T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T C16293T C16877T G21123T G21800T A23403G G25563T T27622C G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551875
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/Northern Ireland/CAMC-990E6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G374A C3037T G3242A G6446T G8120C C14408T C14805T C15738T T19839C C21646T A23403G A24205T G28083T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551886
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990F78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4154T C4543T G5629T G9526T C11008T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551895
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T C8326T T10453C C11195T C14408T C15960T G16068T T16993C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551900
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990F2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T C20823T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551916
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-990E99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551932
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-99152A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C11620T C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551967
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C13035T C14408T G14792T C15848T C18788T G19254T T19893C A21137G G22335T A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552001
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9915FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T G21255C C22227T A23403G T25248C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552008
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T A11399G C14408T G15406T C21637T A23403G C23757T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552059
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-992ADF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C96T C241T C1419T G2281A C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A C28528T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552091
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T383C C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552151
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552166
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552170
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-99151B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T G21295T C21855T A23403G G25314T A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552180
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9914E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552194
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-991DC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9430Y C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552290
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-991DE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053K C4002Y C4073Y G5950K T7767Y C8047Y G10097R C11620Y G12988K C13536Y C14408T G15598R C16394Y C17104Y G18028K G19732K A20268R C22127Y C22879M A23403G C23731Y G23876R T24910Y G25947K T26972Y C27800M GGG28881RRS C29274Y G29734S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552409
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/MILK-991DF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559753
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-997C2F/2020
 C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T A29898R AA29902-

EPI_ISL_559754
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-997C4D/2020
 C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A

EPI_ISL_559755
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-997C5C/2020
 C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T

EPI_ISL_559756
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-997C7A/2020
 C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C A29891R AAAAAAAAAA29894-

EPI_ISL_559757
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-997C89/2020
 C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A A29897V A29903-

EPI_ISL_559758
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-997C98/2020
 C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A

EPI_ISL_559792
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C2EC/2020
 C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_559845
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF4A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4105T C4391A C11124T C14408T G14792T C15848T G19254T T19893C C21254T A23403G C25889T G28423A GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_559991
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-997A9E/2020
 G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T C29732T

EPI_ISL_559992
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-997AAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C313T C3037T G13850A C14408T C18252T A23403G G26840T G28396A GGG28881AAC A29882G A29891G A29895T

EPI_ISL_559993
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-997BC8/2020
 C241T C313T C3037T G13850A C14408T C18252T A23403G G26840T G28396A GGG28881AAC

EPI_ISL_559994
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-997BE6/2020
 G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560305
 2020-08-28 2020-09-28
 United Kingdom hCoV-19/Wales/QEUH-99630D/2020
 C241T C3037T G3053T C4002T G5950T G10097A G12769T C13536T C14408T G19732T A23403G C23731T GGG28881AAC

EPI_ISL_562644
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC11438/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T AAGTCATTT686- A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C23634T T23695C G25244T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562722
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC11400/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562723
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC11492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562730
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC10084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G T28026Y GGG28881AAC GC29773- GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_562739
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC11494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562787
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC10080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562797
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC10121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C9996T C14408T G16647T C17135T C18555T C19884Y G22927T G22992A G23401A A23403G A28416T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562834
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC10234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G C26947T G27870C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_562835
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC10235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3738T C4832T T7540C C9491T C14408T G16647T C18555T C19170T G21800T C21952T G22992A G23401A A23403G C26571T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562836
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC10238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C27688T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562846
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC10263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T A17627R C18555T G22992A G23401A A23403G A24610G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562892
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC10373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26768T C28253T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562900
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC10398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T3043C G4474R T7540C C9996T G12423R C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562925
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC10471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C10228T C14408T G16647T C18555T C18814T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_562930
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC10485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C10369Y T11192C C12763T G12843K C14408T C16247T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562974
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC10590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563306
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC11230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T42W C241T A1163T C3037T C5144T T7540C C14408T C14724Y G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563388
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC11472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563389
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC11473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C12809T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC C29580T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563394
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC11490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T A1163T C3037T T7540C C7874T T10342C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563406
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC11537/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T G7328T T7540C C14408T G16647T C18555T C20647T T21369C G22992A G23401A A23403G T28009C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563839
 2020-08-28 2020-09-30
 Australia hCoV-19/Australia/VIC13789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T141C C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G20489T G22992A G23401A A23403G G25599T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_568311
 2020-08-28 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98FAD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568432
 2020-08-28 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F02E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C3176T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568433
 2020-08-28 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98EFC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568434
 2020-08-28 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G13850A C14408T C18252T A23403G G26840T G28396A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568437
 2020-08-28 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F53E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568440
 2020-08-28 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98EE70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T T6148W C6286T G9049T C11396T C14408T G18025T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568444
 2020-08-28 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98EFD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568447
 2020-08-28 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98EF31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C8606T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568450
 2020-08-28 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98EE61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568451
 2020-08-28 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98EE25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568455
 2020-08-28 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F03D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568456
 2020-08-28 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F7ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568462
 2020-08-28 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F55C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568523
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C222T C241T C601T C3037T C10755T A12524G C14408T C16960A T18987C T19839C A23403G G23876A C25710A GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_568524
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C3037T G3482A C10755T C14408T T19839C C20703T C21597T A23403G GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_568525
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T T809C G1782A C3037T C9598T C10755T C14408T T19839C A23403G C24034T A25385G GGG28881AAC TGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29691-

EPI_ISL_568526
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T G269A C1385T T2685G C3037T C4002T G5164T C9994T G10097A C11868T G12514T C13536T C14408T C14877T A23403G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_568527
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0131/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C9857T A10026T C14408T C18568T C19041T C22264T A23403G A26530G C28253T C29520T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_568533
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T C9166T G10265A C14408T G20487T A23403G C25931T GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_568536
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C6578T C6762T G8414A G8849T T10738C C14408T C14724T C15588T C18946T C19380T A20268G C21846T A23403G G25352T C27230T T29577C G29734C CGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29750-

EPI_ISL_568540
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C3397T G10261T G14350A C14408T C17274T C19011T T19839C C21789T C21846T A23403G G23608T GGG28881AAC C29311T C29774T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_568541
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1479T C2710T C3037T C12455T C14408T C18029T T19839C A23403G GGG28881AAC AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_568545
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G3433T C4002T G10097A C13536T C14408T G23012A A23235T A23403G G23593C C23731T C25350T G25660T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_568547
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C475T C3037T C4002T G10097A G11083T C13536T C14396T C14408T A23403G C23731T G24794T GGG28881AAC T29035C G29290T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_568549
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C1549T C3037T C6701T C12664T C14408T C18138T G22021T A23403G C23758G GGG28881AAC A28998T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_568550
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T T1482A G2632T C3037T C4002T C6539T G10097A G11266T C11308T C13536T C14408T C14877T A23403G C23731T G27777C T28110C GGG28881AAC C29077T TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_568551
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C593T C3037T C4002T C4276T A4830G C7948T G10097A G11693A C13536T C14408T G17523T T19092C A23403G C23731T G24872T G25455A G28378T C28810T GGG28881AAC C29386A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_568553
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C3037T G7393A C14408T G17608A T19839C G21724T A23403G C25207T C25896T C26681T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_568554
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACC1- C241T C3037T C4002T T9619C G10097A C13536T C14408T A23403G C23731T A26576G GGG28881AAC G29179T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_568555
 2020-08-28 2020-10-02
 Peru hCoV-19/Peru/LIM-UPCH-0162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1420T C2469T C3037T C4002T G10097A C13536T C14408T C14877T A23403G C23731T G23868T GGG28881AAC AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_568639
 2020-08-28 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1541/2020
 A1- C241T C2416T C3037T C14408T C16616T A23403G G25563T G26268T C26885T C27603T C28887T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568640
 2020-08-28 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1542/2020
 ATT1- C241T C2416T C3037T C3602T C6310T G11596T C12081T C14408T A16455C C16616T G16901A C20740A A23403G G25563T C26885T C27603T C28887T C29353T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

MW023480
 2020-08-28 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5392T C9214T C9967T C12406T C14408T G15906T C18555T A23403G G25563T C28892T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MW023482
 2020-08-28 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1289/2020
 ATTAAAGGTTT1- C241T C1059T C1670T C3037T C5392T C9967T C12406T C14408T G15906T C18555T A23403G G25563T C28892T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

MW023486
 2020-08-28 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1293/2020
 C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

MW023487
 2020-08-28 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1294/2020
 ATTAAA1- C241T C1059T G1298A C3037T G12694A C14408T C17639T A18529G A20742T C21637T A23403G G25563T C27752T G29628T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_529708
 2020-08-29 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169EA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T G12315A C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_530161 MT997226
 2020-08-29 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2804/2020
 ATTAAAGGTTTATAC1- C241T T1947C C3037T C14408T C18877T T20955C C22444T G22918T A23403G A25501T G25563T C25792T C26735T C28854T C29741T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_530162 MT997235
 2020-08-29 2020-09-10
 United States SARS-CoV-2/human/USA/WA-S2805/2020
 ATTAAAGGTTT1- C241T T1947C C3037T C14408T C18877T T20955C C22444T G22918T A23403G A25501T G25563T C25792T C26735T C28854T C29741T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_530337
 2020-08-29 2020-09-11
 Australia hCoV-19/Australia/NSW2739/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8950T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24764T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_530352
 2020-08-29 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9904A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530353
 2020-08-29 2020-09-11
 United Kingdom hCoV-19/England/QEUH-990752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C622T C3037T G4657T T5182C C11758T C12043T C14408T C15324T G16846T C16887T A23403G C25075T C25904T C28269T C29733T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530361
 2020-08-29 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9902CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1288Y C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530362
 2020-08-29 2020-09-11
 United Kingdom hCoV-19/England/QEUH-99053A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T G3452A C6286T A8479R C14408T G21255C C21614T C22227T A23403G C26801G C27012T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530366
 2020-08-29 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9905D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530384
 2020-08-29 2020-09-11
 United Kingdom hCoV-19/England/QEUH-9904F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530386
 2020-08-29 2020-09-11
 United Kingdom hCoV-19/Scotland/QEUH-9902D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534445
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-9905A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G C25466A G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534446
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-990585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534449
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/QEUH-9905B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G C25466A G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535102
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535103
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4003/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535105
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535106
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C8606T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535107
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4007/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T C14408T G17278T A20268G A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535108
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535110
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G3052T G8371T C9430T C13721T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T C29034T A29039T G29044A C29541T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535111
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535112
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535113
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535114
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T G28202A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535116
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535117
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535118
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4019/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535119
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G24193T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535122
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535124
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4025/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C8606T C11394T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535127
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4028/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535128
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4030/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535129
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T G26814T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535130
 2020-08-29 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536419
 2020-08-29 2020-09-16
 Singapore hCoV-19/Singapore/878/2020
 ATTAAAGGTTT1- C36T C241T T1947C C3037T G3955T G11272T C14408T C18877T C21575T C22444T A23403G G25563T C26735T T27995C A28081T C28854T AAAAAAAAAAAA29892-

EPI_ISL_536420
 2020-08-29 2020-09-16
 Singapore hCoV-19/Singapore/879/2020
 AT1- T2029A A3061G C6310A C6312A C7851T G10496A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_536675 MW035473
 2020-08-29 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1303/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18486T A20268G T22162C A23403G C27213T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536697 MW035495
 2020-08-29 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1326/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C140T C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C G11083T C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536704 MW035502
 2020-08-29 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1333/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T T4066C C11674T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539919
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F7A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G G28325T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539929
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98F62C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28093T C28932T G29645T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540178
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A465E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540343
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540362
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G T24769C C25460T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540376
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F3E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540406
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-98F3CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540751
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/England/SHEF-CAA31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540770
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/England/SHEF-D1F38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C3037T C6990T C12400T C14408T A14748G C16877T C16915T G17331T C18877T A23403G G25563T C25710T C26111T C26735T G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540827
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540828
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G C25466A G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540834
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540835
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540842
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T C21614T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540849
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540856
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540857
 2020-08-29 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T C12076T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27534C G28851T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541414 LR882115
 2020-08-29 2020-09-22
 Switzerland 270172
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A413W A480R C3037T C3738T G9130T C13860T C14408T C16111T A16210W A23403G G25500A T27319C G28487A C28868T GGG28881AAC G29706T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541439 LR882130
 2020-08-29 2020-09-22
 Switzerland 270178
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C8917Y G11540T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541440 LR882125
 2020-08-29 2020-09-22
 Switzerland 270179
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K C7728Y G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28541K G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541441 LR882123
 2020-08-29 2020-09-22
 Switzerland 270181
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G20578T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541457 LR882120
 2020-08-29 2020-09-22
 Switzerland 270171
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5950K T7767C C8047T G12988T C14408T G15598A C17104T G18028T C19032T A20268G A20992R C22879A A23403G T24910C T26972C C27800A A27969R T28033K G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541498 LR882119
 2020-08-29 2020-09-22
 Switzerland 270174
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T G17443K C18877T G22992A A23403G G24872S G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541499 LR882114
 2020-08-29 2020-09-22
 Switzerland 270175
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T A3305C C6286T C14408T A16410W T19218Y G21255C C22227T A23403G C26801G C27944T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541509 LR882117
 2020-08-29 2020-09-22
 Switzerland 270176
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4009T C5183T C10525T G11161A C14206T C14408T G14638T C16349Y C17119A A23403G A26040G T27299C GGG28881AAC T29148C G29212A G29543T A29812R C29837M TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541529 LR882122
 2020-08-29 2020-09-22
 Switzerland 270170
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T A7152W T7305K C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541530 LR882126
 2020-08-29 2020-09-22
 Switzerland 270183
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A424M A427M G488K G509R T577Y C590Y A642W C3037T T7211W G10265A G11083T C14408T C15720T A15972G A16210W AT16347MK C19718T A23122M A23403G G26700T T28759Y GGG28881AAC G29348T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541531 LR882124
 2020-08-29 2020-09-22
 Switzerland 270184
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C904T C3037T C8683T C14408T G15406T A16210W A16387R C21637T A23403G A28169R GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541532 LR882127
 2020-08-29 2020-09-22
 Switzerland 270185
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4404Y C10156Y G10265A G11083T C14408T C15720T A15972G C19718T A23403G G26700T T28759Y GGG28881AAC G29348T C29774Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541533 LR882131
 2020-08-29 2020-09-22
 Switzerland 270186
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C465M C904T G2782K C3037T T7175W T7217Y C7299S C8683T C14408T G15406T A16210W C21637T A23403G A28169R GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541534 LR882139
 2020-08-29 2020-09-22
 Switzerland 270190
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5950K G6080A T8041C G10265A C11758T C14408T A15972G C19718T C20844T A23403G G23593T T28759Y GGG28881AAC G29736K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_547748
 2020-08-29 2020-09-24
 United States hCoV-19/USA/WI-GMF-17808/2020
 ATTAAAGGTTT1- C241T C1059T T1147C C3037T T9070C A10194G G11083T C13994T C14408T C14877T C17012T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548057
 2020-08-29 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C12846T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548064
 2020-08-29 2020-09-25
 New Zealand hCoV-19/New Zealand/WKO-ESR-20CV0217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548081
 2020-08-29 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549537
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/QEUH-996895/2020
 C241T C3037T G3053T C4002T G5950T G10097A G11083T C13536T C14408T G19732T A23403G C23731T GGG28881AAC

EPI_ISL_549538
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9968A4/2020
 C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C25000T C26060T A27455G GGG28881AAC G29227T C29466T A29771G

EPI_ISL_549868
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1408A C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G28817T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550263
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A80A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T4303C T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550269
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550272
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A73A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550273
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G942T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550274
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7165T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550278
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A4BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550280
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999F51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T A2491G C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550281
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A7A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C4455T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550282
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A5D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T A5949G G9526T C11497T G13993T C14408T G15766T A16889G G17019T G17572T G18170T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550283
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999C2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C1919A C3037T C10789T C12473T C14408T A23403G A27994T C28866T GGG28881AAC G29000T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550287
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999D66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550289
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A8BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C2091T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550293
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C19185T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550294
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A749/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550295
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A58B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC G29374A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550298
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999DDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550301
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A7D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T C22227T A23403G C23525T C23991T A28169G GGG28881AAC G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550302
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999FAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C1919A C3037T C10789T C12473T C14408T A23403G A27994T C28866T GGG28881AAC G29000T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550304
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550306
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A55E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C8152T C14408T C14925T G19254T G21255C C22227T A23403G C26801G T26861C C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550310
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A1D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C4686T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550311
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999CB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G252T C313T C3037T C5007T C5796A C14408T G14584A C14805T T15114C C15848T G20940T C22993G A23403G G23580C C25587T G26951C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550315
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999F42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T G19816T A23403G G25471T GGG28881AAC G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550319
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99A08A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550320
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A49D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550321
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A48E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T C26542T T26972C C27800A G29706T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550323
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A767/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5773C T7767C C8047T A9175G C14408T C17104T A19818G A20268G C22879A A23403G C27800A A28352G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550327
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999C96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T T17556C G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550328
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99A6A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256Y T3925Y G4006K C5170Y C5622Y C6286Y G11132K G14202K C14408T C17678T G19542K C19718Y T21773Y C22227Y C22388Y A23403G C26060Y A27609M GGG28881RRS C28932Y G29227T C29466Y G29645K A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550330
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A59A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C11074T G11083T C14408T C15720T A15972G G16912T C19718T A23403G G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550340
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999E09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C622Y C904Y C3037T G4657K T5182Y C8683Y C11758Y C12043Y C14408T C15324Y G15406K G16846K C16887Y C21637Y A23403G G23426K C25075Y C25904Y A28169R C28269Y GGG28881RRS C29733Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550344
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A63D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T G26416T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550347
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999C3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550349
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999E81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975T C29144T G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550352
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999EEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G1548A C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G G25563C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550354
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999C5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G18745T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550357
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-999CC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G G24743T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550360
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999D48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1567A G1957T C3037T T7767C C8047T C14408T C17104T A20268G C22879A A23403G G25269C C27800A C29445T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550361
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999F06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G1548A C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G G25563C C26801G G27758T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550362
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A9BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G991T C3037T C4543T G5629K C5934T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19480T G22992A A23403G G26700T C27635T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550366
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999EAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G1548A C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G G25563C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550372
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A99E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550373
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-999CD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T A20760R T21773C C22388T A23403G C26060T G28280T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550382
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A04E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G T25202K C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550386
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A9AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550387
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T A16582T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550389
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A785/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T C21691T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550391
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999D0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T G6404T G10265A -11075TTT G11083T C14408T C15720T A15972G C19718T A23403G G26700T C28651T T28759C GGG28881AAC G29348T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550392
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A1C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T G6337T C7303T C7564T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T C16293T C16877T G21123T G21800T A23403G G25563T T27622C G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550394
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A9F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G8612T G14202T C14408T C17304T G18078A G19542T C19718T C22388T A23403G G25234T C25609T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550396
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-999CF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C2371Y C3037T T3256C G3794T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550398
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999ECD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G A21137G TACATG21765- G21786T G21800T C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550400
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99A679/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550404
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A3BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1319A C3037T C3634T C3884A C5301T C14408T C15324T G17721T G18898T C21575T T22246C A23403G C26894T C28923T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550407
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550409
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A8CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C T3766C T4346G C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550412
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-999D75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C A22206T C22227T A23403G G25049T G25062T C26801G A28271G C28657T C28932T G28960T C29366T G29402T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550415
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A6B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550897
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA63A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550959
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAA98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550972
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA62B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551902
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9907F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18568T C18877T C22444T A23403G G25563T C26735T G27852T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552117
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99368F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G8612T G14202T C14408T C17304T G18078A G19542T C19718T C22388T A23403G G23501C C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559835
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF301/2020
 C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC A29888R AAAAAAAAAAAAAA29890-

EPI_ISL_559837
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF35C/2020
 C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC

EPI_ISL_559843
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF486/2020
 C241T T1603C C3037T A9634T G10265A G11083T C14408T C17822T A18140G C18306T T18786C ATT21631- C22482T A23403G GGG28881AAC

EPI_ISL_559848
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF4D1/2020
 C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T A25589T T26972C C27800A G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_559986
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9968C2/2020
 AT1- C21T C40T C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G C25466A G25563T C26735T T26876C C28311T C28854T A28900C G29477T A29900G

EPI_ISL_559987
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9968D1/2020
 G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_559988
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9968E0/2020
 C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730-

EPI_ISL_559989
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9968FF/2020
 G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_559990
 2020-08-29 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-996929/2020
 C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A

EPI_ISL_560805
 2020-08-29 2020-09-29
 United States hCoV-19/USA/MN-MDH-1718/2020
 AT1- C241T C3037T C14408T C18486T A20268G C21575T T22162C A23403G A28305T C28854T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_562172
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC10124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G G27282A GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562613
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC11435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8650Y C14408T G16647T A17337G C18555T C22858T G22992A G23401A A23403G -25700CCC GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_562710
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC10448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G G25650K GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562711
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC10460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562729
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC10082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_562788
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC10081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18814T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562799
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC10125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12213T C14408T G15594T G16647T C18555T G22992A G23401A A23403G C26873T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563259
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC11127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29347T G29692T G29777T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563327
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC11317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C7162T T7540C C13860T C14408T G16647T C18555T A21446G G22992A G23401A A23403G A26927G C27942T C28313T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563332
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC11335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G6320T T7540C C14408T T15102G G15594T G16647T C18555T C22523Y G22992A G23401A A23403G T25036C GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563333
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC11336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATC1- C241T A1163T C3037T G6320T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G C23655Y T25036C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563358
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC11402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563362
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC11413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T G5489A T7540C T11192C C12763T C13957T C14408T C16247T G16647T A17337G C18555T G18580T G22992A G23401A A23403G GGG28881AAC C28957Y ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563363
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC11414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563364
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC11415/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563365
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC11418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C T11192C C12763T C14408T C16247T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563387
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC11470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C6033T T7540C C14408T C14980T G16647T C18555T C18568T G22992A G23401A A23403G C23457A C24026T C25916T GGG28881AAC C29774T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563392
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC11481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T C21207Y C22792Y G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563395
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC11491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G G26824A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563803
 2020-08-29 2020-09-30
 Australia hCoV-19/Australia/VIC13669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T T1224K C3037T T7540C C9996T C14408T G16647T C17135T C18555T G22927T G22992A G23401A A23403G A28416T G28851A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_568321
 2020-08-29 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F45F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6896T T8749C A11782G C14408T T21570G C21575T A23403G T25473C C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568364
 2020-08-29 2020-10-01
 United Kingdom hCoV-19/England/MILK-99E262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3786G C5055T G11851T C14408T C14786T G19348T C21781T A23403G G24812T C26895T T27616C G28817T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568431
 2020-08-29 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F3DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568441
 2020-08-29 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C4002T C5974T G6622C A8590C C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC C29670T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568442
 2020-08-29 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568443
 2020-08-29 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F3F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C8606T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568448
 2020-08-29 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-98F352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1469T C3037T A9409G T12017C C14408T G22113T A23403G T23849C G26746T T27522C G28209C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MT994978
 2020-08-29 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994979
 2020-08-29 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994980
 2020-08-29 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-140/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994981
 2020-08-29 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994982
 2020-08-29 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994983
 2020-08-29 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994984
 2020-08-29 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994985
 2020-08-29 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994986
 2020-08-29 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994987
 2020-08-29 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994988
 2020-08-29 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

MT994989
 2020-08-29 2020-09-13
 Egypt SARS-CoV-2/human/EGY/EGY-149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C3037T C14362T G15907A T17091C A23403G G25563T G26257T A29871G AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_529227
 2020-08-30 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169E91/2020
 ATT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T G18756T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C G27382K C27800A G29734C

EPI_ISL_529233
 2020-08-30 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169FCB/2020
 AT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T G18756T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_529709
 2020-08-30 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169EBF/2020
 ATTA1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_529710
 2020-08-30 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169EDD/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T C4543T G10396T C11224T C11941T C12043T C12242T C14408T C18877T C22444T A23403G C25162A G25563T C26735T C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_529712
 2020-08-30 2020-09-10
 United Kingdom hCoV-19/Wales/PHWC-169F25/2020
 A1- C241T C3037T G3053T C4002T G5950T G10097A C11620T C13536T C14408T G19732T A23403G C23731T A26528G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_530281
 2020-08-30 2020-09-11
 Australia hCoV-19/Australia/QLD1029/2020/P1
 C241T A1163T C3037T T3166C T7540C C14408T G16647T C18555T G21666T G22992A G23401A A23403G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_530282
 2020-08-30 2020-09-11
 Australia hCoV-19/Australia/QLD1030/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A1163T C3037T A3484G T7540C C14408T G16647T C18555T G21666T G22992A G23401A A23403G GGG28881AAC

EPI_ISL_530358
 2020-08-30 2020-09-11
 United Kingdom hCoV-19/England/QEUH-98FF9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535132
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G T25510G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535134
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535135
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T G1820A A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535136
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T G1820A A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535137
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2299T C2706T C3037T C4084T C14408T A20268G A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535138
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T G1820A A2576T C3037T C5175T C6401T C6573T C14408T G22113T A23403G C23683T C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535141
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535144
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C8606T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535145
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535146
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T T11475C C14408T C15615T G21255C C21614T C22227T A23403G C25509T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535147
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T G1820A A2576T C3037T C5175T C6401T C9857T C14408T G21586T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535148
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T G1820A A2576T C3037T C5175T C6401T C7108T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535149
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535150
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C8606T C11394T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535151
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T C22444T C23127T A23403G C25466A G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535154
 2020-08-30 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G G24743T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536421
 2020-08-30 2020-09-16
 Singapore hCoV-19/Singapore/880/2020
 ATTA1- T2029A A3061G C6310A C6312A C7851T G10496A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_536700 MW035498
 2020-08-30 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1329/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T A23403G G23900C A24253T G25563T G28681T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536702 MW035500
 2020-08-30 2020-09-16
 United States SARS-CoV-2/human/USA/NY-UW-1331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T C7817T T14191C C14408T G15672T C16092T C16260T G17721T G18985T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536706 MW035504
 2020-08-30 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18538T G18985T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539939
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-9900B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540010
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-9901AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G T24769C C25460T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540039
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/Scotland/QEUH-990190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540054
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9901FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7037T G9130T C14408T T20973A A23403G T27319C G28487A C28868T GGG28881AAC G29212T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540091
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/England/QEUH-990628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C6033T G11083K C14408T A23403G G25617T C28435T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540115
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/England/QEUH-990206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T T11522G C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540120
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/England/QEUH-98FE7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T ATAGTT6510- C8016T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540733
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/England/SHEF-C5D5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540735
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/England/SHEF-C6E75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540736
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/England/SHEF-C7111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540758
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/England/SHEF-CE8BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540779
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR3982/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C8123T C14408T G21255C C21614T C22227T A23403G C26078T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540829
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G9802A G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540830
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G C23533T T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540843
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C25344T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540858
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540859
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T C14408T A20268G A21979T A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540863
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540864
 2020-08-30 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541442 LR882140
 2020-08-30 2020-09-22
 Switzerland 270189
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671T C14408T C14805T A16210W G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T G28703C C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541459 LR882145
 2020-08-30 2020-09-22
 Switzerland 270213
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C904T C3037T C8683T C13721Y C14408T G15406T C21637T A23403G A28169R G28325T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541460 LR882159
 2020-08-30 2020-09-22
 Switzerland 270214
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G598T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T C19032T A20268G C22879A A23403G T24910C C26934A T26972C C27800M G29734C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541461 LR882160
 2020-08-30 2020-09-22
 Switzerland 270215
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1457Y C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G C16954T G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G27877T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541462 LR882150
 2020-08-30 2020-09-22
 Switzerland 270216
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1077Y C3037T C6021T C6286T T7293Y T7305K G12794R C13671Y C14408T C14805T C16049T A16210W G16416R G17278T AT20284TC G21255C C22227T A22960W A23122M A23403G C26801G A27755T C28932T G29645T A29863R A29865W TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541538 LR882147
 2020-08-30 2020-09-22
 Switzerland 270206
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671Y C14408T C14805T G17278T C17491T AT20284TC G21255C C22227T A23403G C25658Y C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541539 LR882144
 2020-08-30 2020-09-22
 Switzerland 270207
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5950K G6080A T8041C G10265A C11758T C14408T A15972G C19718T A23403G G23593T G28001K T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_547749
 2020-08-30 2020-09-24
 United States hCoV-19/USA/WI-GMF-17866/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T AAGTCATTT686- A696C C3037T G3871T T3931C C4226T C5672T C6402T A7837C T8082C G12202T C14408T A19629G C21431T G22317A A23403G G24199T C28977T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549808
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D45E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C3037T C6573T G7675T C14408T C15180T C15277T T15888C T19839C A23403G G28307A GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549809
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CE06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1567A G1957T C3037T T7767C C8047T C14408T C17104T A20268G C22879A A23403G G25269C G25290K C27800A C29445T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549810
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CF5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G7936T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549811
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CF6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G7936T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549814
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T T10177C C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549816
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CD45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T G10870T C14408T C15324T A23403G C25549T C28887T G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549818
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CD09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5761A C9430T G10540T C12823T C14408T G19861T C22480T A23403G C24418T C24865T C28311T GGG28881AAC G28980T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549821
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99D01E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T G22249K A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549822
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CB78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T A23403G G25471T C27689T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549823
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D02D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2531T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549825
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D11B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549826
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549828
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549831
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CE15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549833
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6319G C6629T C14408T C15720T A23403G G25088T T26149C G27877T G27996T C28253Y GGG28881AAC A29424T G29688A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549834
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CCC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A21137G A23403G G24328T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549835
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CE24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29000T G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549837
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CE51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1722T C2509T C3037T C6286T C6538T C14408T G21255C C22227T G22468T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549838
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CCFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T C20823T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549839
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CCDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G8612T G14202T C14408T C17304T G18078A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549840
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D0F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549841
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CEF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2032C C3037T G5972T C11514T C13168T C14408T C18877T C22444T A23403G G24764T G25563T C26735T C27059T G27806T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549842
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CD36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T G2527T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549843
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CB69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C13297T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549846
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CF7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549849
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CD54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4406T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549850
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CFE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T A12103G C14408T G21099T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549851
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CC75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G16793A G18332T G21255C C21614T G22205C C22227T A23403G C24034T G24867T C26801G C27944T T28229C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549852
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D2FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G G27517R C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549853
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CCA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549854
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CFF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549855
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T A1163T C3037T T3256C C5622T C6638T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549856
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CB87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T A23403G G25471T C27689T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549857
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549858
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G376T T469C C3037T T7767C T7984C C8047T T11459G C14408T C16658T C17104T G18214A C18796T A20268G C22879A A23403G G28851T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549860
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D0E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549863
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99D04B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549864
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CB5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549865
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D38E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T141C C241T C313T C3037T C3369T C6573T G10196T G11417T C14408T A16076G G22051C C22326T A23403G G25681C C27294T G28396A GGG28881AAC A29549T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549869
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CB96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549870
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D37F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549871
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CBC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549872
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D56A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T G3955T C6286T C14408T A15779G C20283T C21855T A23403G A25505G G25906C G25996T C27002T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549878
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CD63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549881
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2453T C3037T C6317T C7528T A8062T C10543T C14408T A20019G G22918T A23403G G28396A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549882
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D685/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549884
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CF9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T T7767C C8047T C9308T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A G22899T A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549889
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D46D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549890
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CC57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT C22591T A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549891
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CD90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T G13348K C14408T G15598A G16206K C16394Y C17104T G18028T A20268G TACATG21765- C22127Y C22879A A23403G G23876R T24910C G25489K G25494K G25947K T26972C C27800A C29274Y G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549892
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A21023G A21317C A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549893
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CF8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21099T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549894
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D44F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C7851T C14408T C18894T G21255C C22227T G22346T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549895
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CD72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549896
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D00F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549901
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CE60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C4499A T7767C C8047T G8179T C12439T C13372T C14408T C17104T T19242C A20268G C22879A A23403G C25083T C25624T C26071T A26319G G28079T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549905
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CE42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1722T C2509T C3037T C6286T C6538T C14408T G21255C C22227T G22468T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549909
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CF03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61R G204C C241T C1288T C3037T T3163C C4345T C9836T C12053T C14408T G22468T A23403G T25150C T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549910
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CD27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G8612T G14202T C14408T C17304T G18078A G19542T C19718T C22388T A23403G C26060T C28253Y GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549911
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CBF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549912
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CDBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C C1722T G1820A A2869G C3037T C6445T C10868T C14408T G15652T A23403G G23438T C27230T GGG28881AAC C29095T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549915
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CDCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549916
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D0A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549919
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CED9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T TATAACTGAAAGTAAACCTTCAGTTGAACA3907- C5575T T5707C A11140T C14408T T18185C C18687T A19779G A20268G A23403G T25039C C25452T C26894T A27083G C28045T G28899T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549922
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CC0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC C29034Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549923
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D05A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G28042T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549924
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CF21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1269G C1612T C3037T C10039T C14408T C18877T C19017T C21622A C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549925
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CF30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549926
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D0B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549929
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CDFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G2755T C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549932
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549934
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CC66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T T15252A A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC G29195T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549935
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D0C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549939
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CE33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C16394T C17104T G18028T A20268G TACATG21765- C22127T C22879A A23403G G23876A T24910C G25947T T26972C C27800A C29274T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549940
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99CDDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C119Y G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549942
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G15594T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549943
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CD81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T T10177C C11497T G13993T C14408T G15766T A16889G G17019T C18877T G21989K G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549944
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CDAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C16394T C17104T G18028T A20268G TACATG21765- C22127T C22879A A23403G G23876A T24910C G25947T T26972C C27800A C29274T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549945
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T G25726T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549947
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CC93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T C4901T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C12099T C14230A C14408T C17939T G19056T G21800T A23403G G25563T G27632T C27804T C28744T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550264
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-999F33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5629K G5950T T7767C C8047T G12988T C14408T G15598A C17104T GG18027TT C19032T A20268G TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550265
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A15A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550267
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A13C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T T8743C C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G16377T G16647A G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550270
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-999FD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T C18377T A23403G T25202K C25207T G25565T C25665T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550275
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550276
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-999F24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2623T C3037T C8318A C11747T C14076T C14408T T14568C G19117T G20691T G21746A A23403G A24162G T24892C GGG28881AAC C29200T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550279
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-999E36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T4303C T7783C C14408T A15984T C20946T C22075T A23403G GC25552TT C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550285
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A0E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550290
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-999FBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T G19800T G21255C C22227T A23403G G25088T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550303
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A11E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550307
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99B56C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550308
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A327/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3743T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T C24358A G25409C G25563T A26319G G28476C C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550313
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-999FE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550316
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-999F8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T T19344C G19816T G22468T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550318
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A2B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550324
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A12D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G T13339C C14408T G20275A C20402T T21570G C21575T A23403G T25473C C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550329
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A9DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G26918T C27297T C27610T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550331
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-999F7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1479T C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C25797A T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550339
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A0D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550341
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C18377T C20946T C22075T A23403G G24497T G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550342
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-999F15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C14408T A20268G G23401T A23403G C25731T C28253T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550350
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A0C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T A1163T C3037T T3256C C5622T C6638T G12202T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550353
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-999FCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C207Y C241T G625R C3037T C4002Y G5950K G10097R C13536Y C14408T A18259R G19732K A20742M G22332R A23403G C23731Y G26730K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550358
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A1E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C24026T C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550365
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A03F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550377
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99B55D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G7936T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T G27589T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550379
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C3037T C3602T G4442T C6525T C6941T C8344Y C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550385
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-999FF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1348Y C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550401
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99B414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T G4105T C4391A C11124T C12138T C14408T G14792T C15848T G19254T T19893C A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550402
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99B4F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550405
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99B942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16394A C19017T T19839C G20033A G22468T A23403G C24904T G25494T C25546A GGG28881AAC A29499T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550410
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99A2EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550414
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99BAE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550519
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E43F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C11173T C14408T A15779G C20283T C21855T A23403G A25505G G25906C G25996T C27002T C28651T C28869T G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550521
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DE7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C274T C313T C3037T C14408T G22801T A23403G C27998T G28077C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550522
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DCFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550523
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D89E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9042T C14408T A23403G G26918T C27297T C27610T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550529
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550530
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D95F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T C15738T C20031T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550531
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550532
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A21317C A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550535
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99C54D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550536
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99DA5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1023M C3037T T9115A G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550540
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E10B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550543
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DF4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G G25396T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550552
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99C52F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550554
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C A22206T C22227T A23403G G25049T G25062T C26801G C28657T C28932T G28960T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550557
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1603C C3037T G10265A G11083T C14408T C17822T A18140G C18306T ATT21631- C22482T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550558
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204C C241T C1288T C3037T T3163C C4345T C9836T C12053T C14408T G22468T A23403G T25150C T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550561
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C8EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550566
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C62C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C241T C3037T C3602T C6941T C14408T C15324T A16044T G21295T C21855T A23403G G25314T A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550568
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DAA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G15594T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550569
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C8AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T G25641K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550571
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C6B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G A25697G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550572
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C4E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4755T T7767C C8047T G12988T C14408T G15598A G16813T C17104T G18028T C18457T C19032T A20268G TACATG21765- C22879A A23403G T24910C T26972C C27800A G28936A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550577
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C5E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550580
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DA2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C6114Y G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550582
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C4D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C1121T A2895G C3037T C6395T C11020T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550583
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C6FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550584
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T G25538K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550585
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DBE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G12817A C14408T G14414T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550587
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99C7DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T A14348R C14408T C15981T C18877T C19374T C22444T A23403G G25563T C26022T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550588
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DB2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550589
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D7CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550592
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E46C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C8090T G9431A C10207T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550598
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C7ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C3832T C5622T C5806Y G11083T G14202T C14408T G14653K G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T G29449T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550600
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DA10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550602
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G8612T G14202T C14408T C17304T G18078A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550605
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DB59/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C18828Y C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550606
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C6636T C7528T A11576T C14408T C18877T C22444T A23403G G25563T C26645T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550608
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550610
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E45D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T A1163T C3037T T3256C C5622T G8612T T9495A G14202T C14408T C17304T G18078A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550612
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DB0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T A1163T C3037T T3256C C5622T C6638T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550613
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DFF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G15594T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550614
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99C53E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T C22388T A23403G C26060T G26792K GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550617
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E44E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G8612T G14202T C14408T C17304T G18078A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28908S G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550619
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D99B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683Y C11514T C13168T C13551T C14408T C18877T C22444T A23403G G24764T G25563T C26735T C27059T G27806T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550620
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DB86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550621
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D9F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550627
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DB1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C25571A C26464T GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550628
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E47B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G376T T469C C3037T T7767C T7984C C8047T T11459G C14408T C16658T C17104T G18214A C18796T A20268G C22879A A23403G G28851T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550633
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C4B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T C4901T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C12099T C14230A C14408T C17939T G19056T G21800T A23403G G25563T G27632T C27804T C28744T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550634
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550635
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C6E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550638
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99C4AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A642G T772C A2869G C3037T G6352T C6445T C10868T G11417T C14408T G15652T G20145K C20428T A23403G G23438T G28077T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550643
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G7936T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550644
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T G22051K A23403G A28169G G28325T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550645
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DC83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T A1163T C3037T T3256C C5622T C6638T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550650
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DD17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C4455T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550652
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C8BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T T9151C C9430T C9693T C13887T C14408T G16853T G21796T C23248T A23403G G25429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550654
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DC56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1306T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550661
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DBFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A1386G C3037T T3256C C5622T G11083T C11345T G14202T C14408T G16549A A19020R G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550663
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C71A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T C18377T C20178Y A23403G C25207T G25565T C25665T T26160C G26918T C27503S C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550664
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DF5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G18782T G21255C C22227T G22346T A23403G C26801G C28932T C29376T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550665
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99DA7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T9115A G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550667
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E04A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18568T C18877T C22444T A23403G G25563T C26735T G27852T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550671
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C7A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G18782T G21255C C22227T G22346T A23403G C26801G C28932T C29376T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550675
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99DE8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550681
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D7EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C11514T T14313C C14408T G15652T A23403G G23438T C25006T C28253Y GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550682
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99DA6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550683
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D2EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1146R T1603C C3037T G10265A G11083T C14408T C17822T A18140G C18306T G20925A ATT21631- C22482T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550684
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DC65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1547R C3037T T7767C C8047T G12988T G13897K C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G28884T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550688
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DD08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T T445C C3037T C4815T C6286T C14408T G21255C C22227T A23403G T26491C C26801G C28932T A29500G G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550689
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T A4548G C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T T26561C GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550691
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C6D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550692
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T G4960T T9205C C14408T C16887T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550695
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C5D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G3230T C6327T C12663T C13005T C14408T C18252T A23403G G28396A C28849T GGG28881AAC G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550698
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E02C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18568T C18877T C22444T A23403G G25563T C26735T G27852T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550699
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C4C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C501Y C3037T G4006T C4467Y C5170T C6286T G11132T C14408T C15324Y G20170R G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550703
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C1919A C3037T C10789T C12473T C14408T A23403G A27994T C28866T GGG28881AAC G29000T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550704
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D8AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550705
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D8BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G15689A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550711
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99C5B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G18898T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550713
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D1FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550715
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E11A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T GTCATGTTA510- C1059T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A21317C A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550717
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DBA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T A10978T C14408T C16469T C17104T G18803T T19016A A20268G T20799C C21635T C22879A A23403G G25320T C29627T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550718
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DD44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T A1305G C2143T C3037T C4234T C8818T C13554T C14408T G17686T C17825T C18252T A23403G T26552C G28396A GGG28881AAC G29465K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550719
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D88F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G A9848G C13199A C14408T C19488T A23403G C26527T C28391T T28756C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550727
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DA3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550731
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D1EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T C29555T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550733
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T A25589T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550735
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C5F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C1121T A2895G C3037T C6395T C11020T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550736
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550737
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D7DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T C22498Y A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550745
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D7A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396Y C14408T G21255C C21614T G22205S C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550746
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D98C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C2062T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G G25234T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550751
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D7FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C11514T T14313C C14408T G15652T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550757
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C4F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A6058R C6286T C7926T C9745T C14408T A16607G G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550758
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C45F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1659T C3037T C3884T G6446T C9811T C14408T C18877T C20199T C21234A C22713T A23403G G25563T C26139T C26735T T27634C G28975T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550759
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DFA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550761
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C56B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G19824T G21255C G21518S C22227T G22346T C22377T A23403G C26801G C28846T C28932T G29645T G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550762
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077M C3037T C3602T C6941T C12488T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T A26174W C28651T C28869T C29409T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550763
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C57A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A C5826T A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550764
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C7CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G7294A C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550765
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550766
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C5C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550770
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99C55C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G21641T C21811A C22432T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550772
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D7BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T T10177C C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550774
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C64A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550775
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C61D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19340T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550787
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DC38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T G8600T C10868T T14313C C14408T G15652T G22468T A23403G G23438T C25006T G28077T C28253Y GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550788
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C6C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G G25250T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550791
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D1DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G G28325T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550793
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1102T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550811
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9AA6C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550820
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A989F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G G27497A A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550826
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9AA658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550829
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA5C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T C20823T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550841
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5704K T7767C C8047T C9430T A10978W C14408T C16469T C17104T G18803T A20268G T20799C C21635Y C22879M A23403G G25320T A28855G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550851
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA6A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C G21316T C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550864
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G16864A G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550889
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635Y AAGTCATTT686- C3037T T7767C C8047T T11522K G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A C28253Y G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550893
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T T7359Y G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T C20823T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550895
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C27303A A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550900
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA5E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T C20823T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550914
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9AA61C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C11620T C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550920
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C6636T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550924
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA5B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T C20823T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550944
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA6FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550945
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9AA6B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C G3794T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550947
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA5A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2040T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G C25487G A25505G G25906C G25996T C27208T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550965
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA667/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550968
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550990
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA60D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28045Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550991
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA70A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551004
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8DFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551126
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C4686T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551136
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8E34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G10424A G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551213
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A91A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T G210K C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551216
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8E25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T G21295T C21855T A23403G G24800K G25314T A25505G C25521Y G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559765
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99B14A/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G A29903-

EPI_ISL_559766
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99B159/2020
 ATTAAAGGTTTATACCTTC1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T

EPI_ISL_559767
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99B168/2020
 C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T

EPI_ISL_559768
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99B8AF/2020
 C241T C622T C3037T G4657T T5182C C11758T C12043T C14408T C15324T G16846T C16887T A23403G C25075T C25904T C28269T C29733T A29900R

EPI_ISL_559769
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99B933/2020
 C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A

EPI_ISL_559770
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99BC1C/2020
 C241T G443A G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T

EPI_ISL_559771
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99BC3A/2020
 C241T C835T C3037T C14408T C16575T A23403G G25617T GGG28881AAC

EPI_ISL_559772
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99BC49/2020
 C241T C3037T G7037T G9130T C14408T T20973A A23403G T27319C G28487A C28868T GGG28881AAC G29212T A29873T AAAAAAAAA29895-

EPI_ISL_559773
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99BE16/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G AAAAAAAAAAAAAAAAA29887-

EPI_ISL_559774
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99BE34/2020
 C117Y A142M C241T C1150T G1820A A2576T C3037T C4999T C5175T C6401T C14408T A23403G C25096T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_559775
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99BFAA/2020
 ATT1- C241T C835T C2091T C3037T C14408T A23403G G25617T GGG28881AAC AAAAAAA29897-

EPI_ISL_559776
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99BFB9/2020
 C241T C835T C2091T C3037T C14408T A23403G G25617T GGG28881AAC

EPI_ISL_559777
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99BFD7/2020
 C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC A29874W

EPI_ISL_559778
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99BFE6/2020
 C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC

EPI_ISL_559779
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C01F/2020
 C241T G1210T C3037T G9802T G12067T C14408T C17766T G22344T A23403G GGG28881AAC C29518T A29896R AAAAAA29898-

EPI_ISL_559780
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C02E/2020
 C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC

EPI_ISL_559782
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C097/2020
 C241T T445C C2973T C3037T C6286T G9805T G11083T C14408T G21255C C22227T A23403G T26573C C26801G C27944T C28932T G29645T

EPI_ISL_559783
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99C0A6/2020
 C241T C904T C3037T C8683T C12445T C14408T G15406T G16795T C21637T A23403G A28169G GGG28881AAC

EPI_ISL_559834
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF2E6/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G A29882R A29886G A29897R AA29902-

EPI_ISL_559995
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-99B4C9/2020
 G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_559996
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-99B4D8/2020
 G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T A29903-

EPI_ISL_559997
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-99B62D/2020
 G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29774T

EPI_ISL_559998
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-99B960/2020
 C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- A29894G

EPI_ISL_559999
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-99BE07/2020
 C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC

EPI_ISL_560000
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-99BF5F/2020
 T52W C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G A29881R A29886R AAAAAAAAAAAAA29891-

EPI_ISL_560001
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-99BF6E/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C17518T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_560002
 2020-08-30 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-99BF9B/2020
 G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T C29167T G29645T

EPI_ISL_560797
 2020-08-30 2020-09-29
 United States hCoV-19/USA/MN-MDH-1710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A696C C3037T G3871T T3931C C6285T C14016T C14408T C19524T C20178T C20429T A23403G G24770T C26028T G28347A C28977T G29736T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_562738
 2020-08-30 2020-09-30
 Australia hCoV-19/Australia/VIC11408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562789
 2020-08-30 2020-09-30
 Australia hCoV-19/Australia/VIC10085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C8344Y C14408T G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562950
 2020-08-30 2020-09-30
 Australia hCoV-19/Australia/VIC10535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23069K G23401A A23403G C26228Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563113
 2020-08-30 2020-09-30
 Australia hCoV-19/Australia/VIC10828/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T3043C C5986T T7540C C9996T A10236G G14137A C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563357
 2020-08-30 2020-09-30
 Australia hCoV-19/Australia/VIC11399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T A21137R C21516T G22992A G23401A A23403G A27024C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563370
 2020-08-30 2020-09-30
 Australia hCoV-19/Australia/VIC11434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T A18298G C18555T C22480T G22992A G23401A A23403G C24026T T27957C GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563375
 2020-08-30 2020-09-30
 Australia hCoV-19/Australia/VIC11449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T T508A A1163T C3037T T7540C C8917T C14408T G16647T C18555T C20930T G22992A G23401A A23403G A24340C G25993A G27506A GGG28881AAC G29692T G29777T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563376
 2020-08-30 2020-09-30
 Australia hCoV-19/Australia/VIC11450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C11514T C12116T C14408T G16647T C16887T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563384
 2020-08-30 2020-09-30
 Australia hCoV-19/Australia/VIC11465/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563385
 2020-08-30 2020-09-30
 Australia hCoV-19/Australia/VIC11467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563386
 2020-08-30 2020-09-30
 Australia hCoV-19/Australia/VIC11469/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T C19910Y G22992A G23401A A23403G T27322Y GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563826
 2020-08-30 2020-09-30
 Australia hCoV-19/Australia/VIC13755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C9996T C14408T G16647T C17135T C18555T G22927T G22992A G23401A A23403G A28416T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_568292
 2020-08-30 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-990673/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T CG21304AA C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568306
 2020-08-30 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-99043D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568332
 2020-08-30 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-99042E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683Y C904T C3037T C8673Y C8683T C14408T G15406T C21637T A23403G G23426T A28169G C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568363
 2020-08-30 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-990637/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C6033T G11083K C14408T A23403G G25617T C28435T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529696
 2020-08-31 2020-09-10
 United Kingdom hCoV-19/Scotland/EDB7378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530334
 2020-08-31 2020-09-11
 Australia hCoV-19/Australia/NSW2722/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8950T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24764T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_530335
 2020-08-31 2020-09-11
 Australia hCoV-19/Australia/NSW2723/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8950T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24764T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_535156
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535157
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C8606T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535159
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535160
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T T11475C C14408T C15615T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535162
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T C22444T C23127T A23403G C25466A G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535164
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535166
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535168
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T G27621T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535169
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535171
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T C22444T C23127T A23403G C25466A G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535172
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535173
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G G24743T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535175
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T G1820A A2576T C3037T C5175T C6401T C6573T C14408T G22113T A23403G C23683T C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535176
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T G1820A A2576T C3037T C5175T C6401T G12128A C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535177
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G C25466A G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535178
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T C12076T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27534C G28851T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535180
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4090/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535182
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Scotland/CVR4092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G1127T C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535191
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A04F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C8139T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T C16611T T17763C G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_535194
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A07C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C3099T G3955T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T C16611T T17763C G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_535212
 2020-08-31 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A1B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T C16611T T17763C G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T

EPI_ISL_535575 EPI_ISL_538552
 2020-08-31 2020-09-15
 Spain hCoV-19/Spain/CT-IrsiCaixa-2020090134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGA1- G204T C241T T445C C3037T C4618Y C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29687-

EPI_ISL_536423
 2020-08-31 2020-09-16
 Singapore hCoV-19/Singapore/882/2020
 ATT1- C241T C1457T C3037T C8917T G9389A C11003T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_536424
 2020-08-31 2020-09-16
 Singapore hCoV-19/Singapore/883/2020
 ATTA1- C241T C1457T C3037T C8917T G9389A C11003T C14408T C22088Y A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_536425
 2020-08-31 2020-09-16
 Singapore hCoV-19/Singapore/884/2020
 ATTA1- C241T C1457T C3037T C8917T G9389A C11003T C14408T A23403G GGG28881AAC G29751R AAAAAAAAAAAA29892-

EPI_ISL_536427
 2020-08-31 2020-09-16
 Singapore hCoV-19/Singapore/886/2020
 ATTA1- C241T C1457T C3037T C8917T G9389A C11003T C14408T A23403G GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_536428
 2020-08-31 2020-09-16
 Singapore hCoV-19/Singapore/887/2020
 AT1- C241T C1457T C3037T G8536R C8917T G9389A C11003T C14408T A23403G GGG28881AAC A29799R AAAAAAAAAAAA29892-

EPI_ISL_536658 MW035456
 2020-08-31 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T C8660T C11224T C11956T C12025T C14408T C19789A T19839C A23403G C23707T GGG28881AAC C29284T C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536663 MW035461
 2020-08-31 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6336T C14408T C18421T G19096A T19839C A23403G C27689T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536670 MW035468
 2020-08-31 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11761T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C28948T C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536671 MW035469
 2020-08-31 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5055T C5672T A7837C C14408T T14700C G16647C G17679T G23120T A23403G G25606T C25854T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536673 MW035471
 2020-08-31 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7869T T8545C G13960A C14408T C17569T A23403G C25521T G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536677 MW035475
 2020-08-31 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T A696C C3037T G3871T T3931C C6906T A8390G C14408T C19402T C21575T A23403G G24124T G24926T C25153T G25305T C28698T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536701 MW035499
 2020-08-31 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1330/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1824T T3011C C3037T C14408T C19718T G22205T A23403G C25919T T27869C C28657T T28853G G28985T C29149T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536703 MW035501
 2020-08-31 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T A696C C3037T G3871T T3931C C6906T A8390G C14408T A17473G C19402T A23403G G24926T C25153T C28977T T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540720
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/England/SHEF-C184F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T C22450T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540744
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/England/SHEF-C96D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540784
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR3987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540785
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR3988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T G1820A A2576T C3037T C5175T C6401T C14408T G15649T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540824
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540825
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21575T C21614T C22227T G22604T A23403G C26801G C27944T G28326T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540826
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540831
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T C14408T A20268G A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540832
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G9278A C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540833
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G26416T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540839
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4154/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T G22604T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540840
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540841
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540844
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540846
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540847
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G G28325T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540851
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540852
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G15906T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540853
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540855
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540861
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G18002T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540866
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540870
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR4205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540872
 2020-08-31 2020-09-21
 United Kingdom hCoV-19/Scotland/EDB7381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T G24755T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541234
 2020-08-31 2020-09-21
 United States hCoV-19/USA/FL-BPHL-1302/2020
 ATTAA1- C241T C1059T C2003T C3037T C10319T C14408T A18424G C21304T A23403G C25276T G25563T G25907T A26148T C27686T C27964T C28472T C28869T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_541443 LR882137
 2020-08-31 2020-09-22
 Switzerland 270194
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A4177G C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541444
 2020-08-31 2020-09-22
 Switzerland hCoV-19/Switzerland/BE-ETHZ-270203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T C13255T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25088T G25563T C25710T C26735T T26876C G28960K G28975C G29399A G29427A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541445 LR882143
 2020-08-31 2020-09-22
 Switzerland 270209
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G428K C3037T AG3082RR G5023R G5063R G5950K G6080A T7248Y T7305K T8041C T9256Y A10064W T10076W G10265A C11758T C14408T A15972G A16352W C19718T T21657W G22381S A22412W A23403G G23593T T28759Y GGG28881AAC A28959W TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541458 LR882142
 2020-08-31 2020-09-22
 Switzerland 270210
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C620Y C635Y C3037T C4927T T7158W T7305K C9693T G9761T T10816A C14408T C15738T C16293Y C18744T T19839C A23087W A23403G C23422T T27384C A27921T GGG28881AAC C28905T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541463 LR882138
 2020-08-31 2020-09-22
 Switzerland 270197
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C A1146R C3037T C6286T C13671Y C14408T C14805T C16049T G17278T AT20284TC G21255C C22227T A23403G C23422Y C26135Y C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541469 LR882146
 2020-08-31 2020-09-22
 Switzerland 270204
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T772C A2869G C3037T G6352T C6445T C10868T T14313C C14408T G15652T G22468T A23403G G23438T C25006T T28772Y GGG28881AAC C29095T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541503 LR882132
 2020-08-31 2020-09-22
 Switzerland 270199
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C A459R A543W C3037T A3305C A5257W C6286T C14408T A16210W G17278K T19218Y G21255C C22227T A22904W A23122M A23403G C25886Y C26801G C27944T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541505 LR882141
 2020-08-31 2020-09-22
 Switzerland 270201
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C1284Y C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541506 LR882148
 2020-08-31 2020-09-22
 Switzerland 270202
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T A3305C C6286T C14408T T19218Y G21255C C22227T A23403G C26801G C27944T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541536 LR882135
 2020-08-31 2020-09-22
 Switzerland 270198
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1437T C1513T C3037T C6286T C11580Y C14408T A16210W G20569K G21255C C22227T G22346K C22377T A23403G C26801G C28706T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541720
 2020-08-31 2020-09-23
 India hCoV-19/India/MH-NIV-186959/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C486G G521A C3037T C5700A C6027T T10387C C14408T C20384T T20949C A23403G C23604A G28209C GGG28881AAC G29737T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_541721
 2020-08-31 2020-09-23
 India hCoV-19/India/MH-NIV-187756/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C5700A A6561G C6681T C14408T T14574A C14670T C18486G T21616C A23403G G23868T GGG28881AAC GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_542062
 2020-08-31 2020-09-23
 United States hCoV-19/USA/NMDOH-2020320036/2020
 ATTAAAGGTTT1- C241T G614A C1059T C3037T G4285T C10319T T11836C C14408T C16877T G20995T A23403G G25563T C27654T C27964T G28851T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_542087
 2020-08-31 2020-09-23
 United States hCoV-19/USA/NMDOH-2020323515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A11991G A12820G C14408T C16762T A17637G C20762T A23403G G25563T C25916T C28887T C29370S TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_547751
 2020-08-31 2020-09-24
 United States hCoV-19/USA/WI-GMF-18003/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T G688T A696C C3037T G3871T T3931C C6285T T10816C C14016T A15609G C19524T C20429T A23403G C28977T G28979T C29733T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547752
 2020-08-31 2020-09-24
 United States hCoV-19/USA/WI-GMF-18031/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T G411A C475T C1059T C3037T C5986T C12754T C14408T A23403G G25563T A28389T C29837T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547753
 2020-08-31 2020-09-24
 United States hCoV-19/USA/WI-GMF-18080/2020
 ATTAAAGGTT1- C241T C475T C1059T C3037T C5986T C12754T C14408T AA21550CT A23403G G25563T A28389T C29837T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547754
 2020-08-31 2020-09-24
 United States hCoV-19/USA/IA-GMF-18219/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A696C C3037T G3871T T3931C C6285T C14016T C14408T C15324T C19524T C20429T A23403G C28977T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549202 MW040630
 2020-08-31 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1420/2020
 AT1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_549203 MW040631
 2020-08-31 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1421/2020
 AT1- C241T C1059T G1298A C3037T C9951T G12694A C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_549204 MW040632
 2020-08-31 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1422/2020
 A1- C241T C2416T C3037T G4288T C14408T C16616T C17746T A23403G G25563T C26885T C27603T C27944T C28887T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_549205 MW040633
 2020-08-31 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1423/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C22594A A23403G G25563T G25907T C27964T C28472T C28869T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549206 MW040634
 2020-08-31 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C3602T C6310T G11596T C12081T C14408T A16455C C16616T G16901A C20740A A23403G G25563T C26885T C27603T C28887T C29353T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549207 MW040635
 2020-08-31 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1425/2020
 AT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C22594A A23403G G25563T G25907T C27964T C28472T C28869T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549208 MW040636
 2020-08-31 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1426/2020
 ATTAAAGGT1- C241T C1059T C3037T C4321T T5573C A10323G C11916T G12160A C14408T G18636A C21057T G22225T A23403G G25563T G26020T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549213 MW040641
 2020-08-31 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1385T G1738T T2222C C3037T G3242A A8842G C11916T C14408T C19269T A23403G G25563T C28087T C28923T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_549214 MW040642
 2020-08-31 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5392T C9214T C9967T C12406T C14408T G15906T C18555T A23403G G25563T C28892T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549332
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB6FD/2020
 C241T T1615C C3037T TTGAAGTGAATAGTT3333- C4686T C7765T C14408T C17690T C18877T G19162T A23403G G25563T C25904T

EPI_ISL_549338
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB6B1/2020
 C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC TG29867WR C29870M A29876M AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_549342
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8775/2020
 C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29706T G29734C A29900R

EPI_ISL_549348
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB727/2020
 C241T C3037T C3267T A3996G C11704T C14408T C18877T C20703T C21034T G22113T C22444T T22882G A23403G G25563T G26173T C26735T G28183T T28277C C28854T

EPI_ISL_549414
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A86C3/2020
 C241T G862A A2151C A2920T C3037T T7767C C8047T A8547T C14408T C17104T A20268G C22879A A23403G G29734C G29745T

EPI_ISL_549415
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A871B/2020
 C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC

EPI_ISL_549416
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8739/2020
 C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T

EPI_ISL_549417
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8757/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_549418
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8766/2020
 C241T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G C29837T

EPI_ISL_549419
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8784/2020
 C241T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G C29837T

EPI_ISL_549420
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C3037T C8683T C14408T G15406T C21637T A23403G C26078T A28169G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_549421
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A87A2/2020
 C241T C3037T T5507A C7113T C9803T G11083T C12493A T14100C C14408T C16349T A20268G T20988C C21614T G21778A A23403G G25290T C28846T C28854T C29167T

EPI_ISL_549422
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A87C0/2020
 C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC

EPI_ISL_549423
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A87DF/2020
 C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC

EPI_ISL_549424
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A87EE/2020
 C241T C3037T T5507A C7113T C9803T G11083T C12493A T14100C C14408T C16349T A20268G T20988C C21614T G21778A A23403G G25290T C28846T C28854T C29167T

EPI_ISL_549425
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A87FD/2020
 C241T C3037T C8683T C14408T G15406T G20616T C21637T A23403G A28169G G28727T GGG28881AAC AAAAA29899-

EPI_ISL_549426
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8809/2020
 C241T C3037T T5507A C7113T C9803T G11083T C12493A T14100C C14408T C16349T A20268G T20988C C21614T G21778A A23403G G25290T C28846T C28854T C29167T

EPI_ISL_549427
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8818/2020
 G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T C29555T G29645T

EPI_ISL_549428
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8845/2020
 G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_549429
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8854/2020
 G204T C241T T445C C3037T C6286T C7926T C9745T T10455G C14408T T17454C G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_549440
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8A5E/2020
 C241T C313T A1305G C2143T C3037T C4234T C8818T C13554T C14408T G17686T C17825T C18252T A23403G T26552C G28396A GGG28881AAC

EPI_ISL_549441
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8A6D/2020
 C241T C3037T C3130T T5507A C7165T C7843T C8950T C12525T C14408T G19648T A19655G A20268G T21158C A23403G C28854T A29617G C29837T

EPI_ISL_549442
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB569/2020
 T13C C241T C313T T1771A C1912T C3037T G4105T G4180T T10453C C11195T C14408T T16993C C21727T A23403G GGG28881AAC

EPI_ISL_549443
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB578/2020
 C241T C1191T C3037T G3251A C12924T C14408T C21575T C21637T A23095C A23403G C23525T A28169G C28863T GGG28881AAC G29781T

EPI_ISL_549444
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCT1- C241T A435G C1437T C3037T C4099T A10323G C11074T G11083T C14408T G19900A A23403G G27467T G27497T GGG28881AAC G29745T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_549445
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB5A5/2020
 C241T C3037T G11230T C13329T C14408T C19688T A23403G T24088C G25617T A26760T GGG28881AAC

EPI_ISL_549446
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB5B4/2020
 AT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_549447
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB5C3/2020
 C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C11758T C13536T C14408T C19554T C22326T A23403G C23731T G24781T C27513T GGG28881AAC

EPI_ISL_549448
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB60C/2020
 C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC AAAAAA29898-

EPI_ISL_549449
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB61B/2020
 C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC

EPI_ISL_549450
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB648/2020
 C241T G1590T C3037T C6196T A11120G C14408T A23403G G25617T GGG28881AAC

EPI_ISL_549451
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB657/2020
 C222T C241T T445C C3037T C6286T G7798T C12213T C14408T T20661C G21255C C22227T A23403G C26801G G28460A C28932T C29366T C29386T G29645T

EPI_ISL_549452
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB666/2020
 C222T C241T T445C C3037T C6286T G7798T C12213T C14408T T20661C G21255C C22227T A23403G C26801G G28460A C28932T C29366T C29386T G29645T

EPI_ISL_549453
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB675/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G G25135T C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_549454
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB6DF/2020
 C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T C29466T A29771G AAAAAAAAAAA29893-

EPI_ISL_549455
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB709/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_549456
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB718/2020
 ATTAAAGGTT1- C241T C3037T G3047A G3053T C4002T G5950T G10097A G13348T C13536T C14408T G19101T G19732T A23403G C23731T GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_549457
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB745/2020
 C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC GA29868KT AA29893RR AA29897RR AA29902-

EPI_ISL_549458
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB772/2020
 C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC

EPI_ISL_549459
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB781/2020
 C241T C904T C1519T C3037T C8683T G12514A A12604C C14408T G15406T C21637T A23403G A28169G GGG28881AAC

EPI_ISL_549536
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/QEUH-99683B/2020
 C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC

EPI_ISL_549813
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D6FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23604M C23730T G25563T G25785C A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549815
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CC1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549817
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D5B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T T953A C3037T G3230T G4076A C9857T T13995C C14408T C18252T A23403G G28396A C28849T GGG28881AAC G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549819
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CE8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549820
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D4E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549832
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D39D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G529T C3037T G4399T C5173T C9120T G12052T C14408T A18496G A23403G G25477A G25913A G28845A TCACCGAGGCCACGCGGAGTACGATCGAGTGTAC29729G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549847
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CEBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T T25813Y A28169G GGG28881AAC G29032R CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549848
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CC48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C19185T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549859
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CE9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C190T C241T C3037T A3786G C5055T G11851T C14408T C14786T G19348T A23403G G24812T C26895T G28817T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549866
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549867
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D62B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G19824T G21255C C22227T G22346T C22377T A23403G C26801G G28655T C28846T C28932T G29645T G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549874
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C C539Y G872T C3037T C3261T T7783C C14408T A15984T G20125A C20946T G21786K C22075T G22484T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549876
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D3AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1659T C3037T C3884T G6446T C9811T C14408T C18877T C20199T C21234A C22713T A23403G G25563T C26139T C26735T T27634C G28975T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549879
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D48B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G G29810T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549880
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D3BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A G20580T C22388T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549883
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D4B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T772C A2869G C3037T G6352T C6445T C10868T C11514T T14313C C14408T G15652T A23403G G23438T C25006T G27632T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549887
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549888
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D63A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T T27336A C27945T G28221T GGG28881AAC C29160T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549897
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D49A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A G29447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549898
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CC2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T G27621T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549900
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G17443T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549904
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D5F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C11747T C14408T G16795T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549906
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D4D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C190T C241T C3037T A3786G C5055T G11851T C14408T C14786T G19348T A23403G G24812T C26895T G28817T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549913
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D755/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T4303C T7783C C14408T A15984T C20946T C22075T A23403G GC25552TT G25599T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549917
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G21641T C22432T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549918
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CECA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549921
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D60D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C1121T A2895G C3037T C6395T C11020T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G C25703T G27561T GGG28881AAC G29315T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549928
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D5D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549930
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D5C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549931
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549933
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D47C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549936
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D6EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T T16926C G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549937
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D6A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G862A A2151C A2920T C3037T T7767C C8047T A8547T C14408T C17104T A20268G C22879A A23403G G29734C G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549970
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6856/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T T2533C C3037T T3873G A8031G G8371T G11083T C14408T C17746T G19962T C22477T G23126T A23403G G25563T C26340T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550058
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A67E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC T28981C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550062
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A67B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC T28981C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550073
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8AD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4927T C9693T G9761T C14408T C18744T T19839C A23403G C23422T T27384C A27921T GGG28881AAC C28905T G29140C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550075
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6829/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T T2533C C3037T T3873G G8371T G11083T C14408T C17746T G19962T C22477T G23126T A23403G G25563T C26340T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550077
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8C94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550104
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6E09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25456T G25563T C25710T C26735T T26876C C26964T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550107
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8AF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550111
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8B2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1194T C3037T G3239A G7042T C9541T C10369T C14408T C15324T T17142A T17688C T17748C G21334T A23403G G24038T C25549T G28027T G28655A G28881A CGATC29750- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550120
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8B3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T C18032T T20273C C20759T A23403G GGG28881AAC G29557T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550123
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8AE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550124
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8AB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T G19999K C21855T A23403G A25505G G25906C G25996T C28651T C28869T CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_550135
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6865/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T A6474T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC T28981C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550169
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A67C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T T2533C C3037T T3873G G8371T G11083T C14408T C17746T G19962T C22477T G23126T A23403G G25563T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550212
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8C0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550223
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C882T C2416T T2533C C3037T T3873G G8371T G11083T C14408T C17746T G19962T C22477T G23126T A23403G G25563T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550243
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A681A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635Y C882T C2416T T2533C C3037T T3873G G8371T G11083T C14408T C14621Y C17746T G19962T C22477T G23126T A23403G C24213Y G25563T G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550524
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E3BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T C6336T G11132T C14408T G21255C C22227T A23403G G25987T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550525
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DDCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G A25697G C26060T C28846T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550528
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E2BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9042T C14408T A23403G G26918T C27297T C27610T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550533
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DDBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T C18377T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550534
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2151C A2920T C3037T C7164T T7767C C8047T A8547T C14408T C17104T A20268G C22879A A23403G G29734C G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550539
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E3E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C12242T C14408T G21255C C22060T C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550541
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DBD1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G7037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550545
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10265A C11074T G11083T C14408T C15720T A15972G G16912T C19718T A23403G G26700T T28759C GGG28881AAC G29348T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550547
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E1B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T C20823T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550548
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DCCF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550549
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DEBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550551
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99C9D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C25916Y C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550553
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T C11455T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550560
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550563
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DB3B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1154G C3037T T5785A C14408T G15705A C18877T A23403G G25563T G25687T G27598T G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550570
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E53C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27364C GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550575
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99C9C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G A27472G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550578
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CAE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C25571A C26464T GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550591
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CA11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C3096T C13665T C14408T C15960T G16741T G20131A G20580T C22388T A23403G C24844A G25166C C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550594
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E0D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A15945G A16889G G17019T C18877T G21770T C22432T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550596
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DE14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C11941T C14408T C15738T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550597
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DCB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T G21123T G21295T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550601
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DBC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G7037T G8371T C9430T C14408T A15477T C18395T T20551Y AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550604
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C89F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550607
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C97E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T G6337T C7303T C7564T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T C16293T C16877T C17528A G21123T G21800T A23403G G25563T T27622C G27632T C27804T G27906T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550609
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T595C C3037T G10265A G11083T C14408T C14697T C15720T A15972G G16912T C19718T A23403G T25653C G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550611
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C7788T C10868T G11083T C14408T G15652T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550616
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T C26542T T26972C C27800A G29706T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550618
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CB4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550622
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C16394T C17104T G18028T A20268G TACATG21765- C22127T C22879A A23403G G23876A T24910C G25947T C26681T T26972C C27800A C29274T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550625
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DDF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1606C C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550629
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E5D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A G16137A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550630
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DE50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550631
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CA20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C245Y T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550632
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550636
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DC92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G6532T G11083T G14202T C14408T G18972A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550637
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10105K A11782G C14408T T21570G C21575T A23403G T25473C C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550642
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E1DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T T365A C3037T C5622T G8017T C8208T G11042T G11083T C11208T A12097G C14408T A23403G G25217T G25489T G26918T T28516C AG28877TC GGG28881AAC C29144T G29745T C29754A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550646
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99CA8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T9115A G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550648
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E5A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T G11761T C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550649
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T595C C3037T G10265A G11083T C14408T C14697T C15720T A15972G G16912T C19718T A23403G T25653C G26700T T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550651
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DDAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T G10870T C14408T C15324T A23403G C25549T C28887T G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550653
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E4F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C710A C1191T A2550C C3037T G3251A C12924T C14408T C21575T C21637T A23403G C23525T A28169G GGG28881AAC C28905T G29781T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550655
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E36F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T A1163T C3037T T3256C C5622T C6638T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T C29466T ACATTTTCACCGAGGCCACGCGGAGTACG29723- A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550658
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E2CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9042T C14408T A23403G G26918T C27297T C27610T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550659
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T T27905W GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550662
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T C14408T C17104T A20268G C22879A A23403G G23501T C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550666
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E55A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550668
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550670
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DDDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G15327T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550672
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99D430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1722T C2509T C3037T C6286T C6538T C14408T G21255C C22227T G22468T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550673
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99DED8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T C17822T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550674
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DF7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1162G C3037T C4002T G10097A G11335T C12513T C13536T C14408T T18033C C22747T A23403G C23731T C25624T C28432T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550676
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DDEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550678
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C1121T A2895G C3037T C6395T C11020T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G A23998T C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550679
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CA3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C207T C241T G625A C3037T C4002T G5950T G10097A C13536T C14408T A18259G G19732T G22332A A23403G C23731T G26730T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550685
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T G21724C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550686
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E1ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1408T C3037T G3053T C4002T G5950T C8240T G10097A C11620T C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550690
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DEC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T G252T T445C C3037T C6286T C14408T C15480T C20703T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29543T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550693
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CAB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550701
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E0B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T G1598A C3037T C4754Y C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550702
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CB2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2749T C3037T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550706
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E5E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T595C C3037T G10265A G11083T C14408T C14697T C15720T A15972G G16912T C19718T A23403G T25653C G26700T T28759C GGG28881AAC C29095T G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550707
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DE32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2880T C3037T A4044C C6896T A8413G A10260G A10880G C14408T G19086T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550708
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E29F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T A2491G C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550712
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CB3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C17738T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550714
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E52D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T4303C T7783C C14408T A15984T C18167Y C20946T C22075T A23403G GC25552TT C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550720
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E38D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C7840T G10642T C11195T A11867T C14408T C20148T A23403G G24751A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550722
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E2AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550724
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DD53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2305T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C T25220A G25494T T26972C C27800A G29706T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550725
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T T5408C C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550728
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C16394T C17104T G18028T A20268G TACATG21765- C22127T C22879A A23403G G23876A T24910C G25947T T26972C C27800A C29274T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550729
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99C9BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G A27472G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550734
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E5C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1154G C3037T T5785A C14408T G15705A A17322R C18877T A23403G G25563T G25687T G27598T G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550738
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99C905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550742
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CAF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550744
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DCDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C11514T C12357T T14313C C14408T G15652T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550747
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E39C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550749
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DE6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550752
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DF99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C843T C3037T A5598G G9928T G11516T C14408T T21976C A23403G G28233T GGG28881AAC C29025T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550760
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E2F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C24370Y C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550767
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-99CA7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C T3766C T4346G C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550768
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DF02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1113T C3037T C4543T G5629T C9286T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27401C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550769
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DE41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T C19140T A19650G G21255C G21538A A22101G A23403G C26645T GGG28881AAC T29832C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550773
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E0E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T C20823T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550776
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99DD62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25455T C25511T G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550777
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CAC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550779
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E54B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550780
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E1FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7165T C7528T C14408T C15830Y C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550784
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E0FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550785
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99CB0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T C22227T A23403G C23525T C23991T A28169G GGG28881AAC G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550786
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-99E208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550794
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550795
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9F30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11344Y C11497T G13993T C14408T G15766T A16889G G16943T G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550799
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9F7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4893T T7767C C7844T C8047T C14408T C17104T G19879A A20268G C22879A A23403G T24925C C25433T C27800A C27920T G29734C C29762T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550800
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T T12226C C14408T C16362T C19164T G21255C G21786T C22227T A23403G C24904T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550801
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA5F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T G4960T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550804
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA98C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T A1305G C2143T C3037T C4234T C8818T C13554T C14408T G17686T C17825T C18252T A23403G T26552C G28396A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550809
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA8F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5704T T7767C C8047T C9430T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T A28855G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550813
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA0A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G10271A G11083T G14202T C14408T G19542T C19718T C22388T A23403G G25424C C26060T C27970G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550815
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550821
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAA89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2407T C3037T C3602T G4442T C6525T C6941T G11761T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550827
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA99B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C T834C C3037T C6286T C14408T C19586T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550830
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAB0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550831
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9F8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3790G C5467T G8131T T8365C C14408T T17796C C18928T C19454T C21811T A22234G A23403G C27889T A28296C A28342T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550833
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAB2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1348T C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550834
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9AA7EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550843
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAB1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C4158T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G26775T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550846
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9AA7DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550852
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9FF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T T6697Y C11396T C12439T C14408T C15045T G21255C C21575Y C21614T C22227T A23403G C26801G C27944T C28776T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550854
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAC92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550863
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAA3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T T22673C A23403G C26801G C27944T C28311T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550866
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A98CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550867
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA97D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550871
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA02D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550874
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T G3871T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550879
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G A28552T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550880
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA01E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T T16993C G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550881
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA89E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T403C C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550883
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA8DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G5704T T7767C C8047T C9430T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T A28855G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550896
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550899
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA7CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1479T C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C25797A T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550903
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA00F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T C16049Y G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550906
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9F6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9096T A11923G C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550908
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAA6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6031Y C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550910
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA03C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550913
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1635M C3037T C4406T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550921
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAAE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T C21005T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550923
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA96E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C G793R C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550926
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9914/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C25427T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550934
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA913/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28045T C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550939
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9F5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T C20823T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550941
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C678T C3037T C3885T C7600T A10260G A10880G G14209T C14408T A23403G GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550951
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AABC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T G252T T445C C3037T C6286T C14408T C15480T C20703T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29543T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550956
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAA7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1550A C3037T G3239A C6606T G7042T C9541T C9857T C14408T C15324T T17142A T17688C G21334T A23403G C25549T C27920T G28027T C28054T G28655A G28881A C29675T C29802T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550957
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA870/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1681T C3037T A9433T G10265A C10369T C10789T A14107G C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550960
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T T12226C C14408T C19164T G21255C G21786T C22227T A23403G C24904T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550963
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A98BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11344Y C11497T G13993T C14408T G15766T A16889G G16943T G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550973
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA9AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550980
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA8AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550982
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA816/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T C26542T T26972C C27800A G29706T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550987
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9AAD62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550998
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A971A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T C14802A C21855T A23403G T25202K A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551000
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A91EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G2755T C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551009
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB0D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C19859T C21575T C21637T C22227T A23403G C23525T C26895Y A28169G A28499G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551010
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB2DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551011
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAF20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26735T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551012
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB37E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T G7526A A10912G C14408T G21255C C22227T A23403G C26801G C27944T G28378T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551017
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C16260T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551024
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A91FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T G22349R A23403G A28169G GGG28881AAC G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551026
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1191T T5448C C5544T C8782T G11230T A11908G C18486T A23476T T28144C G28167A G28878A C29730- G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551027
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A962C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9733T C14408T C18032T T20273C C20759T A23403G GGG28881AAC G29557T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551031
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB43F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551033
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAF7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T G27621T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551040
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB38D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551043
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A920A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551049
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A96E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T T445C C3037T C4815T C6286T C14408T G21255C C22227T A23403G T26491C C26801G C28932T A29500G G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551053
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551056
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB3C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5950T T7767C C8047T G12988T C14408T G15598A C17104T GG18027TT C19032T A20268G TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551060
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551061
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T T26446A C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551066
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB11A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551068
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB01D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1599T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T CAACAA28988- C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551069
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3818G C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551071
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551073
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T T19344C G19816T G22468T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551075
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB1FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T595C C3037T A6029G A8244G G8408A G12191T C14408T C19488T C21622T C21658Y A23403G T26171A C28471Y C28500T GGG28881AAC G29254A C29409T G29474T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551076
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C6449Y C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551080
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C T3766C T4346G C5622T C10340T G11083T G14202T C14408T G19542T C19718T C22388T A23403G T25202K C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551084
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T T4118C C5884T C9430T C10582T C12823T C14408T C18377Y A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551086
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB2CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T T23062C A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551095
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1191T T5448C C5544T C8326Y C8782T G11083T G11230T A11908G C18486T A23476T T28144C G28167A G28878A C29730- G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551098
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G T25202K C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551099
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB4D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27224G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551101
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5761A C9430T G10540T C12823T C14408T G19861T C22480T A23403G C24418T C24865T C28311T GGG28881AAC G28980T C29580T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551107
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A915G C1473T C3037T C9344T C12733T C14408T A15677G C16586T C17639T G20623T G21119T C21742T A23403G G26746T T27801C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551109
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A91B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551110
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A97CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2612A C3037T T7767C C8047T A10323G C14408T C17104T A20268G C22879A A23403G -25700CCC C25904T C27654Y C27800A C29686T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551112
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9219/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551113
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB39C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C190T C241T C3037T A3786G C5055T G11851T C14408T C14786T G19348T G19398K A23403G G24812T C26895T G28817T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551115
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8FAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C11514T T14313C C14408T G15652T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551116
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551118
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551120
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T A15779G C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551122
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A963B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G9130T C14408T A23403G G25563T T27319C G28487A C28868T GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551124
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAFE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18568T C18877T C22444T A23403G G25563T C26735T G27852T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551129
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G T25202K A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551130
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551131
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB2EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551142
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB10B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551143
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A961D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T A4576T T4579A C6286T C14408T G21255C C22227T A23403G C23595T C26801G C27406T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551151
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB44E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4291T C8683T C14408T G15406T C16260T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551154
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551173
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB2BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T A15681T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551175
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9A20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551179
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB4F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G14500T C18129T C18788T G19648T A20268G T21158C C21642T A23403G C28854T A29617G A29731G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551194
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C16946T C21575T C21637T C22227T A23403G C23525T C25603T G26062T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551197
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551198
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB46C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T G25641T C25916T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551199
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C1191T T5448C C5544T C8782T G11230T A11908G C18486T A23476T T28144C G28167A G28878A C29730- G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551202
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A957A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C1288T C3037T C8683T C14408T G15406T C21637T G21785C T23284C A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551205
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A99C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C619T C3037T G3230T C7224T C13008T C14408T T14808C C18788T A21098T T23287C A23403G T25202K C28603T GGG28881AAC G28904A G29001T G29279T C29754T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551210
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G526T C2973T C3037T G10870T C14408T C15324T A23403G T25202K C25549T C28887T G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551217
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB0FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G542A C2536T C3037T G3239A G7042T A9737G C14408T C14922T C15324T T17142A T17688C C19524T G20352T G20572A G21334T A23403G G28655A G28881A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551220
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A91D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G521T C3037T C5142T C14408T A16682G T18228C C18877T A23403G G25552T A25897G C28332T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551222
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A904C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C5144T C6286T C11396T C14408T G21255C C21614T G22205C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551229
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB45D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T T25202K A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551233
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1385T C3037T C11208T C14408T T20653C C21637T A23403G G24368T G27376C A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551248
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A99BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815Y C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A G29300T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551252
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A96FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T T19344C G19816T G22468T A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551253
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB47B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551255
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551257
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A97A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2531T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C A27399R C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551259
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB3BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551260
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AB4A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551277
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1313G G2764T C3037T C3602T C6941T T14332A C14408T C15324T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559841
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF44A/2020
 ATTAAAGGTTTA1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G G25987T T26609C C26801G A27609C C28932T G29645T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_559851
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF5DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAAC1- C241T C2536T C3037T C14408T G15438T G21920R A23403G C25207T C25665T T26160C G26918T G27505T C28453T GGG28881AAC T29464C AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_559984
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-996798/2020
 C241T C3037T C11514T C13168T C14408T C18877T C22444T A23403G G24764T G25563T C26735T C27059T G27806T C28854T

EPI_ISL_559985
 2020-08-31 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9967F2/2020
 C241T C2706T C3037T C4084T C14408T A20268G A23403G C25731T C28833T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_562702
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC11540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TTT27792- GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562709
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC10376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562713
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC10677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562714
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC10693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G C25728Y GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_562715
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC10776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G C25546Y GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_562853
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC10285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_562864
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC10308/2020
 ATTA1- C241T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_562871
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC10323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C2508Y C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G C28256Y GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_562917
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC10455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C9561T C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562936
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC10499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C745T A1163T A2251G C2488T C3037T T7540C G8618R C14408T G16647T C18086Y C18555T C22480T G22992A G23401A A23403G C27752T T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562939
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC10511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T21387W G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563002
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC10633/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G C28278Y GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563065
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC10743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C G11335T C14408T G16647T C18555T T21369C G22992A C23380Y G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563082
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC10773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563087
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC10782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C920T A1163T C3037T T7540C T11449K C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_563253
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC11112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C15324T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563257
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC11120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C9893T C14408T C14768T G16647T C18555T C18657T A21137G G22992A G23401A A23403G T23677A C23895T C26801T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563289
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC11188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T G2177R C3037T T7540C C7874T T10342C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563398
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC11501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T T15102G G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563399
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC11502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18814T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563404
 2020-08-31 2020-09-30
 Australia hCoV-19/Australia/VIC11535/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C9996T C14408T G16647T C17135T C18555T G22927T G22992A G23401A A23403G A28416T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566576
 2020-08-31 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1CC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5654T C6840G C9857T C14408T G22021T A23403G T28031C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

MW023495
 2020-08-31 2020-09-21
 United States SARS-CoV-2/human/USA/FL-BPHL-1302/2020
 ATTAA1- C241T C1059T C2003T C3037T C10319T C14408T A18424G C21304T A23403G C25276T G25563T G25907T A26148T C27686T C27964T C28472T C28869T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

MT981098
 2020-08-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1232/2020
 A1- C241T C1710T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T G28939T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

MT981099
 2020-08-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1108T C1710T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T G29868A C29870A

MT981100
 2020-08-xx 2020-09-08
 United States SARS-CoV-2/human/USA/VA-DCLS-1235/2020
 ATTA1- C241T C1710T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T

EPI_ISL_529638
 2020-09-01 2020-09-10
 United Kingdom hCoV-19/England/BIRM-62A86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T G27602T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529639
 2020-09-01 2020-09-10
 United Kingdom hCoV-19/England/BIRM-62AA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529640
 2020-09-01 2020-09-10
 United Kingdom hCoV-19/England/BIRM-62AB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3152A G4255A G4510T C5884T C6983T C11308T C13019T C14408T A22155G A23403G GGG28881AAC C29353T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530339
 2020-09-01 2020-09-11
 Australia hCoV-19/Australia/NSW2749/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8950T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24764T C26801T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_536661 MW035459
 2020-09-01 2020-09-16
 United States SARS-CoV-2/human/USA/NY-UW-1289/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536664 MW035462
 2020-09-01 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T A3262G T3745C C11674T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536665 MW035463
 2020-09-01 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T G22199T A23403G A25864G T27901C G28027T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536667 MW035465
 2020-09-01 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1824T T3011C C3037T C5100T C6982T C11758T C14408T C19718T G22205T A23403G G24933T C25919T T27869C T28853G C29149T C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536674 MW035472
 2020-09-01 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1302/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T A3262G T3745C C11674T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536676 MW035474
 2020-09-01 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T G3433T T3745C C9598T C10029T C11674T C11956T C12025T C14408T C19185T T19839C A23403G C23707T G26620T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540139
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A43C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7113T C9803T G11083T C12493A T14100C C14408T C16349T A20268G T20988C C21614T G21778A A23403G G25290T C28846T C28854T C29167T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540140
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C657T A1371G C1385T C3037T C9532T C11224T C13536T C14358T C14408T G14528A C16323T C18747T G18816T A19175C A20268G C22987T A23403G C27092Y C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540141
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4533/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540142
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A42F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540143
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4490/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T T5507A G11083T C14408T A20268G C21364T C21614T A23403G C24700A G25052A C25484Y G25660T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540144
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4603/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T A9970G C14408T G15406T G20616T C21637T A23403G A28169G G28727T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540145
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A42B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540146
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A40E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540147
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A413F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T C4002T A9433T G10265A C14408T G15380T C19343T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540148
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C6033T C13724T C14408T A23403G G25617T C28435T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540150
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A3F54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540151
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A42C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G3328T G4006T C5170T C6286T G11132T C14408T G18105C G21255C C22227T A23403G C26801G G27967T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540152
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A45CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540154
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A40BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T A29697T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540155
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A425A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G17246R G19254T T19893C A21137G A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540157
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A43FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540159
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A406F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G6943T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540160
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A467C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1376T T2244C C3037T G11083K C13095T C14408T T14709C C18032T C21304A A23403G C23413T C26010T C28868T GGG28881AAC G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540162
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A41C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1190T C3037T T5507A C7299T C10448T C11074T G11083T C14408T A20268G C21614T A23403G C27513T C28603T C28854T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540163
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A42E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T A9433T C9561T G10265A C14408T G15380T A19650G A23403G G23621T C25919T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540164
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A40D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540165
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A3FBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540166
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A43DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C10138T C12525T C14408T G19648T A20268G T21158C C23320T A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540167
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G3328T G4006T C5170T C6286T G11132T C14408T G18105C G21255C C22227T A23403G C26801G G27967T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540168
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10885C G11230T C11471T C14408T A23403G T24088C G25617T C27494T G28655A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540169
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A459D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540170
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A466D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540171
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540172
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A468B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T G27621T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540173
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C2156T C3037T C6286T A11794G C14408T G21255C C21614T C21714T C22227T A23403G G25690T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540174
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A418A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T A9433T C9561T G10265A C14408T G15380T A19650G A23403G G23621T C25919T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540175
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T T5527C C6286T G11132T C14408T C20104T G21255C C22227T A23403G T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540176
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A41B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T G27621T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540177
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T C4002T A9433T G10265A C14408T G15380T G15439A A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540179
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A46A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C9110T C14408T G21255C C22227T A23403G C24463T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540180
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A475B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540181
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7113T C9803T G11083T C12493A T14100C C14408T C16349T A20268G T20988C C21614T G21778A A23403G G25290T C28846T C28854T C29167T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540182
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C782T C1059T G1210T C3037T C4455T C7768T A8773G C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540183
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4445/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T A12529T C14408T G21255C C21614T C22227T A23403G T24769C C25460T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540184
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A424B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540185
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C10138T C12525T C14408T G19648T A20268G T21158C C23320T A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540186
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540187
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C2156T C3037T C6286T A11794R C14408T G21255C C21614T C21714T C22227T A23403G G25690T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540188
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A44FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T G29468T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540189
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T A29697T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540191
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A44AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540192
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4542/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T C21614T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540193
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A41E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C8950T G11083T G14202T C14408T C17123T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540194
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540195
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28093T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540196
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A416C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9634T C14408T A23403G A27932G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540197
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G G27754T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540198
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4630/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G11083T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540199
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A3FAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T T20349Y A23403G T24088C C25572T G25617T A26760T C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540200
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A44DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540201
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A40F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540202
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A414E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T A8086G A9433T TAT9858- G10265A C12919T C14408T A19650G C22978T A23403G G24193T T24499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540203
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A45D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATG518- G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540204
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A44BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G G23612A C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540205
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A408D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540206
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A43EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T G8258K T10453C C11195T C11572T C14408T C19718T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540207
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4621/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C8905T C10207T C14408T G21255C C22227T A23403G C25703T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540208
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A3FEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C6033T C14408T A23403G G25617T C28435T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540209
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A40C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T C19524T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540210
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A457F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66A C241T C782T C1059T G1210T C3037T C4455T C7768T A8773G C9073Y C11563Y C11916T C14408T C17304T C18998T A23403G T24805C G25563T C26270T G29540A A29805G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540211
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A3FDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540212
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A43B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4105T G4180T T10453C C11195T C11572T C14408T C19718T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540213
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T C5833M G5950T G10097A C13536T C14408T G19732T A23403G C23731T C28411T GGG28881AAC G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540214
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A3FFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C6033T C14408T C14697Y A23403G G25617T C28435T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540215
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T G27621T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540216
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A469A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T G27621T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540218
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T C17766T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540219
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C2091T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540221
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A45E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATG518- G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540222
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A41A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C14408T G14500T C18129T C18788T G19648T A20268G T21158C C21642T A23403G C28854T A29617G A29731G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540223
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A42D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15342T C15981T T18488C C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540224
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4612/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540225
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A42A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540226
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A422D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G3328T G4006T C5170T C6286T G11132T C14408T G18105C G21255C C22227T A23403G C26801G G27967T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540228
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A4551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C10138T C12525T C14408T G19648T A20268G T21158C C23320T A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540229
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A423C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540230
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A407E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540231
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/QEUH-9A44EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G G27463K A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540753
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/England/SHEF-CB03E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C8905T C10207T C14408T G21255C C22227T A23403G C25703T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540786
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR3989/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C8123T C14408T G21255C C21614T C22227T A23403G C26078T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540787
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR3990/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540791
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR3994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540899
 2020-09-01 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A15B/2020
 ATTAA1- C241T G768A A1163T C3037T T3256C A4801G C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_541401
 2020-09-01 2020-09-22
 Switzerland hCoV-19/Switzerland/AG-ETHZ-270037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1437T C1513T C3037T C6286T G11521T C14408T G21255C C22227T G22346K C22377T A23403G C26801G C28706T C28932T G29474T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541402 LR882038
 2020-09-01 2020-09-22
 Switzerland 270046
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2659T C3037T G9130T G9871T A12825G C14408T A23403G G26779T T27319C G28487A C28868T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541417
 2020-09-01 2020-09-22
 Switzerland hCoV-19/Switzerland/BE-ETHZ-270048/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C17850Y G18534T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541418 LR882048
 2020-09-01 2020-09-22
 Switzerland 270053
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C11919Y G12031R C14408T G20398A T20661C G21255C G21468T C22227T A23403G G25816C C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541419 LR882087
 2020-09-01 2020-09-22
 Switzerland 270054
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C2939Y C3037T C6286T C13671Y C14408T C14805T G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T G28703C C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541470 LR882046
 2020-09-01 2020-09-22
 Switzerland 270050
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T A7304W G7889K T7904K T7943W A9897W T10076W C14408T T20661C G21255C G21468T T21473Y C21658M C22227T A22401R A22460R T22516W A23403G A25079R C26801G G28781R C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541513 LR882037
 2020-09-01 2020-09-22
 Switzerland 270047
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T2584Y C3037T A11782G C14408T T21570G C21575T A23403G T25473C C28253T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541514
 2020-09-01 2020-09-22
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-270051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G533S C589Y C683Y A2905R C2925Y C3037T G5950K G6080A T7248W T8041C C9996Y C10022Y G10265A C11758T C14408T A15972G C19718T GT21538KK A21650R AG22453RR A23403G G23593T T28759Y GGG28881AAC C29769Y A29844M C29854M G29862K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_542063
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020320930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAA1- C241T C1059T C1348T C3037T C10319T C11919T A12737G C14408T A18424G G18903A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_542065
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020320942/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C913T C1059T C3037T T6118G C6896T C7279T C10319T G11083T T13839C C14408T C16308T C16694T C21859T G22992T A23403G G25563T A25986T G26109T A26990G C27641T C27964T

EPI_ISL_542066
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020320943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C913T C1059T C3037T T6118G C6896T C7279T C10319T G11083T T13839C C14408T C16308T C16694T C21859T G22992T A23403G G25563T A25986T G26109T A26990G C27641T C27964T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_542067
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020320960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1514T C3037T T4885C C7119T C7528T C7948T A10323G C14408T A18751G G19684T C20148T G21268T TT22965CC A23403G C24865T G25563T C28819T C29585T

EPI_ISL_542069
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020321619/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T G8264T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C26060T C27964T C28472T C28869T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_542070
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020321648/2020
 ATTAAAGGTT1- C241T C1059T C3037T C5832T C14403T C14408T C16127T C16293T C21575T T21656C G22021A A23403G G25563T C26912T C28887T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_542071
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020321813/2020
 ATTAAAGGTTTATAC1- C241T T721C C1059T C3037T C14408T G22021A A23403G G25563T T25969C C28887T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_542073
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020321845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1288T C1670T C3037T C12459T C12513T C14408T C19662T A20268G A23403G G25483A A28483G C28854T T29661G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_542074
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020321846/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1288T C1670T C3037T C12459T C12513T C14408T C19662T A20268G A23403G G25483A A28483G C28854T T29661G

EPI_ISL_542077
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020322105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T T2988Y C3037T C5835T G8264T G9130T C10319T C14408T A18424G C21058Y C21304T A23403G C23664Y G25563T G25720T G25907T C26060T C27964T C28472T C28869T

EPI_ISL_542079
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020322124/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2675T C3037T G8264T C10319T C14408T A18424G C21304T G22103A A23403G G25563T G25907T C26060T G26227T C27964T C28472T C28869T G29759T

EPI_ISL_542080
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020322125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C2675T C3037T G8264T C10319T C14408T A18424G C21304T G22103A A23403G G25563T G25907T C26060T G26227T C27964T C28472T C28869T G29759T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_542082
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020322173/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C11758T T12133C C14408T C15738T C16260T A23403G C23625T C24517T G25563T G27955A C28311T C28821A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_542083
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020322270/2020
 ATTAAAGG1- C241T G2282A C3037T C9170T C9491Y T9742C C10002T C10335T G12052T C13684T C14408T C17639T G19656A A23403G C25624T C28000T C29614T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_542084
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020322355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C11758T T12133C C14408T C15738T C16260T A23403G C23625T C24517T G25563T G27955A C28821A

EPI_ISL_542086
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020323484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C5310T C9565T C9988T C11747T C13297T C13994T C14408T C21618G G21800A A23403G G25563T C26335T C27964T G28621T A29615T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_542088
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020323670/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C9131T C10319T C14408T C15928T A18424G C21304T A23403G G23868C G25563T G25907T G27214A G27841T C27964T C28472T C28869T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_542089
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020323679/2020
 ATTA1- C241T C1059T C3037T A12820G C12880T C14408T GC15016TT C16762T A17637G C17746T G20069T G20670A C20762T C21161T A23403G G25563T C28887T

EPI_ISL_542090
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020323686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T A12820G C12880T C14408T GC15016TT C16762T A17637G C17746T G20069T G20670A C20762T C21161T A23403G G25563T C28887T

EPI_ISL_542091
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020324000/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T G4300T T14191C C14408T T19839C A21551T A23403G A23756G G25726T A28154G GGG28881AAC G29260T G29648T C29835T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_542093
 2020-09-01 2020-09-23
 United States hCoV-19/USA/NMDOH-2020324052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G4285T C10319T T11836C C14408T C16394T C18167T A23403G G25563T C27654T C27964T G28851T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_547755
 2020-09-01 2020-09-24
 United States hCoV-19/USA/WI-GMF-18264/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C475T C1059T C3037T A4638G C5986T C12754T C14408T A23403G G25563T A28389T C29837T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547756
 2020-09-01 2020-09-24
 United States hCoV-19/USA/WI-GMF-18277/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C4686T G8314A A10323G G11083T C14408T T15276A A23403G G25563T G28842T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_547757
 2020-09-01 2020-09-24
 United States hCoV-19/USA/WI-GMF-18312/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C19718T C21304T A23403G G25563T G25598T G25907T C27964T C28869T C29666T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547758
 2020-09-01 2020-09-24
 United States hCoV-19/USA/IA-GMF-18345/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A696C C3037T G3871T T3931C C6285T C14016T C14408T C15324T C19524T C20429T A23403G C24130T C28977T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_548067
 2020-09-01 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549201 MW040629
 2020-09-01 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1419/2020
 ATTA1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549210 MW040638
 2020-09-01 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C3634T C10319T C14408T A18424G C21304T C22594A A23403G G25563T G25907T C27964T C28472T C28869T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549212 MW040640
 2020-09-01 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1430/2020
 ATTA1- C241T G1961A C3037T C9360T C14408T A20268G C22713T A23403G T24076C T24869C C26735T C28854T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549329
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTAT1- C241T C3037T C4927T C9693T G9761T C14408T C18744T T19839C A21270G A23403G C23422T GGG28881AAC C28905T T29726- AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_549333
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8872/2020
 TC240- C3037T C4543T G5629T G9526T C11497T C12439T G13993T C14408T G15766T A16889G G17019T C18877T G22487C G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A

EPI_ISL_549389
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/CAMB-1B5D8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T G7016A C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549430
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A88DC/2020
 C241T C3037T T5338C G13004T C14408T C18486T A20268G T22162C A23403G C28854T

EPI_ISL_549431
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A88EB/2020
 C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A AA29902-

EPI_ISL_549432
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8906/2020
 C241T T445C C3037T G4006T C5170T C6286T C7047A G11132T C14408T G21255C C22227T A23403G G24933T G26227T T26609C C26801G C28313T C28932T G29645T

EPI_ISL_549433
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8915/2020
 C241T C3037T C4084T C12809T C14408T G18105T T21418C G21538T A23403G T24995C C25714T GGG28881AAC AAAAAAA29897-

EPI_ISL_549434
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8933/2020
 C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC

EPI_ISL_549435
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8942/2020
 C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T

EPI_ISL_549436
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8951/2020
 C241T C904T C3037T C5365T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC

EPI_ISL_549437
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A899D/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T G20489T C22388T A23403G G25494T C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_549438
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8A03/2020
 C241T C3037T G3152A G4255A G4510T C5884T C6983T C11308T C13019T C14408T A22155G A23403G GGG28881AAC C29353T A29869T AAAAAAAAAAAA29892-

EPI_ISL_549439
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8A12/2020
 C241T A1163T C3037T G3692T G13723T C14408T G16204C A23209T A23403G A25615G GGG28881AAC C29754T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_549517
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/NOTT-1135A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549949
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8C76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549961
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549966
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C6968T C14408T A15984T G17058T C20946T C23248T A23403G C26750T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549967
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549971
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8B6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549973
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1968T C3037T C3373A C9733T C14408T G15202T T20273C G20679T C20759T C21727T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549986
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8BD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549987
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A68ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1722T C2509T C3037T C6286T C6538T C14408T G21255C C22227T G22468T A23403G C23638T C26801G C27944T C28932T G29645T CCACGCGGAGTACGATCGAGTGTA29738- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549998
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8D64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T G4105T C14408T A20268G A23403G C25731T C27600T C28776T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549999
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6E72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550000
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A67A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550002
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6944/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T C5866T G6341A G6352T C10776T ATT12627- C14120T C14408T C15540T G17019T A23403G C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550006
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6E45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2407T C3037T C3602T G4442T C6525T C6941T G11761T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550015
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A68CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550016
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550018
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A66A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550020
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A66E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1722T C2509T C3037T C6286T C6538T C14408T G21255C C22227T G22468T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550024
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8BA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T G16871A A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550039
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6689/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2788T C3037T C3373A G10642T C11195T C13536T C14408T C20148T G21987A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550050
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8C85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550053
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8CA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G3230T C6327T C13005T C14408T C18252T A23403G G28396A C28849T GGG28881AAC G29260T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550060
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204C C241T C1288T C3037T T3163C C4345T C9836T C12053T C14408T G22468T A23403G T25150C T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550061
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8D37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T G4105T C14408T A20268G A23403G C25731T C27600T C28776T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550063
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8BB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A25020T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550067
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8D46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A21137G A21366G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550090
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A670E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T T445C C3037T C4815T C6286T C14408T G21255C C22227T A23403G T26491C C26801G C28932T A29500G G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550091
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6E81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T G3065R C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T C29555T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550101
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8B79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C12400Y C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550103
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6935/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T C5866T G6341A G6352T C10776T ATT12627- C14120T C14408T C15540T G17019T A23403G C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550105
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6795/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T C10376T A10978T C14408T C17104T A19958G A20268G T20799C C22879A A23403G G24770T C26681T C28507T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550110
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6971/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550114
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A671D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T T445C C3037T C4815T C6286T C14408T G21255C C22227T A23403G G25302T T26491C C26801G C28932T A29500G G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550116
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G C23709Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550117
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A68FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T T16926C G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550133
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550150
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6E63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550161
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6E36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C7935T G9802T G12067T C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550166
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A674A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C100Y C203Y C241T T445C C1513T C3037T C6286T C14408T C18647Y G19824T G21255C C22227T G22346T C22377T A23403G C26801G C28253T C28706Y C28846T C28932T G29645T G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550174
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550178
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8CFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550185
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A8A30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C11620T C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550195
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8B88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550215
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8D55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A21137G A21366G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550216
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8C49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550217
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A66F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T G19816T A23403G G25471T C25810T GGG28881AAC G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550221
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T G6341A ATT12627- C14120T C14408T C15540T G17019T C19884T A23403G C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550228
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6E27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1684T C3037T C4456T C6286T C11950T C14408T A18861G C19017T T19425C C22227T A23403G A24484G C25665T C26801G G28404K C28932T C29171T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550229
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A68DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C G839R C3037T C6286T C14408T G21255C C22227T A23403G G24098T TT26485- C26801G G27877T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550241
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8AA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550246
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A69BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G26727T C28698T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550248
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C3037T C10369T A12103G C14408T A20742C A23403G GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550252
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8B1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26313Y C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550258
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8C3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550260
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6980/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C478T C1513T C3037T C6286T C14408T G16221T G21255C C21365Y C21627T C22227T G22346T C22377T A23403G C25831T G26268T C26801G G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550797
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAD44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4406T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550798
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AACDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G G27651A C27944T C28932T C29614Y G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550802
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1263Y C3037T C4543T G5629T G9526T C11497T G13993T C14408T G14874T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550803
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G G25135T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550805
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T C19524T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550806
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A G11083T C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550807
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA46D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21099T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550808
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA263/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G G27014A A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550812
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AACA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G15689A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550814
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9FC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550817
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9F9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550818
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AACB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T4303C T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550819
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA3AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550822
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9FE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550823
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA54C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T A13810G C14408T G21255C C22227T A23403G T26609C C26801G A27609C G28703C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550824
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1274T C3037T C3177T A10323G C12008A C14408T C16289T C18877T G19072T C22444T A23403G A25104G G25563T C26735T T27384C C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550825
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9AA0E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550828
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAC83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T A3920G C6286T C10993T C14408T G20053A T20661C G21255C C22227T C22986T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550832
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA0D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550836
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G25567A C28849G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550837
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA4C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550839
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AACED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7165T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550842
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G704A C1545T C2836T C3037T G8548A T11541G C14408T C15240T T16335C C17550T C18877T C22444T A23403G G24087A G25563T C26735T C28093T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550844
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAB68/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550845
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA51F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G10105T A11782G C14408T T21570G C21575T A23403G T25473C C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550847
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA0F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550848
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA12A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550850
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9AA1DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G11417K C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28775Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550853
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G15016T G15444T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550855
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA2EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G G24098T A25505G C25844T G25906C G25996T G26951T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550858
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA53D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T A13810G C14408T C17502Y G21255C C22227T A23403G T26609C C26801G A27609C G28703C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550859
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G704A C1545T C2836T C3037T G8548A T11541G C14408T C15240T T16335C C17550T C18877T C22444T A23403G G24087A G25563T C26735T C28093T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550860
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C241T TTA516- C3037T C8917T G9389A A10323G C10335T A11908G C14408T C17676T C22858T C22995T A23403G T25027C GGG28881AAC G28975A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550861
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550862
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA48B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T G19723T C21575T A23403G G25302T G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550865
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AADDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550869
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA1B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T G23302T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550872
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9FB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C147T C241T C3037T C14408T C15026T G17616T T22777C A23403G C25904T T27835C T27929C C28311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550873
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9FA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C17639Y C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550875
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550876
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAAC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C1684Y C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550877
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA324/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9165T G10265A G11083T A12229G C14408T C15720T A15972G C19718T A23403G G25157T G26700T G26754T T27844C G28457K T28510C T28759C GGG28881AAC G29348T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550878
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAC1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C4002T G10097A C13536T C14408T C15738T A23403G C23731T C24912T G25440T C27970T C28674T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550882
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA096/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3403T G3518T G3620A C11758T G11842A A12759G C14408T G18292T A20268G G22785T A23403G C28344T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550884
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAB86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550885
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAC65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C501T C3037T G4006T C5170T C6286T G11132T C14408T C15324T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550886
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAC38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T C18377T A23403G C25207T G25565T C25665T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550887
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAC74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T931A T1947C C3037T A5958G C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550888
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA254/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2810G C3037T C3117T C5512T C14408T T19839C A23403G G25906K G27798T GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550892
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAD80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C501T C3037T G4006T C5170T C6286T G11132T C14408T C15324T G21255C C22227T A23403G C25416T T26609C C26801G A27609C G27827T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550894
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T C3037T C6573T C7564T G7675T C14408T C15180T T15888C T19839C A23403G G28378T GGG28881AAC C29708T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550898
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA3CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C3037T C5314T C9724T T10084C C14408T C15180T T15297C C19185T C19718T A22320G A23403G A24580G C26645T T27384C GGG28881AAC A29380G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550902
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAC29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C4002T G10097A C13536T C14408T C15738T A23403G C23731T C24912T G25440T C27970T C28674T GGG28881AAC G29734S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550904
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA3E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T G12514T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550907
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAAB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G G25471K A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550912
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAD08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T T8743C C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G16377T G16647A G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550915
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AACCF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T4303C T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550916
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AABFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550917
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9FD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T C23315T A23403G C26801G C27944T C28932T G29392T G29645T G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550922
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAD26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- TC240- C3037T C4543T G5629T G9526T C11497T C12439T G13993T C14408T G15766T A16889G G17019T C18877T G22487C G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550927
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G25567A C28849G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550928
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA3F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T A21137R C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550931
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550932
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA2FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G704A C1545T C2836T C3037T G8548A T11541G C14408T C15240T T16335C C17550T C18877T C22444T A23403G G24087A G25563T C26735T C28093T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550933
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAD17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G TTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAG27553- C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550937
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA272/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T G1607A C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T G20038T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550938
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G25567A C28849G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550940
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAB77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1099C C3037T A3058C G4631K G11605T C14408T A23403G C25626T C26801T C28093T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550942
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA39D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1063T C3037T C6286T T9167C C11396T C14408T C15810T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550946
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA0C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T A6659G C6883T G12191T C13261T C14408T C15774T T16479C A23403G G23405T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550948
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A G29447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550949
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA0B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550950
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AADAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550953
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAC0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C4002T G10097A C13536T C14408T C15738T A23403G C23731T C24912T G25440T C27970T C28674T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550954
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA37F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550955
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA49A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C6968T C14408T A15984T G17058T C20946T C23248T A23403G C26750T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550958
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAD9F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C501T C3037T G4006T C4467T C5170T C6286T G11132T C14408T C15324T G20170A G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550961
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA38E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15925Y G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550964
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA45E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T C22624T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550966
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AABE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C9541T C14408T A18798C G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550967
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA9B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15951T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550971
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AAD71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G6894K G11132T C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T C29109T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550975
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA9D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G8861A G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550976
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA44F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550977
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA9E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G8861A G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550979
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AADF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G17443T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550981
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9AA1EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T C6286T C10078T G11132T G11417T C14408T G21255C G22051T C22227T A23403G C26801G C28932T G29179T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550984
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA4B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550986
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA3BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1457T C3037T C5314T C9724T C14408T C15180T T15297Y C19185T C19718T A22320G A23403G A24580G C26645T T27384C GGG28881AAC A29380G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550988
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AA139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2395T C3037T G4006T C5170T C6286T G11132T C14408T G16844A G21255C G21641A C22227T A23403G T26609C C26801G A27609C C28310T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550989
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9AADEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T G15243K C18568T C18877T C22444T A23403G G25563T C26735T G27852T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550993
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8EDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T C22227T A23403G G23426T T25202K A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550994
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8FC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C6286T C14408T G21255C C22088T C22227T A23403G C26801G C28932T G29645T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550995
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9B87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550996
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9A8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T772C A2869G C3037T G6352T C6445T C10868T C11514T T14313C C14408T G15652T A23403G G23438T C25006T G27632T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550997
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550999
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9EF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2407T C3037T C3602T G4442T A6098R C6525T C6941T G11761T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551002
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A97DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C21575Y C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551005
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A970B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C4158T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551006
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1911T C2470T C3037T A3904R G4510A C8905T T9067C T11859C C14408T G15438T A16227G A20262G A23403G C24213T G25785T G26450T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551014
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9E42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T A3069G C5007T C14408T C15848T A16474G C17518T C18888A C21058T C23127T T23371C A23403G G26951C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551021
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A913A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G T25202K C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551023
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A95D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G28817T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551025
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A96A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551028
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8FD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C6286T C14408T G21255C C22088T C22227T A23403G C26801G C28932T G29645T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551029
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9B1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551030
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A97B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551035
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A94D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G17443T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551036
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A946E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G G25250T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551038
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9B78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C3037T C3373A A6546G C6883T A10323G A11982T C14408T G21724A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551045
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A94F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13326T C13665T C14408T C15960T G16741T G20131A G20580T C22388T A23403G C24844A C26464T GGG28881AAC G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551046
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9E33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7165T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551064
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9C39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1162G C3037T C4002T G6536T G10097A G11335T C12513T C13536T C14408T T18033C T22321C A23403G C23731T C25624T C28432T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551067
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C5144Y C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551070
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9C48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C16699T C19185T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551077
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9A5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551078
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A93CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3743T G8371T C9430T C13436T C14408T A15477T C18395T AGA20622TTT A23403G C23730T T25202K G25409C G25563T A26319G G28476C C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551081
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9E9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551087
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G G25287T C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551088
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9DBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2485T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T A22798W G22992A A23403G G25563T C25710T C26735T T26876C G28089T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551089
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A93DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551094
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9CC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C6968T C14408T A15984T G17058T C20946T C23248T A23403G C26750T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551096
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A93E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551100
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8F7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T T445C C3037T C4815T C6286T C14408T G21255C C22227T A23403G T26491C C26801G C28932T A29500G G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551104
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T G2144K C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29300T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551111
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A95C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551117
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9AE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9042T C14408T A23403G G26918T C27297T C27610T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551121
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A96C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G526K C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551127
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A945F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1450M C1513T C3037T C6286T G8131T C14408T G17278T G21255C C22227T G22346T C22377T A23403G G25595T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551128
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9ED9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551132
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A93AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC G29000T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551135
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9C0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551139
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9C75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2395T C3037T G4006T C5170T C6286T G11132T C14408T G16844A G21255C G21641A C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551140
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551144
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A905B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4810T C6031T C14408T G20134T C20233T C22210T A23403G C27131T G27478T G28056A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551146
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A906A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551147
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8F31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551148
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8FB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551152
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C207T C241T G625A C3037T C4002T G5950T G10097A C13536T C14408T A18259G G19732T G22332A A23403G C23731T G25907T G26730T GGG28881AAC ACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29707-

EPI_ISL_551153
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A96D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T C14676T G17278T C18032T G18105T G18662C A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551156
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9E51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C3276T C3369T C5147T C6573T G11146T C14408T G22225T A23403G C25517T G25681C G28396A GGG28881AAC A29549T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551161
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9C84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2395T C3037T G4006T C5170T C6286T G11132T C14408T G16844A G21255C G21641A G22139T C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551163
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A95F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551166
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A9255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551168
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A92EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G G27147T C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551170
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9CFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T T8779C A14077G C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551171
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C367T G1181T C1875T C3037T C6286Y C6730T C8169T C10418T C11020T C14408T G19518A A20268G A20634G C20703T A23403G C25672T C25703T C26681T G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551172
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9783/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551174
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9B0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274Y G1899A C3037T C3903T T7767C C8047T G12988T C14408T G15598A C17104T G18028T C19884T A20268G TACATG21765- C22879A A23403G T24910C T26972C C27393T C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551178
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A949B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G7294A C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551182
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8F22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G7736A G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551183
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9D27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T T20100C C21637T A23403G G23426T T25202K A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551184
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9CDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551185
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A93F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1911T C2470T C3037T A3904G G4510A C8905T T9067C T11859C C14408T G15438T A16227G A20262G A23403G C24213T G25785T G26450T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551189
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9D63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551193
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7081Y T7767C C8047T G12988T C14408T G15598A C17104T T17556C G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551196
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9E06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4021T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551209
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9EBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A G16137A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551212
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9B5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2407T C3037T C3602T G4442T C6525T C6941T G11761T C14408T C15324T A16044T C21855T A23403G A25505G T25514C G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551214
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9A7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C3037T G3239A A5101G G5539A G6421T G7042T C7162T T7236G C9118T G11083T C13665T C14408T C15324T T17142A T17688C C17977T G21334T A23403G G28655A G28881A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551223
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551225
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9AD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9042T C14408T A23403G G26918T C27297T C27610T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551228
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G991T C3037T G3053T C4002T G5950T G10097A T10177Y C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551232
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9B3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T C21575T C21597T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551234
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8F40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551239
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A95E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551240
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9E60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C350G T445C C3037T C6286T C14408T G21255C C22227T G23311C A23403G C23557T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551242
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9C66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551243
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9D81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551246
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2086K C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551247
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T G9425R C9745T G11761T C14408T G21255C C22227T A23403G C26801G C27944T C28507T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551250
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A952F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G376T T469C C3037T T7767C T7984C C8047T T11459G C14408T C16658T C17104T G18214A C18796T A20268G C22879A A23403G C25350Y G27598T G28851T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551258
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8ECB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551261
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9686/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18462R G18662C A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551262
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26013Y C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551265
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9D18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T G11083T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T G26428K C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551268
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9ECA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C4499A T7767C C8047T G8179T C12439T C13372T C14408T C17104T T19242C A20268G C22879A A23403G C25083T C25624T C26071T A26319G G28079T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551270
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4467T G13004T C14408T C18486T A20268G C22000T T22162C A23403G C27434T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551273
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9CA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T A5949G G9526T C11497T G13993T C14408T G15766T A16889G G17019T G17572T G18170T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551280
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9D09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1230G A1987G C3037T C6286T G6344T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551281
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9DDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T G25691A A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_552009
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/CAMC-991487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559813
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACE8B/2020
 C241T A2421G C3037T C8683T C14408T G15406T C21618T C21637T A23403G A28169G GGG28881AAC

EPI_ISL_559816
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACF79/2020
 C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC AAAAAAAAAAAAAA29890R

EPI_ISL_559833
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF2D7/2020
 C20M C59M TTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTCGGCTGCATGCTTAGTGCACTCACGCAGTATAATTAA62- C241T T1606C C2062T C3037T C5184A C6027A C13887T C14408T C17786T C18687T G20679T C23248T A23403G GGG28881AAC C29367G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_559838
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF36B/2020
 C241T T445C C2973T C3037T C6286T G9805T C14408T A20599C G21255C C22227T A23403G C26801G T27401C C27944T G28371T C28932T G29645T A29869W A29871R A29876R AAAAAAAAAAAAA29891-

EPI_ISL_559842
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF459/2020
 C241T C3037T T7767C C8047T G12988T C14408T G15598A C16394T C17104T G18028T A20268G TACATG21765- C22127T C22879A A23403G G23876A T24910C G25947T T26972C C27800A C29274T G29734C ACAA29869WMWM AAAAAAAAAAAAAA29890R

EPI_ISL_559844
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF495/2020
 C241T T1468G C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC AAAAAAAAAAAAAAAA29888-

EPI_ISL_559846
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF4B3/2020
 C241T C2536T C3037T C14408T G15438T TTTGGGTGTTTA21982- A23403G C25207T C25665T T26160C G26918T C28453T GGG28881AAC T29464C A29860G A29903-

EPI_ISL_559847
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF4C2/2020
 A138W AATTACTG142- T153W G167K C241T C313T C3037T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_559849
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF529/2020
 C241T T445C C3037T G4006T C5100T C5170T C6286T G11132T C14408T G21255C C22227T A23403G G25987T T26609C C26801G A27609C C28932T G29645T

EPI_ISL_559850
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF592/2020
 C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T C23185T A23403G T26609C C26801G A27609C C28932T G29645T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_559852
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF608/2020
 C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G C27741T GGG28881AAC T29867W AAAAAAAAAAAAAAAAA29887-

EPI_ISL_559853
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF617/2020
 C241T C3037T C4543T G5629T G9526T T10177C C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G27506T G28975C G29399A G29427A G29779T GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_559854
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF644/2020
 AT1- C222T C241T C3037T C3373A A6546G C6883T A11982T C14408T G21724A A23403G GGG28881AAC ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_560080
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A88FA/2020
 C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- G21800T C21978T C22879A A23403G T24910C G25494T T26972C C27800A G28913T G29734C

EPI_ISL_560081
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A89BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T T445C C3037T C5170T C6286T C10078T G11132T G11417T C14408T G21255C G22051T C22227T A23403G C26801G C28932T G29179T G29645T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866T

EPI_ISL_560082
 2020-09-01 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A89CA/2020
 G204T C241T T445C C3037T G5513T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G A27472G C27944T C28932T G29645T A29903-

EPI_ISL_562591
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10692/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G6485A T7540C G11083T A12424R C13011Y C14408T C16222T G16647T A17337G C18555T C22858T G22992A G23401A A23403G C24034T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_562592
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G6485A T7540C G11083T C14408T C16222T T16415Y G16647T A17337G C18555T C22858T G22992A G23401A A23403G C24034T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_562598
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10355/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C G11083T C14408T C16222T G16647T A17337G C18555T C22858T G22992A G23401A A23403G C24034T -25700CCC GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562849
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T T2943A C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC C29614T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_562865
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10311/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5093Y T7540C C12880T C14408T G16647T A17337G C18555T G22992A G23401A A23403G C23655T GGG28881AAC C29614T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_562875
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C9430T C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_562940
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568Y G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563007
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C506T A1163T C3037T C7600T G7798T C11074Y C14408T A23403G T23548C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563008
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10641/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C20133T G22520A G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563044
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563045
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563050
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10716/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C506T A1163T C3037T C4551Y C7600T G7798T C14408T A23403G T23548C GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563071
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563077
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10760/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C G11083K C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563079
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563088
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10786/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T C7119Y T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563099
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563111
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5392T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563129
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T3043C C5986T T7540C C9996T A10236G G14137A C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563130
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC10863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563288
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC11186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3738T C4832T T7540C C9491T C14408T G16647T C18555T C19170T G21800T A21817W C21952T G22992A G23401A A23403G C26571T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563400
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC11504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C T9013C C14408T G16647T C18555T C21843Y G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563401
 2020-09-01 2020-09-30
 Australia hCoV-19/Australia/VIC11505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C T9013C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_568368
 2020-09-01 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9A46D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C186T C241T C3037T C5055T C6720T G10396T G11851T C14408T C14786T G18985T A23403G C24382T G24812T C26895T GGG28881AAC C29642T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568369
 2020-09-01 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9A409C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T C21614T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568370
 2020-09-01 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9A476A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568371
 2020-09-01 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9A473D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568372
 2020-09-01 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9A41D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T C21614T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568373
 2020-09-01 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9A41F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3411T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568374
 2020-09-01 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9A46B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C3457T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568375
 2020-09-01 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9A4779/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T C15081T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568376
 2020-09-01 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9A4050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C A1982G C3037T C6286T C6541Y C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568377
 2020-09-01 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9A45F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C8606T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568378
 2020-09-01 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9A4041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C A1982G C3037T C6286T C10078T C11396T C14408T C18086T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568380
 2020-09-01 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9A3FCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T C21614T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568381
 2020-09-01 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9A474C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T C15081T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568382
 2020-09-01 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9A44CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14178Y C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568383
 2020-09-01 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9A472E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_569197
 2020-09-01 2020-10-02
 France hCoV-19/France/IHU-1564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G T24238C A25505G G25906C G25996T C28651T C28869T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569198
 2020-09-01 2020-10-02
 France hCoV-19/France/IHU-1565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T445C C3037T G4006T G4109T C5170T G5504A C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569200
 2020-09-01 2020-10-02
 France hCoV-19/France/IHU-1567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T C15026T A15219G G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569201
 2020-09-01 2020-10-02
 France hCoV-19/France/IHU-1568/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C3602T C6941T C14408T C15324T A16044T G18859T C21855T A23403G A25505G G25906C G25996T C28651T C28869T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569204
 2020-09-01 2020-10-02
 France hCoV-19/France/IHU-1571/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18568T C18877T G22992A A23403G C23557T G25563T C25710T C26735T T26876C G28975C G29399A G29414T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569205
 2020-09-01 2020-10-02
 France hCoV-19/France/IHU-1572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T T8743C C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G16377T G16647A G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569210
 2020-09-01 2020-10-02
 France hCoV-19/France/IHU-1581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9142T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569216
 2020-09-01 2020-10-02
 France hCoV-19/France/IHU-1587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G2600T C3037T C4543T G5629T C8074T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22918T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569221
 2020-09-01 2020-10-02
 France hCoV-19/France/IHU-1592/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569657
 2020-09-01 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020328525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G199T C241T C1059T C3037T C10039T G12251A C12970T C13487T C13730T G14229T C14408T T16669C G17679T C18312T G22132A A23403G G25455T G25563T C27964T G29434T C29870A

EPI_ISL_569662
 2020-09-01 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020329281/2020
 AT1- C241T C913T C1059T C3037T T6118G C6896T C7279T C10319T G11083T T13839C C14408T C16308T C16694T C21859T G22992T A23403G G25563T A25986T G26109T A26990G C27641T C27964T

EPI_ISL_529641
 2020-09-02 2020-09-10
 United Kingdom hCoV-19/England/BIRM-62AC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C A22206T C22227T A23403G G25049T G25062T C26801G C28657T C28932T G28960T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529642
 2020-09-02 2020-09-10
 United Kingdom hCoV-19/England/BIRM-62AD1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C A22206T C22227T A23403G G25049T G25062T C26801G C28657T C28932T G28960T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529643
 2020-09-02 2020-09-10
 United Kingdom hCoV-19/England/BIRM-62AE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_530336
 2020-09-02 2020-09-11
 Australia hCoV-19/Australia/NSW2738/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8950T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24764T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_530340
 2020-09-02 2020-09-11
 Australia hCoV-19/Australia/NSW2750/2020/P1
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8950T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24764T C26801T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_536660 MW035458
 2020-09-02 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C884T G2258A C3037T A6441G C8140T A9204G C14408T A20268G A23403G C28854T C29445T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536662 MW035460
 2020-09-02 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C1059T G1550A C3037T A5718T C9080T C13665T C14408T C15240T G19788T A19899T A21464G C23315T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536666 MW035464
 2020-09-02 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T T3745C C9598T C11674T C11956T C12025T C14408T C19185T T19839C A23403G C23707T G26620T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536668 MW035466
 2020-09-02 2020-09-16
 United States SARS-CoV-2/human/USA/CA-UW-1296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T G23126T C23185T A23403G G23900C A24253T C24616T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536678 MW035476
 2020-09-02 2020-09-16
 United States SARS-CoV-2/human/USA/CA-UW-1306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T G23126T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536786 MW035579
 2020-09-02 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C5477T C7086T T14191C C14408T C16092T C16260T C23191T A23403G G23900C A24253T G25563T C26110T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540789
 2020-09-02 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR3992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541403 LR882085
 2020-09-02 2020-09-22
 Switzerland 270067
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C245T T445C C1437T C1513T C3037T C6286T C14408T G21255C C22227T G22346K C22377T A23403G C26801G C28706T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541404 LR882068
 2020-09-02 2020-09-22
 Switzerland 270088
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1437T C1513T C3037T C6286T C10741Y G11521T C14408T C19274Y G21255C T21934Y C22227T G22346K C22377T A23403G C26801G C28706T C28932T G29474T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541405
 2020-09-02 2020-09-22
 Switzerland hCoV-19/Switzerland/AG-ETHZ-270091/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C842T T1359C T2926Y C2937Y C3037T A5026R T5047W T5168W T5197Y A5989R T7226K G7294R C7765T A7853R TA7879WW G7940K G9190T C10038Y T10076W C10702T G11083T C11109T C14408T G15243K C17690Y C18877T G19735T C19983Y T19995W A21512W T22360K T22508Y A23403G G24926K A25277R G25395T G25563T C25886T C27429T G28851C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541408 LR882089
 2020-09-02 2020-09-22
 Switzerland 270107
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T A12048R C13671Y C14408T C14805T C16049T G17278T AT20284TC G21255C C21642M C22227T A23403G C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541416 LR882041
 2020-09-02 2020-09-22
 Switzerland 270038
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C162Y C241T T445C G566K C3037T C6286T C7124Y C13671T C14408T C14805T A16210W G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T G28703C C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541420 LR882042
 2020-09-02 2020-09-22
 Switzerland 270058
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C4993T C6286T C13671Y C14408T C14805T G17278T AT20284TC T21075W G21255C C22227T A23403G C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541421 LR882043
 2020-09-02 2020-09-22
 Switzerland 270059
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3602T C6941T TA7783WR G7848S T7891W G11083T G11761T C14408T C15324T T21075W C21621Y C21855T A23403G A24345W A25505G G25906S G25996T G26690T C28651T C28869T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541422 LR882039
 2020-09-02 2020-09-22
 Switzerland 270060
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671Y C14408T C14805T C16049T G17278T AT20284TC G21255C C22227T A23403G C26801G C27223S A27755T C28411T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541423
 2020-09-02 2020-09-22
 Switzerland hCoV-19/Switzerland/BE-ETHZ-270068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313Y T445C C3037T G3047R G3563K A4275R G5037K A5078R C5427Y C6286T A7255W C9611S G10059K TG10869YS A10874W T10881Y A10884W G10890R A10897W T11086Y T11836W C13671T G13690R C14408T T14496Y C14805T T15163W C16111Y T16324Y G16414S G17058T G17278T AT20284TC G21255C C22227T T22426Y T23104Y T23377Y A23403G C23635Y A25022R C25344Y G25352K C26801G A27755W A27892R C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541424 LR882066
 2020-09-02 2020-09-22
 Switzerland 270085
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C449Y C465M C3037T C6286T C6627Y G12031A C13501Y C14408T G20398A T20661C G21255C G21468T C22227T A23403G G25816C C26801G C28932T C29366Y C29386T G29645T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866V

EPI_ISL_541425 LR882065
 2020-09-02 2020-09-22
 Switzerland 270087
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C G602R C3037T C6286T G12031R C14408T G20398A T20661C G21255C G21468T C22227T A23403G G25816C C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541426
 2020-09-02 2020-09-22
 Switzerland hCoV-19/Switzerland/BE-ETHZ-270105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T C11564Y G13993T C14408T G15766T A16889G G17019T C18877T G20578T G21004K G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541466
 2020-09-02 2020-09-22
 Switzerland hCoV-19/Switzerland/LU-ETHZ-270042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T C15450T C19602Y G21255C C21638M C22227T A22379W A23403G T26609C C26801G G27261K C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541467
 2020-09-02 2020-09-22
 Switzerland hCoV-19/Switzerland/LU-ETHZ-270082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T C15450T G21255C T21640W A21647M T21652K C22227T A23403G T26609C C26801G C28391Y C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541468 LR882044
 2020-09-02 2020-09-22
 Switzerland 270043
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671Y C14408T C14805T G17278T G19060R AT20284TC A20849R C21013Y G21255C A21461R AG21603RR G21830T C22227T A23403G C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541472
 2020-09-02 2020-09-22
 Switzerland hCoV-19/Switzerland/VD-ETHZ-270056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2995T C3037T C4002T C4039Y T4871C C6449T G10097R C10252T C13536T C14408T C19366T C19972Y C19983Y T21154K A21457R A23403G C23731T A24180W A24182W T27808C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541473 LR882045
 2020-09-02 2020-09-22
 Switzerland 270064
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C14408T T20661C T21075W G21255C G21468T C22227T A23403G C24937T C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541474 LR882062
 2020-09-02 2020-09-22
 Switzerland 270065
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T G411R T445C G526K C3037T G3893A C6286T T7305K C14408T C17304T T20661C G21255C G21468T T21471K T21579Y T21653Y C22227T A22375W A22379W T22389Y A23403G C23987T C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541475 LR882063
 2020-09-02 2020-09-22
 Switzerland 270066
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G G28028T C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541482
 2020-09-02 2020-09-22
 Switzerland hCoV-19/Switzerland/VD-ETHZ-270095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C24937T C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541510 LR882047
 2020-09-02 2020-09-22
 Switzerland 270039
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C10560T G11842A C12723Y A12759G C14408T G14874K G18292T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541511 LR882040
 2020-09-02 2020-09-22
 Switzerland 270040
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C G561R C1513T A2905R C3037T T3127W C3130Y G6008A C6286T C7239Y C7299M C14408T A16328R C16338M T16404Y G21255C C22227T C22377T C23114M A23122M A23403G C26801G C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541515 LR882064
 2020-09-02 2020-09-22
 Switzerland 270069
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C584T C1722T C3037T T4164Y T7185W G10265A C14408T C15720T A15972G C19718T T21473Y T21480W T21655K A22412W T22483W A23403G C27002T G27659T G28089K T28759Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541516
 2020-09-02 2020-09-22
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-270081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541517
 2020-09-02 2020-09-22
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-270084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346K C22377T A23403G G25595T C26801G C28512T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541723
 2020-09-02 2020-09-23
 India hCoV-19/India/MH-NIV-191205/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C3037T C4540T C5700A C14408T C20384T T20949C A23403G C23604A C25613T GGG28881AAC G29260A GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_542094
 2020-09-02 2020-09-23
 United States hCoV-19/USA/NMDOH-2020324233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C1385T G1738T C3037T G3242A C9979T C11916T C14408T C22227T A23403G G25266T G25563T C28087T T29360Y

EPI_ISL_542095
 2020-09-02 2020-09-23
 United States hCoV-19/USA/NMDOH-2020324359/2020
 ATTAAA1- C241T C3037T C4586T C14408T G17808C A20268G C20759T A23403G T24076C C28854T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_542097
 2020-09-02 2020-09-23
 United States hCoV-19/USA/NMDOH-2020325588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T G2534T C3037T C5310T C9565T C9988T C11747T C13297T C13994T C14408T G19684T C21618G G21800A A23403G G25563T C26335T C27964T G28621T A29615T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_547759
 2020-09-02 2020-09-24
 United States hCoV-19/USA/WI-GMF-18405/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C203T C241T C1059T G1439T C2607T C3037T C14408T A14634G C18555T C22432T A23403G G25563T C27493T C28892T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547760
 2020-09-02 2020-09-24
 United States hCoV-19/USA/WI-GMF-18456/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19872T C21304T A23403G G25563T G25907T C27964T C28869T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547761
 2020-09-02 2020-09-24
 United States hCoV-19/USA/WI-GMF-18461/2020
 ATTAAAGGTTTATACCT1- C241T C475T C1059T C3037T C5986T C12754T C14408T A23403G G25563T T26897C A28389T C29837T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_547762
 2020-09-02 2020-09-24
 United States hCoV-19/USA/WI-GMF-18466/2020
 ATTAAAGGTT1- C241T A831G T1562C G2035T C3037T A3262G T3745C C11674T C11956T C12025T C14408T T19839C A23403G C23707T G25049T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547763
 2020-09-02 2020-09-24
 United States hCoV-19/USA/WI-GMF-18506/2020
 ATTAAAGGTTTA1- C241T AAGTCATTT686- C1059T G1550A C3037T A5718T C9080T C13665T C14408T C15240T G19788T A19899T A21464G C23315T A23403G G25563T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_547765
 2020-09-02 2020-09-24
 United States hCoV-19/USA/WI-GMF-18528/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A696C C3037T G3871T T3931C C4226T C5672T C6990T A7837C C14408T G19677T A23403G G25947T C28977T G29744T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547773
 2020-09-02 2020-09-24
 United States hCoV-19/USA/WI-GMF-18660/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19872T C21304T A23403G G25563T G25907T C27964T C28472T C28869T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549951
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A523B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549954
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6B4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241A G1148T C3037T C9714T C11514T C13168T C13551T C14408T C18877T C22444T A23403G G24764T G25563T C26735T C27059T G27806T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549962
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6EDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549963
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A51D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C11003T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC C29095T G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549969
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A505F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11704T A12964G C14408T C23191T A23403G G24000T T28297C GGG28881AAC C29119T A29139T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549974
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6A05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G8612T G14202T C14408T C17304T G18078A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549975
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8CD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549977
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A83AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T A2491G C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549978
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A50E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C501Y C3037T G4006T C5170T C6286T G11132T C14408T C15324Y G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549979
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A8696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549980
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A848D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T G24140T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549983
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A51F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26464T C26801G T27693Y C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549988
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G7936T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549989
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A86B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A G10265A C13536T C14408T G19732T A23403G C23731T T28759Y GGG28881AAC G29348K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549992
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A52E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T C9170M G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T C20823T G22992A A23403G G25563T C25710T C26735T T26876C G28077K G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550004
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T C5866T G6341A G6352T C10776T ATT12627- C14120T C14408T C15540T G17019T A23403G C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550005
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550007
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A85D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C11747T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550009
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A84E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550014
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A85B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C843T C3037T A5598G G9928T G11516T C14408T T21976C A23403G G28233T GGG28881AAC C29025T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550017
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A8678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G18027R G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550021
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A854E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T A10701G C14408T C15324T A16044T G21295T G21604K C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550026
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A530B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T A3920G C6286T C10993T C14408T G20053A T20661C G21255C C22227T C22986T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550027
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8DDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G4105K G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550030
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A51C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10908T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550032
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A507D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550033
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A861E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C11747T C14408T C14571Y G21255C C22227T A23403G C26801G C27944T C28687Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550037
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A8CB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G G23580C T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550040
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6AD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T G1439T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550046
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A8687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550051
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A50B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T G4232T C7528T C14408T C18877T G21938K C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550052
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8D19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550054
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5286/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C241T T277C C3037T T3163C A4916R A7103G C14408T T14574G C14805T C18086T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550057
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8DBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550059
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T C26895T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550064
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A508C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T G12769T T14313C C14408T G15652T A23403G G23438T C25006T G25641T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550065
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6ABA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C5673T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G G25250T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550068
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A85E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C11747T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550070
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6B7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550071
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A50AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550079
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8DCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C6286T C14408T G21255C C22227T A23403G G24098T TT26485- C26801G G27877T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550080
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A856C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T C29555T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550081
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A524A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550082
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A847E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C657T C3037T C4406T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550083
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6A6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550084
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6ECD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15202T G15406T C21637T A23403G G25687T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550085
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A50F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C3832Y C6286T C14408T G21255C A22206T C22227T A23403G G25049T G25062T C26801G A28271G C28657T C28932T G28960T C29366T G29402T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550086
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6B5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C A22206T C22227T A23403G G25049T G25062T C26801G C28657T C28932T G28960T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550088
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A513E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C T2319C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550089
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8DEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G8861A G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550093
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6EAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T A7990T C14408T C18167T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550097
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A52B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18568T C18877T C22444T A23403G G25563T C26735T G27852T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550100
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C28253Y G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550102
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6A9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G7988A G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550106
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6F15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T A3081G C7051T C7303T C8964T G11083T C11379T C14408T A23403G G25314T GGG28881AAC C29296T G29744A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550112
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550115
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5259/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1722T C2509T C3037T C6286T C6538T C14408T G21255C C22227T G22468T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550118
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A855D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G6986R G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27364C GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550126
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T G13004S C13665T C14408T C15960T G16741T G20131A G20580T G21986T A23403G C24844A C26464T GGG28881AAC G29648T G29747T C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550130
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6EFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C7051T G8612T G14202T C14408T C17304T G18078A C18788T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550131
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A853F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T C5866T G6341A G6352T C10776T ATT12627- C14120T C14408T C15540T G17019T A23403G C27945T G27967T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550136
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C11620T C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550139
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6F06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A21137G A21366G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550141
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A84F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C3037T T9151C C9430T C9693T C13887T C14408T G16853T G21796T C23248T A23403G G25429T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550148
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6EBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G G25135T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550152
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A865A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550153
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A512F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T C6568T C7162T C12116T C12809T C14408T G20718T A23403G C27532T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550157
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6A14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T T10177C C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550158
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A846F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550160
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6B20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G G25135T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550162
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A857B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G370T C3037T C5654T C9857T C14408T G22021T A23403G T28031C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550163
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A6AE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550167
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A509B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G526T C2973T C3037T G10870T C14408T C15324T A23403G C25549T C28887T G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550176
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A531A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T A3920G C6286T C10993T C14408T G20053A T20661C G21255C C22227T C22986T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550177
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A85F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C11747T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550180
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A84AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C7935T G9802T G12067T C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550181
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A83BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C26139T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550182
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A521D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550183
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11704T A12964G C14408T C23191T A23403G G24000T T28297C GGG28881AAC C29119T A29139T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550184
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8D73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6445T C14408T A20742C C21952T A23403G G24781T C28087T C28310T GGG28881AAC A29521T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550187
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A6B3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550188
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8D0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T G8131K C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550189
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A85C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15755T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550190
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550196
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A50C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5654T G7393T C9857T C13965Y G14371T C14408T C20320T G22021T A23403G G26389T T28031C GGG28881AAC G29543T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550197
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A864B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G18149T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550198
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A84D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G17259T G21255C A22206T C22227T A23403G G25049T G25062T C26801G G27463T C28657T C28932T G28960T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550201
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6AC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T G28123T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550203
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A862D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C18526Y A20742C C21952T A23403G G24781T C28087T C28310T GGG28881AAC A29521T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550204
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T T2326Y C3037T C6568T C7162T C12116T C12809T C14408T A19682R G20718T A23403G G24781K C27532T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550205
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8D28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550208
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8CC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T G28851T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550213
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6BF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C14674T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550214
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8CEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550218
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A84C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C7935T G9802T G12067T C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550224
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A51E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26228T T26609C C26801G A27609C C28932T G29645T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550225
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8DA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550232
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6A50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T G22205C C22227T A23403G C26801G C27881A C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550233
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8599/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C C28253Y G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550239
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A515C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT C22591T A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550245
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6F24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11083T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550251
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A6A8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T A6659G C7267T T7767C C8047T A10978T A11623G C13643T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29402T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550255
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C190T C241T C3037T A3786G C5055T G11851T C14408T C14786T G19348T A23403G G24812T C26895T G28817T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550257
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A5338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550259
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A85A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2395T C3037T G4006T C5170T C6286T G11132T C14408T G16844A G21255C G21641A G22139T C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551008
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G18412T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551015
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T931A T1947C C3037T A5958G C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551016
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A97FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G4255A T7767C C8047T C11152T G11516T T13212C C13372T C14408T C17104T T19242C A20268G C22879A A23403G C23664T C25587Y C25624T G27659T G29254T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551065
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551145
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551188
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T T445C C3037T C4815T C6286T A11887T C14408T G21255C C22227T A23403G T26491C C26801G C28932T A29500G G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551192
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A9668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C16394T C17104T G18028T A20268G TACATG21765- C22127T C22879A A23403G G23876A T24910C G25947T T26972C C27800A C29274T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551224
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A97ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551231
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A964A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551264
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A902E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G7037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_551284
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A92A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T C26858T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559802
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACC81/2020
 C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A

EPI_ISL_559803
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACCAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCT1- A158W T194K A196W TCGTCC202- C241T C3037T C8683T C14408T G15406T C21637T A23403G C24378T A28169G GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29871-

EPI_ISL_559804
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACCCD/2020
 C241T T445C C1513T C3037T C6286T C11747T C14408T G16795T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T AAA29901-

EPI_ISL_559805
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACCFA/2020
 G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28093T C28932T G29645T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_559806
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACD06/2020
 C241T C2416T C3037T C3505T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A

EPI_ISL_559807
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACD24/2020
 C241T C2416T C3037T C7125T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T T25845C A26319G C28854T G29044A

EPI_ISL_559808
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACD60/2020
 C241T C904T C3037T C8683T C10165T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC

EPI_ISL_559809
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACE03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T T25845C A26319G C28854T G29044A GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_559810
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACE21/2020
 C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T A23403G G23438T GGG28881AAC C29095T G29449T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_559811
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACE5E/2020
 C241T C3037T C4543T G5629T G9526T T10177C C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T

EPI_ISL_559812
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACE7C/2020
 C241T C2062T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T G25217T GGG28881AAC A29898R AA29902-

EPI_ISL_559814
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACE9A/2020
 C241T C3037T T5507A C7113T C9803T G11083T C11941T T14100C C14408T C16349T A20268G C21614T A23403G G25290T C28846T C28854T C29167T

EPI_ISL_559815
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACF00/2020
 C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T

EPI_ISL_559817
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AD093/2020
 C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T A29896D

EPI_ISL_560005
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9ACDAC/2020
 G204T C241T T445C C3037T C6286T C10078T C11396T G14055T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560007
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9ACED6/2020
 G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AA29902-

EPI_ISL_560008
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9ACEE5/2020
 G204T C241T T445C C3037T C4815T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C24795T C26801G C27944T C28932T G29645T

EPI_ISL_560009
 2020-09-02 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9ACEF4/2020
 G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_562858
 2020-09-02 2020-09-30
 Australia hCoV-19/Australia/VIC10296/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G C26885Y C28256T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_562861
 2020-09-02 2020-09-30
 Australia hCoV-19/Australia/VIC10304/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24096T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562910
 2020-09-02 2020-09-30
 Australia hCoV-19/Australia/VIC10437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6594T T7540C C14408T G16647T C18555T C18814T G22992A G23401A A23403G GGG28881AAC C29837Y GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_562932
 2020-09-02 2020-09-30
 Australia hCoV-19/Australia/VIC10491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C9474T C14408T G16647T A17337G C18555T G22992A G23401A A23403G G25947K GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563021
 2020-09-02 2020-09-30
 Australia hCoV-19/Australia/VIC10660/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G T26123C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563075
 2020-09-02 2020-09-30
 Australia hCoV-19/Australia/VIC10758/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C920T A1163T C3037T T7540C T11541G C14408T G16647T A17337G C18555T T22896Y G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837M

EPI_ISL_563083
 2020-09-02 2020-09-30
 Australia hCoV-19/Australia/VIC10774/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T T508A A1163T C1348T C3037T T7540C C8917T G11042T C12102T C14408T G16647T C18555T C20930T G22992A G23401A A23403G A24340C G25993A G27506A GGG28881AAC G29692T G29777T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563090
 2020-09-02 2020-09-30
 Australia hCoV-19/Australia/VIC10788/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C2488T C3037T T7540C C14408T G16647T A18298G C18555T C22480T G22992A G23401A A23403G C24026T T27957C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563119
 2020-09-02 2020-09-30
 Australia hCoV-19/Australia/VIC10835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C66T C241T T423C A1163T C3037T T7540C C11109T C14408T C16375Y G16647T C17850T C18555T G22992A T23119Y G23401A A23403G G25599T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563131
 2020-09-02 2020-09-30
 Australia hCoV-19/Australia/VIC10866/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T3043C C5986T T7540C C9996T A10236G G14137A C14408T G16647T C18555T G22992A G23401A A23403G C28512G GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_563132
 2020-09-02 2020-09-30
 Australia hCoV-19/Australia/VIC10867/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T3043C C5986T T7540C C9996T A10236G G14137A C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563810
 2020-09-02 2020-09-30
 Australia hCoV-19/Australia/VIC13700/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- T141C C241T A1163T C3037T T7540C C9714T C14408T G15594T G16647T C18555T G20489K G22992A G23401A A23403G G25599T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_569199
 2020-09-02 2020-10-02
 France hCoV-19/France/IHU-1566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T445C C3037T G4006T C5170T C6286T C10615T G11132T C14408T G21255C C22227T C23191T A23403G T26609C C26801G C28932T G29645T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569202
 2020-09-02 2020-10-02
 France hCoV-19/France/IHU-1569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29701A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569206
 2020-09-02 2020-10-02
 France hCoV-19/France/IHU-1573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C TTTACTCTCCAATTT27680- G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569207
 2020-09-02 2020-10-02
 France hCoV-19/France/IHU-1574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C222T C241T C503T C3037T C4543T C5115T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T G26720T C26735T T26876C G27996T G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569649
 2020-09-02 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020327831/2020
 ATTAA1- C241T C1812T C2416T C3037T G6094A C14408T C16616T A23403G G25563T C26885T C27603T C28887T G29759T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_569650
 2020-09-02 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020327863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C676T C706T T833C C1059T C3037T C6541T C6629T C11379T C11884M C12733T C14408T C16580T G22030T A22320G A23403G G25563T C25667T C27964T C29530T

EPI_ISL_569658
 2020-09-02 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020328640/2020
 ATTAAAGGTTTA1- C241T C1059T C2675T C3037T G8264T C10319T C14408T A18424G C21304T G22103A A23403G G25563T G25907T C26060T G26227T C27964T C28472T C28869T G29759T

EPI_ISL_569663
 2020-09-02 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020329356/2020
 ATT1- C241T C3037T C9996T C10741T C14408T G19542T A20268G A23403G C23604A T24076C C28854T G29266A T29710C

EPI_ISL_535214
 2020-09-03 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A1E2/2020
 AT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G A29903-

EPI_ISL_536429
 2020-09-03 2020-09-16
 Singapore hCoV-19/Singapore/888/2020
 ATTAAAGGTTTATACCT1- C241T T1947C C3037T A8170T C13860Y G13892A C14408T C18877T C21036T C22444T A23403G C25513T G25563T G25906T C26735T C28854T T29867A AAAAAAAAAAAA29892-

EPI_ISL_536430
 2020-09-03 2020-09-16
 Singapore hCoV-19/Singapore/889/2020
 ATTAAAGGTTTA1- T2029A A3061G C6310A C6312A C7851T G10496A G11083T C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_536431
 2020-09-03 2020-09-16
 Singapore hCoV-19/Singapore/890/2020
 ATTA1- C1912T C2695T C6310A C6312A G11083T C13730T C19524T G20679T C22388Y C23185T C23929T C24748T G26152A A27663G C28311T AAAAAAAAAAAA29892-

EPI_ISL_536444
 2020-09-03 2020-09-16
 Singapore hCoV-19/Singapore/903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- T2029A A3061G C6310A C6312A C7851T G10496A G11083T C13730T C19524T A20735G C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_536445
 2020-09-03 2020-09-16
 Singapore hCoV-19/Singapore/904/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C1912T C2695T C6310A C6312A A8674R T8731Y G11083T C13730T C19524T G20679T C23185T C23929T C24748T G26152A A27663G A28052R C28311T AAAAAAAAAAAA29892-

EPI_ISL_536765 MW035557
 2020-09-03 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19872T C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536766 MW035558
 2020-09-03 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1395/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1157A C3037T G8083A C10319T C14408T C14805T A18424G T19215C G19816T C21304T A23403G G25563T C25710T G25907T C26882T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536767 MW035559
 2020-09-03 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5467T G8083A A9085G C10319T C14408T C14805T A15219G A18424G C21304T A23403G G23593T G25563T G25647T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536769 MW035561
 2020-09-03 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T C11674T C11956T C12025T C14408T C16694T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536770 MW035562
 2020-09-03 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3768A T9721C C12025T G12514T C14408T C19164T T19839C C19955T G21220T A23403G C23707T G25906T G26574C G27717A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536776 MW035568
 2020-09-03 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3190G C3695T C9994T C10319T C14408T A18424G C19868T A21037G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536779 MW035571
 2020-09-03 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1409/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T A23403G G23900C A24253T G25563T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536783 MW035575
 2020-09-03 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1413/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T A23403G G23900C A24253T G25563T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536784 MW035576
 2020-09-03 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1414/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T T2978C C3037T C5700A C14408T G15406T C19859T A23403G G28476A GGG28881AAC G29449T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540880
 2020-09-03 2020-09-21
 United Kingdom hCoV-19/Scotland/EDB7736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3165T C6312T C12513T G14122T C14408T C18877T A20559G C22444T C23127T A23403G C25466A G25563T C26735T T26876C C28311T C28854T A28900C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541409 LR882081
 2020-09-03 2020-09-22
 Switzerland 270111
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1437T C1513T C3037T C6286T G11521T C14408T T21075W G21255C C22227T G22346K C22377T A23403G C26801G C28706T C28932T G29474T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541427 LR882078
 2020-09-03 2020-09-22
 Switzerland 270109
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C4993T C6286T C8756Y C13671Y C14408T C14805T G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541428 LR882079
 2020-09-03 2020-09-22
 Switzerland 270110
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C3241Y C4993T C6286T C13671Y C14408T C14805T G17278T AT20284TC G21255C A21625R C22227T A23403G C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541429
 2020-09-03 2020-09-22
 Switzerland hCoV-19/Switzerland/BE-ETHZ-270112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541430
 2020-09-03 2020-09-22
 Switzerland hCoV-19/Switzerland/BE-ETHZ-270116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C504Y C3037T G3287T C6286T T7232Y G8322R A9859W A9912W T10076W C14408T C16887T G21255C C22227T A23403G C26801G C27944T T28098Y C28932T G28960T G29645T T29817Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541432 LR882104
 2020-09-03 2020-09-22
 Switzerland 270121
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1361A C3037T G4510A C4543T A5522R G5629K G9526T G9998K T10076W C11497T G13993T C14408T G15766T A16889G G17019T C18877T C19859Y G22992A A23403G G25563T C25710T G26062T C26735T T26876C G28975C G29399A G29711K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541433 LR882107
 2020-09-03 2020-09-22
 Switzerland 270126
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C21614Y G22992A A23403G G25563T C25710T G26567R C26735T T26876C G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541434 LR882099
 2020-09-03 2020-09-22
 Switzerland 270130
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2062T C3037T C3096T C4002T A4117C G5950K G10097R A10205W A10258W T10273W C13536T C14408T C14688T A19002G G19732T G21468R C21789Y A23403G C23625T C23731T A24010R G27987C GGG28881AAC C29366Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541447 LR882090
 2020-09-03 2020-09-22
 Switzerland 270079
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3784Y G4255T C14408T C17127A C19274M C20436T A23403G G24926T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541448
 2020-09-03 2020-09-22
 Switzerland hCoV-19/Switzerland/BL-ETHZ-270101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C842T T1359C C3037T C7765T G9190T C10702T G11083T C11109T C14408T G15243K C17690Y C18877T G21624R A23403G G25563T C25886T C27429T G28851C TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541449 LR882077
 2020-09-03 2020-09-22
 Switzerland 270108
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A610R C635Y C1471T G2659K G2782T C3037T A9912W G9945S C11050Y C12809T C14408T C15251A C21034T C21590T A22394R G23302A A23403G T23527Y C25710Y C27625Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541465 LR882100
 2020-09-03 2020-09-22
 Switzerland 270132
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T C3037T A3779M G10265A C14408T C15720T A15972G C19688Y C19718T G20002K C22987T C23191T A23403G G24933K G26700T G28373T T28759C GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541476
 2020-09-03 2020-09-22
 Switzerland hCoV-19/Switzerland/VD-ETHZ-270072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G411R C478M G625R A2908R G2957R C3037T C4543T A5220R A5405R G5441R A5541R G5629T G5992R C7735T G9526T C11497T G13993T C14408T G15766T A16210W G16252R T16380Y A16889G G17019T C18877T C21654Y A22438R G22992A C23103Y A23403G G25563T C25710T C26735T T26876C T28934Y T28952Y G28975C G29399A A29818W A29865H TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541477 LR882073
 2020-09-03 2020-09-22
 Switzerland 270075
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C556Y G558R C3037T C4543T T5517W G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C22439Y G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28806S G28975C G29399A ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866R

EPI_ISL_541478
 2020-09-03 2020-09-22
 Switzerland hCoV-19/Switzerland/VD-ETHZ-270076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541479 LR882067
 2020-09-03 2020-09-22
 Switzerland 270077
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C601Y C3037T C4543T G5629K T7156Y T7158Y T7305K G9526T T10061K C11497T G13993T C14408T G15766T A16210W A16410R A16889G G17019T C18877T C22347S A22374M G22494R T22516W G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A G29864K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541483 LR882074
 2020-09-03 2020-09-22
 Switzerland 270097
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T627Y A641W C3037T C4543T C4794Y T5409Y G5629T G9526T T9887Y A9912R G9920S C11497T G13993T C14408T G15766T A16889G G17019T C18877T C21658M A22398W G22421S G22992A A23403G G25563T C25710T C26735T T26876C C27644T G27877T C28253Y T28933Y T28945Y G28975C T28981Y G29399A C29738M G29781K A29865R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541484 LR882071
 2020-09-03 2020-09-22
 Switzerland 270098
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K C7764Y G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G T23569C G25563T C25710T C26735T T26876C G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541487 LR882084
 2020-09-03 2020-09-22
 Switzerland 270113
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T T21467W G22992A A23403G G25250K G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541488 LR882088
 2020-09-03 2020-09-22
 Switzerland 270114
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C622M C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541489 LR882091
 2020-09-03 2020-09-22
 Switzerland 270115
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T T5487Y G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T A21258R T21462W A22356M G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541490 LR882096
 2020-09-03 2020-09-22
 Switzerland 270122
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1471Y G1940A C3037T A3090R T3104W T3144Y C4543T C5091M G5375S T5394Y G5411K T5460K A5538R A5546R G5629T T7122Y T7129W A7167W G9526T C11497T G13993T C14408T G15766T A16210W C16362Y A16889G G17019T C18877T C19029Y C21654Y C22945M G22992R A23403G G25563T C25710T G25996T C26735T T26876C C27434T C28890Y A28971R G28975C G28985R G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541492 LR882094
 2020-09-03 2020-09-22
 Switzerland 270124
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G441R G526T G564K C2973T C3037T G10870T C14408T C15324T A23403G C25549T C28887T G28975T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541507 LR882069
 2020-09-03 2020-09-22
 Switzerland 270074
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T T14619Y G15766T A16889G G17019T C18877T A18887R G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A C29421Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541519 LR882075
 2020-09-03 2020-09-22
 Switzerland 270099
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C337Y T445C C3037T C6286T A10323R C13671Y C14408T C14805T G17278T AT20284TC C20436T G21255C C22227T A23403G G25455K C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541521
 2020-09-03 2020-09-22
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-270118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3267T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541522 LR882083
 2020-09-03 2020-09-22
 Switzerland 270119
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C10560T G11842A C12723Y A12759G C14408T C16394A A18082G G18292T A20268G T21075W A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541523 LR882105
 2020-09-03 2020-09-22
 Switzerland 270128
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A435R T606Y GGC613KKM CGT635MSK C3037T T7134K A7300R C10560T G11842A C12723Y A12759G C14408T G18292T A20268G T22435Y A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_541724
 2020-09-03 2020-09-23
 India hCoV-19/India/MH-NIV-192922/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C313T C486G C3037T C4540T C5700A C12003T C12171T C14408T C20384T T20949C A23403G C23604A G28209C GGG28881AAC G29737T GTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29825-

EPI_ISL_547583
 2020-09-03 2020-09-24
 United States hCoV-19/USA/WI-UW-1402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1157A C3037T G8083A C10319T -10387T C14408T C14805T A18424G T19215C G19816T C21304T A23403G G25563T C25710T G25907T C26882T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547766
 2020-09-03 2020-09-24
 United States hCoV-19/USA/WI-GMF-18553/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C475T C1059T C3037T C5986T C12754T C14408T A23403G G25563T T26897C A28389T C29837T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547767
 2020-09-03 2020-09-24
 United States hCoV-19/USA/WI-GMF-18563/2020
 ATTA1- C241T A696C C3037T G3871T T3931C C4226T C5672T C6990T A7837C C14408T A17078G G19677T A23403G G25947T C28977T G29744T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_547769
 2020-09-03 2020-09-24
 United States hCoV-19/USA/WI-GMF-18577/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G61T C241T AAGTCATTT686- A696C C3037T G3871T T3931C C4226T C5672T C6402T A7837C T8082C G12202T C14408T A19629G C21431T G22317A A23403G G24199T C28977T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_547770
 2020-09-03 2020-09-24
 United States hCoV-19/USA/WI-GMF-18594/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19872T C21304T A23403G G25563T G25907T C27964T C28869T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547771
 2020-09-03 2020-09-24
 United States hCoV-19/USA/WI-GMF-18609/2020
 ATTAAAGGTTTATACCTTCCCA1- C203T C241T C1059T G1439T C2607T C3037T C14408T A14634G C18555T C22432T A23403G G25563T C28892T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547772
 2020-09-03 2020-09-24
 United States hCoV-19/USA/WI-GMF-18658/2020
 ATTAAAGGTTTA1- C241T A696C C3037T G3871T T3931C C4226T C5672T C6990T A7837C C14408T G19677T A23403G G25947T C28977T G29744T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547774
 2020-09-03 2020-09-24
 United States hCoV-19/USA/IL-GMF-18664/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C2399T C3037T A3184G C7788T G12202T C14408T T22054C A23063T A23403G G26439T G28378T GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548077
 2020-09-03 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0246/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548120
 2020-09-03 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3267T C7851T C8683T G11291T C14408T C18877T C21034T C22444T T22882G A23403G G25563T G26173T C26735T G28183T T28277C G28690T C28854T T29652C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549215 MW040643
 2020-09-03 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1433/2020
 A1- C241T C2416T C3037T A6613G C14408T C16616T A23403G G24770T G25563T C26885T C27603T C28887T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_549216 MW040644
 2020-09-03 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1434/2020
 ATTAAAGGTTTA1- C21T C241T C1059T C3037T C3369T C5583T G8017T C14408T C16260T A23403G G25563T G28134A C28290T C28821A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549217 MW040645
 2020-09-03 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1435/2020
 ATTA1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T T28543C C28869T C29274G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_549218 MW040646
 2020-09-03 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1436/2020
 ATTA1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C22594A A23403G G25563T G25907T C27964T C28472T C28869T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549219 MW040647
 2020-09-03 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1437/2020
 ATTA1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C22594A A23403G G25563T G25907T C27964T C28472T C28869T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_549391
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/CAMB-1B5DC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C13009T C14408T G18462T G21255C C22227T G22346T A23403G C26801G G28321A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549403
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B1F26/2020
 C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC

EPI_ISL_549409
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B2444/2020
 C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T

EPI_ISL_549948
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6D84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549957
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6BE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549958
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A55C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549959
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A557E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549960
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5611/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T G4105T C14408T A20268G A23403G C25731T C27600T C28776T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549964
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6C1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T A23403G C24844A C26464T GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549982
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A54F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C15738T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549990
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A571E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C936T A2342G C3037T G3259T C11591T C14408T G17122T C18348T A23403G A26069G G26193K G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549991
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A54BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T A16582T G18615T C21855T G23311T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549993
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6C5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C280T C3037T T7767C C8047T C8752T G12988T C14408T G15598A C17104T G18028T A19736G A20268G A21137G TACATG21765- G21800T C22879A A23403G T24910C G25494T C25791T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549996
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6D75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T G11851T C14408T C14786T A23403G G24812T A25448C C26895T A27976G GGG28881AAC G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550001
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6D57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C17934A A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550003
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A572D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G18105K G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550008
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T G16871A A16889G G17019T C18877T G22992A A23403G G25477S G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550011
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2184G C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550012
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C6638Y G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550013
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5435/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550019
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A53CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T A6223R A6440G C7303T C7564T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T C19524T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550022
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5383/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T C21855T A23403G G24098T A25505G C25844T G25906C G25996T G26951T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550031
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A55D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28346T G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550035
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A55BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28346T G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550036
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A5532/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C119Y G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550038
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5620/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T A8628R C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550042
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550043
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A563F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T G4105T C14408T A20268G A23403G C25731T C27600T C28776T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550044
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6C96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G4255A T7767C C8047T C11152T G11516T T13212C C13372T C14408T C17104T T19242C A20268G C22879A A23403G C23664T C25624T G27659T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550045
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C16394T C17104T G18028T A20268G TACATG21765- C22127T C22879A A23403G G23876A T24910C G25947T T26972C C27800A C29274T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550047
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6C78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A642G T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T A23403G G23438T T24631Y A24885G GGG28881AAC C29095T G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550048
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6D1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T A5725R G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550055
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6D39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550056
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6DC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337Y A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550074
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C15738T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550094
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A55F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T786A C3037T T7767C C8047T G8861A G12988T C14408T G15598A C16084Y C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C C25504T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550095
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5602/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1627Y C2189T C3037T G8131C G9130T C10450T C14408T C16111T A23403G T25171C G25913T T27319C G28487A C28868T GGG28881AAC G29706T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550098
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6C2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G6421T G9526T C11497T G13993T C14408T G15766T G16795T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550099
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6D93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6934C T7767C C8047T G12988T C14408T G15598A G16206T C17104T G18028T A20268G TACATG21765- C22879A G23270T A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550109
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6C3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T C6336T G9526T C11497T G13993T C14408T G15766T C16658T A16889G G17019T C18877T C21306Y G22992A A23403G G25563T C25710T G26529T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550129
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6DB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1479T C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C25797A T26609C C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550134
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5550/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550138
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A5347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550142
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A53FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29204T G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550143
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A54AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550145
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A6CC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T G29468T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550146
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A6CB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550149
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A558D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550155
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A564E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T T445C C3037T C4815T C6286T C14408T G21255C C22227T A23403G T26491C C26801G C28932T A29500G G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550156
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T G16871A A16889G G17019T G17562T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550159
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A6CD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550165
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6CE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A G11417T C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550172
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5541/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T C11653T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550173
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6DDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G8861A G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550175
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A6C69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550186
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A6CA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550191
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A567B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C583T C3037T C5700A G11365K C14408T C22000T G22487C A23403G C23525T C25791T G27948T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550193
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C5850Y C7528T C14408T C18568T C18877T C22444T A23403G G25563T C26735T G27852T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550194
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550199
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T C21575T C21597T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550207
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A559C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C9532T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T C20823T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550211
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A56A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C5144T C6286T C11396T C14408T G21255C C21614T G22205C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550222
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A566C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G2755T C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550227
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6D66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550235
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G C23664Y G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550238
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A54EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T G25217T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550240
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A6DA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550244
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A53ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29204T G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550256
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A565D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2140G C3015T C3037T C9165T T9697C C10448T C11866T C14408T A20268G A23403G T28813G T29726- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559825
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF161/2020
 ATTAAAGGTTTAT1- C241T C835T C3037T ACCTAGAGTTTTTAGTGCAGTTGGTAACATCTGTTACACACCATCAAAACTTATAGAGTACACTGA8920- C14408T A15949G A22115M A23403G G25617T GGG28881AAC TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_559826
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF1DA/2020
 C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT G22335T A23403G C23730T G25563T A26319G C28854T G29044A

EPI_ISL_559827
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF1F8/2020
 C241T C904T C3037T C8683T G12613A C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC

EPI_ISL_559828
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF204/2020
 C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G G28077T GGG28881AAC C29518T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_559829
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF222/2020
 C241T A1163T C3037T T3256C C5622T G6943T G14202T C14408T G18538T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G AAAAAAAAAA29894-

EPI_ISL_559830
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF29B/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G A29897R A29903-

EPI_ISL_559831
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF2AA/2020
 G204T C241T T445C C3037T G3452A C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27012T C27944T C28932T G29645T A29892T A29897R AAAAA29899-

EPI_ISL_559832
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF2B9/2020
 C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A A29895V AAA29901-

EPI_ISL_559836
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF33E/2020
 AT1- C241T C3037T C3096T T7767C C8047T C14408T G14428T C17104T A20268G T22835C C22879A A23403G G26779C C26781T G27226T C27800A G28027T G29405C G29734C A29895R AAAA29900R

EPI_ISL_559839
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AF3B6/2020
 C241T C3037T G11230T C14408T A23403G T24088C C25572T G25617T A26760T C27213T GGG28881AAC

EPI_ISL_559855
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0BAB/2020
 G204T C241T T445C C2455T C3037T C6286T C14408T G21255C C21614T C21660T C22227T A23403G C24334T C26801G C27944T C28932T G29645T A29895T AAA29901-

EPI_ISL_559856
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0C5D/2020
 C241T A1163T C3037T T3256C C4002T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_559857
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0C6C/2020
 AT1- C241T T445C C3037T C6286T C13009T C14408T G18462T G21255C C22227T G22346T A23403G C26801G G28321A C28932T G29645T

EPI_ISL_559858
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0C7B/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29017A G29227T C29466T A29771G

EPI_ISL_559859
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0CA8/2020
 G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G G27754T C27944T C28932T G29645T AA29892MR

EPI_ISL_559860
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0CD5/2020
 C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T A29898M A29903-

EPI_ISL_559861
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0D0F/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G AAAAAA29898-

EPI_ISL_559862
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0D1E/2020
 C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A AA29902-

EPI_ISL_559863
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0D2D/2020
 C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T A29872H A29893W AAAAAAAA29896-

EPI_ISL_559864
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0D3C/2020
 G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G G27754T C27944T C28932T G29645T

EPI_ISL_559865
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0D5A/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G

EPI_ISL_559866
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0DF0/2020
 C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G

EPI_ISL_559867
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0E39/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C19185T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G A29899R

EPI_ISL_559868
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0F36/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_559869
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0F45/2020
 C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_559870
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0F54/2020
 C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G

EPI_ISL_559871
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0F63/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G AAA29882RTT AA29902-

EPI_ISL_559872
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B0F81/2020
 C241T C313T C3037T G13850A C14408T C18252T A23403G G26840T G28396A GGG28881AAC

EPI_ISL_559873
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B3FBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_559874
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B3FCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AAAAAAAAAAAAAAAAAAAA29884-

EPI_ISL_559875
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B3FD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- G204T C241T T445C C3037T A3405G C6286T C12733T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T G29862R ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_559876
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B4011/2020
 C241T T772C A2869G C3037T G6352T C6445T C10868T C11941T T14313C C14408T G15652T G22468T A23403G G23438T C25006T GGG28881AAC C29095T

EPI_ISL_559877
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B405D/2020
 C241T A408G T445C C3037T C6286T C14408T G21255C C22227T A23403G G24098T TT26485- C26801G G27877T C28932T G29645T A29903-

EPI_ISL_559881
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B41E1/2020
 C241T C1059T C3037T C3099T C4901T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C12099T C14230A C14408T C17939T G19056T G21800T A23403G G25563T G27632T C27804T C28744T C28830A G29402T G29779T AAAAAA29898-

EPI_ISL_559885
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B4284/2020
 C241T C763T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29706T G29734C A29872R AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_559886
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B4293/2020
 C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- AAAAAAAAAAAAAAAAAAAAAA29882-

EPI_ISL_559887
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B42C0/2020
 C241T C3037T C4543T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29706T G29734C

EPI_ISL_559888
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B42DF/2020
 C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T G17974T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A

EPI_ISL_559895
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B44AC/2020
 C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_559897
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B4794/2020
 C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T

EPI_ISL_559901
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/SHEF-C290F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G C24370T G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559912
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/SHEF-C69B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559920
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/England/SHEF-C7DB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T G17944T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560025
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AF0CE/2020
 G204T C241T T445C C3037T C6286T G6553A C7926T C9745T C13329T C14408T C15277T G21255C C22227T A23403G C23929T G26506T C26801G C27944T C28932T G29645T A29895M A29899R A29903-

EPI_ISL_560026
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AF0EC/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G AAAAAAAAAAAAAAA29889-

EPI_ISL_560027
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AF0FB/2020
 T13C C222T C241T T445C C3037T T5035C C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T

EPI_ISL_560028
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AF107/2020
 T13C C222T C241T T445C C3037T T5035C C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T

EPI_ISL_560029
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AF116/2020
 G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560030
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AF143/2020
 G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T A29895R A29899G

EPI_ISL_560031
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AF18F/2020
 G204T C241T T445C C3037T C6286T C6539T G8179T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560032
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AF19E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T C2973T C3037T G10870T C14408T C15324T A23403G C25549T C28887T G28975T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_560033
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AF1CB/2020
 G204T C241T T445C C3037T C6286T G10201T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_560034
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AF3C5/2020
 T13C C222T C241T T445C C3037T C6286T C14408T C17733T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T

EPI_ISL_560035
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AF5CF/2020
 G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T A29897G AAA29901-

EPI_ISL_560036
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0BD8/2020
 G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560037
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0BE7/2020
 G204T C241T T445C C3037T C6286T C8123T C14408T G21255C C21614T C22227T A23403G C26078T C26801G C27944T C28932T G29645T

EPI_ISL_560038
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0BF6/2020
 G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560039
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0C02/2020
 C241T C313T C835T C3037T G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T G24755T A25910G GGG28881AAC

EPI_ISL_560040
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0D4B/2020
 C241T C3037T C3411T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C

EPI_ISL_560041
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0D78/2020
 G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560042
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0D87/2020
 C241T C313T C3037T G3871T A4372G C5700A C9693T C14408T C16626T A23403G G26262T GGG28881AAC

EPI_ISL_560043
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0DC3/2020
 C241T C2706T C3037T C4084T C14408T A20268G A23403G C25731T C28833T C29247T

EPI_ISL_560044
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0DD2/2020
 T13C C222T C241T T445C C3037T T5035C C6286T C8606T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T AAAA29900-

EPI_ISL_560045
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0DE1/2020
 G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AAAA29900-

EPI_ISL_560046
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0E48/2020
 G204T C241T T445C C3037T C4012T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560047
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0E57/2020
 G204T C241T T445C C3037T C6286T C11396T A11595G C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560048
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0E75/2020
 T13C C222T C241T T445C C3037T T5035C C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29872-

EPI_ISL_560049
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0EA2/2020
 G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560050
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0EC0/2020
 C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T T19584C A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734T AAA29901-

EPI_ISL_560051
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0F18/2020
 G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_560052
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0F27/2020
 G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T A29899R A29903-

EPI_ISL_560053
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B0F72/2020
 G204T C241T T445C C3037T C6286T G8179T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560063
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B3D75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560069
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B4020/2020
 G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560139
 2020-09-03 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AA05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C4421T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_562173
 2020-09-03 2020-09-30
 Australia hCoV-19/Australia/VIC10540/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G G27282A GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_562603
 2020-09-03 2020-09-30
 Australia hCoV-19/Australia/VIC10922/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C16222T G16647T A17337G C18555T C22858T G22992A G23401A A23403G C24034T -25700CCC GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_562692
 2020-09-03 2020-09-30
 Australia hCoV-19/Australia/VIC10365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T GCTTTA22289- G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562716
 2020-09-03 2020-09-30
 Australia hCoV-19/Australia/VIC10851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563033
 2020-09-03 2020-09-30
 Australia hCoV-19/Australia/VIC10690/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T G7328T T7540C A13962G C14408T A16172G G16647T C18555T T21369C G22992A G23401A A23403G T28009C GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_563046
 2020-09-03 2020-09-30
 Australia hCoV-19/Australia/VIC10708/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7117C T7540C A11117R T11541G C14408T G16647T A17337G C17502T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563049
 2020-09-03 2020-09-30
 Australia hCoV-19/Australia/VIC10712/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C A10799R C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563053
 2020-09-03 2020-09-30
 Australia hCoV-19/Australia/VIC10720/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T4492Y T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563060
 2020-09-03 2020-09-30
 Australia hCoV-19/Australia/VIC10736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T G7328T T7540C A13962R C14408T A16172G G16647T C18555T T21369C G22992A G23401A A23403G T28009C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563074
 2020-09-03 2020-09-30
 Australia hCoV-19/Australia/VIC10757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C9561Y C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563080
 2020-09-03 2020-09-30
 Australia hCoV-19/Australia/VIC10770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563086
 2020-09-03 2020-09-30
 Australia hCoV-19/Australia/VIC10781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563128
 2020-09-03 2020-09-30
 Australia hCoV-19/Australia/VIC10857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23625T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563828
 2020-09-03 2020-09-30
 Australia hCoV-19/Australia/VIC13762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T3043C C5986T T7540C C9996T A10236G G14137A C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_566445
 2020-09-03 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1BD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T C16733Y G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566567
 2020-09-03 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B2417/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C15738T C17012T T18750C T20571C C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566674
 2020-09-03 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1A8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A17078G C19156T A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566998
 2020-09-03 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567080
 2020-09-03 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C81BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C13009T C14408T G18462T C18804T G21255C C22227T G22346T A23403G C26801G G28321A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567165
 2020-09-03 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C819F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567243
 2020-09-03 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C81AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_569631
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020327259/2020
 ATTAAAGGTTTAT1- A27C C241T C1059T C3037T T6118G C6896T C7279T C10319T C14408T C16308T C16694T C21859T G22992T A23403G G25563T A25986T G26109T A26990G GATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTC27632- C27964T C29870A

EPI_ISL_569632
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020321214/2020
 A1- C241T C1059T C3037T C5835T G8264T G9130T C10319T A14111T C14408T A18424G C21304T A23403G G25563T G25720T G25907T C26060T C27964T C28472T C28869T

EPI_ISL_569633
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020321219/2020
 ATTAAAGGTTT1- C241T C1059T C3037T T4874C C5835T G8264T G9130T C10319T C14408T A18424G C21304T A23403G G25563T G25720T G25907T C26060T C27964T C28472T C28869T C29870A

EPI_ISL_569634
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020321223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAA1- C241T C1059T C3037T C5835T G8264T G9130T C10319T C14408T A18424G C21304T A23403G C23664T G25563T G25720T G25907T C26060T C27964T C28472T C28869T C29870A

EPI_ISL_569635
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020322589/2020
 ATTAA1- C241T C1059T C3037T T4874C C5835T G8264T G9130T C10319T C14408T A18424G C21304T A23403G G25563T G25720T G25907T C26060T C27964T C28472T C28869T

EPI_ISL_569636
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020322592/2020
 ATTA1- C241T C1059T C3037T C5835T G8264T G9130T C10319T C14408T A18424G C21058T C21304T A23403G C23664T G25563T G25720T G25907T C26060T C27964T C28472T C28869T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_569637
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020324092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5835T G8264T G9130T C10319T C14408T A18424G C21058T C21304T A23403G C23664T G25563T G25720T G25907T C26060T C27964T C28472T C28869T C29870A

EPI_ISL_569638
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020324349/2020
 ATTAAAGGTTTATAC1- C241T C1059T C2939T C3037T C6896T C7279T C8123T C10319T C14408T C16308T C16694T G21974T A23403G G25563T A25986T C27964T C28657T C29870A

EPI_ISL_569639
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020324378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAA1- C241T C1059T T2737C C3037T C5835T G8264T G9130T C10319T C14408T A18424G C21304T A23403G C23664T G25563T G25720T G25907T C26060T C27964T C28472T C28869T C29870A

EPI_ISL_569640
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020326789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C1519A C3037T C3768T G6421T T6640A C7639T C8739T C10319T C11575T C14408T C17502T A20262G A20294G G21305A C22713T A23403G C24358A G25563T C27964T C28868T C29870A

EPI_ISL_569641
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020326823/2020
 C241T C1059T C3037T G4720T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T

EPI_ISL_569642
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020327022/2020
 ATTA1- C241T C3037T A7981G C10741T C14408T A20268G A23403G C23604A T24076C C28854T G29266A T29710C

EPI_ISL_569643
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020327026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C10377T C10741T C14408T A20268G A23403G C23604A T24076C C28854T G29266A T29710C C29870A

EPI_ISL_569644
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020327064/2020
 ATT1- C241T C1059T C3037T T6394C C6896T C7279T C10319T C14408T G15243T C16308T C16694T G21974K A23403G G25563T A25986T C27964T C28657T

EPI_ISL_569645
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020327107/2020
 ATTAAAGGTT1- C241T C1059T C3037T C6896T C7279T C10319T C14408T C16308T C16694T G21974T A23403G G25563T A25986T C27964T C28657T C29870A

EPI_ISL_569646
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020327163/2020
 ATTAAA1- C241T C1059T C2675T C3037T G8264T C10319T C14408T A18424G C21304T G22103A A23403G G25563T G25907T C26060T G26227T C27964T C28472T C28869T G29759T C29870M

EPI_ISL_569647
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020327257/2020
 AT1- C241T G2282A C3037T C9170T T9742C C10002T C10335T C14408T C17639T A23403G C29614T

EPI_ISL_569648
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020327510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C8739T C8982T A12820G C14408T C16762T A17637G C18265A A20289G C20762T C23315T A23403G G24764A G25494T G25563T T26146C G28703A C28887T G29474T C29870A

EPI_ISL_569651
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020328229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G3122T T6661C C7844T C10138T C10319T A13873G C14408T A18424G A20215C C21304T C21811T A23403G G25563T G25907T C27964T C28472T C28869T C29870A

EPI_ISL_569652
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020328244/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T T6661C C7844T C10138T C10319T A13873G C14408T A18424G A20215C C21304T C21811T A23403G G25563T G25907T C27964T C28472T C28869T C29870A

EPI_ISL_569656
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020328523/2020
 ATTAAAGGTTTATACC1- C241T C3037T G4300T C14408T T19839C A21551T A23403G A23756G G25726T A28154G GGG28881AAC G29260T G29648T C29835T

EPI_ISL_569659
 2020-09-03 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020328645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1059T C3037T C10319T C14408T A18424G C18698T C21304T G21853T A23403G C23896T G25563T G25907T C27964T C28292M C28472T C28869T G29395C C29870A

EPI_ISL_535196
 2020-09-04 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A09A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29769Y

EPI_ISL_535203
 2020-09-04 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A11F/2020
 ATTAAAGGTTTA1- C241T C3037T G4913T C8683T C14408T G15406T C21637T A23403G C25549T A28169G GGG28881AAC AAA29901-

EPI_ISL_535204
 2020-09-04 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A12E/2020
 ATTAAAGGTTTATACCT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_535219
 2020-09-04 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A23A/2020
 ATTAAAGGTT1- C241T C3037T C3096T G4255A C7334T G10265A C10449T C14408T A15972G C19374T C19718T C20270T G20433A A23063T A23403G A25859G T26504C C26858T C27434T G28300C T28759C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_535228
 2020-09-04 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A2C1/2020
 ATTAAAGGTTTATA1- C241T G922R C2040T C3037T G3323T G3566A C5183T A6411G C8123T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC AAA29901-

EPI_ISL_535239
 2020-09-04 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C3037T G3323T G3566A C5183T A6411G C9891T C10369T T10936C C14408T C17626T G18674A C21998T A23403G A28860G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536433
 2020-09-04 2020-09-16
 Singapore hCoV-19/Singapore/892/2020
 ATTAAAGGTTTATACCT1- C241T C3037T G3685T C8917T G9389A C14408T A23403G C25904T C26124T G27870T GGG28881AAC G28899T AAAAAAAAAAAA29892-

EPI_ISL_536442
 2020-09-04 2020-09-16
 Singapore hCoV-19/Singapore/901/2020
 ATTA1- C241T C1593T C2940T C3037T C5730T T9100C C14184T C14408T C18877T C22444T G22992T A23403G G25494T G25563T G25699T C26028T C26735T A28704G C28854T AAAAAAAAAAAA29892-

EPI_ISL_536707 MW035505
 2020-09-04 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1336/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T C23127G A23403G G26049T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536708 MW035506
 2020-09-04 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1337/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5691T C13665T C14408T C23127G A23403G G26049T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536745 MW035540
 2020-09-04 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6032A C7777T T12805C C14408T A23403G C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536757 MW035550
 2020-09-04 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1386/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1348T C3037T C10319T C11919T A12737G C14408T A18424G G18903A C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536759 MW035552
 2020-09-04 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1388/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T C6187T C11674T C11956T C12025T C14408T G19162T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536764 MW035577
 2020-09-04 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1393/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C13665T C14408T C23127G A23403G G26049T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536768 MW035560
 2020-09-04 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1397/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4719T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536781 MW035573
 2020-09-04 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T6343C G8083A C10319T T13339A C14408T C14805T A18424G C18687T T19059C C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536782 MW035574
 2020-09-04 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1412/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3190G C3695T C9994T C10319T C14408T A18424G C19868T A21037G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540796
 2020-09-04 2020-09-21
 United Kingdom hCoV-19/Scotland/CVR3999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C12400T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540882
 2020-09-04 2020-09-21
 United Kingdom hCoV-19/Scotland/EDB7739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547775
 2020-09-04 2020-09-24
 United States hCoV-19/USA/WI-GMF-18675/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T A696C C3037T G3871T T3931C C4226T C5672T C6990T A7837C C14408T G19677T A23403G G25947T C28977T G29744T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547776
 2020-09-04 2020-09-24
 United States hCoV-19/USA/WI-GMF-18719/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A696C C3037T G3871T T3931C C4226T C5672T G6352A A7837C C14408T G19677T A23403G C27276T C28977T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_547777
 2020-09-04 2020-09-24
 United States hCoV-19/USA/WI-GMF-18723/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C4719T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28869T G29402T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547778
 2020-09-04 2020-09-24
 United States hCoV-19/USA/WI-GMF-18724/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A831G T1562C G2035T C3037T A3262G T3745C C11674T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547780
 2020-09-04 2020-09-24
 United States hCoV-19/USA/WI-GMF-18733/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T C6990T A7837C C14408T G19677T A23403G G25947T C28977T G29744T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_547781
 2020-09-04 2020-09-24
 United States hCoV-19/USA/WI-GMF-18735/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A831G T1562C G2035T C3037T A3262G T3745C C11674T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547783
 2020-09-04 2020-09-24
 United States hCoV-19/USA/MN-GMF-18787/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T G1550A C3037T A5718T C9080T C13665T C14408T C15240T G19788T A19899T A21464G C23315T A23403G G25563T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547784
 2020-09-04 2020-09-24
 United States hCoV-19/USA/WI-GMF-18789/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C4719T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28869T G29402T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547788
 2020-09-04 2020-09-24
 United States hCoV-19/USA/IA-GMF-18913/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G1738T C3037T C14408T C16575T A19736G T19839C T20252G A23403G A23756G G25947T G28378T GGG28881AAC C29358T G29751T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549220 MW040648
 2020-09-04 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1438/2020
 ATTAAAG1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28887T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_549331
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B1FF9/2020
 C241T T1615C C3037T TTGAAGTGAATAGTT3333- C4686T C7765T C14408T C17690T C18877T A23403G G25563T G25770T C25904T G27261T AAAAAAAAAAAAAAAA29888-

EPI_ISL_549347
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B2338/2020
 C241T C3037T C3267T A3996G C11704T C14408T C18877T C20703T C21034T G22113T C22444T T22882G A23403G G25563T G26173T C26735T G28183T T28277C C28854T

EPI_ISL_549390
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMB-1B5DA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1288T C3037T C11050T C11514T C13426T C14408T C14937T G21893A C22783T A23403G C24904T T27597C GGG28881AAC A29056G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549396
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B1E38/2020
 C241T T445C C3037T G4006T C5170T C6286T C7047A G11132T C14408T G21255C C22227T C22480T A23403G G24933T G26227T T26609C C26801G C28313T C28932T G29645T A29898R AA29902-

EPI_ISL_549397
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B1E65/2020
 C241T C3037T C3393T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC

EPI_ISL_549398
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B1E92/2020
 C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC

EPI_ISL_549399
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B1EA1/2020
 C222T C241T T445C C3037T C6286T C14408T C14802A C21855T A23403G A25505G G25906C G25996T C28651T C28869T A29898R A29903-

EPI_ISL_549400
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B1EB0/2020
 C241T T445C C3037T C6286T C14408T G18782T G21255C C22227T G22346T A23403G C26801G C28932T C29376T G29645T A29903-

EPI_ISL_549401
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B1EFC/2020
 G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_549402
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B1F08/2020
 C241T C313T T365A C3037T G5164A G8017T C8208T G11042T G11083T C11208T A12097G C14408T A23403G G25455T G26918T T28516C AG28877TC GGG28881AAC C29144T G29745T C29754A C29870A

EPI_ISL_549404
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B1FEA/2020
 C241T C3037T C3784T A5650C C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC

EPI_ISL_549405
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B2004/2020
 C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C24023T C26060T G27987T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_549406
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B22D1/2020
 G204T C241T T445C C3037T C6286T C7926T C9745T G11083T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_549407
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B22FF/2020
 C241T C3037T C4543T C5621T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T AAAAAAAAAAAAAAAAAAAAAAAA29880-

EPI_ISL_549408
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B2365/2020
 C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A

EPI_ISL_549410
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B2462/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C19185T G19542T C19718T C22388T A23403G T25202G C26060T GGG28881AAC G29227T C29466T A29771G GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_549411
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B24F9/2020
 C241T T2058C C3037T C6696T C14408T T18083C C18568T G20274T A23403G G24368T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_549412
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B2514/2020
 C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C25275T C26801G C28932T G29645T

EPI_ISL_549413
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/CAMC-9B29EB/2020
 C241T T383C C3037T C4543T G5629T G9526T G11083T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A

EPI_ISL_549467
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C4825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204C C241T C1288T C2453T C3037T T3163C C4345T C9836T C12053T C14408T G22468T A23403G T25150C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549648
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B92E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549655
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9CDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T A20566G G21624T A23403G C26571A C27575T GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549678
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550023
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A56D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G A27472G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550025
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5778/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T A13753G C14408T G21255C C22227T A23403G T26609C C26801G A27609C C28932T C29200Y G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550041
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/Wales/MILK-9A574B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T C15579T G21255C C21614T T21673C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550113
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5787/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550219
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A5769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G C24904Y G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550253
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A52A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T4303C T7783C C14408T A15984T C20946T C22075T A23403G GC25552TT C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559880
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B4196/2020
 C241T T1615C C3037T TTGAAGTGAATAGTT3333- C4686T C7765T C14408T C17690T C18877T A23403G G25563T C25904T

EPI_ISL_559883
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B4266/2020
 C241T C904T C3037T C8683T C14408T G15406T G21255T C21637T A23403G A28169G GGG28881AAC

EPI_ISL_559884
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B4275/2020
 C1191T T5448C C5544T C8782T G11230T A11908G C18486T A23476T T28144C G28167A G28878A C29730- G29742A A29903-

EPI_ISL_559889
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B43AF/2020
 C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC

EPI_ISL_559890
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B43CD/2020
 C241T C3037T G11230T C14408T A23403G T24088C G25617T A26760T C27213T GGG28881AAC A29871W AAAA29874WMWM AAAAAAAAAAAAAAAAAAA29885-

EPI_ISL_559891
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B4406/2020
 C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_559892
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B4433/2020
 C241T T445C A1987G C3037T C6286T C14408T G19816T G21255C C22227T A23403G G23587C C26801G G27877C C27944T C28932T G29645T

EPI_ISL_559893
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B447F/2020
 C241T A2497G C3037T T7767C C8047T G10617A G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C

EPI_ISL_559894
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B448E/2020
 AT1- C203T C241T C832T G3004T C3037T C4002T C4890T G7936T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29870-

EPI_ISL_559896
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B457C/2020
 C241T C3037T C4002T A5725G G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C A29893T A29897W

EPI_ISL_559928
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/England/SHEF-CB2DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC G29543T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560072
 2020-09-04 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B4187/2020
 G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AAAAAAAAAAAAA29891-

EPI_ISL_562912
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10439/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T C14768T C15738T G16647T C18555T C18657T A21137G G22992A G23401A A23403G T23677A C23895T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_562914
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29513T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562916
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562920
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G28326T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_562934
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T14211W C14408T C15324T G16647T C18555T A20559G G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562935
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G A26759T C28005Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562957
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C2227T C3037T T7540C A13488G G13570R C14408T G16647T C18555T C18568T G21850A G22992A G23401A A23403G C24897T C25624T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563024
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563034
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10691/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T C21207T C22792T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563040
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T C21207T C22792T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563063
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5392T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563118
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C506T A1163T C1288Y C3037T C7600T G7798T C14408T A23403G T23548C G25311K GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563144
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3860T T7540C C8152T A13974G C14408T C15352T G16647T C18555T C18601Y C21812T G22992A G23401A A23403G G24992C A26162G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_563148
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_563156
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10926/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22227T T22372Y G22992A C23043Y G23401A A23403G GGG28881AAC C29347T G29692T G29777T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563157
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10928/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T G3564K C5144T T7540C G11335T C14408T G16647T C18555T T21369C G22992A G23401A A23403G C24337T G24933K GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563158
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC10931/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C G11335T C14408T G16647T C18555T T21369C G22992A G23401A A23403G C24337T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563813
 2020-09-04 2020-09-30
 Australia hCoV-19/Australia/VIC13714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C2062T C3037T T7540C A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_566423
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B25AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566444
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B22C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3411T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566453
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1CA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T T16926C G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566467
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1B13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T T1771A C1912T C2306T C3037T G4105T G4180T T10453C C11195T C14408T T16993C C21727T A23403G G25720T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566493
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1ADA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T C27247Y GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566500
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1D2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C1121T A2895G C3037T C6395T G7393T C11020T A12410G C14408T C17125T C17550T A18366G C18486T C18788T T19839C T21093C A23403G C25703T G27561T C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566518
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1BF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566519
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1D1D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566524
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B25C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566528
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1C6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635Y T1947C C3037T T4008Y C7528T C7764Y G9479T C14408T C18877T C22444T A23403G G25563T C26735T C27208Y C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566543
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1D77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C10228T G12067T C14408T C18877T G21867T C22444T A23403G G25563T C26735T C27427T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566544
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1AE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566586
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1D0E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566589
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1B22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T A15753G G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566610
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1D95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566611
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1C3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566638
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1B31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204C C241T C1288T C3037T T3163C C4345T C9836T C12053T C14408T G22468T A22759G A23403G T25150C T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566659
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1C4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C593T T1947C C3037T C7528T C14408T C18877T T19383C C22444T A23403G G25455T G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566661
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1AF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T T14313C C14408T G15652T G22468T A23403G G23438T C25006T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566662
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B22A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C9360T G9479T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566666
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B1C10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C125T C241T T445C C3037T A4992G C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566880
 2020-09-04 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3D72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T A5725G G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568577
 2020-09-04 2020-10-02
 Czech Republic hCoV-19/Czech Republic/NRL-8631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C335T G1048T C2416T C3037T T6890C G8371T C9430T C12919A C14408T A15477T G16288T C18395T AGA20622TTT C21597T A23403G C23730T G25563T C25624T A26319G C28854T G29044A TATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29791-

EPI_ISL_569225
 2020-09-04 2020-10-02
 France hCoV-19/France/IHU-1607/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C10582T T14313C C14408T C16575T T17169C G20274T A23403G G25563T C25710T C27804T C28830A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569227
 2020-09-04 2020-10-02
 France hCoV-19/France/IHU-1610/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T G2600T C2706T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22918T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569228
 2020-09-04 2020-10-02
 France hCoV-19/France/IHU-1615/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G7798T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C17502T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569653
 2020-09-04 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020328404/2020
 ATTA1- C241T C1059T C1385T G1738T C3037T G3242A C9979T C11916T C14408T C20762T C22227T A23403G G25266T G25563T C28087T T29360Y C29870A

EPI_ISL_569655
 2020-09-04 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020328416/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C1385T G1738T C3037T G3242A C9979T C11916T C14408T C22227T A23403G G25266T G25563T C28087T T29360Y C29870A

EPI_ISL_569660
 2020-09-04 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020328767/2020
 ATTAAAGGTTTATAC1- C241T C398T C3037T A9058G C14408T C18115T C18486T A20268G C21575T T22162C A23403G C28854T

EPI_ISL_569661
 2020-09-04 2020-10-02
 United States hCoV-19/USA/NM-NMDOH-2020329070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C6145T A12820G C12880T C14408T GC15016TT C16762T A17637G G20670A C20762T C21161T A23403G G25563T C27143T C28887T C29870A

EPI_ISL_534723
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/England/203690348/2020
 ATTAAAGGTTTA1- C241T C1191T C3037T G3251A T5278C G12067T G13348T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_534724
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/England/203690351/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1191T C3037T G3251A T5278C GT5743SY G12067T G13348T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC AAAAAAAAAAAAAA29890-

EPI_ISL_534725
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/England/203690354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C1191T C3037T G3251A T5278C G6479R G12067T G13348T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_534726
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/England/203690358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- C241T C1191T C3037T G3251A T5278C G12067T G13348T C14408T C21575T C21637T C22227T G23282T A23403G C23525T C26801T A28169G GGG28881AAC AAAAAAAAAAAAAAA29889-

EPI_ISL_534727
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/England/203690360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T C1191T C3037T G3251A T5278C G12067T G13348T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_534728
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/England/203690361/2020
 ATTAAAGGTTTATACCT1- C241T C1191T C3037T G3251A T5278C G12067T G13348T C14408T C19524T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_534729
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/England/203690368/2020
 ATT1- C241T C1191T C3037T G3251A T5278C G12067T G13348T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC C29284T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_535184
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-169FDA/2020
 ATTAAAG1- C241T C3037T C8683T C14408T G15406T C21637T A23403G G24872T A28169G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_535188
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A012/2020
 ATTAA1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C14676T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_535189
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A021/2020
 ATTA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_535190
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A030/2020
 ATTAAAGGTTTATACCTTCCCAG1- G204T C241T T445C C3037T C6286T G11083T T11577Y C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_535192
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A05E/2020
 ATTAAAGG1- C241T A1163T A2404R C3037T T3256C C5622T G11083T C12459T G14202T C14408T C16604Y G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_535195
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A08B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_535197
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A0A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T C401T T445C C3037T C6286T G11083T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AAAAAAAAAAAAAAAAAAAAAAAAAAAA29876-

EPI_ISL_535198
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A0B8/2020
 ATTA1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T

EPI_ISL_535199
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A0D6/2020
 ATTAAAGGTTTATACCTTC1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AAAAAAAAAAAAAA29890-

EPI_ISL_535206
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A14C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_535207
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A16A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G204T C241T T445C C3037T C6286T G11083K C14408T C15480T G21255C C21614T C22227T C22329Y A23403G C26801G C27944T C28932T G29645T C29870M

EPI_ISL_535209
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C8683T C14408T G15406T C20429T C21637T A23403G G24872T C25350Y A28169G GGG28881AAC AAA29901-

EPI_ISL_535210
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_535215
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A1F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T G11083T C14408T C15480T G18898T G19086T G21255C C21614T C22227T C22329Y A23403G C26801G C27944T C28932T G29645T AAA29901-

EPI_ISL_535218
 2020-09-05 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A22B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- G204T C241T T445C C2973T C3037T C6286T G12315A C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_536741 MW035536
 2020-09-05 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4898A G6032A C7777T T12805C C14408T A23403G C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536746 MW035541
 2020-09-05 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1375/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6032A C7777T C14408T A23403G C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536753 MW035546
 2020-09-05 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1382/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T C18508T G19174T A23403G G24883T C28868T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536755 MW035548
 2020-09-05 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1384/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6032A C7777T T12805C C14408T A23403G C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536758 MW035551
 2020-09-05 2020-09-16
 United States SARS-CoV-2/human/USA/FL-UW-1387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T A23403G G23900C A24253T G25563T C27078T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536778 MW035570
 2020-09-05 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1408/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C4655T C7086T C10277T T14191C C14408T C15654T C16092T C16260T C17550T A18432G A23403G G23900C A24253T G25563T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547786
 2020-09-05 2020-09-24
 United States hCoV-19/USA/IA-GMF-18813/2020
 ATTAAAGGTTTATACCT1- C241T A696C C1427T C3037T G3871T T3931C C6285T C14408T C19524T C20429T A23403G C23683T C23929T C28977T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547789
 2020-09-05 2020-09-24
 United States hCoV-19/USA/WI-GMF-18957/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T A696C C1594T C3037T G3871T T3931C C4226T G5332A C5672T C6990T A7837C C14408T G19677T A23403G G25947T C28977T G29744T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548069
 2020-09-05 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549392
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/CAMB-1B5DD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G C23220T A23403G C23731T C25000T G25567A C28849G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549393
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/CAMB-1B5DE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G25567A G25593C C28849G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549464
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C47BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T T21388C C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549571
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9C18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A3405G C6286T C10448T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549572
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549629
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B87FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7113T C9803T G11083T C12493A T14100C C14408T C16349T A20268G T20988C C21614T G21778A A23403G G25290T C28846T C28854T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549633
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8EF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549638
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9B1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T T16993C G18859T G21624T A23403G C26571A GGG28881AAC C29077T C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549664
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B855A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C6286T C14408T G21255C C22088T C22227T A23403G C26801G C28932T G29645T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549686
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T T4330C C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549689
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B87EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T C29548T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549695
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9EF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549697
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B83E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T A10978T C14408T C16469T C17104T G18803T T19016A A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549712
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C5365T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549714
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B889D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G704A C1545T C2836T C3037T G8548A T11541G C14408T C15240T T16335C C17550T C18877T C22444T A23403G G24087A G25563T C26735T C28093T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549743
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9C36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549757
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B847B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G370T C3037T G5206T A8993G C14408T C18877T A23403G G25563T C26735T C26885T G28875T C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549765
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5100T C5170T C6286T G11083K G11132T C14408T G21255C C22227T A23403G G25987T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549780
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8B94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549795
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B90FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549806
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B929E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C7303T C14408T A23403G G25617T GGG28881AAC C29421T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559799
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACB93/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G AAAAAAAAAAAAA29891-

EPI_ISL_559800
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACBC0/2020
 C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A

EPI_ISL_559801
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9ACBEE/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29017A G29227T C29466T A29771G

EPI_ISL_559818
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AD0DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- C241T C835T C3037T C14408T A23403G G25617T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_559819
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AD172/2020
 C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T

EPI_ISL_559820
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AD1BE/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29017A G29227T C29466T A29771G ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_559821
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AD224/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G

EPI_ISL_559822
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AD242/2020
 C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29869-

EPI_ISL_559823
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AD27F/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G

EPI_ISL_559824
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9AD2E8/2020
 C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A

EPI_ISL_559910
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/SHEF-C683B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559931
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/England/SHEF-CC1EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5230T C8683T A13928G C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560004
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9ACC45/2020
 C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC A29903-

EPI_ISL_560010
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9ACF2E/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G A29893W A29896W AAAA29900-

EPI_ISL_560011
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9ACF5B/2020
 G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560012
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9ACF97/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G A29894W AAAAAA29898-

EPI_ISL_560013
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AD00C/2020
 G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560014
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AD01B/2020
 G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560015
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AD02A/2020
 G204T C241T T445C C3037T C6286T G10642T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560016
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AD039/2020
 G204T C241T T445C C3037T C6286T A8093C C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560017
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AD066/2020
 C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC A29903-

EPI_ISL_560018
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AD075/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_560019
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AD0C0/2020
 G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T G22216T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560020
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AD118/2020
 C241T T445C C3037T C6286T C14408T C15738T G21255C C22227T A23403G C26801G G27364T C28932T G29645T

EPI_ISL_560021
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AD1CD/2020
 G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G T24769C C25460T C26801G C27944T C28932T G29645T

EPI_ISL_560022
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AD1DC/2020
 G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560023
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AD29D/2020
 C241T G2632T C2973T C3037T G10870T C14408T C15324T A23403G C25549T C28887T G28975T

EPI_ISL_560024
 2020-09-05 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9AD2CA/2020
 G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560470
 2020-09-05 2020-09-29
 Switzerland hCoV-19/Switzerland/BS-ETHZ-280043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T1552C T2402R C2710T C3037T C5730T C14408T C18877T C19220Y T22191A C22444T A23403G G25563T C26735T C27131T G28628T C28854T G29348T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560541
 2020-09-05 2020-09-29
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-280045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C2704Y C3037T G3892T C6286T C14408T C14802A C21855T A23403G A25505G G25906S G25996T C28651T C28869T A29488R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_562599
 2020-09-05 2020-09-30
 Australia hCoV-19/Australia/VIC10479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C16222T G16647T A17337G C18526T C18555T C22858T G22992A G23401A A23403G C24034T T24769C -25700CCC G27670C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_562712
 2020-09-05 2020-09-30
 Australia hCoV-19/Australia/VIC10646/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G G23593T GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562913
 2020-09-05 2020-09-30
 Australia hCoV-19/Australia/VIC10440/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563000
 2020-09-05 2020-09-30
 Australia hCoV-19/Australia/VIC10627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7321T T7540C C11665Y A14084G C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_563022
 2020-09-05 2020-09-30
 Australia hCoV-19/Australia/VIC10661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC G29688K TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563027
 2020-09-05 2020-09-30
 Australia hCoV-19/Australia/VIC10671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTT1- C241T A1163T C3037T C5392T T7540C T10717C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563030
 2020-09-05 2020-09-30
 Australia hCoV-19/Australia/VIC10681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563038
 2020-09-05 2020-09-30
 Australia hCoV-19/Australia/VIC10698/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563061
 2020-09-05 2020-09-30
 Australia hCoV-19/Australia/VIC10737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T G2659T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563084
 2020-09-05 2020-09-30
 Australia hCoV-19/Australia/VIC10775/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7117C T7540C T11541G C14408T G16647T A17337G C17502T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563150
 2020-09-05 2020-09-30
 Australia hCoV-19/Australia/VIC10910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C6033T T7540C G9141R C13862Y C14408T C14980T G16647T C18555T C18568T G22992A G23401A A23403G C23457A C24026T GGG28881AAC C29774T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563153
 2020-09-05 2020-09-30
 Australia hCoV-19/Australia/VIC10917/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3860T T7540C C8152T A13974G C14408T C15352T G16647T C18555T C21812T G22992A G23401A A23403G G24992C A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_566580
 2020-09-05 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C26F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10156T C14408T A20742C A23403G GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566625
 2020-09-05 2020-10-01
 United Kingdom hCoV-19/England/CAMC-9B2839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C19032T G19542T C19718T C22388T A23403G G25630C C26060T G26918T T28144C GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566975
 2020-09-05 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C311C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C5365T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566980
 2020-09-05 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C33CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4406T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568282
 2020-09-05 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B9E5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T A15002G G15406T C21637T G22225T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535186
 2020-09-06 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-169FF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_535193
 2020-09-06 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A06D/2020
 ATTA1- G204T C241T T445C C3037T C6286T C8683T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29679T

EPI_ISL_535213
 2020-09-06 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A1C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29870M

EPI_ISL_535236
 2020-09-06 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_535245
 2020-09-06 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A3EC/2020
 ATTAAAGGTT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_535254
 2020-09-06 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A470/2020
 ATTAAAGGTTTA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29743T AAA29901-

EPI_ISL_535261
 2020-09-06 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A4E9/2020
 ATTAAAGGTT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_536432
 2020-09-06 2020-09-16
 Singapore hCoV-19/Singapore/891/2020
 ATTAAAGGT1- T2029A A3061G C6310A C6312A C7851T A8738W G10496A G11083T C12880Y C13730T C19524T C23929T C28311T AAAAAAAAAAAA29892-

EPI_ISL_536438
 2020-09-06 2020-09-16
 Singapore hCoV-19/Singapore/897/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C936T T1094C C3037T C8299T C8626T C8917T C9166T C10039T C14408T C18129T C21621T A23403G C25638T C28289T GGG28881AAC C29095T AAAAAAAAAAAA29892-

EPI_ISL_536736 MW035532
 2020-09-06 2020-09-16
 United States SARS-CoV-2/human/USA/NJ-UW-1365/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G3871T T3931C C5672T G6352A C10319T C14408T G19677T C21304T A23403G G25563T C27964T C28472T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536742 MW035537
 2020-09-06 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T GTCATGTTA510- C1288T C3037T C11050T C13426T C14408T C14937T C21811T G21893A C22783T A23403G C24904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536744 MW035539
 2020-09-06 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1373/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T C18508T G19174T A23403G G24883T C28868T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536747 MW035542
 2020-09-06 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C4655T C7086T C10277T T14191C C14408T C15654T C16092T C16260T C17550T A18432G A23403G G23900C A24253T G25563T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536748 MW035543
 2020-09-06 2020-09-16
 United States SARS-CoV-2/human/USA/IL-UW-1377/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C664T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T A23403G G23900C A24253T G25563T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536752 MW035545
 2020-09-06 2020-09-16
 United States SARS-CoV-2/human/USA/NY-UW-1381/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T G23126T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536756 MW035549
 2020-09-06 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T C18508T G19174T A23403G G24883T C26370T C28868T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536760 MW035553
 2020-09-06 2020-09-16
 United States SARS-CoV-2/human/USA/NY-UW-1389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T G23126T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536762 MW035555
 2020-09-06 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1391/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2282A C3037T T9742C C14408T C17639T C18508T G19174T A23403G G24883T C25214T C28868T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536772 MW035564
 2020-09-06 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T A23403G G23900C A24253T G25563T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536773 MW035565
 2020-09-06 2020-09-16
 United States SARS-CoV-2/human/USA/NY-UW-1403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T G23126T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536780 MW035572
 2020-09-06 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T G21624T A23403G G23900C A24253T G25563T G28681T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540901
 2020-09-06 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_540903
 2020-09-06 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A540/2020
 ATTAAAGGTTTATACC1- C241T T445C C3037T C5170T C6286T C10078T G11132T G11417T C14408T G21255C G22051T C22227T A23403G C26801G C27679T C28932T G29645T

EPI_ISL_540905
 2020-09-06 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A56E/2020
 ATTAAAGGTTTATACCTTCCCAGG1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28399Y C28932T G29645T A29903-

EPI_ISL_540919
 2020-09-06 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A64D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T AAA29901-

EPI_ISL_547790
 2020-09-06 2020-09-24
 United States hCoV-19/USA/WI-GMF-18990/2020
 ATTAAAGGTTTATACC1- C203T C241T C1059T G1439T C2607T C3037T C14408T A14634G C18555T C22432T A23403G G25563T C28892T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548075
 2020-09-06 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G6352T A6528G G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T C25708T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549591
 2020-09-06 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8BD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1468G C3037T G11230T C14408T C14676Y A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549592
 2020-09-06 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8D70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549634
 2020-09-06 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B99D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549666
 2020-09-06 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8E9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T A3558G G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549702
 2020-09-06 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8AB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T A28165G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549705
 2020-09-06 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B99C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T C4901T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C12099T C14230A C14408T C17939T G19056T G21800T A23403G G25563T G27632T C27804T C28744T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549711
 2020-09-06 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8F89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_550164
 2020-09-06 2020-09-28
 United Kingdom hCoV-19/England/MILK-9A8520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T C15346T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559927
 2020-09-06 2020-09-28
 United Kingdom hCoV-19/England/SHEF-C9C96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T T13890C C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559932
 2020-09-06 2020-09-28
 United Kingdom hCoV-19/England/SHEF-CC5B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C17123T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560006
 2020-09-06 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9ACDBB/2020
 G204T C241T T445C C3037T C6286T C10078T C11396T G14055T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560477
 2020-09-06 2020-09-29
 Switzerland hCoV-19/Switzerland/GR-ETHZ-280120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C4993T C6286T C13671Y C14408T C14805T G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_563003
 2020-09-06 2020-09-30
 Australia hCoV-19/Australia/VIC10636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C11626Y C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC C29838M TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563018
 2020-09-06 2020-09-30
 Australia hCoV-19/Australia/VIC10655/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18086Y C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563028
 2020-09-06 2020-09-30
 Australia hCoV-19/Australia/VIC10676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563048
 2020-09-06 2020-09-30
 Australia hCoV-19/Australia/VIC10711/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3738Y T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563055
 2020-09-06 2020-09-30
 Australia hCoV-19/Australia/VIC10723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563085
 2020-09-06 2020-09-30
 Australia hCoV-19/Australia/VIC10777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C7267Y T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C G28346K GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563095
 2020-09-06 2020-09-30
 Australia hCoV-19/Australia/VIC10796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563098
 2020-09-06 2020-09-30
 Australia hCoV-19/Australia/VIC10801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C683Y A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563159
 2020-09-06 2020-09-30
 Australia hCoV-19/Australia/VIC10932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T T7540C G11335T C14408T G16647T C18555T T21369C G22992A G23401A A23403G C24337T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563160
 2020-09-06 2020-09-30
 Australia hCoV-19/Australia/VIC10936/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563296
 2020-09-06 2020-09-30
 Australia hCoV-19/Australia/VIC11203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C10198T C11884A C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_566768
 2020-09-06 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C37A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C218T C241T C3037T G3053T C4002T G5950T G10097A C11620T C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566934
 2020-09-06 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C T1114A C3037T C6286T C14408T C17285T C19164T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_534756
 2020-09-07 2020-09-14
 United Kingdom hCoV-19/England/NOTT-112FFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- AAGTCATTT686- ATG1605- G2051A T4949C T10836C C16887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_535220
 2020-09-07 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A249/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C5170T C6286T C10078T G11132T G11417T C14408T G21255C G22051T C22227T A23403G C26801G C28932T G29179T G29645T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_535226
 2020-09-07 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A2A3/2020
 ATTA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_535248
 2020-09-07 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A416/2020
 ATTAAAG1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_535249
 2020-09-07 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A425/2020
 ATTAAAGGTTT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29874-

EPI_ISL_535251
 2020-09-07 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G204T C241T T445C C3037T C6286T G11083T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_535257
 2020-09-07 2020-09-14
 United Kingdom hCoV-19/Wales/PHWC-16A4AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G204T C241T T445C C3037T C6286T G11083T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C26882T C27944T C28932T G29645T AAAAAAAAAAAAAAAAAAAAAAAAA29879-

EPI_ISL_536434
 2020-09-07 2020-09-16
 Singapore hCoV-19/Singapore/893/2020
 ATTA1- C241T T1947C C3037T C11173T G12070T G12769T C14408T T16224Y C18877T G20269T C21595T C22444T A23403G G23868T G25563T C26256T C26735T C28854T C29245T AAAAAAAAAAAA29892-

EPI_ISL_536446
 2020-09-07 2020-09-16
 Singapore hCoV-19/Singapore/905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- T150Y C241T C1191Y C2973T C3037T C6990T C10030T C14408T C14768Y T19468Y C19524T C20312T C21597T A23403G T27682C C28163T C28289T GGG28881AAC C29144T AAAAAAAAAAAA29892-

EPI_ISL_536724 MW035521
 2020-09-07 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1288T C3037T C11050T C13426T C14408T C14937T C21811T G21893A C22783T A23403G C24904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536732 MW035528
 2020-09-07 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4898A G6032A C7777T T12805C C14408T A23403G C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536733 MW035529
 2020-09-07 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536737 MW035533
 2020-09-07 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1366/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C18377T C21304T A23403G G25563T C27964T A28389T C28472T G29715T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536738
 2020-09-07 2020-09-16
 United States hCoV-19/USA/WI-UW-1367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C745T C1059T C1385T G1738T C3037T G3242A C5628T C11916T T12169C C14408T C17734T A23403G G25563T C27960T C28087T G28681A C28887T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536761 MW035554
 2020-09-07 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1390/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1157A C3037T G8083A C10319T C14408T C14805T A18424G T19215C G19816T C21304T A23403G G25563T C25710T G25907T C26882T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536763 MW035556
 2020-09-07 2020-09-16
 United States SARS-CoV-2/human/USA/MO-UW-1392/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T A23403G G23900C A24253T G25563T G28681T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536774 MW035566
 2020-09-07 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T G23126T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540721
 2020-09-07 2020-09-21
 United Kingdom hCoV-19/England/SHEF-C1988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540883
 2020-09-07 2020-09-21
 United Kingdom hCoV-19/Scotland/EDB7743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540884
 2020-09-07 2020-09-21
 United Kingdom hCoV-19/Scotland/EDB7745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1847G C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540904
 2020-09-07 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A55F/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_540906
 2020-09-07 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A57D/2020
 ATTAAAGGTTTATACCT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28253T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_540908
 2020-09-07 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A59B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C3037T C3096T G4255A C7334T G10265A C10449T C14408T A15972G C19374T C19718T C20270T G20433A A23063T A23403G A25859G T26504C C26858T C27434T G28300C T28759C GGG28881AAC

EPI_ISL_540912
 2020-09-07 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A5D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- G204T C241T T445C T1391C C3037T C4784T C6286T C7926T C9745T G11243T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_540920
 2020-09-07 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A65C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_547792
 2020-09-07 2020-09-24
 United States hCoV-19/USA/WI-GMF-19175/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A696C C3037T G3871T T3931C C6285T C14016T C14235T G18498T C19524T C20178T C20429T A23403G G24770T C26028T G28347A C28977T G29736T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549224 MW040652
 2020-09-07 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1442/2020
 ATTA1- C241T C1347T C3037T C14408T G22111T T22843C A23403G C25452T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549343
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C4940/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G8861A G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549344
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/NORW-EF68D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T C15356T G15598A C17104T G17427A G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549460
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C4676/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28432T GGG28881AAC G28903T G29017A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549462
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C4782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G G25494T C26228T T26609C C26801G A27609C C28932T G29645T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549463
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C47A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549465
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C47EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1731G T1947C C3037T C7528T C14408T C17733T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549468
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C4834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C710A C1191T A2550C C3037T G3251A C12924T C14408T C21575T C21637T A23403G C23525T A28169G GGG28881AAC C28905T G29781T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549547
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T C20823T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549548
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9216/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549549
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9A4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C C21952T A23403G G24781T C28087T C28310T GGG28881AAC A29521T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549550
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B899A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T C18329T A23403G T24088C G25617T T26495C GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549551
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8BFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549554
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9C54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T C19854T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549557
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8BA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C7935T G9802T G12067T C14408T A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549558
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9234/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T9115A G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549559
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9C90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T A13768G C14408T C18086T C18877T C22444T A23403G G25563T C26735T C28854T C29555T G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549560
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9CEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T T11522G C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549561
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B937D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C11289T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549562
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B91A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1847G C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549563
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8DE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549564
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8A79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14097T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549565
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B83BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TAAAGACCTTCTAGCACGTGCTGG868- C904T C3037T C8683T C14408T G15406T G19656T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549567
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B843F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549569
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9A0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G20730T G21255C C22227T A23403G C26801G G27651A C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549570
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9AD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T T8053Y G10870T C14408T C18032Y G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549573
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9137/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549574
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8B76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T C11074T G11083T T14100C C14408T A20268G C21614T A23403G C27942T C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549577
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B88D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T A1977G C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549578
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B88E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G767A A1163T C3037T G3560T C3961T C14408T C17547T A23403G C25413T G25660T G25742C G28122T TCA28252- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549579
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549580
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9F3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549581
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9C45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C8905T C10207T C14408T G21255C C22227T A23403G C25703T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549582
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B89E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C697T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549587
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8C19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C3157T G3328T G4006T C5170T C6286T C8713Y G11132T C14408T G18105C G21255C C22227T G22289K A23403G C26801G G27967T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549588
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9E21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C17934A A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549590
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8E7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2003T C3037T C3162T C4002T G6622C C9474T G10097A C13536T C13730T C14408T T20427A G22468A A23403G C23731T A24014G C24912T T25956C C27970T GGG28881AAC CGATCGAGTG29750- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549596
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9D06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1141T C2334T C3037T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549597
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B895E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549599
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B83AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T G18255T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549603
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B839C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549607
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B852D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C26028T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549608
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8DDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549609
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8DF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549611
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8FF2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549612
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B998A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T A8882G C12809T C14408T C18647T C19662T A23403G C25521T C27434T T28251C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549613
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B90B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G6865T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T G27659A GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549614
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T G9479T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549615
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9E6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549616
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8AF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549618
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8DCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T T4279Y C6286T G10996T C14408T G21255C C22227T G22346T A23403G C26801G G28321A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549619
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8C73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549620
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A8203G C9803T G11447A C14408T C16468T C18086T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549622
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B92CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549623
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8F98/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C17746T C18877T G21641T C22432T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29425T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549626
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B92DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G3328T G4006T C5170T C6286T G11132T C14408T G18105C G21255C C22227T A23403G C26801G G27967T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549628
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T A5877G G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28849Y GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549630
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9D7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G19690T G21255C C22227T A23403G C23940T T26609C C26801G C28932T G28980T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549631
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B888E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11514T C13168T C14408T C18877T C22444T A23403G G24764T G25563T C26735T C27059T G27806T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549632
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8AC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T G25266T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549635
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8E8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C3037T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549636
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9B0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G1820A C8782T G11230T A23403G C28000T T28144C G28167A G28878A G29742A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549640
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9AE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G C25169T A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549641
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8A1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G23311C A23403G C26801G C28932T T29185A G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549642
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B902B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T A29731G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549643
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9CFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C13019T C14408T G15406T C21637T A23403G ATT27579- A28169G G28326T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549644
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B92F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C313T C3037T G3250T C5700A C11020T C11109T C14408T G16377T A23403G C27874T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549645
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9AF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C15738T C17012T T18750C C21639T A23403G C23731T G26062T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549646
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8BEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C2455T C3037T C6286T C14408T G21255C C21614T C21660T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549647
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8E22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G7675K G11083T G14202T C14408T G19542T C19718T C21648T C22388T A23403G C26060T GGG28881AAC G29227T C29466T G29706T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549649
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B90EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C3157T G3328T G4006T C5170T C6286T G11132T C14408T G18105C G21255C C22227T A23403G C26801G G27967T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549651
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8B1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549653
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B903A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T C16887T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549654
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1126A C3037T C4084T C12809T C14408T G18105T T20367C G21538T A23403G T24995C C25714T GGG28881AAC C28915Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549656
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B89B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6124G G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G26262T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549658
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B83D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C3037T C3373A A6546G C6883T A11982T C14408T G14730A G21119A G21724A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549659
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9C81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C10207T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549660
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8A2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2536T C3037T C6286T G11083K C14408T G17749T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549661
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549663
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8E13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T C16887T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549667
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B84A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T C7081T G11132T C14408T G21255C C22227T A23403G G25987T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549668
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9F1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2847Y C2973T C3037T C6286T G9805T C14408T A20599C G21255C C22227T A23403G C26801G C27944T G28371T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549669
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8D43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C10376Y C12525T C14408T C14571T G19648T A20268G T21158C C22978T A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549670
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B99F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A3405G C6286T C12733T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549671
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9DBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C11747T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549672
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B997B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C11020Y C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549676
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8E31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2453T C2710T C3037T C12781T C14318T C14408T G19816T G22918T A23403G G24000T G25654T T27907G G28380T G28396A GGG28881AAC G29227A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549679
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8A97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C9561T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549681
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B89A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T G4510A C14408T G18985T G19480A C21844T T23084C A23403G C25318T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549684
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8AA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549687
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9CCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T927C T1947C C3037T C6286Y C7528T G9479T C14408T C18877T G22094R C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549691
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B99B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549692
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9E12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1376T G1464A C3037T C6402Y T7767C C8047T T12511C T12646C C13372T C14408T C15601T C17104T G17814T T19242C A20268G T22549C C22879A A23403G G25354T C25624T G28845T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549693
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8B49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549696
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9DF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G C28453Y GGG28881AAC T29035W CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549699
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B894F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T T21388C C22444T A23403G G25314T G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549700
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B90C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2305K C3037T C4543Y G5629K T7767Y C8047Y G9526K T10177Y C11497Y G12988K G13993K C14408T G15598R G15766K A16889R G17019K C17104Y G18028K C18877Y A20268R C22879M G22992R A23403G T24910Y T25220W G25494K G25563K C25609Y C25710T C26735Y T26876Y T26972Y C27800M G28975S G29399R G29427R G29706K G29734S G29779K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549701
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B851E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C17934A A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549704
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T G10072T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28300T G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549707
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B897C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C2523T C3037T G3994A C5730T C9924T G11083T C11109T C14408T C18877T TAT22189- C22444T A23403G C24138A G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549710
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9A3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549713
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8C37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549715
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8B67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549717
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8FE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549718
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9DE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549720
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B850F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3505T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549723
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8C28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T C16049T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549725
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8A5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549726
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9243/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC G29543T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549727
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B901C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549728
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9F6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA G22661T A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549729
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8FB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T C6568T C7162T C12116T C12809T C14408T G20718T A23403G G25135T C27532T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549730
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8C0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2421G C3037T C8683T C14408T G15406T C18657T C21618T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549732
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9E7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A25216R A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549735
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B838D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T T11522G C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549736
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9252/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1848Y C3037T T9115A G10886A C14408T G17278T C18032T G18105T G18662C C20178Y A23403G C23625T A25910G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549740
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9261/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T9115A G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549742
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B90A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G767A A1163T C3037T G3560T C3961T C14408T C17547T A23403G C25413T G25660T G25742C G28122T TCA28252- GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549745
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9999/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1471T C3037T A8882G C12809T C14408T C18647T C19662T A23403G C25521T C27434T T28251C GGG28881AAC G29063K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549748
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8AE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6900G C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549749
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B88BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549751
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C4320Y C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28344Y C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549752
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9D60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C1710T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549753
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B848A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G G25987T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549754
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8AD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C7299Y C14408T G21255C C22227T A23403G G25049T G25062T G25266K C25831Y C26801G C27208Y C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549756
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9E8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C19185T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T G29766K A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549759
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549760
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8F01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C11747T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549761
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B88CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T G373A C3037T C14408T C18348T G21624T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549763
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T C20823T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549764
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8F10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T A5877G G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549767
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T C29353T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549769
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B91DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C11074Y G11083T C11345T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T G29645T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549771
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9D15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549773
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8D52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C478T C1513T C3037T C6286T C14408T G21255C C21627T C22227T G22346T C22377T A23403G C25831T G26268T C26801G G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549774
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9A2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25563T A27241G A27932G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549776
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T T6652C C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549777
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6632T C13862T C14120T C14408T T16456C C20759T G22201T A23403G GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549781
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8E6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C3037T C5259T C5575T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549782
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A476G C3037T A3258G C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549783
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B92AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C3768T C6286T C14408T G21255C C22088T C22227T A23403G C26801G C28932T G29645T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549785
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B99E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549787
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8D9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G G28325T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549790
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B898B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C15738T C17012T T18750C C21639T A23403G C23731T G26062T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549792
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9F00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G6943T G14202T C14408T C16887Y G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549793
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8BC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549794
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9A1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4058Y C9430Y C14408T C18744Y A23403G G25563T C26822Y A27241G A27932G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549797
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9ED6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C11758T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549798
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9E03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C5365T C6286T C6807T C7926T C9745T G10427A C14408T C20404T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549799
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B938C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C556T C3037T G5150T C14408T A23403G C25339T G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549800
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G G25266K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549801
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9EC7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T G10996T C14408T G21255C C22227T G22346T A23403G C26801G G28321A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549805
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8E04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C3768T C6286T C14408T G21255C C22088T C22227T C22326T A23403G C26801G C28932T G29645T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559878
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B40F3/2020
 C222T C241T T445C C3037T C6286T C14408T A15779G C21855T A23403G A25505G G25906C G25996T C27002T C28651T C28869T

EPI_ISL_559879
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B414B/2020
 C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A AAAAAAAAAAAAAAAAAA29886-

EPI_ISL_559882
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B422A/2020
 C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A A29898M

EPI_ISL_559922
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/SHEF-C8848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C4002T C6286T C6807T C7926T T9205C C9745T C14408T G14718A G21255C C22227T A23403G C26681T C26801G G27790A C27944T G28368A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559930
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/England/SHEF-CC1B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560070
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B40B7/2020
 G204T C241T C1170T C3037T C4002T G4444T C6347T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G25567A C28849G GGG28881AAC

EPI_ISL_560071
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B40D5/2020
 G204T C241T C1170T C3037T C4002T G4444T C6347T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G25567A C28849G GGG28881AAC

EPI_ISL_560073
 2020-09-07 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B41C3/2020
 C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A

EPI_ISL_560416
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/AG-ETHZ-280072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1437T C1513T C3037T C6286T G11521T C14408T G21255C G22017K C22227T G22346K C22377T A23403G C26801G C28706T C28932T G29474T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560417
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/AG-ETHZ-280079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1437T C1513T C3037T C6286T G11521T C14408T G21255C C22227T G22346K C22377T A23403G C26801G C28706T C28932T G29474T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560418
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/AG-ETHZ-280083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T416Y T577Y T772C A2869G G2993R T3012W C3037T A5234W C5240Y A5257W G6352T C6445T A9873W C10036M T10076H C10868T C14408T G15652T A16210W A16339W A21456R C21587Y A22920W A22922R A22964W A23122M A23403G G23438T GGG28881AAC C29095T G29260T G29384T G29862K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560421
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/AG-ETHZ-280134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671T C14408T C14805T G17278T AT20284TC G21255C T21522Y A21634R G21830T C22227T A23403G C26801G A27755T C28932T G29645T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866M

EPI_ISL_560429
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T A5019M C5039M A5216W A5382W C5385Y A5436R T5551K G5629T T6130Y C7124Y T7147W T7256K A7259M T7305Y G9526T A9909W C11497T G13993T C14408T G15766T A16889G G17019T C18877T C21658M G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A A29827R G29843K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560430
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T G8179T C13297T G14055K C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560431
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2995T C3037T C4002T T4871C C6449T G10097R C10252T C13536T C14408T C19366T T21154K A23403G C23731T T27808C G28541T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560432
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280109/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A11782G C14408T G17242A A20268R T21570G C21575T A23403G C24138T T25473C C28253T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560433
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T5347C G11842A A12759G C14408T G14923R G18292T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560435
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G5018S C5208Y A5257W T7141W T7147W C7165Y A7181W A7193W A7196W T7228K C9864M A11782G C14408T G17242A C21516Y T21570G C21575T C21658Y C22347S C22388Y A22495R T22516W A23403G C24138T T25473C C28253T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560436
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C10138T C11497T G13993T C14408T G15766T A16889G G17019T C18877T T21482K C21549Y G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560455
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/BL-ETHZ-280081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C147T C241T C1409Y C2919Y C3037T C5534Y A6081M A6587W C7011Y C7124Y T7275Y G7294R G13503S C14408T C15026T A16210W G17616T T21477Y G21565R T21656Y T22777C G23049K A23403G C25904Y T27835Y T27929C C28311T AACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29694-

EPI_ISL_560456
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/BL-ETHZ-280082/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T432Y T445W A607R C1387T C2113T C3037T T3144K C3990T C7765T C10052Y G10054K T13375Y C14230A C14408T G16221K TA16310YW T16378K G16396R G16402S C17690Y C18877T C20468T T21553W G21593S A21625R AT21643RY C22326Y T23101Y A23403G C23887T G25563T C28311G A29643T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560457
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/BL-ETHZ-280084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346K C22377T A23403G G23909T G25595T C26801G C28512T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560476
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/GR-ETHZ-280071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T CC2061YT C3037T G3053T C4002T G5950K G10097R C12459Y C13536T C14408T G19732T C22997Y A23403G C23731T G25217T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560485
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T G9968R C14408T T20661C G21255C G21468T C21707Y C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560486
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G12202K G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560488
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C24937T C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560489
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C T634Y C3037T C6286T A7208R T7244Y C14408T G16369K T20661C G21255C A21460R T21465K GA21468TW C21638Y C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560490
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T416K T445C C815T A1977G C3037T C6286T T7274K T7280Y C14408T T20661C G21255C G21468T G21485S C22227T T22909W A22941W T23107W A23403G C26801G C28932T C29366Y C29386T G29645T GA29862RR TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560491
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2706T C3037T C5339T C5869Y C8266Y C9430T G11375A C14408T A19505G A20268G A23403G C25731T C28833T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560492
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C A2767G C3037T C5884Y C6286T C14408T C18681Y T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560493
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2706T C3037T C5339T C9430T G11375A C14408T A19505G A20268G A23403G C25731T C28833T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560495
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3096T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560496
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560503
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19086A G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560506
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13960R G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560507
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C66A C222T C241T T445C C3037T C6286T G12278A C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560508
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280145/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T A3305C C6286T C14408T T19218Y G21255C C22227T A23403G C26801G C27944T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560534
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/VS-ETHZ-280128/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C346T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560542
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-280073/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G4514A C5544T C8655Y C14408T G15438T T20286C C23086T A23403G C25207T G26152A GGG28881AAC C29733T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560543
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-280088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G571A C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G A25531G G25563T C25710T C26735T T26876C G28975C G29399A C29614Y C29724T G29757T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560545
 2020-09-07 2020-09-29
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-280135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C313T A552M A570R C965Y C3037T T7158Y T7263Y A9889R T10076W C14408T G14584R C14805T T15114C C15848Y A16278W C17430T G20940T G21463R A21559R C21588M T21633W C22993G A23122M A23403G G23580C G26951C GGG28881AAC G29715S TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_562604
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC10927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G11083T C14408T C16222T G16647T A17337G C18555T C22858T G22992A G23401A A23403G C24034T -25700CCC GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562700
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC10943/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5144T G7328T T7540C C14408T G16647T C18555T T21369C G22992A G23401A A23403G TTA26159- T28009C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562701
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC11208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G TTT27792- GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562719
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC11016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_562933
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC10496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T C16391T G16647T C18555T G22992A G23401A A23403G C25714T A26253C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_562952
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC10538/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5310T T7540C C14408T G15594T C16391T G16647T C18555T G22992A G23401A A23403G C25714T A26253C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563126
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC10849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T G714R A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23625T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563162
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC10947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T G2659T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563168
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC10958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3860T T7540C C8152T A13974G C14408T C15352T G16647T C18555T C21812T C22593T G22992A G23401A A23403G G24992C A26162G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563171
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC10963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C8290Y C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563175
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC10969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563183
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC10985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C12116T C14408T C14925Y G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563228
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC11061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C T11192C C12763T C14408T G16647T A17337G C18555T C19374T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563230
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC11068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTT1- C241T A1163T G2659T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563258
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC11122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C9474T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563297
 2020-09-07 2020-09-30
 Australia hCoV-19/Australia/VIC11207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T C6395Y T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C T27483Y GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_566490
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G C24904T G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566530
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C297F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A739G C3037T C4543T C4698A G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566531
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C24D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T C7081T G11132T C14408T G21255C C22227T A23403G G25987T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566547
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3505T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566579
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1F32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T4744C C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566582
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C24E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566591
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2432/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9416A G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566603
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C23DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A604G C3037T C3096T G11083T C12830A G13849T C14408T C15654T A19020T G21974T G22992A A23403G G24985K A26741G GTTCTA28090- C28291T GGG28881AAC C29311T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566657
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C25A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6632T C13862T C14120T C14408T T16456C C20759T G22201T A23403G GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566658
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C253F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7609T C11514T C11704T C13168T C14408T C18877T C21742T C22444T A23403G C24378T G24764T G25563T C26735T C27059T G27806T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566665
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1F23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566676
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C254E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C25521Y C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566680
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C410C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C8905T C10207T C14408T G21255C C22227T A23403G C25703T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566690
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C32EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C657T C3037T C4406T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566699
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C453D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATG518- G1210T C3037T G9802T G12067T C12357T C14408T G22344T A23403G G27390K GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566710
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C454C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566726
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4728/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566727
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3792/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C24023T C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566728
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C451F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A C29546Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566731
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C39F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566740
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC C29545T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566749
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3C39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566757
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1427T C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566773
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C452E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T C14571T G19648T A20268G T21158C C22978T A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566778
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C32DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566797
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3C1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T595C C3037T A8244G G8408A C9561T G12191T G12202T C14220T C14408T A16474G C19488T G19518T A23403G G25687T T26171A C28500T GGG28881AAC G29254A C29409T G29474T G29736T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566798
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C46EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566807
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C45B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C2508Y C3037T T4744C C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566827
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G24386T T25054C G25409K C25517T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566837
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C411B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C G1843A G2247K C3037T G4006T C5170T C6286T G11132T C14408T C16428T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566854
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C45D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C A2385G C3037T C6286T C9745T C14408T G21255C C22227T A23403G C23644T TG25878CA A25881T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566871
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C30C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C4331T T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T T25202K A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566875
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C33DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566892
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566894
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3A02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C6286T C14408T G21255C C22227T A23403G G24098T TT26485- C26801G G27877T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566901
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G23311C A23403G C26801G C28932T T29185A G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566906
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2FF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C583T C882T C2003T C3037T C6990T C8290T G9526T G13348T C14408T A16566T T18603C C18877T C21575T A23403G G25563T C25710T C26735T G28903A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566907
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C306A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566917
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3C2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566919
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C304C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T C7081T G11132T C14408T G21255C C22227T A23403G G25987T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566920
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3A11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C6286T C14408T G21255C C22227T A23403G G24098T TT26485- C26801G G27877T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566921
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4719/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T C3743T G8371T C9430T C13436T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25409C G25563T A26319G G28476C C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566935
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C30F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T383C C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566939
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5505C T7767C C8047T C12325T G12988T C14408T G15598A C17104T G18028T A20268G C21409T TACATG21765- G21800T C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566941
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C470A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2644T C3037T C3604T G6476T C8917T G9389A C14408T C18167T C19263T A23403G C25585T C26681T G28300C C28695Y G28857T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566942
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C320A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T C15356T G15598A C17104T G17427A G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566966
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C46D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G393T T445C T694C C1513T C3037T C6286T G11417T C14408T G21255C C22227T G22346T C22377T G22801T A23403G C25731T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566967
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C45C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C10626T C14408T G21255C C22227T G23311C A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566982
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C456A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T C3037T G5554T G11083T C13487T C14408T G20730A A23403G C24034T G28321T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566985
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3A20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C635T C1170T C3037T C4002T G4444T C4815T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G25567A C28849G GGG28881AAC C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566989
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2F40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2184G C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T G21830K A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566991
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4175/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A468G C3037T C14408T A20742C C21952T A23403G G24781T C28087T C28310T GGG28881AAC A29521T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568228
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8D61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G8179T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568230
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B896D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11173Y C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568233
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8F3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C5777Y C6286T C14408T G21255C C21614T C22227T A23403G C23929Y C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568236
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8D34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568239
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B9D8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C24099T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568240
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B845D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C11747T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568241
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8A4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G T24769C C25460T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568251
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B846C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568254
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B88AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T C15738T G21255C C22227T A23403G C26801G G27364T C27476Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568256
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B9C63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G8179T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568260
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8ED7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C337Y T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568264
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B9DCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568276
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B9C72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C24099T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568284
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B89C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C25487T C26801G C27944T G28077T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568285
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8B0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G8179T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568288
 2020-09-07 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B9D24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G8179T C14408T C19524T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536709 MW035507
 2020-09-08 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1338/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C1427T C3037T G3871T T3931C C8655T C14408T C19524T C20429T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536711 MW035509
 2020-09-08 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1340/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7173T G8083A A9085G C10319T C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536719 MW035516
 2020-09-08 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1348/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3190G C3695T C9994T C10319T C14408T A18424G C19868T A21037G C21304T C23320A A23403G G25563T G25907T C27964T C28472T C28657T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536722 MW035519
 2020-09-08 2020-09-16
 United States SARS-CoV-2/human/USA/NY-UW-1351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G903T C1059T C1473T C3037T G8083A A9085G C10319T C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536728 MW035525
 2020-09-08 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1357/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C475T C1059T C3037T C5986T G8083A C14408T C14805T A18424G A23403G G25563T G25907T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536729
 2020-09-08 2020-09-16
 United States hCoV-19/USA/WI-UW-1358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C745T C1059T C1385T G1738T C3037T G3242A C5628T C11916T T12169C C14408T C17734T A23403G G25563T C27960T C28087T G28681A C28887T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536730 MW035526
 2020-09-08 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1359/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G7743T A8054G G11335A C11956T C12025T C14408T A21464G A23403G C23707T C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536734 MW035530
 2020-09-08 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1363/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T221C C241T C3037T T12139C C14408T T17589C C17745T C18568T A20268G A23403G C23707T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536735 MW035531
 2020-09-08 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1364/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T A696C C3037T G3871T T3931C C6906T A8390G C14408T C19402T A23403G G24124T G24926T C25153T G25305T C28698T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536739 MW035534
 2020-09-08 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1368/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2035T G2305T C3037T T8803C C14408T C16954T T19839C G21255T A23403G G25563T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536740 MW035535
 2020-09-08 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T C18029T A18424G C21302T CG21304AA A23403G C23718T G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536743 MW035538
 2020-09-08 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1372/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C2113T T2537C C3037T G12070A C14408T C21639T A23403G C25521T C26735T GGG28881AAC A29319T G29513T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536749
 2020-09-08 2020-09-16
 United States hCoV-19/USA/WI-UW-1378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C745T C1059T C1385T G1738T C3037T G3242A C5628T C11916T T12169C C14408T C17734T A23403G G25563T C27960T C28087T G28681A C28887T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537286
 2020-09-08 2020-09-16
 Australia hCoV-19/Australia/NSW-SAViD-2751/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8950T C10594T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24764T C26801T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_540902
 2020-09-08 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A531/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- CG203TT C241T T445C C3037T G4181A C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29870M

EPI_ISL_540910
 2020-09-08 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A5B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T T16976Y C19366Y G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_540911
 2020-09-08 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A5C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T C18322Y G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_540913
 2020-09-08 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A5E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T C401T T445C C3037T C6286T G11083T C14408T C15480T G21255C C21614T C22227T A23403G C26135T C26801G C27944T C28932T G29645T

EPI_ISL_540914
 2020-09-08 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A5F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T445C C3037T C5170T C6286T C10078T G11132T G11417T C14408T G21255C G22051T C22227T A23403G C26801G C28932T G29179T G29645T

EPI_ISL_540915
 2020-09-08 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A601/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_540917
 2020-09-08 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A62F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T

EPI_ISL_540918
 2020-09-08 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A63E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_547793
 2020-09-08 2020-09-24
 United States hCoV-19/USA/WI-GMF-19195/2020
 ATTAAAGGTTTATACCTTCCCA1- C203T C241T C1059T G1439T C2607T C3037T C14408T A14634G C18555T G19735T C22432T A23403G G25563T C28892T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547795
 2020-09-08 2020-09-24
 United States hCoV-19/USA/WI-GMF-19225/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T A23403G G23900C A24253T G25563T G28681T C28821A G29808T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547796
 2020-09-08 2020-09-24
 United States hCoV-19/USA/WI-GMF-19226/2020
 ATTAAAGGTTTA1- C241T A831G T1562C G2035T C3037T A3262G T3745C C11674T C11956T C12025T C14408T T19839C A23403G C23707T C28708T C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547797
 2020-09-08 2020-09-24
 United States hCoV-19/USA/IA-GMF-19239/2020
 ATTAAA1- C241T C1059T C3037T C4719T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547798
 2020-09-08 2020-09-24
 United States hCoV-19/USA/WI-GMF-19240/2020
 ATTAAAGGTTTATACCT1- C241T A696C C3037T G3871T T3931C C4226T A5405G C5672T A7837C T8082C A9981G G12202T C14408T C21431T G21974T A23403G G24199T C28977T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547803
 2020-09-08 2020-09-24
 United States hCoV-19/USA/WI-GMF-19271/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C4719T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28869T G29402T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547807
 2020-09-08 2020-09-24
 United States hCoV-19/USA/WI-GMF-19309/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T G1738T C3037T C14408T C16575T A19736G T19839C T20252G A23403G A23756G G28378T GGG28881AAC G29751T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549222 MW040650
 2020-09-08 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1440/2020
 ATT1- C241T C3037T C14408T A23403G G26428T G26589T C28153T GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549223 MW040651
 2020-09-08 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1441/2020
 ATTA1- C241T C3037T C14408T A23403G G26428T G26589T C28153T C28253T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_549225 MW040653
 2020-09-08 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1191T C3037T C9521A C12403T C14408T C14925T C17676T A20268G A23403G A23985G C24904T C28854T G29422T A29567G GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_549226 MW040654
 2020-09-08 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1444/2020
 ATTAAAGGTTTATACCTTCC1- C241T C1059T C3037T C3369T C5583T G8017T C14408T C16260T A23403G G25563T G28134A C28290T C28821A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_549227 MW040655
 2020-09-08 2020-09-25
 United States SARS-CoV-2/human/USA/FL-BPHL-1445/2020
 A1- C241T C1059T C3037T C3602T G13771A C14408T C15960T C16762T C21008T C21595T A23403G G25563T C25672T A25934G G26842A TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_549351
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/NORW-EF67E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T4303C T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549394
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/CAMB-1B5E1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C13009T C14408T G18462T G21255C C22227T G22346T A23403G C26801G G28321A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549488
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/NORW-EFC8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G19009T C20823T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549568
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C241T G256T C1218T C3037T C5175T C5339T G8548T A9900C C9979T C12733A C14408T G18255T C19402T C21812T A23403G G25793T G26416T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549585
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8CBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G G28703C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549598
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8772/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G393T T445C C1513T C3037T C6286T G11417T C14408T G17331T G21255C C22227T G22346T C22377T A23403G C26622T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549602
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B862A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549604
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8CFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7764T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549621
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8CDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10954T G11230T G11401T C14408T G22992T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549627
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B887F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C1473T C3037T T3228G C4893T G9802T G12067T C14408T A23403G GGG28881AAC A29521T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549675
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2969G C3037T C9714T C13430T C14408T A23403G C24621T G28079T C28887T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549688
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G208T C241T T2845C C3037T C4206T C6500T C14408T A16956G A17727G A20268G A23403G C28854T C29708T G29737T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549750
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C241T G256T C3037T C5175T C5339T G8548T A9900C C9979T C12733A C14408T G18255T C19402T C21812T A23403G G25793T G26416T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549779
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8CEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549788
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/QEUH-9B8639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T T1813A C3037T C4158T C8318A C10615T T13954C C14408T G18520T G18859T C19017T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549796
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8CA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C16260T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549802
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8FC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G16245R G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549803
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8CCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G14638T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T G29402T C29466T C29614T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559935
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/England/SHEF-CE44E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560056
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B3A50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560057
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B3B5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560058
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B3B6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560060
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B3C69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560061
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B3C78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560065
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B3F24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T C14408T A20268G C21575T A23403G C25731T C28833T C29247T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560066
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B3F42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560067
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B3F51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560068
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B3F60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560074
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B44F7/2020
 C241T C3037T T7767C C8047T G11557T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C G25606T C26313T T26972C C27800A G29734C

EPI_ISL_560075
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B4503/2020
 C241T C2706T C3037T C4084T C14408T A20268G A23403G C25731T C28833T C29247T

EPI_ISL_560076
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B4512/2020
 C241T C2706T C3037T C4084T C14408T A20268G A23403G C25731T C28833T C29247T AAAAAAA29897-

EPI_ISL_560077
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B4521/2020
 C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G AA29902-

EPI_ISL_560078
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B4530/2020
 T13C C222T C241T T445C C1684T C3037T T5035C C6286T C14408T C16323T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T A29877K AA29883RW A29888R AAAAAAAAAAAAA29891-

EPI_ISL_560079
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Scotland/QEUH-9B454F/2020
 G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560129
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28253Y C28932T G29645T

EPI_ISL_560150
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AABA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_560154
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AAF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C G1148K C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_560155
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AB02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_560163
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AB8A/2020
 AT1- T11Y G204T C241T C401Y T445C C3037T C6286T G11083K C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_560176
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AC5A/2020
 ATTAAAGGTTTATACCT1- G204T C241T T445C C3037T G4207T C6286T C11396T C14408T C14786T G21255C C21614T C21622M C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_560185
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ACE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G A27472G C27944T C28932T G29645T

EPI_ISL_560190
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AD39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560195
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AD84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29743T A29903-

EPI_ISL_560197
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ADA2/2020
 AT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800M G28817T G29734C

EPI_ISL_560199
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ADC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G A27472G C27944T C28932T G29645T

EPI_ISL_560201
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ADEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AAA29901-

EPI_ISL_560202
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ADFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C3876T C6286T C14408T C15480T G21255C C21614T TT21991YW C22227T A23403G C26801G C27944T C28932T G29645T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_560205
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AE27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_560206
 2020-09-08 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AE36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29743T A29903-

EPI_ISL_560420
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/AG-ETHZ-280113/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T2987W C3037T A3779M C5055Y C5142M G5210S T7205Y C9943S C9985Y G10265A T13569K C14408T C15720T A15972G C19718T C21459Y A21611R A21619R C22444Y T22499W CG22987TR C23191T A23403G G25173R T26516K G26700T G27289K G28373T T28759Y A28802W GGG28881AAC T28952K G29778K G29830K A29850W TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560422
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/AG-ETHZ-280149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097R C13536T C14408T C15738T C22326T A23403G C23731T G24781K C27513T GGG28881AAC C29364Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560424
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/AG-ETHZ-280156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1437T C1513T C3037T C6286T G11521T C14408T G21255C C22227T G22346K C22377T A23403G C26801G C28706T C28932T G29474T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560434
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C10560T G11842A C12723Y A12759G C14408T G18292T A20268G A23403G A27372W C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560437
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280139/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A424R A427R A430R AAA437RRR AA479RR A532R A535R A538R A544R A548R A552R A555R A563R A594R AA604RR A607R A618R A624R A639R A642R A732G C3037T G3047K C4543T G5044R C5051Y G5233R C5291Y C5295Y G5629T A7121R A7123R A7150R A7193R A7219R A7281R A7285R G9526T A9980R C11497T G13993T C14408T G15766T A16328W C16367Y A16889G G17019T C18877T A22460R G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A C29739Y C29750Y C29801Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560440
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560458
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/BL-ETHZ-280122/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T426K C2983Y C3037T A3090W T3100W A3779M G5187K G5196K G5253K A5353R T7263Y T9867Y T10011W G10265R C14408T C15720T A15972G C16393Y C19718T AT20284WY T20459Y T21615Y G22430R C22458M T22515K A22904W C22987Y T23052W A23063R T23104Y C23191Y A23403G G26700T G27289K G28373T T28759Y GGG28881AAC C28932Y A28973R G28985R TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560463
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/BL-ETHZ-280184/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C T467Y T554Y C1437T C1513T C3037T C6286T G11521T C14408T G21255C C21575Y C22227T T22355Y C22377T C22982Y T23100Y C23103Y A23403G C26801G C28706T C28932T G29474T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560471
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/BS-ETHZ-280117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C703T C3037T C8123T C14408T C19586T T22020Y A23403G T24152Y C27131T GGG28881AAC G29024T C29614Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560481
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/SZ-ETHZ-280121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671Y C14408T C14805T G17278T AT20284TC G21255C C22227T A23403G C26801G G27238R A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560497
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C66A T76Y C222T C241T C421M G441K T445C T469W G602R C2940M A2977M C3037T T3043Y A3105R G5018R T5160Y T5338K C5526Y A5563R C6286T C6807Y G8375R G9890B G9968R C10525Y C10782Y C10977M G12278A C14408T C19156Y AT20284WY C20462Y T20661C G21255C G21468K T21632W T21644W A21651R C22227T T22355Y A22374W T22389K T22392W C23111Y A23403G G25249K C26801G G28790S G28809K T28813K C28844Y C28932T T28963W C29366Y C29386T G29645T G29706S T29834W G29864K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560498
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G4960K C4965Y G5629K C7564Y G9526T C10279Y C10301M C10525Y C10582Y C11497T G11851K G13993K C14230M C14408T G15766K A16889R G17019K C18877Y G19056K C19593Y G21800K G22992A A23403G G25563T C25710T G26268K C26735T T26876C C27434Y G27632K C28744Y G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560500
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T A11782G C14408T G17242A T21570K C21575Y A23403G C24138T T25473C C28253Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560501
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C5055T G11851T A12755G C14408T A23403G G24812T C26895Y GGG28881AAC C28887T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560502
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C5055T G11851T A12755G C14408T A23403G G24812T C26895Y GGG28881AAC C28887T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560504
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560509
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280146/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C21727Y G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29383T G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560510
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280147/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G2155T C2675Y A2760W C3037T C4543T G5629K A7150M T7156W G9526T C11497T G13993T C14408T C14585Y G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A T29807Y A29824R T29845Y ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866M

EPI_ISL_560514
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560515
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C19868Y G21508R G22992A T23050K T23075Y A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560516
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A405R G669R C3037T C4543T G5629K G9526T G9882R C11497T C13551Y G13993T C14408T G15766T A16889G G17019T C18877T A21474W G22992A G23015K A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560517
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C10582T G11083T C14408T A20268G A23403G C25731T T27384C G28703C C28833T C29409T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560518
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C A459R C461Y C464S G526R C3037T C6286T T10076W C14408T T20661C G21255C G21468T C22227T TA22990YW T23062W A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560519
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2470T C2706T C3037T C4084T C14408T G18907K A20268G A23403G C25731T C28833T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560544
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-280119/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T T5347C G11842A A12759G C14408T G14923R G18292T A20268G A23403G C28854T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560546
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-280169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T A23403G G23438T GGG28881AAC C29095T G29260T G29384T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560547
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-280171/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671Y C14408T C14805T C16049T G17278T AT20284TC G21255C C21575T C22227T A23403G T26436C C26801G A27755T C28932T G29422K G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560548
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-280172/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C245T C274T C313T C337Y C464Y G587S C3037T C5907A C6525T C14408T G17679K G19525T A23403G A23995G GGG28881AAC G29755T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560549
 2020-09-08 2020-09-29
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-280174/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3373A C9733T C14408T T20273C C20759T A23403G GGG28881AAC G29557T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_562609
 2020-09-08 2020-09-30
 Australia hCoV-19/Australia/VIC11062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G6485A T7540C C9603T C14408T C16222T G16647T A17337G C18555T C22858T G22992A G23401A A23403G C24034T -25700CCC GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_562717
 2020-09-08 2020-09-30
 Australia hCoV-19/Australia/VIC10988/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_562720
 2020-09-08 2020-09-30
 Australia hCoV-19/Australia/VIC11092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T C19610T G22992A G23401A A23403G GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562736
 2020-09-08 2020-09-30
 Australia hCoV-19/Australia/VIC11078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T C16049T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GC29773- TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_563124
 2020-09-08 2020-09-30
 Australia hCoV-19/Australia/VIC10847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T9013C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563154
 2020-09-08 2020-09-30
 Australia hCoV-19/Australia/VIC10923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563177
 2020-09-08 2020-09-30
 Australia hCoV-19/Australia/VIC10973/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563180
 2020-09-08 2020-09-30
 Australia hCoV-19/Australia/VIC10981/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G A26759T T27919C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563198
 2020-09-08 2020-09-30
 Australia hCoV-19/Australia/VIC11013/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G C24198Y A26759T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563200
 2020-09-08 2020-09-30
 Australia hCoV-19/Australia/VIC11017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563212
 2020-09-08 2020-09-30
 Australia hCoV-19/Australia/VIC11033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563214
 2020-09-08 2020-09-30
 Australia hCoV-19/Australia/VIC11040/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_563224
 2020-09-08 2020-09-30
 Australia hCoV-19/Australia/VIC11052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G C25867T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563233
 2020-09-08 2020-09-30
 Australia hCoV-19/Australia/VIC11074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563790
 2020-09-08 2020-09-30
 Australia hCoV-19/Australia/VIC13631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3738T C4832T T7540C C9491T C14408T G16647T C18555T C19170T G21800T C21952T G22992A G23401A A23403G C26571T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_566451
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1E71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4291T C8683T C14408T G15406T C16260T C19862T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566460
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C24BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C3743T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566469
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C203E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T T1813A C3037T C4158T C8318A C10615T T13954C C14408T G18520K G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566485
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C28DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566494
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C27C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566510
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C C21952T A23403G G24781T C28087T C28310T GGG28881AAC A29521T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566515
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2CB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566548
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C220B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1346Y C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566612
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C21FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T C16580Y T21570G C21575T A23403G T25473C A26295T T28251G CA28253TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566622
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C202F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A T10177Y C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566643
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2DFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566675
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C26E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566682
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C438E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C A22206T C22227T A23403G G25049T G25062T C26801G C28657T C28932T G28960T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566700
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3BF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4467T G13004T C14408T C18486T A20268G C22000T T22162C A23403G C27434T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566742
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C30A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567248
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C140Y C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568022
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C17738T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568051
 2020-09-08 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C17738T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_569208
 2020-09-08 2020-10-02
 France hCoV-19/France/IHU-1575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T T4387C C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C21575T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569214
 2020-09-08 2020-10-02
 France hCoV-19/France/IHU-1585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C5055T G11851T A12755G C14408T A23403G G24812T C26895T GGG28881AAC C28887T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569219
 2020-09-08 2020-10-02
 France hCoV-19/France/IHU-1590/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4002T G10097A C10252T G10324T C13536T C14408T T21154G C22083A A23403G C23731T GGG28881AAC TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_536714 MW035511
 2020-09-09 2020-09-16
 United States SARS-CoV-2/human/USA/NY-UW-1343/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T A23403G G23900C A24253T G25563T C26967A C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536715 MW035512
 2020-09-09 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3190G C3695T C9994T C10319T C14408T A18424G C19868T A21037G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536717 MW035514
 2020-09-09 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1346/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536718 MW035515
 2020-09-09 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1347/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A G8179T C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T A28095C G28329T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536720 MW035517
 2020-09-09 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7173T G8083A A9085G C10319T C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536723 MW035520
 2020-09-09 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536725 MW035522
 2020-09-09 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1354/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C5869T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25444T G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536727 MW035524
 2020-09-09 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4226T A7837C G8083A C14408T C14805T A18424G A23403G G25907T C27276T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536731 MW035527
 2020-09-09 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T A696C C3037T G3871T T3931C C6906T A8390G C14408T A17473G C19402T A23403G G24926T C25153T C28977T T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_536775 MW035567
 2020-09-09 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C1427T C3037T G3871T T3931C C6285T C8655T C14408T C19524T T19791C C20429T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_537287
 2020-09-09 2020-09-16
 Australia hCoV-19/Australia/NSW-SAViD-2752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8950T C10594T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24764T C26801T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_540722
 2020-09-09 2020-09-21
 United Kingdom hCoV-19/England/SHEF-C24FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T G21800T A23403G G25687A GGG28881AAC A29357G T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540729
 2020-09-09 2020-09-21
 United Kingdom hCoV-19/England/SHEF-C509E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540732
 2020-09-09 2020-09-21
 United Kingdom hCoV-19/England/SHEF-C5896/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T G21800T A23403G G25687A GGG28881AAC A29357G T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540746
 2020-09-09 2020-09-21
 United Kingdom hCoV-19/England/SHEF-C9D2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540752
 2020-09-09 2020-09-21
 United Kingdom hCoV-19/England/SHEF-CAE62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540756
 2020-09-09 2020-09-21
 United Kingdom hCoV-19/England/SHEF-CDDAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T G21800T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540767
 2020-09-09 2020-09-21
 United Kingdom hCoV-19/England/SHEF-D0C6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540768
 2020-09-09 2020-09-21
 United Kingdom hCoV-19/England/SHEF-D1141/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T G21800T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540885
 2020-09-09 2020-09-21
 United Kingdom hCoV-19/Scotland/EDB7746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T C15216T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540900
 2020-09-09 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T G11083T T12771C C14408T C15480T G21255C C21614T C22227T C22329Y A23403G C26801G C27944T C28932T A29122G G29645T

EPI_ISL_540907
 2020-09-09 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A58C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C G2036A C3037T C3874T C6286T C14408T G14547A C15480T T18567C A18752G G19300A G21255C C21614T G21761A T21967C G22225A C22227T A23403G C26801G C27944T C28265T C28932T G29645T

EPI_ISL_540909
 2020-09-09 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A5AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C2523Y C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_540916
 2020-09-09 2020-09-21
 United Kingdom hCoV-19/Wales/PHWC-16A610/2020
 ATTAAAGGTTTATACCT1- G204T C241T T445C C3037T C6286T G11083T T12771C C14408T C15480T G21255C C21614T C22227T C22329Y A23403G C26801G C27944T C28932T A29122G G29645T

EPI_ISL_547808
 2020-09-09 2020-09-24
 United States hCoV-19/USA/WI-GMF-19443/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C475T C1059T C3037T C5986T C12754T C14408T A23403G G25563T A28389T C29837T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547809
 2020-09-09 2020-09-24
 United States hCoV-19/USA/WI-GMF-19457/2020
 ATTAAAGGTT1- C241T C1059T CC1347TT C3037T C10319T C11919T A12737G C14408T A18424G G18903A C21304T A23403G G25563T G25907T C27964T C28869T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547810
 2020-09-09 2020-09-24
 United States hCoV-19/USA/WI-GMF-19466/2020
 ATTAAAGGTTTATACCT1- C203T C241T C1059T G1439T C2607T C3037T C14408T A14634G C18555T C22432T A23403G G25563T C28892T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547811
 2020-09-09 2020-09-24
 United States hCoV-19/USA/WI-GMF-19468/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G A20753G C21304T A23403G G25563T G25907T C27964T C28869T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547812
 2020-09-09 2020-09-24
 United States hCoV-19/USA/WI-GMF-19488/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T G3418T C4719T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25654A G25907T C27964T C28869T G29402T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547814
 2020-09-09 2020-09-24
 United States hCoV-19/USA/WI-GMF-19492/2020
 ATTAAAGGTTTATACCT1- C241T A831G T1562C G2035T C3037T A3262G T3745C C11674T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547817
 2020-09-09 2020-09-24
 United States hCoV-19/USA/WI-GMF-19502/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T A10323G A10828G T11343C C11572T C14408T T15276A A23403G G25563T G28812T G28817T G28842T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549350
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/NORW-EF5DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C20987T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549518
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/NOTT-113616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T G29254A C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549583
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8F4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4291T C8683T C14408T G15406T C16260T C19862T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549589
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T G4255R C6286T C6927T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549605
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8D16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549606
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9B2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T C5365T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T G25839T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549625
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9B48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C G3286A C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549639
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6927T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549662
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8F7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549665
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9AC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549673
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9B39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T C19862T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549674
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9BC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549682
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9B57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549694
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8C91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T T1901C C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C26447T GGG28881AAC G28903T G29017A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549703
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8F6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C C21952T A23403G G24781T C27145T C28087T C28310T GGG28881AAC A29521T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549734
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9D33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C G3286A C5622T -11075TTT G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549739
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8F5C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T A12075G C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549747
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9B66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549762
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549768
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B9D51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C3157T G3328T G4006T C5170T C6286T G11132T C14408T G18105C G21255C C22227T A23403G C25553Y C26801G G27967T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559947
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G T24769C C25460T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559948
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4275/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T5035C C6286T C8606T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559949
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4276/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C679T C3037T C6286T C7093T A7455G C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559950
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G8179T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559952
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29730T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559954
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559955
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T C14408T A20268G A23403G C25731T C28833T C29247T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559956
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9561T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559958
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T G22216T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559960
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559962
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C3425T G9802T G12067T C14408T A23403G GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559964
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559966
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559967
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G8179T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559969
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4298/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559970
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Scotland/CVR4299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G14209T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560084
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A67A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_560088
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A6B6/2020
 ATTA1- G204T C241T T445C C3037T C6286T C7926T C9592Y C9745T C11031Y C14408T G21255C C22227T C22264Y A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560094
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A71D/2020
 ATTA1- C241T C3037T C10156T C14408T A20742C A23403G GGG28881AAC G29422T

EPI_ISL_560103
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A7A4/2020
 ATTA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G A27472G C27944T C28932T G29645T

EPI_ISL_560137
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A9EA/2020
 ATTAAAGGTTTA1- G204T C241T T445C C3037T G3564K C6286T G9249K C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T C29870M

EPI_ISL_560143
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AA41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C5869T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T

EPI_ISL_560159
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AB4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T

EPI_ISL_560207
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AE45/2020
 ATTAAAGGTTT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T C29347T G29645T AAAA29900-

EPI_ISL_560219
 2020-09-09 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AF06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T G11083T T11577C C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_560425
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/AG-ETHZ-280178/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2470T C2706T C3037T C4084T C14408T G18907K A20268G A23403G C25731T C28833T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560427
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/AG-ETHZ-280191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2470T C2706T C3037T C4084T C14408T G18907K A20268G C22943Y T23045Y A23403G C25731T C28708Y C28833T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560441
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T G434R T445C T451Y C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560442
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280185/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560443
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280186/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T G13459K C14408T G20398A T20661C G21255C G21468T C22227T A23403G G25816C C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560444
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280193/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C A1317M C3037T C6286T C14408T G17193T T20661C G21255C G21468T C22227T A23403G G25217T G25598S C26801G G27877T C28932T A29201R C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560445
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280195/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G598K C3037T G4514A A5257W C5544T C6927Y C8655Y C10202Y G10265R T10606Y C14408T G15438T A16210W C16220M T16358Y T20286C C22502Y C23054S C23086T A23122M A23403G C25207T G26152A A26341W A28780W GGG28881AAC G28985R CG29733YS TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560459
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/BL-ETHZ-280150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C9943T G11083T C14408T G15708T C18086T C18555T G21220T A23403G T26008C C27532Y GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560460
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/BL-ETHZ-280151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C3784Y G4255T C14408T C17127A C20436T A23403G C23575Y G24926T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560461
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/BL-ETHZ-280152/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1820A C3037T G6337T C9430T C10582T C12823T C14408T C15951T G16744A A23403G G25690T G28774R GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560462
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/BL-ETHZ-280180/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C245T C313T A430R G472R T474W C1473T C3037T T7138Y T7305K C9532T C9864Y C11747T C14408T C16386Y C17634T A20471R G21485S G21544R A21562R A21626R T23084W A23403G T27901C GGG28881AAC T28906A C29272T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560468
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/BL-ETHZ-280221/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G602R C1572Y C3037T C4543T T5439Y G5629T G9526T C9863Y T10076W G11083T C11497T G13993T C14408T G15766T T16361Y G16416R A16889G G17019T T18327Y C18877Y G21463R C21478Y A21643R A22975W G22992R A23060R A23403G G25563T C25710T C26735T T26876C G28068T G28975C G29399A G29427A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560483
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/TI-ETHZ-280192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C14408T G20398A T20661C G21255C G21468T C22227T A23403G G25816C C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560484
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/TI-ETHZ-280194/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C7086T C8106T C12488Y C14408T G18020A G21255C C22127T C22227T A22351M A23403G G23477A C26801G C28932T C29366Y G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560511
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G602S C3037T C5055T C9979Y G11851T A12755G C14408T A16210W T16378K T21482K C21530Y A23403G G24812T C26895Y GGG28881AAC C28887T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866R

EPI_ISL_560512
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K T7861W G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G27506K G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560513
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G G26834T C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560520
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2706T C3037T C5339T C9430T G11375A C14408T A19505G A20268G A23403G C25731T C28833T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560521
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C14408T G18255K T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560522
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280203/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2706T C3037T C5339T C9430T G11375A C14408T A19505G A20268G A23403G G25471K C25731T G27709R C28833T C29218Y TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560524
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C6286T C14408T C16391Y T20661C G21255C G21468T C22227T G22927K A23403G C24937T C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560525
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A460W C1284T C2644Y C3037T C4543T A5355M G5629K C6213T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22349K AG22351MK A22356M A22359M G22361K GGG22363KKK AAA22394MMM A22398M G22992A G23006R A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560527
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280222/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T283C T445C C673Y C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26801G C27092Y C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560535
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/VS-ETHZ-280204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T C5348M T5551W G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T T21576W C21658M A22374R C22425Y G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560550
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-280196/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C147T C241T C3037T C4543T G5629K G7756R G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560551
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-280197/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1437T C1513T C3037T C6286T G11521T C14408T G21255C C22227T G22346K C22377T T23101W A23403G C26801G C28706T C28932T G29474T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560552
 2020-09-09 2020-09-29
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-280198/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T G9130T G9389A C9700T A9926T C10851T A13711G G14118A C14408T G19006T A23403G T27319C G28487A C28868T GGG28881AAC G29072A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_562695
 2020-09-09 2020-09-30
 Australia hCoV-19/Australia/VIC11118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C4455T T7540C T8866C C14408T G16647T C18555T G22992A G23401A A23403G C25006Y ATT27379- C27532M ATT27759- G28628T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562721
 2020-09-09 2020-09-30
 Australia hCoV-19/Australia/VIC11170/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C1302T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563497
 2020-09-09 2020-09-30
 Australia hCoV-19/Australia/VIC11850/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C T11192C C12763T C14408T C16247T G16647T A17337G C18555T G22992A G23401A A23403G C26208Y GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563498
 2020-09-09 2020-09-30
 Australia hCoV-19/Australia/VIC11927/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T9013C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563510
 2020-09-09 2020-09-30
 Australia hCoV-19/Australia/VIC12034/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C920T A1163T C3037T T7540C G9918A C14408T C15371T G16647T A17337G C18452T C18555T G22992A G23401A A23403G GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_563550
 2020-09-09 2020-09-30
 Australia hCoV-19/Australia/VIC12248/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563555
 2020-09-09 2020-09-30
 Australia hCoV-19/Australia/VIC12361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563567
 2020-09-09 2020-09-30
 Australia hCoV-19/Australia/VIC12484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563569
 2020-09-09 2020-09-30
 Australia hCoV-19/Australia/VIC12526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563578
 2020-09-09 2020-09-30
 Australia hCoV-19/Australia/VIC12694/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563579
 2020-09-09 2020-09-30
 Australia hCoV-19/Australia/VIC12696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T C21207T C22792T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563588
 2020-09-09 2020-09-30
 Australia hCoV-19/Australia/VIC12750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29347T G29692T G29777T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563881
 2020-09-09 2020-09-30
 Australia hCoV-19/Australia/VIC13918/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6395T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563883
 2020-09-09 2020-09-30
 Australia hCoV-19/Australia/VIC13923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T T694W C920T A1163T C3037T C5622Y T7540C C9474T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566447
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C2362/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10449T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566454
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C239F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566465
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2353/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T G21608A C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566559
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C23AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T G252T T445C A2031G C3037T C6286T C8123T C14408T C15480T C20703T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29543T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566560
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C2423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G6553A C7926T C9745T C13329T C14408T C15277T G21255C C22227T A23403G G26506T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566585
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C2405/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566605
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C257B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10449T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566608
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C256C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10449T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566609
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2380/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T C18267Y G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566626
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C255D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566628
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2317/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G25567A C28849G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566645
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C2335/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C G21800T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566673
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2371/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566681
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3A5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T C7081T G11132T C14408T G21255C C22227T A23403G G25987T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566683
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C3AB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566685
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3D18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G T25414C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566687
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3CFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T C11074T G11083T T14100C C14408T A20268G C21614T A23403G C27942T C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566688
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3F7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T C18555T C19718Y C20555Y G21255C C22227T A23403G C26228T T26609C C26801G A27609C C28932T G29645T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566692
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C44B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566693
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3C66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G C25731T G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566697
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2407T C3037T C3602T G4442T C6525T C6941T G11761T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566698
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C3DAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566701
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3EF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27503T C27944T C28932T G29645T C29732T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566705
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3D27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566708
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3F9A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C17934A A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566711
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C43CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A739G C3037T C4543T C4698A G5629T G9526T C11497T G13993T C14408T C15237S G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C C27573Y G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566713
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C42FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C10681Y C11379Y C14408T C18877T C22444T A23403G G25563T C26735T C28399T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566721
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C401E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566725
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C462B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C274T C1121T A2895G C3037T C6395T C11020T A12410G C14408T C17125T C17550T A18366G C18788T T19839C T21093C A23403G T25533A C25703T G27561T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566730
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C3C57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566732
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C455B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C11824T C14408T C18877T C20956T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566734
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C31D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T C7081T G11132T C14408T G21255C C22227T T22702C A23403G G25987T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566735
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3B96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C241T C3037T A4872G C6638T A12466G C13965T C14408T T19839C C21219T A23403G G25775T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566741
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3E60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T C19884T T20661C G21255C G21468T C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566744
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3B5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T C19264T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566748
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C461C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566751
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C45E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A G16206T C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25489T G25494T T26972C C27800A G28857T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566752
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C449A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T G22205C C22227T A23403G C26801G C27881A C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566759
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3F30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2091T C3037T C3117T A9419G C14408T T19839C A23403G G27798T G28851T GGGG28881AACT G29024T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566763
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3E42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C17934A A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566764
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C42BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4300T G5572A A6366T T9440G G11410A C14408T C15763T G16489A C18928T C19488T C20703T C21727T C22033A A23403G G25776T C26110T C27509T C28770T G28851T GGG28881AAC G29747T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566765
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3E8E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C C11460T G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566771
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C3F12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C G21334T C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566772
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3A99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G11083T C14408T C15480T G21255C C21614T C22227T C22329T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566774
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3BA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T C29732T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566775
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4351/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T G10870T C14408T C15324T A23403G C25549T C28887T G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566776
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3F4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2091T C3037T C3117T A9419G C14408T T19839C G21987T A23403G G27798T G28851T GGGG28881AACT G29024T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566777
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C43D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1718T C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566780
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3EAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G18412T G19542T C19718T C22388T A23403G C26060T G26389T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566781
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4579/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C5986T A6528G T7292C T8410C G9092A C10833T C11572T C13458Y C14408T C16293T C17104Y C18877T C22444T T23296Y A23403G T23986C G25563T C26735T C26996Y C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566782
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3D90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566784
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3B69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C9541T G11083K C14408T A18798C G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566793
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3F21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T G11048T C14408T G21255C C22227T G22346T C22377T C23099S A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566794
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3D45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2407T C3037T C3602T G4442T C4777Y C6525T C6941T C11494T G11761T C14408T C15324T A16044T C20468T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566796
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4658/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1348T T1851C C3037T G9010R G10265A G11083T A13848T C14408T C14724T C19572T C21614T A23403G G24620T C26058T C26527T C27427T C27874T G28134C GGG28881AAC C29509T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566800
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C44E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T G11083T C14408T C15324T A16044T C21855T A23403G ACAATTGGAACTGTAACTTTG25417- A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566801
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4403/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T G13183A C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566803
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C11747T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566809
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3D63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C6402T G9802T G12067T C14408T G17193T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566813
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C46C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T C5621T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566814
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3CA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T C17373Y G21255C C22227T A23403G G25049T G25062T T25202K C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566818
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C43BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C C21952T A23403G G24781T G25311T C28087T C28310T GGG28881AAC A29521T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566820
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3AE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566825
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3AD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566828
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C313A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5144T T5507A C7165T C8950T C12525T C14408T C14571T G19648T A20268G T21158C C22978T A23403G G27261T C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566829
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C403C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5835T C6896T T8749C A11782G C14408T T21570G C21575T A23403G T25473C C28253T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566830
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C43AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T C17004T G21255C C22227T G23311C A23403G C26801G C28932T T29185A G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566831
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3F6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G G25630C C26060T G26918T T27210C GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566836
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3A6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C6781T C7528T C14408T C15981T C18877T C22444T C23114T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566839
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3ED9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C C11460T G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566843
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3D09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G2755T C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566846
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3EBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C5986T A6528G T7292C T8410C G9092A C10833T C11572T C13458T C14408T C16293T C18877T C22444T A23403G T23986C G25563T C26735T C26996T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566847
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3A7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C7834T C14408T T20661C G21255C C22227T A23403G C26801G C28011T C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566850
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C437F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G219T C241T T445C C3037T C4815T C6286T C14408T G21255C C22227T A23403G T26491C C26801G C28932T A29500G G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566852
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3B87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C14408T C15324T A16044T G21123T G21295T C21855T A23403G A25505G G25906C G25996T C26645T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566855
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C448B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C18646T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T T29685C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566856
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3E24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245Y C313Y T505C C823Y G872K G2210K C3037T C3261Y A3976R T4303C C5622Y T7783C C8025Y C9996Y C14408T A15984W C20946Y C22075Y A23403G G25552T C25708Y C27945T G28221K T28382Y GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566857
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4315/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635Y C3037T G11230T C13381T C14408T C17934A A23403G T24088C G25617T C25624Y GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566864
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C42DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C5886Y C6286T C9430Y C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566865
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3DEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T A5877G G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566869
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C446D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C18646Y C20941Y G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566870
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C42EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28399Y C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566874
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3EE8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C5986T A6528G T7292C T8410C G9092A C10833T C11572T C14408T C16293T C18877T C22444T T23296C A23403G T23986C G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566877
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C3D54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28087T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566879
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3DDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T T18417C C21637T A23403G G23426T A27140G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566883
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4360/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566884
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C34B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C6781T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566885
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3BB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G23311C A23403G C26801G C28932T T29185A G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566887
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C3C48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T C18888Y G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566889
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4281/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566890
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4306/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566891
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4342/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T C18377T A23403G C25207T G25565T C25665T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566893
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C439D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T C17004T G21255C C22227T G23311C A23403G C26801G C28932T T29185A G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566896
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3BD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6825C C14408T A23403G G25563T A27241G A27932G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566900
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C447C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C18646Y C20941Y G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566902
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C3158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566908
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3E7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C313T C823T G2210T C3037T A3976G C5622T C8025T C9733T C9996T C10818T C14408T C21302T CG21304AA C21618T A23403G G23624K C25708T T28010C T28382C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566909
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C3D36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T A3469R C6286T G6344T C6983A C14408T G19563A G21255C C22227T A23403G T25202K C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566912
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C45F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3405C C14408T A23403G G25563T A27241G A27932G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566913
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3FD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T G8027T C11747T C14408T G16795T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566918
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T C14408T G18090A A20268G A23403G C25731T C27600T C28312T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566923
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3DFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C4331T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566924
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3FF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566926
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3AF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G376T C3037T G3955T T4730C C5974T C6543T C6990T C9430T C9811T C10450T G11540T C12823T C14408T C16887T A23403G C25904T G27955A T28829C GGG28881AAC G29751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566928
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C44C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566930
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3C93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566931
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3B3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21099T G21255C C22227T A23403G T25202K C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566938
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C445E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C11824T C14408T C18877T C20956T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566943
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3E51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T G28328R C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566944
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1543A C1938T C3037T T4369C C14408T T22020C A23403G C27911T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566946
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3CEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2695T C3037T C3261T G4510T C4719T C6968T C14408T A15984T G19656T C20946T A23403G C25919T C28269T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566948
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C405A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C11747T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566949
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3CB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C16289T C17678T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566952
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C43E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C823T C3037T G6404T C7765T G9044A C14408T C17690T C18877T A20276G G21724T A23403G C24784T G25537A G25563T G27561T C28087T G28851C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566954
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C404B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C25553Y C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566955
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3ECA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G20326T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566956
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C463A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T T21570G C21575T A23403G T25202K T25473C A26295T T28251G CA28253TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566958
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3E06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566960
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3B4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T G19414T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566961
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3E9D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C5986T A6528G T7292C T8410C G9092A C10833T C11572T C14408T C16293T C18877T C22444T T23296C A23403G T23986C G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566962
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3A8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C6781T C7528T C14408T C15981T C18877T C22444T C23114T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566963
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3E33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C313T C823T G2210T C3037T A3976G C5622T C8025T C9733T C9996T C10818T C14408T C21302T CG21304AA A23403G C25708T T28010C T28382C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566970
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3FE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T C17738T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566974
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C42AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566976
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4649/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566978
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3CDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1892A C3037T G8653T A9433T G10265A C14408T G15380T A17078G A19650G T21540C C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566979
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C444F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T T21147A G21255C C22227T G23311C A23403G C26801G C28932T T29185A A29394T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566981
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C44D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T C22987T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566983
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C400F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C11747T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566984
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C43F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2407T C3037T C3602T G4442T C6525T C6941T G11761T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T G28808A C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566987
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C45A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566988
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3F8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T T16404Y C17934A A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566993
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4430/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566995
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3DCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566997
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C3DBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C12295T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567065
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C887C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G G24620T C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567115
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8BEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18568T C18877T C22444T A23403G T23540Y G25563T C26735T G27852T C28854T A29319T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567150
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C87D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8064T C14408T C15240T A23403G C25006Y GGG28881AAC G28903T G28975T C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567250
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C886D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T G14181K C14408T G20433K G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567289
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA1AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25135K G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567294
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA142/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567338
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C12576Y C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567382
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA5DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T383K C1150T C2416T C3037T G8303A G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567396
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/QEUH-9C951A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567427
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C95B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C8717T G9802T G12067T C14408T A23403G C28391T GGG28881AAC G29140T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567429
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C936B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T G22205C C22227T A23403G C26801G C27881A C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567435
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C94E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5055T C8311T G11851T C14408T C14786T C15237T C16466T A23403G G24812T G25494T C26464T C26895T GGG28881AAC G28907T C29197T G29227T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567453
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9583/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T931A T1947C C3037T C3096Y A5958G C7528T C13458Y C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29171Y C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567473
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA2A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T A17937G C18032T G18105T G18662C C19524T G19669A A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567482
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA40D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T T11522G C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567489
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C991E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567501
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567522
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA151/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T G22205C C22227T A23403G C26801G C27881A C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567524
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C93F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567886
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE91C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T T11522G C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567888
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDDE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567889
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T A10984G C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567890
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G376T T469C C3037T T7767C T7984C C8047T T11459G C14408T C16658T C17104T G18214A C18796T G19656K A20268G C21216T C22879A A23403G G28851T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567891
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/ALDP-9BE84C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1190T C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567892
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDE0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T T13890C C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567894
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDC32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G410A C3037T G8653T T8854C A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567895
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/ALDP-9BE123/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T T1813A C3037T C4158T C8318A C10615T T13954C C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567897
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC6AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567901
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE150/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567902
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDBAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1302T C3037T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567906
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T C4927T C9693T G9761T C14408T A16761G C18744T T19839C A23403G C23422T C25000T C26464T C27600A GGG28881AAC C28905T G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567907
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/ALDP-9BE1D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567909
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE2A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7240C C8683T C12084T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567910
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE82E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A15639G A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567911
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE8D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567913
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE75E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6900G C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567915
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC6EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1471T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567919
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE4C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6762T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T C25000Y G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567920
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC7F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T G4399T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567921
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE994/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C11747T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567924
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE800/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T C18377T A23403G T25202K C25207T G25565T C25665T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567927
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDCE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T G27621T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567928
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567931
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDBDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2676T C3037T C4391A C11124T C14408T G14792T C15848T C15857T G19254T T19893C A21137G G22047T G22335T A22790R A23403G A25167G C25889T G27217A G28001T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567932
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T G6352T C6445T C10868T C14408T G15652T G22022C A23403G G23438T GGG28881AAC C29095T G29688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567933
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE035/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C A21137G C21682T A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567936
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BD9B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C11747T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567938
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE8F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5434C T9735C C14408T A15249T A23403G G25617T G26951C G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567939
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BD9FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C5646T C6286T C8950T G9805T C14408T C17288T G19272T G21255C C22227T A23403G T25248C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567940
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDA65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567942
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEB43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2445T C3037T C9430T C14408T G14428K T15156C C20368T A23403G G26153K C26527T T28204K GGG28881AAC C29149T G29239A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567943
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDA1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C5646T C6286T C8950T G9805T C14408T C17288T G19272T G21255C C22227T A23403G T25248C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567944
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/ALDP-9BE92B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T A16560G G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567945
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC8C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T A2576T C3037T C5175T C6401T A10323G C11152T C14408T T17742C A23403G G23593T C26058T GGG28881AAC A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567946
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDFFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567949
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDBCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C17934A A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567950
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567951
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE18D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567953
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE949/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T T1947C T2901C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567957
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE27B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567960
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDC05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1076T C1419T C3037T C4158T C8318A C10615T C14408T G18859T A19682G G21624T A23403G G25687A C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567961
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDA29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15352Y G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567963
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE6D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567964
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDD20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567965
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE79A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T A9193T C10833T C11124T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567967
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE1E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C13458T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28674T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567969
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE044/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567970
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE8E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683Y C3037T G11230T G11401T C14408T A23403G T24088C G25471T G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567974
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDD99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567975
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDC9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C7390T C14408T C15324T A16044T G21295T C21855T A22252T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567977
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDC14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2421G C3037T C8683T C14408T G15406T C18657T C21618T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567981
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE017/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T G19254T T19893C C20956T A21137G C21682T A23403G C25889T G27217A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567982
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDB80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567986
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEAFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2445T C3037T C9430T C14408T T15156C C20368T A23403G G26153T C26527T GGG28881AAC C29149T G29239A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567987
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC94B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567988
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEB25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567989
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC6BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567990
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BED3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G10870T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567993
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE78B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C16260T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567994
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEC6E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C2523T C3037T G3994A C5730T C9924T G11083T C11109T C14408T C18877T TAT22189- C22444T A23403G C24138A G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567995
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDAFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1594T C3037T A3374C C5700A C10537T G14277T C14408T A17538G C21614T C23380T A23403G G23587C C25517T C26885T GGG28881AAC G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567996
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T T13954C C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567997
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567998
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/ALDP-9BE475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10449T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568001
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDC23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T A13943R C14408T G15957T C19017T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568002
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC69F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568003
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE68E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568005
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568006
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEA91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C4276T C6286T C6807T C7926T C9745T C14408T C20178T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568007
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE6CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568008
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDC6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T T13954C C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568009
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDCD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C3037T C5575T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568010
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE985/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G T23626C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568014
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEC22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C TTA516- C3037T C6286T C10207T C14408T G17721T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568015
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC750/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25471T G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568016
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE1F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G250T C832T C1710T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568017
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE9B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C17934A A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568021
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEB70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T C23191T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568025
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25563T A27241G A27932G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568028
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC92D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T C16362Y A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568031
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE9C1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C17934A A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568032
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC899/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC TCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29729- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568033
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568034
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC84E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568035
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC811/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568036
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEAEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24797T C25517T GGG28881AAC C29073T C29627T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568038
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDDA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568039
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDCF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC T28981C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568041
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T A10984G C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568042
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEB8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C584T G1274T C3037T G7393A G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568044
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDA38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568045
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE2B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C10138T C12525T C14408T G19648T A20268G T21158C C23320T A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568046
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEABF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T A9193T C10833T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568050
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE81F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G G24262T C26060T C27661T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568053
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEA82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568056
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE9A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T A19210R G21255C C22227T A23403G T23626C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568058
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEC8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568061
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDDB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568063
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE7C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C16260T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568065
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9541Y C9803T A13533G C14408T A23403G G25062A G25617T G25906T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568066
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE080/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G25563T A27241G A27932G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568067
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568069
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDD02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15342T C15981T G17616A T18488C C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568076
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE0DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T C22858T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568079
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE83D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C12439T C14220T C14408T G18310A G20176T G21220T G21255C C21614T C21714T C22227T A23403G G24977C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568081
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE4B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T A2576T C3037T C5175T C6401T A10323G C11152T C14408T T17742C A23403G G23593T C26058T GGG28881AAC A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568082
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDD3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T T4330C C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28253Y C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568084
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEB61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7393A G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568085
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEC04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T G11083T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568086
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEC31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C24023Y C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568087
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE69D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3614A T7767C C8047T C11835T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- G21800T C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568091
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A15639G A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568092
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE7D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2648T C3037T C8683T C14408T G15406T C21637T A23403G C23758T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568099
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE958/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T T1947C T2901C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568100
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE8A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568101
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE026/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568103
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/ALDP-9BE466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10449T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568104
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/ALDP-9BEA73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568105
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC7C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C8660T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568106
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE1AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568107
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE76D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T A11533G C14408T G21255C C21614T C22227T A23403G C24334T T26424C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568108
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BED4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568110
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDD6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568111
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568112
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDCC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G G25947C C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568113
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE93A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G11083T G11365T C13297T C14408T C17676T G21255C C21614T C22227T C22388T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568114
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEADD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568116
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Wales/ALDP-9BE1C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568117
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC85D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC TCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29729- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568118
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDDF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568119
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC802/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T T13954C C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568120
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEB34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7393A G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568121
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE202/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C1962Y C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T G27602T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568122
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC680/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568123
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDBBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26150T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568125
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE0CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G376T T469C C3037T T7767C T7984C C8047T T11459G C14408T C16658T C17104T G18214A C18796T A20268G C21216T C22879A A23403G G28851T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568126
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDD5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C T21432C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568128
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE1BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568129
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDE2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C A2311G C3037T C6286T C6807T C7926T C9745T T13890C C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568130
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC8F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568132
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDE1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T G21800T A23403G G25687A GGG28881AAC A29357R T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568133
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE90D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T T11522G C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568134
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC8E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21772Y C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568135
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDD11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568137
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC7BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T T1947C T2901C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568140
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDB08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1319A C3037T C3634T C3884A C5301T C14408T C15324T G17721T G18898T C21575T T22246C A23403G C24374T G25784T C26894T C28923T G29468C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568141
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC86C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568146
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE23F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10748A G11083T G11365T C13297T C14318Y C14408T C17676T G21255C C21614T C22227T C22388T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568149
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC671/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568150
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE220/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C683T C3037T G4105T C4391A C11124T C14408T G14792T C15848T G19254T T19893C G21624A A23403G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568152
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE0EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G376T T469C C3037T T7767C T7984C C8047T C10977Y T11459G C14408T C16658T C17104T G18214A C18796T A20268G C21216T C22879A A23403G G28851T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568154
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC8D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568156
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE2D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1076T C1419T C3037T C4158T C8318A C10615T C14408T G18859T A19682G G21624T A23403G C25504A G25687A C26571A G27670T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568157
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC6CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568158
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE0F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T G24712T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568160
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC8B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T A2576T C3037T C5175T C6401T A10323G C11152T C14408T T17742C A23403G G23593T C26058T GGG28881AAC A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568161
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE6BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9430T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568162
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDAED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G991A T1947C C3037T C7528T C8964T C12318T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568163
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE4A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568165
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE976/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568166
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE17E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568167
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDA0B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C5646T C6286T C8950T G9805T C14408T C17288T G19272T G21255C C22227T A23403G T25248C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568168
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BD9E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C11747T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568169
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC978/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3117T C9096T A11923G C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568171
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BD9A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C11747T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568173
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE6E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G G25302T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568174
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC7D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5184T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568175
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC7E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568178
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDD8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G15743R G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568180
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC91E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T G22918K A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568181
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEC40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A3210G C6286T G6553A C7926T C9745T C13329T C14408T G21255C C22227T A23403G C26801G C27741T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568183
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC8A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C710A C1191T C3037T G3251A C12924T C14408T C21575T C21637T A23403G C23525T A28169G GGG28881AAC C28905T G29781T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568185
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BECF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568186
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE703/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G G25302T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568188
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC6F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T A20599C G21255C C22227T A23403G C25207T C26801G C27944T G28371T C28932T G29645T C29733T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568189
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDBF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A G11083T C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC C29200Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568190
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE7F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27459K C27661T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568192
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC87B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T G14874T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568193
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDB17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568196
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDD7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C13767Y C14408T C21302T CG21304AA C21627Y A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568198
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC76F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568199
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE09F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C13115T C14408T G19340A G21255C C22227T A23403G G25049T G25062T C26801G C28657T G28806A C28932T C29366T C29421T G29645T G29711T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568200
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEB52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568201
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE211/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15342T C15981T T18488C C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568205
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE0BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568206
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE6AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568207
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC90F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G13576T C14408T A23403G GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568208
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC83F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T T1813A C3037T C4158T C8318A C10615T T13954C C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568209
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC95A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568211
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC741/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T C14571T G19648T A20268G T21158C C22978T A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568218
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDC7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2135T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C27213T C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568221
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE16F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C TTA516- C3037T C6286T C10207T C14408T G17721T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568222
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC6DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568223
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B82EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C T22152C C22227T A23403G A26588T C26801G C27944T C28932T C29358A G29645T C29739T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568229
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B9BA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568232
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B9B75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568234
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B9B84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568243
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B9B93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568244
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568252
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B9A69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C679T C3037T C6286T C7093T A7455G C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568253
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B9A5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568259
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B9AA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568261
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T C14408T A20268G A23403G C25731T T26129Y C28833T C29247T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568267
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B9BB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T G14055T C14408T G21255C C21614T C21691Y C22227T A23403G C26801G C27944T C28932T G29645T C29721Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568272
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G6943T G14202T C14408T G18337T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568274
 2020-09-09 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B9AB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568648
 2020-09-09 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1550/2020
 ATTA1- C241T C1059T C3037T C10319T C14408T A18424G C21304T A23403G G25563T G25907T C26571T C27964T C28472T C28869T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568649
 2020-09-09 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1551/2020
 ATTA1- C241T C1059T C3037T C6628T C8829T A10323G G11417T C14408T G20679T A23403G G25563T C27131T G28842T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_568651
 2020-09-09 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1553/2020
 ATTA1- C241T C2644T C3037T G8179A A11000T C11124T C14408T C21575T A23403G GGG28881AAC C28887T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_568652
 2020-09-09 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1554/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C5512T G8083A C9344T C10319T C11767T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_568654
 2020-09-09 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1556/2020
 AT1- C241T C1059T C3037T C3738T C10319T C14120T CT14408TC C17135T G19962T A23403G G25563T C27964T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568657
 2020-09-09 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1559/2020
 AT1- C241T C1059T C3037T C3602T G13771A C14408T C15960T C16762T C21008T C21595T A23403G G25563T C25672T A25934G G26842A TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_569211
 2020-09-09 2020-10-02
 France hCoV-19/France/IHU-1582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T C11962G G13993T C14408T G15766T A16889G G17019T C17747T C18877T G22992A A23403G C23520T G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_529238
 2020-09-10 2020-09-10
 United Kingdom hCoV-19/England/NORW-EEACE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G C25504T G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529240
 2020-09-10 2020-09-10
 United Kingdom hCoV-19/England/NORW-EE563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529241
 2020-09-10 2020-09-10
 United Kingdom hCoV-19/England/NORW-EE581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T G20125A C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529242
 2020-09-10 2020-09-10
 United Kingdom hCoV-19/England/NORW-EE5AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529243
 2020-09-10 2020-09-10
 United Kingdom hCoV-19/England/NORW-EE730/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529244
 2020-09-10 2020-09-10
 United Kingdom hCoV-19/England/NORW-EE76D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529245
 2020-09-10 2020-09-10
 United Kingdom hCoV-19/England/NORW-EE77C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529246
 2020-09-10 2020-09-10
 United Kingdom hCoV-19/England/NORW-EE78B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529247
 2020-09-10 2020-09-10
 United Kingdom hCoV-19/England/NORW-EEA19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529248
 2020-09-10 2020-09-10
 United Kingdom hCoV-19/England/NORW-EEAA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529249
 2020-09-10 2020-09-10
 United Kingdom hCoV-19/England/NORW-EEB16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_529250
 2020-09-10 2020-09-10
 United Kingdom hCoV-19/England/NORW-EEB9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T G20125A C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540701
 2020-09-10 2020-09-21
 United Kingdom hCoV-19/England/NOTT-113106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C8917T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23557T C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540702
 2020-09-10 2020-09-21
 United Kingdom hCoV-19/England/NOTT-113115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T A1163T C3037T T3256C C5622T G11083T G11926T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C27661T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540743
 2020-09-10 2020-09-21
 United Kingdom hCoV-19/England/SHEF-C955F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T T13890C C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540886
 2020-09-10 2020-09-21
 United Kingdom hCoV-19/Scotland/EDB7748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G T24769C C25460T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541581 MW031016
 2020-09-10 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A10317G C14408T T15993C C18486T A20268G T22162C A23403G C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541587 MW031022
 2020-09-10 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4719T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T G27877T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541593 MW031028
 2020-09-10 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3190G C3695T C9994T C10319T C14408T A18424G C19868T A21037G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541594 MW031029
 2020-09-10 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1462/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A G8179T C10319T C14408T C14599T C14805T A18424G C21304T A23403G G25563T G25907T C27964T A28095C G28329T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541599 MW031034
 2020-09-10 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1467/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C140T C241T C482T A696C C3037T G3871T T3931C C4226T C4832T C5672T A7837C G11083T C14408T C16017T A21137G A23403G G25963A G26199T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541603 MW031038
 2020-09-10 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1471/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T T2734C C3037T C5869T G8083A C10319T C14408T C14805T C15763T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541605 MW031040
 2020-09-10 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541608 MW031043
 2020-09-10 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T T25648C G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541609 MW031044
 2020-09-10 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T C17550T A18432G A23403G G23900C A24253T G25563T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541610 MW031045
 2020-09-10 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T A3262G T3745C C11674T C11956T C12025T C12756T C14408T T19839C A23403G C23707T G27008T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541612 MW031047
 2020-09-10 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1480/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1288T C3037T C11050T C13426T C14408T C14937T C21811T G21893A C22783T A23403G C24904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547819
 2020-09-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-19557/2020
 ATTAAAGGTTTATACCTTC1- C241T C475T C1059T C3037T C5986T C12754T C14408T A23140G A23403G G25563T A28389T C29837T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547820
 2020-09-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-19558/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A831G T1562C G2035T C3037T A3262G T3745C C11674T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547821
 2020-09-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-19560/2020
 ATTAAAGGTTTA1- C241T A696C C1427T C3037T G3871T T3931C C6285T C14408T C19524T C20429T A23403G C28977T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547822
 2020-09-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-19565/2020
 ATTAAAGGTTT1- C241T A696C C3037T G3871T T3931C C4226T C5672T C6990T A7837C C14408T G19677T A23403G G25947T G28079T C28977T G29744T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547823
 2020-09-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-19580/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A831G T1562C G2035T C3037T A3262G C11674T C11956T C12025T C12756T C14408T T19839C A23403G C23707T GGG28881AAC C29769T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_547824
 2020-09-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-19586/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T G17302T A23403G G23900C A24253T G25563T C28821A G29808T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547825
 2020-09-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-19593/2020
 ATTAAAGGTTTA1- C241T A831G T1562C G2035T C3037T A3262G T3745C C11674T C11956T C12025T C14408T T19839C A23403G C23707T G28631A GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547826
 2020-09-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-19596/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C3037T C14408T A23403G C28869T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547827
 2020-09-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-19598/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T A831G T1562C G2035T C3037T A3262G T3745C C11674T C11956T C12025T C12756T C14408T T19839C A23403G C23707T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547828
 2020-09-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-19599/2020
 ATTAAAGGTTTATAC1- C241T A831G T1562C G2035T C3037T A3262G T3745C C11674T C11956T C12025T C14408T T19839C A23403G C23707T C28708T C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547829
 2020-09-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-19600/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28869T G29402T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547831
 2020-09-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-19604/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28869T G29402T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547833
 2020-09-10 2020-09-24
 United States hCoV-19/USA/WI-GMF-19628/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T C1059T C3037T C3773T C7086T C14408T C15654T G17302T A23403G G23900C A24253T G25563T C28821A G29808T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549341
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C497D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T C4752T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C A27403G G28851T G28975C G29399A G29427A ACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCT29723- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549461
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C4773/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549466
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C4807/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549469
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C4843/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G G27147T C27389T C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549471
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C498C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8320A C8683T C10165T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549472
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C49AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C A27403G G28851T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549473
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C4A01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T G9049A C10228T G12067T C14408T C18877T G21867T C22444T A23403G G24821T G25563T C25791T C26735T C27427T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549474
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C4A2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20356T A20742C C21952T A23403G G24781T G25311T C27002T C28087T C28310T GGG28881AAC A29521T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549475
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C4A6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G G26951T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549476
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/MILK-9C4AB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C10833T G12514A T13606C C14408T A20268G C22858T A23403G C25886T C28833T A29720G C29784T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549521
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/NOTT-1136AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549555
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8578/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1344C C3037T A4291T C8683T C14408T G15406T C16260T C19862T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549566
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B86A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T A15779G C21855T A23403G A25505G G25906C G25996T C27002T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549576
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B86C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T C16362T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549595
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B85C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C7113Y C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549610
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C3157T G3328T G4006T C5170T C6286T G11132T C14408T G18105C G21255C C22227T A23403G C26801G G27967T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549617
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549657
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549708
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8596/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T T19638C G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549724
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B87AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549737
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B8693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C3241Y G9802T G12067T C14408T C17135T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549738
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B85B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T ATG518- G1210T C3037T G9802T G12067T C14408T G22344T A23403G T27869C GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549791
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/England/QEUH-9B85A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29017A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560086
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A698/2020
 ATTA1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_560087
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A6A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560097
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A74A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560098
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A759/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G204T C241T T445C C3037T C6286T C7389T C14408T C15450T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560099
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A768/2020
 ATTAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T G28321T C28932T G29645T

EPI_ISL_560100
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A777/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G15672T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560105
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A7C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_560107
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A7E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C24026Y C26801G C27944T C28932T G29645T

EPI_ISL_560115
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A874/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACC1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29679T

EPI_ISL_560121
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A8DE/2020
 ATTAAA1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T

EPI_ISL_560123
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A8FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560130
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A962/2020
 ATTAAAGGTTTATAC1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560133
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A9AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C T511C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T A28792T C28932T G29645T C29870M

EPI_ISL_560134
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A9BD/2020
 ATT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560138
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A9F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C4421T C6286T C7926T C9745T C13436T C14408T G21255C C22227T A23403G C26801G C27879T C27944T C28932T G29645T

EPI_ISL_560149
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AAAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AAA29901-

EPI_ISL_560151
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AAC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAAC1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560157
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AB20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C11396T C14408T C18652T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T C29870M

EPI_ISL_560158
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AB3F/2020
 ATTAAAGGTTTATACCT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_560160
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AB5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T AAAA29900-

EPI_ISL_560165
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ABA8/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A1163T C3037T T3256C C5622T G11083T C12398A G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28253T GGG28881AAC G29227T C29466T A29771G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_560170
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ABF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560173
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AC2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T A14955W G19542T C19718T C22388T A23403G C26060T C28253T GGG28881AAC G29227T C29466T A29771G TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_560187
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AD0C/2020
 ATTAAAGGTT1- G204T C241T T445C T511C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T A28792T C28932T G29645T

EPI_ISL_560188
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AD1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T G11083T C14408T C15480T G21255C C21614T C22227T C22329Y A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560189
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AD2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AA29902-

EPI_ISL_560192
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AD57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28289A C28932T G29645T

EPI_ISL_560193
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AD66/2020
 ATTA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AAAAAAAAAAAAAAAAAAAAAAAAAAA29877-

EPI_ISL_560196
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AD93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T445C C3037T C6286T T13560Y C14408T G19563R G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T

EPI_ISL_560204
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AE18/2020
 ATTAAAGGTTTATACCT1- G204T C241T T445C C3037T C3624T C6286T C14408T C15480T G21255C C21614T C22227T A23403G G25273K G26779T C26801G C27944T C28932T G29645T AAAA29900-

EPI_ISL_560211
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AE81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C T511C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T A28792T C28932T G29645T

EPI_ISL_560214
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AEBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G G26158T C26801G C27944T C28932T G29645T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_560215
 2020-09-10 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AECD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560426
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/AG-ETHZ-280188/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C1437T C1513T C3037T C6286T A6821R G11521T C14408T G21255C C22227T G22346K C22377T A23403G C26728Y C26801G C28706T C28932T G29474T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560428
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/AG-ETHZ-280247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2470T C2706T C3037T C4084T C14408T G18907K A20268G A23403G C25731T C28833T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560446
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T C28706T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560447
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T G18859K C18877T T21480Y T21655Y C21658M C22347S G22992A A23403G G25563T C25613Y C25710T C26735T T26876C C27131T C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560448
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280224/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T T5395Y T5408Y G5411K G5629T T8464Y G9526T A9859W C11497T G11972A G13993T C14408T G15766T A16889G G17019T C18877T G21490S T21539Y T21610W A21619R A22382W G22992A A23403G G25563T C25710T C26735T T26876C C27131T C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560449
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18348Y C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560450
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2094Y C3037T C4543T G5629K A6132R G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T G26700K C26735T T26876C C27434T G28975C C29296Y G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560452
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/BE-ETHZ-280245/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K C7834Y G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27131T C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560464
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/BL-ETHZ-280187/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671Y C14408T C14805T G17278T AT20284TC G21255C T21582Y C22227T CC22376MM C22383M T22925Y G22932K A22934R A22958W C23099M T23105W T23115K A23403G C26801G A27755T C28932T G29645T C29743T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560465
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/BL-ETHZ-280189/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G419R T445Y G529K G599R C2675Y C3037T A3813R C6286Y T10076W C13671Y C14408T C14805T A16210W A16227R G17278T AT20284TC G21255C C22227T T22953Y A23403G C26801G A27755T C28932T G29645T C29743T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560466
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/BL-ETHZ-280190/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671Y C14408T C14805T G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T C28932T G29645T C29743T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560469
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/BL-ETHZ-280232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671Y C14408T C14805T G17278T AT20284TC G21255C C22227T A23403G C26801G A27755T C28932T G29645T C29743T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560473
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/BS-ETHZ-280226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T A476G G491S T2537G C2706T C3037T G3731A C6573T G12191T G12769T C14408T T16479C A18836G A23122M A23403G G24770R G25352T GGG28881AAC G28904K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560474
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/BS-ETHZ-280227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2536T C3037T C4206T G9130T C14408T C16163T G17334T A23403G C24133Y A27298T T27319C G27987T G28487A C28868T GGG28881AAC G29706T C29762T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560475
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/GE-ETHZ-280201/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T G1721T C1929T C2508Y C3037T C6195Y C6696T C14408T A17008G T18083C C18568T G21641T A23403G T23695A C28657Y GGG28881AAC G29777T G29779T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560480
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/SG-ETHZ-280233/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C3037T C6286T C13671Y C14408T C14805T C16049T G17278T AT20284TC G21255C C22227T A23403G C26645T C26801G A27755T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560482
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/SZ-ETHZ-280242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4002T C5284Y T5430K G5950K G10097R A10197R C11752T C13536T T14237G C14408T G19732T G20931T A22904R A23403G C23731T CAG28869AGA GGG28881AAC G29692K TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560523
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560528
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280229/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T445C C920T C3037T C5170T C6286T G8083T G11132T C14408T G18525C G21255C C22227T A22904W T22913W T22917K A22975R T23052Y C23099Y A23122M A23403G C26801G G27226T C28932T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560529
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2706T C3037T C5339T C9430T G11375A C14408T A19505G G19656A A20268G T22516W T23052Y A23122M A23403G C25731T C28833T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560530
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280231/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T G3047K A6084R C6286T C14408T G17259K T20661C G21255C G21468T C22227T A22924M C22938M G22959K C23078M A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560531
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C2706T C3037T T5189Y C5339T C9430T G9890K T10076W G11375A C14408T A16262R A19505G A20268G A21612R A22379R A23403G C25731T C28833T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560532
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280240/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T418W T445C C3037T C6286T T10076W C14408T T20661C G21255C G21468T C22227T T22909W G23069R A23109R A23403G C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560533
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/VD-ETHZ-280241/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T469Y G521K A642M G2995T C3037T C4002T T4871C C6449T G10097R C10252Y G10265R C13536T C14408T C19366T T21154K A22934H C23043Y A23403G C23731T T27808C G28541T GGG28881AAC TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560539
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/VS-ETHZ-280218/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C3037T C4543T G5629K G9526T C11497T C13335Y G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27434T G28975C G29399A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560540
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/VS-ETHZ-280237/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C222T C241T T445C C3037T C3619T C6286T C8299Y C8802T G11083K C14408T T20661C G21255C G21468T C22227T A23403G C26151Y C26801G C28932T C29366Y C29386T G29645T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560553
 2020-09-10 2020-09-29
 Switzerland hCoV-19/Switzerland/ZH-ETHZ-280209/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T T418Y C452M T471W T477W T1863G C2416T C3037T T4705W G8371T C9430T C14408T A15477T C18395T AGA20622TTT T22909W T22917W A23089W T23091K T23115W A23403G C23730T G25563T A26319G C28854T G29044A TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_563499
 2020-09-10 2020-09-30
 Australia hCoV-19/Australia/VIC11937/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C9996T C14408T G16647T C17135T C18555T G22927T G22992A G23401A A23403G A28416T GGG28881AAC GATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29843-

EPI_ISL_563505
 2020-09-10 2020-09-30
 Australia hCoV-19/Australia/VIC12010/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G8653T C14408T G16647T C18555T C18568T G22992A G23401A A23403G C23625T G24751T T25303C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563554
 2020-09-10 2020-09-30
 Australia hCoV-19/Australia/VIC12356/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563558
 2020-09-10 2020-09-30
 Australia hCoV-19/Australia/VIC12389/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T T1297C C3037T A3186M T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563585
 2020-09-10 2020-09-30
 Australia hCoV-19/Australia/VIC12737/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563587
 2020-09-10 2020-09-30
 Australia hCoV-19/Australia/VIC12743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T T1297C C3037T A3186C T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563589
 2020-09-10 2020-09-30
 Australia hCoV-19/Australia/VIC12756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563593
 2020-09-10 2020-09-30
 Australia hCoV-19/Australia/VIC12776/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T T1297C C3037T G5332R T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563596
 2020-09-10 2020-09-30
 Australia hCoV-19/Australia/VIC12803/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T T1297C C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563601
 2020-09-10 2020-09-30
 Australia hCoV-19/Australia/VIC12851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T G5509A C6196T T7540C C9491T C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563871
 2020-09-10 2020-09-30
 Australia hCoV-19/Australia/VIC13898/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T C7471T T7540C C14408T G16647T A17337G G17721T C18555T G22992A C23191T G23401A A23403G G27147K GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563872
 2020-09-10 2020-09-30
 Australia hCoV-19/Australia/VIC13900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C506T A1163T C3037T C7600T G7798T C13620T C14408T C14645Y T17070Y A22351W A23403G T23548C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563882
 2020-09-10 2020-09-30
 Australia hCoV-19/Australia/VIC13919/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_566424
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1F05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2407T C3037T C3602T G4442T C6525T C6941T G11761T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566425
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2C85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T C20132T G21255C C22227T A23403G G24095T C26801G C27944T C28507T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566432
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1F9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G G26951T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566433
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2C0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T G17974T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566436
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C204D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3583T C6026T T7767C C8047T A9066G G12988T C14408T G15598A C16394T C17104T G18028T A20268G TACATG21765- C22127T C22879A A23403G G23876A T24910C G25218T G25947T T26972C C27800A C29274T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566437
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2D37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G G26501T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566439
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C26D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C11747T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566440
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C2EE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T C6286T C10078T G11132T G11417T C14408T G21255C G22051T C22227T A23403G C26801G C28932T G29179T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566441
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2793/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T168C C241T C3037T A13308G C14408T C19602T A23403G G25785T T27428C G27877T G28487C GGG28881AAC G28899A C29364T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566443
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566449
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2827/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566450
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2C3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1839T T1947C C3037T C7528T C8660T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566452
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2687/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C25624T T26609C C26801G A27609C C28411Y C28932T C29073T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566458
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1E35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A G29447T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566459
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2C67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G G25362T C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566461
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2A30/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566462
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2872/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566463
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2DCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2407T C3037T C3602T G4442T C6525T C6941T G11761T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566466
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C272A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T C7081T G11132T C14408T G19723T G21255C C22227T A23403G G25987T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566468
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2890/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T C5866T G6341A G6352T C10776T ATT12627- C14120T C14408T C15540T G17019T A23403G C27945T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566470
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1EAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566471
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C1E53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10908T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566472
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C29CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C16394T C17104T G18028T A20268G TACATG21765- C22127T C22450Y C22879A A23403G G23876A T24910C G25218T G25947T T26972C C27800A C29274T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566475
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2F22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18568T C18877T C22444T A23403G G25563T C26735T G27852T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566477
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2CA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T G20477T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566478
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2766/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A G2072A C3037T G5572T C6255T T7767C C8047T A10978T G11083T C14408T C17104T A20268G T20799C T22189C C22879A A23403G C27294T GAT27382CTC G28375T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566480
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C1F41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566481
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2AA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566482
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2E70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C G1738K C3037T G4006T C5170T C6286T C7081T G11132T C14408T G21255C C22227T A23403G G25726T G25987T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566483
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2EBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C14408T G22363R A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566484
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C270C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2695T C3037T C3261T G4510T C4719T C6968T C14408T A15984T G19656T C20946T A23403G C25919T C28269T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566487
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2E8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T T4195A C6286T C14408T G21255C G22014K C22227T A23403G G25049T G25062T T25202K C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566488
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2B6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C5497T C9430T C10582T C12823T C14408T A15165G G19101T A23403G C25728T C27425T GGG28881AAC T29014C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566489
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C1E44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28087T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566491
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2863/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566496
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2CEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T C5866T G6341A G6352T C10776T ATT12627- C14120T C14408T C15540T G17019T A23403G C27945T GGG28881AAC G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566497
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2A12/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C5986T A6528G T7292C T8410C G9092A C10833T C11572T C13458T C14408T C16293T C18877T C22444T A23403G T23986C G25563T C26735T C26996T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566498
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2B97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566499
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G11083T G12988T C14408T G15598A G16206T C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25489T G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566501
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2B5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G529T C3037T G4399T C5173T C9120T C14408T A23403G G25477A G25913A G28845A TCACCGAGGCCACGCGGAGTACGATCGAGTGTAC29729G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566503
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C2FB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G15672T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566506
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2B88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T T7292C T8410C G9092A C10833T C11572T C14408T C16293T C18877T C22444T A23403G T23986C G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566509
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1F7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C11747T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566511
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C29BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1722T C2509T C3037T C6286T C6538T C10969Y C14408T G21255C C22227T G22468T A23403G C26801G C27944T C28542Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566512
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2678/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C25624T T26609C C26801G A27609C C28932T C29073T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566514
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1E17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T T21570G C21575T A23403G T25473C A26295T C27503T T28251G CA28253TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566516
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C2EF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566520
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C1E62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566521
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1ECC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566522
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2CD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4993T C5866T G6341A G6352T C10776T ATT12627- C14120T C14408T C15540T G17019T A23403G C27945T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566523
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C25E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C5239Y C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28507T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566525
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2BB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C5986T A6528G T7292C T8410C G9092A C10833T C11572T C13458T C14408T C16293T C18877T C22444T A23403G T23986C G25563T C26735T C26996T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566526
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C299D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2028T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566532
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2BC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C5986T A6528G T7292C T8410C G9092A C10833T C11572T C13458Y C14408T C16293T C18877T C22444T T23296Y A23403G T23986C G25563T C26735T C26996Y C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566536
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2BF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2407T C3037T C3602T G4442T C6525T C6941T G11761T C14408T C15017M C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T G28808R C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566539
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2D19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T A11908R C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566540
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C206B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18568T C18877T C22444T A23403G G25563T G25654K C26735T G27852T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566542
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1F6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C21660T G22205C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566546
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C27B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26177T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566549
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C2A03/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566550
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C260F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566551
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2D73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G23311C A23403G C26801G C28932T T29185A G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566553
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C26C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566556
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2A5E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C829T C1960T C3037T C5301T C5907T C7948T C13247T C14408T C14937T A15945G T18144C T21982C A23403G C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566557
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2C2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T G4583A G6404T C8683T C14408T G15406T G21123T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566558
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1EF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T G28085T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566561
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2669/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C25624T T26609C C26801G A27609C C28411Y C28932T C29073T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566562
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2A7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C10474T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566565
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2C94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C8660T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566566
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C2E43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C14790Y C15480T G15672T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566568
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1FAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A11782G C14408T T21570G C21575T A23403G T25473C A26295T T28251G CA28253TC GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566569
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2757/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566572
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C1FE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566574
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1F8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1718T C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566577
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2BD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566578
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2696/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C25624T T26609C C26801G A27609C C28932T C29073T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566581
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2D46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C11747T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566590
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2A4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G25567A C28849G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566592
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C2F13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566594
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2A8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C25624T T26609C C26801G A27609C C28932T C29073T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566596
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1EBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T G17974T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566599
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2D64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C5239T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T C29732T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566600
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2845/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C10165T C14408T G15406T C21637T A23403G G23426T G25166C A28169G GGG28881AAC C29627T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566601
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2E52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T G12613A C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566602
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2C1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C9988T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566604
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C26B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566606
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2A21/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6616G C12809T C14408T G15906T C17000T G17278T TTA21991- A23403G G25912T G28280T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566607
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2B4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C13860T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29402T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566613
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C29F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566614
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C2FD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T C6286T A9409G C10078T G11132T G11417T C14408T G21255C G22051T C22227T A23403G C26801G C28932T G29179T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566615
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2924/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T C5621T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566620
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2C49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C C21859T C21952T A23403G G24781T C28087T C28310T GGG28881AAC A29521T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566621
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2D0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C26801G C27944T C28932T G29645T C29732T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566623
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2E61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C7390T C14408T C15324T A16044T G21295T C21855T A22252T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566624
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2B79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T C14408T G18090A A20268G A23403G G24124T C25731T C27600T C28312T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566627
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C25D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566629
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C25C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28507T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566630
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2D82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2184G C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566632
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C271B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C25096T C26801G A27848G C27944T C28932T G29645T C29732T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566634
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C478T C1513T C3037T C6286T C14408T G21255C C21627T C22227T G22346T C22377T A23403G C25831T G26268T C26801G G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566639
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2836/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C11747T C14408T G16795T G21255C C21772Y C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566640
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C264B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C25624T T26609C C26801G A27609C C28411Y C28932T C29073T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566641
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C26A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C C21952T A23403G G24781T C28087T C28310T GGG28881AAC A29521T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566646
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2AB8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G9974A G11132T C14408T G21255C C22227T A23403G C25624T T26609C C26801G A27609C C28932T C29073T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566647
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2A6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G529T C3037T G4399T C5173T C9120T C14408T T20799Y A23403G G25477A G25913A C27625Y G28845A TCACCGAGGCCACGCGGAGTACGATCGAGTGTAC29729G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566649
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C262D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C25624T T26609C C26801G A27609C C28932T C29073T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566650
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C1F50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566651
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C205C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C23895T C26461T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566652
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2739/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566653
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1E26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566656
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1FF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C710A C1191T A2550C C3037T G3251A C12924T C14408T C21575T C21637T A23403G C23525T A28169G GGG28881AAC C28905T G29781T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566660
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2BA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566663
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C1DFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A4627G C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566664
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C2EDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566668
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2D55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1718T C3037T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566669
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2E9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C10474T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566671
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1E80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T G13183A C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566679
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C31EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1228T C3037T C4655T G5305A A5958G C14408T C14805T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566684
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3677/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15342T C15981T G17616A T18488C C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566686
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C2F9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566689
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C3808/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566691
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C37ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566695
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C35E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C G1843A G2072T C3037T G4006T C5170T C6286T G11132T C14408T C16428T G21255C C22227T A23403G T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566696
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C460D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T A12927M C14408T C20941Y G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566702
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G25567A C28849G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566704
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566709
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C36E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T C4752T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C A27403G G28851T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566712
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C3695/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10002T G11230T C13381T C14408T C17934A C21575T C22522T A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566714
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C33F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T C3037T C14408T C15755T T19839C G20006T G22132A A23403G C26111T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566715
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C34AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20742C C21952T A23403G G24781T C28087T C28310T GGG28881AAC A29521T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566716
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C398D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C9430T C14408T A23403G C24502T G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566717
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C3932/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T C6286T C10078T G11132T G11417T C14408T G21255C G22051T C22227T A23403G C26801G C28932T G29179T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566718
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C41EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566719
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C36C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566720
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3738/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C A27403G G28851T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566722
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C389F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C478T C1513T C3037T C6286T C14408T G21255C C21627T C22227T G22346T C22377T A23403G C25831T G26268T C26801G G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566736
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3729/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1392T G2782T C3037T C10377T C14408T G15181T C18744T T19839C A23403G C25626T C26022T C27002T C28708T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566737
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1468G C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566738
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C33BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T G9526T G11083T C14408T A20268G G21724K C22551T A23403G C25731T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566739
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4227/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T A25917G C27513T GGG28881AAC T28889C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566743
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3361/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6364A T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566745
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C40A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28674T C28932T G29254T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566750
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3880/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T G4255A T7767C C8047T C11152T G11516T T13212C C13372T C14408T C17104T T19242C A20268G C22879A A23403G C23664T C25624T G27659T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566753
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3826/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T A16453R G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566754
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C32A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C5812T C14408T G15575T C15924T A23403G G23587T C25665T G26620T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566758
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C38F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20356T A20742C C21952T A23403G G24781T G25311T C28087T C28310T GGG28881AAC A29521T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566761
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C442Y T1947C C3037T C7528T C14408T C18568T C18877T C22444T A23403G G25563T C26735T G27852T G28655K C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566762
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C38AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G160T C241T C1392T G2782T C3037T C10377T C14408T G15181T C18744T T19839C A23403G C25626T C26022T C27002T C28708T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566766
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C36A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C539T C3037T C6286T C14408T C15480T G21255C C21614T C22227T C23086Y A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566767
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3273/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T C1059T C2607T C3037T C4073A A8031G G11083T C14408T A14634G C18555T A23403G G24301A G25563T C27999T C28892T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566769
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C35B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A A6467C C9803T C10893Y G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566770
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C370B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6185Y T7767C C8047T G12988T C14408T G15598A G16206T C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25489T G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566779
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C34E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C14408T G17754T C18252T A23403G G28396A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566783
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4148/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C121T C241T T637C G805A C1221T G1914A C3037T C7840T G10318T C10733Y C14408T A20742C G22918T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566785
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C34C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566787
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C362C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26228T T26609C C26801G A27609C C28932T G29645T G29751T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566789
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3598/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C11747T C14408T C20178Y G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566790
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C347D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C5986T A6528G T7292C T8410C G9092A C10833T C11572T C13458T C14408T C16293T C18877T C22444T A23403G T23986C G25563T C26735T C26996T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566792
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3370/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566802
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6736Y C14408T A20742C C21637Y C21952T A23403G G24781T G25311T C28087T C28310T GGG28881AAC A29521T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566804
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3334/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28674T C28932T G29254T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566806
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C34D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566808
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C353E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A4627G C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566810
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C356B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566812
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C363B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T595C C3037T T4651C A8244G G8408A C8782T G12191T G12202T A14175R C14408T C19488T A23403G G25775T T26171A C28500T GGG28881AAC G29254A C29409T G29474T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566816
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C32CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18568T C18877T C22444T A23403G G25563T C26735T G27852T C28651A C28854T A29319T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566817
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3291/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T T3827C A5040G C7105T C14408T G15906T C17104T C20759T A23403G T25496C G25563T C26335T C27213T G28655A G28812C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566821
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C40C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28674T C28932T G29254T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566822
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3307/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566824
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5857A C11224T C11941T C12043T C12242T C14408T C18877T C22444T G22468T A23403G G24757T G25563T C26735T C28854T G29239T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566826
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C345F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C5986T A6528G T7292C T8410C G9092A C10833T C11572T C14408T C16293T C18877T C22444T T23296C A23403G T23986C G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566832
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C349B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C9430T C14408T A23403G C24502T G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566833
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C39BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5448C C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566834
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C38DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566840
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C33AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G G25250T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566842
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3668/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T G11083T C14408T C18568T C18877T C22444T A23403G G25563T C26735T G27852T C28854T G29392C C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566844
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C41C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C10336T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G T25202K G25563T C25710T C26735T T26876C A27403G G28851T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566845
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3659/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C245T C274T C313T C3037T G14126C C14408T G18255T G22801T A23403G C27998T G28077C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566848
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C41A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C2363T C3037T T3256C C5622T C6936T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566849
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C5986T A6528G T7292C T8410C G9092A C10833T C11572T C13458T C14408T C16293T C18877T C22444T A23403G T23986C G25563T C26735T C26996T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566851
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C361D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1063Y T1947C C3037T C7528T C14408T C18877T C22444T A23403G T25202K G25563T C26177T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566858
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174T C241T C3037T G3338T G4510T C6354T G9928T C14408T G19009T C22227T A23403G T24796C T25942C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566859
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C31A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C A27403G G28851T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566862
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C35F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C17746T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566867
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26177T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566868
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C39D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2537G C3037T C6573T C9246T C12043T G12191T C14408T T16479C T17007C C19951T A23403G G24926T G26690T C28651T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566872
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C399C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566881
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10449T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566886
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C346E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C9430T C14408T A23403G C24502T G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566888
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C371A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C A652R C3037T C6286T C14184T C14408T C15495M T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566898
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3950/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T G8137T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566899
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3404/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T C3037T C14408T C15755T T19839C G20006T A20010G G22132A A23403G C26111T G26116A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566903
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C39C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C850Y C3037T C6286T C6807T C7926T C9745T C14408T G21255C CG21304MR C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566910
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C36FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T T18827C C18877T C20823T G22992A A23403G G25563T C25710T C26735T T26876C T26957C G28109K G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566911
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C31FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G11557T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C G25606T C26313T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566914
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C364A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T C7390T C14408T C15324T A16044T G21295T C21855T A22252T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566915
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C34F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C449T C3037T C6286T C14408T G21255C C22227T G23311C A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566916
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C37FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566925
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3264/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T T26495C GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566933
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1077T C3037T C14408T C21575T A23403G G26918T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566937
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C357A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C11747T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566945
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3862/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1392T G2782T C3037T C10377T C14408T G15181T C18744T T19839C A23403G C25626T C26022T C27002T C28708T GGG28881AAC G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566947
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C3923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566950
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C39AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26177T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566953
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C35A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G20434A G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566957
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C37DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566959
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C397E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T A1305G C2143T C3037T C4234T C8818T C13554T C14408T C15738Y G17686T C17825T C18252T A23403G T26552C G28396A GGG28881AAC G29465T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566965
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C338F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566969
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C40F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566971
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C38EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G20356T A20742C C21952T A23403G G24781T G25311T C28087T C28310T GGG28881AAC A29521T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566972
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3844/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15342T C15981T G17616A T18488C C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566977
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C41B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T T18827C C18877T C20823T G22992A A23403G G25563T C25710T G26109T C26735T T26876C T26957C G28109T G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566992
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C352F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G T25202K C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566994
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3316/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T C6286T C8140T G11132T C14408T G21255C C22227T C23244T A23403G C26801G C27982T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566996
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C4236/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T C7081T G11132T C14408T G21255C C22227T A23403G G24197T G25987T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567015
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7DD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567022
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C80B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T G22471T T22896C A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567023
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C838A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567029
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8AFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C6781T C7528T C14408T C15981T C18877T C22444T C23114T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567047
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8C9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G11557T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C G25606T C26313T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567056
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7E11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C703T A1987G A2821G C3037T C3923Y C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567066
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7AE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567069
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7E5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A6081R C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567081
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8A2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T T13069G C14183T C14408T G16935T C18877T C22444T G22918T A23403G G25563T C26735T C28854T G29422T C29730T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567086
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7C53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G7936T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567087
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8C34/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T T11522G C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567094
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C7119T C14408T G21255C C22227T T23227C A23403G C26801G C27630Y C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567095
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C89A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G11557T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C G25606T C26313T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567096
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8FD1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T T13746C C14408T C17934A C21762T A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567100
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C88A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C6402Y C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567124
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8AEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T A29428G G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567137
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C88D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8806C A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567141
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8C43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T C3037T C3373A A6546G C6883T A11982T C14408T G14730A G21119A G21724A A23403G GGG28881AAC G28985T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567145
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8C16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T C19017T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567151
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7AD1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T G22017T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567169
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8C07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567171
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C889A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567175
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8A1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A A6375W G11083T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567178
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C17934A C21658T A23403G T24088C G25617T C25642T C27297T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567181
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7E20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567182
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C834E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T4303C T7783C C14408T A15984T C20946T C22075T A23403G C25169T GC25552TT C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567185
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/QEUH-9C7EB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10449T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567197
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C894C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567199
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567220
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C89E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7231T C8917T A9749G C10776A C11833T A13867C C14408T A15489G C16658T G17815A C19164T G21724T A23403G C23604A G25785T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567225
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7D9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G T26543C C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567233
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8BFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567238
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C842D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T T7292C T8410C G9092A C10833T C11572T C14408T C16293T C18877T T19713K C22444T A23403G T23986C G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567247
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C89B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567251
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7D7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C G2393A C3037T C7528T C10228T G12067T G12143T C14408T T17358Y C18877T G18985T G21867T C22444T A23403G G25563T G26452A C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567253
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C88C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567257
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567259
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T G12514T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567262
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C895B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T C25000T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567264
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8A67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C3037T C8683T C14408T G15406T C21637T G22992A A23403G T23689C A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567271
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567272
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA528/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C11224T G11230T G11401T C14408T A16550G A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567275
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C95FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T T10372C C14408T G15406T C21637T A23403G G23426T T25202K A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567276
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA652/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C12084T C14408T G21255C C22227T A23403G C26801G C27944T C28453Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567280
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9D6D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T C15738T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567281
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA704/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C G21468T C22227T A23403G C26060T C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567283
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C97AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C11747T C14408T G16795T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567284
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9477/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C478T C1513T C3037T C6286T C14408T C19145T G21255C C21627T C22227T G22346T C22377T A23403G C25831T G26268T C26801G G28378T C28932T G29645T G29757T C29774T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567285
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA3F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1344C C3037T A4291T C8683T C14408T G15406T C16260T C19862T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567286
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C950B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3398R C10954T G11230T G11350S G11401T C14408T G22992T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567288
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9617/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567290
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA1BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C10207T C14408T G21255C C22227T C23191T A23403G C26801G C27944T G28851T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567291
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9C06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T595C C3037T C3653T A8244G G8408A G12191T C14408T C19488T C21622T A23403G G24199T T26171A G27415T C28500T GGG28881AAC G29254A C29409T G29474T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567292
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9C7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567293
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/QEUH-9CA19D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567295
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9A39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567296
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C976F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567297
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9635/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T C15356T G15598A C17104T G17427A G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567299
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/QEUH-9C9820/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C G21334T C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567300
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G11557T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C G25606T C26313T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567301
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T G17944T C18877T G21867T C22444T A23403G G25135T G25563T C26735T C28854T G29468C C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567302
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9BFA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T C19017T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567303
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA810/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T G22992T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567304
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/QEUH-9CA485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567305
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T C17733Y A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567306
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C93D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T A17105G C19017T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567307
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA3D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A2647G C3037T T3256C G3638T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567308
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567309
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA986/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G C27527T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567310
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/QEUH-9C98D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567311
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9B27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567312
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA29A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567313
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9CCA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C6781T C7528T C14408T C15981T C18877T C22444T C23114T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567315
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA7AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A9196G A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29402T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567318
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9FC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567320
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9FB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C9967T C14408T G21255C C22227T A23403G C26801G G27651A C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567323
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9F76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T G11083T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567327
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C95CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T595C C3037T C3653T A8244G G8408A G12191T C14408T C19488T C21622T A23403G G24199T T26171A G27415T C28500T GGG28881AAC G29254A C29409T G29474T G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567328
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6094K G11230T G11401T G13624K C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567330
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9987/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567331
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9A48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C583T C882T C2003T C3037T G5155A C6990T C8290T G9526T G13348T C14408T A16566T T18603C C18877T C21575T A23403G G25563T C25710T C26735T G28903A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567332
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C943B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C16260T A17082G A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567334
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9723/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G19656K G21255C C22227T G22346T C22377T A23403G T25202K C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567335
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA722/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567336
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9495/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1317G C3037T C4002T G10097A C13536T C14408T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567339
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C934D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29017A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567340
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11008T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567341
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA93B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567344
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G C23625T T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567345
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9C33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567346
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C95DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C3157T G3328T G3496T G4006T C5170T C6286T G11132T C14408T G18105C G21255C C22227T A23403G C26801G G27967T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567348
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9C51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G T27245C A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567349
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G T25202K C26060T GGG28881AAC G29227T C29466T A29771G T29791Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567350
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA5FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G C22185T A23403G C23731T C25000T G25567A T26075C C28849G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567351
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C97C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567352
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9B36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T A20387G G21255C C21614T C22227T A23403G C24334T C26801G C27493T C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567356
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA027/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26228T T26609C C26801G A27609C C28932T G29645T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567359
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9CD9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G3004T C3037T C3602T C6941T C14408T C15324T A16044T G21295T C21855T A23403G T25202K A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567364
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C935C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C16260T A19960G C21637T A23403G T25202K A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567365
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA8B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T C15738T C20031T G21255C C22227T A23403G G25647T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567366
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA85C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106Y C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26228T G26426R T26609C C26801G A27609C C28932T G29645T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567368
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/QEUH-9CA0CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G611A C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567369
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9BEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2710T C3037T G4105T C4391A C9170T C11124T C14408T G14792T C15848T G19254T T19893C A23403G C25658T C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567370
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA8A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G17122T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567372
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9E3D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11224T C11941T C12043T C12242T C12784T C14408T G16846T C17274T C18877T C22444T A23403G G25563T C26735T G27505T C28854T A29735G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567373
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9732/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T G12070K C14408T G21255C A22206T C22227T A23403G G25049T G25062T C26801G C28657T C28932T G28960T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567376
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9714/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6706T C7926T C9745T T11522G C14408T G21255C C22227T A23403G G25595C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567377
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C95ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567378
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9C15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5392T C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G C27494T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567379
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9CBB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567380
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C993C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1590T C3037T A11120G C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567381
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G T24769C C25460T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567383
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T T13954C C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567384
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA740/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C11747T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567385
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C978D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567387
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA28B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567391
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA5EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C8152T G10097A C13536T C14408T T20484G C22185T A23403G C23731T C25000T G25567A T26075C C28849G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567393
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA7B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29402T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567394
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA94A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G G25407T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567397
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9E00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C21365T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567399
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA036/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567400
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9D8B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27800Y C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567401
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9BDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T C19017T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567402
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9DA9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567404
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9C24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8318A C10252T C10525T C13860T C14408T C18247Y C18348T C19017T A23403G C26461T T27299C C28163T GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567405
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C92E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9661Y G11230T C13329T C14408T C19688T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567407
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C984E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C27661T C28253T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567408
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C99C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T A11781G C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567410
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C986C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567412
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA0FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T C18377T A23403G T25202K C25207T G25565T C25665T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567413
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA0AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C527T A1163T C3037T T3256C C5622T C6638T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567414
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C93E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C27661T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567416
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C11224T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567417
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C6781T C7528T C14408T C15981T C18877T C22444T C23114T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567418
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C933E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567419
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA3E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567420
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C96F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567421
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA6E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16178T C16289T G18149T G19254T T19893C A23403G C25889T G27621T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567423
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9EE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T C22323T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567424
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9E5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2536T C3037T C6286T C14408T G17749T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567425
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9C60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T T19159G G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28346T G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567426
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA75F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T C7081T G11132T C14408T G21255C C22227T A23403G G25987T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567428
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA78C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T C10376T C11835T G12988T C14408T G15598A C17104T G18028T A20268G G20335A TACATG21765- G21800T C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567430
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA90E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C622T C3037T G4657T T5182C C11758T C12043T C14408T C15324T G16846T C16887T C21302T CG21304AA A23403G C25075T C25904T C28269T C29733T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567431
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9F2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C C25386T G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567434
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T T13560Y C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567436
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9BCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A739G C3037T C4543T C4698A G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C C27573T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567437
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9529/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C6665T T7767C C8047T G9856T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29294T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567438
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9DF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T C7081T G11132T C14408T G21255C C22227T A23403G G25987T T26609C C26801G A27609C C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567439
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA7E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T C18377T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567440
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9A84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567441
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA7C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567442
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C944A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567443
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C C22323Y A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567445
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C94A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G C17012T G17019T C18877T G22468T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567448
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9AFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T A15779G C21855T A23403G A25505G G25906C G25996T C27002T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567449
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9E4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204C C241T C1288T C3037T T3163C C4345T C9836T C12053T C14408T G22468T A23403G T25150C T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567450
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA5A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567451
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA995/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T C2416T C3037T G8303A G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567452
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA27C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567455
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C97F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T C25000T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567457
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA84D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22468T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567458
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567459
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C97D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T GGTCTT1598- C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G C27741T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567461
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9644/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C2710T C3037T T7767C C8047T A10978T C14408T C15026T A16641T C17104T G17551A C19317T A20268G T20799C C22879A A23403G C23625T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567462
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C988A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1025T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567467
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6285T T8806C A9433T G10265A C14408T G15380T A19650G G21255T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567468
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C98E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567469
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA670/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222Y C241T C3037T G11230T G11401T C14408T C15738T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567471
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA731/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567472
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9AEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T G18498T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567474
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA8F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T T11522G C14408T G21255C C22227T A23403G T25202K C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567475
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9EF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567477
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C99A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567478
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C94FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567479
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9E88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C16869T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29017A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567480
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA7D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22468T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567481
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9D4F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C T2319C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567483
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9574/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA G22661T A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567484
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29017A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567485
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA713/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567486
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9E1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T T16926C G21255C C22227T A23403G C26801G G27467C C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567488
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA5CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T C19572Y G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567490
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9969/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C556T C3037T G5150T C8293T C14408T C22264Y A23403G C25339T G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567492
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/QEUH-9C9B90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C23996T C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567493
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C98B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T C22227T A23403G C23525T C23991T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567495
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9BAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C4331T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567496
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA50A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567497
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C95A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T C14571T G19648T A20268G T21158C C22978T A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567498
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA801/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567499
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA0EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3053T C4002T G5950T G10097A C13536T C14408T G19732T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567500
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA063/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T G29402T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567502
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9398/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567507
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C98A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G11557T G12988T C14408T G14829K G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C G25606T C26313T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567508
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA82F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T G11083T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567509
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9ADF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C13536T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567513
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9BBE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26177T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567515
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA8D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567518
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C994B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T C22295T A23403G T25629C C26801G C27944T C28932T C29077T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567520
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C937A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A A2969G C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T T28098C G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567521
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C987B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C6781T C7528T C14408T C15981T C18877T C22444T C23114T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567523
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9FEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T C7303T C14408T A23403G T25202K G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567525
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA7F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C5575Y C11124T C14408T G14792T C15848T T16242C C16289T G18149T G19254T T19893C A23403G C25889T C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567526
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA1E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8318A C10252T C10525T C13860T C14408T C18348T C19017T A23403G C26461T T27299C C28163T GGG28881AAC T29148C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567528
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9F1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T181C C241T C3037T G3863A C8664T C12525T A13533G C14408T C18877T C21614T A23403G C25153T T25202K G25563T T25969G G26227T C26735T C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567529
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C98C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T G9479T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567530
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C96EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C11747T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567531
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9D7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G14874T G15766T A16889G G17019T T17685Y C18877T C22858Y G22992A A23403G C24109T G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567532
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA616/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G571A C3037T C4543T G5629T G9526T C11407T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567533
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C50FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567534
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T C6286T G11132T C14408T G21255C C22227T A23403G G26620T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567535
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C57FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C4012T C6286T C9745T C14408T G21255C C22227T A23403G C26801G G27147T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567536
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5B76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2676T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567537
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C597C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T T6989C C7926T C9745T C14408T G21255C C22227T A23403G C23625T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567538
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C54B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A1386G C3037T T3256C C5622T G11083T C11345T G14202T C14408T G16549A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567539
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5D9E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567542
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5E5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567543
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C55E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567544
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C60FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567545
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C51B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T A12649T C14408T G17608R G21255C C22227T A23403G T25248C C26801G C27389T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567547
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5BFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C C11460T G12067T C14408T C21575T C21637T C22050T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567548
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4C29/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567549
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C52DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T A20599C G21255C C22227T A23403G C25207T C26801G C27944T G28371T C28932T G29645T C29733Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567550
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C52F9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C16859T C21637T C22550T A23403G A28169G GGG28881AAC G29688T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567553
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C560C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G C25796M A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567554
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4EAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C16260T C16323T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567555
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C637D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T G7954T C14408T T17208C A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567556
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C561B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T A10978T T13270C C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567557
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4E23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C16260T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567558
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C50C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G C26801S A27609M GGG28881RRC C29518Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567559
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C56C0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567560
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5F2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G G19101K C21998T A23403G C23731T C27513T GGG28881AAC TC28889CT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567561
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5C19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1935C C3037T T5507A C7165T C8950T C10138T C12525T C14408T G19648T A20268G T21158C C23320T A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567562
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5BA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C21575T C22227T A23403G A23947G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567564
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4E7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G3476A G4665A G9802T G12067T C13667T C14408T G15957T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567565
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5E8C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26139T C26801G C28310A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567566
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5675/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C367T C3037T C8352T A10260G A10880G C14408T G16197T A23403G C24382T G24794T C25513T C25844T C26601T A26743C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567568
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G19056T G21800T A23403G G25563T G27632T C27804T C28744T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567569
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/ALDP-9C5156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567571
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C63AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T G7954T C14408T T17208C A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567572
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C538D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T G21255C C22227T A23403G T25248C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567573
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5BC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T C14645T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567575
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C562A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C11074T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567576
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5341/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T C17573T G18859T G21624T A23403G C26571A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567580
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4D44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1101T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567581
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5F01/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G15768T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567582
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5DDA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C367T C3037T C8352T A10260G A10880G C14408T G16197T A23403G C24034T C24382T G24794T C25513T C26601T A26743C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567583
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C51A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C367T C3037T C8352T A10260G A10880G C14408T G16197T A23403G C24382T G24794T C25513T C25844T C26601T A26743C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567584
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5D52/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7765Y T7767C C8047T G9856T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567585
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C53F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567586
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C54A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567587
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C50D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567589
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4F4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567590
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C500E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G5012T G8353A T9289C G10097A C12242T C13536T C14408T T14418C C22326T A23403G C23731T G24781T G25681C C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567591
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C639B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T G7954T C14408T T17208C A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567592
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C53E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C2523T C3037T G3994A C5730T C9924T G11083T C11109T C14408T C18877T TAT22189- C22444T A23403G C24138A G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567593
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C51DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T A13869R C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567595
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5CCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567596
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5684/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21627T C21637T C22227T G23282T A23403G C23525T C26111Y A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567597
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C16260T A19960G C21178Y C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567598
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4F5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T T1947C T2901C C3037T C7528T G12943R C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567599
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5C0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567600
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5781/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567601
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C55D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567602
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C53C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T TTA516- G1464A C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567604
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5E31/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T A3075G C14408T A22155G A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567605
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567606
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5EF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567607
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4F20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC G29254T CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567611
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T A10978T C14120T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567612
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5E22/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C835T C3037T A3075G C14408T A22155G A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567613
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C55C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6439A C8092T C8683T C13170T C14408T G15406T C16393Y C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567616
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C56EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567617
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4D62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C2523T C3037T G3994A C5730T C9924T G11083T C11109T C14408T C18877T TAT22189- C22444T A23403G C24138A G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567618
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5BEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18683T C18877T G21867T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567619
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C12880Y C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567620
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C6191/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T T13954C C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567621
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5B94/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567622
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C536F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29525T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567623
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C6076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567624
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4C65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567625
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C52CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T A20599C G21255C C22227T A23403G C25207T C26801G C27944T G28371T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567626
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C6401/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C C20806T A23403G C25889T G27621T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567627
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T809C C829T C1960T C3037T C5301T C5907T C13247T C14408T C14937T T18144C C19977A A23403G C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567628
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4E8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567629
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4E50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567630
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5D07/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T403C C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567631
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5E13/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1659T C3037T C3884T T7341C C8290T C14408T C18877T C20199T C20233T G20305T A23403G G25563T C26139T C26735T T27634C G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567632
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4F11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26177T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567633
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C57BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A4648R C6286T C14408T C14790T G21255C C21614T C22227T A23403G C24334T G24608A C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567634
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4EE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T G11083T C14408T C15324T A16044T G21307A C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567635
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5DCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C15738T C17012T T18750C T20571C C21639T A23403G C23731T C26873Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567636
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C610A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T G27602T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567638
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C63F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567639
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5FB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567641
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5E40/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T A11781G C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567642
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C6410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2509T T2537G C3037T C6573T A6659G G12191T G13249T C13261T C14408T T16479C A23403G G28541T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567643
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C50A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567644
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5AE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C10369T C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567646
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2798T C3037T T9115A G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567647
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5CA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C3157T G3328T G4006T C5170T C6286T G8083T G11132T C14408T G18105C G21255C C22227T A23403G C26801G G27967T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567648
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C504A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567650
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5D8F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567651
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567652
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C51FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567653
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4E41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567654
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5BB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4904K C6286T C14408T G21255C C22227T A23403G C26801G C28310A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567655
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5C64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567656
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5693/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C367T C3037T C8352T A10260G A10880G C14408T G16197T A23403G C24382T G24794T C25513T C25844T C26601T A26743C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567657
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C52BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C11074T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567658
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C529F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1935C C3037T T5507A C7165T C8950T C10138T C12525T C14408T G19648T A20268G T21158C C23320T A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567659
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C502C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C C20806T A23403G C25889T G27621T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567660
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5D61/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7113T C9803T G11083T C12493A T14100C C14408T C16349T A20268G T20988C C21614T G21778A A23403G G25290T C28846T C28854T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567661
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C51CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567662
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5EAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28310A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567664
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4B2C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C346T C3037T C5575T G11447A C14408T C21648T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567665
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C628F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T T23377C A23403G A23974T C24370T G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567666
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4D26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2013T G2659T C3037T G13451A C14408T C21306T G23401T A23403G G25598T G28003T C28236T GGG28881AAC C29358T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567669
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4F8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T G27621T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567670
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5F3E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1162G C1758T C2146T C2695T C3037T C4002T C4965T G10097A G11335T A11782G A13277C C13536T A13873C C14408T C19374T A23403G C23731T G28376T G28378T GGG28881AAC C29095Y G29781T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567671
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5C82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7240C C8683T C12084T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567672
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C55F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567673
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C53AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G25526T A28169G C28310T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567674
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4D08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2648T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567676
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C54F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567678
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C6085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T C21897Y A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567679
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C546C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C12249T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567680
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5F89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A A2969G C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567682
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5DF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9096T A11923G C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T C27002T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567683
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4FA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567685
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C59B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T C9246T C10279T C10301A C10525T C10582T G10688T G11851T C14230A C14408T G21800T A23403G G25563T G27632T C27804T C28830A G29402T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567686
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C551E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567688
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C511A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C157Y C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A G22331R A23403G C23625T C25714Y A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567689
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C61EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567691
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5192/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C367T C3037T C8352T A10260G A10880G C14408T G16197T A23403G C24382T G24794T C25513T C25844T C26601T A26743C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567693
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4E32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC C29375T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567694
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C537E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567696
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5912/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567697
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4C83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C19868A C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567700
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5B85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567701
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5C73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T G21867T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567702
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4DCC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7240C C8683T C12084T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567703
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C503B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2941G C3037T T3710G C5654T C6033T C14408T G18703T G22468T A23403G G24193T T24763C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567704
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5D70/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9096T A11923G C14408T C16915T C18877T G21204T C21846Y A23403G T24202C G25563T C26735T G28899T G29692T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567705
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C367T G370T C1059T C3037T C3602T C8208T C14318T C14408T CC16375TT T17589C T18132A C19903T C21767T A23403G G25563T C25585T C26060T T26765A T27384C C28344T G29755C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567706
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C602B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C10474T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567707
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5CBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567708
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C635F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T T13954C C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567709
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C50B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567710
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4FE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C19868A C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567712
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C59F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C14408T C21575T C21637T C22227T A23403G C23525T C23991T A28169G G28580T GGG28881AAC G28907T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567714
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5F4D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC TC28889CT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567716
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5F10/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC TC28889CT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567717
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5CDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T A13928G C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567719
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C544E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C12249T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567721
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5FE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2028T C3037T C3369T G5230T C5301T C6573T C14408T G16207T G16912T C21575T A23403G T23689C G25112T G25681C C27884T G28396A C28849T GGG28881AAC A29549T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567722
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C622Y C904Y C3037T G4657K T5182Y C8683Y C11758Y C12043Y C14408T C15324Y G15406T G16846K C16887Y C21637Y A23403G G23426K C25075Y C25904Y A28169R C28269Y GGG28881RRS C29095Y C29733Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567723
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C6313/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567724
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567725
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4DDB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567726
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5B49/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567727
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4FD5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C1710T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567728
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5B0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C10369T C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T C28313T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567729
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5ED7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C2919Y C3037T C6286T C14408T G21255C C21614T C22227T C23277T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567731
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5C28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1935C C3037T T5507A C7165T C8950T C10138T C12525T C14408T G19648T A20268G T21158C C23320T A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567732
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4DAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10885C G11230T C14408T A23403G T24088C G25617T C27494T G28655A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567733
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C6331/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G C25700T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567734
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5745/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15342T C15981T T18488C C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567735
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C6067/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C14790T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567740
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C59C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T C19017T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567741
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C543F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10894Y C11396T C11747T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567742
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5E7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T C6310Y G10870T A11781G C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567743
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C56FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A9196G A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29402T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567745
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5305/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1401A T1947C C3037T T4779C C6402T A10883G G13812A C13989T C14408T A18702G C18877T C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567746
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C553C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C1884Y C3037T C6286T C14408T A15779G C21855T A23403G T24091C A25505G G25906C G25996T C27002T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567747
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4DF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567748
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C601C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T G27602T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567750
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C52EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567751
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC C29118T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567753
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C510B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T G11083K C13009T C14408T G18462T G21255C C22227T G22346T A23403G C26801G G28321A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567754
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C6094/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26177T C26735T A27736T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567756
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C6270/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1142T C3037T C6286T C6807T C7926T C9745T C14408T G21255C G22014T C22227T A23403G C25831T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567757
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5CEC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C7231T C7279T C14408T C21575T C21637T A23403G C23525T A28169G G28655T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567758
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5C55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1892A T1947C C3037T T3919C C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567760
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4EF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T A10616M G11083T G14202T C14408T G19542T C19718T C22388T A23403G G25135T C25703Y C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567761
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4C56/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C5646T C6286T C8950T G9805T C14408T A16704G C17288T G19272T G21255C C22227T A23403G T25248C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567763
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2648K C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567764
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C547B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C4059T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567766
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C6182/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567768
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C6058/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567769
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4F3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C6040T C9891T C10369T C14120T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567770
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5F6B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T G4510T C5079T C7528T C14408T C15981T C18877T C22444T A23403G G25563T G26428T C26735T TTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCA27581- C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567771
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5280/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G370T C1059T C3037T C3602T C8208T C14318T C14408T CC16375TT T17589C T18132A C19903T C21767T A23403G G25563T C25585T C26060T T26765A T27384C C28253T C28344T G29755C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567772
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4EC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567773
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C52AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T T12182Y C14408T T16926C G21255C C22227T A23403G C26801G G27467C C27944T C28253Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567774
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635Y C3037T C8683T C14408T G15406T C16260T A19960G C21637T A23403G G25793T A28169G C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567775
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5D25/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7113T C9803T G11083T C12493A T14100C C14408T C16349T A20268G T20988C C21614T G21778A A23403G G25290T C28846T C28854T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567776
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C603A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C14790T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567777
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C550F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29017A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567778
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4F99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567779
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C636E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1346A T1947C C3037T G4232T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567780
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4E05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T C14408T A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567781
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4DEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7240C C8683T C12084T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567783
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C594F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C16260T C16323Y A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567784
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C61CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G26501T G27798T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567785
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C6207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C8917T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G28376A C28453T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567786
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C55A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A1989G C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567788
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5C91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C19185T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567791
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C57EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T T11522G C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567792
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/ALDP-9C5138/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C G21800T A22053C C22227T G22346T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567793
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C6322/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567794
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567795
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C56DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567796
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3874T A8032G G11230T T11440C C14408T G23401T A23403G T24088C G25500A G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567797
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5402/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C2523T C3037T G3994A C5730T C9924T G11083T C11109T C14408T C18877T TAT22189- C22444T A23403G C24138A G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567798
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5CFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T G12514T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567799
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C548A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C11379T C14408T T18083C T20661C G21255C C22227T A23403G C26801G C27903T C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567800
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5569/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T C19017T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567801
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C53D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567802
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T C6286T G11132T C14408T G21255C C22227T A23403G G26620T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567805
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5BD0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6258T C6286T C14408T G21255C C22227T A23403G C26801G C28310A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567807
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5095/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8064T G13348T C14408T C15240T C21627T A23403G GGG28881AAC G28903T G28975T C29073T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567808
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Wales/ALDP-9C5EE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C G21800T A22053C C22227T G22346T A23403G C26801G C28932T G28960T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567809
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5323/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1401A T1947C C3037T T4779C C6402T A10883G G13812A C13989T C14408T A18702G C18877T C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567810
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5DAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T G21867T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567813
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4F6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T G4960T C6286T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567814
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C501D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C106T C241T C3037T C8683T C14408T G15406T C16887T C21637T G22992A A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567815
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C61BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567816
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5DBC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C15738T C17012T T18750C T20571C C21639T A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567817
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C54D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C7834T C14120T C14408T T20661C G21255C C22227T A23403G C26801G C28011T C28932T C29366T C29386T G29508T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567818
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5F7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A1386G C3037T T3256C C5622T G10870T G11083T C11345T G14202T C14408T G16549A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567819
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5D16/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A C5956T C7231T C7279T C14408T C21575T C21637T A23403G C23525T A28169G G28655T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567821
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5C46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6762T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T C25000T A27726M G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567822
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C638C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T A2576T C3037T C5175T C6401T G7954T C14408T T17208C A23403G C25096T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567823
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5FC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567824
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C595E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C11747T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567826
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5E04/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T T1947C T2901C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T T28693Y C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567827
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4E9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A1989G C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567828
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5411/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T T9600Y G10265A C14408T G15380T C16887T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567829
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C642F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C12084T C14408T G15406T C21637T A23403G C25046T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567832
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C3425T C6286T C12119T C14408T C19763Y A21222T G21255C C22227T A23403G C25889T C26238Y C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567834
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4F02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A C20844Y A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567835
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4DBD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567836
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C545D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5170T C6286T G11132T C14408T G21255C C22227T A23403G G26620T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567837
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C367T G370T C1059T C3037T C3602T C8208T C14318T C14408T CC16375TT T17589C T18132A C19903T C21767T A23403G G25563T C25585T C26060T T26765A T27384C C28344T G29755C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567839
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4C38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567840
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C51ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C21910Y C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567842
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4E14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567843
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5314/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1401A T1947C C3037T T4779C C6402T A10883G G13812A C13989T C14408T A18702G C18877T C22444T A23403G G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567844
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5930/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7240C C8683T C12084T C14408T G15406T C21637T A23403G A28169G C28728T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567846
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T A14788G G18782T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T G29468T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567847
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5332/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T G22992T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567848
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5A00/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2509T T2537G C3037T C6573T A6659G G12191T G13249T C13261T C14408T T16479C A23403G G28541T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567849
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4E6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T C19017T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567850
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4ED8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2062T G2648T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567851
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C552D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567852
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4D9F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7240C C8683T C12084T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567853
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C57DC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567854
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4D17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2035T C2523T C3037T G3994A C5730T C9924T G11083T C11109T C14408T C18877T TAT22189- C22444T A23403G C24138A G25563T C26735T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567855
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5068/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2745G C3037T G4105T C4391A C11124T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G G23593T A25725G C25889T T28723C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567856
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5727/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C4999T C6286T A11533G C14408T G21255C C21614T C22227T A23403G C24334T T26424C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567857
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5DE9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T G3065T C7113T C7528T C14408T C18877T C22444T A23403G G25563T C26735T G27602T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567858
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4F7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567860
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5183/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5942A G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567863
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C63E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C16260T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567864
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C56B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567865
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C4901Y C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567866
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4D35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T A10978T C14408T C16469T C17104T G18803T A20268G T20799C G21088T C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567867
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C6049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C14790T G21255C C21614T C22227T A23403G C24334T C26801G C27944T G28198T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567868
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C57CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567869
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C599A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2040Y C3037T C8683T C14408T G15406T C16260T C16323T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567870
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5D43/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G8807T G10870T C14408T G21255C C22227T A23403G G25244T C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567871
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5EC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G8021K A11533G C14408T C18582Y G21255C C21614T C22227T A23403G C24334T T26424C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567872
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T A26760T C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567873
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C61FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567875
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C539C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567876
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4FF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G11083T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567877
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C50E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T C26256T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567878
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5C37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A1386G C3037T T3256C C5622T G11083T C11345T G14202T C14408T G16549A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567879
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9195T C14408T C22526T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567880
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5EB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567882
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C54E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567883
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5FD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C2028T C3037T C3369T G5230T C5301T C6573T C14408T G16207T G16912T C21575T A23403G T23689C G25112T G25681C C27884T G28396A C28849T GGG28881AAC A29549T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567884
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C59D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2648T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567885
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C555A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T T1651Y C3037T G9802T G12067T C13667T C14408T G15957T C19017T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567893
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE554/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567898
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE34B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567899
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE5FA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567904
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDE4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567905
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEAA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567908
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEACE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2421G C2574T C3037T C8683T C14408T G15406T C21618T C21637T A23403G C26607T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567912
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDFA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567916
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567922
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDA92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567923
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDFDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G11083T C11396T T11940C C14408T T17781C G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567925
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567926
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEBAD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567930
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE2E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C4331T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567934
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BED7A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567935
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE33C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567941
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE527/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G C23551T T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567948
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDB71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567952
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDF93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C5646T C6286T C8950T G9805T C14408T C17288T G19272T G21255C C22227T A23403G T25248C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567955
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDE78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G T25488A GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567956
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BECD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T C16111T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567959
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567966
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE4DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567971
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE3B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567973
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE42A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567976
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE30F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C3096Y C6286T C14408T C15857Y G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567978
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEDE3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G7037T G9130T C14408T T20973A A23403G T27319C G28487A C28868T GGG28881AAC G28980T G29212T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567979
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDB53/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567980
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDE3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567983
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEDA7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T C19186T G21255C A21526R C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567984
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BECC8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2005T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567992
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE3F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567999
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC79C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1267T A1317G C3037T C4002T G10097A G11083T C13164T C13536T A14010G C14408T C22594T A23403G C23731T G28179T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568000
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE536/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568004
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BED89/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C10969T C14408T G15406T G16206T C21637T G21761T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568011
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE40C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29402T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568018
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEA0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568020
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEDD4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4890T T5507A C9803T G11083T T14100C C14408T A20268G C21614T A23403G C28093A C28846T C28854T C29167T G29195T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568023
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BECAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2005T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568024
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDE96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T C20480T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568029
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE572/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G C23551T T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568037
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE5EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T C22281Y A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568040
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE5CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G11230T G11401T C14408T C15279T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568043
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEC7D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T A20599C G21255C C22227T A23403G C25207T C26801G C27944T G28371T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568048
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDE69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568052
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BED2F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1590T C3037T A11120G C14358Y C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568054
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDB26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568055
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C11747T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568057
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE3D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568059
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDF75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T T25651Y G26439T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568060
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE581/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1366G C3037T C3117T G11230T C14408T G21123T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568064
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDED2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T C3037T A7240C C8683T C12084T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568072
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDFC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C5646T C6286T C8950T G9805T C14408T C17288T G19272T G21255C C22227T A23403G T25248C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568073
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEDB6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8137T G11230T G11401T C14408T C20844T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568074
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE387/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568075
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDADE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T168C C241T C3037T A13308G C14408T C19602T T20508Y A23403G G25785T T27428C G27877T G28487C GGG28881AAC G28899A C29364T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568077
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDFEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568080
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE4FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T A11781G C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568083
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEDC5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G3013T C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C23625T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568088
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE31E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26313Y C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568089
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDF66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568093
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE9D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T G29254A C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568094
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE369/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C10931T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568095
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDEC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6720T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568097
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE396/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568098
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDEB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C8660T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568102
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDA83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T168C C241T C3037T A13308G C14408T C19602T A23403G G25785T T27428C G27877T G28487C GGG28881AAC G28899A C29364T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568124
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BECB9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G C3037T C6286T C14408T T14721C G21255C C22227T C23029T A23403G T25519G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568127
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE5BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T G29402T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568131
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDB44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568136
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEC9B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A9852G G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568142
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDF0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T T8110C G12988T C14408T G15598A C16394T C17104T G18028T A20268G TACATG21765- C22127T C22879A A23403G G23876A T24910C G25947T T26972C C27800A C29274T CAC29722TTTA G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568143
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE3E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1170T C3037T CC6285TT C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29392T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568144
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE9FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T C17733T T20661C G21255C C22227T A23403G C25584Y C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568147
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDA74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T C8655T C12242T C14408T G15380T C15933Y C21637T C22550T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568148
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BECE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T C21897T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568151
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE35A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T G6922K C14408T G21255C C21767Y C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568153
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDB62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1590T C3037T A11120G C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568155
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE378/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C17958T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568159
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BC78D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G G27382K C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568164
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEA19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T G29254A C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568187
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEA55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568191
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDAA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568194
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDAB0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T C16887T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568197
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T A11781G C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T G29744K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568202
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE3A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568210
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDB35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568212
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BEA64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T T13954C C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568214
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDEE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568215
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C3425T C6286T C12119T C14408T T18607Y A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568216
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE3C3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A6900G C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568217
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BE2C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568220
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9BDF2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T C2416T C3037T G8303A G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568226
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B86DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C679T C3037T C6286T C7093T A7455G C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568227
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8657/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T A5877G G10396T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568231
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B86FD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G599A C3037T C5884T C14408T A23403G G25621A C26060T C27603T GGG28881AAC T29758G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568235
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B82BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568237
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B82AE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T C16536T G21255C C21614T C22227T A23403G C24240T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568238
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B87CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568242
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G T24769C C25460T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568246
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8709/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568247
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B86B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1610G C3037T C3156T C9344T C13335T C14408T A19437G G19816T C22000T A22053G A23403G G24535T T24892C C28887T G29254T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568249
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B82CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G872A C3037T C6286T C7600T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568250
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B84C6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568255
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G8618A C11396T C11747T C14408T G21255C C21614T C22227T A23403G G25947T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568257
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B85E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568262
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B82DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G14209T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568263
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8235/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C11747T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568265
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8217/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568266
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568268
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8736/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568269
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B86EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G11557T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C G25606T C26313T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568270
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B84B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T C1170T C3037T C4002T G4444T C6347T C8152T G10097A C13536T C14408T T20484G A23403G C23731T C25000T G25567A C28849G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568271
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B85D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568273
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B84F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T C16376T G21255C C22227T A23403G G25855T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568275
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B84D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2706T C3037T C4084T C14408T A20268G A23403G C25731T C28833T C29247T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568277
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8718/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C10449T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568278
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8262/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568286
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B860C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T G14055T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568287
 2020-09-10 2020-10-01
 United Kingdom hCoV-19/Scotland/QEUH-9B8271/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28603T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568658
 2020-09-10 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1560/2020
 A1- C241T C1059T C2003T C3037T C10319T C14408T A18424G C21304T A23403G C25276T G25563T G25907T C27686T C27964T C28472T C28869T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_568661
 2020-09-10 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1563/2020
 AT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C22594A A23403G G25563T G25907T C27964T C28472T C28869T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_568662
 2020-09-10 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1564/2020
 AT1- C21T C241T C1059T C3037T C3369T C5583T G8017T C14408T C16260T G23126T A23403G G25563T G28134A C28290T C28821A GAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29862-

EPI_ISL_569220
 2020-09-10 2020-10-02
 France hCoV-19/France/IHU-1591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T T4387C C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C21575T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569231
 2020-09-10 2020-10-02
 France hCoV-19/France/IHU-1622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C3602T C6941T C7417T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569232
 2020-09-10 2020-10-02
 France hCoV-19/France/IHU-1623/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C222T C241T C503T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T G26720T C26735T T26876C T27652C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569233
 2020-09-10 2020-10-02
 France hCoV-19/France/IHU-1624/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T GGTCTT1598- C3037T C4543T G5629T G9526T C11497T G13993T C14408T C14838T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28086T G28975C C29311T G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569234
 2020-09-10 2020-10-02
 France hCoV-19/France/IHU-1625/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T445C C3037T G4006T C5170T G5504A C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T G29645T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569235
 2020-09-10 2020-10-02
 France hCoV-19/France/IHU-1626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C1059T C3037T C3099T G4960T C4965T C6070T C7303T C7564T T8743C C9246T A9634G C10279T C10301A C10525T C10582T G10688T G11851T C12778T C14230A C14408T G16377T G16647A G21800T A23403G G25563T G26690T G27632T C27804T C28830A G29402T G29779T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569236
 2020-09-10 2020-10-02
 France hCoV-19/France/IHU-1627/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C5055T G11851T A12755G C14408T A23403G G24812T C26895T GGG28881AAC C28887T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_536656 MW035454
 2020-09-11 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T G6166A G6352A A7837C C14408T G19677T A23403G C27276T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540704
 2020-09-11 2020-09-21
 United Kingdom hCoV-19/England/NOTT-113160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C8917T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23557T C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540705
 2020-09-11 2020-09-21
 United Kingdom hCoV-19/England/NOTT-11317F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T G29254A C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540706
 2020-09-11 2020-09-21
 United Kingdom hCoV-19/England/NOTT-11318E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T T1771A C1912T C2306T C3037T A3210G G4105T G4180T T10453C C11195T C14408T C16610T T16993C C21727T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540708
 2020-09-11 2020-09-21
 United Kingdom hCoV-19/England/NOTT-1131CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T G29737A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540889
 2020-09-11 2020-09-21
 United Kingdom hCoV-19/Scotland/EDB7752/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541551 MW030985
 2020-09-11 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T G6793T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541554 MW030988
 2020-09-11 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1421/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T C13176T T14191C C14408T C15654T C16092T C16260T A23403G G23900C A24253T G25563T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541555 MW030989
 2020-09-11 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1422/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G2407A C3037T C3885T A10323G C13957T C14408T T15276A C21575T T22162C A23403G A24010G G25563T G28842T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541559 MW030993
 2020-09-11 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1426/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C10319T C14408T C14805T A18424G C21304T A23403G G25563T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541560 MW030994
 2020-09-11 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541562 MW030996
 2020-09-11 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C1427T C3037T G3871T T3931C C14408T C19524T C20429T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541564 MW030998
 2020-09-11 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T G370T C1059T C2607T C3037T C14408T A14634G C18555T A23403G G25563T C28892T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541566 MW031000
 2020-09-11 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541582 MW031017
 2020-09-11 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1450/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1942T G2305T C3037T G8083A A9085G C10319T T12349C C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541588 MW031023
 2020-09-11 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1456/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T G6166A G6352A A7837C C14408T G19677T A23403G C27276T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541592 MW031027
 2020-09-11 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1460/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C A2269T C3037T G3871T T3931C C6285T C11747T C14408T C19524T C20429T C21575T A23403G C25513T C28977T C29719T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541602 MW031037
 2020-09-11 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1470/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3141T C3773T C4596A C7086T G11417T T14191C C14408T G15672T C16092T C16260T G17721T G18985T G23126T C23185T A23403G G23900C A24253T C25460T G25563T C26801T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541604 MW031039
 2020-09-11 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1472/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541626 MW031066
 2020-09-11 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1499/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T A26148G C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547835
 2020-09-11 2020-09-24
 United States hCoV-19/USA/WI-GMF-19668/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19872T C21304T A23403G G25563T G25907T C27964T C28472T C28869T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547837
 2020-09-11 2020-09-24
 United States hCoV-19/USA/WI-GMF-19708/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T A696C C3037T G3871T T3931C C4226T C5672T C6990T A7837C C14408T G19677T A23403G G25947T C27998T C28977T G29744T GGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29861-

EPI_ISL_547838
 2020-09-11 2020-09-24
 United States hCoV-19/USA/WI-GMF-19709/2020
 ATTA1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28869T G29402T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547839
 2020-09-11 2020-09-24
 United States hCoV-19/USA/WI-GMF-19714/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C4719T G6609T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547840
 2020-09-11 2020-09-24
 United States hCoV-19/USA/WI-GMF-19716/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T C4719T G8083A G8372A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28869T G29402T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547842
 2020-09-11 2020-09-24
 United States hCoV-19/USA/WI-GMF-19732/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C203T C241T C1059T G1439T C2607T C3037T C14408T A14634G C15752T C18555T C22432T A23403G G25563T C28892T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547843
 2020-09-11 2020-09-24
 United States hCoV-19/USA/WI-GMF-19743/2020
 ATTAAAGGTTTATACCTTC1- C241T A831G T1562C G2035T C3037T A3262G T3745C C11674T C11956T C12025T C14408T C18263T T19839C A23403G C23707T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547844
 2020-09-11 2020-09-24
 United States hCoV-19/USA/WI-GMF-19745/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A696C C1427T C3037T G3871T T3931C C6285T C14408T C19524T C20429T A23403G C28977T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547845
 2020-09-11 2020-09-24
 United States hCoV-19/USA/WI-GMF-19746/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C203T C241T C1059T G1439T C2607T C3037T C14408T A14634G C15752T C18555T C22432T A23403G G25563T C28892T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547846
 2020-09-11 2020-09-24
 United States hCoV-19/USA/WI-GMF-19787/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1288T C3037T C11050T C13426T C14408T C14937T G21893A C22783T A23403G C24904T T27597C T28149C GGG28881AAC A29056G AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548082
 2020-09-11 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2815C C3037T C4002T G6352T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29777-

EPI_ISL_549519
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/England/NOTT-113661/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G127T C241T C2536T C3037T C14408T G15438T G21867T A23403G C25207T C25665T T26160C C26894T G26918T C28453T C28708T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549520
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/England/NOTT-11369E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559916
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/England/SHEF-C714E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559943
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/England/SHEF-D1EFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T C12400T C14408T G21255C C21762T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559946
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/England/SHEF-D2B33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560089
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A6C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28603Y C28932T G29645T

EPI_ISL_560101
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A786/2020
 AT1- G204T C241T T445C G1999T C3037T C6286T G11083T T11577C C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560106
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A7D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC

EPI_ISL_560116
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A883/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T G11083T T11577C C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560118
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A8A1/2020
 ATTA1- C241T G1464A C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C

EPI_ISL_560136
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A9DB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G A27472G C27944T C28932T G29645T

EPI_ISL_560141
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AA23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C5944Y G9802T G12067T C14408T A21137G A23403G GGG28881AAC

EPI_ISL_560142
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AA32/2020
 ATTA1- G204T C241T T445C T511C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T A28792T C28932T G29645T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_560146
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AA7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560148
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AA9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C11396T C14408T C16178T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T

EPI_ISL_560152
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AAD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560161
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AB6C/2020
 ATTAAAGGTTT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C G21334T C21614T C22227T A23403G C26801G C27944T C28932T G29645T AAAAAAAAAAAAAAAAAAAAAAAAAAAAA29875-

EPI_ISL_560167
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ABC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_560180
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AC96/2020
 ATTAAAGGTTTA1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_560181
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ACA5/2020
 ATTAAAGGTTTATACC1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560186
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ACF0/2020
 ATTAAAGGTT1- G204T C241T T445C C3037T C6286T G11083T T11577C C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T A29903-

EPI_ISL_560203
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AE09/2020
 ATTAAAGGTTTATACCT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560210
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AE72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28253T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_560213
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AEAF/2020
 ATTA1- C241T C3037T C8683T C14408T G15406T C20104T C21637T A23403G A28169G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_560220
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AF15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G A27472G C27944T C28932T G29645T AAAA29900-

EPI_ISL_560222
 2020-09-11 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AF33/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C T511C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T A28792T C28932T G29645T

EPI_ISL_562594
 2020-09-11 2020-09-30
 Australia hCoV-19/Australia/VIC12847/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G6485A T7540C C14408T C16222T G16647T A17337G C18555T C22858T G22992A G23401A A23403G C24034T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_562724
 2020-09-11 2020-09-30
 Australia hCoV-19/Australia/VIC12457/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563517
 2020-09-11 2020-09-30
 Australia hCoV-19/Australia/VIC12077/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T13438Y C14408T G16647T C18555T C18568T G21641K G22992A G23401A A23403G C23625T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563519
 2020-09-11 2020-09-30
 Australia hCoV-19/Australia/VIC12084/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6395Y T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563521
 2020-09-11 2020-09-30
 Australia hCoV-19/Australia/VIC12088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T C16394Y G16647T C18555T T21925C C22329Y G22992A G23401A A23403G A26759T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563535
 2020-09-11 2020-09-30
 Australia hCoV-19/Australia/VIC12181/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6395T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563538
 2020-09-11 2020-09-30
 Australia hCoV-19/Australia/VIC12207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6395T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563543
 2020-09-11 2020-09-30
 Australia hCoV-19/Australia/VIC12226/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C6395T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563582
 2020-09-11 2020-09-30
 Australia hCoV-19/Australia/VIC12715/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563597
 2020-09-11 2020-09-30
 Australia hCoV-19/Australia/VIC12809/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C5392T G7016K T7540C C9073T T10717C C14408T G16647T C16915T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563865
 2020-09-11 2020-09-30
 Australia hCoV-19/Australia/VIC13889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T C7471T T7540C C14362Y C14408T G16647T A17337G G17721T C18555T G22992A C23191T G23401A A23403G C25000Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563869
 2020-09-11 2020-09-30
 Australia hCoV-19/Australia/VIC13895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566421
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C20C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T G22205C C22227T A23403G C26801G C27881A C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566430
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C21A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T G4232T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566431
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2308/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A21137G A21366G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566446
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C210E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G5023T C6286T C14408T G21255C C22227T A23403G C25047G T25202K C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566448
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C22A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C10626T C14408T G21255C C22227T G23311C A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566507
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3152A G4255A G4510T C5884T C6983T C11308T C13019T C14408T A22155G A23403G C28409Y GGG28881AAC C29353T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566517
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T505C G872T C3037T C3261T T7783C C14408T A15984T C20946T C22075T A23403G G25552T C27945T G28221T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566527
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T G10870T C14408T C15324T A23403G C25549T C28887T G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566533
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C211D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T C6941T T8983G C14408T G14414T C15324T C21855T A23403G A25505G G25906C G25996T A28133T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566535
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G23311C A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566541
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C20B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566545
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2238/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C24797T C25517T GGG28881AAC C29073T C29627T G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566552
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C2256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T A12130G C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566555
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC C29750T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566570
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C22DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21099T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566571
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C20E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566593
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1FBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T C20956T G21099T G21255C C22227T A23403G C25324Y C26801G C27944T C28932T A29622C G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566595
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C1E08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C936T A2342G C3037T G3259T C11591T C14408T G17122T C18348T A23403G A26069G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566597
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2933/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T G22205C C22227T A23403G C26801G C27881A C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566598
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2906/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T G22205C C22227T A23403G C26801G C27881A C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566617
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C213B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T772C A2869G C3037T C6445T C10868T C14408T G15652T A23403G G23438T GGG28881AAC C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566618
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2915/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T G22205C C22227T A23403G C26801G C27881A C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566633
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C2265/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C9050T C11747T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566636
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C2247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29402T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566644
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C21B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1097R C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566654
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/Wales/MILK-9C21D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566819
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C3AA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29017A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566895
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/MILK-9C312B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C26447T GGG28881AAC G28903T G29017A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567001
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C851B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C4058Y C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567002
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8FFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G C25096T C26801G C27944T C28932T G29645T C29732T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567003
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C828D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567007
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C83A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3998A C9096T A11923G C14408T C16915T C18877T G21204T A23403G G23441A T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567008
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8399/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T G21255C C22227T A23403G C26801G T27484C C27944T C28603T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567009
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/Wales/QEUH-9C7F4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T A11462R C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567010
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7B1A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C27661T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567011
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7B47/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C C27476T G28975C G29399A G29427A G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567012
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7C44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T T13402C G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25626T C25710T C26735T T26876C A27403G G28851T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567013
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8566/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567016
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/Northern Ireland/QEUH-9C85A2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T A13852G C14408T G18155T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567018
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C837B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567019
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7B83/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C4212T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567020
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C84E1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567025
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C844B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T T1813A C3037T C4158T C8318A C10615T T13954C C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567027
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7FA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567028
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C852A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G T27384C G28378T C28932T G29645T G29757T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567030
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567031
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G G26217T C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567032
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7E7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567033
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8593/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26461T C26735T G27602T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567035
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7DF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T C19862T G22992A A23403G G25563T C25710T C26326T C26735T T26876C A27403G G28851T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567036
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8681/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5158C C5812T C6016T C8146T G10097A C14408T C15738T C17012T T18750C C21639T A23403G C23731T G26062T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567038
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8AB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T G13812T C14408T G15406T G16377T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567039
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8900/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T A13063G C14408T G15438T A23403G C25207T C25665T G25951T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567042
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C896A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C3717T C5622T G11083T G13564A G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567044
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7FB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A1386G C3037T T3256C C5622T C5724Y G7756T G11083T C11345T G14202T C14408T G14511T G16549A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567045
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8B46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3117T C9096T A11923G C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567046
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8214/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567049
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8557/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T C2416T C3037T G8303A G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567050
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7EA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2407T T2924C C3037T C3602T G4442T C6525T C6941T G11761T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567051
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C91F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567052
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7B38/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T T17556C G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T G25726T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567053
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C919E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T G25177T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567054
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8AA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567055
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T168C C241T C3037T A13308G C14408T C19602T A23403G G25785T T27428C G27877T G28487C GGG28881AAC G28899A C29364T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567057
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8DD7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T G16377T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567058
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7FE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29017A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567061
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7ED5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A1386G C3037T T3256C C5622T G7756T G11083T C11345T G14202T C14408T G14511T G16549A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567064
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8997/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T C29149T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567067
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C81EA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G13812T C14408T C18646T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567068
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C827E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567070
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8584/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C20762T A23403G T24088C G25617T G28655C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567072
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8320/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567073
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C841E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567074
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7DE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C4234Y C6286T G11801R C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567075
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7D8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C17934A A23403G T24088C G25617T C28312T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567078
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C82E7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C9598T C10207T A13187G C14408T G21255C C21812T C22227T C23275T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567079
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C84D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T3163C C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567082
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9125/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T C19017T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567090
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8663/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567091
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8539/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C21590S C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567093
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8B28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T A13063G C14408T G15438T A23403G C25207T C25665T G25951T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567097
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8AC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C635Y C3037T C3117T C4543Y C9096T A11923G C14408T C16915T C18877T G21204T A23403G T24202C C24213Y C25521Y G25563T C26735T C27509Y G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567106
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8B64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A G11083T C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567107
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C85EE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1743A C3037T C3486T T9205C C14408T C16887T A22893G A23403G G25471T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567108
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/Wales/QEUH-9C8047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T G5230K C6286T C14408T G21210A G21255C C21614T C22227T A23403G C23423T G26211T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567111
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7B74/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C4212T C6286T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567112
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C91CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204C C241T C1288T C3037T T3163C C4345T C9836T C12053T C14408T G22468T A23403G T25150C T25202K GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567116
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C86BE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T G14500T C21575T C21637T C22227T G23282T A23403G C23525T G25177T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567117
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8979/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6762T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21575T A23403G G23621T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567119
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C83D5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5312T C6120T C8320T G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567120
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C83E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C183T C241T C3037T A9433T G10265A C14408T G15380T A19650G A23403G G23621T G27841T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567121
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7F78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567122
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C83B7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567123
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7BCF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G17331R G18674A G21099T A23403G G25726T A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567125
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8029/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26228T T26609C C26801G A27609C C28932T G29645T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567127
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C85DF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC C29545T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567128
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C84B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567129
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C84F0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C8650Y C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567132
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8618/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T A15367G C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567135
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C84A5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T G11083T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567139
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C82C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T G19684T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567140
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C80FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T C19862Y A23403G C27741T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567143
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C88E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C10138T C12525T C14408T C17002Y G19648T A20268G T21158C C23320T A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567144
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8223/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6927T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567146
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C843C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T168C C241T C3037T A13308G C14408T C19602T A23403G G25785T T27428C G27877T G28487C GGG28881AAC G28899A C29364T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567147
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C800B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2445T C3037T C8683T C14408T G15406T C16260T A19960G C21637T A22029C A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567148
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8144/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T7767C C8047T G11557T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C G25606T C26313T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567149
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C82F6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567152
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8478/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4440A C8650T C14408T G20477T C21575T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567153
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8CCB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T C17518T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567154
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7E8A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C9430T C10582T G11557T C12823T C14408T G16106A G23009T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567156
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/Wales/QEUH-9C7FD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567157
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9107/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2445T C3037T C8683T C14408T G15406T C16260T A19960G C21637T A22029C A23403G C26873T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567159
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8DE6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567161
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8CF8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567162
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8D5F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C A22206T C22227T A23403G G25049T G25062T C26801G C28657T C28932T G28960T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567166
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7F3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2113T C3037T A8086G A9433T TAT9858- G10265A C12919T C14408T A19650G A23403G G24193T T24499C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567167
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C87CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T C22680T A23403G G23426T A28169G GGG28881AAC C29370T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567168
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7F69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G6943T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567172
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7F87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G C25667T GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567173
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8092/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G61T C241T C3037T C4021T C5115T C5339T G8548T A9900C C12733A C14408T C18115T C19402T A19855G C21812T A23403G C23538T G26526T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567174
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C82BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1150T C2416T C3037T G8303A G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567177
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8B37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T G7042A C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567179
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7C62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T G23311C A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567183
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7EC6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567187
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8BA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C13019T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567188
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7E99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C4331T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567190
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9134/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A7240C C8683T C12084T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567191
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8232/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567193
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A C11124T C14408T G14792T C15848T G17049T G19254T T19893C T23042C A23403G C25611T C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567194
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C12396T C14408T C21302T CG21304AA C21588T A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567195
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G252T T1947C C3037T C7528T C11824T C14408T C18877T C20956T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567196
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8250/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567198
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7E4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C8917T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28453T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567200
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8083/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C G526K C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567201
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C85B1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567204
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8A76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C6286T C14408T G21255C C22088T C22227T A23403G C26801G C28932T G29645T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567205
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C829C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T T5446Y C6286T A11533G C14408T G21255C C21614T C22227T A23403G C24334T T26424C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567208
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C845A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T A11781G C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567209
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8B82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3117T C9096T A11923G C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567210
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C80CF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A739G C3037T C4543T C4698A G5629T G9526T C10681Y C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567211
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8B91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C17934A C21658T A23403G T24088C G25617T C25642T C27297T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567212
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7DBA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29017A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567215
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C833F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567216
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8B73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3117T C9096T A11923G C14408T C16915T C18877T G21204T A23403G T24202C G25563T C26735T G28899T G29692T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567219
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8B19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T A13063G C14408T G15438T A23403G C25207T C25665T G25951T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567222
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9143/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G T28251G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567223
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C86EB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C26985T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567226
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C91E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A2647G C3037T T3256C G3638T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567228
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7EE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C10228T G12067T C14408T C18877T G21867T C22444T A23403G G25563T C26735T C27427T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567229
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8DF5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T G1322T C2445T C3037T C9430T C14408T T15156C C20368T A23403G C26527T GGG28881AAC C29149T G29239A C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567235
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C90BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567237
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C836C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C3037T C9430T C10582T C12513T C12823T C14408T A23403G G28368A GGG28881AAC T29624Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567239
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C835D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G6943T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567240
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C12119T C14408T T20367Y A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567242
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C86CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T A20599C G21255C C22227T A23403G C26801G C27944T G28371T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567244
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7F2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567245
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C891F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G T28251G GGGG28881AACT A29060G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567246
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C80A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4655T G5305A A5958G C14408T C21302T CG21304AA A23403G GGGG28881AACT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567249
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7E6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567252
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8DAA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567255
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/Wales/QEUH-9C87AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C G3794T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567256
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C826F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567261
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8575/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204C C241T C1288T C3037T T3163C C4345T C9836T C12053T C14408T G22468T A23403G T25150C T25202K C28153T GGG28881AAC C29625T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567266
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8135/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567267
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C80ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567268
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C86AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A3859R G11230T C14408T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567540
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4B77/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1659T C3037T C3884T T7341C C8290T C14408T C18877T C20199T C20233T G20305T A23403G G25563T C26139T C26735T T27634C G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567551
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5648/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T A2219G C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G G25595T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567552
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5B1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567567
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5A88/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28473A GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567570
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5AD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24146T C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567579
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5842/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T G3004T C3037T C4002T C4890T G8353A T9289C G10097A G11873A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567603
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5A97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567608
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4CDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T C10456T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567609
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5B2B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T G3304T C6196T C8683T C14408T G15406T G20489T C21637T A23403G G23624T G24173T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567610
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4BD1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567614
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4BC2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G G27632C C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567615
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5815/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C8139T G11083T C13554T C14408T C21058T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567637
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C58E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2745G C3037T G4105T C4391A C11124T C14408T G14792T C15848T G17049T G19254T T19893C C20941T T23042C A23403G G23593T A25725G C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567640
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5A6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C3425T C6286T C7011G C12119T C14408T A21222T G21255C C22227T A23403G C25889T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567645
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13381T C14408T C17934A A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567663
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5AC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3261T C8950T C14408T G19542T A20268G C22687T A23403G A23947G A24369T C27847T C28854T C29200T C29451T G29736T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567667
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5B3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T A13801G C14408T G15543T T20661C G21255C C22227T A23403G G24697T C25156T C26801G C28932T C29366T C29386T G29628T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567675
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C58D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G6439A C8092T C8683T C13170T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567677
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C58F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C1710T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567681
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5A1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T T13890C C14408T G21255C C22227T A23403G C26625T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567684
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4CA1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567687
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4D80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567690
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4CCF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T T16993C G18859T G21624T T22324G A23403G C25511T C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567692
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5666/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T C19017T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567698
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C588E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10156T C14408T A20742C A23403G GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567699
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5AF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567711
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5A79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29017A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567713
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4BB3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26801G C27684T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567715
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T C19017T T19120Y A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567718
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4B4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567730
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5851/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G T24769C C25460T C26801G G27505T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567736
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5806/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C8139T G11083T C13554T C14408T C21058T G21255C C22227T G22346T C22377T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567737
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4B95/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C10156T C14408T A20742C A23403G T28297C GGG28881AAC G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567739
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C587F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C608T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567744
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5A2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6720T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567749
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5AA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T T18471Y G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29017A G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567755
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5AB5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G C28253Y GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567759
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4C92/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T G25951A GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567762
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4BE0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1623Y T1947C C3037T C7528T C14408T C18877T T19383C C22444T G23009T A23403G G25563T C26735T G28001K C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567767
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5A5B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T C15654T A23403G T24088C G25617T C28411T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567804
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4B86/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1659T C3037T C3884T T7341C C8290T C14408T C18877T C20199T C20233T G20305T A23403G G25563T C26139T C26735T T27634C G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567806
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4D71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567820
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C58AC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C117Y G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G G27632S C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567825
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4BFF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1218T A2576T C3037T C5175T C6401T A10323G C11152T C14408T T17742C A23403G G23593T C26058T C28512A GGG28881AAC A29700G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567830
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C4BA4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1659T C3037T C3884T T7341C C8290T C14408T C18877T C20199T C20233T G20305T A23403G G25563T C26139T C26735T T27634C G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567841
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C589D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1468G C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567861
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C58CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C1710T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567862
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5A4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567881
 2020-09-11 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9C5860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C A3854G C5622T G14202T C14408T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568590
 2020-09-11 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1492/2020
 ATTAA1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C22594A A23403G C24223T G25563T G25907T C27610T C27964T C28472T C28869T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_568591
 2020-09-11 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1493/2020
 ATTAAAGGTT1- C241T C2416T C3037T C14408T C16616T A23403G G25563T C26885T C27603T C28724T C28887T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_569237
 2020-09-11 2020-10-02
 France hCoV-19/France/IHU-1628/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T T445C C3037T G4006T C5170T G5504A C6286T G11132T C14408T G21255C C22227T A23403G T26609C C26801G C28932T C29274T G29645T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569238
 2020-09-11 2020-10-02
 France hCoV-19/France/IHU-1629/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C222T C241T C503T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18788T C18877T G22992A A23403G G25563T C25710T G26720T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_569240
 2020-09-11 2020-10-02
 France hCoV-19/France/IHU-1631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A C23191T A23403G G25563T C25710T C26735T T26876C G28975C G29399A TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_536657 MW035455
 2020-09-12 2020-09-16
 United States SARS-CoV-2/human/USA/WI-UW-1285/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G23126T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_539327
 2020-09-12 2020-09-18
 Australia hCoV-19/Australia/NSW2754/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C8950T C14408T G16647T C18555T C22480T G22992A G23401A A23403G G24764T C26801T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_540710
 2020-09-12 2020-09-21
 United Kingdom hCoV-19/England/NOTT-1131E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T A5599G C7528T C14408T C18877T C22444T A23403G G25563T C26735T G27602T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541567 MW031001
 2020-09-12 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1434/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541569 MW031003
 2020-09-12 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1436/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3190G C3695T C9994T C10319T C14408T A18424G C19868T A21037G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541570 MW031004
 2020-09-12 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541575 MW031010
 2020-09-12 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19816T C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541576 MW031011
 2020-09-12 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1444/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C203T C241T G370T C1059T C2607T C3037T C14408T A14634G C18555T A23403G G25563T C28892T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541579 MW031014
 2020-09-12 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1447/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C2142T C3037T G3871T T3931C C6285T C14408T C19524T C20429T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541583 MW031018
 2020-09-12 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1451/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1157A C3037T G8083A C10319T C14408T C14805T A18424G T19215C G19816T C21304T A23403G G25563T C25710T G25907T C26882T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541586 MW031021
 2020-09-12 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1454/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A A9085G C10319T C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541590 MW031025
 2020-09-12 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1458/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1820A C1824T C3037T C7768T C11575T G12243T C14408T C15848T A20268G A20374G A23403G G25593T C26013T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541595 MW031030
 2020-09-12 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1463/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541598 MW031033
 2020-09-12 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1466/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T A3190G C3695T C9994T C10319T C14408T A18424G C19868T A21037G C21304T C23320A A23403G G25563T G25907T C27964T GTTCTA28090- C28472T C28657T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541600 MW031035
 2020-09-12 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1468/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T A23403G G23900C A24253T G25563T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541611 MW031046
 2020-09-12 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1479/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T A23403G G23900C A24253T G25563T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547847
 2020-09-12 2020-09-24
 United States hCoV-19/USA/WI-GMF-19935/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T T1592C C2003T C2416T C3037T C4993T C6113T C14408T T16530A G21372T A23403G G25563T A28493G C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547848
 2020-09-12 2020-09-24
 United States hCoV-19/USA/WI-GMF-19968/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C3037T T8038A C10319T C12756T C14408T C14805T A18424G C21304T A23403G C23707T G25907T C27964T C28472T C28869T G29402T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549479
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/England/NORW-EF5BD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549480
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/England/NORW-EF869/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2536T C3037T C14408T G15438T C18377T A23403G C25207T G25565T C25665T T26160C G26918T C28453T GGG28881AAC T29464C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560083
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A66B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29041T G29645T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_560090
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A6D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_560119
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A8B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29679T AAA29901-

EPI_ISL_560120
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A8CF/2020
 AT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560135
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16A9CC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560162
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AB7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_560168
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ABD5/2020
 ATTAAAGGTTTATACC1- G204T C241T T445C C3037T C6286T C12295T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T AA29902-

EPI_ISL_560174
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AC3C/2020
 ATTA1- G204T C241T T445C T511C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T A28792T C28932T G29645T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_560178
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AC78/2020
 ATTAAA1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800M G28817T G29734C

EPI_ISL_560179
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AC87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T C335Y T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560191
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AD48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T C335Y T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560198
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ADB1/2020
 ATTA1- G204T C241T T445C C3037T C6286T C14408T C15480T G15672T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_560208
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AE54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28087T C28932T G29645T

EPI_ISL_560218
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AEFA/2020
 ATTAAA1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800M G28817T G29734C AAA29901-

EPI_ISL_560223
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AF42/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C T511C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T A28792T C28932T G29645T

EPI_ISL_560249
 2020-09-12 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B14B/2020
 C241T A1163T C3037T T3256C C5622T C5826T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_563507
 2020-09-12 2020-09-30
 Australia hCoV-19/Australia/VIC12018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3164A T7540C C13677T C14408T C16457Y G16647T A17337G C17339T C18555T C21714Y G22992A G23401A A23403G C23655T C25047Y GGG28881AAC A29770W TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563534
 2020-09-12 2020-09-30
 Australia hCoV-19/Australia/VIC12177/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- CG241TT A1163T C3037T G3860T T7540C C8152T A13974G C14408T C15352T G16647T C18555T C21812T G22992A G23401A A23403G G24992C A26162G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563548
 2020-09-12 2020-09-30
 Australia hCoV-19/Australia/VIC12244/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563557
 2020-09-12 2020-09-30
 Australia hCoV-19/Australia/VIC12385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C4900T C5144T T7540C G11083K C14408T G16647T C17123Y C18555T T21925C G22992A G23401A A23403G A26759T A27277G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563566
 2020-09-12 2020-09-30
 Australia hCoV-19/Australia/VIC12476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3738T C4832T T7540C C9491T C11345T C14408T G16647T C18555T C19170T G21800T C21952T G22992A G23401A A23403G C26571T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563573
 2020-09-12 2020-09-30
 Australia hCoV-19/Australia/VIC12585/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C3738Y T7540C C12116T C12756Y C14408T G16647T C18555T C21516T G22205K G22992A G23401A A23403G A27024C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563600
 2020-09-12 2020-09-30
 Australia hCoV-19/Australia/VIC12839/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563723
 2020-09-12 2020-09-30
 Australia hCoV-19/Australia/VIC13419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T T1297C C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563868
 2020-09-12 2020-09-30
 Australia hCoV-19/Australia/VIC13894/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T C920T A1163T C3037T C7471T T7540C C14408T G16647T A17337G G17721T C18555T G21123T G22992A C23191T G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563875
 2020-09-12 2020-09-30
 Australia hCoV-19/Australia/VIC13903/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T C7471T T7540C C14408T G16647T A17337G G17721T C18555T G21123T G22992A C23191T G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563974
 2020-09-12 2020-09-30
 Australia hCoV-19/Australia/VIC14115/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C C9474T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_567040
 2020-09-12 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7C08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T G28703T GGG28881AAC C29545T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567041
 2020-09-12 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7C26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T T3655C C6286T T7729Y C14408T T20661C G21255C C22227T A23403G C26801G C28439T C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567103
 2020-09-12 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8636/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A3405G C6286T C10448T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567104
 2020-09-12 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7FF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C19868Y C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567155
 2020-09-12 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C87BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C1912T C3037T G4180T G6554A C9724T T10453C C11195T C14408T G15380T C18508T A23403G C27741T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567180
 2020-09-12 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7BDE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C A27403G G28851T G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567189
 2020-09-12 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7C71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567203
 2020-09-12 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7B65/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T G22992T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567218
 2020-09-12 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C7BFC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26571Y C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_569241
 2020-09-12 2020-10-02
 France hCoV-19/France/IHU-1632/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAAAATCTGTGTGGCTGTCACTC1- C241T A2969G C3037T C5183T C10525T C14408T G14638T G16377T C17119A A23403G A26040G T27299C C28093T G28122T G28764T GGG28881AAC T29148C G29212A G29543T TAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29804-

EPI_ISL_540711
 2020-09-13 2020-09-21
 United Kingdom hCoV-19/England/NOTT-113212/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C8917T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23557T C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540713
 2020-09-13 2020-09-21
 United Kingdom hCoV-19/England/NOTT-113230/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T A23403G C26228T T26609C C26801G A27609C C28932T G29645T C29835T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540715
 2020-09-13 2020-09-21
 United Kingdom hCoV-19/England/NOTT-11325E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T C7279T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540892
 2020-09-13 2020-09-21
 United Kingdom hCoV-19/Scotland/EDB7761/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3924T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G C20451T TACATG21765- C22879A A23403G T24910C T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540893
 2020-09-13 2020-09-21
 United Kingdom hCoV-19/Scotland/EDB7762/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T G8179T G11083T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541574 MW031009
 2020-09-13 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1442/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T A23403G G23900C A24253T G25563T G28681T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541580 MW031015
 2020-09-13 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T C15654T C16092T C16260T A23403G G23900C A24253T G25563T C26967A C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547849
 2020-09-13 2020-09-24
 United States hCoV-19/USA/WI-GMF-20111/2020
 ATTAAAGGTTTATACCTTCCCA1- C241T C1059T C3037T C3773T C7086T C11868T T14191C C14408T C15654T C16092T C16260T G17302T A23403G G23900C A24253T G25563T C28821A G29554A G29808T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549481
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/England/NORW-EFA09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G4442T C6525T C6941T C14408T C15324T A16044T C21855T A23403G A25505G G25906C G25996T C28651T C28725T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559907
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/England/SHEF-C48F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T G21800T A23403G G25687A GGG28881AAC A29357G T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559941
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/England/SHEF-D1A64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C25831T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560144
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AA50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T G11083T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29870M

EPI_ISL_560145
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AA6F/2020
 ATTAAAG1- G204T C241T T445C C3037T C6286T G11083T C14408T C15480T G21255C C21614T C22227T C22329Y A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560153
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AAE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29870M

EPI_ISL_560166
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ABB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C T511C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T A28792T C28932T G29645T C29870M

EPI_ISL_560169
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ABE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560171
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AC0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- G204T C241T T445C C3037T C6286T G10540T C14408T C15480T G21255C C21614T C21846T C22227T A23403G C26801G C27944T C28932T G29050A G29645T

EPI_ISL_560172
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AC1E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G G26158T C26801G C27944T C28932T G29645T A29903-

EPI_ISL_560175
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AC4B/2020
 ATTAAAGGTTTA1- G204T C241T T445C T511C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T A28792T C28932T G29645T AAAAAAAAAAAAAAAAAAAAA29883-

EPI_ISL_560183
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ACC3/2020
 ATTAAAGGTTTA1- G204T C241T T445C C3037T C6286T C14408T G20679R G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560194
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AD75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G15672T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560200
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16ADDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C T511C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T A28792T C28932T G29645T

EPI_ISL_560216
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AEDC/2020
 ATTAAAGG1- G204T C241T C335Y T445C T511C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T A28792T C28932T G29645T AAA29901-

EPI_ISL_560217
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AEEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC

EPI_ISL_560221
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AF24/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2455Y C3037T C8683T C14408T G15406T T19697Y C20104T C21637T A23403G A28169G GGG28881AAC

EPI_ISL_560234
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B03F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560245
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B10F/2020
 ATTAA1- G204T C241T T445C C3037T C4421T C6286T C7926T C9745T C13436T C14408T G21255C C22227T A23403G C26801G C27879T C27944T C28932T G29645T

EPI_ISL_560284
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B3CD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- G204T C241T T445C C3037T C6286T C10449T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T

EPI_ISL_560300
 2020-09-13 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B512/2020
 ATTAAAGGTT1- G204T C241T T445C C3037T C4421T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_563552
 2020-09-13 2020-09-30
 Australia hCoV-19/Australia/VIC12350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T508A A1163T C3037T T7540C C8917T C14408T G16647T C18555T G22992A C23248T G23401A A23403G A24340C G25993A G27506A GGG28881AAC G29692T G29777T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563553
 2020-09-13 2020-09-30
 Australia hCoV-19/Australia/VIC12352/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C T27483C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563562
 2020-09-13 2020-09-30
 Australia hCoV-19/Australia/VIC12418/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T C21207T C22792T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563571
 2020-09-13 2020-09-30
 Australia hCoV-19/Australia/VIC12551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T G2659T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563576
 2020-09-13 2020-09-30
 Australia hCoV-19/Australia/VIC12604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C106T C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_563590
 2020-09-13 2020-09-30
 Australia hCoV-19/Australia/VIC12770/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C T27483C G28326C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563595
 2020-09-13 2020-09-30
 Australia hCoV-19/Australia/VIC12796/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T G2659T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563599
 2020-09-13 2020-09-30
 Australia hCoV-19/Australia/VIC12833/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T G2659T C3037T C5144T T7540C C14408T C15925T G16647T C18555T T21925C G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563736
 2020-09-13 2020-09-30
 Australia hCoV-19/Australia/VIC13448/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C G9918A C14408T C15371T G16647T A17337G C18452T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563792
 2020-09-13 2020-09-30
 Australia hCoV-19/Australia/VIC13639/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563840
 2020-09-13 2020-09-30
 Australia hCoV-19/Australia/VIC13790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_563850
 2020-09-13 2020-09-30
 Australia hCoV-19/Australia/VIC13835/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G G26951K GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563864
 2020-09-13 2020-09-30
 Australia hCoV-19/Australia/VIC13888/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C T27483C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_567282
 2020-09-13 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA31F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567317
 2020-09-13 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9310/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T A27455G GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567360
 2020-09-13 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA41C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C2455T C3037T C6286T C14408T G21255C C21614T C21660T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567362
 2020-09-13 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA36A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5554T C5869T G9130T A9946G C14408T G19891T C21575T C22938A A23403G C24034T G25249T C25487T G26152T C27532T G28321T GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567392
 2020-09-13 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T C19017T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567409
 2020-09-13 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA4EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T C16733Y A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567505
 2020-09-13 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C9301/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4291T C8683T C14408T G15406T C16260T C19862T A19960G C21637T A23403G C23435T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567511
 2020-09-13 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA4D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C936T A2342G C3037T G3259T C11591T C14408T G17122T C18348T C21365Y A23403G A26069G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567514
 2020-09-13 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9CA4A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C936T A2342G C3037T G3259T C11591T C14408T G17122T C18348T A23403G T25202K A26069G G27281T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_540718
 2020-09-14 2020-09-21
 United Kingdom hCoV-19/England/NOTT-1132A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C4999T A5599G C7528T C14408T T18426C C18877T C22444T A23403G G25563T C26735T G27602T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541542 MW031050
 2020-09-14 2020-09-22
 United States SARS-CoV-2/human/USA/IL-UW-1483/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A A9085G C10319T C11956T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541543 MW031055
 2020-09-14 2020-09-22
 United States SARS-CoV-2/human/USA/IL-UW-1488/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A122G C241T C1191T C3037T C9521A C12073T C12459T C12789T C14408T C20233T A20268G C21575T A23403G C23701T C24904T C28854T G29422T A29567G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541548 MW031088
 2020-09-14 2020-09-22
 United States SARS-CoV-2/human/USA/IL-UW-1521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T CC1059TT C1385T G1738T C2710T C3037T G3242A C9438T G9929A C11916T C14408T A23403G G25563T C28087T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541549 MW031089
 2020-09-14 2020-09-22
 United States SARS-CoV-2/human/USA/IL-UW-1522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C4876T G8083A C10319T C14408T C14805T A18424G C21304T C22079A A23403G G25563T G25907T C27964T C28472T C28869T C29364T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541550 MW031091
 2020-09-14 2020-09-22
 United States SARS-CoV-2/human/USA/IL-UW-1524/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A A9085G C10319T C10833T C11956T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541614 MW031051
 2020-09-14 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1484/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1188T C3037T G8083A C10319T C14408T C14805T A18424G G19872T C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541623 MW031063
 2020-09-14 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1496/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T C11674T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541628 MW031068
 2020-09-14 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1501/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7712T G8083A C10319T C12049T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541631 MW031072
 2020-09-14 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1505/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T A7837C C14408T G19677T A23403G C23910T C26585T C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541633 MW031074
 2020-09-14 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G G19872T C20104T C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541647 MW031092
 2020-09-14 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3695T C9994T C10319T C14408T A18424G C19868T C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541648 MW031093
 2020-09-14 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1526/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C8139T C9165T C10319T G11083T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547850
 2020-09-14 2020-09-24
 United States hCoV-19/USA/WI-GMF-20119/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A696C C1427T C3037T G3871T T3931C C6285T C14408T C19524T C20429T A23403G C28977T G29808T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547851
 2020-09-14 2020-09-24
 United States hCoV-19/USA/WI-GMF-20122/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A696C C1427T C3037T G3871T T3931C C6285T C14408T C19524T C20429T A23403G C28977T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547853
 2020-09-14 2020-09-24
 United States hCoV-19/USA/WI-GMF-20149/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A696C C3037T G3871T T3931C C4226T G5332A C5672T C6990T A7837C C14408T G19677T A23403G G25947T C28977T G29744T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547855
 2020-09-14 2020-09-24
 United States hCoV-19/USA/WI-GMF-20172/2020
 ATTAAAGGTTTATACCTTCCC1- C241T C1059T C3037T C4719T G8083A G8372A C10319T C12084T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28869T G29402T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547858
 2020-09-14 2020-09-24
 United States hCoV-19/USA/WI-GMF-20228/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T G1738T C3037T C14408T C16575T A19736G T19839C T20252G A23403G A23756G G28378T GGG28881AAC G29751T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547859
 2020-09-14 2020-09-24
 United States hCoV-19/USA/WI-GMF-20271/2020
 ATTAAAGGTTTATACCTTCCCAGGT1- C241T A696C C3037T G3871T T3931C C4226T C5672T C6990T A7837C G10271A C14408T G19677T A23403G C24378T G25687T G25947T C28977T G29744T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_547861
 2020-09-14 2020-09-24
 United States hCoV-19/USA/WI-GMF-20276/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T A831G T1562C G2035T C3037T A3262G T3745C C11674T C11956T C12025T C12484T C14408T T19839C A23403G C23707T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_548972
 2020-09-14 2020-09-28
 Singapore hCoV-19/Singapore/963/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACG1- C241T G1167A A2512G G3025T C3037T C8917T G9389A C14408T A23403G G25770T GGG28881AAC AAAAAAAAAAAA29892-

EPI_ISL_549491
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/England/NOTT-11329A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549492
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/England/NOTT-1132B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C8917T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23557T C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549493
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/England/NOTT-1132C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A A23403G C23625T A25910G G28027T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559913
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/England/SHEF-C6AF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C G22014T C22227T A23403G C25831T C26801G C27944T C28313G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559979
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/Scotland/EDB7763/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559980
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/Scotland/EDB7765/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10078T C11396T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559981
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/Scotland/EDB7768/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C11747T C14408T G21255C C22227T G22346T C22377T A23403G C25000T C26801G C27143T C28932T G29645T G29751T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560224
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AF51/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C T511C C3037T C6286T C11396T C14408T G21255C C21614T C22227T G22487R A23403G G25720T C26801G C27944T G28001T A28792T C28932T G29645T

EPI_ISL_560229
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AFAC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- G204T C241T T445C T612A C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560233
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B020/2020
 ATTAAAGGTTTATACC1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G28817T G29734C

EPI_ISL_560244
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B0E4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T G20670A C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_560257
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B1C3/2020
 ATTAAAGGTT1- G204T C241T T445C T1391C C3037T C4784T C6286T C7926T C9745T G11243T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560267
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B293/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C3037T T7767C C8047T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- C22879A A23403G T24910C G25494T T26972C C27800A G28817T G29734C

EPI_ISL_560276
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B345/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C2592T C3037T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560287
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B406/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAAC1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560296
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B4D9/2020
 ATTAAAGGTTTATACCTTCCCA1- G204T C241T T445C T511C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T A28792T C28932T G29645T

EPI_ISL_560299
 2020-09-14 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B503/2020
 ATTAAAGGTTTA1- G204T C241T T445C T511C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T A28792T C28932T G29645T

EPI_ISL_560818 MW049009
 2020-09-14 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0205/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- G174T C241T C1059T C3037T C9893T C12400T C14408T C16173T G18816T G19999T G23149T A23403G G25563T T28902A T29867G A29869G A29891C AAAAAAA29897-

EPI_ISL_562725
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13892/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C1302T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- TAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29848-

EPI_ISL_563615
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC12977/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563725
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13423/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C9360Y C14408T G16647T C18555T T21925C C22329Y G22992A G23401A A23403G A26759T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563727
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13425/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563733
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C G9738A G11083T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563735
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563737
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13461/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G C24138Y A26759T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563811
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13705/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T T1297C C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563825
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13753/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563841
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13821/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G A26759T A27277R GGG28881AAC T28933Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563842
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13822/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T T508A A1163T C3037T T7540C C8917T C14408T G16647T C18555T G22992A C23248T G23401A A23403G A24340C G25993A G27506A GGG28881AAC G29692T G29777T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563849
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13834/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C3624A C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563851
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13838/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T T508A A1163T C3037T T7540C C8917T C14408T G16647T C18555T G22992A C23248T G23401A A23403G A24340C G25993A G27506A GGG28881AAC G29348K G29692T G29777T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563852
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13841/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C T27483C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563856
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13853/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T508A A1163T C3037T T7540C C8917T C14408T G16647T C18555T G22992A C23248T G23401A A23403G A24340C G25993A G27506A GGG28881AAC G29348K G29692T G29777T TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563867
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13891/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T C21575Y G22992A G23401A A23403G A27024C T27483C GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563873
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13901/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T6226C T7540C A13063G A14084G T14091C C14408T G16647T C18555T G22992A G23401A A23403G C23707T T27785C GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563874
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13902/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C T27483C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563877
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13905/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C T27483C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563878
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC13908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T T18358Y C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563973
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC14114/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T C7279T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563975
 2020-09-14 2020-09-30
 Australia hCoV-19/Australia/VIC14116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G G25691T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_566125
 2020-09-14 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCE1C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C14786T C18877T G22035K C22444T A23403G A24913W G25563T C26735T C28854T G29468T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567131
 2020-09-14 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C90DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- C3037T A4291T C8683T C14408T G15406T C16260T C19862T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567142
 2020-09-14 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C8F4A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1796A C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT G22335T A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568595
 2020-09-14 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1497/2020
 AT1- C241T C1059T C2003T C3037T C10319T C14408T A18424G C21304T A23403G C25276T G25563T G25907T C27686T C27964T C28472T C28869T TCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29856-

EPI_ISL_568664
 2020-09-14 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1566/2020
 ATTAAA1- C241T T243C A2015G C3037T A6360G C9541T G11083T C14408T C15744A A23403G C24502A GGG28881AAC TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_568665
 2020-09-14 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1567/2020
 ATT1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C22594A A23403G G25563T G25907T C27964T C28472T C28869T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_568666
 2020-09-14 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1568/2020
 ATTA1- C241T C1059T C3037T C10319T C14408T A18424G C21304T C22594A A23403G G25563T G25907T C27964T C28472T C28869T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_568667
 2020-09-14 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1569/2020
 ATTAAAGGTT1- C241T C1059T C3037T C6628T C8829T A10323G G11417T C14408T G20679T A23403G G25563T C27131T G28842T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_541541 MW031048
 2020-09-15 2020-09-22
 United States SARS-CoV-2/human/USA/IL-UW-1481/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2655T C3037T C4002T C5144T C6401T G8353A G10097A C13536T C14408T C16376T C17004T C20104T G21423T A23403G C23731T G24781T C25413T C26208T T27902C G28280T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541615 MW031052
 2020-09-15 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541625 MW031065
 2020-09-15 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1498/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T G11083T C12374T C14408T C14805T A18424G C21304T T21983G A23403G G25563T G25907T C27673A C27964T C28472T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541627 MW031067
 2020-09-15 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1500/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T G10793A C14408T C14805T G15243T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541629 MW031069
 2020-09-15 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1502/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1562C G2035T C3037T A3262G T3745C C11563T C11956T C12025T C14408T T19839C A23403G C23707T GGG28881AAC C29769T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541630 MW031071
 2020-09-15 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1504/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4898A G6032A C7777T T12805C C14408T G21330T A23403G C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541643 MW031084
 2020-09-15 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1517/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T221C C241T C3037T T6668A T12139C C12880T C14408T T17589C C17745T C18060T C18568T A20268G A23403G C23707T G24038T C28854T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541646 MW031090
 2020-09-15 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G903T C1059T C1473T C3037T G8083A A9085G C10319T C14408T C14805T A17015C A18424G C21304T A23403G G23593T G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547866
 2020-09-15 2020-09-24
 United States hCoV-19/USA/WI-GMF-20389/2020
 ATTAAAG1- C241T C1059T C3037T C4719T G8083A G8372A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28869T G29402T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547867
 2020-09-15 2020-09-24
 United States hCoV-19/USA/WI-GMF-20407/2020
 ATTA1- C203T C241T C1059T G1439T C2607T C3037T C14408T A14634G C18555T G22272A C22432T A23403G G25563T C28892T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547868
 2020-09-15 2020-09-24
 United States hCoV-19/USA/WI-GMF-20442/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T G2782T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28869T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_547869
 2020-09-15 2020-09-24
 United States hCoV-19/USA/WI-GMF-20447/2020
 ATTAA1- C241T A831G T1562C G2035T C3037T A3262G C11674T C11956T C12025T C12756T G13822A C14408T T19839C A23403G C23707T GGG28881AAC C29769T AGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29860-

EPI_ISL_549494
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/England/NOTT-1132E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T G19542T C19718T C22388T A23403G C26060T G27987T GGG28881AAC G29227T G29254A C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549495
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/England/NOTT-1132F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C17738T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549496
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/England/NOTT-113300/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C T2489C C3037T C6286T C12119T C14408T A21222T G21255C C22227T A23403G G25647C C25889T C26801G T27851C C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549501
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/England/NOTT-1133A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C8917T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23557T C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549522
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/England/NOTT-1136CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10885C G11230T C14408T A23403G T23560C T24088C A25605T G25617T C27494T G28655A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559899
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/England/SHEF-C22D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T809C C829T C1960T C3037T C5301T C5907T C13247T C14408T C14937T T18144C C19977A A23403G C26681T C28011T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559909
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/England/SHEF-C5F73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C5575T C6286T C14408T A15753G A19655G G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559933
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/England/SHEF-CD746/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G T23626C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559982
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/Scotland/EDB7769/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C11956T C14408T T15276G A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28332T C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560231
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B002/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560258
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B1D2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T

EPI_ISL_560260
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B21B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T445C A1987G C3037T C6286T G6344T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_560261
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B22A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_560264
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B257/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T G1210T G2281A C3037T C9166T G9802T G12067T C14408T A23403G A23450R GGG28881AAC C29555T

EPI_ISL_560288
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B424/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G G26158T C26801G C27944T C28932T G29645T

EPI_ISL_560292
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B49D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- G204T C241T T445C C3037T C6286T C14408T C15480T G15672T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560295
 2020-09-15 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B4CA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- G204T C241T T445C C3037T C6286T C11396T C14408T G20326T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T

EPI_ISL_560817 MW049008
 2020-09-15 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0204/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C1385T G1738T C3037T G3242A G6611T T11581A C11916T C14408T C21034T A23403G G25563T C28087T TGGCGG28912- C29420T AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_560820 MW049011
 2020-09-15 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0207/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C1385T G1738T C3037T G3242A G6611T C11916T C14408T A16410G A23403G G25563T C28087T TGGCGG28912- A29873C A29886T

EPI_ISL_560821 MW049012
 2020-09-15 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0208/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACA1- C241T C1059T C1385T G1738T C3037T G3242A G6611T C11916T C14408T A16410G A23403G G25563T C28087T TGGCGG28912- AATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29865-

EPI_ISL_563747
 2020-09-15 2020-09-30
 Australia hCoV-19/Australia/VIC13549/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C9996T C14408T G16647T C17135T C18555T G22927T G22992A G23401A A23403G A28416T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563765
 2020-09-15 2020-09-30
 Australia hCoV-19/Australia/VIC13582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C9996T C14408T G16647T C17135T C18555T G22927T G22992A G23401A A23403G A28416T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563769
 2020-09-15 2020-09-30
 Australia hCoV-19/Australia/VIC13587/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T T1297C C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_563809
 2020-09-15 2020-09-30
 Australia hCoV-19/Australia/VIC13699/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- CG241TT A1163T C3037T G3860T T7540C C8152T A13974G C14408T C15352T G16647T C18555T C21812T G22992A G23401A A23403G G24992C G25249K A26162G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563823
 2020-09-15 2020-09-30
 Australia hCoV-19/Australia/VIC13748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC T28933Y TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563843
 2020-09-15 2020-09-30
 Australia hCoV-19/Australia/VIC13824/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T G2095R C3037T C5144T C7390T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_563857
 2020-09-15 2020-09-30
 Australia hCoV-19/Australia/VIC13857/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7279T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563861
 2020-09-15 2020-09-30
 Australia hCoV-19/Australia/VIC13871/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T C7390T T7540C C14408T G16647T C18555T A19068M T21925C G22992A G23401A A23403G A26759T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_566117
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD789/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5700A C13517T C14408T C22264T A23403G C28253T A28615T GGG28881AAC G29254T G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566127
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD66E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T A6502G C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566130
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD358/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C6286T C14408T G21255C C22088T C22227T A23403G C26801G C28932T G29645T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566131
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE06F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G944A T1947C C3037T C7528T C14408T C18877T G21867T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566136
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD81D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T8806C A9433T G10265A C14408T G15380T A19650G C21618T A23403G G23621T G26428T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566147
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCFCE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566164
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD7A7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5700A C13517T C14408T C22264T A23403G C28253T A28615T GGG28881AAC G29254T G29422T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566178
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD394/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T C23191T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566182
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCE0D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T G4006T C5170T C6286T G11132T C14408T G21255C C22227T C22264T A23403G T25202K C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566189
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD33A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C10931T C14408T C19269T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566227
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDB8D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566233
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDEB1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3885A G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566237
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD349/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A3174W C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566250
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD640/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T T16926C G21255C C22227T A23403G C26801G G27467C C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566252
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDAF9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A G27816T GGG28881AAC C29077T C29592T CACCGAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566280
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD75C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T A6502G C7528T C14408T C15981T C18129T C18877T C22444T A23403G A24862G G25563T C26735T C28807T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566297
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD74D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C5575T C6286T C14408T A15753G A19655G G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566328
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD65F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1590T C3037T A11120G C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566329
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDBAB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C T8053Y G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566342
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDEFD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T T1771A C1912T C3037T G4105T G4180T T10453C C11195T C14408T T16993C C21727T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566371
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDF18/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T T26495C GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566378
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD7C5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G8653T A9433T G10265A C14408T G15380T A17078G A19650G C21549T C21575T A23403G G23621T C27686T G27841T G28378C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566384
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD73E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4105T C4391A T4597G C4965T G11083T C11124T C14408T G14792T C15848T G19254T T19893C C20133Y G21624A A23403G T25655C C25889T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566417
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE17B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T A11781G C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567236
 2020-09-15 2020-10-01
 United Kingdom hCoV-19/England/QEUH-9C877F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541545 MW031061
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/IL-UW-1494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1385T G1738T C2710T C3037T G3242A C6720T G8642A C9438T G9929A C11916T C14408T A23403G G25563T C28087T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541546 MW031070
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/IL-UW-1503/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A A9085G C10319T C11956T C14408T C14805T A18081G A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541613 MW031049
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T C12885T T14191C C14408T C15654T G15658T C16092T C16260T A23403G G23900C A24253T G25563T G28681T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541616 MW031053
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1486/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4898A G6032A C7777T T12805C C14408T G21330T A23403G C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541617 MW031054
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1487/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A696C C3037T G3871T T3931C C6285T C14016T C14408T C15324T C19524T C20429T A23403G C28977T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541618 MW031056
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1489/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G174A C241T C1288T C3037T C3832T C11050T C13426T C14408T C14937T C21811T G21893A C22783T A23403G C24904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541619 MW031058
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T G1942T C3037T G8083A C8668T A9085G C10319T C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T T27555C C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541620 MW031059
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1492/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1076T C3037T T6023C C7609T T11418C C13119T C14408T C15810T A20268G A23403G G28881A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541621 MW031060
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1493/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C3773T C7086T T14191C C14408T G15672T C16092T C16260T G17721T G18985T C23185T A23403G G23900C A24253T C25460T G25563T G28727T C28821A G29808T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541624 MW031064
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1497/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A A9085G C10319T C14408T C14805T A18424G C21304T A23403G G23593T G25563T G25907T A26148G C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541632 MW031073
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4898A G6032A C7777T T12805C C14408T G21330T A23403G C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541636 MW031077
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1510/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T G10793A C14408T C14805T A18424G C21304T GG22343TT A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541637 MW031078
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A C10319T C14408T C14805T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541638 MW031079
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1288T C3037T C11050T C13426T C14408T C14937T C21811T G21893A C22783T A23403G C24904T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541639 MW031080
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G8083A A9085G C10319T C11956T C14408T C14805T C17518T A18424G C21304T A23403G G25563T G25907T C27964T C28472T C28869T G29402T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541641 MW031082
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4898A G6032A C7777T T12805C C14408T G19455A G21330T A23403G C27213T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_541644 MW031086
 2020-09-16 2020-09-22
 United States SARS-CoV-2/human/USA/WI-UW-1519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1076T C3037T C4582T T6023C C7609T T11418C C13119T C14408T C15810T A20268G C20629T A23403G G27637T G28881A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549334
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/England/NOTT-11336A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C G713A C3037T C6286T C14408T A21127G G21255C C22227T A23403G T26163C TT26485- C26801G G27877T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549497
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/England/NOTT-11333D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C8917T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23557T C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549498
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/England/NOTT-11334C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C8917T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23557T C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549499
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/England/NOTT-11335B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T A1250G C3037T G3251A T5278C G12067T C14408T C21575T C21637T C22227T G23282T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549500
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/England/NOTT-113379/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C8917T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23557T C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549502
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/England/NOTT-1133C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T G29737A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560226
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AF7F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G

EPI_ISL_560230
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AFF7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T T445C A1987G C3037T C3768T C6286T G6344T C14408T T20976C G21255C C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560232
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C24130T C26801G C27944T C28932T G29645T

EPI_ISL_560235
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B04E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C4421T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T TTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29858-

EPI_ISL_560237
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B06C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560238
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B07B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G ATT27579- C27944T C28087T C28932T G29645T

EPI_ISL_560247
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B12D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C24034T G25273T C26801G C27944T C28932T G29645T

EPI_ISL_560250
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B15A/2020
 ATTA1- G204T C241T T445C T511C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T A28792T C28932T G29645T

EPI_ISL_560256
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B1B4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC

EPI_ISL_560262
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B239/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560282
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B3AF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560302
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B55E/2020
 ATTAAAGGT1- G204T C241T T445C C3037T C4421T C6286T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_560304
 2020-09-16 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B57C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T

EPI_ISL_560819 MW049010
 2020-09-16 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0206/2020
 ATTAAAGGTTTA1- C16A C21T C241T C1059T C1385T G1738T C3037T G3242A G6611T C11916T C14408T A16410G A23403G G25563T C28087T TGGCGG28912- G29868T

EPI_ISL_560822 MW049013
 2020-09-16 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0209/2020
 ATTAAAGGTT1- C241T C1059T C1385T G1738T C3037T G3242A G6611T T11581A C11916T C14408T C21034T A23403G G25563T GC28086TT TGGCGG28912- C29420T GAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29864-

EPI_ISL_562726
 2020-09-16 2020-09-30
 Australia hCoV-19/Australia/VIC14097/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C G12067T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCACGCGGAGTACGATCGAGT29738- GC29773- ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563821
 2020-09-16 2020-09-30
 Australia hCoV-19/Australia/VIC13743/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C5144T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563829
 2020-09-16 2020-09-30
 Australia hCoV-19/Australia/VIC13764/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C G9738A G11083T C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563834
 2020-09-16 2020-09-30
 Australia hCoV-19/Australia/VIC13782/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C26768T C28253T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563835
 2020-09-16 2020-09-30
 Australia hCoV-19/Australia/VIC13784/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T C5144T G7328T T7540C C14408T A16172G G16647T C18555T T21369C G22992A G23401A A23403G G24348T T28009C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563929
 2020-09-16 2020-09-30
 Australia hCoV-19/Australia/VIC14014/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563938
 2020-09-16 2020-09-30
 Australia hCoV-19/Australia/VIC14031/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C5144T T7540C C9360Y C14408T G16647T C18555T T21925C C22329Y G22992A G23401A A23403G A26759T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563945
 2020-09-16 2020-09-30
 Australia hCoV-19/Australia/VIC14047/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563951
 2020-09-16 2020-09-30
 Australia hCoV-19/Australia/VIC14061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C T22729C G22992A G23401A A23403G A26759T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563954
 2020-09-16 2020-09-30
 Australia hCoV-19/Australia/VIC14071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563956
 2020-09-16 2020-09-30
 Australia hCoV-19/Australia/VIC14074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C T27483C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563960
 2020-09-16 2020-09-30
 Australia hCoV-19/Australia/VIC14081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_566110
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDB23/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566111
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDC99/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C12183T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566112
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD4DD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G C23557Y T24088C G25617T C25904T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566113
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDC6C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T C27494T G28655A GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566114
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCEC1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G6094T G11083T C13326T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566115
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD90B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T A11781G C14408T C20104T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566116
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE111/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C2156T C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G G25690T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566118
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD1B8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T T25202K C25276M C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566119
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCDA6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566120
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD8FF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G625T C3037T C13665T C14408T C15960T G16741T G20131A C20178T G20580T C21646T C21846T A23403G C24844A C26464T GGG28881AAC G29747T C29750T G29779T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566121
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDA9F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566122
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD08E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G6094T G11083T C13326T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566123
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD947/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T A11781G C14408T C20104Y G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566124
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDF45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G940A C3037T A3327G A3569G C3695T A6211G A8659G C8809T A9848G C13199A C14408T C15951T C18839T C19488T A23403G A25141R T25202K G25691T C26527T C28391T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566126
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDF09/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T A11781G C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566129
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCD79/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G18838T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566132
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDB6F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T A11533G C14408T G21255C C21614T C22227T A23403G C24334T T26424C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566133
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD130/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- CG203YT C241T T445C C2485T C3037T C6286T G11250A C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28253Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566134
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDC4E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T C20594T G21255C C22227T G22346T C22377T A23403G G25595T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566135
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD4EC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15342T C15981T T18488C C18877T C22444T A23403G C23481T G23868T G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566137
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCF82/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T A16373G G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566139
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDDC3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1758T C3037T C5575T C6286T C14408T A15753G A19655G G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566140
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDDF0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566141
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDCB7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2973T C3037T G10870T C14408T C15324T A23403G C25549T C28887T G28975T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566142
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCD1F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T A5431G G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C T27409C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566143
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD992/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T T11522G C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566144
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDFDC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T T13890C C14408T G21255C C22227T A23403G C26625T C26801G C27944T C28153T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566145
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCF37/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T G12907A C13667T C14408T G16396T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566146
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCD97/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T A20599C G21255C C22227T A23403G T25202K C25207T C26801G C27944T G28371T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566148
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD552/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566149
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD07F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T G9479T C14408T C18877T T22261G C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566150
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD491/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566151
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD6AA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C27661T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566153
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD58F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566154
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD40A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T T16993C G18859T G21624T A22194G A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566155
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDCA8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C1912T C3037T C4113T C8683T C14408T G15406T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566156
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD69B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A2647G C3037T T3256C G3638T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566157
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD5BC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C G2764T C3037T C6286T C9073T C14408T G21255C C22088T C22227T A23403G C26801G C28932T G29645T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566159
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDA26/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4582T C8655T C14408T C21637T C22550T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566160
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD6D7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T A10978T T13545Y C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566161
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD24C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T T9115A G10886A C14408T G17278T C18032T G18105T G18662C A23403G C23625T A25910G C26151T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566162
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD5E9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15342T C15981T T18488C C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566163
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD77A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A2647G C3037T T3256C G3638T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566166
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD16D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566167
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222Y C241T T445Y T1947Y C3037T C6286Y C7528Y C7834Y G9211K G11083K C14408T C15981Y C18877Y T20661Y G21255S C22227Y C22444Y A23403G G25563K C26735Y C26801S C27263Y C28011Y C28854Y C28932Y C29366Y C29386Y G29508K C29555Y G29645K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566168
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDD5A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T C22323T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566169
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCDE2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A3210G C6286T G6553A C7926T C9745T C13329T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566170
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD68C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C27661T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566171
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDD78/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T C22323T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566172
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD121/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9559T G11230T G11401T C14408T A23403G T24088C G25617T C25624T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566174
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD534/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C745T C3037T G3323T G3701A C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566175
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDB05/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204K C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC TC28889CT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566176
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C6541Y C8318A C10615T C14408T T16993C G18859T G21624T A22194G A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566177
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDC02/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1468G C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566179
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD9ED/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G25785T A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566180
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD8C2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566181
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD060/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566183
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE199/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C7528Y G11230T C13381T C14408T C17934A A23403G T24088C G25617T GGG28881AAC G29511T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566184
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD2D3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1158A T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566185
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDA71/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T G16377K C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566186
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD631/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C15981T C18877T C22444T A23403G C24621T G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566187
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD710/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1057T C3037T C6286T C11396T C11747T C14408T G21255C C21614T C22227T A23403G A25050G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566188
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD5AD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C G2764T C3037T C6286T C9073T C14408T G21255C C22088T C22227T A23403G C26801G C28932T G29645T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566190
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD9DE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C4331T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566191
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD18B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T G22793T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566192
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C8660T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566193
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD2B5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566195
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE07E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5884T A7522G T14171C C14408T T17040C C19263T A23403G G23868T C26060T C28045T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566196
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD446/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C1480T C3037T C6286T C13019T C14408T T20661C G21255C C21762T C22227T A23403G G23608T C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566197
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD437/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A G11055T T14232C C14408T C19859T C21575T C21637T C22227T A23403G C23525T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566198
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD84A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C1593T C1710T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C21648T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566199
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD7B6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566200
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD3EF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T A1386G C3037T T3256C C5622T G10870T G11083T C11345T G14202T C14408T G16549A G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566202
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDCF3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C8917T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28453T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566203
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDE57/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566204
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C4327Y C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566205
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD006/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C21897T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566206
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD1D6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566207
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCF28/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G6094T G11083T C13326T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566208
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD613/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566210
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCEEF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G6094T G11083T C13326T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T A29697W CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566211
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDEDF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C T25202K G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566212
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDA62/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566213
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE14E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1590T C3037T C10039T A11120G C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566214
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD015/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C7926T C9745T T11522G C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566215
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDC20/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566216
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDB14/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C6286T C14408T G21255C C22088T C22227T A23403G C26801G C28932T G29645T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566217
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD419/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C455T C3037T C6286T C14408T G21255C G22205T C22227T A23403G C26801G C28310A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566218
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDE2A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566219
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/Wales/ALDP-9CD367/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T G10364A C14408T A15477T C18395T AGA20622TTT G22785A A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566220
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDE1B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T C20178T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566221
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDDD2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C3157T G3328T G4006T C5170T C6286T C10228T G11132T C14408T G18105C G21255C C22227T A23403G C26801G G27967T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566222
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD200/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T C21637T C21707T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566223
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD473/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C A1987G T2698C C3037T C6286T C14408T T14721C G21255C C22227T A23403G T25519G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566224
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE18A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A3210G C6286T G6553A C7926T C9745T C13329T C14408T G21255C C22227T C22987Y A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566225
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD8D1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2421G C3037T C8683T C14408T G15406T C18657T C21618T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566226
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCEB2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G11083T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566228
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDC7B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C9565Y C12183T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28253Y C28256Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566229
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD6B9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A21137G A23403G T26816C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566230
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD17C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15480T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566231
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDE48/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G T25202K GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566234
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCFBF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G6094T G11083T C13326T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566235
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD2F1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7165T C8950T C12525T C14408T C14571T G19648T A20268G T21158C C22978T A23403G C28854T A29617G G29745T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566236
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD701/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T A11781G C14408T G21255C C22227T A23403G C25614T C26801G C27944T G28580T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566238
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/Wales/ALDP-9CCF0A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566239
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD622/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3099T C14408T G19816A A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566240
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD30D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T A11533G C13517T C14408T G21255C C21614T C22227T A23403G C24334T G26233T T26424C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566241
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDE75/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C6525T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566242
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCDD3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T C15279T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566243
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T T13954C C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566244
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDD69/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C8917T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28453T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566245
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDEC0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566246
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD21F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C14408T G14792T C15848T C16289T G18149T G19254T T19893C A23403G C25889T C26058T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566247
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD9B0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C8290T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G28903T G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566249
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCD2E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T G27602T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566251
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD9A1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566253
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCDF1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A3210G C6286T G6553A C7926T C9745T C13329T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566254
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDB50/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566255
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD385/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2455Y C3037T C5170T C6286T G11132T C14408T G21255C C22227T A23403G G26620T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566256
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDD0F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T A20599C G21255C C22227T A23403G T25202K C25207T C26801G C27944T G28371T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566257
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD1C7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G2648T C3037T C8683T C14408T G15406T A21137G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566258
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD4A0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C15540Y G21255C C21614T C22227T A22504R A23403G C24334T C26801G G27754T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566259
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD868/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4291T C8683T C14408T G15406T C16260T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566260
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCE85/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C19032T G19542T C19718T C22388T A23403G G25630C C26060T G26918T T28144C GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566261
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C TGGTTG519- C2973T C3037T C6286T G9805T C14408T T17043C A20599C G21255C C22227T A23403G C25207T C26801G C27944T G28371T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566262
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD428/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T A23403G GGG28881AAC C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566263
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD0E8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1738T A2920G C3037T G3392A C4927T G6352T C9246Y C9693T C14408T C18744T T19839C A23403G C23422T T25202K G25320T G25440T GGG28881AAC G29405C G29734T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566264
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDBC9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1590T C3037T C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566265
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDBE7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T T25202K C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566266
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDA35/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C9559T G11230T G11401T C14408T A23403G T24088C T25202K G25617T A28389T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566267
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDAAE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T A11533G C14408T G21255C C21614T C22227T A23403G C24334T T26424C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566268
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD938/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T C9891T C10369T C14408T G18674A A23403G T25202K G26526T C27005T A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566269
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD0D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1191T C3037T G3251A T5278C G12067T C14408T C16726Y C21575T C21637T C22227T G23282T A23403G C23525T C28087M A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566270
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD22E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C2156T C3037T C6286T C14408T G21255C C21614T C21714T C22227T A23403G G25690T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566271
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE15D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566272
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDF54/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566273
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDE66/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1541T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566274
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCEFE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T CGA26192- GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566275
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDA08/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T C17123T G19542T C19718T C22388T A23403G C26060T C27925A GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566277
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD1F4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C14408T G15406T T19404A C21637T A23403G G25302T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566278
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDE84/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566279
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD3B2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C8664Y C9745T T13890C C14076A C14408T G16377T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566281
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD3A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T A3305C C6286T C14408T T14568C G21255C C22227T A23403G G25526T C26801G C27847T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566282
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD4BF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566283
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDFAF/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G4300T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566284
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD8E0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566285
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCE3A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1142T C3037T C6286T C6807T C7926T C9745T C14408T G21255C G22014T C22227T A23403G C25831T C26801G G26918K C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566286
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE032/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C4012T C6286T G8942K C9745T C12312T C14408T G21255C T22087Y C22227T A23403G C25624T C26801G G26946S G27147T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566287
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE0D8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T C17138T C22624T G22992T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566288
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE0C9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A3405G C6286T C10448T C14408T G21255C C21614T C22227T C22664T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566289
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD482/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566290
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDD87/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1419T C3037T C4158T C8318A C10615T C14408T G18859T G21624T A23403G C26571A GGG28881AAC C29077T C29592T CACCGAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566291
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDE39/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T C20178T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566292
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCDC4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7119T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566294
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE0BA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C13329T C14408T C19688T A23403G T24088C C24174T G24812T G25617T A26760T GGG28881AAC A29389T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566295
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDF72/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566296
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDD2D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T G13850K C14408T G21255C C22227T G22346T C22377T A23403G T25202K C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566298
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD974/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C1884T C3037T G9802T G12067T C14362T C14408T T16224C A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566299
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCE76/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C7834T C14408T T20661C G21255C C22227T A23403G C26801G T27484C C28011T C28932T C29366T C29386T G29508T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566300
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD895/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C1593T C1710T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C21648T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566301
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD72F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T T7767C C8047T G9856T A10978T C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G T25202K G25320T G25785T A26264G A26664G G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566302
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDD4B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2973T C3037T C6286T G9805T C14408T A20599C G21255C C22227T A23403G T25202K C25207T C26801G C27944T G28371T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566303
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD965/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4543T G5629T G9526T C11497T G13993T C14408T G15766T A16889G C16954Y G17019T C18877T G22992A A23403G G25563T C25710T C26735T T26876C G28975C G29399A G29427A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566304
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE0AB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T C7002Y G10870T C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T C29696T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566305
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD76B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2470Y C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566306
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD67D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566307
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD91A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566308
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCF91/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G6094T G11083T T12589Y C13326T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566309
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD0F7/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T G9479T G11906R C14408T C18877T T22261G C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566310
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD7F2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1142T C3037T C4002T C6286T C6807T C7926T T9205C C9745T C14408T G14718A G21255C C22227T A23403G C26801G G27790A C27944T G28368A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566311
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566312
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDF90/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC G29737K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566313
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD455/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T G4232T C7528T C14408T C18877T C22444T A23403G T25202K G25563T C26735T C28507Y C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566315
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD2A6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566316
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD7E3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566317
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCF64/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G587A G1590T C3037T G4694T C6336T A11120G C14408T C16349T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566318
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD14F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566319
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCD6A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C8917T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28453T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566320
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDF36/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T G22992T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566321
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD7D4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566322
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCEA3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T C4433M G9802T G12067T C14408T G22344T A23403G GGG28881AAC C29518T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566323
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDA80/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1590T C3037T A11120G C14408T A23403G G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566324
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDBF6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T G28541K GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566325
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD15E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T T11731C C14408T C16260T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566326
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD507/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C7834T G9211T C14408T T20661C G21255C C22227T A23403G C26801G C28011T C28932T C29366T C29386T G29508T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566327
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCFDD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566330
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD376/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T A3305C C6286T C14408T T14568C G21255C C22227T A23403G G25526T C26801G C27847T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566331
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3602T G6352T C6941T C8047T C14408T C15324T A16044T G21295T C21855T A23403G A25505G T25640C G25906C G25996T C28651T C28869T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566332
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE08D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T C13170T C14408T G15406T G16912T C21637T A23403G CACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCAC27557- A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566333
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD9FC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C6286T C14408T G21255C C22088T C22227T A23403G C26801G C28932T G29645T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566334
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDDA5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566335
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCFA0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T T13890C C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566336
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDD96/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566337
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDEA2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566338
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDAEA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G11083T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T C29268Y CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566339
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD543/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1541T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566340
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDF81/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C5312T C5693A C6120T C8320T G11230T C14408T A23403G C23707Y T24088C G25617T A26760T GGG28881AAC G29543K CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566341
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDC11/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4391A C11124T C13860T C14408T G14792T C15848T C16289T G18149T G19254T T19893C C21622A A23403G C25889T GGG28881AAC C28905T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566343
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T T25202K C26801G C27769T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566345
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCFFB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T T25202K C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566346
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDC5D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T C20594T G21255C C22227T G22346T C22377T A23403G G25595T C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566347
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD1A9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8683T C14408T G15406T C21637T G22793T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566349
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD23D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2941G C3037T T3710G C5654T C6033T T6649W C14408T G18703T G22468T A23403G G24193T T24763C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566350
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD8B3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566351
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDEEE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A3210G C6286T G6553A C7926T C9745T C13329T C14408T G21255C C22227T C22987T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566352
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD983/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C1884T C3037T G9802T G12067T C14362T C14408T C15277T T16224C A21137G A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566353
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD5F8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T C19572T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566354
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD4CE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3323T C5183T T8011C C9891T C10369T C14408T G18674A A23403G A28860G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566355
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDE0C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C1513T C3037T C6286T C14408T G21255C C22227T G22346T C22377T A23403G C26801G C28706T C28932T C29095T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566356
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD19A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T T25202K C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566357
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G3614A T7767C C8047T C11835T G12988T C14408T G15598A C17104T G18028T A20268G TACATG21765- G21800T C22879A A23403G T24910C G25494T T26972C C27800A G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566358
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDA44/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T C8917T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C28453T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566359
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDACC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5554T C5869T G9130T A9946G C14408T T18954A G19891T C21575T C22938A A23403G C24034T G25249T C25487T G26152T C27532T G28321T GGG28881AAC C29614T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566360
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD82C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C14408T C18877T C22444T A23403G G25563T C26735T G27602T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566361
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD5DA/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566362
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCD4C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C C3037T C6286T C14408T G21255C C22088T C22227T A23403G C26801G C27769Y C28932T G29645T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566363
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDA17/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T C11868T C14408T C15342T C15981T T18488C C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566364
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDE93/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T C14408T C18981T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566365
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDD3C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C7732Y G10886A A11856C C14408T G17278T C18032T G18105T G18662C G20756T A23403G C23625T C25624T A25910G GGG28881AAC TACGATCGAGTGTACAGTGAACAA29748- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566366
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD3D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T5507A C7113T C9803T G11083T C12493A T14100C C14408T C16349T A20268G T20988C C21614T G21778A A23403G G25290T C28846T C28854T C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566367
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD886/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4291T C8683T C14408T G15406T C16260T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566368
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDB9C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G20489T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566369
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDDE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566370
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDADB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T T7227G C14408T G21255C C22227T A23403G G25049T G25062T T25202K C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566372
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD604/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G210T C241T C1225T C3037T C13421Y C14408T G17280T C18647T C18877T C22444T A23403G G24712C G25563T T26374C C26735T C28854T G29392T G29737T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566373
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD83B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C832T C1593T C1710T G3004T C3037T C4002T C4890T G8353A T9289C G10097A C13536T C14408T C21648T C22326T A23403G C23731T G24781T C27513T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566374
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD6E6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4291T C8683T C14408T G15406T C16260T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566375
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDFEB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C6040Y T7767C C8047T T8110C G12988T C14408T G15598A C16394T C17104T G18028T A20268G TACATG21765- C22127T C22879A A23403G G23876A T24910C G25947T T26972C C27800A C29274T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566376
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2201Y C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566377
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD1E5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566379
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD2C4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T C15279T A23403G T24088C G24368T G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566380
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCED0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G6094T G11083T C13326T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566381
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDB32/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C904T C3037T C8664Y C8683T C14408T G15406T C17746T C21637T A23403G G23426T A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566383
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD4FB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1464A C3037T C7267T T7767C C8047T A10978T A11623G C14408T C16469T C17104T G18803T A20268G T20799C C21635T C22879A A23403G G25320T G29734C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566385
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCCF4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T G11401T C14408T A22296G A23403G T24088C G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566386
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE09C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T A11781G C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566387
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE1A8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T A3210G C6286T G6553A C7926T C9745T C13329T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566388
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD877/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T A4291T C8683T C14408T G15406T C16260T A19960G C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566389
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD570/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G C26801G C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566390
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDABD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C10834T C14408T C16111T G21255C C21614T C22227T A23403G C24334T C26801G G27271T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566391
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD6C8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1912T C3037T C11224T G11230T G11401T C14408T A16550G A23403G T24088C G25617T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566392
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDCE4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8683T A13928G C14408T G15406T C17977Y C21637T A23403G A28169G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566393
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD09D/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566394
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD80E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C4455T C6286T C14408T G21255C C22227T A23403G G25049T G25062T T25202K C26801G C28657T C28932T C29366T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566395
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCF46/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1342T C3037T T5507A G6094T G11083T C13326T T14100C C14408T A20268G C21614T A23403G C28846T C28854T T28978C C29167T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566396
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCF73/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C G3340T C5622T G10998A G11083T G14202T C14408T G19542T C19718T C22388T A23403G C24374T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566397
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCF55/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C1142T C3037T C6286T C6807T C7926T C9745T C14408T G21255C G22014T C22227T A23403G C25831T C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566398
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD6F5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C66T C241T T445C A1987G C3037T C6286T G10870T C14408T G21255C C22227T A23403G C25614T C26801G C27944T C28932T G29645T C29696T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566399
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDF27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C3157T G3328T G4006T C5170T C6286T G11132T C14408T G18105C G21255C C22227T A23403G C26801G G27967T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566400
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD798/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12115Y C14408T A23403G G25563T A27241G A27932G GGG28881AAC G29705T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566401
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDC3F/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C815T C3037T G11230T G11401T C14408T C21110Y A23403G T24088C G25617T A27965W GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566402
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDBD8/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C222T C241T T445C C3037T C6286T T10573Y C14408T T20661C G21255C C22227T A23403G C26801G C28932T C29366T C29386T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566403
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD516/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C2727Y C3037T G4006T C5170T C6286T G11083K G11132T A11736M C14408T G21255C C22227T A23403G C26801G C28253Y C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566404
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD8A4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059Y T1947C C3037T C7528T C8660T C14408T C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566405
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCF19/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C G3340T C5622T G10998A G11083T G14202T C14408T G19542T C19718T C22388T A23403G C24374T C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566406
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDB7E/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T4732C G11230T G11401T C14408T A23403G G25617T GGG28881AAC CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGG29730- CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566407
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD112/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C337T A1163T C3037T T3256C C5622T G11083T C11249T G14202T C14408T G19542T C19718T C22388T A23403G C26060T C27661T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566408
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD26A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C6286T C14408T G21255C C22227T A23403G G25049T G25062T T25202K C26801G C28657T C28932T C29366T G29645T G29690T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566409
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDF63/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C4012T C6286T C9745T C14408T G21255C C22227T A23403G C26801G G27147T C27944T C28932T G29645T G29764T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566410
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD0BB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T C7528T G12137T C14408T C15342T C15981T T18488C C18877T C22444T A23403G G25563T C26735T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566411
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD2E2/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T1947C C3037T T4667G C7528T C10228T G12067T C14408T C14889T C18744T C18877T G21867T C22444T A23403G G25563T C26735T C27427T C28854T C29555T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566412
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDDB4/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566413
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDB41/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC TC28889CT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566414
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCE67/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T3256C C5622T G14202T C14408T C15017T C17678T G19542T C19718T T21773C C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566415
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD31C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C10369T C13536T C14408T A17063G C21998T A23403G C23731T C27513T GGG28881AAC TC28889CT CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566416
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CDFCD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G11230T C14408T A19175T A23403G T24088C G25617T A26760T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566418
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T2201C C3037T T5507A C7165T C8950T C12525T C14408T G19648T A20268G T21158C A23403G C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566419
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CCE58/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C1625T C3037T T3256C C4331T C5622T G11083T G14202T C14408T G19542T C19718T C22388T A23403G C26060T GGG28881AAC G29227T C29466T A29771G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_566420
 2020-09-16 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CD5CB/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A408G T445C G2764T C3037T C6286T C9073T C14408T G21255C C22088T C22227T A23403G T25202K C26801G C28932T G29645T C29686T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_568676
 2020-09-16 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1578/2020
 AT1- C241T C1059T C3037T C10319T C14408T C17766T A18424G C21304T G21867T C22594A A23403G G25563T G25907T C27964T C28472T C28869T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_568678
 2020-09-16 2020-10-02
 United States hCoV-19/USA/FL-BPHL-1580/2020
 ATTAAAG1- C241T C2416T C3037T C3602T T6274C C6310T G11596T C14408T A16455C C16616T G16901A C20740A A23403G G25563T C26885T C27603T G28681T C28887T C29353T TTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29855-

EPI_ISL_538498
 2020-09-17 2020-09-17
 Indonesia hCoV-19/Indonesia/JI-NIHRD-PME0999/2020
 A1- C241T C3037T C14120T C14408T C18877T C22000T A23403G G25563T C26735T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_538499
 2020-09-17 2020-09-17
 Indonesia hCoV-19/Indonesia/JI-NIHRD-PME2054/2020
 C241T C3037T C14120T C14408T C18877T G19117T A23403G G25563T C26735T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_538500
 2020-09-17 2020-09-17
 Indonesia hCoV-19/Indonesia/SU-NIHRD-PME4745/2020
 ATTAAA1- C241T G2891A C3037T C6449T C10202T C11916T T14059C C14408T C18877T C22444T A23403G G25563T C26735T G28077T TATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29832-

EPI_ISL_538501
 2020-09-17 2020-09-17
 Indonesia hCoV-19/Indonesia/SU-NIHRD-PME4760/2020
 A1- C241T G2891A C3037T G11083T C11208T C14408T C18877T C22444T A23403G G25563T C26735T G28077T C29837T TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_538502
 2020-09-17 2020-09-17
 Indonesia hCoV-19/Indonesia/KT-NIHRD-PME4206/2020
 AT1- C241T C3037T C6037T G9738T A11090T C14408T G16861A C18877T A23403G G25563T C26735T TAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29859-

EPI_ISL_538503
 2020-09-17 2020-09-17
 Indonesia hCoV-19/Indonesia/BA-NIHRD-PME3926/2020
 ATTAAA1- C241T C3037T C14408T C19718T A23403G GGG28881AAC ATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29819-

EPI_ISL_538511
 2020-09-17 2020-09-17
 Indonesia hCoV-19/Indonesia/JI-NIHRD-PME5011/2020
 AT1- C241T C936T C1102T C3037T G3639A G4124A C14408T G16365T C18877T A23403G G25563T C26735T G27877T C28854T C29718T AGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29863-

EPI_ISL_538513
 2020-09-17 2020-09-17
 Indonesia hCoV-19/Indonesia/JB-NIHRD-PME4992/2020
 ATTAAA1- C241T C3037T C5184T C12970T G14118T C14408T G15226A C18828T C18877T A23403G G25563T C26735T C27998T G28851T G29868TCATTCTGC A29873G AA29875GT AAAAAAAAAAAAAAAAAAAAAAAAAA29878-

EPI_ISL_549503
 2020-09-17 2020-09-28
 United Kingdom hCoV-19/England/NOTT-11341C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549504
 2020-09-17 2020-09-28
 United Kingdom hCoV-19/England/NOTT-11342B/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C8917T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23557T C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559918
 2020-09-17 2020-09-28
 United Kingdom hCoV-19/England/SHEF-C7849/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T62C G204T C241T T445C C3037T C6286T C14408T G21255C C21614T C22227T A23403G C24334T C26801G G27754T C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559934
 2020-09-17 2020-09-28
 United Kingdom hCoV-19/England/SHEF-CE350/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T AAGTCATTT686- G1210T C3037T G9802T G12067T G12907A C13667T C14408T A23403G G25687A GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_559936
 2020-09-17 2020-09-28
 United Kingdom hCoV-19/England/SHEF-CE4F3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2471T C3037T T5507A C7165T C8950T C12525T C14408T C14571T G19648T A20268G T21158C A23403G T27384C C28854T A29617G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560225
 2020-09-17 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16AF60/2020
 ATTAAAGGTTTATACC1- G204T C241T T445C C3037T C6286T C8683Y G11083K C14408T C15480T G21255C C21614T C22227T A23403G C26801G C27944T C28932T G29645T C29679T

EPI_ISL_560279
 2020-09-17 2020-09-28
 United Kingdom hCoV-19/Wales/PHWC-16B372/2020
 G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T

EPI_ISL_560823 MW049014
 2020-09-17 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0210/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAA1- C241T C1059T C3037T C3811T G4444T G8083A C10319T G11083T C14408T C14805T A18424G T19311C C21304T A23403G G25563T C27964T C28472T C28869T ATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29866-

EPI_ISL_560824 MW049015
 2020-09-17 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0211/2020
 ATTA1- C241T C1059T C3037T C3811T G4444T G8083A C10319T G11083T C14408T C14805T A18424G T19311C C21304T A23403G G25563T G25907T C27964T C28472T C28869T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560825 MW049016
 2020-09-17 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0212/2020
 C241T C1059T C3037T C3811T G4444T G8083A C10319T G11083T C14408T C14805T A18424G T19311C C21304T A23403G G25563T G25907T C27964T C28472T C28869T GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29868-

EPI_ISL_560826 MW049017
 2020-09-17 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0213/2020
 ATTAAAGGTTTATACCTTCCCAGGTAAC1- C241T C1059T C3037T C3811T G4444T G8083A C10319T G11083T C14408T C14805T A18424G T19311C C21304T A23403G G25563T C27964T C28472T C28869T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560827 MW049018
 2020-09-17 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0214/2020
 AT1- C241T C1059T C3037T C3811T G4444T G8083A C10319T G11083T C14408T C14805T A18424G T19311C C21304T A23403G G25563T C27964T C28472T C28869T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560828 MW049019
 2020-09-17 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0215/2020
 A1- C241T C1059T C1385T G1738T C2485T G2635A C3037T G3242A G6611T C8175T C11916T C14408T A23403G G25563T C28087T TGGCGG28912- AAAAAAAA29896-

EPI_ISL_560829 MW049020
 2020-09-17 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0216/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C28T C241T C1059T C3037T G3242A C3264T C14408T C15579T C16260T C18267T A20003G C21846T A23403G G23426T GC25266TT G25563T C25782T G26690T C28821A C29353T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_563863
 2020-09-17 2020-09-30
 Australia hCoV-19/Australia/VIC13881/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T T1297C C3037T A3186M T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563901
 2020-09-17 2020-09-30
 Australia hCoV-19/Australia/VIC13968/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5144T T7540C C8937T C14408T G16647T G18148T C18555T T21925C C22329Y G22992A G23401A A23403G A26759T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563927
 2020-09-17 2020-09-30
 Australia hCoV-19/Australia/VIC14011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C506T A1163T C3037T C7600T G7798T C14408T A23403G T23548C GGG28881AAC T29760Y TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_563942
 2020-09-17 2020-09-30
 Australia hCoV-19/Australia/VIC14041/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T C21774Y A22489W G22992A G23401A A23403G A27024C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563948
 2020-09-17 2020-09-30
 Australia hCoV-19/Australia/VIC14057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C T27483C GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563957
 2020-09-17 2020-09-30
 Australia hCoV-19/Australia/VIC14075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C12116T C14408T G16647T C18555T C21516T G22992A G23401A A23403G A27024C T27483C GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_566138
 2020-09-17 2020-10-01
 United Kingdom hCoV-19/England/ALDP-9CE005/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549505
 2020-09-18 2020-09-28
 United Kingdom hCoV-19/England/NOTT-113449/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549506
 2020-09-18 2020-09-28
 United Kingdom hCoV-19/England/NOTT-113485/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C8917T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23557T C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_560830 MW049021
 2020-09-18 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0217/2020
 T13C C241T C3037T G3871T C14408T A18735G A20268G TGG21294AAA A22135G A23403G C25626T C28854T G28899T AAAAAAAAAAAAAAAAA29887-

EPI_ISL_560831 MW049022
 2020-09-18 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0218/2020
 A1- A4G C241T C1059T C1385T G1738T C3037T G3242A G6611T T11581A C11916T C14408T C21034T A23403G G25563T C28087T TGGCGG28912- C29420T TGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29867-

EPI_ISL_560832 MW049023
 2020-09-18 2020-09-29
 United States SARS-CoV-2/human/USA/MD-MDH-0219/2020
 ATTAA1- C241T G2155T C3037T T9172C A10948G C10977T C14408T G17632T A22102G A23403G C23604A A24874G G26730T A26927T G28451C GGG28881AAC G29736T C29870G

EPI_ISL_563893
 2020-09-18 2020-09-30
 Australia hCoV-19/Australia/VIC13959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563909
 2020-09-18 2020-09-30
 Australia hCoV-19/Australia/VIC13984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C5144T T7540C C8937T C14408T G16647T G18148T C18555T T21925C C22329Y G22992A G23401A A23403G A26759T GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_563923
 2020-09-18 2020-09-30
 Australia hCoV-19/Australia/VIC14008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C5144T T7540C C14408T C15540T G16647T C18555T T21925C G22992A G23401A A23403G C25626Y A26759T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563947
 2020-09-18 2020-09-30
 Australia hCoV-19/Australia/VIC14056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C5144T C7390T T7540C C14408T G16647T C18555T T21925C G22992A G23401A A23403G A26759T GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563965
 2020-09-18 2020-09-30
 Australia hCoV-19/Australia/VIC14100/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T T1297C C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563966
 2020-09-18 2020-09-30
 Australia hCoV-19/Australia/VIC14101/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T T1297C C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563967
 2020-09-18 2020-09-30
 Australia hCoV-19/Australia/VIC14102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T T1297C C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC A29006R TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563968
 2020-09-18 2020-09-30
 Australia hCoV-19/Australia/VIC14103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T T1297C C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29839-

EPI_ISL_563969
 2020-09-18 2020-09-30
 Australia hCoV-19/Australia/VIC14104/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T T1297C C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563970
 2020-09-18 2020-09-30
 Australia hCoV-19/Australia/VIC14106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T T1297C C3037T T7540C C14408T G16647T C18555T G22361R G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_549507
 2020-09-19 2020-09-28
 United Kingdom hCoV-19/England/NOTT-1134A3/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C8917T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23557T C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549508
 2020-09-19 2020-09-28
 United Kingdom hCoV-19/England/NOTT-1134D0/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T C3037T C5944T G7846A G10886A C14408T G17278T C18032T G18105T G18662C G19669A A23403G C23625T A25910G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549509
 2020-09-19 2020-09-28
 United Kingdom hCoV-19/England/NOTT-1134FE/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T T7831A C7926T C9745T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549510
 2020-09-19 2020-09-28
 United Kingdom hCoV-19/England/NOTT-11350A/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C2416T C3037T G8371T C8917T C9430T C14408T A15477T C18395T AGA20622TTT A23403G C23557T C23730T G25563T A26319G C28854T G29044A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549511
 2020-09-19 2020-09-28
 United Kingdom hCoV-19/England/NOTT-113519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5184T C6286T C14408T G21255C C22227T A23403G C26801G C28310A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549512
 2020-09-20 2020-09-28
 United Kingdom hCoV-19/England/NOTT-113555/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T T13890C C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549513
 2020-09-20 2020-09-28
 United Kingdom hCoV-19/England/NOTT-113564/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T A11533G C14408T G21255C C21614T C22227T A23403G C24334T T26424C C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549514
 2020-09-20 2020-09-28
 United Kingdom hCoV-19/England/NOTT-113573/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T445C C3037T C5184T C6286T C14408T G21255C C22227T A23403G C26801G C28310A C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549515
 2020-09-20 2020-09-28
 United Kingdom hCoV-19/England/NOTT-113582/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C6807T C7926T C9745T G13618T C14408T G21255C C22227T A23403G C26801G C27944T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549516
 2020-09-20 2020-09-28
 United Kingdom hCoV-19/England/NOTT-113591/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1210T C3037T G9802T G12067T C13667T C14408T G15957T A23403G AT27865TA GGG28881AAC T29785A CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547454
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/FL-RIVM-10132/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC T29128C G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547459
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/GE-RIVM-10075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C23086T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547466
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/GR-RIVM-10074/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C C17410T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547467
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/GR-RIVM-10081/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C C17410T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547468
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/GR-RIVM-10089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547471
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T C24421T G25979T C27752T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547472
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/LI-RIVM-10106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G3731A C8782T T9477A C14805T G20469A G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547487
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14396T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547488
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10085/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C8782T T9477A C14805T G25979T T28144C C28657T C28863T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547489
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C C17410T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547490
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/NB-RIVM-10087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C C16762T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547500
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/NH-RIVM-10102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A2480G C2558T C4423T A5133C G11083T C14805T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547510
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/OV-RIVM-10136/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- A5791C G11083T C14358T C14805T C20312T T25081C G26144T C28093T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547512
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/OV-RIVM-10149/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1594T C2334T C3037T C7164T C11109T C14408T G20489T A23403G G25563T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547523
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T658C C3037T C12525T C14318T C14408T G22201T A23403G A24862G C28629T C29253T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547530
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10120/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T C19170T G19509A A23403G C26313T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547535
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10129/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC T29128C G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547540
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10153/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547542
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10155/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547543
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10156/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547544
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10157/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C3903T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547545
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10158/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C7528T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547546
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10159/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547547
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10160/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A G27281T C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547548
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10161/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T C14741T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547549
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10162/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T G19117T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547550
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10163/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547551
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10164/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T G1181T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A G28086T C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547552
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10165/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547553
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10166/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17679T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547554
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10167/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547555
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10168/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C9246T C11109T C11950T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547556
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/UT-RIVM-10169/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C392T C1594T G2527A C3037T C5512T C9246T C11109T C12415T C14408T G17790T T19159G C21145A A23403G G25563T G25565A C28171T G28655T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547561
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10099/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547562
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10110/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- T514C T1606C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547563
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10116/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5572T C14408T G15438T G17671T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547564
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10117/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C14408T A23403G GGG28881AAC C29585T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547565
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10118/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T10561C C14408T C15324T A23403G C28844T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547566
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10126/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G13564T C14408T A23403G C27046T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547567
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10127/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C27046T GGG28881AAC T29128C G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547568
 2020-09-24 2020-09-24
 Netherlands hCoV-19/Netherlands/ZH-RIVM-10133/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T T6949G C14408T A23403G C27046T GGG28881AAC T29128C G29751C CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_567403
 2020-09-24 2020-10-01
 United Kingdom hCoV-19/Wales/QEUH-9CA009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G204T C241T T445C C3037T C6286T C11396T C14408T G21255C C21614T C22227T A23403G G25720T C26801G C27944T G28001T C28932T G29645T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547996
 2020-09-25 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0102/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547997
 2020-09-25 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0103/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547998
 2020-09-25 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0105/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_547999
 2020-09-25 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0106/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548000
 2020-09-25 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0108/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548045
 2020-09-25 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20CV0176/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C11665T C13536T C14408T T15867G A23403G C23731T C25685T GGG28881AAC GGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29778-

EPI_ISL_548100
 2020-09-25 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20VR3916/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4002T G10097A C13536T G13835T C14408T T15867G A23403G C23731T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548141
 2020-09-25 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20VR3848/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C1385T G1738T C3037T G3242A C11916T C13536T C14408T A23403G G25563T C28087T G29332T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548142
 2020-09-25 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20VR3852/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C313T AAGTCATTT686- C3037T C5700A C9693T C10815T C14408T C16626T A23403G G25269T GGG28881AAC A29086G G29474T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548143
 2020-09-25 2020-09-25
 New Zealand hCoV-19/New Zealand/AUK-ESR-20VR3859/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C4795T C13051T C14408T C15480T C21597T G22205T A23403G GGG28881AAC C29144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_548687
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00004/2020
 ATTAAAGGTTT1- C241T C1059T C3037T C6578T C14408T A23403G G25563T TTCTTA27695- G28368A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548691
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00008/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T1116C C3037T C14408T A23403G T27299C G28396A GGG28881AAC T29148C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548692
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00009/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T T1116C C3037T C12053T C14408T A23403G T27299C G28396A GGG28881AAC T29148C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548693
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00010/2020
 ATTAAAGGTTTATACCTTCCCAG1- C241T C1059T C3037T C5312T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548694
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C5312T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548695
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00012/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5312T C14408T A23403G G23782T G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548696
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00014/2020
 ATTAAAGGTTTATACCTTCCCAGG1- C241T C1059T C3037T C5312T C14408T A23403G G23782T G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548697
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00015/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C5312T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548698
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00016/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T T1116C C3037T C14408T A14413T A23403G T27299C G28396A GGG28881AAC T29148C CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548699
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00018/2020
 ATTAAAGGTTTATACCTTC1- C241T C1059T C3037T C5312T G8131T C10833T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548700
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00019/2020
 ATTAAAGGTTTATAC1- C241T C1059T C3037T C5312T C10833T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548701
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5312T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548702
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00021/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C22747T A23403G C25321T G25563T T28340C G28368A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548703
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00022/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G C25321T G25563T G28368A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548704
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00023/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C6578T C14408T A23403G G25563T TTCTTA27695- G28368A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548709
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00028/2020
 ATTA1- C241T C583T C1059T C3037T C7945T C14408T A23403G G25563T C28153T G28368A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548711
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00030/2020
 ATTA1- C241T C1059T C3037T C7945T C14408T A23403G G25563T G27670T G28368A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548712
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00031/2020
 ATTAAAGGTTTATACCT1- C241T C1059T C3037T C6578T C14408T A23403G G25563T G28368A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548714
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00033/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C5312T G8131K C10833T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548716
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00037/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C2919T C3037T G7360T C11919T C14408T T22054Y A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548717
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C2919T C3037T C11919T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548718
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00039/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C203Y C241T C1059T C3037T C3738T C14408T A23403G G25563T G28368A G28857T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548720
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00042/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C2416T C3037T C14408T A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548721
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C3037T C14408T A23403G C29722T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548722
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00044/2020
 ATTAAAGGTTTA1- C241T C1059T C3037T C5312T C9474T G9652K G11083K C14408T C15251Y G17347T A23403G G25563T G29431T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548723
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00045/2020
 ATTAAAGGTTTATACC1- C241T C1059T C3037T C5312T C9474T G9652K G11083K C14408T C15251Y G17347T A23403G G25563T G29431T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548724
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00046/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G C25321T G25563T G28368A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548726
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00049/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C5312T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548727
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00050/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C5312T C14408T A23403G G25563T CTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29857-

EPI_ISL_548728
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5312T C14408T T21995W A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548729
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00052/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5312T A6276G C14408T G16072A A23403G G25563T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548730
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00053/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5312T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548731
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5312T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548732
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00055/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C5312T C10833T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548733
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00056/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C5312T C10833T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548734
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00057/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C4795Y C5312T G8131K C10833T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548735
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00059/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T G11335T C14408T A23403G G25563T G29202A C29769T AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548737
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G C25321T G25563T G28368A GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548738
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00062/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C16523T C21575T A23403G G25563T G28368A GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548740
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00064/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C1059T C3037T C5312T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548741
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00065/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T C22747T A23403G C25321T G25563T T28340C G28368A GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548742
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00066/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C4582T C14408T A23403G C25321T G25563T G28368A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548743
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00068/2020
 ATTAAAGGTTTATACC1- C241T C2416T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548744
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00069/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C1059T C3037T C14408T G22484T C22747T A23403G C25321T G25563T T28340C G28368A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_548745
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00070/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T C22747T A23403G C25321T G25563T T28340C G28368A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548746
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00071/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C2416T C2919T C3037T C7564Y C14408T A23403G G25563T GAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29795-

EPI_ISL_548747
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00072/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C5312T C9474T G11083T C14408T G17347T A23403G G25563T G29431T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548750
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00075/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T G22661T C22838A A23403G G25563T G28368A G29543T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548751
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00076/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T G11335T C14408T A23403G G25563T A27854G C29769T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548752
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00077/2020
 ATTAAAGGTTTATA1- C241T C1059T C3037T C14408T A23403G C24921T G25217T G25563T GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_548753
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00078/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C3037T A13631G C14408T G19072T A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548754
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00079/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C1059T C3037T C4698T C5312T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548755
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00080/2020
 ATTAAAGGTTTATACCTTCCCAGGTA1- C241T C1059T C3037T C14408T C22747T A23403G C25321T G25563T T28340C G28368A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548759
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C1059T C3037T C14408T A23403G C25321T G25563T G28368A CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548760
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00087/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C2416T C3037T C14408T A23403G G25563T CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_548761
 2020-09-27 2020-09-27
 Canada hCoV-19/Canada/ON-PHL-20-00088/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C1059T C3037T C14408T A23403G C25321T G25563T G28368A AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_549336
 2020-09-28 2020-09-28
 United Kingdom hCoV-19/England/NORW-EFB15/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- G6617A C14931T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549349
 2020-09-28 2020-09-28
 United Kingdom hCoV-19/England/NORW-EFA45/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- ATG1605- C9693T C14931T C18555T G26152T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549395
 2020-09-28 2020-09-28
 United Kingdom hCoV-19/England/CAMB-1B5EE1/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1288T C3037T C8123T C11050T C11514T C13426T C14408T C14937T G21893A C22783T A23403G C24904T T27597C GGG28881AAC A29056G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549477
 2020-09-28 2020-09-28
 United Kingdom hCoV-19/England/NORW-EE651/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC C29420T C29642T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549478
 2020-09-28 2020-09-28
 United Kingdom hCoV-19/England/NORW-EE6D9/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22992A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549482
 2020-09-28 2020-09-28
 United Kingdom hCoV-19/England/NORW-EFA27/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549483
 2020-09-28 2020-09-28
 United Kingdom hCoV-19/England/NORW-EFACD/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G G28077T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549484
 2020-09-28 2020-09-28
 United Kingdom hCoV-19/England/NORW-EFADC/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C12915T C14408T A20268G A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549485
 2020-09-28 2020-09-28
 United Kingdom hCoV-19/England/NORW-EFB06/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- G11083T C14805T T17247C G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549486
 2020-09-28 2020-09-28
 United Kingdom hCoV-19/England/NORW-EFB60/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C8367T C14408T C19524T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549487
 2020-09-28 2020-09-28
 United Kingdom hCoV-19/England/NORW-EFC7C/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T G22992A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549489
 2020-09-28 2020-09-28
 United Kingdom hCoV-19/England/NORW-EFCD6/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G C25728T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_549490
 2020-09-28 2020-09-28
 United Kingdom hCoV-19/England/NORW-EFCE5/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C865T T6644C G11083T C14805T C23707T G26144T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561205
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-038/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A4199G A5533G G10870T C12469T C14408T A23403G C27765T GGG28881AAC C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561206
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-061/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T T8613C C10377T C14408T A15861G A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561232
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-1514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T G5515T C13694T C14408T A23403G C28310T GGG28881AAC C29025T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561239
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-1921/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C12469T C14408T A23403G C27765T GGG28881AAC C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561243
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2344/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T G5150T C9891T C14408T C21736T A23403G G25563T G29017T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561244
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2374/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C14408T C15960T A20268G A23403G C28833T C28873T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561245
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-242/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C14408T A23403G CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561248
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2443/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C14408T C15960T A20268G A23403G C28833T C28873T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561257
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-247/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2810G C3037T C3373A C9561T C14408T C16575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561270
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-253/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2810G C3037T C3373A C9561T C14408T C16575T A23403G T24640C GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561273
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-255/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C12469T C14408T A23403G C27765T GGG28881AAC C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561277
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-256/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A C9561T C14408T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561279
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2567/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A424T G1495T C3037T T3547C C14120T C14408T C15324T G17964T A19476G A23403G G25217T T25467C G25621T G28083T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561282
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2588/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C12469T C14408T C14599T A23403G C27765T GGG28881AAC C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561284
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2626/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1065G C3037T C3373A C9561T C14408T C16575T A23403G G24586T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561287
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2706/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1059T C3037T C7195T C9891T C14408T C21736T A23403G G25563T C29537T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561296
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T A2745G C3037T C14408T A20268G G22706T A23403G A25974G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561298
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2790/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1065G C3037T C3373A C4543T C9561T C14408T C16575T A23403G G24586T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561299
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C11008T C11962T C14408T A20268G A23403G C25886T C28833T C29095T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561300
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-287/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1392T C3037T C3373A C9561T C14408T G19006T C21034T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561303
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-290/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2810G C3037T C3373A C9561T C14408T C16575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561305
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-295/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2810G C3037T C3373A C9561T C14408T C16575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561306
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-297/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A2810G C3037T C3373A C9561T C14408T C16575T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561307
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-2984/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1065G C3037T C3373A G4904T C9561T C14408T C16575T A23403G G24586T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561308
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-299/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T T809C C1392T C3037T C3373A C9561T C14408T G19006T A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561313
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-3206/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1065G C3037T C3373A T3380C C9561T C14408T A16070G C16575T A23403G G24586T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561324
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-748/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C3037T C3373A A5533G G10870T C14408T A23403G C27765T GGG28881AAC C28932T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561330
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-923/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T G1186A C1625T C3037T C14408T A20268G G22706T A23403G C28833T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561332
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-941/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C3653T C8208T C14408T A20268G A23403G C28833T G29553T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_561333
 2020-09-30 2020-09-30
 Gambia hCoV-19/Gambia/NPHL-953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C1625T C3037T C14408T C15960T A20268G A23403G C28833T C28873T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_562630
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC9282/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T C16222T G16647T A17337G C18555T C22858T G22992A G23401A A23403G C24034T -25700CCC GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563010
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC10643/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C16260Y G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563012
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC10645/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T C920T A1163T C3037T C5221Y T7540C C8717T C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563017
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC10654/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC C29362T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563023
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC10662/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T G18002A C18555T G22992A G23401A A23403G GGG28881AAC C29362T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563041
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC10702/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C8717T C11779Y C14408T C15371T G16647T C16952Y A17337G C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563073
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC10756/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C28994S CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563112
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC10825/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G24712A A26162G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_563115
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC10830/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T C920T A1163T C3037T T7540C C8717T C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_563116
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC10831/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_563169
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC10959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T A5790G T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563173
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC10967/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563186
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC10991/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563189
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC10996/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC G29755T CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563196
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC11011/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G C27644T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563201
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC11018/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563203
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC11020/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563207
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC11024/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C G13762A C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563217
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC11043/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T G3259R T7540C C7765Y C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563219
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC11045/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563223
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC11051/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3860T T7540C C14408T C15352T G16647T C18555T C21812T G22992A G23401A A23403G G24992C A26162G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563225
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC11054/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C C14408T C14676T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_563242
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC11086/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G C27494T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563244
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC11089/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C C12924T C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_563366
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC11420/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22315C G22992A G23401A A23403G C28087Y GGG28881AAC G29543C TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_563988
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC3410/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_563994
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC6494/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C26028T GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564014
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC6725/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T T22328C G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564145
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC6925/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C24382T GGG28881AAC C29218T ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564455
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7506/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T T7540C A12790W C14408T C15714T G16647T C18555T G22992A G23401A A23403G C28849T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564456
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7508/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C T8431Y C14408T G16647T C18555T G22992A G23401A A23403G C23635Y GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564457
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7509/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTC1- C241T A1163T C3037T T7540C C14408T G16647T C18086T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564458
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7511/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C T8431C C14408T G16647T C18555T G22992A G23401A A23403G C23635T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564459
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7512/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T G17252A C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564460
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7513/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952Y C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564461
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7514/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564462
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7515/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_564464
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7518/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564465
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7519/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564466
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7520/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18493Y C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564467
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7521/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C12733Y C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_564468
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7522/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564469
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7523/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564470
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7525/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T C16349Y G16647T C18555T C18568T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564491
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7548/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T T2887Y C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564493
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7551/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C18568T G22992A G23401A A23403G C24213T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_564496
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7556/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_564498
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7560/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_564499
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7561/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21516T G22992A G23401A A23403G GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_564500
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7562/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16887Y C18555T G22992A G23401A A23403G GGG28881AAC C29838M TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564501
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7563/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564502
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7565/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_564521
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC7597/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T C920T A1163T C3037T T7540C G13762A C14408T C15371T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC TTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29847-

EPI_ISL_564905
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8215/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565004
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8427/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAAC1- C241T A1163T C3037T G3114T GT5743SY T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565005
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8429/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G15594T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565006
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8431/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T A1393R C3037T T7540C C14408T G16647T A17337G C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565007
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8433/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C20611T C22480T G22992A G23401A A23403G C26022Y C27059T GGG28881AAC TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29851-

EPI_ISL_565034
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8464/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29849-

EPI_ISL_565040
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8474/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC TTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29846-

EPI_ISL_565041
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8475/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC C29836Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565243
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8860/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC GCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29853-

EPI_ISL_565264
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8889/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T C920T A1163T C3037T T7540C C14408T G16647T A17337G C18555T A21137R G22992A G23401A A23403G GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565277
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8908/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T C21516T G22992A G23401A A23403G T23449C GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565278
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8910/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C18555T G22992A G23401A A23403G C28313T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565279
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8911/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T C7162T T7540C C14408T G16647T C16952T C18555T G22992A G23401A A23403G GGG28881AAC TTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29845-

EPI_ISL_565307
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8953/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC CCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29837-

EPI_ISL_565308
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8954/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T G27505K C28087T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565310
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8957/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565311
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8959/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66Y C241T A1163T C1722Y C3037T G3114T C5822Y T7540C C14408T G16647T C17850Y C18555T C22480Y G22992A G23401A A23403G C27059Y C28087T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565312
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8960/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565313
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8961/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTT1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC ATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29844-

EPI_ISL_565314
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC8962/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCG1- C241T A1163T C3037T G3114T T7540C C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T C28087T GGG28881AAC TGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29842-

EPI_ISL_565479
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC9277/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCA1- C66T C241T A1163T C3037T C5884T T7540C C11109T C14408T G16647T T17835G C17850T C18555T G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565480
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC9278/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C T8758Y C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC C29750Y AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565481
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC9279/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T T772Y A1163T C3037T T7540C C14408T G16647T C17850T C18555T G22992A G23401A A23403G C24351T T25111A GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565482
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC9283/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T T7540C C11109T C14408T G16647T C17850T C18555T G22992A G23401A A23403G T27531Y C28732Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565483
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC9284/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTG1- C241T A1163T C3037T G3114T C4296T C6255T T7540C C8480T G10753A C14408T G16647T C18555T C22480T G22992A G23401A A23403G C24797T C27059T C28093Y GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565486
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC9288/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T C920T A1163T C3037T T7540C A10323G C14408T G16647T A17337G C18555T G22992A G23401A A23403G C27688T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565488
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC9292/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T C920T A1163T C3037T T7540C C12763T C14408T G16647T A17337G C18555T T20439C G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565489
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC9293/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAA1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22520A G22992A G23401A A23403G GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565490
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC9294/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCTCTTGT1- C241T A1163T C3037T G3114T T7540C C8293Y C14408T G16647T C18555T C22480T G22992A G23401A A23403G C27059T GGG28881AAC AGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29852-

EPI_ISL_565566
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC9476/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C66T C241T A1163T C3037T C3866M T7540C C11109T T11170Y C14408T G16647T C17850T C18555T G22992A G23401A A23403G GGG28881AAC CATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29838-

EPI_ISL_565623
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC9609/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGAT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G G25996T GGG28881AAC GTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29841-

EPI_ISL_565744
 2020-09-30 2020-09-30
 Australia hCoV-19/Australia/VIC9858/2020
 ATTAAAGGTTTATACCTTCCCAGGTAACAAACCAACCAACTTTCGATCT1- C241T A1163T C3037T T7540C C14408T G16647T C18555T G22992A G23401A A23403G GGG28881AAC CTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29854-

EPI_ISL_418250
 2020-xx-xx 2020
 Spain hCoV-19/Spain/Cataluna201396/2020
 C241T C313T C3037T C8782T C14408T A23403G G26951T GGG28881AAC AGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29782-